Query 044012
Match_columns 490
No_of_seqs 124 out of 1271
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 18:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 3.6E-64 1.2E-68 503.9 41.0 431 6-485 12-453 (454)
2 2vch_A Hydroquinone glucosyltr 100.0 5.4E-60 1.8E-64 481.7 43.4 446 5-486 4-469 (480)
3 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 1.1E-60 3.7E-65 488.5 35.8 454 1-488 1-481 (482)
4 2c1x_A UDP-glucose flavonoid 3 100.0 9.3E-59 3.2E-63 469.6 38.7 441 1-488 1-454 (456)
5 2acv_A Triterpene UDP-glucosyl 100.0 2.8E-58 9.7E-63 467.3 37.6 442 1-486 1-463 (463)
6 2iya_A OLEI, oleandomycin glyc 100.0 2.7E-45 9.3E-50 370.1 35.9 399 5-486 10-421 (424)
7 4amg_A Snogd; transferase, pol 100.0 3.7E-45 1.3E-49 366.2 27.9 368 5-484 20-398 (400)
8 3rsc_A CALG2; TDP, enediyne, s 100.0 3.4E-41 1.2E-45 339.2 32.6 364 5-464 18-396 (415)
9 3ia7_A CALG4; glycosysltransfe 100.0 2.8E-40 9.7E-45 330.9 34.4 382 5-485 2-397 (402)
10 1iir_A Glycosyltransferase GTF 100.0 1.3E-41 4.5E-46 342.0 23.2 379 8-487 1-401 (415)
11 3h4t_A Glycosyltransferase GTF 100.0 1.5E-40 5.2E-45 332.8 27.2 367 8-485 1-381 (404)
12 1rrv_A Glycosyltransferase GTF 100.0 5.8E-41 2E-45 337.5 22.7 376 8-486 1-401 (416)
13 2iyf_A OLED, oleandomycin glyc 100.0 7.7E-39 2.6E-43 323.5 32.6 372 1-464 1-382 (430)
14 2yjn_A ERYCIII, glycosyltransf 100.0 3.2E-39 1.1E-43 327.2 27.2 382 5-486 18-435 (441)
15 2p6p_A Glycosyl transferase; X 100.0 3.4E-38 1.2E-42 314.0 29.3 364 8-489 1-382 (384)
16 4fzr_A SSFS6; structural genom 100.0 9.4E-37 3.2E-41 305.0 21.1 350 5-464 13-383 (398)
17 3oti_A CALG3; calicheamicin, T 100.0 1.9E-35 6.6E-40 295.5 29.3 364 5-485 18-396 (398)
18 3tsa_A SPNG, NDP-rhamnosyltran 100.0 8.4E-35 2.9E-39 290.2 27.8 363 7-485 1-387 (391)
19 3otg_A CALG1; calicheamicin, T 100.0 1.3E-32 4.5E-37 276.2 30.4 368 5-485 18-407 (412)
20 3s2u_A UDP-N-acetylglucosamine 100.0 1.5E-29 5.1E-34 249.0 29.0 323 8-459 3-338 (365)
21 2o6l_A UDP-glucuronosyltransfe 99.9 1.6E-27 5.3E-32 208.7 14.3 163 266-464 6-169 (170)
22 1f0k_A MURG, UDP-N-acetylgluco 99.9 1.6E-20 5.6E-25 184.7 26.1 305 8-441 7-322 (364)
23 3hbm_A UDP-sugar hydrolase; PS 99.7 1E-15 3.4E-20 143.1 16.8 119 280-416 156-275 (282)
24 2jzc_A UDP-N-acetylglucosamine 99.6 5.2E-15 1.8E-19 132.6 9.8 140 279-441 26-196 (224)
25 3okp_A GDP-mannose-dependent a 99.5 1.7E-11 5.9E-16 121.2 30.8 331 5-460 2-359 (394)
26 3c48_A Predicted glycosyltrans 99.5 4.9E-11 1.7E-15 119.9 32.0 356 5-462 18-408 (438)
27 1v4v_A UDP-N-acetylglucosamine 99.4 2.1E-11 7.3E-16 120.0 23.7 129 280-443 197-333 (376)
28 2gek_A Phosphatidylinositol ma 99.4 3E-11 1E-15 120.0 24.5 310 5-443 18-348 (406)
29 3dzc_A UDP-N-acetylglucosamine 99.4 5.7E-12 2E-16 124.8 15.3 327 5-443 23-366 (396)
30 2r60_A Glycosyl transferase, g 99.4 3E-10 1E-14 116.2 28.5 381 1-461 1-440 (499)
31 3ot5_A UDP-N-acetylglucosamine 99.3 3.9E-11 1.3E-15 119.0 19.5 320 5-443 25-360 (403)
32 3fro_A GLGA glycogen synthase; 99.3 1.6E-09 5.4E-14 108.5 30.8 376 6-460 1-411 (439)
33 1vgv_A UDP-N-acetylglucosamine 99.3 2.2E-11 7.4E-16 120.2 15.9 130 280-443 204-341 (384)
34 2iw1_A Lipopolysaccharide core 99.3 1.7E-10 6E-15 113.1 20.7 148 282-461 196-353 (374)
35 2jjm_A Glycosyl transferase, g 99.3 2.3E-09 8E-14 106.0 28.9 332 7-460 15-365 (394)
36 2iuy_A Avigt4, glycosyltransfe 99.2 9.2E-10 3.2E-14 106.7 21.6 125 284-443 164-307 (342)
37 2x6q_A Trehalose-synthase TRET 99.2 1E-08 3.5E-13 102.1 27.3 92 345-459 292-393 (416)
38 3beo_A UDP-N-acetylglucosamine 99.2 4.1E-09 1.4E-13 103.3 24.1 130 280-443 204-341 (375)
39 4hwg_A UDP-N-acetylglucosamine 99.2 7.3E-10 2.5E-14 108.9 17.4 319 6-444 8-342 (385)
40 1rzu_A Glycogen synthase 1; gl 98.9 3.2E-07 1.1E-11 93.2 25.3 127 284-442 293-438 (485)
41 2qzs_A Glycogen synthase; glyc 98.9 7.4E-07 2.5E-11 90.5 25.9 128 283-442 293-439 (485)
42 3s28_A Sucrose synthase 1; gly 98.8 2.2E-06 7.6E-11 91.3 27.3 148 283-459 573-748 (816)
43 3oy2_A Glycosyltransferase B73 98.6 3.1E-06 1.1E-10 83.8 22.0 74 348-443 256-354 (413)
44 2vsy_A XCC0866; transferase, g 98.6 0.00024 8.1E-09 73.5 35.1 81 346-443 434-521 (568)
45 2xci_A KDO-transferase, 3-deox 98.5 3.5E-05 1.2E-09 75.3 24.8 98 347-464 261-364 (374)
46 2f9f_A First mannosyl transfer 98.4 2.5E-06 8.4E-11 73.9 11.3 130 284-445 25-163 (177)
47 2hy7_A Glucuronosyltransferase 98.3 5.7E-05 2E-09 74.6 21.7 75 345-445 264-353 (406)
48 2x0d_A WSAF; GT4 family, trans 98.2 0.00018 6.3E-09 71.1 20.9 80 345-445 294-380 (413)
49 3qhp_A Type 1 capsular polysac 98.1 4.6E-05 1.6E-09 64.8 12.6 146 282-463 2-158 (166)
50 3vue_A GBSS-I, granule-bound s 98.0 0.00074 2.5E-08 69.1 21.5 138 284-443 329-476 (536)
51 3tov_A Glycosyl transferase fa 97.7 0.0017 5.8E-08 62.5 18.0 107 4-142 5-115 (349)
52 1psw_A ADP-heptose LPS heptosy 97.6 0.0061 2.1E-07 58.4 20.4 103 8-142 1-106 (348)
53 4gyw_A UDP-N-acetylglucosamine 97.5 0.0035 1.2E-07 66.4 18.2 140 279-443 520-667 (723)
54 2bfw_A GLGA glycogen synthase; 97.4 0.0035 1.2E-07 54.6 14.9 92 347-460 96-196 (200)
55 3rhz_A GTF3, nucleotide sugar 97.3 0.00082 2.8E-08 64.3 9.7 111 347-484 215-337 (339)
56 3q3e_A HMW1C-like glycosyltran 97.2 0.0048 1.6E-07 63.0 14.8 136 281-445 440-588 (631)
57 2gt1_A Lipopolysaccharide hept 97.0 0.041 1.4E-06 52.1 18.1 46 8-53 1-48 (326)
58 2phj_A 5'-nucleotidase SURE; S 94.8 0.13 4.4E-06 46.1 9.1 115 7-146 1-128 (251)
59 2wqk_A 5'-nucleotidase SURE; S 94.7 0.19 6.5E-06 45.3 10.0 114 7-145 1-127 (251)
60 2ywr_A Phosphoribosylglycinami 93.5 0.86 3E-05 40.0 11.9 104 7-146 1-111 (216)
61 3auf_A Glycinamide ribonucleot 93.0 0.93 3.2E-05 40.2 11.2 106 5-146 20-132 (229)
62 3av3_A Phosphoribosylglycinami 92.0 1.3 4.5E-05 38.7 10.8 104 7-146 3-113 (212)
63 3rfo_A Methionyl-tRNA formyltr 91.8 1.1 3.9E-05 41.8 10.7 36 5-45 2-37 (317)
64 2bw0_A 10-FTHFDH, 10-formyltet 90.9 1.4 4.7E-05 41.5 10.3 103 5-147 20-131 (329)
65 3q0i_A Methionyl-tRNA formyltr 90.6 2.3 7.8E-05 39.7 11.5 35 5-44 5-39 (318)
66 1jkx_A GART;, phosphoribosylgl 89.2 4.5 0.00015 35.2 11.6 103 8-146 1-110 (212)
67 3gt7_A Sensor protein; structu 88.1 5.3 0.00018 32.2 11.0 38 1-42 1-38 (154)
68 3tqr_A Phosphoribosylglycinami 87.8 3.6 0.00012 35.9 9.9 106 5-146 3-114 (215)
69 1j9j_A Stationary phase surviV 87.3 2 6.7E-05 38.4 8.1 115 8-145 1-128 (247)
70 1l5x_A SurviVal protein E; str 87.1 4.3 0.00015 37.0 10.3 114 8-146 1-128 (280)
71 3zqu_A Probable aromatic acid 86.5 0.84 2.9E-05 39.7 5.1 47 6-53 3-49 (209)
72 3eod_A Protein HNR; response r 86.2 9.8 0.00034 29.3 11.6 38 1-42 1-38 (130)
73 1fmt_A Methionyl-tRNA FMet for 86.2 3.9 0.00013 38.1 9.9 41 106-146 71-112 (314)
74 1g5t_A COB(I)alamin adenosyltr 86.1 11 0.00037 32.3 11.8 97 7-126 28-130 (196)
75 2rjn_A Response regulator rece 86.0 8.9 0.00031 30.7 11.2 38 1-42 1-38 (154)
76 2e6c_A 5'-nucleotidase SURE; S 85.3 5 0.00017 35.7 9.6 116 8-145 1-129 (244)
77 3tqq_A Methionyl-tRNA formyltr 84.7 6 0.00021 36.8 10.4 34 7-45 2-35 (314)
78 1meo_A Phosophoribosylglycinam 84.0 9.3 0.00032 33.1 10.7 103 8-146 1-110 (209)
79 3lqk_A Dipicolinate synthase s 83.8 1.2 4.2E-05 38.4 4.9 46 4-49 4-49 (201)
80 3iqw_A Tail-anchored protein t 83.6 6.3 0.00021 37.1 10.2 43 6-48 14-57 (334)
81 3qxc_A Dethiobiotin synthetase 83.1 7.6 0.00026 34.5 10.0 38 5-42 18-57 (242)
82 3kcq_A Phosphoribosylglycinami 82.9 5.7 0.00019 34.6 8.8 101 5-146 6-113 (215)
83 3da8_A Probable 5'-phosphoribo 82.9 4.2 0.00014 35.5 7.9 106 5-146 10-120 (215)
84 4ds3_A Phosphoribosylglycinami 82.6 6.3 0.00021 34.2 8.9 106 5-146 5-117 (209)
85 3cg4_A Response regulator rece 82.5 13 0.00044 29.1 10.5 38 1-42 1-38 (142)
86 1kjn_A MTH0777; hypotethical p 82.5 1.6 5.5E-05 35.1 4.6 53 1-53 1-54 (157)
87 1mvl_A PPC decarboxylase athal 82.4 1.7 5.8E-05 37.8 5.2 47 5-53 17-63 (209)
88 3fgn_A Dethiobiotin synthetase 81.6 19 0.00066 32.1 12.1 37 6-42 24-62 (251)
89 2iz6_A Molybdenum cofactor car 80.9 17 0.00059 30.4 10.8 45 348-393 91-140 (176)
90 2ejb_A Probable aromatic acid 80.8 2.3 7.8E-05 36.3 5.4 44 8-52 2-45 (189)
91 3ty2_A 5'-nucleotidase SURE; s 80.7 1.7 5.8E-05 39.0 4.6 51 1-53 4-55 (261)
92 3p9x_A Phosphoribosylglycinami 80.3 21 0.00072 30.9 11.4 104 7-146 2-112 (211)
93 1p3y_1 MRSD protein; flavoprot 79.9 1.2 4E-05 38.4 3.3 48 5-53 6-53 (194)
94 3io3_A DEHA2D07832P; chaperone 79.4 7.5 0.00026 36.7 9.1 41 6-46 16-59 (348)
95 1uqt_A Alpha, alpha-trehalose- 79.0 11 0.00037 37.5 10.5 109 348-487 333-454 (482)
96 1sbz_A Probable aromatic acid 78.9 2 6.8E-05 37.0 4.4 45 8-53 1-46 (197)
97 4dim_A Phosphoribosylglycinami 78.7 5.8 0.0002 38.3 8.3 89 5-139 5-97 (403)
98 3qjg_A Epidermin biosynthesis 78.6 2.4 8.1E-05 35.7 4.7 44 8-52 6-49 (175)
99 3o1l_A Formyltetrahydrofolate 78.5 19 0.00066 33.1 11.2 105 5-146 103-212 (302)
100 1ccw_A Protein (glutamate muta 78.4 3.4 0.00012 33.1 5.5 42 6-47 2-43 (137)
101 3mcu_A Dipicolinate synthase, 78.2 2.4 8.1E-05 36.8 4.7 44 5-49 3-47 (207)
102 2bln_A Protein YFBG; transfera 77.9 7.3 0.00025 36.0 8.3 40 107-146 66-106 (305)
103 3t5t_A Putative glycosyltransf 76.9 20 0.0007 35.5 11.6 110 347-487 353-473 (496)
104 3nb0_A Glycogen [starch] synth 76.9 6.2 0.00021 40.8 8.0 35 357-393 513-551 (725)
105 3hdg_A Uncharacterized protein 76.7 12 0.00039 29.2 8.4 39 1-43 1-39 (137)
106 1ys7_A Transcriptional regulat 76.7 24 0.00081 30.4 11.2 37 1-41 1-37 (233)
107 3vot_A L-amino acid ligase, BL 76.6 6 0.00021 38.5 7.8 35 106-140 65-101 (425)
108 3ug7_A Arsenical pump-driving 76.3 12 0.0004 35.4 9.5 47 6-53 24-71 (349)
109 3pdi_B Nitrogenase MOFE cofact 75.6 9 0.00031 37.7 8.7 34 107-143 366-399 (458)
110 3i42_A Response regulator rece 75.0 24 0.00082 26.7 9.7 33 6-42 2-34 (127)
111 3hv2_A Response regulator/HD d 74.7 30 0.001 27.4 10.8 34 5-42 12-45 (153)
112 2qvg_A Two component response 74.4 23 0.0008 27.5 9.7 39 1-43 1-41 (143)
113 3cg0_A Response regulator rece 73.3 28 0.00097 26.8 9.9 32 5-40 7-38 (140)
114 3dfu_A Uncharacterized protein 72.9 20 0.0007 31.5 9.4 34 5-43 4-37 (232)
115 2qr3_A Two-component system re 72.6 30 0.001 26.6 9.9 33 6-42 2-34 (140)
116 1qzu_A Hypothetical protein MD 72.6 3.2 0.00011 36.0 4.1 48 5-53 17-65 (206)
117 4dzz_A Plasmid partitioning pr 72.3 24 0.00082 29.8 9.9 39 9-47 3-42 (206)
118 3igf_A ALL4481 protein; two-do 72.1 5.8 0.0002 38.0 6.1 37 7-43 1-38 (374)
119 1g63_A Epidermin modifying enz 69.2 3.8 0.00013 34.7 3.7 44 8-52 3-46 (181)
120 3n0v_A Formyltetrahydrofolate 68.2 48 0.0017 30.1 11.2 105 5-146 88-197 (286)
121 3sxp_A ADP-L-glycero-D-mannohe 67.3 76 0.0026 29.5 13.1 37 3-43 6-44 (362)
122 3ih5_A Electron transfer flavo 67.2 15 0.0005 32.1 7.2 110 7-143 3-121 (217)
123 3u7q_B Nitrogenase molybdenum- 67.0 38 0.0013 33.9 11.1 35 106-143 428-469 (523)
124 3lou_A Formyltetrahydrofolate 66.2 67 0.0023 29.3 11.7 105 5-146 93-202 (292)
125 3mc3_A DSRE/DSRF-like family p 66.1 11 0.00037 30.0 5.7 46 7-52 15-63 (134)
126 3jte_A Response regulator rece 65.8 44 0.0015 25.8 11.1 34 6-43 2-35 (143)
127 2yxb_A Coenzyme B12-dependent 65.7 7.4 0.00025 32.1 4.8 41 6-46 17-57 (161)
128 3obi_A Formyltetrahydrofolate 65.1 34 0.0012 31.2 9.5 105 5-146 87-197 (288)
129 1y80_A Predicted cobalamin bin 63.6 12 0.00041 32.3 6.0 47 6-52 87-133 (210)
130 3nrb_A Formyltetrahydrofolate 63.5 57 0.0019 29.7 10.7 105 5-146 86-196 (287)
131 3pdi_A Nitrogenase MOFE cofact 63.1 39 0.0013 33.4 10.2 35 106-143 391-425 (483)
132 1id1_A Putative potassium chan 62.8 4.7 0.00016 32.8 3.0 34 6-44 2-35 (153)
133 3tov_A Glycosyl transferase fa 62.8 52 0.0018 30.8 10.8 102 7-147 185-290 (349)
134 1qgu_B Protein (nitrogenase mo 62.3 41 0.0014 33.6 10.3 100 6-143 359-465 (519)
135 3dm5_A SRP54, signal recogniti 62.2 13 0.00044 36.3 6.4 43 7-49 100-142 (443)
136 3g0o_A 3-hydroxyisobutyrate de 61.0 4.3 0.00015 37.5 2.7 38 1-43 1-38 (303)
137 2rdm_A Response regulator rece 60.8 52 0.0018 24.9 11.8 34 5-42 3-36 (132)
138 1mio_B Nitrogenase molybdenum 60.1 57 0.002 31.9 10.9 35 106-143 375-409 (458)
139 2r8r_A Sensor protein; KDPD, P 59.9 13 0.00046 32.5 5.5 40 6-45 5-44 (228)
140 4b4o_A Epimerase family protei 59.8 7.3 0.00025 35.6 4.1 32 8-43 1-32 (298)
141 2q5c_A NTRC family transcripti 59.7 35 0.0012 29.0 8.1 39 106-147 132-170 (196)
142 2vo1_A CTP synthase 1; pyrimid 59.4 10 0.00035 33.9 4.6 45 5-49 20-67 (295)
143 1jx7_A Hypothetical protein YC 58.9 14 0.00046 28.2 5.0 43 8-50 2-49 (117)
144 2i2x_B MTAC, methyltransferase 58.5 15 0.00052 32.9 5.9 41 6-46 122-162 (258)
145 3u7q_A Nitrogenase molybdenum- 58.1 39 0.0013 33.5 9.2 35 106-143 407-441 (492)
146 4egb_A DTDP-glucose 4,6-dehydr 57.6 42 0.0014 31.0 9.2 34 5-42 22-55 (346)
147 1z7e_A Protein aRNA; rossmann 57.6 18 0.00061 37.5 7.0 41 107-147 66-107 (660)
148 3gpi_A NAD-dependent epimerase 56.9 12 0.00042 33.8 5.1 34 6-44 2-35 (286)
149 3lyu_A Putative hydrogenase; t 56.9 71 0.0024 25.3 10.6 36 7-45 18-53 (142)
150 1psw_A ADP-heptose LPS heptosy 56.8 87 0.003 28.8 11.3 103 7-146 180-289 (348)
151 3gl9_A Response regulator; bet 56.5 21 0.00073 27.0 5.8 42 107-148 37-87 (122)
152 3n7t_A Macrophage binding prot 56.3 22 0.00076 31.6 6.5 39 6-44 8-57 (247)
153 3eag_A UDP-N-acetylmuramate:L- 56.3 9.9 0.00034 35.5 4.4 34 6-43 3-36 (326)
154 3ghy_A Ketopantoate reductase 56.2 8.3 0.00028 36.1 3.9 34 6-44 2-35 (335)
155 3cnb_A DNA-binding response re 55.8 67 0.0023 24.6 9.9 38 1-42 1-41 (143)
156 3h5i_A Response regulator/sens 54.7 71 0.0024 24.5 11.2 33 6-42 4-36 (140)
157 3hn2_A 2-dehydropantoate 2-red 54.4 19 0.00065 33.2 6.0 40 8-53 3-42 (312)
158 2gk4_A Conserved hypothetical 53.9 21 0.00072 31.4 5.8 23 23-45 31-53 (232)
159 4gi5_A Quinone reductase; prot 53.4 20 0.00067 32.6 5.7 38 5-42 20-60 (280)
160 3ezx_A MMCP 1, monomethylamine 53.4 22 0.00074 30.9 5.8 46 5-50 90-135 (215)
161 1xp8_A RECA protein, recombina 53.3 92 0.0032 29.4 10.7 40 9-48 76-115 (366)
162 3llv_A Exopolyphosphatase-rela 53.2 7.6 0.00026 30.9 2.6 34 6-44 5-38 (141)
163 2xj4_A MIPZ; replication, cell 53.1 14 0.00049 33.5 4.9 40 6-45 2-43 (286)
164 2g1u_A Hypothetical protein TM 52.9 14 0.00048 29.9 4.3 35 5-44 17-51 (155)
165 3bgw_A DNAB-like replicative h 52.8 17 0.00059 35.5 5.6 45 7-51 197-241 (444)
166 2lpm_A Two-component response 52.5 12 0.00042 29.1 3.7 38 107-144 44-86 (123)
167 1e2b_A Enzyme IIB-cellobiose; 52.2 29 0.001 26.1 5.7 38 6-43 2-39 (106)
168 2qs7_A Uncharacterized protein 52.2 17 0.00056 29.3 4.5 44 9-52 9-53 (144)
169 2i2c_A Probable inorganic poly 51.9 14 0.00048 33.4 4.5 52 362-443 35-92 (272)
170 3l6d_A Putative oxidoreductase 51.7 8 0.00027 35.8 2.9 34 4-42 6-39 (306)
171 3kjh_A CO dehydrogenase/acetyl 51.5 8.8 0.0003 33.8 3.1 38 8-45 1-38 (254)
172 1lss_A TRK system potassium up 51.4 8.3 0.00028 30.3 2.6 33 6-43 3-35 (140)
173 4huj_A Uncharacterized protein 51.3 7.5 0.00026 33.9 2.5 35 5-44 21-55 (220)
174 1mio_A Nitrogenase molybdenum 51.2 43 0.0015 33.6 8.3 36 105-143 445-480 (533)
175 1bg6_A N-(1-D-carboxylethyl)-L 51.1 9.3 0.00032 36.0 3.3 34 5-43 2-35 (359)
176 2ew2_A 2-dehydropantoate 2-red 51.0 9.3 0.00032 35.1 3.2 33 6-43 2-34 (316)
177 1kjq_A GART 2, phosphoribosylg 50.9 93 0.0032 29.3 10.6 36 5-45 9-44 (391)
178 2a5l_A Trp repressor binding p 50.8 20 0.00068 30.3 5.1 39 5-43 3-42 (200)
179 3to5_A CHEY homolog; alpha(5)b 50.4 23 0.00078 28.0 5.1 40 110-149 51-99 (134)
180 3ouz_A Biotin carboxylase; str 50.3 41 0.0014 32.7 8.0 35 5-44 4-38 (446)
181 3kkl_A Probable chaperone prot 49.9 25 0.00087 31.1 5.8 38 7-44 3-51 (244)
182 3i83_A 2-dehydropantoate 2-red 49.2 20 0.00067 33.3 5.2 40 8-53 3-42 (320)
183 2q6t_A DNAB replication FORK h 48.2 48 0.0016 32.3 8.0 44 8-51 201-245 (444)
184 1p9o_A Phosphopantothenoylcyst 48.0 13 0.00045 34.4 3.7 39 7-45 36-89 (313)
185 4e5s_A MCCFLIKE protein (BA_56 47.9 22 0.00077 33.2 5.3 72 295-392 63-136 (331)
186 3dhn_A NAD-dependent epimerase 47.6 16 0.00056 31.5 4.2 34 7-44 4-37 (227)
187 2h78_A Hibadh, 3-hydroxyisobut 47.0 15 0.00052 33.6 4.0 33 6-43 2-34 (302)
188 3hwr_A 2-dehydropantoate 2-red 47.0 15 0.0005 34.1 3.9 43 5-52 17-59 (318)
189 3dfz_A SIRC, precorrin-2 dehyd 46.9 1.4E+02 0.0049 25.8 11.8 157 271-465 23-185 (223)
190 1yt5_A Inorganic polyphosphate 46.8 13 0.00043 33.4 3.3 52 362-443 41-95 (258)
191 3m6m_D Sensory/regulatory prot 46.7 25 0.00087 27.5 4.9 40 108-147 50-100 (143)
192 3mjf_A Phosphoribosylamine--gl 46.7 18 0.00061 35.3 4.6 26 6-36 2-27 (431)
193 3gi1_A LBP, laminin-binding pr 46.1 97 0.0033 28.0 9.3 41 104-144 216-258 (286)
194 2zki_A 199AA long hypothetical 46.0 20 0.0007 30.3 4.4 37 6-43 3-40 (199)
195 3f6p_A Transcriptional regulat 45.9 35 0.0012 25.6 5.5 42 107-148 37-84 (120)
196 1evy_A Glycerol-3-phosphate de 45.7 8.1 0.00028 36.7 1.9 35 5-44 13-47 (366)
197 3t6k_A Response regulator rece 45.6 36 0.0012 26.2 5.7 40 108-147 40-88 (136)
198 2dwc_A PH0318, 433AA long hypo 45.5 1.9E+02 0.0067 27.6 12.1 35 6-45 18-52 (433)
199 2qyt_A 2-dehydropantoate 2-red 45.3 8.9 0.00031 35.4 2.1 34 5-43 6-45 (317)
200 3vps_A TUNA, NAD-dependent epi 45.2 19 0.00065 32.9 4.4 39 1-43 1-39 (321)
201 2yrx_A Phosphoribosylglycinami 44.7 90 0.0031 30.3 9.5 33 6-43 20-53 (451)
202 4dll_A 2-hydroxy-3-oxopropiona 44.6 23 0.0008 32.8 4.9 34 5-43 29-62 (320)
203 1gsa_A Glutathione synthetase; 44.1 19 0.00065 32.9 4.2 38 7-44 1-41 (316)
204 3k96_A Glycerol-3-phosphate de 43.9 12 0.00041 35.5 2.8 35 5-44 27-61 (356)
205 3r6d_A NAD-dependent epimerase 43.3 25 0.00087 30.1 4.7 36 6-44 3-39 (221)
206 3doj_A AT3G25530, dehydrogenas 43.3 16 0.00056 33.6 3.6 34 5-43 19-52 (310)
207 3rot_A ABC sugar transporter, 43.2 1.6E+02 0.0056 26.0 10.6 31 114-144 59-93 (297)
208 1f0y_A HCDH, L-3-hydroxyacyl-C 43.1 14 0.00048 33.9 3.1 34 5-43 13-46 (302)
209 3f6r_A Flavodoxin; FMN binding 42.4 27 0.00094 27.8 4.5 39 7-45 1-40 (148)
210 4eg0_A D-alanine--D-alanine li 41.9 41 0.0014 30.9 6.2 39 7-45 13-55 (317)
211 4h1h_A LMO1638 protein; MCCF-l 41.8 33 0.0011 32.0 5.4 72 295-392 63-136 (327)
212 3zzm_A Bifunctional purine bio 41.5 57 0.0019 32.1 7.0 44 5-53 7-50 (523)
213 1rw7_A YDR533CP; alpha-beta sa 41.4 47 0.0016 29.2 6.2 38 7-44 3-51 (243)
214 3q9l_A Septum site-determining 41.3 28 0.00094 30.7 4.7 39 7-45 1-41 (260)
215 2vpq_A Acetyl-COA carboxylase; 41.3 58 0.002 31.6 7.5 32 8-44 2-33 (451)
216 2hy5_B Intracellular sulfur ox 41.2 32 0.0011 27.3 4.5 43 9-51 7-52 (136)
217 1cp2_A CP2, nitrogenase iron p 41.2 26 0.00087 31.3 4.5 37 8-44 2-38 (269)
218 2yvq_A Carbamoyl-phosphate syn 41.0 59 0.002 25.9 6.2 96 11-142 27-130 (143)
219 3s2u_A UDP-N-acetylglucosamine 41.0 33 0.0011 32.3 5.5 27 362-390 92-121 (365)
220 1pzg_A LDH, lactate dehydrogen 40.8 15 0.0005 34.5 2.8 37 3-44 5-42 (331)
221 3jy6_A Transcriptional regulat 40.7 1.8E+02 0.0063 25.3 11.0 43 1-43 1-45 (276)
222 3sr3_A Microcin immunity prote 40.5 35 0.0012 31.9 5.3 72 295-392 64-137 (336)
223 3pid_A UDP-glucose 6-dehydroge 40.5 16 0.00054 35.6 3.1 34 4-43 33-66 (432)
224 1g3q_A MIND ATPase, cell divis 40.2 31 0.0011 29.9 4.8 38 8-45 2-41 (237)
225 3g1w_A Sugar ABC transporter; 39.6 2E+02 0.0069 25.5 10.7 37 6-42 3-41 (305)
226 2ip4_A PURD, phosphoribosylami 39.5 1.2E+02 0.0041 28.9 9.4 31 8-43 1-32 (417)
227 3end_A Light-independent proto 39.5 33 0.0011 31.3 5.1 40 6-45 40-79 (307)
228 3ic5_A Putative saccharopine d 38.8 23 0.00078 26.6 3.3 33 6-43 4-37 (118)
229 1zl0_A Hypothetical protein PA 38.6 44 0.0015 30.8 5.7 74 294-393 64-139 (311)
230 2l2q_A PTS system, cellobiose- 38.1 43 0.0015 25.2 4.7 37 6-42 3-39 (109)
231 3c3m_A Response regulator rece 38.0 54 0.0018 25.2 5.5 38 109-146 40-86 (138)
232 3giu_A Pyrrolidone-carboxylate 37.7 30 0.001 30.0 4.1 28 6-33 2-31 (215)
233 3qvl_A Putative hydantoin race 37.6 1.2E+02 0.0041 26.7 8.2 31 113-143 66-97 (245)
234 1dbw_A Transcriptional regulat 37.5 61 0.0021 24.3 5.7 42 107-148 38-86 (126)
235 3hr8_A Protein RECA; alpha and 37.5 34 0.0012 32.3 4.8 38 10-47 64-101 (356)
236 3rg8_A Phosphoribosylaminoimid 37.4 1.7E+02 0.0057 23.8 9.0 136 283-466 4-149 (159)
237 2afh_E Nitrogenase iron protei 37.4 35 0.0012 30.8 4.8 38 7-44 2-39 (289)
238 1ydg_A Trp repressor binding p 36.9 45 0.0015 28.4 5.3 38 6-43 5-43 (211)
239 2r6j_A Eugenol synthase 1; phe 36.9 38 0.0013 31.0 5.0 33 9-45 13-45 (318)
240 2q62_A ARSH; alpha/beta, flavo 36.9 48 0.0016 29.4 5.4 40 4-43 31-73 (247)
241 1wcv_1 SOJ, segregation protei 36.9 25 0.00085 31.2 3.7 41 6-46 4-46 (257)
242 2b8t_A Thymidine kinase; deoxy 36.7 68 0.0023 27.9 6.3 39 8-46 12-51 (223)
243 3cky_A 2-hydroxymethyl glutara 36.6 35 0.0012 31.0 4.7 32 6-42 3-34 (301)
244 3obb_A Probable 3-hydroxyisobu 36.4 35 0.0012 31.3 4.6 31 7-42 3-33 (300)
245 2dpo_A L-gulonate 3-dehydrogen 36.3 20 0.00068 33.3 3.0 34 5-43 4-37 (319)
246 3nhm_A Response regulator; pro 36.3 68 0.0023 24.2 5.8 40 107-146 38-86 (133)
247 3l7i_A Teichoic acid biosynthe 36.1 32 0.0011 36.1 4.8 116 350-485 603-719 (729)
248 3ew7_A LMO0794 protein; Q8Y8U8 36.0 25 0.00085 30.0 3.4 33 8-44 1-33 (221)
249 3fwz_A Inner membrane protein 35.8 17 0.00059 28.8 2.1 34 7-45 7-40 (140)
250 2o1e_A YCDH; alpha-beta protei 35.7 1.6E+02 0.0056 26.9 9.1 40 105-144 228-269 (312)
251 2c5m_A CTP synthase; cytidine 35.5 26 0.00088 31.2 3.2 42 6-47 21-65 (294)
252 3qha_A Putative oxidoreductase 35.5 19 0.00065 32.9 2.6 32 7-43 15-46 (296)
253 3qsg_A NAD-binding phosphogluc 35.4 18 0.00062 33.4 2.5 34 5-43 22-56 (312)
254 1yb4_A Tartronic semialdehyde 35.4 32 0.0011 31.1 4.2 32 6-42 2-33 (295)
255 1tvm_A PTS system, galactitol- 35.4 81 0.0028 23.9 5.9 38 5-42 19-57 (113)
256 3u9l_A 3-oxoacyl-[acyl-carrier 35.4 1.3E+02 0.0046 27.5 8.6 32 9-43 6-37 (324)
257 3pdu_A 3-hydroxyisobutyrate de 35.1 25 0.00084 31.9 3.4 32 7-43 1-32 (287)
258 2zts_A Putative uncharacterize 35.1 38 0.0013 29.5 4.6 45 8-52 31-76 (251)
259 2raf_A Putative dinucleotide-b 34.9 25 0.00087 30.1 3.2 34 5-43 17-50 (209)
260 2r85_A PURP protein PF1517; AT 34.9 33 0.0011 31.6 4.3 33 7-45 2-34 (334)
261 3lrx_A Putative hydrogenase; a 34.9 29 0.001 28.2 3.5 36 7-45 23-58 (158)
262 1hjr_A Holliday junction resol 34.9 55 0.0019 26.7 5.0 50 100-149 43-107 (158)
263 2qk4_A Trifunctional purine bi 34.7 1.3E+02 0.0045 29.0 8.9 32 8-44 25-57 (452)
264 4e7p_A Response regulator; DNA 34.7 65 0.0022 25.2 5.6 43 106-148 56-105 (150)
265 1pno_A NAD(P) transhydrogenase 34.7 40 0.0014 27.6 4.0 38 8-45 24-64 (180)
266 1zgz_A Torcad operon transcrip 34.6 65 0.0022 23.8 5.4 42 107-148 37-84 (122)
267 3a10_A Response regulator; pho 34.5 83 0.0028 23.0 6.0 38 109-146 38-82 (116)
268 1hyq_A MIND, cell division inh 34.5 36 0.0012 30.1 4.4 37 9-45 4-41 (263)
269 3oti_A CALG3; calicheamicin, T 34.5 1.4E+02 0.0047 28.1 8.8 39 8-46 232-274 (398)
270 3nbm_A PTS system, lactose-spe 34.4 49 0.0017 25.0 4.4 38 5-42 4-41 (108)
271 1d4o_A NADP(H) transhydrogenas 34.4 41 0.0014 27.7 4.0 38 8-45 23-63 (184)
272 1q57_A DNA primase/helicase; d 34.3 1.7E+02 0.0058 28.8 9.7 42 9-50 244-286 (503)
273 4e12_A Diketoreductase; oxidor 34.2 30 0.001 31.3 3.8 33 6-43 3-35 (283)
274 4e5v_A Putative THUA-like prot 34.1 49 0.0017 30.0 5.1 39 5-44 2-43 (281)
275 4hb9_A Similarities with proba 34.0 24 0.00081 33.5 3.2 29 8-41 2-30 (412)
276 2ph1_A Nucleotide-binding prot 34.0 43 0.0015 29.7 4.8 42 6-47 16-59 (262)
277 1ehi_A LMDDL2, D-alanine:D-lac 33.9 38 0.0013 32.1 4.6 38 6-43 2-44 (377)
278 4hps_A Pyrrolidone-carboxylate 33.8 22 0.00075 31.1 2.6 30 5-34 21-52 (228)
279 1u7z_A Coenzyme A biosynthesis 33.7 47 0.0016 29.0 4.8 22 23-44 36-57 (226)
280 2qv7_A Diacylglycerol kinase D 33.7 52 0.0018 30.6 5.5 83 281-392 26-114 (337)
281 1eiw_A Hypothetical protein MT 33.6 50 0.0017 25.1 4.3 66 359-443 35-109 (111)
282 3g79_A NDP-N-acetyl-D-galactos 33.5 42 0.0014 33.1 4.9 36 5-45 16-53 (478)
283 3l4b_C TRKA K+ channel protien 33.5 14 0.00049 31.9 1.4 32 8-44 1-32 (218)
284 3icc_A Putative 3-oxoacyl-(acy 33.4 2.3E+02 0.0079 24.3 11.0 35 8-45 7-41 (255)
285 2vrn_A Protease I, DR1199; cys 33.4 84 0.0029 26.1 6.3 39 5-44 7-45 (190)
286 3s40_A Diacylglycerol kinase; 33.4 47 0.0016 30.4 5.0 82 281-392 10-97 (304)
287 3e8x_A Putative NAD-dependent 33.4 48 0.0016 28.6 4.9 36 5-44 19-54 (236)
288 1u11_A PURE (N5-carboxyaminoim 33.3 2.1E+02 0.0072 23.8 8.9 143 282-470 22-176 (182)
289 2lnd_A De novo designed protei 33.3 41 0.0014 23.5 3.3 49 383-443 50-100 (112)
290 3uve_A Carveol dehydrogenase ( 33.2 1.9E+02 0.0064 25.7 9.2 32 9-43 12-43 (286)
291 3cx3_A Lipoprotein; zinc-bindi 33.1 1.5E+02 0.0052 26.6 8.4 39 105-143 215-255 (284)
292 1ks9_A KPA reductase;, 2-dehyd 33.0 27 0.00091 31.5 3.2 31 8-43 1-31 (291)
293 3b6i_A Flavoprotein WRBA; flav 32.9 50 0.0017 27.6 4.8 38 7-44 1-40 (198)
294 1tmy_A CHEY protein, TMY; chem 32.9 62 0.0021 23.9 5.0 39 110-148 41-86 (120)
295 3of5_A Dethiobiotin synthetase 32.8 51 0.0017 28.7 4.9 37 6-42 3-40 (228)
296 3l4e_A Uncharacterized peptida 32.7 71 0.0024 27.3 5.7 46 271-316 18-63 (206)
297 1qkk_A DCTD, C4-dicarboxylate 32.7 1.7E+02 0.0059 22.6 12.3 47 383-443 74-120 (155)
298 1pq4_A Periplasmic binding pro 32.6 2.3E+02 0.0078 25.5 9.5 42 105-146 226-269 (291)
299 2gdz_A NAD+-dependent 15-hydro 32.3 77 0.0026 28.0 6.2 39 1-43 1-39 (267)
300 3b2n_A Uncharacterized protein 32.3 61 0.0021 24.7 4.9 42 107-148 40-88 (133)
301 2hy5_A Putative sulfurtransfer 32.3 85 0.0029 24.4 5.7 40 9-48 2-45 (130)
302 2wm1_A 2-amino-3-carboxymucona 32.2 35 0.0012 31.6 4.0 47 269-318 127-176 (336)
303 3d1l_A Putative NADP oxidoredu 32.2 19 0.00065 32.2 2.0 37 1-42 4-41 (266)
304 4e21_A 6-phosphogluconate dehy 32.2 29 0.00098 32.8 3.3 34 5-43 20-53 (358)
305 2fb6_A Conserved hypothetical 32.1 53 0.0018 25.2 4.3 41 8-48 8-52 (117)
306 3c1o_A Eugenol synthase; pheny 32.1 46 0.0016 30.4 4.8 35 7-45 4-38 (321)
307 2hmt_A YUAA protein; RCK, KTN, 31.9 21 0.00072 27.9 2.1 33 6-43 5-37 (144)
308 2fsv_C NAD(P) transhydrogenase 31.8 46 0.0016 27.9 4.0 38 8-45 47-87 (203)
309 3ego_A Probable 2-dehydropanto 31.7 36 0.0012 31.2 3.9 41 7-53 2-43 (307)
310 3pxx_A Carveol dehydrogenase; 31.6 2E+02 0.007 25.3 9.1 32 9-43 11-42 (287)
311 1sb8_A WBPP; epimerase, 4-epim 31.6 49 0.0017 30.7 4.9 36 5-44 25-60 (352)
312 1djl_A Transhydrogenase DIII; 31.4 47 0.0016 28.0 4.0 38 8-45 46-86 (207)
313 3czc_A RMPB; alpha/beta sandwi 31.4 50 0.0017 25.0 4.0 38 5-42 16-55 (110)
314 2qxy_A Response regulator; reg 31.3 69 0.0023 24.6 5.2 41 107-148 39-86 (142)
315 1xhf_A DYE resistance, aerobic 31.2 85 0.0029 23.2 5.6 41 108-148 39-85 (123)
316 3zq6_A Putative arsenical pump 31.1 59 0.002 30.0 5.3 38 8-45 14-52 (324)
317 3ioy_A Short-chain dehydrogena 31.1 67 0.0023 29.5 5.7 34 8-44 8-41 (319)
318 1iow_A DD-ligase, DDLB, D-ALA\ 31.0 66 0.0022 29.0 5.6 38 7-44 2-43 (306)
319 2q5c_A NTRC family transcripti 31.0 48 0.0016 28.2 4.3 30 362-394 51-80 (196)
320 2an1_A Putative kinase; struct 30.8 28 0.00097 31.7 3.0 31 359-391 60-94 (292)
321 2yw2_A Phosphoribosylamine--gl 30.7 96 0.0033 29.7 7.0 31 8-43 1-32 (424)
322 2a9o_A Response regulator; ess 30.7 79 0.0027 23.2 5.3 39 110-148 39-83 (120)
323 2bon_A Lipid kinase; DAG kinas 30.6 96 0.0033 28.7 6.7 81 280-392 30-118 (332)
324 1z82_A Glycerol-3-phosphate de 30.6 32 0.0011 32.0 3.3 32 7-43 14-45 (335)
325 1xmp_A PURE, phosphoribosylami 30.5 2.3E+02 0.0077 23.3 10.9 143 281-469 11-165 (170)
326 1srr_A SPO0F, sporulation resp 30.5 65 0.0022 24.0 4.8 37 111-147 42-85 (124)
327 3bul_A Methionine synthase; tr 30.4 64 0.0022 32.6 5.6 47 6-52 97-143 (579)
328 3hdv_A Response regulator; PSI 30.2 74 0.0025 24.1 5.1 39 1-43 1-39 (136)
329 3c24_A Putative oxidoreductase 30.2 38 0.0013 30.6 3.8 32 7-43 11-43 (286)
330 1u0t_A Inorganic polyphosphate 30.2 24 0.00083 32.5 2.4 32 359-392 72-107 (307)
331 4eso_A Putative oxidoreductase 30.1 62 0.0021 28.5 5.1 32 9-43 9-40 (255)
332 1qyd_A Pinoresinol-lariciresin 30.1 51 0.0017 29.9 4.7 34 7-44 4-37 (313)
333 2gas_A Isoflavone reductase; N 30.0 43 0.0015 30.2 4.2 35 7-45 2-36 (307)
334 1hdo_A Biliverdin IX beta redu 29.9 83 0.0028 26.1 5.8 32 8-43 4-35 (206)
335 2rjn_A Response regulator rece 29.8 1.4E+02 0.0049 23.1 7.0 47 383-443 78-125 (154)
336 2pl1_A Transcriptional regulat 29.7 1.1E+02 0.0036 22.5 5.9 42 107-148 35-83 (121)
337 2q37_A OHCU decarboxylase; 2-O 29.4 1.8E+02 0.0061 24.3 7.4 54 396-463 117-170 (181)
338 3k9g_A PF-32 protein; ssgcid, 29.4 48 0.0016 29.4 4.3 41 6-47 25-67 (267)
339 2pnf_A 3-oxoacyl-[acyl-carrier 29.3 77 0.0026 27.4 5.6 40 1-44 1-40 (248)
340 2w70_A Biotin carboxylase; lig 29.3 1.5E+02 0.0051 28.6 8.2 31 8-43 3-33 (449)
341 3sc4_A Short chain dehydrogena 29.3 2.7E+02 0.0092 24.7 9.5 33 9-44 10-42 (285)
342 1cyd_A Carbonyl reductase; sho 29.2 91 0.0031 26.9 6.1 39 1-43 1-39 (244)
343 4ep4_A Crossover junction endo 29.2 1.1E+02 0.0036 25.2 5.9 53 97-149 44-111 (166)
344 2pn1_A Carbamoylphosphate synt 29.2 62 0.0021 29.7 5.1 34 5-44 2-37 (331)
345 3pgx_A Carveol dehydrogenase; 29.1 2.7E+02 0.0092 24.5 9.4 32 9-43 16-47 (280)
346 3cu5_A Two component transcrip 29.1 83 0.0028 24.2 5.3 39 107-145 40-85 (141)
347 2c20_A UDP-glucose 4-epimerase 29.1 35 0.0012 31.3 3.4 33 7-43 1-33 (330)
348 1lld_A L-lactate dehydrogenase 29.0 28 0.00096 32.1 2.7 37 4-45 4-42 (319)
349 3lk7_A UDP-N-acetylmuramoylala 28.9 63 0.0022 31.5 5.3 34 5-43 7-40 (451)
350 3crn_A Response regulator rece 28.8 89 0.003 23.6 5.4 39 109-147 40-85 (132)
351 3ai3_A NADPH-sorbose reductase 28.8 1E+02 0.0034 27.1 6.4 39 1-43 1-39 (263)
352 3cz5_A Two-component response 28.7 1.1E+02 0.0037 23.8 6.0 42 107-148 42-90 (153)
353 2etv_A Iron(III) ABC transport 28.7 39 0.0013 31.6 3.7 31 114-144 94-125 (346)
354 2rh8_A Anthocyanidin reductase 28.5 51 0.0018 30.3 4.5 32 8-43 10-41 (338)
355 4fu0_A D-alanine--D-alanine li 28.5 30 0.001 32.6 2.8 39 5-43 1-43 (357)
356 3sx2_A Putative 3-ketoacyl-(ac 28.4 2.1E+02 0.0071 25.2 8.5 32 9-43 14-45 (278)
357 3rpe_A MDAB, modulator of drug 28.4 69 0.0024 27.7 4.9 39 5-43 23-68 (218)
358 3ea0_A ATPase, para family; al 28.4 43 0.0015 29.1 3.7 40 7-46 3-45 (245)
359 2q3e_A UDP-glucose 6-dehydroge 28.3 47 0.0016 32.6 4.3 33 6-43 4-38 (467)
360 2v4n_A Multifunctional protein 28.3 63 0.0022 28.7 4.6 45 7-53 1-45 (254)
361 3f2v_A General stress protein 28.3 40 0.0014 28.6 3.3 36 7-42 1-37 (192)
362 3l77_A Short-chain alcohol deh 28.2 63 0.0021 27.9 4.8 34 8-44 2-35 (235)
363 1qkk_A DCTD, C4-dicarboxylate 28.2 76 0.0026 24.9 5.0 42 107-148 38-86 (155)
364 2bru_C NAD(P) transhydrogenase 28.1 46 0.0016 27.4 3.3 38 8-45 31-71 (186)
365 1p6q_A CHEY2; chemotaxis, sign 28.0 87 0.003 23.4 5.1 41 107-147 42-91 (129)
366 3enk_A UDP-glucose 4-epimerase 28.0 52 0.0018 30.2 4.4 34 6-43 4-37 (341)
367 3ius_A Uncharacterized conserv 28.0 47 0.0016 29.7 4.0 34 7-45 5-38 (286)
368 3grc_A Sensor protein, kinase; 27.9 70 0.0024 24.4 4.6 40 106-145 40-88 (140)
369 1o97_C Electron transferring f 27.8 68 0.0023 28.7 4.9 41 106-146 102-148 (264)
370 2pju_A Propionate catabolism o 27.7 60 0.002 28.3 4.4 29 363-394 64-92 (225)
371 2qzj_A Two-component response 27.7 74 0.0025 24.3 4.7 40 108-147 40-85 (136)
372 3rht_A (gatase1)-like protein; 27.7 39 0.0013 30.2 3.2 38 6-47 3-42 (259)
373 1nff_A Putative oxidoreductase 27.6 1E+02 0.0035 27.1 6.2 39 1-43 1-39 (260)
374 3tla_A MCCF; serine protease, 27.6 56 0.0019 31.0 4.5 72 295-392 94-167 (371)
375 2a3d_A Protein (de novo three- 27.6 1.3E+02 0.0043 19.4 4.7 21 449-472 4-24 (73)
376 1jbe_A Chemotaxis protein CHEY 27.6 1.1E+02 0.0038 22.7 5.7 41 107-147 40-89 (128)
377 2z1n_A Dehydrogenase; reductas 27.3 1.1E+02 0.0038 26.8 6.4 39 1-43 1-39 (260)
378 2yvk_A Methylthioribose-1-phos 27.3 1.3E+02 0.0045 28.4 6.9 20 128-147 277-296 (374)
379 1e4e_A Vancomycin/teicoplanin 27.2 36 0.0012 31.7 3.1 37 6-43 2-43 (343)
380 1dhr_A Dihydropteridine reduct 27.2 84 0.0029 27.2 5.4 39 1-43 1-39 (241)
381 3rqi_A Response regulator prot 27.2 66 0.0023 26.4 4.5 42 107-148 42-90 (184)
382 3dqp_A Oxidoreductase YLBE; al 27.1 33 0.0011 29.3 2.6 33 8-44 1-33 (219)
383 3eul_A Possible nitrate/nitrit 27.1 76 0.0026 24.8 4.8 43 106-148 51-100 (152)
384 1b93_A Protein (methylglyoxal 27.1 2.3E+02 0.0077 22.9 7.3 95 7-142 11-118 (152)
385 3f67_A Putative dienelactone h 27.0 84 0.0029 26.5 5.4 36 8-43 32-67 (241)
386 2ark_A Flavodoxin; FMN, struct 27.0 67 0.0023 26.7 4.5 41 5-45 2-44 (188)
387 2vns_A Metalloreductase steap3 26.8 37 0.0013 29.2 2.9 33 6-43 27-59 (215)
388 2z1m_A GDP-D-mannose dehydrata 26.6 63 0.0021 29.6 4.7 34 7-44 3-36 (345)
389 1qv9_A F420-dependent methylen 26.6 1.2E+02 0.0041 26.5 5.8 42 107-148 55-102 (283)
390 1w2w_B 5-methylthioribose-1-ph 26.6 74 0.0025 26.9 4.6 26 27-52 22-47 (191)
391 3d3w_A L-xylulose reductase; u 26.5 1.2E+02 0.0041 26.1 6.4 39 1-43 1-39 (244)
392 3ruf_A WBGU; rossmann fold, UD 26.5 61 0.0021 29.9 4.6 35 6-44 24-58 (351)
393 4ezb_A Uncharacterized conserv 26.3 39 0.0013 31.2 3.1 32 7-43 24-56 (317)
394 3lp6_A Phosphoribosylaminoimid 26.3 86 0.0029 25.9 4.7 51 1-52 1-53 (174)
395 3pef_A 6-phosphogluconate dehy 26.2 43 0.0015 30.2 3.3 31 8-43 2-32 (287)
396 2i87_A D-alanine-D-alanine lig 26.2 32 0.0011 32.5 2.5 38 6-43 2-43 (364)
397 3bfv_A CAPA1, CAPB2, membrane 26.2 68 0.0023 28.7 4.7 41 6-46 80-122 (271)
398 3dtt_A NADP oxidoreductase; st 26.1 44 0.0015 29.4 3.3 34 5-43 17-50 (245)
399 3ax6_A Phosphoribosylaminoimid 26.1 91 0.0031 29.3 5.8 33 7-44 1-33 (380)
400 2b69_A UDP-glucuronate decarbo 26.1 56 0.0019 30.2 4.2 35 5-43 25-59 (343)
401 3cfy_A Putative LUXO repressor 26.1 86 0.0029 24.0 4.8 38 110-147 42-86 (137)
402 3edm_A Short chain dehydrogena 26.0 1.1E+02 0.0037 26.9 6.0 34 8-44 8-41 (259)
403 4hn9_A Iron complex transport 26.0 59 0.002 30.1 4.3 37 110-146 110-146 (335)
404 1ihu_A Arsenical pump-driving 26.0 61 0.0021 32.8 4.8 45 1-45 1-46 (589)
405 3psh_A Protein HI_1472; substr 25.9 59 0.002 29.9 4.3 33 112-144 80-113 (326)
406 2l82_A Designed protein OR32; 25.8 1.4E+02 0.0049 22.1 5.4 34 283-320 3-36 (162)
407 1mv8_A GMD, GDP-mannose 6-dehy 25.8 61 0.0021 31.4 4.5 31 8-43 1-31 (436)
408 3uhj_A Probable glycerol dehyd 25.8 1.6E+02 0.0056 27.9 7.5 40 107-146 97-139 (387)
409 1y1p_A ARII, aldehyde reductas 25.7 71 0.0024 29.2 4.9 36 5-44 9-44 (342)
410 1fjh_A 3alpha-hydroxysteroid d 25.7 83 0.0028 27.5 5.2 33 8-43 1-33 (257)
411 3md9_A Hemin-binding periplasm 25.5 61 0.0021 28.5 4.2 35 110-144 53-89 (255)
412 2w36_A Endonuclease V; hypoxan 25.5 1.3E+02 0.0043 26.2 5.9 40 106-145 91-139 (225)
413 1t1j_A Hypothetical protein; s 25.5 95 0.0033 24.2 4.7 34 6-39 6-47 (125)
414 3lzw_A Ferredoxin--NADP reduct 25.5 22 0.00076 32.6 1.2 36 5-45 5-40 (332)
415 4imr_A 3-oxoacyl-(acyl-carrier 25.5 3.5E+02 0.012 23.8 9.7 32 9-43 34-65 (275)
416 3r5x_A D-alanine--D-alanine li 25.5 50 0.0017 30.0 3.7 47 6-52 2-52 (307)
417 2pju_A Propionate catabolism o 25.4 60 0.0021 28.3 4.0 35 108-145 146-180 (225)
418 1zxx_A 6-phosphofructokinase; 25.3 4E+02 0.014 24.4 10.7 117 7-143 1-122 (319)
419 3orf_A Dihydropteridine reduct 25.3 72 0.0025 27.9 4.6 35 6-43 20-54 (251)
420 3i6i_A Putative leucoanthocyan 25.3 72 0.0025 29.5 4.9 37 5-45 8-44 (346)
421 3e61_A Putative transcriptiona 25.3 2.7E+02 0.0093 24.1 8.7 35 110-144 58-93 (277)
422 3ksm_A ABC-type sugar transpor 25.2 3.3E+02 0.011 23.4 9.4 36 109-144 52-91 (276)
423 4dgk_A Phytoene dehydrogenase; 25.1 29 0.00099 34.2 2.1 32 7-43 1-32 (501)
424 1y6j_A L-lactate dehydrogenase 25.1 65 0.0022 29.7 4.4 39 1-44 1-41 (318)
425 1txg_A Glycerol-3-phosphate de 25.1 35 0.0012 31.5 2.6 31 8-43 1-31 (335)
426 1efv_B Electron transfer flavo 25.1 82 0.0028 28.0 4.9 41 106-146 106-152 (255)
427 1xjc_A MOBB protein homolog; s 25.0 1.2E+02 0.004 25.0 5.5 39 7-45 4-42 (169)
428 2j48_A Two-component sensor ki 25.0 96 0.0033 22.4 4.8 38 109-146 38-84 (119)
429 1jay_A Coenzyme F420H2:NADP+ o 25.0 47 0.0016 28.2 3.2 32 8-43 1-32 (212)
430 2pd6_A Estradiol 17-beta-dehyd 24.9 1.3E+02 0.0045 26.2 6.4 39 1-43 1-39 (264)
431 3oh8_A Nucleoside-diphosphate 24.9 59 0.002 32.3 4.4 35 6-44 146-180 (516)
432 3g17_A Similar to 2-dehydropan 24.9 19 0.00066 32.8 0.7 32 8-44 3-34 (294)
433 1t9k_A Probable methylthioribo 24.9 1.4E+02 0.0049 27.8 6.7 20 128-147 252-271 (347)
434 1oi4_A Hypothetical protein YH 24.8 1.6E+02 0.0053 24.6 6.5 40 5-45 21-60 (193)
435 3l18_A Intracellular protease 24.8 1.5E+02 0.0052 23.8 6.3 39 6-45 1-39 (168)
436 2o3j_A UDP-glucose 6-dehydroge 24.8 62 0.0021 31.9 4.4 34 5-43 7-42 (481)
437 3m9w_A D-xylose-binding peripl 24.8 3.7E+02 0.012 23.8 10.7 34 112-145 54-91 (313)
438 3guy_A Short-chain dehydrogena 24.8 57 0.002 28.1 3.8 33 8-43 1-33 (230)
439 2an1_A Putative kinase; struct 24.6 66 0.0023 29.1 4.3 36 7-42 5-41 (292)
440 2hna_A Protein MIOC, flavodoxi 24.6 95 0.0032 24.4 4.9 36 7-42 1-37 (147)
441 3n53_A Response regulator rece 24.6 67 0.0023 24.6 3.9 40 107-146 37-85 (140)
442 3e1t_A Halogenase; flavoprotei 24.6 32 0.0011 34.2 2.3 39 1-44 1-39 (512)
443 3qvo_A NMRA family protein; st 24.5 54 0.0019 28.4 3.6 33 8-43 23-56 (236)
444 3h2s_A Putative NADH-flavin re 24.5 63 0.0022 27.4 4.0 33 8-44 1-33 (224)
445 2b4a_A BH3024; flavodoxin-like 24.4 99 0.0034 23.5 4.9 39 106-144 49-95 (138)
446 1u9c_A APC35852; structural ge 24.3 1.3E+02 0.0045 25.7 6.1 37 8-44 6-51 (224)
447 1u94_A RECA protein, recombina 24.3 2E+02 0.007 26.8 7.8 40 8-47 64-103 (356)
448 3hcw_A Maltose operon transcri 24.3 3.5E+02 0.012 23.8 9.3 37 108-144 60-98 (295)
449 2z04_A Phosphoribosylaminoimid 24.3 73 0.0025 29.8 4.7 34 7-45 1-34 (365)
450 1u0t_A Inorganic polyphosphate 24.2 68 0.0023 29.4 4.3 37 7-43 4-41 (307)
451 3ksu_A 3-oxoacyl-acyl carrier 24.2 1.1E+02 0.0037 27.0 5.6 32 9-43 12-43 (262)
452 4g65_A TRK system potassium up 24.2 17 0.0006 35.7 0.2 33 7-44 3-35 (461)
453 3trh_A Phosphoribosylaminoimid 24.1 3E+02 0.01 22.6 10.7 141 281-467 6-158 (169)
454 2zay_A Response regulator rece 24.0 80 0.0027 24.4 4.3 42 107-148 43-93 (147)
455 2d1p_A TUSD, hypothetical UPF0 24.0 1.8E+02 0.0062 22.9 6.3 40 7-46 12-55 (140)
456 3tox_A Short chain dehydrogena 23.9 76 0.0026 28.5 4.5 33 8-43 8-40 (280)
457 1d1q_A Tyrosine phosphatase (E 23.8 1.2E+02 0.004 24.7 5.3 35 1-35 1-36 (161)
458 1kgs_A DRRD, DNA binding respo 23.7 1.2E+02 0.0041 25.6 5.7 39 110-148 40-85 (225)
459 2q8p_A Iron-regulated surface 23.7 65 0.0022 28.3 4.0 34 112-145 56-90 (260)
460 1xgk_A Nitrogen metabolite rep 23.6 74 0.0025 29.7 4.6 35 7-45 5-39 (352)
461 3e82_A Putative oxidoreductase 23.6 1.4E+02 0.0046 28.0 6.5 42 1-46 1-43 (364)
462 3s40_A Diacylglycerol kinase; 23.6 1.3E+02 0.0043 27.4 6.1 42 5-46 6-50 (304)
463 3r6w_A FMN-dependent NADH-azor 23.5 63 0.0021 27.6 3.7 37 7-43 1-43 (212)
464 3c97_A Signal transduction his 23.5 1.4E+02 0.0047 22.7 5.6 27 109-135 47-75 (140)
465 1qyc_A Phenylcoumaran benzylic 23.5 67 0.0023 29.0 4.2 34 7-44 4-37 (308)
466 1efp_B ETF, protein (electron 23.5 91 0.0031 27.6 4.8 40 107-146 104-149 (252)
467 3dii_A Short-chain dehydrogena 23.4 84 0.0029 27.4 4.7 33 8-43 2-34 (247)
468 1i36_A Conserved hypothetical 23.4 48 0.0016 29.4 3.1 29 8-41 1-29 (264)
469 3i4f_A 3-oxoacyl-[acyl-carrier 23.4 1.1E+02 0.0037 26.9 5.5 40 1-44 1-40 (264)
470 1zi8_A Carboxymethylenebutenol 23.4 1.1E+02 0.0036 25.7 5.3 36 8-43 28-63 (236)
471 3hzh_A Chemotaxis response reg 23.4 99 0.0034 24.3 4.8 42 106-147 71-121 (157)
472 1ozh_A ALS, acetolactate synth 23.4 1.8E+02 0.0061 29.2 7.6 77 299-391 14-106 (566)
473 2qv0_A Protein MRKE; structura 23.3 1.3E+02 0.0045 22.9 5.5 30 107-136 46-77 (143)
474 1rkx_A CDP-glucose-4,6-dehydra 23.3 69 0.0024 29.7 4.3 34 6-43 8-41 (357)
475 3t4x_A Oxidoreductase, short c 23.3 1.2E+02 0.0039 26.9 5.7 32 9-43 11-42 (267)
476 3h7a_A Short chain dehydrogena 23.3 1.2E+02 0.0042 26.4 5.8 39 1-43 1-39 (252)
477 3dff_A Teicoplanin pseudoaglyc 23.2 86 0.0029 28.1 4.7 42 102-143 134-185 (273)
478 2cvz_A Dehydrogenase, 3-hydrox 23.2 57 0.0019 29.3 3.6 31 7-43 1-31 (289)
479 2a33_A Hypothetical protein; s 23.2 1.1E+02 0.0039 26.3 5.2 40 5-44 11-54 (215)
480 1byi_A Dethiobiotin synthase; 23.1 89 0.003 26.6 4.7 33 9-41 3-36 (224)
481 2pv7_A T-protein [includes: ch 23.1 2.7E+02 0.0093 25.0 8.3 32 8-44 22-54 (298)
482 2a0u_A Initiation factor 2B; S 23.1 2.7E+02 0.0092 26.4 8.2 20 128-147 281-300 (383)
483 3aek_B Light-independent proto 23.1 54 0.0018 32.8 3.6 34 107-143 340-373 (525)
484 3slg_A PBGP3 protein; structur 23.0 45 0.0015 31.2 2.9 36 5-44 22-58 (372)
485 1zmt_A Haloalcohol dehalogenas 22.9 78 0.0027 27.7 4.4 32 8-42 1-32 (254)
486 4e3z_A Putative oxidoreductase 22.9 90 0.0031 27.6 4.9 35 6-43 24-58 (272)
487 1t5b_A Acyl carrier protein ph 22.9 84 0.0029 26.2 4.4 37 7-43 1-43 (201)
488 3nva_A CTP synthase; rossman f 22.9 86 0.0029 31.2 4.8 42 7-48 2-46 (535)
489 2y0c_A BCEC, UDP-glucose dehyd 22.8 51 0.0018 32.5 3.3 33 6-43 7-39 (478)
490 3cmw_A Protein RECA, recombina 22.7 3.5E+02 0.012 31.4 10.3 43 8-50 384-426 (1706)
491 2gf2_A Hibadh, 3-hydroxyisobut 22.6 54 0.0019 29.6 3.3 31 8-43 1-31 (296)
492 3dfi_A Pseudoaglycone deacetyl 22.5 98 0.0033 27.7 4.9 42 102-143 131-182 (270)
493 2xdq_B Light-independent proto 22.5 56 0.0019 32.5 3.6 34 107-143 363-396 (511)
494 2x4g_A Nucleoside-diphosphate- 22.5 1.1E+02 0.0039 27.8 5.7 35 6-44 12-46 (342)
495 2ahr_A Putative pyrroline carb 22.4 44 0.0015 29.6 2.6 33 6-43 2-34 (259)
496 3gg2_A Sugar dehydrogenase, UD 22.4 53 0.0018 32.1 3.3 32 8-44 3-34 (450)
497 2r25_B Osmosensing histidine p 22.4 1.7E+02 0.0057 22.1 5.8 34 115-148 51-92 (133)
498 1iu8_A Pyrrolidone-carboxylate 22.3 1.1E+02 0.0039 26.1 5.0 27 8-34 1-29 (206)
499 3hn7_A UDP-N-acetylmuramate-L- 22.3 69 0.0023 32.0 4.2 35 6-44 18-52 (524)
500 4hv4_A UDP-N-acetylmuramate--L 22.3 96 0.0033 30.6 5.3 33 6-42 21-53 (494)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=3.6e-64 Score=503.86 Aligned_cols=431 Identities=29% Similarity=0.482 Sum_probs=343.0
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCC--CeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCcc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANG--IQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCE 83 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (490)
+++||+++|+|++||++||+.||+.|+++| +.|||++++.....+..... ....+++|+.+| ++++++.+
T Consensus 12 ~~~hvv~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~---~~~~~i~~~~ip-----dglp~~~~ 83 (454)
T 3hbf_A 12 NLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSN---EFLPNIKYYNVH-----DGLPKGYV 83 (454)
T ss_dssp CCCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSS---CCCTTEEEEECC-----CCCCTTCC
T ss_pred CCCEEEEEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccc---cCCCCceEEecC-----CCCCCCcc
Confidence 468999999999999999999999999999 99999998765554433211 113469999987 45666654
Q ss_pred CCCCCCChhhHhhHHHHHH-hhHHHHHHHhhc--CCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhc
Q 044012 84 NLMSTSTPETTKKLFPALE-LLRPEIEKLFRE--QNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHH 160 (490)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~--~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 160 (490)
.... ....+..+...+. .+.+.+.+++++ .++|+||+|.++.|+..+|+.+|||++.++++++..+..+.+....
T Consensus 84 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 161 (454)
T 3hbf_A 84 SSGN--PREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLI 161 (454)
T ss_dssp CCSC--TTHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHH
T ss_pred ccCC--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHH
Confidence 4332 1233444444443 344455555544 5799999999999999999999999999999999888777665332
Q ss_pred CCC-CC-CCCCCce-eecCCCCCCcccCCCCCCCccccC--CCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHh
Q 044012 161 QPF-KN-IVSETQK-FIVPGLPDQVKLSRSQLPDIVKCK--STGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRR 235 (490)
Q Consensus 161 ~~~-~~-~~~~~~~-~~~p~l~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 235 (490)
... .. ......+ ..+|+++. +..++++.. +.. ...+..++....+...+++.+++||+++||+++++.+++
T Consensus 162 ~~~~~~~~~~~~~~~~~iPg~p~---~~~~dlp~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~ 237 (454)
T 3hbf_A 162 REKTGSKEVHDVKSIDVLPGFPE---LKASDLPEG-VIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNS 237 (454)
T ss_dssp HHTCCHHHHTTSSCBCCSTTSCC---BCGGGSCTT-SSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHT
T ss_pred HhhcCCCccccccccccCCCCCC---cChhhCchh-hccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHh
Confidence 111 00 0011222 34788864 677788877 432 123556677777888899999999999999999988877
Q ss_pred hhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEE
Q 044012 236 VTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIW 315 (490)
Q Consensus 236 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 315 (490)
.+ ++++.|||++...... ....+.++.+||+..+++++|||||||+...+.+++.+++.+|++.+++|||
T Consensus 238 ~~-~~v~~vGPl~~~~~~~---------~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw 307 (454)
T 3hbf_A 238 KF-KLLLNVGPFNLTTPQR---------KVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIW 307 (454)
T ss_dssp TS-SCEEECCCHHHHSCCS---------CCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEE
T ss_pred cC-CCEEEECCcccccccc---------cccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEE
Confidence 65 7999999997643211 1113577999999988899999999999998899999999999999999999
Q ss_pred EEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCccc
Q 044012 316 VVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAE 395 (490)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~D 395 (490)
+++.. .... +|++|.++. ++|+++++|+||.++|+|+++++|||||||||+.|++++|||||++|++.|
T Consensus 308 ~~~~~-------~~~~-lp~~~~~~~---~~~~~vv~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~D 376 (454)
T 3hbf_A 308 SFRGD-------PKEK-LPKGFLERT---KTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGD 376 (454)
T ss_dssp ECCSC-------HHHH-SCTTHHHHT---TTTEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTT
T ss_pred EeCCc-------chhc-CCHhHHhhc---CCceEEEeeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCccccc
Confidence 99875 3222 787887665 568999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHh-hccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 044012 396 QFNNEKLVTQV-LKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSC 474 (490)
Q Consensus 396 Q~~na~rv~e~-~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 474 (490)
|+.||++++ + +|+|+.+... .+++++|.++|+++|+ ++++++||+||+++++++++++++||+|.
T Consensus 377 Q~~Na~~v~-~~~g~Gv~l~~~-----------~~~~~~l~~av~~ll~--~~~~~~~r~~a~~l~~~~~~a~~~gGsS~ 442 (454)
T 3hbf_A 377 QGLNTILTE-SVLEIGVGVDNG-----------VLTKESIKKALELTMS--SEKGGIMRQKIVKLKESAFKAVEQNGTSA 442 (454)
T ss_dssp HHHHHHHHH-TTSCSEEECGGG-----------SCCHHHHHHHHHHHHS--SHHHHHHHHHHHHHHHHHHHHTSTTSHHH
T ss_pred HHHHHHHHH-HhhCeeEEecCC-----------CCCHHHHHHHHHHHHC--CChHHHHHHHHHHHHHHHHHhhccCCCHH
Confidence 999999995 7 6999999876 7999999999999998 56667999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 044012 475 NDLKALIEDIR 485 (490)
Q Consensus 475 ~~~~~~~~~~~ 485 (490)
.++++|+++|.
T Consensus 443 ~~l~~~v~~i~ 453 (454)
T 3hbf_A 443 MDFTTLIQIVT 453 (454)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999885
No 2
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=5.4e-60 Score=481.70 Aligned_cols=446 Identities=26% Similarity=0.455 Sum_probs=322.7
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCc--chhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTM--NARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEG 81 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (490)
.+++||+++|+|++||++|+++||++|++| ||+|||++++. +...+.+... ....+++|+.+|... .+..
T Consensus 4 ~~~~~vl~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~---~~~~~i~~~~l~~~~----~~~~ 76 (480)
T 2vch_A 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLD---SLPSSISSVFLPPVD----LTDL 76 (480)
T ss_dssp --CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC----CCTTEEEEECCCCC----CTTS
T ss_pred CCCcEEEEecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhcc---ccCCCceEEEcCCCC----CCCC
Confidence 456899999999999999999999999998 99999999987 4444443110 002378899887431 1111
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhc----CCC-cEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHh
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFRE----QNP-NCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHS 156 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~p-D~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 156 (490)
... ......+........+.+.+++++ .++ |+||+|.+..|+..+|+.+|||++.+++++......+.+
T Consensus 77 ----~~~--~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~ 150 (480)
T 2vch_A 77 ----SSS--TRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLH 150 (480)
T ss_dssp ----CTT--CCHHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHH
T ss_pred ----CCc--hhHHHHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHH
Confidence 111 122222333444555666666665 478 999999998899999999999999999999876655544
Q ss_pred hhhcC--CCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHH
Q 044012 157 LEHHQ--PFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFR 234 (490)
Q Consensus 157 ~~~~~--~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 234 (490)
+.... ......+...+..+|+++. +...+++..+..........+......++++.++++|++.+++++.+..+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~Pg~~p---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~ 227 (480)
T 2vch_A 151 LPKLDETVSCEFRELTEPLMLPGCVP---VAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQ 227 (480)
T ss_dssp HHHHHHHCCSCGGGCSSCBCCTTCCC---BCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccCCCCCC---CChHHCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHH
Confidence 32110 0000011111234555543 333344443111111123333444556677888999999999987776665
Q ss_pred hhh--CCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCc
Q 044012 235 RVT--GKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHS 312 (490)
Q Consensus 235 ~~~--~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 312 (490)
.+. .+++++|||++...... ..+..+.++.+|++..+++++|||||||+...+.+++.+++++|++.+++
T Consensus 228 ~~~~~~~~v~~vGpl~~~~~~~--------~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~ 299 (480)
T 2vch_A 228 EPGLDKPPVYPVGPLVNIGKQE--------AKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQR 299 (480)
T ss_dssp SCCTTCCCEEECCCCCCCSCSC--------C-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCE
T ss_pred hcccCCCcEEEEeccccccccc--------cCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCc
Confidence 321 26899999997642110 00124578999999987889999999999888889999999999999999
Q ss_pred eEEEEccCCCCC--C------chhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhC
Q 044012 313 FIWVVGKILKTD--D------DQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAG 384 (490)
Q Consensus 313 ~i~~~~~~~~~~--~------~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~G 384 (490)
|||+++...... + ..++...+|++|.++.. ..++++.+|+||.+||+|+++++|||||||||+.||+++|
T Consensus 300 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~G 377 (480)
T 2vch_A 300 FLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK--KRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSG 377 (480)
T ss_dssp EEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTT--TTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEECCccccccccccccccccchhhhcCHHHHHHhC--CCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcC
Confidence 999998651000 0 01222237888877766 5667777799999999999999999999999999999999
Q ss_pred CcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 385 VPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 385 vP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
||||++|++.||+.||+++++++|+|+.+... .++.+|+++|.++|+++|+ +++.++||+||++++++++
T Consensus 378 vP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~--------~~~~~~~~~l~~av~~vl~--~~~~~~~r~~a~~l~~~~~ 447 (480)
T 2vch_A 378 IPLIAWPLYAEQKMNAVLLSEDIRAALRPRAG--------DDGLVRREEVARVVKGLME--GEEGKGVRNKMKELKEAAC 447 (480)
T ss_dssp CCEEECCCSTTHHHHHHHHHHTTCCEECCCCC--------TTSCCCHHHHHHHHHHHHT--STHHHHHHHHHHHHHHHHH
T ss_pred CCEEeccccccchHHHHHHHHHhCeEEEeecc--------cCCccCHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHH
Confidence 99999999999999999963599999999653 1126899999999999998 5566799999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHh
Q 044012 465 KAVEEGGSSCNDLKALIEDIRL 486 (490)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~~~~~ 486 (490)
+++.+||++..++++|+++++.
T Consensus 448 ~a~~~gGss~~~~~~~v~~~~~ 469 (480)
T 2vch_A 448 RVLKDDGTSTKALSLVALKWKA 469 (480)
T ss_dssp HHTSTTSHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 3
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=1.1e-60 Score=488.50 Aligned_cols=454 Identities=26% Similarity=0.449 Sum_probs=318.2
Q ss_pred CCCC-CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCC-CceEEEEeeCCCCcCCC
Q 044012 1 MVSE-NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLG-REISLRILRFPSQEAGL 78 (490)
Q Consensus 1 m~~~-~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 78 (490)
|++. ++++||+++|+|++||++|++.||++|++|||+|||++++.+...+.+........+ .+++|+.+|. ++
T Consensus 1 ~~~~~~~~~~vl~~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-----~l 75 (482)
T 2pq6_A 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPD-----GL 75 (482)
T ss_dssp -------CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEECC-----CC
T ss_pred CCcccCCCCEEEEecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECCC-----CC
Confidence 5554 456899999999999999999999999999999999999887665544311100011 2788888862 33
Q ss_pred CCCccCCCCCCChhhHhhHHHHH-HhhHHHHHHHhhc-------CCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHH
Q 044012 79 PEGCENLMSTSTPETTKKLFPAL-ELLRPEIEKLFRE-------QNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFN 150 (490)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~-------~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 150 (490)
+.......... . +..+.... ......+.+++++ .++|+||+|.++.|+..+|+.+|||+|.+++++...
T Consensus 76 p~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~ 152 (482)
T 2pq6_A 76 TPMEGDGDVSQ--D-VPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACS 152 (482)
T ss_dssp C---------C--C-HHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHH
T ss_pred CCcccccCcch--h-HHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHH
Confidence 33100001011 1 11222222 2334444444442 589999999999999999999999999999998877
Q ss_pred HHHHHhhhhcCCCCCCCCCC---------c--eeecCCCCCCcccCCCCCCCccccCC---CchhhHHHHHHHhhhcccE
Q 044012 151 NCVSHSLEHHQPFKNIVSET---------Q--KFIVPGLPDQVKLSRSQLPDIVKCKS---TGFSAMFDELNNAERKSFG 216 (490)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~---------~--~~~~p~l~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 216 (490)
...+.+++.+...+..|... . ...+|+++. +..++++.+ +... ..+...+....+...+++.
T Consensus 153 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (482)
T 2pq6_A 153 LLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKN---FRLKDIVDF-IRTTNPNDIMLEFFIEVADRVNKDTT 228 (482)
T ss_dssp HHHHTTHHHHHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCS---CBGGGSCGG-GCCSCTTCHHHHHHHHHHHTCCTTCC
T ss_pred HHHHHHHHHHHhcCCCCCccccccccccccCccccCCCCCC---CchHHCchh-hccCCcccHHHHHHHHHHHhhccCCE
Confidence 65544433221111111110 0 012344332 223344443 2211 1233344455566778889
Q ss_pred EEEcchhhcChHHHHHHHhhhCCceEEeccccCC-CCCCcchhccC--CCCccCccccccccCCCCCCeEEEEEeCCccc
Q 044012 217 VLMNSFYELEPAYADHFRRVTGKKAWHLGPVSLY-NRDVDDKAERG--DKSCVSKHSCLSWLNSRKPNSVLYICFGSLTR 293 (490)
Q Consensus 217 ~~~~s~~~l~~~~~~~~~~~~~~~~~~vGpl~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~ 293 (490)
+++|++++||+++++.+++.+ +++++|||++.. ........... ...++.+.++.+|++..+++++|||||||+..
T Consensus 229 vl~nt~~~le~~~~~~~~~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~ 307 (482)
T 2pq6_A 229 ILLNTFNELESDVINALSSTI-PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTV 307 (482)
T ss_dssp EEESSCGGGGHHHHHHHHTTC-TTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSC
T ss_pred EEEcChHHHhHHHHHHHHHhC-CcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCccc
Confidence 999999999999998888776 789999999753 11100000000 11122345689999988788999999999988
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCC
Q 044012 294 FSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCG 373 (490)
Q Consensus 294 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG 373 (490)
.+.+++.+++.+|++.+++|||+++.. ....+. ..+|++|.++. ++|+++++|+||.++|+|+++++||||||
T Consensus 308 ~~~~~~~~~~~~l~~~~~~~l~~~~~~---~~~~~~-~~l~~~~~~~~---~~~~~v~~~~pq~~~L~h~~~~~~vth~G 380 (482)
T 2pq6_A 308 MTPEQLLEFAWGLANCKKSFLWIIRPD---LVIGGS-VIFSSEFTNEI---ADRGLIASWCPQDKVLNHPSIGGFLTHCG 380 (482)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECCGG---GSTTTG-GGSCHHHHHHH---TTTEEEESCCCHHHHHTSTTEEEEEECCC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcCC---cccccc-ccCcHhHHHhc---CCCEEEEeecCHHHHhcCCCCCEEEecCC
Confidence 888889999999999999999999864 100011 11676776654 56899999999999999999999999999
Q ss_pred hhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHH
Q 044012 374 WNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMR 453 (490)
Q Consensus 374 ~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~ 453 (490)
+||+.|++++|||||++|++.||+.||+++++++|+|+.+. . .+++++|.++|+++|+ ++++++||
T Consensus 381 ~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-~-----------~~~~~~l~~~i~~ll~--~~~~~~~r 446 (482)
T 2pq6_A 381 WNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-T-----------NVKREELAKLINEVIA--GDKGKKMK 446 (482)
T ss_dssp HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC-S-----------SCCHHHHHHHHHHHHT--SHHHHHHH
T ss_pred cchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC-C-----------CCCHHHHHHHHHHHHc--CCcHHHHH
Confidence 99999999999999999999999999999943799999997 4 6999999999999998 44445899
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q 044012 454 KKANHLKELAKKAVEEGGSSCNDLKALIEDIRLYK 488 (490)
Q Consensus 454 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 488 (490)
+||+++++++++++.+||++..++++|+++++..+
T Consensus 447 ~~a~~l~~~~~~a~~~gGss~~~l~~~v~~~~~~~ 481 (482)
T 2pq6_A 447 QKAMELKKKAEENTRPGGCSYMNLNKVIKDVLLKQ 481 (482)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999986543
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=9.3e-59 Score=469.55 Aligned_cols=441 Identities=25% Similarity=0.438 Sum_probs=316.8
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCe--EEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQ--VTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGL 78 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~--Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 78 (490)
|.+.++++||+++|+|++||++|+++||+.|++|||+ |||++++.....+.+.... ....+++|+.++. ++
T Consensus 1 m~~~~~~~hvv~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~--~~~~~i~~~~i~~-----gl 73 (456)
T 2c1x_A 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMH--TMQCNIKSYDISD-----GV 73 (456)
T ss_dssp ------CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC---------CTTEEEEECCC-----CC
T ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccc--cCCCceEEEeCCC-----CC
Confidence 6777778999999999999999999999999999765 5778876444333321100 0023788888752 34
Q ss_pred CCCccCCCCCCChhhHhhHHHHHH-hhHHHHHHHhhc--CCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHH
Q 044012 79 PEGCENLMSTSTPETTKKLFPALE-LLRPEIEKLFRE--QNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSH 155 (490)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~--~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 155 (490)
++..+.. . ........+..... .+.+.+.+++++ .++|+||+|.++.|+..+|+.+|||+|.+++++...+..+.
T Consensus 74 p~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~ 151 (456)
T 2c1x_A 74 PEGYVFA-G-RPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHV 151 (456)
T ss_dssp CTTCCCC-C-CTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHH
T ss_pred CCccccc-C-ChHHHHHHHHHHhHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHh
Confidence 4433211 1 11233333333332 233334444433 58999999999999999999999999999999876654433
Q ss_pred hhhhc---CCCCC-CCCCCce-eecCCCCCCcccCCCCCCCccccCC--CchhhHHHHHHHhhhcccEEEEcchhhcChH
Q 044012 156 SLEHH---QPFKN-IVSETQK-FIVPGLPDQVKLSRSQLPDIVKCKS--TGFSAMFDELNNAERKSFGVLMNSFYELEPA 228 (490)
Q Consensus 156 ~~~~~---~~~~~-~~~~~~~-~~~p~l~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 228 (490)
+.... ..... ....... ..+|+++. +..++++..++... ..+..++.+......+++.+++|++++||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~ 228 (456)
T 2c1x_A 152 YIDEIREKIGVSGIQGREDELLNFIPGMSK---VRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDS 228 (456)
T ss_dssp THHHHHHHHCSSCCTTCTTCBCTTSTTCTT---CBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHH
T ss_pred hhHHHHhccCCcccccccccccccCCCCCc---ccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHH
Confidence 22110 00000 0111111 23566653 33444444311111 1233445555556678889999999999998
Q ss_pred HHHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHH
Q 044012 229 YADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKE 308 (490)
Q Consensus 229 ~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~ 308 (490)
++..+++.+ +++++|||+....... ....+.++.+|++..+++++|||||||....+.+++.++++++++
T Consensus 229 ~~~~~~~~~-~~~~~vGpl~~~~~~~---------~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~ 298 (456)
T 2c1x_A 229 LTNDLKSKL-KTYLNIGPFNLITPPP---------VVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEA 298 (456)
T ss_dssp HHHHHHHHS-SCEEECCCHHHHC------------------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCEEEecCcccCcccc---------cccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHh
Confidence 888777765 6899999997642210 011235688999988788999999999998888899999999999
Q ss_pred cCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEe
Q 044012 309 SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMV 388 (490)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l 388 (490)
.+++|||+++.. +... +|++|.++. ++|+++++|+||.++|+|+++++|||||||||+.||+++|||||
T Consensus 299 ~~~~~lw~~~~~-------~~~~-l~~~~~~~~---~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i 367 (456)
T 2c1x_A 299 SRVPFIWSLRDK-------ARVH-LPEGFLEKT---RGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLI 367 (456)
T ss_dssp HTCCEEEECCGG-------GGGG-SCTTHHHHH---TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEE
T ss_pred cCCeEEEEECCc-------chhh-CCHHHHhhc---CCceEEecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEE
Confidence 999999999865 2222 677776554 56899999999999999999999999999999999999999999
Q ss_pred eccCcccccchHHHHHHhh-ccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Q 044012 389 TWPVFAEQFNNEKLVTQVL-KFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAV 467 (490)
Q Consensus 389 ~~P~~~DQ~~na~rv~e~~-G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~ 467 (490)
++|++.||+.||++++ +. |+|+.+... .+++++|.++|+++|+ ++++++||+||+++++.+++++
T Consensus 368 ~~P~~~dQ~~Na~~l~-~~~g~g~~l~~~-----------~~~~~~l~~~i~~ll~--~~~~~~~r~~a~~l~~~~~~a~ 433 (456)
T 2c1x_A 368 CRPFFGDQRLNGRMVE-DVLEIGVRIEGG-----------VFTKSGLMSCFDQILS--QEKGKKLRENLRALRETADRAV 433 (456)
T ss_dssp ECCCSTTHHHHHHHHH-HTSCCEEECGGG-----------SCCHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCChhhHHHHHHHHH-HHhCeEEEecCC-----------CcCHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999995 77 999999765 7999999999999998 4445699999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhhc
Q 044012 468 EEGGSSCNDLKALIEDIRLYK 488 (490)
Q Consensus 468 ~~~g~~~~~~~~~~~~~~~~~ 488 (490)
.+||+|..++++|++++...|
T Consensus 434 ~~gGsS~~~l~~~v~~~~~~~ 454 (456)
T 2c1x_A 434 GPKGSSTENFITLVDLVSKPK 454 (456)
T ss_dssp STTCHHHHHHHHHHHHHTSCC
T ss_pred hcCCcHHHHHHHHHHHHHhcC
Confidence 999999999999999997544
No 5
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=2.8e-58 Score=467.26 Aligned_cols=442 Identities=29% Similarity=0.474 Sum_probs=321.8
Q ss_pred CCCC--CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcch-----hhhhhhhcccccCCCceEEEEeeC
Q 044012 1 MVSE--NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNA-----RRFQNAIDRDSRLGREISLRILRF 71 (490)
Q Consensus 1 m~~~--~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~ 71 (490)
|+|. ++++||+++|+|++||++|+++||+.|++| ||+|||++++... +.+.... ..+.+++|+.+|.
T Consensus 1 ~~~~~~~~~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~----~~~~~i~~~~lp~ 76 (463)
T 2acv_A 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVL----ASQPQIQLIDLPE 76 (463)
T ss_dssp --CHHHHHCEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHH----CSCTTEEEEECCC
T ss_pred CCcccCCCCCEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcc----cCCCCceEEECCC
Confidence 5655 467899999999999999999999999999 9999999998753 2222210 1124799999874
Q ss_pred CCCcCCCCCCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhc---CCCcEEEEcCCCcchHHHHHHhCCCeEEEecccH
Q 044012 72 PSQEAGLPEGCENLMSTSTPETTKKLFPALELLRPEIEKLFRE---QNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGF 148 (490)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 148 (490)
.. ++. .+... ..... +..........+.+++++ .++|+||+|.++.|+..+|+.+|||++.+++++.
T Consensus 77 ~~----~~~-~~~~~---~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~ 146 (463)
T 2acv_A 77 VE----PPP-QELLK---SPEFY--ILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNV 146 (463)
T ss_dssp CC----CCC-GGGGG---SHHHH--HHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCH
T ss_pred CC----CCc-ccccC---CccHH--HHHHHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchH
Confidence 31 221 11111 11222 444445556677777766 6899999999988999999999999999999988
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCc---eeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhc
Q 044012 149 FNNCVSHSLEHHQPFKNIVSETQ---KFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYEL 225 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 225 (490)
..+..+.++.............. +..+|++... +..++++..+... ......+.......+.+..+++|++.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~--~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~nt~~el 223 (463)
T 2acv_A 147 GFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQ--VPSNVLPDACFNK-DGGYIAYYKLAERFRDTKGIIVNTFSDL 223 (463)
T ss_dssp HHHHHHHHGGGSCTTCCCCCSSGGGCEECCTTCSSC--EEGGGSCHHHHCT-TTHHHHHHHHHHHHTTSSEEEESCCHHH
T ss_pred HHHHHHHHHHhhcccCCCCCccccCceeECCCCCCC--CChHHCchhhcCC-chHHHHHHHHHHhcccCCEEEECCHHHH
Confidence 87766655543211011111122 4456776221 2333333321111 1122333344455677888999999999
Q ss_pred ChHHHHHHHhhh--CCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcc-cCCHHHHHHH
Q 044012 226 EPAYADHFRRVT--GKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLT-RFSKEQTSEI 302 (490)
Q Consensus 226 ~~~~~~~~~~~~--~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~~ 302 (490)
+++....+.... ++++++|||+......... ...+..+.++.+|++..+++++|||||||+. ..+.+++.++
T Consensus 224 e~~~~~~l~~~~~p~~~v~~vGpl~~~~~~~~~-----~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~ 298 (463)
T 2acv_A 224 EQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNP-----KLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREI 298 (463)
T ss_dssp HHHHHHHHHHHCTTSCCEEECCCCCCSSCCCBT-----TBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHH
T ss_pred hHHHHHHHHhccccCCcEEEeCCCccccccccc-----ccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHH
Confidence 988777666544 5789999999764310000 0001235678999999888899999999999 7788889999
Q ss_pred HHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHH
Q 044012 303 AAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVS 382 (490)
Q Consensus 303 ~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~ 382 (490)
+++|++.+++|||+++.. . ..+|++|.++... ++|+++++|+||.++|+|+++++|||||||||+.|+++
T Consensus 299 ~~~l~~~~~~~l~~~~~~---~------~~l~~~~~~~~~~-~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~ 368 (463)
T 2acv_A 299 ALGLKHSGVRFLWSNSAE---K------KVFPEGFLEWMEL-EGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMW 368 (463)
T ss_dssp HHHHHHHTCEEEEECCCC---G------GGSCTTHHHHHHH-HCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEECCC---c------ccCChhHHHhhcc-CCCEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHH
Confidence 999999999999999853 1 0166666655400 23788889999999999999999999999999999999
Q ss_pred hCCcEeeccCcccccchHHHHHHhhccceee-ccccccccccCCCC--ccchhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044012 383 AGVPMVTWPVFAEQFNNEKLVTQVLKFGLPV-GNEIWKIWATQDSP--VINRGNIKNAICVVMDNDDQEAVKMRKKANHL 459 (490)
Q Consensus 383 ~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l-~~~~~~~~~~~~~~--~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l 459 (490)
+|||||++|++.||+.||+++++++|+|+.+ ... .+. .+++++|.++|+++|+++ ++||+||+++
T Consensus 369 ~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~--------~~~~~~~~~~~l~~ai~~ll~~~----~~~r~~a~~l 436 (463)
T 2acv_A 369 FGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDY--------RKGSDVVAAEEIEKGLKDLMDKD----SIVHKKVQEM 436 (463)
T ss_dssp TTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSC--------CTTCCCCCHHHHHHHHHHHTCTT----CTHHHHHHHH
T ss_pred cCCCeeeccchhhhHHHHHHHHHHcCeEEEEeccc--------CCCCccccHHHHHHHHHHHHhcc----HHHHHHHHHH
Confidence 9999999999999999999942699999999 311 002 589999999999999732 4899999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 044012 460 KELAKKAVEEGGSSCNDLKALIEDIRL 486 (490)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~~~~~ 486 (490)
++++++++.+||+|..++++|++++++
T Consensus 437 ~~~~~~a~~~gGss~~~l~~~v~~~~~ 463 (463)
T 2acv_A 437 KEMSRNAVVDGGSSLISVGKLIDDITG 463 (463)
T ss_dssp HHHHHHHTSTTSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhcC
Confidence 999999999999999999999999853
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=2.7e-45 Score=370.08 Aligned_cols=399 Identities=18% Similarity=0.235 Sum_probs=271.4
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
++||||+|++++++||++|+++||++|++|||+|+|++++.+.+.++.. +++|+.++.. ++.....
T Consensus 10 m~~~~Il~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~~---------g~~~~~~~~~-----~~~~~~~ 75 (424)
T 2iya_A 10 VTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAA---------GATPVVYDSI-----LPKESNP 75 (424)
T ss_dssp -CCCEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH---------TCEEEECCCC-----SCCTTCT
T ss_pred cccceEEEEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHhC---------CCEEEecCcc-----ccccccc
Confidence 5679999999999999999999999999999999999999988877776 6788777532 2221111
Q ss_pred CCCCC-C-hhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCC
Q 044012 85 LMSTS-T-PETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQP 162 (490)
Q Consensus 85 ~~~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (490)
..... . ...+..+..........+.+++++.+||+||+|.+..|+..+|+.+|||+|.+++.+...............
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 155 (424)
T 2iya_A 76 EESWPEDQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQD 155 (424)
T ss_dssp TCCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSC
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEecccccccccccccccccc
Confidence 00001 1 122222333344556778888888999999999988899999999999999998765311100000000000
Q ss_pred CCCCCCCCceeecC-CCCCCcccCCCCCCCccccCCCchhhHHHHHHH----------hhhcccEEEEcchhhcChHHHH
Q 044012 163 FKNIVSETQKFIVP-GLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNN----------AERKSFGVLMNSFYELEPAYAD 231 (490)
Q Consensus 163 ~~~~~~~~~~~~~p-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~s~~~l~~~~~~ 231 (490)
.......+...| +......... ..+.+ ..+......... ....++.++.++..+++++
T Consensus 156 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~--- 224 (424)
T 2iya_A 156 --PTADRGEEAAAPAGTGDAEEGAE-AEDGL-----VRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIK--- 224 (424)
T ss_dssp --CCC----------------------HHHH-----HHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTT---
T ss_pred --cccccccccccccccccchhhhc-cchhH-----HHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCC---
Confidence 000000000000 0000000000 00000 000011111111 1114566788888877753
Q ss_pred HHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCC
Q 044012 232 HFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGH 311 (490)
Q Consensus 232 ~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~ 311 (490)
...+++++++|||+... ..+..+|++..+++++|||++||......+.+..+++++++.++
T Consensus 225 --~~~~~~~~~~vGp~~~~-----------------~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~ 285 (424)
T 2iya_A 225 --GDTVGDNYTFVGPTYGD-----------------RSHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDW 285 (424)
T ss_dssp --GGGCCTTEEECCCCCCC-----------------CGGGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSS
T ss_pred --ccCCCCCEEEeCCCCCC-----------------cccCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCc
Confidence 24577899999997542 11234677755567899999999986667888899999998899
Q ss_pred ceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeecc
Q 044012 312 SFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWP 391 (490)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P 391 (490)
+++|.+|.. .+..++.. + ++|+++.+|+||.++|+++++ ||||||+||+.||+++|||+|++|
T Consensus 286 ~~~~~~g~~---~~~~~~~~-~-----------~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p 348 (424)
T 2iya_A 286 HVVLSVGRF---VDPADLGE-V-----------PPNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVP 348 (424)
T ss_dssp EEEEECCTT---SCGGGGCS-C-----------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECC
T ss_pred EEEEEECCc---CChHHhcc-C-----------CCCeEEecCCCHHHHHhhCCE--EEECCchhHHHHHHHcCCCEEEec
Confidence 999998865 21111111 1 569999999999999999998 999999999999999999999999
Q ss_pred CcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044012 392 VFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGG 471 (490)
Q Consensus 392 ~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g 471 (490)
...||+.||+++ ++.|+|+.+... .+++++|.++|+++|+ + +++++++++++++++ +.+|
T Consensus 349 ~~~dQ~~na~~l-~~~g~g~~~~~~-----------~~~~~~l~~~i~~ll~-~----~~~~~~~~~~~~~~~---~~~~ 408 (424)
T 2iya_A 349 QIAEQTMNAERI-VELGLGRHIPRD-----------QVTAEKLREAVLAVAS-D----PGVAERLAAVRQEIR---EAGG 408 (424)
T ss_dssp CSHHHHHHHHHH-HHTTSEEECCGG-----------GCCHHHHHHHHHHHHH-C----HHHHHHHHHHHHHHH---TSCH
T ss_pred CccchHHHHHHH-HHCCCEEEcCcC-----------CCCHHHHHHHHHHHHc-C----HHHHHHHHHHHHHHH---hcCc
Confidence 999999999999 599999999876 7899999999999998 5 689999999999988 3443
Q ss_pred CcHHHHHHHHHHHHh
Q 044012 472 SSCNDLKALIEDIRL 486 (490)
Q Consensus 472 ~~~~~~~~~~~~~~~ 486 (490)
. ..+.+.++++.+
T Consensus 409 ~--~~~~~~i~~~~~ 421 (424)
T 2iya_A 409 A--RAAADILEGILA 421 (424)
T ss_dssp H--HHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHh
Confidence 3 344555555543
No 7
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=3.7e-45 Score=366.23 Aligned_cols=368 Identities=15% Similarity=0.157 Sum_probs=236.5
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcC--CCCCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEA--GLPEGC 82 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~ 82 (490)
.+.|||+|+++|+.||++|+++||++|++|||+|||++++.+....+. ++.++.+....... ..+...
T Consensus 20 ~~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 89 (400)
T 4amg_A 20 FQSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATGGDIRAVAEA----------GLCAVDVSPGVNYAKLFVPDDT 89 (400)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSSTHHHHTT----------TCEEEESSTTCCSHHHHSCCC-
T ss_pred CCCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeCcchhhHHhc----------CCeeEecCCchhHhhhcccccc
Confidence 467999999999999999999999999999999999999887765442 45566553211100 001110
Q ss_pred cCCCCCC----ChhhHhh-HHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhh
Q 044012 83 ENLMSTS----TPETTKK-LFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSL 157 (490)
Q Consensus 83 ~~~~~~~----~~~~~~~-~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 157 (490)
....... ....+.. +..........+.+.+++++||+||+|.+++++..+|+.+|||++.+...+..........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~ 169 (400)
T 4amg_A 90 DVTDPMHSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLGAL 169 (400)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccccchhhH
Confidence 0000000 0111111 2222334566777888889999999999999999999999999998754432111000000
Q ss_pred hhcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHh--
Q 044012 158 EHHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRR-- 235 (490)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~-- 235 (490)
.. + .+.....+................ ++.......
T Consensus 170 ~~---------------------------~-----------~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 207 (400)
T 4amg_A 170 IR---------------------------R-----------AMSKDYERHGVTGEPTGSVRLTTT----PPSVEALLPED 207 (400)
T ss_dssp HH---------------------------H-----------HTHHHHHHTTCCCCCSCEEEEECC----CHHHHHTSCGG
T ss_pred HH---------------------------H-----------HHHHHHHHhCCCcccccchhhccc----CchhhccCccc
Confidence 00 0 000000000000001111111110 111110000
Q ss_pred hhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCC--HHHHHHHHHHHHHcCCce
Q 044012 236 VTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFS--KEQTSEIAAALKESGHSF 313 (490)
Q Consensus 236 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~--~~~~~~~~~al~~~~~~~ 313 (490)
...+....+++.... ....+.+|++..+.+++|||||||+.... .+.+..+++++++.+.++
T Consensus 208 ~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~ 271 (400)
T 4amg_A 208 RRSPGAWPMRYVPYN----------------GGAVLPDWLPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEF 271 (400)
T ss_dssp GCCTTCEECCCCCCC----------------CCEECCTTCSCCTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEE
T ss_pred ccCCcccCccccccc----------------ccccCcccccccCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceE
Confidence 011222222221111 23556678888888999999999987633 456888999999999999
Q ss_pred EEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCc
Q 044012 314 IWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVF 393 (490)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~ 393 (490)
||..++. ... .... + ++|+++.+|+||.++|+|+++ ||||||+||+.||+++|||+|++|++
T Consensus 272 v~~~~~~---~~~-~~~~-~-----------~~~v~~~~~~p~~~lL~~~~~--~v~h~G~~s~~Eal~~GvP~v~~P~~ 333 (400)
T 4amg_A 272 VLTLGGG---DLA-LLGE-L-----------PANVRVVEWIPLGALLETCDA--IIHHGGSGTLLTALAAGVPQCVIPHG 333 (400)
T ss_dssp EEECCTT---CCC-CCCC-C-----------CTTEEEECCCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC-
T ss_pred EEEecCc---ccc-cccc-C-----------CCCEEEEeecCHHHHhhhhhh--eeccCCccHHHHHHHhCCCEEEecCc
Confidence 9998766 210 1100 1 679999999999999999998 99999999999999999999999999
Q ss_pred ccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 044012 394 AEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSS 473 (490)
Q Consensus 394 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 473 (490)
.||+.||+++ ++.|+|+.++.. +++++ +|+++|+ | ++||++|++++++++ +..+.
T Consensus 334 ~dQ~~na~~v-~~~G~g~~l~~~-----------~~~~~----al~~lL~-d----~~~r~~a~~l~~~~~---~~~~~- 388 (400)
T 4amg_A 334 SYQDTNRDVL-TGLGIGFDAEAG-----------SLGAE----QCRRLLD-D----AGLREAALRVRQEMS---EMPPP- 388 (400)
T ss_dssp --CHHHHHHH-HHHTSEEECCTT-----------TCSHH----HHHHHHH-C----HHHHHHHHHHHHHHH---TSCCH-
T ss_pred ccHHHHHHHH-HHCCCEEEcCCC-----------CchHH----HHHHHHc-C----HHHHHHHHHHHHHHH---cCCCH-
Confidence 9999999999 599999999776 66654 6778898 6 699999999999998 45544
Q ss_pred HHHHHHHHHHH
Q 044012 474 CNDLKALIEDI 484 (490)
Q Consensus 474 ~~~~~~~~~~~ 484 (490)
..+.+.+++|
T Consensus 389 -~~~a~~le~l 398 (400)
T 4amg_A 389 -AETAAXLVAL 398 (400)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHh
Confidence 4456677765
No 8
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=100.00 E-value=3.4e-41 Score=339.16 Aligned_cols=364 Identities=14% Similarity=0.119 Sum_probs=256.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
.+||||+|++.++.||++|+++||++|++|||+|+|++++.+.+.++.. ++.+..++.+... . .....
T Consensus 18 ~~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~~---------G~~~~~~~~~~~~--~-~~~~~ 85 (415)
T 3rsc_A 18 RHMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAA---------GATVVPYQSEIID--A-DAAEV 85 (415)
T ss_dssp -CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHT---------TCEEEECCCSTTT--C-CHHHH
T ss_pred ccCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHhc---------CCEEEeccccccc--c-ccchh
Confidence 5689999999999999999999999999999999999999888888776 7888887632111 0 00000
Q ss_pred CCCCCChhhHhh-HHHHHHhhHHHHHHHhhcCCCcEEEEc-CCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCC
Q 044012 85 LMSTSTPETTKK-LFPALELLRPEIEKLFREQNPNCIVSD-NLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQP 162 (490)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~pD~VI~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (490)
.........+.. +..........+.+.+++++||+||+| ...+++..+|+.+|||+|.+.+......
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~----------- 154 (415)
T 3rsc_A 86 FGSDDLGVRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNE----------- 154 (415)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCS-----------
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccC-----------
Confidence 000011122222 333334456778888899999999999 6777899999999999998864431100
Q ss_pred CCCCCCCCce--eecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHh----------hhcc-cEEEEcchhhcChHH
Q 044012 163 FKNIVSETQK--FIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNA----------ERKS-FGVLMNSFYELEPAY 229 (490)
Q Consensus 163 ~~~~~~~~~~--~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~s~~~l~~~~ 229 (490)
...+ ...+... ...+.. .. .+...+..+... .... +..+.... +.
T Consensus 155 ------~~~~~~~~~~~~~-------~~~p~~-~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~-----~~ 212 (415)
T 3rsc_A 155 ------HYSFSQDMVTLAG-------TIDPLD-LP---VFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVP-----KA 212 (415)
T ss_dssp ------SCCHHHHHHHHHT-------CCCGGG-CH---HHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSC-----TT
T ss_pred ------ccccccccccccc-------cCChhh-HH---HHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcC-----cc
Confidence 0000 0000000 000000 00 001111111110 1111 33444332 23
Q ss_pred HHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc
Q 044012 230 ADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES 309 (490)
Q Consensus 230 ~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 309 (490)
+......++.++.++||+... ..+..+|....+++++|||++||......+.+..+++++.+.
T Consensus 213 ~~~~~~~~~~~~~~vGp~~~~-----------------~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~ 275 (415)
T 3rsc_A 213 FQIAGDTFDDRFVFVGPCFDD-----------------RRFLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQ 275 (415)
T ss_dssp TSTTGGGCCTTEEECCCCCCC-----------------CGGGCCCCCCSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTS
T ss_pred cCCCcccCCCceEEeCCCCCC-----------------cccCcCccccCCCCCEEEEECCCCCCChHHHHHHHHHHHhcC
Confidence 333445567889999987543 223445665555788999999999877777888999999998
Q ss_pred CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEee
Q 044012 310 GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVT 389 (490)
Q Consensus 310 ~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 389 (490)
+.+++|.+|.. .+...+.. + ++|+++.+|+|+.++|++|++ +|||||+||+.||+++|+|+|+
T Consensus 276 ~~~~v~~~g~~---~~~~~l~~-~-----------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~ 338 (415)
T 3rsc_A 276 PWHVVMTLGGQ---VDPAALGD-L-----------PPNVEAHRWVPHVKVLEQATV--CVTHGGMGTLMEALYWGRPLVV 338 (415)
T ss_dssp SCEEEEECTTT---SCGGGGCC-C-----------CTTEEEESCCCHHHHHHHEEE--EEESCCHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEeCCC---CChHHhcC-C-----------CCcEEEEecCCHHHHHhhCCE--EEECCcHHHHHHHHHhCCCEEE
Confidence 99999998865 22112211 1 669999999999999999999 9999999999999999999999
Q ss_pred ccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 390 WPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 390 ~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
+|...||+.||.++ ++.|+|+.+... ++++++|.++|+++|+ + ++++++++++++++.
T Consensus 339 ~p~~~~q~~~a~~l-~~~g~g~~~~~~-----------~~~~~~l~~~i~~ll~-~----~~~~~~~~~~~~~~~ 396 (415)
T 3rsc_A 339 VPQSFDVQPMARRV-DQLGLGAVLPGE-----------KADGDTLLAAVGAVAA-D----PALLARVEAMRGHVR 396 (415)
T ss_dssp CCCSGGGHHHHHHH-HHHTCEEECCGG-----------GCCHHHHHHHHHHHHT-C----HHHHHHHHHHHHHHH
T ss_pred eCCcchHHHHHHHH-HHcCCEEEcccC-----------CCCHHHHHHHHHHHHc-C----HHHHHHHHHHHHHHH
Confidence 99999999999999 599999999876 7899999999999999 5 699999999999987
No 9
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=100.00 E-value=2.8e-40 Score=330.86 Aligned_cols=382 Identities=17% Similarity=0.172 Sum_probs=259.1
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
|+|+||+|++.++.||++|++.||++|++|||+|+|++++.+.+.++.. ++++..++.+.... . ....
T Consensus 2 m~M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~---------G~~~~~~~~~~~~~--~-~~~~ 69 (402)
T 3ia7_A 2 MRQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAA---------GAEVVLYKSEFDTF--H-VPEV 69 (402)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHT---------TCEEEECCCGGGTS--S-SSSS
T ss_pred CCCCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHc---------CCEEEecccccccc--c-cccc
Confidence 3467999999999999999999999999999999999998888877766 78888876322110 0 0000
Q ss_pred CCCCCChhhHhh-HHHHHHhhHHHHHHHhhcCCCcEEEEc-CCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCC
Q 044012 85 LMSTSTPETTKK-LFPALELLRPEIEKLFREQNPNCIVSD-NLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQP 162 (490)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~pD~VI~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (490)
.........+.. +..........+.+.+++++||+||+| ...+++..+|+.+|||+|.+.+....... +....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~-~~~~~---- 144 (402)
T 3ia7_A 70 VKQEDAETQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEH-YSLFK---- 144 (402)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTT-BCHHH----
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCcc-ccccc----
Confidence 010111122222 233333456778888889999999999 67778999999999999988644221000 00000
Q ss_pred CCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHh----------hhcc-cEEEEcchhhcChHHHH
Q 044012 163 FKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNA----------ERKS-FGVLMNSFYELEPAYAD 231 (490)
Q Consensus 163 ~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~s~~~l~~~~~~ 231 (490)
...+. ..... +.. .. .+.......... .... +..+.... +.+.
T Consensus 145 ------~~~~~-~~~~~----------~~~-~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~-----~~~~ 198 (402)
T 3ia7_A 145 ------ELWKS-NGQRH----------PAD-VE---AVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLP-----KSFQ 198 (402)
T ss_dssp ------HHHHH-HTCCC----------GGG-SH---HHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSC-----GGGS
T ss_pred ------ccccc-ccccC----------hhh-HH---HHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcC-----hHhC
Confidence 00000 00000 000 00 000011111100 0111 33333332 2233
Q ss_pred HHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCC
Q 044012 232 HFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGH 311 (490)
Q Consensus 232 ~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~ 311 (490)
.....++.++.++||.... ......|....+++++|||++||......+.+..+++++.+.+.
T Consensus 199 ~~~~~~~~~~~~vGp~~~~-----------------~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~ 261 (402)
T 3ia7_A 199 PFAETFDERFAFVGPTLTG-----------------RDGQPGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPW 261 (402)
T ss_dssp TTGGGCCTTEEECCCCCCC---------------------CCCCCSSTTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSC
T ss_pred CccccCCCCeEEeCCCCCC-----------------cccCCCCcccCCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCc
Confidence 3445567889999987543 12334566555578899999999987777788899999999899
Q ss_pred ceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeecc
Q 044012 312 SFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWP 391 (490)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P 391 (490)
+++|.+|.. .+...+.. .++|+++.+|+|+.++|++|++ +|||||+||+.||+++|+|+|++|
T Consensus 262 ~~~~~~g~~---~~~~~~~~------------~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p 324 (402)
T 3ia7_A 262 HVVMAIGGF---LDPAVLGP------------LPPNVEAHQWIPFHSVLAHARA--CLTHGTTGAVLEAFAAGVPLVLVP 324 (402)
T ss_dssp EEEEECCTT---SCGGGGCS------------CCTTEEEESCCCHHHHHTTEEE--EEECCCHHHHHHHHHTTCCEEECG
T ss_pred EEEEEeCCc---CChhhhCC------------CCCcEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeC
Confidence 999998865 22112111 1669999999999999999999 999999999999999999999999
Q ss_pred C-cccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcC
Q 044012 392 V-FAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEG 470 (490)
Q Consensus 392 ~-~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~ 470 (490)
. ..||..||.++ ++.|+|+.+... +++++.|.++|+++|+ + ++++++++++++++. ..
T Consensus 325 ~~~~~q~~~a~~~-~~~g~g~~~~~~-----------~~~~~~l~~~~~~ll~-~----~~~~~~~~~~~~~~~----~~ 383 (402)
T 3ia7_A 325 HFATEAAPSAERV-IELGLGSVLRPD-----------QLEPASIREAVERLAA-D----SAVRERVRRMQRDIL----SS 383 (402)
T ss_dssp GGCGGGHHHHHHH-HHTTSEEECCGG-----------GCSHHHHHHHHHHHHH-C----HHHHHHHHHHHHHHH----TS
T ss_pred CCcccHHHHHHHH-HHcCCEEEccCC-----------CCCHHHHHHHHHHHHc-C----HHHHHHHHHHHHHHh----hC
Confidence 9 99999999999 599999999876 7899999999999999 5 689999999999987 33
Q ss_pred CCcHHHHHHHHHHHH
Q 044012 471 GSSCNDLKALIEDIR 485 (490)
Q Consensus 471 g~~~~~~~~~~~~~~ 485 (490)
+++. .+.+.++++.
T Consensus 384 ~~~~-~~~~~i~~~~ 397 (402)
T 3ia7_A 384 GGPA-RAADEVEAYL 397 (402)
T ss_dssp CHHH-HHHHHHHHHH
T ss_pred ChHH-HHHHHHHHHH
Confidence 4433 3444444443
No 10
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=1.3e-41 Score=342.02 Aligned_cols=379 Identities=15% Similarity=0.164 Sum_probs=250.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
|||+|++.++.||++|+++||++|++|||+|+|++++.+.+.+... +++|+.++.... ........
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~---------g~~~~~i~~~~~-----~~~~~~~~ 66 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEV---------GVPHVPVGPSAR-----APIQRAKP 66 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHT---------TCCEEECCC------------CCSC
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHc---------CCeeeeCCCCHH-----HHhhcccc
Confidence 6999999999999999999999999999999999999877777665 788888864321 00011110
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhh-cCCCcEEEEcC-CCcc--hHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCC
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFR-EQNPNCIVSDN-LFPW--TVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPF 163 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~pD~VI~D~-~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 163 (490)
.....+..+... .....+.++++ ..+||+||+|. +..| +..+|+.+|||+|.+++.+.... .
T Consensus 67 -~~~~~~~~~~~~--~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~-----------~ 132 (415)
T 1iir_A 67 -LTAEDVRRFTTE--AIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVP-----------S 132 (415)
T ss_dssp -CCHHHHHHHHHH--HHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSC-----------C
T ss_pred -cchHHHHHHHHH--HHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCC-----------C
Confidence 011111111111 11222333333 57999999998 5668 89999999999999877653210 0
Q ss_pred CCCCCCCceeecCCCCCCcccCCCCCCCccccC-CC-c----hhhHHHHHHHh------------hhcccEEEEcchhhc
Q 044012 164 KNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCK-ST-G----FSAMFDELNNA------------ERKSFGVLMNSFYEL 225 (490)
Q Consensus 164 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~-~~-~----~~~~~~~~~~~------------~~~~~~~~~~s~~~l 225 (490)
...|.... + +.+..+.....+... .. . +.......... .... .++.++.+.+
T Consensus 133 ~~~p~~~~-----~----~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~l 202 (415)
T 1iir_A 133 PYYPPPPL-----G----EPSTQDTIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTD-HPWVAADPVL 202 (415)
T ss_dssp SSSCCCC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCS-SCEECSCTTT
T ss_pred cccCCccC-----C----ccccchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCccccccCCC-CEEEeeChhh
Confidence 00110000 0 000000000000000 00 0 00001111110 1112 4567777766
Q ss_pred ChHHHHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHH
Q 044012 226 EPAYADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAA 305 (490)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a 305 (490)
++. .+..+ ++++|||+..... +..+.++.+|++.. +++|||++||.. ...+.+..++++
T Consensus 203 ~~~----~~~~~--~~~~vG~~~~~~~------------~~~~~~~~~~l~~~--~~~v~v~~Gs~~-~~~~~~~~~~~a 261 (415)
T 1iir_A 203 APL----QPTDL--DAVQTGAWILPDE------------RPLSPELAAFLDAG--PPPVYLGFGSLG-APADAVRVAIDA 261 (415)
T ss_dssp SCC----CCCSS--CCEECCCCCCCCC------------CCCCHHHHHHHHTS--SCCEEEECC----CCHHHHHHHHHH
T ss_pred cCC----CcccC--CeEeeCCCccCcc------------cCCCHHHHHHHhhC--CCeEEEeCCCCC-CcHHHHHHHHHH
Confidence 641 01112 7899999865421 12357788999764 468999999987 567778889999
Q ss_pred HHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCC
Q 044012 306 LKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGV 385 (490)
Q Consensus 306 l~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~Gv 385 (490)
+++.+.++||++|.. .. +... + ++|+++.+|+||.++|+++++ ||||||+||+.||+++||
T Consensus 262 l~~~~~~~v~~~g~~---~~--~~~~-~-----------~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~ 322 (415)
T 1iir_A 262 IRAHGRRVILSRGWA---DL--VLPD-D-----------GADCFAIGEVNHQVLFGRVAA--VIHHGGAGTTHVAARAGA 322 (415)
T ss_dssp HHHTTCCEEECTTCT---TC--CCSS-C-----------GGGEEECSSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTC
T ss_pred HHHCCCeEEEEeCCC---cc--cccC-C-----------CCCEEEeCcCChHHHHhhCCE--EEeCCChhHHHHHHHcCC
Confidence 999999999998865 21 0000 1 458999999999999999888 999999999999999999
Q ss_pred cEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Q 044012 386 PMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKK 465 (490)
Q Consensus 386 P~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~ 465 (490)
|+|++|...||..||+++ ++.|+|+.++.. ++++++|.++|+++ + + ++|++++++++++++
T Consensus 323 P~i~~p~~~dQ~~na~~l-~~~g~g~~~~~~-----------~~~~~~l~~~i~~l-~-~----~~~~~~~~~~~~~~~- 383 (415)
T 1iir_A 323 PQILLPQMADQPYYAGRV-AELGVGVAHDGP-----------IPTFDSLSAALATA-L-T----PETHARATAVAGTIR- 383 (415)
T ss_dssp CEEECCCSTTHHHHHHHH-HHHTSEEECSSS-----------SCCHHHHHHHHHHH-T-S----HHHHHHHHHHHHHSC-
T ss_pred CEEECCCCCccHHHHHHH-HHCCCcccCCcC-----------CCCHHHHHHHHHHH-c-C----HHHHHHHHHHHHHHh-
Confidence 999999999999999999 699999999876 78999999999999 7 6 699999999999876
Q ss_pred HHhcCCCcHHHHHHHHHHHHhh
Q 044012 466 AVEEGGSSCNDLKALIEDIRLY 487 (490)
Q Consensus 466 ~~~~~g~~~~~~~~~~~~~~~~ 487 (490)
..+| ...+.+.++++.+.
T Consensus 384 --~~~~--~~~~~~~i~~~~~~ 401 (415)
T 1iir_A 384 --TDGA--AVAARLLLDAVSRE 401 (415)
T ss_dssp --SCHH--HHHHHHHHHHHHTC
T ss_pred --hcCh--HHHHHHHHHHHHhc
Confidence 2222 34456666665443
No 11
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=100.00 E-value=1.5e-40 Score=332.76 Aligned_cols=367 Identities=15% Similarity=0.133 Sum_probs=251.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
|||+|++.++.||++|+++||++|++|||+|+|++++.+.+.++.. ++.|..++...... .....
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~~~v~~~---------g~~~~~l~~~~~~~------~~~~~ 65 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEV---------GVPMVPVGRAVRAG------AREPG 65 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHT---------TCCEEECSSCSSGG------GSCTT
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHc---------CCceeecCCCHHHH------hcccc
Confidence 7999999999999999999999999999999999999988888876 78888886332110 00000
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcch---HHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCCC
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWT---VSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPFK 164 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~---~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (490)
.........+..........+.+.++ +||+||+|.....+ ..+|+.+|||++.+..++.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~------------ 131 (404)
T 3h4t_A 66 ELPPGAAEVVTEVVAEWFDKVPAAIE--GCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPS------------ 131 (404)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHHHHT--TCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGG------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCC------------
Confidence 01112222233333344445555443 79999999765543 78999999999988777542100
Q ss_pred CCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhh-----------hcccEEEEcchhhcChHHHHHH
Q 044012 165 NIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAE-----------RKSFGVLMNSFYELEPAYADHF 233 (490)
Q Consensus 165 ~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~~l~~~~~~~~ 233 (490)
+.+.. .+ ...... .. ..+.+..+...... ......+.+..+.+.+.
T Consensus 132 -----------~~~~~---~~-~~~~~~-~~--~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~l~~~~~~l~p~----- 188 (404)
T 3h4t_A 132 -----------EQSQA---ER-DMYNQG-AD--RLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPL----- 188 (404)
T ss_dssp -----------GSCHH---HH-HHHHHH-HH--HHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCC-----
T ss_pred -----------hhHHH---HH-HHHHHH-HH--HHhHHHHHHHHHHcCCCCCcchhhccccCCeEEeeCcceeCC-----
Confidence 00000 00 000000 00 00000000000000 00111233443334321
Q ss_pred HhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCce
Q 044012 234 RRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSF 313 (490)
Q Consensus 234 ~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 313 (490)
+++++++.++|++..+.. ..+++++.+|++. .+++|||++||+.. ..+.+..+++++++.++++
T Consensus 189 -~~~~~~~~~~G~~~~~~~------------~~~~~~l~~~l~~--~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~v 252 (404)
T 3h4t_A 189 -RPTDLGTVQTGAWILPDQ------------RPLSAELEGFLRA--GSPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRV 252 (404)
T ss_dssp -CTTCCSCCBCCCCCCCCC------------CCCCHHHHHHHHT--SSCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCE
T ss_pred -CCCCCCeEEeCccccCCC------------CCCCHHHHHHHhc--CCCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEE
Confidence 245678899998755421 1246788889874 45789999999987 6678889999999999999
Q ss_pred EEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCc
Q 044012 314 IWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVF 393 (490)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~ 393 (490)
||+++.. . ... ... ++|+++.+|+||.++|+++++ ||||||+||+.|++++|||+|++|+.
T Consensus 253 v~~~g~~---~----~~~-~~~---------~~~v~~~~~~~~~~ll~~~d~--~v~~gG~~t~~Eal~~GvP~v~~p~~ 313 (404)
T 3h4t_A 253 VLSSGWA---G----LGR-IDE---------GDDCLVVGEVNHQVLFGRVAA--VVHHGGAGTTTAVTRAGAPQVVVPQK 313 (404)
T ss_dssp EEECTTT---T----CCC-SSC---------CTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCS
T ss_pred EEEeCCc---c----ccc-ccC---------CCCEEEecCCCHHHHHhhCcE--EEECCcHHHHHHHHHcCCCEEEcCCc
Confidence 9998865 2 110 111 669999999999999999998 99999999999999999999999999
Q ss_pred ccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 044012 394 AEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSS 473 (490)
Q Consensus 394 ~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 473 (490)
.||+.||.++ ++.|+|+.+... ++++++|.++|+++|+ + +|+++++++++.+. . . +
T Consensus 314 ~dQ~~na~~~-~~~G~g~~l~~~-----------~~~~~~l~~ai~~ll~-~-----~~~~~~~~~~~~~~---~--~-~ 369 (404)
T 3h4t_A 314 ADQPYYAGRV-ADLGVGVAHDGP-----------TPTVESLSAALATALT-P-----GIRARAAAVAGTIR---T--D-G 369 (404)
T ss_dssp TTHHHHHHHH-HHHTSEEECSSS-----------SCCHHHHHHHHHHHTS-H-----HHHHHHHHHHTTCC---C--C-H
T ss_pred ccHHHHHHHH-HHCCCEeccCcC-----------CCCHHHHHHHHHHHhC-H-----HHHHHHHHHHHHHh---h--h-H
Confidence 9999999999 699999999876 7899999999999997 4 89999999999887 3 2 2
Q ss_pred HHHHHHHHHHHH
Q 044012 474 CNDLKALIEDIR 485 (490)
Q Consensus 474 ~~~~~~~~~~~~ 485 (490)
...+.+.++++.
T Consensus 370 ~~~~~~~i~~~~ 381 (404)
T 3h4t_A 370 TTVAAKLLLEAI 381 (404)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344445555443
No 12
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=5.8e-41 Score=337.49 Aligned_cols=376 Identities=15% Similarity=0.131 Sum_probs=252.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
|||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+... +++|+.++..... .... . ...
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~---------g~~~~~~~~~~~~-~~~~-~--~~~ 67 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEV---------GVPHVPVGLPQHM-MLQE-G--MPP 67 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH---------TCCEEECSCCGGG-CCCT-T--SCC
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHc---------CCeeeecCCCHHH-HHhh-c--ccc
Confidence 6999999999999999999999999999999999998887777776 7888887643111 1111 0 000
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhh--cCCCcEEEEcC-CCcc--hHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCC
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFR--EQNPNCIVSDN-LFPW--TVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQP 162 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~pD~VI~D~-~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (490)
.....+..+.. .....+.+.++ ..+||+||+|. +.++ +..+|+.+|||+|.+.+.+....
T Consensus 68 -~~~~~~~~~~~---~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~----------- 132 (416)
T 1rrv_A 68 -PPPEEEQRLAA---MTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLA----------- 132 (416)
T ss_dssp -CCHHHHHHHHH---HHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSC-----------
T ss_pred -chhHHHHHHHH---HHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCC-----------
Confidence 00111111111 11122333333 56899999997 3456 88999999999998876642210
Q ss_pred CCCCCCCCceeecCCCCCCcccCCCCCCCccccC-CC-----chhhHHHHHH------------HhhhcccEEEEcchhh
Q 044012 163 FKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCK-ST-----GFSAMFDELN------------NAERKSFGVLMNSFYE 224 (490)
Q Consensus 163 ~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~-~~-----~~~~~~~~~~------------~~~~~~~~~~~~s~~~ 224 (490)
....+ |.+. +.+....+...+... .. .+......+. +..... .+++++.++
T Consensus 133 ~~~~p--------~~~~--~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~ 201 (416)
T 1rrv_A 133 SPHLP--------PAYD--EPTTPGVTDIRVLWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGE-RPLLAADPV 201 (416)
T ss_dssp CSSSC--------CCBC--SCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCS-SCEECSCTT
T ss_pred CcccC--------CCCC--CCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCchhhhccCC-CeEEccCcc
Confidence 00011 1000 000000000000000 00 0000011111 111122 467777777
Q ss_pred cChHHHHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCccc-CCHHHHHHHH
Q 044012 225 LEPAYADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTR-FSKEQTSEIA 303 (490)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~-~~~~~~~~~~ 303 (490)
++++ ...+ +++++||+..... +..+.++.+|++.. +++|||++||... ...+.+..++
T Consensus 202 l~~~-----~~~~--~~~~vG~~~~~~~------------~~~~~~~~~~l~~~--~~~v~v~~Gs~~~~~~~~~~~~~~ 260 (416)
T 1rrv_A 202 LAPL-----QPDV--DAVQTGAWLLSDE------------RPLPPELEAFLAAG--SPPVHIGFGSSSGRGIADAAKVAV 260 (416)
T ss_dssp TSCC-----CSSC--CCEECCCCCCCCC------------CCCCHHHHHHHHSS--SCCEEECCTTCCSHHHHHHHHHHH
T ss_pred ccCC-----CCCC--CeeeECCCccCcc------------CCCCHHHHHHHhcC--CCeEEEecCCCCccChHHHHHHHH
Confidence 7642 1112 7899999875421 11356788898764 4689999999864 4556788899
Q ss_pred HHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHh
Q 044012 304 AALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSA 383 (490)
Q Consensus 304 ~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~ 383 (490)
+++++.++++||++|.. .. +... + ++|+.+.+|+||.++|+++++ ||||||+||++||+++
T Consensus 261 ~al~~~~~~~v~~~g~~---~~--~~~~-~-----------~~~v~~~~~~~~~~ll~~~d~--~v~~~G~~t~~Ea~~~ 321 (416)
T 1rrv_A 261 EAIRAQGRRVILSRGWT---EL--VLPD-D-----------RDDCFAIDEVNFQALFRRVAA--VIHHGSAGTEHVATRA 321 (416)
T ss_dssp HHHHHTTCCEEEECTTT---TC--CCSC-C-----------CTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHH
T ss_pred HHHHHCCCeEEEEeCCc---cc--cccC-C-----------CCCEEEeccCChHHHhccCCE--EEecCChhHHHHHHHc
Confidence 99999999999998876 21 0000 1 568999999999999999998 9999999999999999
Q ss_pred CCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 044012 384 GVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELA 463 (490)
Q Consensus 384 GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~ 463 (490)
|||+|++|...||+.||+++ ++.|+|+.++.. ++++++|.++|+++ + + ++|+++++++++++
T Consensus 322 G~P~i~~p~~~dQ~~na~~l-~~~g~g~~~~~~-----------~~~~~~l~~~i~~l-~-~----~~~~~~~~~~~~~~ 383 (416)
T 1rrv_A 322 GVPQLVIPRNTDQPYFAGRV-AALGIGVAHDGP-----------TPTFESLSAALTTV-L-A----PETRARAEAVAGMV 383 (416)
T ss_dssp TCCEEECCCSBTHHHHHHHH-HHHTSEEECSSS-----------CCCHHHHHHHHHHH-T-S----HHHHHHHHHHTTTC
T ss_pred CCCEEEccCCCCcHHHHHHH-HHCCCccCCCCC-----------CCCHHHHHHHHHHh-h-C----HHHHHHHHHHHHHH
Confidence 99999999999999999999 699999999766 78999999999999 8 6 69999999999988
Q ss_pred HHHHhcCCCcHHHHHHHH-HHHHh
Q 044012 464 KKAVEEGGSSCNDLKALI-EDIRL 486 (490)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~-~~~~~ 486 (490)
+ ..+|. .+.+.+ +.+.+
T Consensus 384 ~---~~~~~---~~~~~i~e~~~~ 401 (416)
T 1rrv_A 384 L---TDGAA---AAADLVLAAVGR 401 (416)
T ss_dssp C---CCHHH---HHHHHHHHHHHC
T ss_pred h---hcCcH---HHHHHHHHHHhc
Confidence 7 33333 334444 66544
No 13
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=7.7e-39 Score=323.50 Aligned_cols=372 Identities=16% Similarity=0.231 Sum_probs=247.1
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
|+..|+||||+|++.++.||++|+++||++|+++||+|++++++...+.+... +++++.++.. .+.
T Consensus 1 M~~~m~m~kIl~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~~---------g~~~~~~~~~-----~~~ 66 (430)
T 2iyf_A 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAAT---------GPRPVLYHST-----LPG 66 (430)
T ss_dssp -------CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTT---------SCEEEECCCC-----SCC
T ss_pred CCCccccceEEEEeCCCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHhC---------CCEEEEcCCc-----Ccc
Confidence 66667789999999999999999999999999999999999998876666554 6777766522 111
Q ss_pred CccCCCC-CCC-hhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhh
Q 044012 81 GCENLMS-TST-PETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLE 158 (490)
Q Consensus 81 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 158 (490)
....... ... ...+..+...+......+.+++++.+||+||+|.+.+++..+|+.+|||+|.+++.+...........
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 146 (430)
T 2iyf_A 67 PDADPEAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVA 146 (430)
T ss_dssp TTSCGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTH
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccc
Confidence 1110000 001 11222222333455677888888899999999987778999999999999998765420000000000
Q ss_pred hcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHH------HHHhhhcccEEEEcchhhcChHHHHH
Q 044012 159 HHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDE------LNNAERKSFGVLMNSFYELEPAYADH 232 (490)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~~~l~~~~~~~ 232 (490)
.. .... ...++. ...+ . ..+.+...+ .......++.+++++...++..
T Consensus 147 ~~---------~~~~-~~~~~~--------~~~~-~---~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~---- 200 (430)
T 2iyf_A 147 EP---------MWRE-PRQTER--------GRAY-Y---ARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPH---- 200 (430)
T ss_dssp HH---------HHHH-HHHSHH--------HHHH-H---HHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTT----
T ss_pred cc---------hhhh-hccchH--------HHHH-H---HHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCC----
Confidence 00 0000 000000 0000 0 000000000 0011123566778887766642
Q ss_pred HHhhhCCc-eEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc-C
Q 044012 233 FRRVTGKK-AWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES-G 310 (490)
Q Consensus 233 ~~~~~~~~-~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~ 310 (490)
...++++ ++++||..... .+..+|.+..+++++||+++||......+.+..+++++++. +
T Consensus 201 -~~~~~~~~v~~vG~~~~~~-----------------~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~ 262 (430)
T 2iyf_A 201 -ADRVDEDVYTFVGACQGDR-----------------AEEGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPG 262 (430)
T ss_dssp -GGGSCTTTEEECCCCC----------------------CCCCCCCTTCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTT
T ss_pred -cccCCCccEEEeCCcCCCC-----------------CCCCCCccccCCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCC
Confidence 1345667 99999854321 11234655445678999999999855567788899999885 8
Q ss_pred CceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeec
Q 044012 311 HSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTW 390 (490)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~ 390 (490)
++++|.+|.. .+..++.. + ++|+.+.+|+|+.++|+++++ ||||||+||+.||+++|+|+|++
T Consensus 263 ~~~~~~~G~~---~~~~~l~~-~-----------~~~v~~~~~~~~~~~l~~ad~--~v~~~G~~t~~Ea~~~G~P~i~~ 325 (430)
T 2iyf_A 263 WHLVLQIGRK---VTPAELGE-L-----------PDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAV 325 (430)
T ss_dssp EEEEEECC------CGGGGCS-C-----------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEEC
T ss_pred eEEEEEeCCC---CChHHhcc-C-----------CCCeEEEecCCHHHHhhccCE--EEECCCccHHHHHHHhCCCEEEC
Confidence 8999998865 22111111 1 568999999999999999999 99999999999999999999999
Q ss_pred cCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 391 PVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 391 P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
|..+||..||.++ ++.|+|+.+... .+++++|.++|.++++ + +++++++.++++++.
T Consensus 326 p~~~~q~~~a~~~-~~~g~g~~~~~~-----------~~~~~~l~~~i~~ll~-~----~~~~~~~~~~~~~~~ 382 (430)
T 2iyf_A 326 PQAVDQFGNADML-QGLGVARKLATE-----------EATADLLRETALALVD-D----PEVARRLRRIQAEMA 382 (430)
T ss_dssp CCSHHHHHHHHHH-HHTTSEEECCCC------------CCHHHHHHHHHHHHH-C----HHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHH-HHcCCEEEcCCC-----------CCCHHHHHHHHHHHHc-C----HHHHHHHHHHHHHHH
Confidence 9999999999999 599999999765 7899999999999998 5 589999999998887
No 14
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=100.00 E-value=3.2e-39 Score=327.23 Aligned_cols=382 Identities=14% Similarity=0.105 Sum_probs=244.1
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCc--
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGC-- 82 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 82 (490)
..||||+|++.++.||++|+++||++|+++||+|+|++++.+.+.++.. +++|+.++......++....
T Consensus 18 ~~~mrIl~~~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~~~~v~~~---------G~~~~~i~~~~~~~~~~~~~~~ 88 (441)
T 2yjn_A 18 GSHMRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAA---------GLTAVPVGTDVDLVDFMTHAGH 88 (441)
T ss_dssp -CCCEEEEECCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGGHHHHHTT---------TCCEEECSCCCCHHHHHHHTTH
T ss_pred CCccEEEEEcCCCcchHhHHHHHHHHHHHCCCeEEEEeCchhHHHHHhC---------CCceeecCCccchHHHhhhhhc
Confidence 5679999999999999999999999999999999999999887777765 78888886331000000000
Q ss_pred cC------CCC----CC--ChhhHhhHHHHH----H-----h-hHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCe
Q 044012 83 EN------LMS----TS--TPETTKKLFPAL----E-----L-LRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPR 140 (490)
Q Consensus 83 ~~------~~~----~~--~~~~~~~~~~~~----~-----~-~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~ 140 (490)
.. ... .. ....+....... . . ....+.+++++++||+||+|.+++++..+|+.+|||+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~ 168 (441)
T 2yjn_A 89 DIIDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPH 168 (441)
T ss_dssp HHHHHHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCE
T ss_pred ccccccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCE
Confidence 00 000 00 001111111111 1 1 4566667777889999999998788999999999999
Q ss_pred EEEecccHHHHHHHHhhhhcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhc-------
Q 044012 141 LAFTGSGFFNNCVSHSLEHHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERK------- 213 (490)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 213 (490)
|.+...+.........+... ....|... .. . .+.+.+.........
T Consensus 169 v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~----~~-----~-------~~~~~l~~~~~~~g~~~~~~~~ 221 (441)
T 2yjn_A 169 ARLLWGPDITTRARQNFLGL-----------LPDQPEEH----RE-----D-------PLAEWLTWTLEKYGGPAFDEEV 221 (441)
T ss_dssp EEECSSCCHHHHHHHHHHHH-----------GGGSCTTT----CC-----C-------HHHHHHHHHHHHTTCCCCCGGG
T ss_pred EEEecCCCcchhhhhhhhhh-----------cccccccc----cc-----c-------hHHHHHHHHHHHcCCCCCCccc
Confidence 99865443221111100000 00001000 00 0 011112221111100
Q ss_pred --ccEEEEcchhhcChHHHHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCc
Q 044012 214 --SFGVLMNSFYELEPAYADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSL 291 (490)
Q Consensus 214 --~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~ 291 (490)
.+.++......++++ ..++. ..+++... ..+.++.+|++..+++++|||++||.
T Consensus 222 ~~~~~~l~~~~~~~~~~------~~~~~--~~~~~~~~----------------~~~~~~~~~l~~~~~~~~v~v~~Gs~ 277 (441)
T 2yjn_A 222 VVGQWTIDPAPAAIRLD------TGLKT--VGMRYVDY----------------NGPSVVPEWLHDEPERRRVCLTLGIS 277 (441)
T ss_dssp TSCSSEEECSCGGGSCC------CCCCE--EECCCCCC----------------CSSCCCCGGGSSCCSSCEEEEEC---
T ss_pred cCCCeEEEecCccccCC------CCCCC--CceeeeCC----------------CCCcccchHhhcCCCCCEEEEECCCC
Confidence 111222221122210 01110 11222110 01345678998666788999999998
Q ss_pred ccC---CHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceee
Q 044012 292 TRF---SKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGF 368 (490)
Q Consensus 292 ~~~---~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ 368 (490)
... ..+.+..+++++.+.++++||+.++. . ... +.. .++|+++.+|+||.++|+++++ |
T Consensus 278 ~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~---~----~~~-l~~--------~~~~v~~~~~~~~~~ll~~ad~--~ 339 (441)
T 2yjn_A 278 SRENSIGQVSIEELLGAVGDVDAEIIATFDAQ---Q----LEG-VAN--------IPDNVRTVGFVPMHALLPTCAA--T 339 (441)
T ss_dssp -------CCSTTTTHHHHHTSSSEEEECCCTT---T----TSS-CSS--------CCSSEEECCSCCHHHHGGGCSE--E
T ss_pred cccccChHHHHHHHHHHHHcCCCEEEEEECCc---c----hhh-hcc--------CCCCEEEecCCCHHHHHhhCCE--E
Confidence 763 34567788899999999999998865 1 111 110 1569999999999999999999 9
Q ss_pred cccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHH
Q 044012 369 LTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQE 448 (490)
Q Consensus 369 ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~ 448 (490)
|||||+||+.||+++|||+|++|...||+.||.++ ++.|+|+.++.. ++++++|.++|+++|+ +
T Consensus 340 V~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l-~~~g~g~~~~~~-----------~~~~~~l~~~i~~ll~-~--- 403 (441)
T 2yjn_A 340 VHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRT-QEFGAGIALPVP-----------ELTPDQLRESVKRVLD-D--- 403 (441)
T ss_dssp EECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHH-HHHTSEEECCTT-----------TCCHHHHHHHHHHHHH-C---
T ss_pred EECCCHHHHHHHHHhCCCEEEeCCcccHHHHHHHH-HHcCCEEEcccc-----------cCCHHHHHHHHHHHhc-C---
Confidence 99999999999999999999999999999999999 599999999876 7899999999999998 5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 044012 449 AVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDIRL 486 (490)
Q Consensus 449 ~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 486 (490)
++++++++++++++. +.++ ...+.+.++++..
T Consensus 404 -~~~~~~~~~~~~~~~---~~~~--~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 404 -PAHRAGAARMRDDML---AEPS--PAEVVGICEELAA 435 (441)
T ss_dssp -HHHHHHHHHHHHHHH---TSCC--HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH---cCCC--HHHHHHHHHHHHH
Confidence 699999999999987 3333 3445555555543
No 15
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=100.00 E-value=3.4e-38 Score=313.99 Aligned_cols=364 Identities=15% Similarity=0.117 Sum_probs=249.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC-
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM- 86 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~- 86 (490)
|||++++.++.||++|+++||++|+++||+|++++++...+.+... +++++.++................
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTGV---------GLPAVATTDLPIRHFITTDREGRPE 71 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHT---------TCCEEESCSSCHHHHHHBCTTSCBC
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHhC---------CCEEEEeCCcchHHHHhhhcccCcc
Confidence 6999999999999999999999999999999999998776666655 677777753210000000000000
Q ss_pred CC-CChhhH----hh-HHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhc
Q 044012 87 ST-STPETT----KK-LFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHH 160 (490)
Q Consensus 87 ~~-~~~~~~----~~-~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 160 (490)
.. ...... .. +..........+.+.+++.+||+||+|.+..++..+|+.+|||+|.+...+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~----------- 140 (384)
T 2p6p_A 72 AIPSDPVAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVD----------- 140 (384)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCC-----------
T ss_pred ccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcc-----------
Confidence 00 100111 11 11122334567777788889999999988778889999999999987532100
Q ss_pred CCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhh-----hcccEEEEcchhhcChHHHHHHHh
Q 044012 161 QPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAE-----RKSFGVLMNSFYELEPAYADHFRR 235 (490)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~l~~~~~~~~~~ 235 (490)
...+ ... +......+.... ..++.++.++...++++ .
T Consensus 141 --------------~~~~-----------~~~-------~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~------~ 182 (384)
T 2p6p_A 141 --------------ADGI-----------HPG-------ADAELRPELSELGLERLPAPDLFIDICPPSLRPA------N 182 (384)
T ss_dssp --------------CTTT-----------HHH-------HHHHTHHHHHHTTCSSCCCCSEEEECSCGGGSCT------T
T ss_pred --------------cchh-----------hHH-------HHHHHHHHHHHcCCCCCCCCCeEEEECCHHHCCC------C
Confidence 0000 000 001111111111 01455677776655532 1
Q ss_pred hhC-CceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccC-----CHHHHHHHHHHHHHc
Q 044012 236 VTG-KKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRF-----SKEQTSEIAAALKES 309 (490)
Q Consensus 236 ~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~-----~~~~~~~~~~al~~~ 309 (490)
.++ .++.+++. . .+.++.+|++..+++++|||++||.... +.+.+..+++++.+.
T Consensus 183 ~~~~~~~~~~~~---~----------------~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~ 243 (384)
T 2p6p_A 183 AAPARMMRHVAT---S----------------RQCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW 243 (384)
T ss_dssp SCCCEECCCCCC---C----------------CCCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT
T ss_pred CCCCCceEecCC---C----------------CCCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHHhcC
Confidence 111 12222211 0 1234567887645678999999998764 457788999999999
Q ss_pred CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEee
Q 044012 310 GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVT 389 (490)
Q Consensus 310 ~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 389 (490)
+++++|+.++. +.. .+.. . ++|+.+ +|+||.++|+++++ ||||||+||+.||+++|+|+|+
T Consensus 244 ~~~~~~~~g~~-------~~~-----~l~~-~---~~~v~~-~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~v~ 304 (384)
T 2p6p_A 244 DVELIVAAPDT-------VAE-----ALRA-E---VPQARV-GWTPLDVVAPTCDL--LVHHAGGVSTLTGLSAGVPQLL 304 (384)
T ss_dssp TCEEEEECCHH-------HHH-----HHHH-H---CTTSEE-ECCCHHHHGGGCSE--EEECSCTTHHHHHHHTTCCEEE
T ss_pred CcEEEEEeCCC-------CHH-----hhCC-C---CCceEE-cCCCHHHHHhhCCE--EEeCCcHHHHHHHHHhCCCEEE
Confidence 99999998754 111 1111 1 668999 99999999999998 9999999999999999999999
Q ss_pred ccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc
Q 044012 390 WPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEE 469 (490)
Q Consensus 390 ~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~ 469 (490)
+|...||..||.++ ++.|+|+.++.. .+++++|.++|+++|+ + +++++++++++++++ ..
T Consensus 305 ~p~~~dq~~~a~~~-~~~g~g~~~~~~-----------~~~~~~l~~~i~~ll~-~----~~~~~~~~~~~~~~~---~~ 364 (384)
T 2p6p_A 305 IPKGSVLEAPARRV-ADYGAAIALLPG-----------EDSTEAIADSCQELQA-K----DTYARRAQDLSREIS---GM 364 (384)
T ss_dssp CCCSHHHHHHHHHH-HHHTSEEECCTT-----------CCCHHHHHHHHHHHHH-C----HHHHHHHHHHHHHHH---TS
T ss_pred ccCcccchHHHHHH-HHCCCeEecCcC-----------CCCHHHHHHHHHHHHc-C----HHHHHHHHHHHHHHH---hC
Confidence 99999999999999 699999998765 7899999999999998 5 689999999999998 34
Q ss_pred CCCcHHHHHHHHHHHHhhcC
Q 044012 470 GGSSCNDLKALIEDIRLYKH 489 (490)
Q Consensus 470 ~g~~~~~~~~~~~~~~~~~~ 489 (490)
+|. ..+.+.++.+..++|
T Consensus 365 ~~~--~~~~~~i~~~~~~~~ 382 (384)
T 2p6p_A 365 PLP--ATVVTALEQLAHHHH 382 (384)
T ss_dssp CCH--HHHHHHHHHHHHHHC
T ss_pred CCH--HHHHHHHHHHhhhcc
Confidence 433 444556666655443
No 16
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=100.00 E-value=9.4e-37 Score=305.04 Aligned_cols=350 Identities=15% Similarity=0.151 Sum_probs=221.6
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCC--c
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEG--C 82 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~ 82 (490)
..+|||+|++.++.||++|++.|+++|+++||+|++++++.+.+.+... ++.+..++.......+... .
T Consensus 13 ~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~---------G~~~~~~~~~~~~~~~~~~~~~ 83 (398)
T 4fzr_A 13 GSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGA---------GLPFAPTCPSLDMPEVLSWDRE 83 (398)
T ss_dssp --CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHT---------TCCEEEEESSCCHHHHHSBCTT
T ss_pred CCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhC---------CCeeEecCCccchHhhhhhhcc
Confidence 4679999999999999999999999999999999999998888877776 6777777621110000000 0
Q ss_pred cCCCCCC-C-hhhH----hhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHHHHh
Q 044012 83 ENLMSTS-T-PETT----KKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCVSHS 156 (490)
Q Consensus 83 ~~~~~~~-~-~~~~----~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 156 (490)
....... . .... ..+..........+.+++++++||+|++|...+++..+|+.+|||+|.+.............
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~ 163 (398)
T 4fzr_A 84 GNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIKSA 163 (398)
T ss_dssp SCBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHHHHH
T ss_pred CcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhhhHH
Confidence 0000000 0 0111 11112223445678888888999999999877789999999999999875442111000000
Q ss_pred hhhcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhh-----hcccEEEEcchhhcChHHHH
Q 044012 157 LEHHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAE-----RKSFGVLMNSFYELEPAYAD 231 (490)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~l~~~~~~ 231 (490)
..+........+ ......+......+..
T Consensus 164 -------------------------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 196 (398)
T 4fzr_A 164 -------------------------------------------GVGELAPELAELGLTDFPDPLLSIDVCPPSMEA---- 196 (398)
T ss_dssp -------------------------------------------HHHHTHHHHHTTTCSSCCCCSEEEECSCGGGC-----
T ss_pred -------------------------------------------HHHHHHHHHHHcCCCCCCCCCeEEEeCChhhCC----
Confidence 000000000000 0011112222111111
Q ss_pred HHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccC--------CHHHHHHHH
Q 044012 232 HFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRF--------SKEQTSEIA 303 (490)
Q Consensus 232 ~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~--------~~~~~~~~~ 303 (490)
........+.++++.. .+.++.+|+...+++++|||++||.... ..+.+..++
T Consensus 197 -~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~ 257 (398)
T 4fzr_A 197 -QPKPGTTKMRYVPYNG------------------RNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALS 257 (398)
T ss_dssp ----CCCEECCCCCCCC------------------SSCCCCHHHHSCCSSCEEECC----------------CCSHHHHH
T ss_pred -CCCCCCCCeeeeCCCC------------------CCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHHH
Confidence 1000000111111100 1344566766555678999999998652 345688899
Q ss_pred HHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHh
Q 044012 304 AALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSA 383 (490)
Q Consensus 304 ~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~ 383 (490)
+++.+.++++||+.++. .. ..+.. .++|+++.+|+|+.++|++|++ ||||||.||+.||+++
T Consensus 258 ~al~~~~~~~v~~~~~~---~~-~~l~~------------~~~~v~~~~~~~~~~ll~~ad~--~v~~gG~~t~~Ea~~~ 319 (398)
T 4fzr_A 258 QELPKLGFEVVVAVSDK---LA-QTLQP------------LPEGVLAAGQFPLSAIMPACDV--VVHHGGHGTTLTCLSE 319 (398)
T ss_dssp HHGGGGTCEEEECCCC------------------------CCTTEEEESCCCHHHHGGGCSE--EEECCCHHHHHHHHHT
T ss_pred HHHHhCCCEEEEEeCCc---ch-hhhcc------------CCCcEEEeCcCCHHHHHhhCCE--EEecCCHHHHHHHHHh
Confidence 99999999999998765 10 01111 1669999999999999999999 9999999999999999
Q ss_pred CCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 044012 384 GVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELA 463 (490)
Q Consensus 384 GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~ 463 (490)
|+|+|++|...||..||.++ ++.|+|+.++.. ++++++|.++|+++|+ + +++++++++.++++
T Consensus 320 G~P~v~~p~~~~q~~~a~~~-~~~g~g~~~~~~-----------~~~~~~l~~ai~~ll~-~----~~~~~~~~~~~~~~ 382 (398)
T 4fzr_A 320 GVPQVSVPVIAEVWDSARLL-HAAGAGVEVPWE-----------QAGVESVLAACARIRD-D----SSYVGNARRLAAEM 382 (398)
T ss_dssp TCCEEECCCSGGGHHHHHHH-HHTTSEEECC------------------CHHHHHHHHHH-C----THHHHHHHHHHHHH
T ss_pred CCCEEecCCchhHHHHHHHH-HHcCCEEecCcc-----------cCCHHHHHHHHHHHHh-C----HHHHHHHHHHHHHH
Confidence 99999999999999999999 699999999876 7899999999999999 4 49999999999998
Q ss_pred H
Q 044012 464 K 464 (490)
Q Consensus 464 ~ 464 (490)
.
T Consensus 383 ~ 383 (398)
T 4fzr_A 383 A 383 (398)
T ss_dssp T
T ss_pred H
Confidence 7
No 17
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=100.00 E-value=1.9e-35 Score=295.51 Aligned_cols=364 Identities=16% Similarity=0.201 Sum_probs=239.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCC-CC--
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLP-EG-- 81 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~-- 81 (490)
.++|||+|++.++.||++|+++||++|+++||+|+++++ .+.+.++.. ++.++.++......... ..
T Consensus 18 ~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~~---------G~~~~~~~~~~~~~~~~~~~~~ 87 (398)
T 3oti_A 18 GRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAAA---------GLEVVDVAPDYSAVKVFEQVAK 87 (398)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHTT---------TCEEEESSTTCCHHHHHHHHHH
T ss_pred hhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHhC---------CCeeEecCCccCHHHHhhhccc
Confidence 467999999999999999999999999999999999999 777777765 78888775221000000 00
Q ss_pred -cc----CC--CCCCCh-hhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHH
Q 044012 82 -CE----NL--MSTSTP-ETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCV 153 (490)
Q Consensus 82 -~~----~~--~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 153 (490)
.. .. ...... .....+..........+.+++++++||+||+|...+++..+|+.+|||+|.+........
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~~-- 165 (398)
T 3oti_A 88 DNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTR-- 165 (398)
T ss_dssp HCHHHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCCT--
T ss_pred CCccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCcc--
Confidence 00 00 000011 122222333345678888899999999999998888899999999999997643210000
Q ss_pred HHhhhhcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHH
Q 044012 154 SHSLEHHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHF 233 (490)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 233 (490)
.+.. ....+ +.................+......+. ..
T Consensus 166 -----------------------~~~~-------~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 203 (398)
T 3oti_A 166 -----------------------GMHR-------SIASF-------LTDLMDKHQVSLPEPVATIESFPPSLL-----LE 203 (398)
T ss_dssp -----------------------THHH-------HHHTT-------CHHHHHHTTCCCCCCSEEECSSCGGGG-----TT
T ss_pred -----------------------chhh-------HHHHH-------HHHHHHHcCCCCCCCCeEEEeCCHHHC-----CC
Confidence 0000 00000 111111110000011111111111111 00
Q ss_pred HhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccC--CHHHHHHHHHHHHHcCC
Q 044012 234 RRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRF--SKEQTSEIAAALKESGH 311 (490)
Q Consensus 234 ~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~--~~~~~~~~~~al~~~~~ 311 (490)
.......+.++ |. +.+.....|+...+++++|||++||.... ..+.+..+++++++.++
T Consensus 204 ~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~ 264 (398)
T 3oti_A 204 AEPEGWFMRWV-PY------------------GGGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAAAGEVDA 264 (398)
T ss_dssp SCCCSBCCCCC-CC------------------CCCEECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSS
T ss_pred CCCCCCCcccc-CC------------------CCCcCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHHHHHHHcCCC
Confidence 00000000111 00 01345567776666788999999998652 56678889999999999
Q ss_pred ceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeecc
Q 044012 312 SFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWP 391 (490)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P 391 (490)
+++|+.++. .. ..+.. + ++|+++.+|+|+.++|++|++ ||||||.||+.||+++|+|+|++|
T Consensus 265 ~~v~~~g~~---~~-~~l~~-~-----------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Eal~~G~P~v~~p 326 (398)
T 3oti_A 265 DFVLALGDL---DI-SPLGT-L-----------PRNVRAVGWTPLHTLLRTCTA--VVHHGGGGTVMTAIDAGIPQLLAP 326 (398)
T ss_dssp EEEEECTTS---CC-GGGCS-C-----------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECC
T ss_pred EEEEEECCc---Ch-hhhcc-C-----------CCcEEEEccCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEcC
Confidence 999998876 21 11111 1 669999999999999999999 999999999999999999999999
Q ss_pred CcccccchH--HHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc
Q 044012 392 VFAEQFNNE--KLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEE 469 (490)
Q Consensus 392 ~~~DQ~~na--~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~ 469 (490)
...||..|| .++ ++.|+|+.++.. +++++.|. ++|+ | ++++++++++++++. +.
T Consensus 327 ~~~dq~~~a~~~~~-~~~g~g~~~~~~-----------~~~~~~l~----~ll~-~----~~~~~~~~~~~~~~~---~~ 382 (398)
T 3oti_A 327 DPRDQFQHTAREAV-SRRGIGLVSTSD-----------KVDADLLR----RLIG-D----ESLRTAAREVREEMV---AL 382 (398)
T ss_dssp CTTCCSSCTTHHHH-HHHTSEEECCGG-----------GCCHHHHH----HHHH-C----HHHHHHHHHHHHHHH---TS
T ss_pred CCchhHHHHHHHHH-HHCCCEEeeCCC-----------CCCHHHHH----HHHc-C----HHHHHHHHHHHHHHH---hC
Confidence 999999999 999 699999999876 67887777 7888 5 699999999999988 33
Q ss_pred CCCcHHHHHHHHHHHH
Q 044012 470 GGSSCNDLKALIEDIR 485 (490)
Q Consensus 470 ~g~~~~~~~~~~~~~~ 485 (490)
.+ ...+.+.++++.
T Consensus 383 ~~--~~~~~~~l~~l~ 396 (398)
T 3oti_A 383 PT--PAETVRRIVERI 396 (398)
T ss_dssp CC--HHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHh
Confidence 33 344555555553
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=100.00 E-value=8.4e-35 Score=290.16 Aligned_cols=363 Identities=15% Similarity=0.152 Sum_probs=236.5
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEe-eCCCCcC-----CCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRIL-RFPSQEA-----GLPE 80 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~-----~~~~ 80 (490)
+|||+|++.++.||++|++.|+++|+++||+|++++++.+.+.+... ++.+..+ +.+.... ..+.
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~ 71 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGA---------GLTTAGIRGNDRTGDTGGTTQLRF 71 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHB---------TCEEEEC--------------CCS
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhC---------CCceeeecCCccchhhhhhhcccc
Confidence 48999999999999999999999999999999999988777766665 6777766 3111000 0000
Q ss_pred CccCCCCCCChhhHhhHHHHHHhh-------HHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHH
Q 044012 81 GCENLMSTSTPETTKKLFPALELL-------RPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCV 153 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 153 (490)
................+....... ...+.+++++++||+||+|...+++..+|+.+|||+|.+........
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~-- 149 (391)
T 3tsa_A 72 PNPAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPTA-- 149 (391)
T ss_dssp CCGGGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCTT--
T ss_pred cccccccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCcccc--
Confidence 000000011011111122222233 67778888889999999998777888899999999998754321000
Q ss_pred HHhhhhcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhh-----cccEEEEcchhhcChH
Q 044012 154 SHSLEHHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAER-----KSFGVLMNSFYELEPA 228 (490)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~l~~~ 228 (490)
. . +. .............+. .....+.....+++.
T Consensus 150 --------------------------~-----------~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 188 (391)
T 3tsa_A 150 --------------------------G-----------P-FS--DRAHELLDPVCRHHGLTGLPTPELILDPCPPSLQA- 188 (391)
T ss_dssp --------------------------T-----------H-HH--HHHHHHHHHHHHHTTSSSSCCCSEEEECSCGGGSC-
T ss_pred --------------------------c-----------c-cc--chHHHHHHHHHHHcCCCCCCCCceEEEecChhhcC-
Confidence 0 0 00 000001111111110 002222222111110
Q ss_pred HHHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCccc---CCHHHHHHHHHH
Q 044012 229 YADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTR---FSKEQTSEIAAA 305 (490)
Q Consensus 229 ~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~---~~~~~~~~~~~a 305 (490)
........+.++ |. ..+.....|+...+++++|++++||... ...+.+..++++
T Consensus 189 ----~~~~~~~~~~~~-p~------------------~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~ 245 (391)
T 3tsa_A 189 ----SDAPQGAPVQYV-PY------------------NGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA 245 (391)
T ss_dssp ----TTSCCCEECCCC-CC------------------CCCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH
T ss_pred ----CCCCccCCeeee-cC------------------CCCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh
Confidence 000000111111 10 0123455677665678899999999853 336778888888
Q ss_pred HHHc-CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhC
Q 044012 306 LKES-GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAG 384 (490)
Q Consensus 306 l~~~-~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~G 384 (490)
++. +++++|+.++. +... +.. .++|+++.+|+|+.++|++|++ ||||||.||++||+++|
T Consensus 246 -~~~p~~~~v~~~~~~-------~~~~-l~~--------~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G 306 (391)
T 3tsa_A 246 -TELPGVEAVIAVPPE-------HRAL-LTD--------LPDNARIAESVPLNLFLRTCEL--VICAGGSGTAFTATRLG 306 (391)
T ss_dssp -HTSTTEEEEEECCGG-------GGGG-CTT--------CCTTEEECCSCCGGGTGGGCSE--EEECCCHHHHHHHHHTT
T ss_pred -ccCCCeEEEEEECCc-------chhh-ccc--------CCCCEEEeccCCHHHHHhhCCE--EEeCCCHHHHHHHHHhC
Confidence 877 88999988765 1111 211 1669999999999999999999 99999999999999999
Q ss_pred CcEeeccCcccccchHHHHHHhhccceeecc--ccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 044012 385 VPMVTWPVFAEQFNNEKLVTQVLKFGLPVGN--EIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKEL 462 (490)
Q Consensus 385 vP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~--~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~ 462 (490)
+|+|++|...||..|+.++ ++.|+|+.+.. . ..+++.|.++|.++|+ + +++++++++++++
T Consensus 307 ~P~v~~p~~~~q~~~a~~~-~~~g~g~~~~~~~~-----------~~~~~~l~~ai~~ll~-~----~~~~~~~~~~~~~ 369 (391)
T 3tsa_A 307 IPQLVLPQYFDQFDYARNL-AAAGAGICLPDEQA-----------QSDHEQFTDSIATVLG-D----TGFAAAAIKLSDE 369 (391)
T ss_dssp CCEEECCCSTTHHHHHHHH-HHTTSEEECCSHHH-----------HTCHHHHHHHHHHHHT-C----THHHHHHHHHHHH
T ss_pred CCEEecCCcccHHHHHHHH-HHcCCEEecCcccc-----------cCCHHHHHHHHHHHHc-C----HHHHHHHHHHHHH
Confidence 9999999999999999999 69999999987 5 6899999999999999 4 4899999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHH
Q 044012 463 AKKAVEEGGSSCNDLKALIEDIR 485 (490)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~~~~ 485 (490)
+. + .+++ ..+.+.++++.
T Consensus 370 ~~---~-~~~~-~~~~~~i~~~~ 387 (391)
T 3tsa_A 370 IT---A-MPHP-AALVRTLENTA 387 (391)
T ss_dssp HH---T-SCCH-HHHHHHHHHC-
T ss_pred HH---c-CCCH-HHHHHHHHHHH
Confidence 87 3 3333 44555555543
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=100.00 E-value=1.3e-32 Score=276.19 Aligned_cols=368 Identities=15% Similarity=0.172 Sum_probs=242.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCc--
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGC-- 82 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 82 (490)
..+|||+|++.++.||++|++.||++|+++||+|++++++.+.+.+... ++.+..++.... .+++...
T Consensus 18 ~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~---------g~~~~~~~~~~~-~~~~~~~~~ 87 (412)
T 3otg_A 18 GRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKL---------GFEPVATGMPVF-DGFLAALRI 87 (412)
T ss_dssp CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHT---------TCEEEECCCCHH-HHHHHHHHH
T ss_pred cceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHhc---------CCceeecCcccc-cchhhhhhh
Confidence 4679999999999999999999999999999999999998776666655 778877752000 0000000
Q ss_pred --cC--CCCCCChhhHhhHHH----H-HHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecccHHHHHH
Q 044012 83 --EN--LMSTSTPETTKKLFP----A-LELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSGFFNNCV 153 (490)
Q Consensus 83 --~~--~~~~~~~~~~~~~~~----~-~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 153 (490)
.. ............+.. . .......+.+++++.+||+||+|....++..+|+.+|||+|............
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~~ 167 (412)
T 3otg_A 88 RFDTDSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTPDDL 167 (412)
T ss_dssp HHSCSCCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCCSHH
T ss_pred hhcccCCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCchhh
Confidence 00 000000011111111 1 12334677888888999999999877788889999999998864432100000
Q ss_pred HHhhhhcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHh----------hhcccEEEEcchh
Q 044012 154 SHSLEHHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNA----------ERKSFGVLMNSFY 223 (490)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~~ 223 (490)
.. .+.......... ...++.++..+-.
T Consensus 168 ~~-------------------------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~ 204 (412)
T 3otg_A 168 TR-------------------------------------------SIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPP 204 (412)
T ss_dssp HH-------------------------------------------HHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCG
T ss_pred hH-------------------------------------------HHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCH
Confidence 00 000000110000 0122223333322
Q ss_pred hcChHHHHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccc-cCCCCCCeEEEEEeCCcccCCHHHHHHH
Q 044012 224 ELEPAYADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSW-LNSRKPNSVLYICFGSLTRFSKEQTSEI 302 (490)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~v~vs~GS~~~~~~~~~~~~ 302 (490)
.++. ....+......+.+.... ......+| ....+++++|++++||......+.+..+
T Consensus 205 ~~~~-----~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~ 263 (412)
T 3otg_A 205 SLQE-----PEFRARPRRHELRPVPFA----------------EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAA 263 (412)
T ss_dssp GGSC-----HHHHTCTTEEECCCCCCC----------------CCCCCCGGGGGSCTTSCEEEEECTTTTCSCHHHHHHH
T ss_pred HhcC-----CcccCCCCcceeeccCCC----------------CCCCCCCccccccCCCCEEEEEcCCCCcCcHHHHHHH
Confidence 2221 111111111111111100 12334456 2323467899999999976667788889
Q ss_pred HHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCChhHHHHHHH
Q 044012 303 AAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVS 382 (490)
Q Consensus 303 ~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~ 382 (490)
++++.+.+.+++|..++. ....+++. + ++|+.+.+|+|+.++|+++++ ||+|||+||+.||++
T Consensus 264 ~~~l~~~~~~~~~~~g~~---~~~~~l~~-~-----------~~~v~~~~~~~~~~~l~~ad~--~v~~~g~~t~~Ea~a 326 (412)
T 3otg_A 264 IDGLAGLDADVLVASGPS---LDVSGLGE-V-----------PANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALG 326 (412)
T ss_dssp HHHHHTSSSEEEEECCSS---CCCTTCCC-C-----------CTTEEEESCCCHHHHGGGCSE--EEESCCHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEECCC---CChhhhcc-C-----------CCcEEEeCCCCHHHHHhcCcE--EEECCchHHHHHHHH
Confidence 999999999999999876 21111111 1 568999999999999999999 999999999999999
Q ss_pred hCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 044012 383 AGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKEL 462 (490)
Q Consensus 383 ~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~ 462 (490)
+|+|+|++|...||..|+.++ ++.|+|+.+... .+++++|.++|.++|+ + +.+++++.+.+++
T Consensus 327 ~G~P~v~~p~~~~q~~~~~~v-~~~g~g~~~~~~-----------~~~~~~l~~ai~~ll~-~----~~~~~~~~~~~~~ 389 (412)
T 3otg_A 327 AGVPQLSFPWAGDSFANAQAV-AQAGAGDHLLPD-----------NISPDSVSGAAKRLLA-E----ESYRAGARAVAAE 389 (412)
T ss_dssp HTCCEEECCCSTTHHHHHHHH-HHHTSEEECCGG-----------GCCHHHHHHHHHHHHH-C----HHHHHHHHHHHHH
T ss_pred hCCCEEecCCchhHHHHHHHH-HHcCCEEecCcc-----------cCCHHHHHHHHHHHHh-C----HHHHHHHHHHHHH
Confidence 999999999999999999999 699999999876 7899999999999999 5 6899999999888
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHH
Q 044012 463 AKKAVEEGGSSCNDLKALIEDIR 485 (490)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~~~~ 485 (490)
+. + ..+ ...+.+.++++.
T Consensus 390 ~~---~-~~~-~~~~~~~~~~l~ 407 (412)
T 3otg_A 390 IA---A-MPG-PDEVVRLLPGFA 407 (412)
T ss_dssp HH---H-SCC-HHHHHTTHHHHH
T ss_pred Hh---c-CCC-HHHHHHHHHHHh
Confidence 87 3 333 344455555443
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.97 E-value=1.5e-29 Score=249.01 Aligned_cols=323 Identities=16% Similarity=0.138 Sum_probs=201.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch--hhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA--RRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
.||+|...|+.||++|.++||++|++|||+|+|++++... +.+.+. ++.++.++... ++.. ..
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~---------g~~~~~i~~~~----~~~~--~~ 67 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKA---------GLPLHLIQVSG----LRGK--GL 67 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGG---------TCCEEECC---------------
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhc---------CCcEEEEECCC----cCCC--CH
Confidence 4899998888899999999999999999999999987653 344444 67777776221 1110 00
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCC
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPF 163 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 163 (490)
. ..+...+... ........++++.+||+||++..+. .+..+|+.+|||+|+.-
T Consensus 68 --~---~~~~~~~~~~-~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe------------------- 122 (365)
T 3s2u_A 68 --K---SLVKAPLELL-KSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHE------------------- 122 (365)
T ss_dssp ----------CHHHHH-HHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEE-------------------
T ss_pred --H---HHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEe-------------------
Confidence 0 1111111111 1123455678888999999997665 35678999999998631
Q ss_pred CCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceEE
Q 044012 164 KNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWH 243 (490)
Q Consensus 164 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~ 243 (490)
...+|++.++ +. .+.+..+.. ++++..+ ...+..+
T Consensus 123 --------~n~~~G~~nr-------------------------~l--~~~a~~v~~-~~~~~~~---------~~~k~~~ 157 (365)
T 3s2u_A 123 --------QNAVAGTANR-------------------------SL--APIARRVCE-AFPDTFP---------ASDKRLT 157 (365)
T ss_dssp --------CSSSCCHHHH-------------------------HH--GGGCSEEEE-SSTTSSC---------C---CEE
T ss_pred --------cchhhhhHHH-------------------------hh--ccccceeee-ccccccc---------CcCcEEE
Confidence 1112222211 10 111222222 2211110 1245667
Q ss_pred eccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc----CCceEEEEcc
Q 044012 244 LGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES----GHSFIWVVGK 319 (490)
Q Consensus 244 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~ 319 (490)
+|......... .. .......+++++|+|..||.... .....+.+++.++ +..++|.+|.
T Consensus 158 ~g~pvr~~~~~-------------~~--~~~~~~~~~~~~ilv~gGs~g~~--~~~~~~~~al~~l~~~~~~~vi~~~G~ 220 (365)
T 3s2u_A 158 TGNPVRGELFL-------------DA--HARAPLTGRRVNLLVLGGSLGAE--PLNKLLPEALAQVPLEIRPAIRHQAGR 220 (365)
T ss_dssp CCCCCCGGGCC-------------CT--TSSCCCTTSCCEEEECCTTTTCS--HHHHHHHHHHHTSCTTTCCEEEEECCT
T ss_pred ECCCCchhhcc-------------ch--hhhcccCCCCcEEEEECCcCCcc--ccchhhHHHHHhcccccceEEEEecCc
Confidence 77543321110 01 11122223567899999987642 2334456677654 4567777775
Q ss_pred CCCCCCchhhhccCchhHHHhhccCCCceEeeccchh-HhhhccCCceeecccCChhHHHHHHHhCCcEeeccCc----c
Q 044012 320 ILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ-VLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVF----A 394 (490)
Q Consensus 320 ~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~-~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~----~ 394 (490)
. +. +...+.....+.++.+.+|+++ .++|+.+|+ +|||+|.+|++|++++|+|+|.+|+. .
T Consensus 221 ~-------~~-----~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDl--vI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~ 286 (365)
T 3s2u_A 221 Q-------HA-----EITAERYRTVAVEADVAPFISDMAAAYAWADL--VICRAGALTVSELTAAGLPAFLVPLPHAIDD 286 (365)
T ss_dssp T-------TH-----HHHHHHHHHTTCCCEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECC-----CC
T ss_pred c-------cc-----ccccceecccccccccccchhhhhhhhccceE--EEecCCcchHHHHHHhCCCeEEeccCCCCCc
Confidence 5 11 1122222222568889999986 579999999 99999999999999999999999974 5
Q ss_pred cccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044012 395 EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHL 459 (490)
Q Consensus 395 DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l 459 (490)
+|..||+.+ ++.|+|+.++.. .+|++.|.++|.++|+ |.+...+|+++++++
T Consensus 287 ~Q~~NA~~l-~~~G~a~~l~~~-----------~~~~~~L~~~i~~ll~-d~~~~~~m~~~a~~~ 338 (365)
T 3s2u_A 287 HQTRNAEFL-VRSGAGRLLPQK-----------STGAAELAAQLSEVLM-HPETLRSMADQARSL 338 (365)
T ss_dssp HHHHHHHHH-HTTTSEEECCTT-----------TCCHHHHHHHHHHHHH-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HHCCCEEEeecC-----------CCCHHHHHHHHHHHHC-CHHHHHHHHHHHHhc
Confidence 899999999 599999999877 8999999999999999 433334455554443
No 21
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=208.71 Aligned_cols=163 Identities=24% Similarity=0.393 Sum_probs=138.1
Q ss_pred cCccccccccCCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccC
Q 044012 266 VSKHSCLSWLNSRKPNSVLYICFGSLTR-FSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRN 344 (490)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 344 (490)
+++.++.+|++..+++++|||++||... .+.+.+..+++++++.+++++|+.++. .. .. +
T Consensus 6 ~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~---~~----~~-~----------- 66 (170)
T 2o6l_A 6 PLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGN---KP----DT-L----------- 66 (170)
T ss_dssp CCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSS---CC----TT-C-----------
T ss_pred CCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCc---Cc----cc-C-----------
Confidence 3678999999876677899999999864 567788899999998899999999765 11 01 2
Q ss_pred CCceEeeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccC
Q 044012 345 DRGFIIKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQ 424 (490)
Q Consensus 345 ~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~ 424 (490)
++|+++.+|+|+.+++.|+.+.+||||||+||+.||+++|+|+|++|...||..||.++ ++.|+|+.++..
T Consensus 67 ~~~v~~~~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l-~~~g~g~~~~~~-------- 137 (170)
T 2o6l_A 67 GLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHM-KARGAAVRVDFN-------- 137 (170)
T ss_dssp CTTEEEESSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH-HTTTSEEECCTT--------
T ss_pred CCcEEEecCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHH-HHcCCeEEeccc--------
Confidence 55899999999999995555555999999999999999999999999999999999999 699999999876
Q ss_pred CCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 425 DSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 425 ~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
+++.++|.++|+++++ + ++|++++++++++++
T Consensus 138 ---~~~~~~l~~~i~~ll~-~----~~~~~~a~~~~~~~~ 169 (170)
T 2o6l_A 138 ---TMSSTDLLNALKRVIN-D----PSYKENVMKLSRIQH 169 (170)
T ss_dssp ---TCCHHHHHHHHHHHHH-C----HHHHHHHHHHC----
T ss_pred ---cCCHHHHHHHHHHHHc-C----HHHHHHHHHHHHHhh
Confidence 7899999999999998 5 689999999999876
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.87 E-value=1.6e-20 Score=184.69 Aligned_cols=305 Identities=13% Similarity=0.104 Sum_probs=191.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch--hhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA--RRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
|||++++.+..||..+++.||++|+++||+|++++..... +.+... ++++..++.+. ++..
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~---------g~~~~~~~~~~----~~~~---- 69 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKH---------GIEIDFIRISG----LRGK---- 69 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGG---------TCEEEECCCCC----CTTC----
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhcccc---------CCceEEecCCc----cCcC----
Confidence 8999999877799999999999999999999999986542 222222 57776665321 1100
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCCC
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQPF 163 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 163 (490)
.....+...... ......+.+++++.+||+|+++.... .+..++..+|+|+|......
T Consensus 70 ---~~~~~~~~~~~~-~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~---------------- 129 (364)
T 1f0k_A 70 ---GIKALIAAPLRI-FNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNG---------------- 129 (364)
T ss_dssp ---CHHHHHTCHHHH-HHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSS----------------
T ss_pred ---ccHHHHHHHHHH-HHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCC----------------
Confidence 000111111111 12244566777888999999986442 45678889999988642210
Q ss_pred CCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhCCceEE
Q 044012 164 KNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTGKKAWH 243 (490)
Q Consensus 164 ~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~ 243 (490)
.++ . ..+ ...+.++.++..+-.. + +++..
T Consensus 130 -----------~~~--------------~-----------~~~--~~~~~~d~v~~~~~~~------------~-~~~~~ 158 (364)
T 1f0k_A 130 -----------IAG--------------L-----------TNK--WLAKIATKVMQAFPGA------------F-PNAEV 158 (364)
T ss_dssp -----------SCC--------------H-----------HHH--HHTTTCSEEEESSTTS------------S-SSCEE
T ss_pred -----------CCc--------------H-----------HHH--HHHHhCCEEEecChhh------------c-CCceE
Confidence 000 0 000 0112334444433110 2 24555
Q ss_pred eccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc--CCceEEEEccCC
Q 044012 244 LGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES--GHSFIWVVGKIL 321 (490)
Q Consensus 244 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~ 321 (490)
+|.-..... .. +....+.+...+++++|++..|+.. .......+++|+..+ +.++++.+|..
T Consensus 159 i~n~v~~~~-------~~------~~~~~~~~~~~~~~~~il~~~g~~~--~~k~~~~li~a~~~l~~~~~~l~i~G~~- 222 (364)
T 1f0k_A 159 VGNPVRTDV-------LA------LPLPQQRLAGREGPVRVLVVGGSQG--ARILNQTMPQVAAKLGDSVTIWHQSGKG- 222 (364)
T ss_dssp CCCCCCHHH-------HT------SCCHHHHHTTCCSSEEEEEECTTTC--CHHHHHHHHHHHHHHGGGEEEEEECCTT-
T ss_pred eCCccchhh-------cc------cchhhhhcccCCCCcEEEEEcCchH--hHHHHHHHHHHHHHhcCCcEEEEEcCCc-
Confidence 553221100 00 0001111222234567788778764 344556666777765 46667777765
Q ss_pred CCCCchhhhccCchhHHHhhccC-CCceEeeccch-hHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCc---ccc
Q 044012 322 KTDDDQEEESWLPDGFEDEVRRN-DRGFIIKGWAP-QVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVF---AEQ 396 (490)
Q Consensus 322 ~~~~~~~~~~~~p~~~~~~~~~~-~~nv~~~~~~p-~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~---~DQ 396 (490)
. . +.+.+..... .+|+.+.+|++ ...+++.+++ +|+++|.+++.||+++|+|+|+.|.. .||
T Consensus 223 --~-~--------~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q 289 (364)
T 1f0k_A 223 --S-Q--------QSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADV--VVCRSGALTVSEIAAAGLPALFVPFQHKDRQQ 289 (364)
T ss_dssp --C-H--------HHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECCCCCTTCHH
T ss_pred --h-H--------HHHHHHHhhcCCCceEEecchhhHHHHHHhCCE--EEECCchHHHHHHHHhCCCEEEeeCCCCchhH
Confidence 2 1 1222211111 25899999994 5789999999 99999999999999999999999987 799
Q ss_pred cchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHH
Q 044012 397 FNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVV 441 (490)
Q Consensus 397 ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~ 441 (490)
..|+..+ .+.|.|..++.. +++.++|.++|.++
T Consensus 290 ~~~~~~~-~~~g~g~~~~~~-----------d~~~~~la~~i~~l 322 (364)
T 1f0k_A 290 YWNALPL-EKAGAAKIIEQP-----------QLSVDAVANTLAGW 322 (364)
T ss_dssp HHHHHHH-HHTTSEEECCGG-----------GCCHHHHHHHHHTC
T ss_pred HHHHHHH-HhCCcEEEeccc-----------cCCHHHHHHHHHhc
Confidence 9999999 599999988765 67799999999998
No 23
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.67 E-value=1e-15 Score=143.08 Aligned_cols=119 Identities=8% Similarity=0.051 Sum_probs=89.9
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh-Hh
Q 044012 280 PNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ-VL 358 (490)
Q Consensus 280 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~-~~ 358 (490)
+.+.|+|++|... .......+++++.+.. ++.+++|.. .+ .-+.+...... .+|+.+..|+++ .+
T Consensus 156 ~~~~ILv~~GG~d--~~~l~~~vl~~L~~~~-~i~vv~G~~---~~-------~~~~l~~~~~~-~~~v~v~~~~~~m~~ 221 (282)
T 3hbm_A 156 KKYDFFICMGGTD--IKNLSLQIASELPKTK-IISIATSSS---NP-------NLKKLQKFAKL-HNNIRLFIDHENIAK 221 (282)
T ss_dssp CCEEEEEECCSCC--TTCHHHHHHHHSCTTS-CEEEEECTT---CT-------THHHHHHHHHT-CSSEEEEESCSCHHH
T ss_pred cCCeEEEEECCCc--hhhHHHHHHHHhhcCC-CEEEEECCC---ch-------HHHHHHHHHhh-CCCEEEEeCHHHHHH
Confidence 3567999999653 3335566777776644 677777766 21 11122222211 348999999986 56
Q ss_pred hhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccc
Q 044012 359 ILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNE 416 (490)
Q Consensus 359 ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~ 416 (490)
+++.+++ +||+|| +|++|+++.|+|+|++|...+|..||..+ ++.|++..+..-
T Consensus 222 ~m~~aDl--vI~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l-~~~G~~~~~~~~ 275 (282)
T 3hbm_A 222 LMNESNK--LIISAS-SLVNEALLLKANFKAICYVKNQESTATWL-AKKGYEVEYKYL 275 (282)
T ss_dssp HHHTEEE--EEEESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHH-HHTTCEEECGGG
T ss_pred HHHHCCE--EEECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHH-HHCCCEEEcchh
Confidence 9999999 999999 89999999999999999999999999999 599999998764
No 24
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.57 E-value=5.2e-15 Score=132.57 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=95.4
Q ss_pred CCCeEEEEEeCCcccCCHHHHHH-----HHHHHHHcC-CceEEEEccCCCCCC-c-hhh-hcc--------CchhH----
Q 044012 279 KPNSVLYICFGSLTRFSKEQTSE-----IAAALKESG-HSFIWVVGKILKTDD-D-QEE-ESW--------LPDGF---- 337 (490)
Q Consensus 279 ~~~~~v~vs~GS~~~~~~~~~~~-----~~~al~~~~-~~~i~~~~~~~~~~~-~-~~~-~~~--------~p~~~---- 337 (490)
+++++|||+.||.... .+.+.. +++++.+.+ .++++.+|.. .. . ..+ ... +|.+-
T Consensus 26 ~~~~~VlVtgGS~~~~-n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~---~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 101 (224)
T 2jzc_A 26 IEEKALFVTCGATVPF-PKLVSCVLSDEFCQELIQYGFVRLIIQFGRN---YSSEFEHLVQERGGQRESQKIPIDQFGCG 101 (224)
T ss_dssp CCSCCEEEECCSCCSC-HHHHHHHTSHHHHHHHHTTTCCCEEECCCSS---SCCCCCSHHHHHTCEECSCCCSSCTTCTT
T ss_pred CCCCEEEEEcCCchHH-HHHHHHHHHHHHHHHHhcCCCeEEEEEECCC---chhhHHHHHHhhhcccccccccccccccc
Confidence 3567899999997322 333333 348888777 7999999976 21 0 000 000 11000
Q ss_pred --HHhh--ccCCCceEeeccchh-Hhhhc-cCCceeecccCChhHHHHHHHhCCcEeeccCc----ccccchHHHHHHhh
Q 044012 338 --EDEV--RRNDRGFIIKGWAPQ-VLILE-HQAIGGFLTHCGWNSILEGVSAGVPMVTWPVF----AEQFNNEKLVTQVL 407 (490)
Q Consensus 338 --~~~~--~~~~~nv~~~~~~p~-~~ll~-~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~----~DQ~~na~rv~e~~ 407 (490)
..+. ....-++.+.+|+++ .++|+ .|++ +|||||.||+.|++++|+|+|++|.. .||..||+++ ++.
T Consensus 102 ~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~Adl--vIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l-~~~ 178 (224)
T 2jzc_A 102 DTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDL--VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKF-VEL 178 (224)
T ss_dssp CSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSC--EEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHH-HHH
T ss_pred ccccccccccCCceEEEeeccchHHHHHHhcCCE--EEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHH-HHC
Confidence 0000 000125667788876 47999 9999 99999999999999999999999984 3699999999 599
Q ss_pred ccceeeccccccccccCCCCccchhHHHHHHHHH
Q 044012 408 KFGLPVGNEIWKIWATQDSPVINRGNIKNAICVV 441 (490)
Q Consensus 408 G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~ 441 (490)
|+|+.+ ++++|.++|+++
T Consensus 179 G~~~~~----------------~~~~L~~~i~~l 196 (224)
T 2jzc_A 179 GYVWSC----------------APTETGLIAGLR 196 (224)
T ss_dssp SCCCEE----------------CSCTTTHHHHHH
T ss_pred CCEEEc----------------CHHHHHHHHHHH
Confidence 998654 446677777776
No 25
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.52 E-value=1.7e-11 Score=121.15 Aligned_cols=331 Identities=13% Similarity=0.075 Sum_probs=182.8
Q ss_pred CCcceEEEEcC--C--CCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 5 NQKLHVMFLPY--I--APGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 5 ~~~~~Il~~~~--~--~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
++||||++++. + ..|.-..+..|++.| +||+|++++............ ...++.+..++....
T Consensus 2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------ 68 (394)
T 3okp_A 2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYD-----KTLDYEVIRWPRSVM------ 68 (394)
T ss_dssp --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHH-----TTCSSEEEEESSSSC------
T ss_pred CCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhc-----cccceEEEEcccccc------
Confidence 46799999984 3 467778899999999 799999999876654212210 123566666652100
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEecccHHHHHHHHhhh
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSGFFNNCVSHSLE 158 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 158 (490)
. ... .....+.+++++.+||+|++..... ....++..+++|.+++.........
T Consensus 69 -------~---~~~--------~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------ 124 (394)
T 3okp_A 69 -------L---PTP--------TTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGW------ 124 (394)
T ss_dssp -------C---SCH--------HHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHH------
T ss_pred -------c---cch--------hhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhh------
Confidence 0 000 2234666778888999999876444 4566788899985553222111100
Q ss_pred hcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhh-
Q 044012 159 HHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVT- 237 (490)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~- 237 (490)
. . ............+.++.++..|-. ........+
T Consensus 125 --------------------------~----~---------~~~~~~~~~~~~~~~d~ii~~s~~-----~~~~~~~~~~ 160 (394)
T 3okp_A 125 --------------------------S----M---------LPGSRQSLRKIGTEVDVLTYISQY-----TLRRFKSAFG 160 (394)
T ss_dssp --------------------------T----T---------SHHHHHHHHHHHHHCSEEEESCHH-----HHHHHHHHHC
T ss_pred --------------------------h----h---------cchhhHHHHHHHHhCCEEEEcCHH-----HHHHHHHhcC
Confidence 0 0 000111122334567777776632 222333322
Q ss_pred -CCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc-----CC
Q 044012 238 -GKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES-----GH 311 (490)
Q Consensus 238 -~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~ 311 (490)
..++..+..-.....-.. ........+.+.+... ++..+++..|++. ....+..+++|+..+ +.
T Consensus 161 ~~~~~~vi~ngv~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~--~~Kg~~~li~a~~~l~~~~~~~ 230 (394)
T 3okp_A 161 SHPTFEHLPSGVDVKRFTP-------ATPEDKSATRKKLGFT-DTTPVIACNSRLV--PRKGQDSLIKAMPQVIAARPDA 230 (394)
T ss_dssp SSSEEEECCCCBCTTTSCC-------CCHHHHHHHHHHTTCC-TTCCEEEEESCSC--GGGCHHHHHHHHHHHHHHSTTC
T ss_pred CCCCeEEecCCcCHHHcCC-------CCchhhHHHHHhcCCC-cCceEEEEEeccc--cccCHHHHHHHHHHHHhhCCCe
Confidence 245666553222111000 0000112233333322 2324666677763 233455555665543 45
Q ss_pred ceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhH---hhhccCCceeecc-----------cCChhHH
Q 044012 312 SFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQV---LILEHQAIGGFLT-----------HCGWNSI 377 (490)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~~~~It-----------HGG~~s~ 377 (490)
++++ +|.. ..... +........+++.+.+|+|+. .++..+++ +|. -|..+++
T Consensus 231 ~l~i-~G~g---~~~~~--------l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~v~ps~~~~~~~~~e~~~~~~ 296 (394)
T 3okp_A 231 QLLI-VGSG---RYEST--------LRRLATDVSQNVKFLGRLEYQDMINTLAAADI--FAMPARTRGGGLDVEGLGIVY 296 (394)
T ss_dssp EEEE-ECCC---TTHHH--------HHHHTGGGGGGEEEEESCCHHHHHHHHHHCSE--EEECCCCBGGGTBCCSSCHHH
T ss_pred EEEE-EcCc---hHHHH--------HHHHHhcccCeEEEcCCCCHHHHHHHHHhCCE--EEecCccccccccccccCcHH
Confidence 5554 4444 21112 222111114689999999754 47889998 775 5667899
Q ss_pred HHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHH
Q 044012 378 LEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKAN 457 (490)
Q Consensus 378 ~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~ 457 (490)
.||+++|+|+|+.+. ......+ +. |.|+..+. -+.+++.++|.++++ +.+....+.++++
T Consensus 297 ~Ea~a~G~PvI~~~~----~~~~e~i-~~-~~g~~~~~-------------~d~~~l~~~i~~l~~-~~~~~~~~~~~~~ 356 (394)
T 3okp_A 297 LEAQACGVPVIAGTS----GGAPETV-TP-ATGLVVEG-------------SDVDKLSELLIELLD-DPIRRAAMGAAGR 356 (394)
T ss_dssp HHHHHTTCCEEECSS----TTGGGGC-CT-TTEEECCT-------------TCHHHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEeCC----CChHHHH-hc-CCceEeCC-------------CCHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 999999999999764 3344444 23 46777754 378999999999998 4333334445544
Q ss_pred HHH
Q 044012 458 HLK 460 (490)
Q Consensus 458 ~l~ 460 (490)
+..
T Consensus 357 ~~~ 359 (394)
T 3okp_A 357 AHV 359 (394)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 26
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.49 E-value=4.9e-11 Score=119.87 Aligned_cols=356 Identities=14% Similarity=0.083 Sum_probs=182.4
Q ss_pred CCcceEEEEcC-----------CCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCC
Q 044012 5 NQKLHVMFLPY-----------IAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPS 73 (490)
Q Consensus 5 ~~~~~Il~~~~-----------~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 73 (490)
.+||||++++. ...|+-..+..|+++|.++||+|++++........... ....+++++.++...
T Consensus 18 ~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~-----~~~~~v~v~~~~~~~ 92 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIV-----RVAENLRVINIAAGP 92 (438)
T ss_dssp -CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEE-----EEETTEEEEEECCSC
T ss_pred cchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccc-----cccCCeEEEEecCCC
Confidence 57899999995 23588888999999999999999999975432211100 001256666665321
Q ss_pred CcCCCCCCccCCCCCCChhhHhhHHHHHHhhHHHHHHH-hhcC-CCcEEEEcCCCc--chHHHHHHhCCCeEEEecccHH
Q 044012 74 QEAGLPEGCENLMSTSTPETTKKLFPALELLRPEIEKL-FREQ-NPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSGFF 149 (490)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~-~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~ 149 (490)
. . ..........+.. +...+.+. ++.. +||+|++..... .+..+++.+++|+|........
T Consensus 93 ~------~-----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~ 157 (438)
T 3c48_A 93 Y------E-----GLSKEELPTQLAA----FTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAA 157 (438)
T ss_dssp S------S-----SCCGGGGGGGHHH----HHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred c------c-----ccchhHHHHHHHH----HHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCCcc
Confidence 1 0 0000011111111 11222233 4433 499999875322 3445778889999876554322
Q ss_pred HHHHHHhhhhcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHH-HHHHHhhhcccEEEEcchhhcChH
Q 044012 150 NNCVSHSLEHHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMF-DELNNAERKSFGVLMNSFYELEPA 228 (490)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~ 228 (490)
.. . ..+.. ... . ..... .......+.++.++..+-..
T Consensus 158 ~~------------------~-----~~~~~---------~~~-~-----~~~~~~~~~~~~~~~~d~ii~~s~~~---- 195 (438)
T 3c48_A 158 VK------------------N-----SYRDD---------SDT-P-----ESEARRICEQQLVDNADVLAVNTQEE---- 195 (438)
T ss_dssp HH------------------S-----CC-------------CC-H-----HHHHHHHHHHHHHHHCSEEEESSHHH----
T ss_pred cc------------------c-----ccccc---------cCC-c-----chHHHHHHHHHHHhcCCEEEEcCHHH----
Confidence 11 0 00000 000 0 00001 11123345677777777322
Q ss_pred HHHHHHhhhC---CceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHH
Q 044012 229 YADHFRRVTG---KKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAA 305 (490)
Q Consensus 229 ~~~~~~~~~~---~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~a 305 (490)
.......++ .++..+..-.....-. . ........+.+-+... +...+++..|++.. ...+..+++|
T Consensus 196 -~~~~~~~~g~~~~k~~vi~ngvd~~~~~-~------~~~~~~~~~r~~~~~~-~~~~~i~~~G~~~~--~Kg~~~li~a 264 (438)
T 3c48_A 196 -MQDLMHHYDADPDRISVVSPGADVELYS-P------GNDRATERSRRELGIP-LHTKVVAFVGRLQP--FKGPQVLIKA 264 (438)
T ss_dssp -HHHHHHHHCCCGGGEEECCCCCCTTTSC-C------C----CHHHHHHTTCC-SSSEEEEEESCBSG--GGCHHHHHHH
T ss_pred -HHHHHHHhCCChhheEEecCCccccccC-C------cccchhhhhHHhcCCC-CCCcEEEEEeeecc--cCCHHHHHHH
Confidence 222322221 3455555322211000 0 0000000122222222 22345666787643 3345555555
Q ss_pred HHHc-------CCceEEEEccCCCCCCchhhhccCchhHHHhhcc--CCCceEeeccchh---HhhhccCCceeeccc--
Q 044012 306 LKES-------GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRR--NDRGFIIKGWAPQ---VLILEHQAIGGFLTH-- 371 (490)
Q Consensus 306 l~~~-------~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~nv~~~~~~p~---~~ll~~~~~~~~ItH-- 371 (490)
+..+ +.+ ++.+|.. ..... ..+.+.+.... ..++|.+.+++|+ ..+++.+++ +|.-
T Consensus 265 ~~~l~~~~p~~~~~-l~i~G~~---~~~g~----~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~ 334 (438)
T 3c48_A 265 VAALFDRDPDRNLR-VIICGGP---SGPNA----TPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADI--VAVPSF 334 (438)
T ss_dssp HHHHHHHCTTCSEE-EEEECCB---C----------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSE--EEECCS
T ss_pred HHHHHhhCCCcceE-EEEEeCC---CCCCc----HHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCE--EEECcc
Confidence 5543 233 3444541 00000 11122221110 1458999999975 468889998 6643
Q ss_pred --CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHH
Q 044012 372 --CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEA 449 (490)
Q Consensus 372 --GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~ 449 (490)
|..+++.||+++|+|+|+.+. ......+ +.-+.|+.++. -+.+++.++|.++++ +.+..
T Consensus 335 ~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~-------------~d~~~la~~i~~l~~-~~~~~ 395 (438)
T 3c48_A 335 NESFGLVAMEAQASGTPVIAARV----GGLPIAV-AEGETGLLVDG-------------HSPHAWADALATLLD-DDETR 395 (438)
T ss_dssp CCSSCHHHHHHHHTTCCEEEESC----TTHHHHS-CBTTTEEEESS-------------CCHHHHHHHHHHHHH-CHHHH
T ss_pred ccCCchHHHHHHHcCCCEEecCC----CChhHHh-hCCCcEEECCC-------------CCHHHHHHHHHHHHc-CHHHH
Confidence 345689999999999999753 4555666 46567877754 378999999999998 44434
Q ss_pred HHHHHHHHHHHHH
Q 044012 450 VKMRKKANHLKEL 462 (490)
Q Consensus 450 ~~~~~~a~~l~~~ 462 (490)
..+.+++++..++
T Consensus 396 ~~~~~~~~~~~~~ 408 (438)
T 3c48_A 396 IRMGEDAVEHART 408 (438)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4666666666655
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.43 E-value=2.1e-11 Score=119.97 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=83.2
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHHc-----CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccc
Q 044012 280 PNSVLYICFGSLTRFSKEQTSEIAAALKES-----GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWA 354 (490)
Q Consensus 280 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~ 354 (490)
++++|+++.|..... ..+..+++|+..+ +.++++..|.. . ... +.+.+.... .+++.+.+++
T Consensus 197 ~~~~vl~~~gr~~~~--k~~~~ll~a~~~l~~~~~~~~lv~~~g~~---~---~~~----~~l~~~~~~-~~~v~~~g~~ 263 (376)
T 1v4v_A 197 EGPYVTVTMHRRENW--PLLSDLAQALKRVAEAFPHLTFVYPVHLN---P---VVR----EAVFPVLKG-VRNFVLLDPL 263 (376)
T ss_dssp SSCEEEECCCCGGGG--GGHHHHHHHHHHHHHHCTTSEEEEECCSC---H---HHH----HHHHHHHTT-CTTEEEECCC
T ss_pred CCCEEEEEeCcccch--HHHHHHHHHHHHHHhhCCCeEEEEECCCC---H---HHH----HHHHHHhcc-CCCEEEECCC
Confidence 345677777754221 1456677776653 45655554543 1 011 112222211 3589988555
Q ss_pred h---hHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccch
Q 044012 355 P---QVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINR 431 (490)
Q Consensus 355 p---~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~ 431 (490)
+ ...+++.+++ ||+.+| |.+.||+++|+|+|+.+..+++.. ++ +.|.|+.++ .++
T Consensus 264 g~~~~~~~~~~ad~--~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~----~~-~~g~g~lv~--------------~d~ 321 (376)
T 1v4v_A 264 EYGSMAALMRASLL--LVTDSG-GLQEEGAALGVPVVVLRNVTERPE----GL-KAGILKLAG--------------TDP 321 (376)
T ss_dssp CHHHHHHHHHTEEE--EEESCH-HHHHHHHHTTCCEEECSSSCSCHH----HH-HHTSEEECC--------------SCH
T ss_pred CHHHHHHHHHhCcE--EEECCc-CHHHHHHHcCCCEEeccCCCcchh----hh-cCCceEECC--------------CCH
Confidence 4 4689999999 999884 446699999999999886666554 33 567787662 378
Q ss_pred hHHHHHHHHHhc
Q 044012 432 GNIKNAICVVMD 443 (490)
Q Consensus 432 ~~l~~~i~~~l~ 443 (490)
++|.++|.++++
T Consensus 322 ~~la~~i~~ll~ 333 (376)
T 1v4v_A 322 EGVYRVVKGLLE 333 (376)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 28
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.42 E-value=3e-11 Score=120.00 Aligned_cols=310 Identities=10% Similarity=0.094 Sum_probs=163.8
Q ss_pred CCcceEEEEcCC---C-CCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 5 NQKLHVMFLPYI---A-PGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 5 ~~~~~Il~~~~~---~-~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
.+||||+++... . .|.-..+..++++|.++||+|++++.............. . + ++..++..
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~----~-~-~~~~~~~~-------- 83 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVS----G-G-KAVPIPYN-------- 83 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEE----C-C-CCC-------------
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCccccc----C-C-cEEecccc--------
Confidence 468999999832 2 466678999999999999999999986543211111000 0 0 11111100
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEecccHHHHHHHHhhh
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGSGFFNNCVSHSLE 158 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 158 (490)
. ... ..... ......+.+++++.+||+|++..... .+..++..+++|+|..........
T Consensus 84 -~-~~~-----~~~~~-----~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------- 144 (406)
T 2gek_A 84 -G-SVA-----RLRFG-----PATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKS------- 144 (406)
T ss_dssp --------------CC-----HHHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCCSH-------
T ss_pred -C-Ccc-----ccccc-----HHHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcchhh-------
Confidence 0 000 00000 01234566667778999999876544 345667777999987644310000
Q ss_pred hcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhC
Q 044012 159 HHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTG 238 (490)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 238 (490)
. . .......+....+.++.++..+- .........++
T Consensus 145 -------------------------~-------~-------~~~~~~~~~~~~~~~d~ii~~s~-----~~~~~~~~~~~ 180 (406)
T 2gek_A 145 -------------------------L-------T-------LSVFQGILRPYHEKIIGRIAVSD-----LARRWQMEALG 180 (406)
T ss_dssp -------------------------H-------H-------HHHHHSTTHHHHTTCSEEEESSH-----HHHHHHHHHHS
T ss_pred -------------------------h-------h-------HHHHHHHHHHHHhhCCEEEECCH-----HHHHHHHHhcC
Confidence 0 0 00000001133456666666662 22222323333
Q ss_pred -CceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCc-ccCCHHHHHHHHHHHHHc-----CC
Q 044012 239 -KKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSL-TRFSKEQTSEIAAALKES-----GH 311 (490)
Q Consensus 239 -~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~-~~~~~~~~~~~~~al~~~-----~~ 311 (490)
.++ .+..-.... . .. . ...-..+ . +...+++..|++ . ....+..+++++..+ +.
T Consensus 181 ~~~~-vi~~~v~~~----~-~~-~------~~~~~~~-~---~~~~~i~~~G~~~~--~~Kg~~~li~a~~~l~~~~~~~ 241 (406)
T 2gek_A 181 SDAV-EIPNGVDVA----S-FA-D------APLLDGY-P---REGRTVLFLGRYDE--PRKGMAVLLAALPKLVARFPDV 241 (406)
T ss_dssp SCEE-ECCCCBCHH----H-HH-T------CCCCTTC-S---CSSCEEEEESCTTS--GGGCHHHHHHHHHHHHTTSTTC
T ss_pred CCcE-EecCCCChh----h-cC-C------Cchhhhc-c---CCCeEEEEEeeeCc--cccCHHHHHHHHHHHHHHCCCe
Confidence 233 443211100 0 00 0 0000001 0 011355667776 3 233455566666653 44
Q ss_pred ceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh---HhhhccCCceeecc----cCC-hhHHHHHHHh
Q 044012 312 SFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ---VLILEHQAIGGFLT----HCG-WNSILEGVSA 383 (490)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~---~~ll~~~~~~~~It----HGG-~~s~~eal~~ 383 (490)
+++ .+|.. .. +.+.+......+++.+.+++++ ..++..+++ +|. +.| .+++.||+++
T Consensus 242 ~l~-i~G~~---~~---------~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~e~~~~~~~Ea~a~ 306 (406)
T 2gek_A 242 EIL-IVGRG---DE---------DELREQAGDLAGHLRFLGQVDDATKASAMRSADV--YCAPHLGGESFGIVLVEAMAA 306 (406)
T ss_dssp EEE-EESCS---CH---------HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSE--EEECCCSCCSSCHHHHHHHHH
T ss_pred EEE-EEcCC---cH---------HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCE--EEecCCCCCCCchHHHHHHHc
Confidence 544 44544 11 1222222211458999999986 578999999 653 334 4489999999
Q ss_pred CCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 384 GVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 384 GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
|+|+|+.+. ......+ +.-+.|+..+. -+.+++.++|.++++
T Consensus 307 G~PvI~~~~----~~~~e~i-~~~~~g~~~~~-------------~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 307 GTAVVASDL----DAFRRVL-ADGDAGRLVPV-------------DDADGMAAALIGILE 348 (406)
T ss_dssp TCEEEECCC----HHHHHHH-TTTTSSEECCT-------------TCHHHHHHHHHHHHH
T ss_pred CCCEEEecC----CcHHHHh-cCCCceEEeCC-------------CCHHHHHHHHHHHHc
Confidence 999999755 4556666 45567877754 378999999999998
No 29
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.37 E-value=5.7e-12 Score=124.79 Aligned_cols=327 Identities=12% Similarity=0.077 Sum_probs=170.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhhhhhcccccCCCceEE-EEeeCCCCcCCCCCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTMNARRFQNAIDRDSRLGREISL-RILRFPSQEAGLPEGC 82 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~ 82 (490)
++||||+++. ++.....=+..|.++|.++ |+++.++.+....+.....+.. .++.. ..+. +...
T Consensus 23 ~~m~ki~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~-----~~i~~~~~l~-------~~~~- 88 (396)
T 3dzc_A 23 NAMKKVLIVF-GTRPEAIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLEL-----FSITPDFDLN-------IMEP- 88 (396)
T ss_dssp -CCEEEEEEE-CSHHHHHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHH-----TTCCCSEECC-------CCCT-
T ss_pred CCCCeEEEEE-eccHhHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHh-----cCCCCceeee-------cCCC-
Confidence 5678998888 7777788889999999987 8999766665543322221110 01110 0110 0000
Q ss_pred cCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcC--CC-cchHHHHHHhCCCeEEEecccHHHHHHHHhhhh
Q 044012 83 ENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDN--LF-PWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEH 159 (490)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~--~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 159 (490)
. .. ...........+.+++++.+||+|++-. .. ..+..+|..+|||.+.+...
T Consensus 89 -----~--~~----~~~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag------------- 144 (396)
T 3dzc_A 89 -----G--QT----LNGVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAG------------- 144 (396)
T ss_dssp -----T--CC----HHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCC-------------
T ss_pred -----C--CC----HHHHHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECC-------------
Confidence 0 01 1112234456777888888999999743 22 23567899999997654110
Q ss_pred cCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCch-hhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHh-hh
Q 044012 160 HQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGF-SAMFDELNNAERKSFGVLMNSFYELEPAYADHFRR-VT 237 (490)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~-~~ 237 (490)
+... .+.. .+ ....+.+. .+.++.++..+ +.....+.. ..
T Consensus 145 ------------------~rs~--~~~~-----------~~~~~~~r~~~--~~~a~~~~~~s-----e~~~~~l~~~G~ 186 (396)
T 3dzc_A 145 ------------------LRTG--NIYS-----------PWPEEGNRKLT--AALTQYHFAPT-----DTSRANLLQENY 186 (396)
T ss_dssp ------------------CCCS--CTTS-----------STTHHHHHHHH--HHTCSEEEESS-----HHHHHHHHHTTC
T ss_pred ------------------cccc--cccc-----------CCcHHHHHHHH--HHhcCEEECCC-----HHHHHHHHHcCC
Confidence 1000 0000 01 11111111 12345555555 222222222 11
Q ss_pred -CCceEEeccccCCCCCCcchhccCCCCccCccccccccCC-CCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc-----C
Q 044012 238 -GKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNS-RKPNSVLYICFGSLTRFSKEQTSEIAAALKES-----G 310 (490)
Q Consensus 238 -~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~ 310 (490)
+.++..+|....+...... ...........++.+.+.. .+++++|+++.+-..... +.+..+++|+.++ +
T Consensus 187 ~~~ki~vvGn~~~d~~~~~~--~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~-~~~~~ll~A~~~l~~~~~~ 263 (396)
T 3dzc_A 187 NAENIFVTGNTVIDALLAVR--EKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFG-GGFERICQALITTAEQHPE 263 (396)
T ss_dssp CGGGEEECCCHHHHHHHHHH--HHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCT-THHHHHHHHHHHHHHHCTT
T ss_pred CcCcEEEECCcHHHHHHHhh--hhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccch-hHHHHHHHHHHHHHHhCCC
Confidence 2468888842221100000 0000000000223333331 234567777652212211 2356677777653 4
Q ss_pred CceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccc---hhHhhhccCCceeecccCChhHHHHHHHhCCcE
Q 044012 311 HSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWA---PQVLILEHQAIGGFLTHCGWNSILEGVSAGVPM 387 (490)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~---p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~ 387 (490)
.++|+..+.+ . .... .+.+... ..+++.+.+++ ....+++.+++ +|+-.| |.+.||.++|+|+
T Consensus 264 ~~~v~~~g~~---~---~~~~----~l~~~~~-~~~~v~~~~~lg~~~~~~l~~~ad~--vv~~SG-g~~~EA~a~G~Pv 329 (396)
T 3dzc_A 264 CQILYPVHLN---P---NVRE----PVNKLLK-GVSNIVLIEPQQYLPFVYLMDRAHI--ILTDSG-GIQEEAPSLGKPV 329 (396)
T ss_dssp EEEEEECCBC---H---HHHH----HHHHHTT-TCTTEEEECCCCHHHHHHHHHHCSE--EEESCS-GGGTTGGGGTCCE
T ss_pred ceEEEEeCCC---h---HHHH----HHHHHHc-CCCCEEEeCCCCHHHHHHHHHhcCE--EEECCc-cHHHHHHHcCCCE
Confidence 5666655533 1 1111 1122111 14589887776 45678999999 999887 5557999999999
Q ss_pred eeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 388 VTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 388 l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
|+..-..+++ .++ ..|.++.+. .++++|.++|.++++
T Consensus 330 V~~~~~~~~~----e~v-~~G~~~lv~--------------~d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 330 LVMRETTERP----EAV-AAGTVKLVG--------------TNQQQICDALSLLLT 366 (396)
T ss_dssp EECCSSCSCH----HHH-HHTSEEECT--------------TCHHHHHHHHHHHHH
T ss_pred EEccCCCcch----HHH-HcCceEEcC--------------CCHHHHHHHHHHHHc
Confidence 9975555542 243 668775542 368999999999998
No 30
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.37 E-value=3e-10 Score=116.20 Aligned_cols=381 Identities=14% Similarity=0.082 Sum_probs=183.0
Q ss_pred CCCCCCcceEEEEcCC---------------CCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccC--CCc
Q 044012 1 MVSENQKLHVMFLPYI---------------APGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRL--GRE 63 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~---------------~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~--~~~ 63 (490)
|.++.++|||++++.. ..|.-..+..|+++|+++||+|++++.................. ..+
T Consensus 1 m~~m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~g 80 (499)
T 2r60_A 1 MVEMTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNK 80 (499)
T ss_dssp ------CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSS
T ss_pred CccccccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCC
Confidence 6676677999999842 35677788999999999999999998754321101100000000 136
Q ss_pred eEEEEeeCCCCcCCCCCCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhc--CCCcEEEEcCCCc--chHHHHHHhCCC
Q 044012 64 ISLRILRFPSQEAGLPEGCENLMSTSTPETTKKLFPALELLRPEIEKLFRE--QNPNCIVSDNLFP--WTVSIAEELGIP 139 (490)
Q Consensus 64 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~VI~D~~~~--~~~~~A~~lgiP 139 (490)
++++.++.... .. . .....+..+. .....+.+++++ .+||+|.+..... .+..++..+|+|
T Consensus 81 v~v~~~~~~~~------~~--~---~~~~~~~~~~----~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~p 145 (499)
T 2r60_A 81 VRIVRIPFGGD------KF--L---PKEELWPYLH----EYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLP 145 (499)
T ss_dssp EEEEEECCSCS------SC--C---CGGGCGGGHH----HHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCCC
T ss_pred eEEEEecCCCc------CC--c---CHHHHHHHHH----HHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHhcCCc
Confidence 77777753211 00 0 0001111111 112344555665 5899999875322 345577888999
Q ss_pred eEEEecccHHHHHHHHhhhhcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEE
Q 044012 140 RLAFTGSGFFNNCVSHSLEHHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLM 219 (490)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (490)
+|........... ... ...+... ..+... + .+...........+.++.++.
T Consensus 146 ~v~~~H~~~~~~~--~~~----------------~~~~~~~------~~~~~~-~----~~~~~~~~~~~~~~~ad~vi~ 196 (499)
T 2r60_A 146 FTFTGHSLGAQKM--EKL----------------NVNTSNF------KEMDER-F----KFHRRIIAERLTMSYADKIIV 196 (499)
T ss_dssp EEEECSSCHHHHH--HTT----------------CCCSTTS------HHHHHH-H----CHHHHHHHHHHHHHHCSEEEE
T ss_pred EEEEccCcccccc--hhh----------------ccCCCCc------chhhhh-H----HHHHHHHHHHHHHhcCCEEEE
Confidence 8876554322210 000 0000000 000000 0 000011111234556777777
Q ss_pred cchhhcChHHHHHHHhh--hC--------CceEEeccccCCCCCCcchhccCCCCccCccccccccC-----CCCCCeEE
Q 044012 220 NSFYELEPAYADHFRRV--TG--------KKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLN-----SRKPNSVL 284 (490)
Q Consensus 220 ~s~~~l~~~~~~~~~~~--~~--------~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~v 284 (490)
.|-.. ....... ++ .++..+..-..... ... .........+.+-+. ..+++ .+
T Consensus 197 ~S~~~-----~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~-~~~-----~~~~~~~~~~r~~~~~~~~~~~~~~-~~ 264 (499)
T 2r60_A 197 STSQE-----RFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRV-FDG-----EYGDKIKAKITKYLERDLGSERMEL-PA 264 (499)
T ss_dssp SSHHH-----HHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTT-SSS-----CCCHHHHHHHHHHHHHHSCGGGTTS-CE
T ss_pred CCHHH-----HHHHHhhhcccccccccCCCCeEEECCCcChhh-cCc-----cchhhhHHHHHHHhcccccccCCCC-cE
Confidence 66321 2222221 11 34444442211100 000 000000011222111 11122 35
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHHcC-----CceEEEEccCCCC-CCchhh---h-ccCchhHHHhhc--cCCCceEeec
Q 044012 285 YICFGSLTRFSKEQTSEIAAALKESG-----HSFIWVVGKILKT-DDDQEE---E-SWLPDGFEDEVR--RNDRGFIIKG 352 (490)
Q Consensus 285 ~vs~GS~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~-~~~~~~---~-~~~p~~~~~~~~--~~~~nv~~~~ 352 (490)
++..|.+. +...+..+++|+..+. ...++.+|..... .++.++ . .+ -+.+.+.+. ...++|.+.+
T Consensus 265 i~~vGrl~--~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y-~~~l~~~~~~~~l~~~V~~~G 341 (499)
T 2r60_A 265 IIASSRLD--QKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEI-LGKIIELIDNNDCRGKVSMFP 341 (499)
T ss_dssp EEECSCCC--GGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHH-HHHHHHHHHHTTCBTTEEEEE
T ss_pred EEEeecCc--cccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHH-HHHHHHHHHhcCCCceEEECC
Confidence 56667653 3455777888887653 2245666652000 000000 0 00 001111111 0145799999
Q ss_pred cchh---HhhhccC----Cceeecc----cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccccccc
Q 044012 353 WAPQ---VLILEHQ----AIGGFLT----HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIW 421 (490)
Q Consensus 353 ~~p~---~~ll~~~----~~~~~It----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~ 421 (490)
++|+ ..+++.+ ++ +|. -|-..++.||+++|+|+|+... ......+ +.-..|+.++.
T Consensus 342 ~v~~~~~~~~~~~a~~~~dv--~v~pS~~Eg~~~~~lEAma~G~PvI~s~~----~g~~e~v-~~~~~g~l~~~------ 408 (499)
T 2r60_A 342 LNSQQELAGCYAYLASKGSV--FALTSFYEPFGLAPVEAMASGLPAVVTRN----GGPAEIL-DGGKYGVLVDP------ 408 (499)
T ss_dssp CCSHHHHHHHHHHHHHTTCE--EEECCSCBCCCSHHHHHHHTTCCEEEESS----BHHHHHT-GGGTSSEEECT------
T ss_pred CCCHHHHHHHHHhcCcCCCE--EEECcccCCCCcHHHHHHHcCCCEEEecC----CCHHHHh-cCCceEEEeCC------
Confidence 9975 4578888 88 663 2335689999999999998753 4455556 35457887754
Q ss_pred ccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 044012 422 ATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKE 461 (490)
Q Consensus 422 ~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~ 461 (490)
-+.+++.++|.++++ +.+....+.+++++..+
T Consensus 409 -------~d~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~ 440 (499)
T 2r60_A 409 -------EDPEDIARGLLKAFE-SEETWSAYQEKGKQRVE 440 (499)
T ss_dssp -------TCHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 378999999999998 43333344555544433
No 31
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.35 E-value=3.9e-11 Score=118.96 Aligned_cols=320 Identities=12% Similarity=0.053 Sum_probs=165.9
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhhhcccccCCCceEE-EEeeCCCCcCCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDSRLGREISL-RILRFPSQEAGLPEG 81 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~ 81 (490)
||||||+++. ++.....=+..|.++|.++ |+++.++.+....+.....+.. -++.. +.+. +...
T Consensus 25 m~~~kI~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~~-----~~i~~~~~l~-------v~~~ 91 (403)
T 3ot5_A 25 MAKIKVMSIF-GTRPEAIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEI-----FDIKPDIDLD-------IMKK 91 (403)
T ss_dssp -CCEEEEEEE-CSHHHHHHHHHHHHHHHTCTTTEEEEEEECC-----CHHHHHH-----TTCCCSEECC-------CCC-
T ss_pred cccceEEEEE-ecChhHHHHHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHHh-----cCCCCCcccc-------cCCC
Confidence 5667999888 6776777779999999988 6898777665432221111100 01110 0010 0000
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCC--C-cchHHHHHHhCCCeEEEecccHHHHHHHHhhh
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNL--F-PWTVSIAEELGIPRLAFTGSGFFNNCVSHSLE 158 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~--~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 158 (490)
. . . ...........+.+++++.+||+|++-.- . .++..+|..+|||.+.+...
T Consensus 92 ~------~--~----~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~ag------------ 147 (403)
T 3ot5_A 92 G------Q--T----LAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAG------------ 147 (403)
T ss_dssp C------C--C----HHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCC------------
T ss_pred C------C--C----HHHHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECC------------
Confidence 0 0 1 11223344567778888889999997432 2 24567899999997654110
Q ss_pred hcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHh-hh
Q 044012 159 HHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRR-VT 237 (490)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~-~~ 237 (490)
+... .+....+ .+..+.+.. +.++.++..+ +.....+.. ..
T Consensus 148 -------------------lrs~--~~~~~~p----------~~~~r~~~~--~~a~~~~~~s-----e~~~~~l~~~Gi 189 (403)
T 3ot5_A 148 -------------------LRTW--NKYSPFP----------EEMNRQLTG--VMADIHFSPT-----KQAKENLLAEGK 189 (403)
T ss_dssp -------------------CCCS--CTTSSTT----------HHHHHHHHH--HHCSEEEESS-----HHHHHHHHHTTC
T ss_pred -------------------cccc--ccccCCc----------HHHHHHHHH--HhcCEEECCC-----HHHHHHHHHcCC
Confidence 1000 0000000 111111111 1234445554 222222322 11
Q ss_pred -CCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHH-----cCC
Q 044012 238 -GKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKE-----SGH 311 (490)
Q Consensus 238 -~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-----~~~ 311 (490)
+.++..+|....+.... . ... ....+..+.+ +++++++++.|...... +.+..+++|+.+ .+.
T Consensus 190 ~~~~i~vvGn~~~D~~~~----~-~~~--~~~~~~~~~l---~~~~~vlv~~~r~~~~~-~~l~~ll~a~~~l~~~~~~~ 258 (403)
T 3ot5_A 190 DPATIFVTGNTAIDALKT----T-VQK--DYHHPILENL---GDNRLILMTAHRRENLG-EPMQGMFEAVREIVESREDT 258 (403)
T ss_dssp CGGGEEECCCHHHHHHHH----H-SCT--TCCCHHHHSC---TTCEEEEECCCCHHHHT-THHHHHHHHHHHHHHHCTTE
T ss_pred CcccEEEeCCchHHHHHh----h-hhh--hcchHHHHhc---cCCCEEEEEeCcccccC-cHHHHHHHHHHHHHHhCCCc
Confidence 24688888432211000 0 000 0011222222 34567777655322111 224566666654 245
Q ss_pred ceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccch---hHhhhccCCceeecccCChhHHHHHHHhCCcEe
Q 044012 312 SFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAP---QVLILEHQAIGGFLTHCGWNSILEGVSAGVPMV 388 (490)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p---~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l 388 (490)
++|+..+.+ . .... .+.+... ..+++.+.++++ ...+++.+++ +|+-.|..+ .||.++|+|+|
T Consensus 259 ~~v~~~~~~---~---~~~~----~l~~~~~-~~~~v~l~~~l~~~~~~~l~~~ad~--vv~~SGg~~-~EA~a~g~PvV 324 (403)
T 3ot5_A 259 ELVYPMHLN---P---AVRE----KAMAILG-GHERIHLIEPLDAIDFHNFLRKSYL--VFTDSGGVQ-EEAPGMGVPVL 324 (403)
T ss_dssp EEEEECCSC---H---HHHH----HHHHHHT-TCTTEEEECCCCHHHHHHHHHHEEE--EEECCHHHH-HHGGGTTCCEE
T ss_pred eEEEecCCC---H---HHHH----HHHHHhC-CCCCEEEeCCCCHHHHHHHHHhcCE--EEECCccHH-HHHHHhCCCEE
Confidence 666665433 1 1111 1111111 145899999885 4678889998 998775322 69999999999
Q ss_pred eccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 389 TWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 389 ~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
++|-.++++. ++ +.|.|+.+. .++++|.++|.++++
T Consensus 325 ~~~~~~~~~e----~v-~~g~~~lv~--------------~d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 325 VLRDTTERPE----GI-EAGTLKLIG--------------TNKENLIKEALDLLD 360 (403)
T ss_dssp ECCSSCSCHH----HH-HHTSEEECC--------------SCHHHHHHHHHHHHH
T ss_pred EecCCCcchh----he-eCCcEEEcC--------------CCHHHHHHHHHHHHc
Confidence 9976666543 33 668776652 378999999999998
No 32
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.33 E-value=1.6e-09 Score=108.53 Aligned_cols=376 Identities=13% Similarity=0.038 Sum_probs=179.6
Q ss_pred CcceEEEEcCC-----CCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh---------h--hcccccCCCceEEEEe
Q 044012 6 QKLHVMFLPYI-----APGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN---------A--IDRDSRLGREISLRIL 69 (490)
Q Consensus 6 ~~~~Il~~~~~-----~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~~~i 69 (490)
|+|||++++.. ..|--.-+..||++|+++||+|+++++......-.. . .........++.+..+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 57999999832 345555688999999999999999996432211000 0 0000000125666666
Q ss_pred eCCCCcCCCCCCccCCCCCC-Chhh-HhhHHHHHHhhHHHHHHHhh-cCCCcEEEEcCCCc--chHHHHHHhCCCeEEEe
Q 044012 70 RFPSQEAGLPEGCENLMSTS-TPET-TKKLFPALELLRPEIEKLFR-EQNPNCIVSDNLFP--WTVSIAEELGIPRLAFT 144 (490)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~l~-~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~ 144 (490)
+.+.. ....... .... ...+..........+..+++ ..+||+|.+..... .+..++...++|+|...
T Consensus 81 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~v~~~ 152 (439)
T 3fro_A 81 GGGLL--------DSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTI 152 (439)
T ss_dssp ESGGG--------GCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHHHCCCEEEEE
T ss_pred cchhc--------cccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhccCCCEEEEe
Confidence 52100 0000000 0011 11222222222333333332 56999999886443 25667788899988864
Q ss_pred cccHHHHHHHHhhhhcCCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhh
Q 044012 145 GSGFFNNCVSHSLEHHQPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYE 224 (490)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 224 (490)
...... ..+.. .+.. .....+..+ ... .......+.++.++..|-..
T Consensus 153 h~~~~~-------------------~~~~~--~~~~---~~~~~~~~~------~~~---~~~~~~~~~ad~ii~~S~~~ 199 (439)
T 3fro_A 153 HRLNKS-------------------KLPAF--YFHE---AGLSELAPY------PDI---DPEHTGGYIADIVTTVSRGY 199 (439)
T ss_dssp SCCCCC-------------------CEEHH--HHHH---TTCGGGCCS------SEE---CHHHHHHHHCSEEEESCHHH
T ss_pred cccccc-------------------cCchH--HhCc---ccccccccc------cee---eHhhhhhhhccEEEecCHHH
Confidence 432100 00000 0000 000000000 000 11122344567776666322
Q ss_pred cChHHHHHHHhhhCCceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHH
Q 044012 225 LEPAYADHFRRVTGKKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAA 304 (490)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~ 304 (490)
.+. ....+ .....++..+..-..... .... ............+.+-+... ++ .+++..|++.. +...+..+++
T Consensus 200 ~~~-~~~~~-~~~~~~i~vi~ngvd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~G~~~~-~~Kg~~~li~ 272 (439)
T 3fro_A 200 LID-EWGFF-RNFEGKITYVFNGIDCSF-WNES-YLTGSRDERKKSLLSKFGMD-EG-VTFMFIGRFDR-GQKGVDVLLK 272 (439)
T ss_dssp HHH-THHHH-GGGTTSEEECCCCCCTTT-SCGG-GSCSCHHHHHHHHHHHHTCC-SC-EEEEEECCSSC-TTBCHHHHHH
T ss_pred HHH-Hhhhh-hhcCCceeecCCCCCchh-cCcc-cccchhhhhHHHHHHHcCCC-CC-cEEEEEccccc-ccccHHHHHH
Confidence 221 11111 112355655543221110 0000 00000000112223333322 33 67777787751 1233445555
Q ss_pred HHHHc-------CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhH---hhhccCCceeecc----
Q 044012 305 ALKES-------GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQV---LILEHQAIGGFLT---- 370 (490)
Q Consensus 305 al~~~-------~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~~~~It---- 370 (490)
|+..+ +.++ +.+|.. .. ... +.+.+.....+.++.+.+|+|+. .++..+++ +|.
T Consensus 273 a~~~l~~~~~~~~~~l-~i~G~g---~~--~~~----~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv--~v~ps~~ 340 (439)
T 3fro_A 273 AIEILSSKKEFQEMRF-IIIGKG---DP--ELE----GWARSLEEKHGNVKVITEMLSREFVRELYGSVDF--VIIPSYF 340 (439)
T ss_dssp HHHHHHTSGGGGGEEE-EEECCC---CH--HHH----HHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSE--EEECBSC
T ss_pred HHHHHHhcccCCCeEE-EEEcCC---Ch--hHH----HHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCE--EEeCCCC
Confidence 55542 3343 344543 11 000 12222222224466778889874 47889998 662
Q ss_pred cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHH
Q 044012 371 HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAV 450 (490)
Q Consensus 371 HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~ 450 (490)
-|-.+++.||+++|+|+|+.. .......+ ..|.|..++. -+.+++.++|.++++++.+...
T Consensus 341 e~~~~~~~EAma~G~Pvi~s~----~~~~~e~~--~~~~g~~~~~-------------~d~~~la~~i~~ll~~~~~~~~ 401 (439)
T 3fro_A 341 EPFGLVALEAMCLGAIPIASA----VGGLRDII--TNETGILVKA-------------GDPGELANAILKALELSRSDLS 401 (439)
T ss_dssp CSSCHHHHHHHHTTCEEEEES----STHHHHHC--CTTTCEEECT-------------TCHHHHHHHHHHHHHHTTTTTH
T ss_pred CCccHHHHHHHHCCCCeEEcC----CCCcceeE--EcCceEEeCC-------------CCHHHHHHHHHHHHhcCHHHHH
Confidence 344579999999999999974 34455555 3468888764 3789999999999982222224
Q ss_pred HHHHHHHHHH
Q 044012 451 KMRKKANHLK 460 (490)
Q Consensus 451 ~~~~~a~~l~ 460 (490)
.+.+++++..
T Consensus 402 ~~~~~~~~~~ 411 (439)
T 3fro_A 402 KFRENCKKRA 411 (439)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 33
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.32 E-value=2.2e-11 Score=120.20 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=84.1
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHHc-----CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccc
Q 044012 280 PNSVLYICFGSLTRFSKEQTSEIAAALKES-----GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWA 354 (490)
Q Consensus 280 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~ 354 (490)
++++|+++.|...... +.+..+++|+.++ +.++++..+.. . +... .+.+.... .++|.+.+++
T Consensus 204 ~~~~vl~~~gr~~~~~-kg~~~li~a~~~l~~~~~~~~l~i~~g~~---~---~~~~----~l~~~~~~-~~~v~~~g~~ 271 (384)
T 1vgv_A 204 DKKMILVTGHRRESFG-RGFEEICHALADIATTHQDIQIVYPVHLN---P---NVRE----PVNRILGH-VKNVILIDPQ 271 (384)
T ss_dssp TSEEEEEECCCBSSCC-HHHHHHHHHHHHHHHHCTTEEEEEECCBC---H---HHHH----HHHHHHTT-CTTEEEECCC
T ss_pred CCCEEEEEeCCccccc-hHHHHHHHHHHHHHhhCCCeEEEEEcCCC---H---HHHH----HHHHHhhc-CCCEEEeCCC
Confidence 4567888888764322 3455666666542 45666543432 1 1111 12221111 3589986665
Q ss_pred h---hHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccch
Q 044012 355 P---QVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINR 431 (490)
Q Consensus 355 p---~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~ 431 (490)
+ ...+++.+++ ||+.+|. .+.||+++|+|+|+.+..++ ...++ ..|.|+.++ . ++
T Consensus 272 ~~~~~~~~~~~ad~--~v~~Sg~-~~lEA~a~G~PvI~~~~~~~----~~e~v-~~g~g~lv~-------------~-d~ 329 (384)
T 1vgv_A 272 EYLPFVWLMNHAWL--ILTDSGG-IQEEAPSLGKPVLVMRDTTE----RPEAV-TAGTVRLVG-------------T-DK 329 (384)
T ss_dssp CHHHHHHHHHHCSE--EEESSST-GGGTGGGGTCCEEEESSCCS----CHHHH-HHTSEEEEC-------------S-SH
T ss_pred CHHHHHHHHHhCcE--EEECCcc-hHHHHHHcCCCEEEccCCCC----cchhh-hCCceEEeC-------------C-CH
Confidence 5 4678999999 9998754 48899999999999987443 23343 567887773 2 78
Q ss_pred hHHHHHHHHHhc
Q 044012 432 GNIKNAICVVMD 443 (490)
Q Consensus 432 ~~l~~~i~~~l~ 443 (490)
++|.++|.++++
T Consensus 330 ~~la~~i~~ll~ 341 (384)
T 1vgv_A 330 QRIVEEVTRLLK 341 (384)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 34
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.30 E-value=1.7e-10 Score=113.09 Aligned_cols=148 Identities=14% Similarity=0.220 Sum_probs=96.0
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHHcCCc-----eEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh
Q 044012 282 SVLYICFGSLTRFSKEQTSEIAAALKESGHS-----FIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ 356 (490)
Q Consensus 282 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~-----~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~ 356 (490)
..+++..|+.. +...+..+++|+..+..+ -++.+|.. .. .++.. +..+.+ ..+++.+.++...
T Consensus 196 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g---~~-~~~~~-----~~~~~~-~~~~v~~~g~~~~ 263 (374)
T 2iw1_A 196 QNLLLQVGSDF--GRKGVDRSIEALASLPESLRHNTLLFVVGQD---KP-RKFEA-----LAEKLG-VRSNVHFFSGRND 263 (374)
T ss_dssp CEEEEEECSCT--TTTTHHHHHHHHHTSCHHHHHTEEEEEESSS---CC-HHHHH-----HHHHHT-CGGGEEEESCCSC
T ss_pred CeEEEEeccch--hhcCHHHHHHHHHHhHhccCCceEEEEEcCC---CH-HHHHH-----HHHHcC-CCCcEEECCCccc
Confidence 35666677654 334567778888875322 34555554 21 11111 111111 1358999888653
Q ss_pred -HhhhccCCceeecc----cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccch
Q 044012 357 -VLILEHQAIGGFLT----HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINR 431 (490)
Q Consensus 357 -~~ll~~~~~~~~It----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~ 431 (490)
..+++.+++ +|. -|..+++.||+++|+|+|+... ..+...+ +..+.|+.++. .-+.
T Consensus 264 ~~~~~~~ad~--~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~------------~~~~ 324 (374)
T 2iw1_A 264 VSELMAAADL--LLHPAYQEAAGIVLLEAITAGLPVLTTAV----CGYAHYI-ADANCGTVIAE------------PFSQ 324 (374)
T ss_dssp HHHHHHHCSE--EEECCSCCSSCHHHHHHHHHTCCEEEETT----STTTHHH-HHHTCEEEECS------------SCCH
T ss_pred HHHHHHhcCE--EEeccccCCcccHHHHHHHCCCCEEEecC----CCchhhh-ccCCceEEeCC------------CCCH
Confidence 668999998 775 5677899999999999999764 4566777 57788988862 2478
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 044012 432 GNIKNAICVVMDNDDQEAVKMRKKANHLKE 461 (490)
Q Consensus 432 ~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~ 461 (490)
+++.++|.++++ +.+....+.+++++..+
T Consensus 325 ~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~ 353 (374)
T 2iw1_A 325 EQLNEVLRKALT-QSPLRMAWAENARHYAD 353 (374)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-ChHHHHHHHHHHHHHHH
Confidence 999999999998 43333455555555444
No 35
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.29 E-value=2.3e-09 Score=105.97 Aligned_cols=332 Identities=12% Similarity=0.095 Sum_probs=172.8
Q ss_pred cceEEEEcCCC-CCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 7 KLHVMFLPYIA-PGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 7 ~~~Il~~~~~~-~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
++++....+|. .|.-.-...|+++|+++||+|++++....... .. ...++.+..++.+.. +. .
T Consensus 15 ~~~~~~~~~p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~-~~-------~~~~i~~~~~~~~~~----~~----~ 78 (394)
T 2jjm_A 15 KLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFRL-NK-------VYPNIYFHEVTVNQY----SV----F 78 (394)
T ss_dssp CCEEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSCC-----C-------CCTTEEEECCCCC------------C
T ss_pred eeeeehhcCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcc-cc-------cCCceEEEecccccc----cc----c
Confidence 36777777775 46667788999999999999999997532211 11 123566665542211 00 0
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcc--hHHHHH-Hh--CCCeEEEecccHHHHHHHHhhhhc
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPW--TVSIAE-EL--GIPRLAFTGSGFFNNCVSHSLEHH 160 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~--~~~~A~-~l--giP~v~~~~~~~~~~~~~~~~~~~ 160 (490)
... .. .+ .....+.+++++.+||+|++...... ...++. .+ ++|+|..........
T Consensus 79 ~~~---~~--~~-----~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~--------- 139 (394)
T 2jjm_A 79 QYP---PY--DL-----ALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITV--------- 139 (394)
T ss_dssp CSC---CH--HH-----HHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHT---------
T ss_pred ccc---cc--cH-----HHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccc---------
Confidence 000 00 00 12344566677789999998754332 233444 33 499877544321100
Q ss_pred CCCCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHhhhC--
Q 044012 161 QPFKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRRVTG-- 238 (490)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-- 238 (490)
.+.. .. +... .....+.++.++..+- .........++
T Consensus 140 ---------------~~~~-----------~~-------~~~~---~~~~~~~ad~ii~~s~-----~~~~~~~~~~~~~ 178 (394)
T 2jjm_A 140 ---------------LGSD-----------PS-------LNNL---IRFGIEQSDVVTAVSH-----SLINETHELVKPN 178 (394)
T ss_dssp ---------------TTTC-----------TT-------THHH---HHHHHHHSSEEEESCH-----HHHHHHHHHTCCS
T ss_pred ---------------cCCC-----------HH-------HHHH---HHHHHhhCCEEEECCH-----HHHHHHHHhhCCc
Confidence 0000 00 1111 1223456777776662 22223333222
Q ss_pred CceEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHc----CCceE
Q 044012 239 KKAWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKES----GHSFI 314 (490)
Q Consensus 239 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i 314 (490)
.++..+..-.....-. + .....+.+-+... ++..+++..|.+. ....+..+++|+..+ +.++
T Consensus 179 ~~~~vi~ngv~~~~~~--------~--~~~~~~~~~~~~~-~~~~~i~~~G~~~--~~Kg~~~li~a~~~l~~~~~~~l- 244 (394)
T 2jjm_A 179 KDIQTVYNFIDERVYF--------K--RDMTQLKKEYGIS-ESEKILIHISNFR--KVKRVQDVVQAFAKIVTEVDAKL- 244 (394)
T ss_dssp SCEEECCCCCCTTTCC--------C--CCCHHHHHHTTCC----CEEEEECCCC--GGGTHHHHHHHHHHHHHSSCCEE-
T ss_pred ccEEEecCCccHHhcC--------C--cchHHHHHHcCCC-CCCeEEEEeeccc--cccCHHHHHHHHHHHHhhCCCEE-
Confidence 4566665322211100 0 0011222222211 1223555567764 234455566666553 4444
Q ss_pred EEEccCCCCCCchhhhccCchhHHHhhcc--CCCceEeeccch-hHhhhccCCceeec----ccCChhHHHHHHHhCCcE
Q 044012 315 WVVGKILKTDDDQEEESWLPDGFEDEVRR--NDRGFIIKGWAP-QVLILEHQAIGGFL----THCGWNSILEGVSAGVPM 387 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~nv~~~~~~p-~~~ll~~~~~~~~I----tHGG~~s~~eal~~GvP~ 387 (490)
+.+|.. .... .+.+.... ..++|.+.++.. ...++..+++ +| ..|..+++.||+++|+|+
T Consensus 245 ~i~G~g---~~~~--------~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~Pv 311 (394)
T 2jjm_A 245 LLVGDG---PEFC--------TILQLVKNLHIEDRVLFLGKQDNVAELLAMSDL--MLLLSEKESFGLVLLEAMACGVPC 311 (394)
T ss_dssp EEECCC---TTHH--------HHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSE--EEECCSCCSCCHHHHHHHHTTCCE
T ss_pred EEECCc---hHHH--------HHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCE--EEeccccCCCchHHHHHHhcCCCE
Confidence 444544 2111 12222111 135788888765 3679999999 77 567778999999999999
Q ss_pred eeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 044012 388 VTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLK 460 (490)
Q Consensus 388 l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~ 460 (490)
|+.+.. .....+ +.-+.|+..+. -+.+++.++|.++++ +.+....+.+++++..
T Consensus 312 I~~~~~----~~~e~v-~~~~~g~~~~~-------------~d~~~la~~i~~l~~-~~~~~~~~~~~~~~~~ 365 (394)
T 2jjm_A 312 IGTRVG----GIPEVI-QHGDTGYLCEV-------------GDTTGVADQAIQLLK-DEELHRNMGERARESV 365 (394)
T ss_dssp EEECCT----TSTTTC-CBTTTEEEECT-------------TCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHH
T ss_pred EEecCC----ChHHHh-hcCCceEEeCC-------------CCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 998643 334444 34456777754 378999999999998 4333334555554443
No 36
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.23 E-value=9.2e-10 Score=106.67 Aligned_cols=125 Identities=13% Similarity=0.117 Sum_probs=83.1
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhH---hhh
Q 044012 284 LYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQV---LIL 360 (490)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~---~ll 360 (490)
+++..|++. +.+....+++|++.++.+++++ |.. .....++ .+..+. .++|.+.+|+++. .++
T Consensus 164 ~i~~vG~~~--~~Kg~~~li~a~~~~~~~l~i~-G~g---~~~~~l~-----~~~~~~---~~~v~~~g~~~~~~l~~~~ 229 (342)
T 2iuy_A 164 FLLFMGRVS--PHKGALEAAAFAHACGRRLVLA-GPA---WEPEYFD-----EITRRY---GSTVEPIGEVGGERRLDLL 229 (342)
T ss_dssp CEEEESCCC--GGGTHHHHHHHHHHHTCCEEEE-SCC---CCHHHHH-----HHHHHH---TTTEEECCCCCHHHHHHHH
T ss_pred EEEEEeccc--cccCHHHHHHHHHhcCcEEEEE-eCc---ccHHHHH-----HHHHHh---CCCEEEeccCCHHHHHHHH
Confidence 344456654 4456778888888887776554 544 2111111 111122 3689999999864 789
Q ss_pred ccCCceeec--c------------cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHh--hccceeeccccccccccC
Q 044012 361 EHQAIGGFL--T------------HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQV--LKFGLPVGNEIWKIWATQ 424 (490)
Q Consensus 361 ~~~~~~~~I--t------------HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~--~G~G~~l~~~~~~~~~~~ 424 (490)
..+++ +| + -|-.+++.||+++|+|+|+... ..+...+ +. -+.|+.. .
T Consensus 230 ~~adv--~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~----~~~~e~~-~~~~~~~g~~~--~-------- 292 (342)
T 2iuy_A 230 ASAHA--VLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGN----GCLAEIV-PSVGEVVGYGT--D-------- 292 (342)
T ss_dssp HHCSE--EEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCT----TTHHHHG-GGGEEECCSSS--C--------
T ss_pred HhCCE--EEECCcccccccccccccCccHHHHHHHhcCCCEEEcCC----CChHHHh-cccCCCceEEc--C--------
Confidence 99999 66 2 2335689999999999999865 3456666 45 3456555 2
Q ss_pred CCCccchhHHHHHHHHHhc
Q 044012 425 DSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 425 ~~~~~t~~~l~~~i~~~l~ 443 (490)
. +.+++.++|.++++
T Consensus 293 ---~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 293 ---F-APDEARRTLAGLPA 307 (342)
T ss_dssp ---C-CHHHHHHHHHTSCC
T ss_pred ---C-CHHHHHHHHHHHHH
Confidence 5 88999999999874
No 37
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.19 E-value=1e-08 Score=102.09 Aligned_cols=92 Identities=12% Similarity=0.031 Sum_probs=64.1
Q ss_pred CCceEeeccch------hHhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeec
Q 044012 345 DRGFIIKGWAP------QVLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVG 414 (490)
Q Consensus 345 ~~nv~~~~~~p------~~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~ 414 (490)
.++|.+.+|++ ...+++.+++ +|.- |..+++.||+++|+|+|+.+. ..+...+ +.-+.|+..
T Consensus 292 ~~~V~~~G~~~~~~~~~~~~~~~~ad~--~v~ps~~E~~~~~~lEAma~G~PvI~~~~----~g~~e~i-~~~~~g~l~- 363 (416)
T 2x6q_A 292 DYDVKVLTNLIGVHAREVNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAV----GGIKFQI-VDGETGFLV- 363 (416)
T ss_dssp CTTEEEEEGGGTCCHHHHHHHHHHCSE--EEECCSSCSSCHHHHHHHHTTCCEEEESC----HHHHHHC-CBTTTEEEE-
T ss_pred CCcEEEecccCCCCHHHHHHHHHhCCE--EEECCCcCCCccHHHHHHHcCCCEEEccC----CCChhhe-ecCCCeEEE-
Confidence 46899998876 3457888998 6643 356789999999999999764 3455555 455567666
Q ss_pred cccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044012 415 NEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHL 459 (490)
Q Consensus 415 ~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l 459 (490)
. +.+++.++|.++++ +.+....+.+++++.
T Consensus 364 -------------~-d~~~la~~i~~ll~-~~~~~~~~~~~a~~~ 393 (416)
T 2x6q_A 364 -------------R-DANEAVEVVLYLLK-HPEVSKEMGAKAKER 393 (416)
T ss_dssp -------------S-SHHHHHHHHHHHHH-CHHHHHHHHHHHHHH
T ss_pred -------------C-CHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 3 67899999999998 433223444444433
No 38
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.19 E-value=4.1e-09 Score=103.32 Aligned_cols=130 Identities=12% Similarity=0.041 Sum_probs=80.6
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHHc-----CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccc
Q 044012 280 PNSVLYICFGSLTRFSKEQTSEIAAALKES-----GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWA 354 (490)
Q Consensus 280 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~ 354 (490)
++++++++.|...... +.+..+++|+.++ +.++++ +.. .. .++.. ...+... ..+++.+.+++
T Consensus 204 ~~~~vl~~~gr~~~~~-K~~~~li~a~~~l~~~~~~~~~i~--~~g---~~-~~~~~----~~~~~~~-~~~~v~~~g~~ 271 (375)
T 3beo_A 204 NNRLVLMTAHRRENLG-EPMRNMFRAIKRLVDKHEDVQVVY--PVH---MN-PVVRE----TANDILG-DYGRIHLIEPL 271 (375)
T ss_dssp TSEEEEEECCCGGGTT-HHHHHHHHHHHHHHHHCTTEEEEE--ECC---SC-HHHHH----HHHHHHT-TCTTEEEECCC
T ss_pred CCCeEEEEecccccch-hHHHHHHHHHHHHHhhCCCeEEEE--eCC---CC-HHHHH----HHHHHhh-ccCCEEEeCCC
Confidence 4556777777654221 3466677777653 345443 322 11 01111 1111111 13589997766
Q ss_pred h---hHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccch
Q 044012 355 P---QVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINR 431 (490)
Q Consensus 355 p---~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~ 431 (490)
+ ...+++.+++ +|+..| +.+.||+++|+|+|+....+.. ..+. ..|.|+.++ . +.
T Consensus 272 ~~~~~~~~~~~ad~--~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~----~e~v-~~g~g~~v~-------------~-d~ 329 (375)
T 3beo_A 272 DVIDFHNVAARSYL--MLTDSG-GVQEEAPSLGVPVLVLRDTTER----PEGI-EAGTLKLAG-------------T-DE 329 (375)
T ss_dssp CHHHHHHHHHTCSE--EEECCH-HHHHHHHHHTCCEEECSSCCSC----HHHH-HTTSEEECC-------------S-CH
T ss_pred CHHHHHHHHHhCcE--EEECCC-ChHHHHHhcCCCEEEecCCCCC----ceee-cCCceEEcC-------------C-CH
Confidence 5 4568899999 898763 5588999999999998543332 2343 567777663 2 78
Q ss_pred hHHHHHHHHHhc
Q 044012 432 GNIKNAICVVMD 443 (490)
Q Consensus 432 ~~l~~~i~~~l~ 443 (490)
++|.++|.++++
T Consensus 330 ~~la~~i~~ll~ 341 (375)
T 3beo_A 330 ETIFSLADELLS 341 (375)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 39
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.17 E-value=7.3e-10 Score=108.86 Aligned_cols=319 Identities=11% Similarity=0.064 Sum_probs=173.4
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchh-hhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNAR-RFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
-|+|++++. |++-.+.=+.+|.++|.++ +++.++.+....+ .+...... +|. |+.|... +..
T Consensus 8 ~~~~~~~v~-GtRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~~------~~~---i~~~~~~--l~~---- 70 (385)
T 4hwg_A 8 HMLKVMTIV-GTRPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFFD------DMG---IRKPDYF--LEV---- 70 (385)
T ss_dssp CCCEEEEEE-CSHHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHHC-------CC---CCCCSEE--CCC----
T ss_pred hhhheeEEE-EcCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHHh------hCC---CCCCcee--cCC----
Confidence 467888776 8888888888999999877 9988888766544 33332111 111 1111100 010
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcC--CCcchHHHHHHhCCCeEEEecccHHHHHHHHhhhhcCC
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDN--LFPWTVSIAEELGIPRLAFTGSGFFNNCVSHSLEHHQP 162 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~--~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 162 (490)
.+. . ...........+.+++++.+||+|++-. ...++..+|..+|||.+.+...
T Consensus 71 -~~~---~----~~~~~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eag---------------- 126 (385)
T 4hwg_A 71 -AAD---N----TAKSIGLVIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAG---------------- 126 (385)
T ss_dssp -CCC---C----SHHHHHHHHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEEEESCC----------------
T ss_pred -CCC---C----HHHHHHHHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEEEEeCC----------------
Confidence 111 1 1223334456777888888999998633 3445588999999997654110
Q ss_pred CCCCCCCCceeecCCCCCCcccCCCCCCCccccCCCchhhHHHHHHHhhhcccEEEEcchhhcChHHHHHHHh-hh-CCc
Q 044012 163 FKNIVSETQKFIVPGLPDQVKLSRSQLPDIVKCKSTGFSAMFDELNNAERKSFGVLMNSFYELEPAYADHFRR-VT-GKK 240 (490)
Q Consensus 163 ~~~~~~~~~~~~~p~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~-~~-~~~ 240 (490)
+.. .. ...+ .+..+.+.. +-++.++..+ +.....+.. .. +.+
T Consensus 127 ---------------lrs---~~-~~~p----------ee~nR~~~~--~~a~~~~~~t-----e~~~~~l~~~G~~~~~ 170 (385)
T 4hwg_A 127 ---------------NRC---FD-QRVP----------EEINRKIID--HISDVNITLT-----EHARRYLIAEGLPAEL 170 (385)
T ss_dssp ---------------CCC---SC-TTST----------HHHHHHHHH--HHCSEEEESS-----HHHHHHHHHTTCCGGG
T ss_pred ---------------Ccc---cc-ccCc----------HHHHHHHHH--hhhceeecCC-----HHHHHHHHHcCCCcCc
Confidence 100 00 0000 011111111 1234444444 222222222 12 246
Q ss_pred eEEeccccCCCCCCcchhccCCCCccCccccccccCCCCCCeEEEEEeCCcccC-CHHHHHHHHHHHHHc----CCceEE
Q 044012 241 AWHLGPVSLYNRDVDDKAERGDKSCVSKHSCLSWLNSRKPNSVLYICFGSLTRF-SKEQTSEIAAALKES----GHSFIW 315 (490)
Q Consensus 241 ~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~-~~~~~~~~~~al~~~----~~~~i~ 315 (490)
+..+|-...+...... ......++.+.+.-. ++++|+++.|..... ..+.+..+++|+.++ +.++|+
T Consensus 171 I~vtGnp~~D~~~~~~-------~~~~~~~~~~~lgl~-~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~ 242 (385)
T 4hwg_A 171 TFKSGSHMPEVLDRFM-------PKILKSDILDKLSLT-PKQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIF 242 (385)
T ss_dssp EEECCCSHHHHHHHHH-------HHHHHCCHHHHTTCC-TTSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCchHHHHHHhh-------hhcchhHHHHHcCCC-cCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 8888842221100000 000012333334332 255888888765332 235567777887763 567777
Q ss_pred EEccCCCCCCchhhhccCchhHHHh---hccCCCceEeeccc---hhHhhhccCCceeecccCChhHHHHHHHhCCcEee
Q 044012 316 VVGKILKTDDDQEEESWLPDGFEDE---VRRNDRGFIIKGWA---PQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVT 389 (490)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~nv~~~~~~---p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~ 389 (490)
..+.. ... .+.+. .. ..+|+.+.+.+ +...+++++++ +||-.|. .+.||.+.|+|+|.
T Consensus 243 p~~p~--------~~~----~l~~~~~~~~-~~~~v~l~~~lg~~~~~~l~~~adl--vvt~SGg-v~~EA~alG~Pvv~ 306 (385)
T 4hwg_A 243 STHPR--------TKK----RLEDLEGFKE-LGDKIRFLPAFSFTDYVKLQMNAFC--ILSDSGT-ITEEASILNLPALN 306 (385)
T ss_dssp EECHH--------HHH----HHHTSGGGGG-TGGGEEECCCCCHHHHHHHHHHCSE--EEECCTT-HHHHHHHTTCCEEE
T ss_pred ECChH--------HHH----HHHHHHHHhc-CCCCEEEEcCCCHHHHHHHHHhCcE--EEECCcc-HHHHHHHcCCCEEE
Confidence 65422 111 11111 10 13478886555 45679999999 9998775 46899999999999
Q ss_pred ccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhcc
Q 044012 390 WPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDN 444 (490)
Q Consensus 390 ~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n 444 (490)
++...+.+. .+ +.|.++.+ ..++++|.+++.++|+|
T Consensus 307 ~~~~ter~e---~v--~~G~~~lv--------------~~d~~~i~~ai~~ll~d 342 (385)
T 4hwg_A 307 IREAHERPE---GM--DAGTLIMS--------------GFKAERVLQAVKTITEE 342 (385)
T ss_dssp CSSSCSCTH---HH--HHTCCEEC--------------CSSHHHHHHHHHHHHTT
T ss_pred cCCCccchh---hh--hcCceEEc--------------CCCHHHHHHHHHHHHhC
Confidence 987554222 23 56777655 24789999999999983
No 40
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=98.91 E-value=3.2e-07 Score=93.19 Aligned_cols=127 Identities=17% Similarity=0.110 Sum_probs=78.6
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHH---cCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceE-eeccchh--H
Q 044012 284 LYICFGSLTRFSKEQTSEIAAALKE---SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFI-IKGWAPQ--V 357 (490)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~-~~~~~p~--~ 357 (490)
+++..|.+.. ...+..+++|+.. .+.+++++ |.. .. ... +.+.+......+++. +.++... .
T Consensus 293 ~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~l~iv-G~g---~~--~~~----~~l~~~~~~~~~~v~~~~g~~~~~~~ 360 (485)
T 1rzu_A 293 LFCVISRLTW--QKGIDLMAEAVDEIVSLGGRLVVL-GAG---DV--ALE----GALLAAASRHHGRVGVAIGYNEPLSH 360 (485)
T ss_dssp EEEEESCBST--TTTHHHHHTTHHHHHHTTCEEEEE-ECB---CH--HHH----HHHHHHHHHTTTTEEEEESCCHHHHH
T ss_pred EEEEEccCcc--ccCHHHHHHHHHHHHhcCceEEEE-eCC---ch--HHH----HHHHHHHHhCCCcEEEecCCCHHHHH
Confidence 6666787653 3445556666554 35665555 433 10 011 122222222245786 6788433 3
Q ss_pred hhhccCCceeecc----cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhh---------ccceeeccccccccccC
Q 044012 358 LILEHQAIGGFLT----HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVL---------KFGLPVGNEIWKIWATQ 424 (490)
Q Consensus 358 ~ll~~~~~~~~It----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~---------G~G~~l~~~~~~~~~~~ 424 (490)
.+++.+++ +|. -|-..++.||+++|+|+|+... ......+ +.- +.|+.++.
T Consensus 361 ~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----gg~~e~v-~~~~~~~~~~~~~~G~l~~~--------- 424 (485)
T 1rzu_A 361 LMQAGCDA--IIIPSRFEPCGLTQLYALRYGCIPVVART----GGLADTV-IDANHAALASKAATGVQFSP--------- 424 (485)
T ss_dssp HHHHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHC-CBCCHHHHHTTCCCBEEESS---------
T ss_pred HHHhcCCE--EEECcccCCCCHHHHHHHHCCCCEEEeCC----CChhhee-cccccccccccCCcceEeCC---------
Confidence 68999998 662 3445689999999999999754 3444445 333 57877754
Q ss_pred CCCccchhHHHHHHHHHh
Q 044012 425 DSPVINRGNIKNAICVVM 442 (490)
Q Consensus 425 ~~~~~t~~~l~~~i~~~l 442 (490)
-+.++|+++|.+++
T Consensus 425 ----~d~~~la~~i~~ll 438 (485)
T 1rzu_A 425 ----VTLDGLKQAIRRTV 438 (485)
T ss_dssp ----CSHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHH
Confidence 37899999999999
No 41
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=98.86 E-value=7.4e-07 Score=90.50 Aligned_cols=128 Identities=16% Similarity=0.075 Sum_probs=78.4
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHHc---CCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceE-eeccchh--
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKES---GHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFI-IKGWAPQ-- 356 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~-~~~~~p~-- 356 (490)
.+++..|.+. +...+..+++|+..+ +.+++++-.+. . +.. +.+.+......+++. +.++...
T Consensus 293 ~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~~~l~ivG~g~---~---~~~----~~l~~~~~~~~~~v~~~~g~~~~~~ 360 (485)
T 2qzs_A 293 PLFAVVSRLT--SQKGLDLVLEALPGLLEQGGQLALLGAGD---P---VLQ----EGFLAAAAEYPGQVGVQIGYHEAFS 360 (485)
T ss_dssp CEEEEEEEES--GGGCHHHHHHHHHHHHHTTCEEEEEEEEC---H---HHH----HHHHHHHHHSTTTEEEEESCCHHHH
T ss_pred eEEEEeccCc--cccCHHHHHHHHHHHhhCCcEEEEEeCCc---h---HHH----HHHHHHHHhCCCcEEEeCCCCHHHH
Confidence 3555566654 334456666666653 56655543322 0 011 122222221235775 7778443
Q ss_pred HhhhccCCceeecc----cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhh---------ccceeecccccccccc
Q 044012 357 VLILEHQAIGGFLT----HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVL---------KFGLPVGNEIWKIWAT 423 (490)
Q Consensus 357 ~~ll~~~~~~~~It----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~---------G~G~~l~~~~~~~~~~ 423 (490)
..+++.+++ +|. -|...++.||+++|+|+|+... ......+ +.- +.|+.++.
T Consensus 361 ~~~~~~adv--~v~pS~~E~~g~~~lEAma~G~PvI~s~~----gg~~e~v-~~~~~~~~~~~~~~G~l~~~-------- 425 (485)
T 2qzs_A 361 HRIMGGADV--ILVPSRFEPCGLTQLYGLKYGTLPLVRRT----GGLADTV-SDCSLENLADGVASGFVFED-------- 425 (485)
T ss_dssp HHHHHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHC-CBCCHHHHHTTCCCBEEECS--------
T ss_pred HHHHHhCCE--EEECCccCCCcHHHHHHHHCCCCEEECCC----CCcccee-ccCccccccccccceEEECC--------
Confidence 368999998 662 3445689999999999999754 3444545 333 57877754
Q ss_pred CCCCccchhHHHHHHHHHh
Q 044012 424 QDSPVINRGNIKNAICVVM 442 (490)
Q Consensus 424 ~~~~~~t~~~l~~~i~~~l 442 (490)
-+.++|+++|.+++
T Consensus 426 -----~d~~~la~~i~~ll 439 (485)
T 2qzs_A 426 -----SNAWSLLRAIRRAF 439 (485)
T ss_dssp -----SSHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHH
Confidence 37899999999999
No 42
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.79 E-value=2.2e-06 Score=91.31 Aligned_cols=148 Identities=11% Similarity=0.146 Sum_probs=84.5
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHHcC-----CceEEEEccCCCCCC-----chhhhccCchhHHHhhc--cCCCceEe
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKESG-----HSFIWVVGKILKTDD-----DQEEESWLPDGFEDEVR--RNDRGFII 350 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~-----~~~~~~~~p~~~~~~~~--~~~~nv~~ 350 (490)
.+++..|.+. +.+.+..+++|+.++. .+++ .+|.. .+ ..+... . +.+...++ ...++|.+
T Consensus 573 ~vIl~vGRl~--~~KGid~LIeA~~~L~~~~~~v~Lv-IvG~g---~~~~~~~~e~~~~-~-~~L~~li~~lgL~~~V~f 644 (816)
T 3s28_A 573 PILFTMARLD--RVKNLSGLVEWYGKNTRLRELANLV-VVGGD---RRKESKDNEEKAE-M-KKMYDLIEEYKLNGQFRW 644 (816)
T ss_dssp CEEEEECCCC--TTTTHHHHHHHHHHCHHHHHHCEEE-EECCC---TTSCCCCHHHHHH-H-HHHHHHHHHTTCBBBEEE
T ss_pred eEEEEEccCc--ccCCHHHHHHHHHHHHhhCCCeEEE-EEeCC---CcccccchhhHHH-H-HHHHHHHHHcCCCCcEEE
Confidence 3556667654 3456777777777643 4444 44544 20 000000 0 01111111 01357888
Q ss_pred ec----cchhHhhhc----cCCceeecc----cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccc
Q 044012 351 KG----WAPQVLILE----HQAIGGFLT----HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIW 418 (490)
Q Consensus 351 ~~----~~p~~~ll~----~~~~~~~It----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 418 (490)
.+ ++|+.++.. .+++ ||. -|-..++.||+++|+|+|+. |-......+ +.-+.|+.++..
T Consensus 645 lG~~~~~v~~~eL~~~~~~aaDv--fV~PS~~EgfglvllEAMA~G~PVIas----d~GG~~EiV-~dg~~Gllv~p~-- 715 (816)
T 3s28_A 645 ISSQMDRVRNGELYRYICDTKGA--FVQPALYEAFGLTVVEAMTCGLPTFAT----CKGGPAEII-VHGKSGFHIDPY-- 715 (816)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCE--EEECCSCBSSCHHHHHHHHTTCCEEEE----SSBTHHHHC-CBTTTBEEECTT--
T ss_pred ccCccccCCHHHHHHHHHhcCeE--EEECCCccCccHHHHHHHHcCCCEEEe----CCCChHHHH-ccCCcEEEeCCC--
Confidence 87 455555544 4566 663 34456999999999999996 455566666 465678887653
Q ss_pred cccccCCCCccchhHHHHHHHHHh----ccCcHHHHHHHHHHHHH
Q 044012 419 KIWATQDSPVINRGNIKNAICVVM----DNDDQEAVKMRKKANHL 459 (490)
Q Consensus 419 ~~~~~~~~~~~t~~~l~~~i~~~l----~n~~~~~~~~~~~a~~l 459 (490)
+.++++++|.+++ + +.+....+.+++++.
T Consensus 716 -----------D~e~LA~aI~~lL~~Ll~-d~~~~~~m~~~ar~~ 748 (816)
T 3s28_A 716 -----------HGDQAADTLADFFTKCKE-DPSHWDEISKGGLQR 748 (816)
T ss_dssp -----------SHHHHHHHHHHHHHHHHH-CTHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Confidence 7888999997766 6 433333444444443
No 43
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.65 E-value=3.1e-06 Score=83.85 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=52.2
Q ss_pred eEeeccchh---HhhhccCCceeec----ccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhcc-----------
Q 044012 348 FIIKGWAPQ---VLILEHQAIGGFL----THCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKF----------- 409 (490)
Q Consensus 348 v~~~~~~p~---~~ll~~~~~~~~I----tHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~----------- 409 (490)
+.+.+|+|+ ..+++.+++ +| .-|...++.||+++|+|+|+.... .....+ ..|.
T Consensus 256 v~~~g~~~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~~----g~~e~v--~~~~~~~i~~~~~~~ 327 (413)
T 3oy2_A 256 MINRTVLTDERVDMMYNACDV--IVNCSSGEGFGLCSAEGAVLGKPLIISAVG----GADDYF--SGDCVYKIKPSAWIS 327 (413)
T ss_dssp EEECSCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHTTTCCEEEECCH----HHHHHS--CTTTSEEECCCEEEE
T ss_pred eeccCcCCHHHHHHHHHhCCE--EEeCCCcCCCCcHHHHHHHcCCCEEEcCCC----ChHHHH--ccCcccccccccccc
Confidence 777899984 457889998 66 334456899999999999996532 333333 2222
Q ss_pred -----ce--eeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 410 -----GL--PVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 410 -----G~--~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
|+ .+.. -+.+++.++| ++++
T Consensus 328 ~~~~~G~~gl~~~-------------~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 328 VDDRDGIGGIEGI-------------IDVDDLVEAF-TFFK 354 (413)
T ss_dssp CTTTCSSCCEEEE-------------CCHHHHHHHH-HHTT
T ss_pred cccccCcceeeCC-------------CCHHHHHHHH-HHhc
Confidence 44 4432 4899999999 9998
No 44
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=0.00024 Score=73.46 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=58.2
Q ss_pred CceEeeccchh---HhhhccCCceeec---ccCChhHHHHHHHhCCcEeeccCcccccch-HHHHHHhhccceeeccccc
Q 044012 346 RGFIIKGWAPQ---VLILEHQAIGGFL---THCGWNSILEGVSAGVPMVTWPVFAEQFNN-EKLVTQVLKFGLPVGNEIW 418 (490)
Q Consensus 346 ~nv~~~~~~p~---~~ll~~~~~~~~I---tHGG~~s~~eal~~GvP~l~~P~~~DQ~~n-a~rv~e~~G~G~~l~~~~~ 418 (490)
++|++.+++|+ ..++..+++ || ..|+.+++.||+++|+|+|++|-..=..+. +..+ +..|+...+.
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l-~~~g~~e~v~---- 506 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADL--FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLN-HHLGLDEMNV---- 506 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHH-HHHTCGGGBC----
T ss_pred hHEEeeCCCCHHHHHHHHhcCCE--EeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHH-HHCCChhhhc----
Confidence 68999999974 457889998 65 237778999999999999998743211122 2334 3556554441
Q ss_pred cccccCCCCccchhHHHHHHHHHhc
Q 044012 419 KIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 419 ~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
-+.+++.++|.++++
T Consensus 507 ----------~~~~~la~~i~~l~~ 521 (568)
T 2vsy_A 507 ----------ADDAAFVAKAVALAS 521 (568)
T ss_dssp ----------SSHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHhc
Confidence 278999999999998
No 45
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.51 E-value=3.5e-05 Score=75.26 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=69.3
Q ss_pred ceEeeccch-hHhhhccCCceeecc-----cCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccc
Q 044012 347 GFIIKGWAP-QVLILEHQAIGGFLT-----HCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKI 420 (490)
Q Consensus 347 nv~~~~~~p-~~~ll~~~~~~~~It-----HGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~ 420 (490)
++.+.++.. -..+++.+++ ++. -+|..++.||+++|+|+|+-|..++.......+ ...|.++.. .
T Consensus 261 ~v~~~~~~~dl~~~y~~aDv--~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~-~~~G~l~~~--~---- 331 (374)
T 2xci_A 261 DVILVDRFGILKELYPVGKI--AIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFL-EKEGAGFEV--K---- 331 (374)
T ss_dssp SEEECCSSSCHHHHGGGEEE--EEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHH-HHTTCEEEC--C----
T ss_pred cEEEECCHHHHHHHHHhCCE--EEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHH-HHCCCEEEe--C----
Confidence 566666543 4668888887 553 124478999999999999877666666666555 355655443 2
Q ss_pred cccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 044012 421 WATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAK 464 (490)
Q Consensus 421 ~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~ 464 (490)
+.++|.++|.++++ | +....|.+++++..++-.
T Consensus 332 ---------d~~~La~ai~~ll~-d-~~r~~mg~~ar~~~~~~~ 364 (374)
T 2xci_A 332 ---------NETELVTKLTELLS-V-KKEIKVEEKSREIKGCYL 364 (374)
T ss_dssp ---------SHHHHHHHHHHHHH-S-CCCCCHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHh-H-HHHHHHHHHHHHHHHhcc
Confidence 57899999999998 4 433578888888776644
No 46
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.37 E-value=2.5e-06 Score=73.95 Aligned_cols=130 Identities=14% Similarity=0.097 Sum_probs=85.9
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHHc-CCceEEEEccCCCCCCchhhhccCchhHHH-hhccCCCceEeeccchh---Hh
Q 044012 284 LYICFGSLTRFSKEQTSEIAAALKES-GHSFIWVVGKILKTDDDQEEESWLPDGFED-EVRRNDRGFIIKGWAPQ---VL 358 (490)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~nv~~~~~~p~---~~ 358 (490)
+++..|++. ....+..+++++..+ +.+++++ |.. .....+.. .... .. ..++|+.+.+|+++ ..
T Consensus 25 ~i~~~G~~~--~~Kg~~~li~a~~~l~~~~l~i~-G~~---~~~~~l~~----~~~~~~~-~l~~~v~~~g~~~~~e~~~ 93 (177)
T 2f9f_A 25 FWLSVNRIY--PEKRIELQLEVFKKLQDEKLYIV-GWF---SKGDHAER----YARKIMK-IAPDNVKFLGSVSEEELID 93 (177)
T ss_dssp CEEEECCSS--GGGTHHHHHHHHHHCTTSCEEEE-BCC---CTTSTHHH----HHHHHHH-HSCTTEEEEESCCHHHHHH
T ss_pred EEEEEeccc--cccCHHHHHHHHHhCCCcEEEEE-ecC---ccHHHHHH----HHHhhhc-ccCCcEEEeCCCCHHHHHH
Confidence 445567654 345677888888886 5565554 444 21111111 1110 10 01558999999986 66
Q ss_pred hhccCCceeecc---c-CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHH
Q 044012 359 ILEHQAIGGFLT---H-CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNI 434 (490)
Q Consensus 359 ll~~~~~~~~It---H-GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l 434 (490)
++..+++ +|. + |...++.||+++|+|+|+... ..+...+ +..+.|+.+ . -+.+++
T Consensus 94 ~~~~adi--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i-~~~~~g~~~-~-------------~d~~~l 152 (177)
T 2f9f_A 94 LYSRCKG--LLCTAKDEDFGLTPIEAMASGKPVIAVNE----GGFKETV-INEKTGYLV-N-------------ADVNEI 152 (177)
T ss_dssp HHHHCSE--EEECCSSCCSCHHHHHHHHTTCCEEEESS----HHHHHHC-CBTTTEEEE-C-------------SCHHHH
T ss_pred HHHhCCE--EEeCCCcCCCChHHHHHHHcCCcEEEeCC----CCHHHHh-cCCCccEEe-C-------------CCHHHH
Confidence 8999998 665 2 344599999999999999753 4555666 455678777 3 378999
Q ss_pred HHHHHHHhccC
Q 044012 435 KNAICVVMDND 445 (490)
Q Consensus 435 ~~~i~~~l~n~ 445 (490)
.++|.++++|+
T Consensus 153 ~~~i~~l~~~~ 163 (177)
T 2f9f_A 153 IDAMKKVSKNP 163 (177)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCH
Confidence 99999999844
No 47
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.34 E-value=5.7e-05 Score=74.64 Aligned_cols=75 Identities=13% Similarity=-0.001 Sum_probs=57.2
Q ss_pred CCceEeeccchhH---hhhccCCceeecc----cCChhHHHHHH-------HhCCcEeeccCcccccchHHHHHHhhccc
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLT----HCGWNSILEGV-------SAGVPMVTWPVFAEQFNNEKLVTQVLKFG 410 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~It----HGG~~s~~eal-------~~GvP~l~~P~~~DQ~~na~rv~e~~G~G 410 (490)
.+||.+.+++|+. .+++.+++ +|. -|-.+++.||+ ++|+|+|+... + +.-..|
T Consensus 264 ~~~V~f~G~~~~~~l~~~~~~adv--~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v-~~~~~G 330 (406)
T 2hy7_A 264 GDNVIVYGEMKHAQTIGYIKHARF--GIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------V-VGPYKS 330 (406)
T ss_dssp CTTEEEECCCCHHHHHHHHHTCSE--EECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------G-TCSCSS
T ss_pred CCCEEEcCCCCHHHHHHHHHhcCE--EEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------c-ccCcce
Confidence 5689999999854 57889998 653 23446789999 99999999865 5 354557
Q ss_pred ee-eccccccccccCCCCccchhHHHHHHHHHhccC
Q 044012 411 LP-VGNEIWKIWATQDSPVINRGNIKNAICVVMDND 445 (490)
Q Consensus 411 ~~-l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~ 445 (490)
.. ++. -+.++|+++|.++++|+
T Consensus 331 ~l~v~~-------------~d~~~la~ai~~ll~~~ 353 (406)
T 2hy7_A 331 RFGYTP-------------GNADSVIAAITQALEAP 353 (406)
T ss_dssp EEEECT-------------TCHHHHHHHHHHHHHCC
T ss_pred EEEeCC-------------CCHHHHHHHHHHHHhCc
Confidence 76 654 37899999999999843
No 48
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=98.16 E-value=0.00018 Score=71.10 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=56.4
Q ss_pred CCceEeeccchhH---hhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeecccc
Q 044012 345 DRGFIIKGWAPQV---LILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEI 417 (490)
Q Consensus 345 ~~nv~~~~~~p~~---~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~ 417 (490)
..++.+.+++|+. .+++.+++ ||.- |=..++.||+++|+|+|+ -..+ ....+ +.-..|+.++.
T Consensus 294 ~~~v~f~G~~~~~~l~~~~~~adv--~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g----~~e~v-~~~~~G~lv~~-- 363 (413)
T 2x0d_A 294 GIHLNSLGKLTLEDYADLLKRSSI--GISLMISPHPSYPPLEMAHFGLRVIT-NKYE----NKDLS-NWHSNIVSLEQ-- 363 (413)
T ss_dssp TEEEEEEESCCHHHHHHHHHHCCE--EECCCSSSSCCSHHHHHHHTTCEEEE-ECBT----TBCGG-GTBTTEEEESS--
T ss_pred cCcEEEcCCCCHHHHHHHHHhCCE--EEEecCCCCCCcHHHHHHhCCCcEEE-eCCC----cchhh-hcCCCEEEeCC--
Confidence 4479999999754 57889998 6642 223578999999999998 3222 22334 34345776754
Q ss_pred ccccccCCCCccchhHHHHHHHHHhccC
Q 044012 418 WKIWATQDSPVINRGNIKNAICVVMDND 445 (490)
Q Consensus 418 ~~~~~~~~~~~~t~~~l~~~i~~~l~n~ 445 (490)
-++++|+++|.++++|+
T Consensus 364 -----------~d~~~la~ai~~ll~~~ 380 (413)
T 2x0d_A 364 -----------LNPENIAETLVELCMSF 380 (413)
T ss_dssp -----------CSHHHHHHHHHHHHHHT
T ss_pred -----------CCHHHHHHHHHHHHcCH
Confidence 47899999999999844
No 49
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=98.07 E-value=4.6e-05 Score=64.80 Aligned_cols=146 Identities=13% Similarity=0.134 Sum_probs=87.1
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHHcCC--ce-EEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh--
Q 044012 282 SVLYICFGSLTRFSKEQTSEIAAALKESGH--SF-IWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ-- 356 (490)
Q Consensus 282 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~--~~-i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~-- 356 (490)
+++++..|.+. +...+..+++|+..+.. .+ ++.+|.. .... .+.........++.+ +|+|+
T Consensus 2 ~~~i~~~G~~~--~~Kg~~~li~a~~~l~~~~~~~l~i~G~g---~~~~--------~~~~~~~~~~~~v~~-g~~~~~~ 67 (166)
T 3qhp_A 2 PFKIAMVGRYS--NEKNQSVLIKAVALSKYKQDIVLLLKGKG---PDEK--------KIKLLAQKLGVKAEF-GFVNSNE 67 (166)
T ss_dssp CEEEEEESCCS--TTTTHHHHHHHHHTCTTGGGEEEEEECCS---TTHH--------HHHHHHHHHTCEEEC-CCCCHHH
T ss_pred ceEEEEEeccc--hhcCHHHHHHHHHHhccCCCeEEEEEeCC---ccHH--------HHHHHHHHcCCeEEE-eecCHHH
Confidence 45777778764 34567778888887531 22 3334543 2111 222222111337888 99985
Q ss_pred -HhhhccCCceeecc----cCChhHHHHHHHhCC-cEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccc
Q 044012 357 -VLILEHQAIGGFLT----HCGWNSILEGVSAGV-PMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVIN 430 (490)
Q Consensus 357 -~~ll~~~~~~~~It----HGG~~s~~eal~~Gv-P~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t 430 (490)
..++..+++ +|. -|...++.||+++|+ |+|+... .......+ +..|. .+. .-+
T Consensus 68 ~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~vPvi~~~~---~~~~~~~~-~~~~~--~~~-------------~~~ 126 (166)
T 3qhp_A 68 LLEILKTCTL--YVHAANVESEAIACLEAISVGIVPVIANSP---LSATRQFA-LDERS--LFE-------------PNN 126 (166)
T ss_dssp HHHHHTTCSE--EEECCCSCCCCHHHHHHHHTTCCEEEECCT---TCGGGGGC-SSGGG--EEC-------------TTC
T ss_pred HHHHHHhCCE--EEECCcccCccHHHHHHHhcCCCcEEeeCC---CCchhhhc-cCCce--EEc-------------CCC
Confidence 357889998 664 344569999999996 9999432 22222233 22222 232 347
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 044012 431 RGNIKNAICVVMDNDDQEAVKMRKKANHLKELA 463 (490)
Q Consensus 431 ~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~ 463 (490)
.+++.++|.++++ +.+....+.+++++..+++
T Consensus 127 ~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~ 158 (166)
T 3qhp_A 127 AKDLSAKIDWWLE-NKLERERMQNEYAKSALNY 158 (166)
T ss_dssp HHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHC
Confidence 8999999999998 4444456666666655443
No 50
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=97.97 E-value=0.00074 Score=69.05 Aligned_cols=138 Identities=13% Similarity=0.033 Sum_probs=74.5
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHH---cCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchh---H
Q 044012 284 LYICFGSLTRFSKEQTSEIAAALKE---SGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQ---V 357 (490)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~---~ 357 (490)
+++..|.+. +.+.+..+++|+.+ .+.++++...+. . ... ..+.......+.++.+..+.+. .
T Consensus 329 ~i~~vgRl~--~~Kg~~~li~a~~~l~~~~~~l~l~G~G~---~---~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~ 396 (536)
T 3vue_A 329 LIAFIGRLE--EQKGPDVMAAAIPELMQEDVQIVLLGTGK---K---KFE----KLLKSMEEKYPGKVRAVVKFNAPLAH 396 (536)
T ss_dssp EEEEECCBS--GGGCHHHHHHHHHHHTTSSCEEEEECCBC---H---HHH----HHHHHHHHHSTTTEEEECSCCHHHHH
T ss_pred EEEEEeecc--ccCChHHHHHHHHHhHhhCCeEEEEeccC---c---hHH----HHHHHHHhhcCCceEEEEeccHHHHH
Confidence 344456553 34557777777776 355665554332 1 111 1122222222567887777664 3
Q ss_pred hhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhH
Q 044012 358 LILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGN 433 (490)
Q Consensus 358 ~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~ 433 (490)
.+++.+++ ||.= |=..++.||+++|+|+|+-.. ......| +.-.-|........ .+..=...+.++
T Consensus 397 ~~~~~aD~--~v~PS~~E~fgl~~lEAma~G~PvI~s~~----gG~~e~V-~dg~~G~~~~~~~~---~g~l~~~~d~~~ 466 (536)
T 3vue_A 397 LIMAGADV--LAVPSRFEPCGLIQLQGMRYGTPCACAST----GGLVDTV-IEGKTGFHMGRLSV---DCKVVEPSDVKK 466 (536)
T ss_dssp HHHHHCSE--EEECCSCCSSCSHHHHHHHTTCCEEECSC----THHHHHC-CBTTTEEECCCCCS---CTTCCCHHHHHH
T ss_pred HHHHhhhe--eecccccCCCCHHHHHHHHcCCCEEEcCC----CCchhee-eCCCCccccccCCC---ceeEECCCCHHH
Confidence 47888888 6642 233589999999999998654 3333444 23223332221100 000001346788
Q ss_pred HHHHHHHHhc
Q 044012 434 IKNAICVVMD 443 (490)
Q Consensus 434 l~~~i~~~l~ 443 (490)
|.++|+++++
T Consensus 467 la~ai~ral~ 476 (536)
T 3vue_A 467 VAATLKRAIK 476 (536)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998775
No 51
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.71 E-value=0.0017 Score=62.51 Aligned_cols=107 Identities=8% Similarity=0.090 Sum_probs=75.0
Q ss_pred CCCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhhhcccccCCCceE-EEEeeCCCCcCCCCC
Q 044012 4 ENQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDSRLGREIS-LRILRFPSQEAGLPE 80 (490)
Q Consensus 4 ~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 80 (490)
..+++||+++-..+.|++.-..++.++|+++ +.+|++++.+.+.+.++.. ..++ ++.++. .
T Consensus 5 ~l~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~--------~ 68 (349)
T 3tov_A 5 ELDYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYN--------PNIDELIVVDK--------K 68 (349)
T ss_dssp CCTTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSC--------TTCSEEEEECC--------S
T ss_pred CCCCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC--------CCccEEEEeCc--------c
Confidence 3567899999999999999999999999988 9999999999888887765 1332 444420 0
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCC-cEEEEcCCCcchHHHHHHhCCCeEE
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNP-NCIVSDNLFPWTVSIAEELGIPRLA 142 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~p-D~VI~D~~~~~~~~~A~~lgiP~v~ 142 (490)
.....+. ....+...|++.++ |++|.-....-...++...|+|..+
T Consensus 69 -----------~~~~~~~-----~~~~l~~~Lr~~~y~D~vidl~~~~rs~~l~~~~~a~~ri 115 (349)
T 3tov_A 69 -----------GRHNSIS-----GLNEVAREINAKGKTDIVINLHPNERTSYLAWKIHAPITT 115 (349)
T ss_dssp -----------SHHHHHH-----HHHHHHHHHHHHCCCCEEEECCCSHHHHHHHHHHCCSEEE
T ss_pred -----------cccccHH-----HHHHHHHHHhhCCCCeEEEECCCChHHHHHHHHhCCCeEE
Confidence 0000010 01233445666689 9999665555566788889999755
No 52
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.61 E-value=0.0061 Score=58.43 Aligned_cols=103 Identities=12% Similarity=0.085 Sum_probs=69.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhhhcccccCCCce-EEEEeeCCCCcCCCCCCccC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNAIDRDSRLGREI-SLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~ 84 (490)
|||+++...+.|++.-...+.++|+++ +.+|++++.+.+.+.++.. + .+ +++.++. ...
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l~~~~-------p-~i~~v~~~~~-------~~~--- 62 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRM-------P-EVNEAIPMPL-------GHG--- 62 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTC-------T-TEEEEEEC---------------
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC-------C-ccCEEEEecC-------Ccc---
Confidence 689999988889999999999999987 9999999998877776554 1 23 2333320 000
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEE
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLA 142 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~ 142 (490)
. ..+ .....+...+++.+||+||.-....-...++...|+|...
T Consensus 63 -------~--~~~-----~~~~~l~~~l~~~~~D~vid~~~~~~sa~~~~~~~~~~~i 106 (348)
T 1psw_A 63 -------A--LEI-----GERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRT 106 (348)
T ss_dssp -----------CH-----HHHHHHHHHTTTTTCSEEEECSCCSGGGHHHHHTTCSEEE
T ss_pred -------c--cch-----HHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHhCCCEEe
Confidence 0 000 1123455667778999999332334456678888999744
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.49 E-value=0.0035 Score=66.45 Aligned_cols=140 Identities=17% Similarity=0.173 Sum_probs=91.3
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHH-hhccCCCceEeeccchhH
Q 044012 279 KPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFED-EVRRNDRGFIIKGWAPQV 357 (490)
Q Consensus 279 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~nv~~~~~~p~~ 357 (490)
++..+||.||.......++.+..-++-|++.+--+||..... .. .+..+-..+.. .++ ++.+++.+..|..
T Consensus 520 p~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~---~~---~~~~l~~~~~~~gi~--~~r~~f~~~~~~~ 591 (723)
T 4gyw_A 520 PEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFP---AV---GEPNIQQYAQNMGLP--QNRIIFSPVAPKE 591 (723)
T ss_dssp CTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETT---GG---GHHHHHHHHHHTTCC--GGGEEEEECCCHH
T ss_pred CCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCc---HH---HHHHHHHHHHhcCCC--cCeEEECCCCCHH
Confidence 356799999999888999999999999999888888888765 21 00001111111 123 5578888888754
Q ss_pred h---hhccCCceeecc---cCChhHHHHHHHhCCcEeeccCcc-cccchHHHHHHhhccceeeccccccccccCCCCccc
Q 044012 358 L---ILEHQAIGGFLT---HCGWNSILEGVSAGVPMVTWPVFA-EQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVIN 430 (490)
Q Consensus 358 ~---ll~~~~~~~~It---HGG~~s~~eal~~GvP~l~~P~~~-DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t 430 (490)
+ .+..+|+ ++- .+|.+|++|||+.|||+|.++-.. =...-+..+ ...|+...+ .-+
T Consensus 592 ~~l~~~~~~Di--~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l-~~~gl~e~i--------------a~~ 654 (723)
T 4gyw_A 592 EHVRRGQLADV--CLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQL-TCLGCLELI--------------AKN 654 (723)
T ss_dssp HHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHH-HHHTCGGGB--------------CSS
T ss_pred HHHHHhCCCeE--EeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHH-HHcCCcccc--------------cCC
Confidence 4 5566776 654 789999999999999999998321 112223334 355555433 345
Q ss_pred hhHHHHHHHHHhc
Q 044012 431 RGNIKNAICVVMD 443 (490)
Q Consensus 431 ~~~l~~~i~~~l~ 443 (490)
.++-.+.-.++-+
T Consensus 655 ~~~Y~~~a~~la~ 667 (723)
T 4gyw_A 655 RQEYEDIAVKLGT 667 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555655
No 54
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.44 E-value=0.0035 Score=54.63 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=62.5
Q ss_pred ceEe-eccchh---HhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccc
Q 044012 347 GFII-KGWAPQ---VLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIW 418 (490)
Q Consensus 347 nv~~-~~~~p~---~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~ 418 (490)
++.+ .+++++ ..++..+++ +|.- |...++.||+++|+|+|+.... .....+ ..+.|..++.
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad~--~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~e~~--~~~~g~~~~~--- 164 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAVG----GLRDII--TNETGILVKA--- 164 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSE--EEECCSCCSSCHHHHHHHHTTCEEEEESCH----HHHHHC--CTTTCEEECT---
T ss_pred CEEEEeccCCHHHHHHHHHHCCE--EEECCCCCCccHHHHHHHHCCCCEEEeCCC----ChHHHc--CCCceEEecC---
Confidence 8999 999984 468889998 6632 3356899999999999987542 222222 2355666643
Q ss_pred cccccCCCCccchhHHHHHHHHHhc-cCcHHHHHHHHHHHHHH
Q 044012 419 KIWATQDSPVINRGNIKNAICVVMD-NDDQEAVKMRKKANHLK 460 (490)
Q Consensus 419 ~~~~~~~~~~~t~~~l~~~i~~~l~-n~~~~~~~~~~~a~~l~ 460 (490)
-+.+++.++|.++++ |+ +....+.+++++..
T Consensus 165 ----------~~~~~l~~~i~~l~~~~~-~~~~~~~~~a~~~~ 196 (200)
T 2bfw_A 165 ----------GDPGELANAILKALELSR-SDLSKFRENCKKRA 196 (200)
T ss_dssp ----------TCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH
Confidence 378999999999987 54 22234555554443
No 55
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=97.31 E-value=0.00082 Score=64.30 Aligned_cols=111 Identities=13% Similarity=0.143 Sum_probs=82.6
Q ss_pred ceEeeccchhHhh---hccCCceeecccCCh---------hHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeec
Q 044012 347 GFIIKGWAPQVLI---LEHQAIGGFLTHCGW---------NSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVG 414 (490)
Q Consensus 347 nv~~~~~~p~~~l---l~~~~~~~~ItHGG~---------~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~ 414 (490)
||.+.+|+|+.++ |..++..++.+-+.+ +-+.|++++|+|+|+.+ ...++..+ ++.|+|+..+
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~----~~~~~~~v-~~~~~G~~~~ 289 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE----GIANQELI-ENNGLGWIVK 289 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEET----TCTTTHHH-HHHTCEEEES
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEcc----ChhHHHHH-HhCCeEEEeC
Confidence 9999999998665 545566555433333 35889999999999754 56788888 6999999883
Q ss_pred cccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 044012 415 NEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDI 484 (490)
Q Consensus 415 ~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 484 (490)
+.+++.++|.++.. ++...|++|+++.+++++ .|......+.+.+.++
T Consensus 290 ---------------~~~e~~~~i~~l~~---~~~~~m~~na~~~a~~~~----~~~f~k~~l~~~~~~~ 337 (339)
T 3rhz_A 290 ---------------DVEEAIMKVKNVNE---DEYIELVKNVRSFNPILR----KGFFTRRLLTESVFQA 337 (339)
T ss_dssp ---------------SHHHHHHHHHHCCH---HHHHHHHHHHHHHTHHHH----TTHHHHHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHh
Confidence 35788999988753 344799999999999987 5666666666666554
No 56
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=97.24 E-value=0.0048 Score=62.99 Aligned_cols=136 Identities=10% Similarity=0.023 Sum_probs=86.8
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEE--EccCCCCCCchhhhccCchhHH-HhhccCCCceEeeccchhH
Q 044012 281 NSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWV--VGKILKTDDDQEEESWLPDGFE-DEVRRNDRGFIIKGWAPQV 357 (490)
Q Consensus 281 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~--~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~nv~~~~~~p~~ 357 (490)
..++|.+|+......++.+....+-+++.+..++|. .+.. . .....+-..+. ..+ .+.+.+.+.+|+.
T Consensus 440 G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~---~---g~~~~~~~~~~~~GI---~~Rv~F~g~~p~~ 510 (631)
T 3q3e_A 440 EVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQS---N---GITHPYVERFIKSYL---GDSATAHPHSPYH 510 (631)
T ss_dssp SEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSC---C---GGGHHHHHHHHHHHH---GGGEEEECCCCHH
T ss_pred CeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCC---c---hhhHHHHHHHHHcCC---CccEEEcCCCCHH
Confidence 468999999888888899888888888887777764 3422 1 00000000111 112 2367888888865
Q ss_pred h---hhccCCceeec---ccCChhHHHHHHHhCCcEeeccCcccccchHHHHH----HhhccceeeccccccccccCCCC
Q 044012 358 L---ILEHQAIGGFL---THCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVT----QVLKFGLPVGNEIWKIWATQDSP 427 (490)
Q Consensus 358 ~---ll~~~~~~~~I---tHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~----e~~G~G~~l~~~~~~~~~~~~~~ 427 (490)
+ .+..+|+ |+ ..+|.+|+.||+++|||+|.++- + ..+.|+. ...|+...+ .
T Consensus 511 e~la~y~~aDI--fLDpfpy~GgtTtlEALwmGVPVVTl~G--~--~~asRvgaSlL~~~GLpE~L-I------------ 571 (631)
T 3q3e_A 511 QYLRILHNCDM--MVNPFPFGNTNGIIDMVTLGLVGVCKTG--A--EVHEHIDEGLFKRLGLPEWL-I------------ 571 (631)
T ss_dssp HHHHHHHTCSE--EECCSSSCCSHHHHHHHHTTCCEEEECC--S--SHHHHHHHHHHHHTTCCGGG-E------------
T ss_pred HHHHHHhcCcE--EEeCCcccCChHHHHHHHcCCCEEeccC--C--cHHHHhHHHHHHhcCCCcce-e------------
Confidence 4 5578887 54 34788999999999999999873 2 2333331 133443211 1
Q ss_pred ccchhHHHHHHHHHhccC
Q 044012 428 VINRGNIKNAICVVMDND 445 (490)
Q Consensus 428 ~~t~~~l~~~i~~~l~n~ 445 (490)
.-+.++..++..++.+ |
T Consensus 572 A~d~eeYv~~Av~La~-D 588 (631)
T 3q3e_A 572 ANTVDEYVERAVRLAE-N 588 (631)
T ss_dssp ESSHHHHHHHHHHHHH-C
T ss_pred cCCHHHHHHHHHHHhC-C
Confidence 2467888888888888 5
No 57
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=96.98 E-value=0.041 Score=52.09 Aligned_cols=46 Identities=11% Similarity=0.071 Sum_probs=42.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~ 53 (490)
|||+++-..+.|++.-...+.++|+++ +.+|++++.+.+.+.++..
T Consensus 1 ~~ILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (326)
T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWH 48 (326)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTHHHHTS
T ss_pred CeEEEEeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhhHHHhcC
Confidence 689999999999999999999999988 9999999999888887665
No 58
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=94.76 E-value=0.13 Score=46.08 Aligned_cols=115 Identities=12% Similarity=0.140 Sum_probs=68.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
|||||+..=-+. |---+.+|+++|.+.| +|+++.+...++-....+.. ...+++..+... . . ...+
T Consensus 1 ~M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~sit~----~~pl~~~~~~~~-----~--~-~~v~ 66 (251)
T 2phj_A 1 MPTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSLTF----TEPLKMRKIDTD-----F--Y-TVID 66 (251)
T ss_dssp -CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCC----SSCEEEEEEETT-----E--E-EETT
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhcC-CEEEEecCCCccCCccceec----CCCeEEEEecCC-----C--e-EEEC
Confidence 589988875554 3344889999999988 99999998877766654322 224555554310 0 0 1111
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEE----------cCCCc---chHHHHHHhCCCeEEEecc
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVS----------DNLFP---WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~----------D~~~~---~~~~~A~~lgiP~v~~~~~ 146 (490)
..-..|-. -.+..++...+||+||+ |.++. +|+.-|..+|||.|.++..
T Consensus 67 ---------GTPaDCV~--lal~~l~~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (251)
T 2phj_A 67 ---------GTPADCVH--LGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp ---------CCHHHHHH--HHHHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ---------CCHHHHHH--HHHHHhcCCCCCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEcC
Confidence 11122211 13344454458999996 32333 3456677889999998653
No 59
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=94.66 E-value=0.19 Score=45.29 Aligned_cols=114 Identities=12% Similarity=0.138 Sum_probs=67.1
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLM 86 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (490)
|+|||+.-=-+. +---+.+|+++|.+.| +|+++.+...++-....+.. ...+++..+... .....+
T Consensus 1 Mp~ILlTNDDGi-~apGi~~L~~~l~~~g-~V~VvAP~~~~Sg~g~siT~----~~pl~~~~~~~~--------~~~~v~ 66 (251)
T 2wqk_A 1 MPTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSLTF----TEPLKMRKIDTD--------FYTVID 66 (251)
T ss_dssp -CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCC----SSCEEEEEEETT--------EEEETT
T ss_pred CCEEEEEcCCCC-CcHHHHHHHHHHHhCC-CEEEEeeCCCCcccccCcCC----CCCceeEEeecc--------ceeecC
Confidence 578888764443 2233788999999998 59999988777665544221 123444444311 000011
Q ss_pred CCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEE----------cCCCc---chHHHHHHhCCCeEEEec
Q 044012 87 STSTPETTKKLFPALELLRPEIEKLFREQNPNCIVS----------DNLFP---WTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~----------D~~~~---~~~~~A~~lgiP~v~~~~ 145 (490)
..-..|-. -.+..++.+.+||+||+ |.++. +|+.=|..+|||.|.++-
T Consensus 67 ---------GTPaDCV~--lal~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~ 127 (251)
T 2wqk_A 67 ---------GTPADCVH--LGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp ---------CCHHHHHH--HHHHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ---------CChHHHHh--hhhhhhcCCCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEc
Confidence 11222221 13445566779999997 33333 456677888999999864
No 60
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=93.54 E-value=0.86 Score=40.02 Aligned_cols=104 Identities=6% Similarity=0.113 Sum_probs=61.5
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCC--eEEEEeCCc-ch---hhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGI--QVTIILTTM-NA---RRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh--~Vt~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
|+||+|+..++. ..+.++.++|.+.+| +|..+.+.. .. +..++. ++.+..++ +.
T Consensus 1 m~rI~vl~SG~g---~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~~~---------gIp~~~~~--------~~ 60 (216)
T 2ywr_A 1 MLKIGVLVSGRG---SNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKH---------NVECKVIQ--------RK 60 (216)
T ss_dssp CEEEEEEECSCC---HHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHH---------TCCEEECC--------GG
T ss_pred CCEEEEEEeCCc---HHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHHHc---------CCCEEEeC--------cc
Confidence 479999976654 347778888888888 776555432 22 233333 55555442 11
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEecc
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (490)
.. . ..+...+++.+.|++.++|+||+-.+. .-...+-+.....++-++++
T Consensus 61 ~~---~-------------~r~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 111 (216)
T 2ywr_A 61 EF---P-------------SKKEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPS 111 (216)
T ss_dssp GS---S-------------SHHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHTTSTTCEEEEESS
T ss_pred cc---c-------------chhhhhHHHHHHHHhcCCCEEEEeCchhhCCHHHHhhccCCeEEEcCC
Confidence 10 0 011234567788888999999987653 34444555555566666444
No 61
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=92.98 E-value=0.93 Score=40.15 Aligned_cols=106 Identities=8% Similarity=0.058 Sum_probs=64.2
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCc-ch---hhhhhhhcccccCCCceEEEEeeCCCCcCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTM-NA---RRFQNAIDRDSRLGREISLRILRFPSQEAGL 78 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 78 (490)
.+||||+|+..++. ..+.++.++|.+. +++|..+.+.. .. +..++. ++.+..++
T Consensus 20 ~~~~rI~~l~SG~g---~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~---------gIp~~~~~-------- 79 (229)
T 3auf_A 20 GHMIRIGVLISGSG---TNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRA---------GVDALHMD-------- 79 (229)
T ss_dssp TTCEEEEEEESSCC---HHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHT---------TCEEEECC--------
T ss_pred CCCcEEEEEEeCCc---HHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHc---------CCCEEEEC--------
Confidence 45789999976664 2467788888876 68887666542 22 223333 56665543
Q ss_pred CCCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEecc
Q 044012 79 PEGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (490)
+....+ -+...+++.+.|++.+||+||+-.+. .-...+-+.+...++-+.++
T Consensus 80 ~~~~~~----------------r~~~~~~~~~~l~~~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpS 132 (229)
T 3auf_A 80 PAAYPS----------------RTAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPS 132 (229)
T ss_dssp GGGSSS----------------HHHHHHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHSTTCEEEEESS
T ss_pred cccccc----------------hhhccHHHHHHHHhcCCCEEEEcChhHhCCHHHHhhccCCEEEEccC
Confidence 111100 01334567788888999999987653 34555556666666766443
No 62
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=91.97 E-value=1.3 Score=38.68 Aligned_cols=104 Identities=8% Similarity=0.064 Sum_probs=62.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCc-ch---hhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTM-NA---RRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
|+||+++-.++.+ .+.++.++|.+. +|+|..+.+.. .. +..++. ++.+..++ +.
T Consensus 3 m~ki~vl~sG~g~---~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~---------gIp~~~~~--------~~ 62 (212)
T 3av3_A 3 MKRLAVFASGSGT---NFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARE---------NVPAFVFS--------PK 62 (212)
T ss_dssp CEEEEEECCSSCH---HHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHT---------TCCEEECC--------GG
T ss_pred CcEEEEEEECCcH---HHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHc---------CCCEEEeC--------cc
Confidence 5789888766643 466777888877 78998776542 22 223333 55555442 11
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEecc
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (490)
.. . .-+...+++.+.+++.+||+||+-.+. .-...+-+.....++-++++
T Consensus 63 ~~---~-------------~~~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 113 (212)
T 3av3_A 63 DY---P-------------SKAAFESEILRELKGRQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPS 113 (212)
T ss_dssp GS---S-------------SHHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHHHTTTCEEEEESS
T ss_pred cc---c-------------chhhhHHHHHHHHHhcCCCEEEEchhhhhCCHHHHhhhcCCEEEEecC
Confidence 10 0 011234567788888999999987653 34555556666667766443
No 63
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=91.81 E-value=1.1 Score=41.79 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=28.4
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
++||||+|+..+..+ ....++|.++||+|..+.+..
T Consensus 2 ~~mmrIvf~Gtp~fa-----~~~L~~L~~~~~~v~~Vvt~p 37 (317)
T 3rfo_A 2 NAMIKVVFMGTPDFS-----VPVLRRLIEDGYDVIGVVTQP 37 (317)
T ss_dssp CTTSEEEEECCSTTH-----HHHHHHHHHTTCEEEEEECCC
T ss_pred CCceEEEEEeCCHHH-----HHHHHHHHHCCCcEEEEEeCC
Confidence 578999999988654 355678888899999887743
No 64
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=90.87 E-value=1.4 Score=41.49 Aligned_cols=103 Identities=8% Similarity=-0.001 Sum_probs=58.5
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc--------chhhhhhhhcccccCCCceEEEEeeCCCCcC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM--------NARRFQNAIDRDSRLGREISLRILRFPSQEA 76 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 76 (490)
+.+|||+|+. --+....+.++|.++||+|..+.+.. ..+...+. ++.+...+
T Consensus 20 ~~~mrIvf~G-----~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~~~~v~~~A~~~---------gIpv~~~~------ 79 (329)
T 2bw0_A 20 FQSMKIAVIG-----QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKD---------GVPVFKYS------ 79 (329)
T ss_dssp -CCCEEEEEC-----CHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHH---------TCCEEECS------
T ss_pred CCCCEEEEEc-----CcHHHHHHHHHHHHCCCeEEEEEeCCCcCCCCCHHHHHHHHc---------CCCEEecC------
Confidence 3458999993 22334457899999999998777521 12222222 44444332
Q ss_pred CCCCCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEeccc
Q 044012 77 GLPEGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~~~ 147 (490)
.+ .. . ....+++.+.+++.++|++|+-.+.- -...+-+.....++-++++.
T Consensus 80 ~~----~~-~---------------~~~~~~~~~~l~~~~~Dliv~a~y~~ilp~~il~~~~~g~iNiHpSL 131 (329)
T 2bw0_A 80 RW----RA-K---------------GQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSL 131 (329)
T ss_dssp CC----EE-T---------------TEECHHHHHHHHTTCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSC
T ss_pred cc----cc-c---------------ccccHHHHHHHHhcCCCEEEEeehhhhCCHHHHhhCcCCEEEEcCCc
Confidence 00 00 0 01124566778888999999876533 34444455566677776653
No 65
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=90.56 E-value=2.3 Score=39.72 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=25.7
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|++|||+|+..+. ......++|.++||+|..+.+.
T Consensus 5 ~~~mrivf~Gt~~-----fa~~~L~~L~~~~~~v~~Vvt~ 39 (318)
T 3q0i_A 5 SQSLRIVFAGTPD-----FAARHLAALLSSEHEIIAVYTQ 39 (318)
T ss_dssp --CCEEEEECCSH-----HHHHHHHHHHTSSSEEEEEECC
T ss_pred ccCCEEEEEecCH-----HHHHHHHHHHHCCCcEEEEEcC
Confidence 4679999998763 3345678888899999877764
No 66
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=89.17 E-value=4.5 Score=35.24 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=62.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCc-ch---hhhhhhhcccccCCCceEEEEeeCCCCcCCCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTM-NA---RRFQNAIDRDSRLGREISLRILRFPSQEAGLPEG 81 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (490)
+||+++..+..+ .+.+|.+++.+. +|+|..+.+.. .. +..++. ++.+..++ +..
T Consensus 1 ~ri~vl~Sg~gs---nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~---------gIp~~~~~--------~~~ 60 (212)
T 1jkx_A 1 MNIVVLISGNGS---NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQA---------GIATHTLI--------ASA 60 (212)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHT---------TCEEEECC--------GGG
T ss_pred CEEEEEEECCcH---HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHc---------CCcEEEeC--------ccc
Confidence 488888866554 467777887766 68987766543 22 223333 56665542 111
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEecc
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (490)
.. ..+...+++.+.|++.+||+||+-.+. .-...+-+.....++-++++
T Consensus 61 ~~----------------~r~~~~~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 110 (212)
T 1jkx_A 61 FD----------------SREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPS 110 (212)
T ss_dssp CS----------------SHHHHHHHHHHHHGGGCCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred cc----------------chhhccHHHHHHHHhcCCCEEEEeChhhhCCHHHHhhccCCEEEEccC
Confidence 00 012334577788899999999987653 34555556666677766444
No 67
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=88.11 E-value=5.3 Score=32.22 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=22.2
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
|.+..+++||+++- .+-.-...|.+.|.+.|++|..+.
T Consensus 1 M~~~~~~~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~ 38 (154)
T 3gt7_A 1 MSLSNRAGEILIVE----DSPTQAEHLKHILEETGYQTEHVR 38 (154)
T ss_dssp ------CCEEEEEC----SCHHHHHHHHHHHHTTTCEEEEES
T ss_pred CCcccCCCcEEEEe----CCHHHHHHHHHHHHHCCCEEEEeC
Confidence 56666678888875 355556667777777788776554
No 68
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=87.75 E-value=3.6 Score=35.93 Aligned_cols=106 Identities=14% Similarity=0.182 Sum_probs=61.8
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHH-CCCeEEEEeCCcc-h---hhhhhhhcccccCCCceEEEEeeCCCCcCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAA-NGIQVTIILTTMN-A---RRFQNAIDRDSRLGREISLRILRFPSQEAGLP 79 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~-rGh~Vt~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 79 (490)
.+++||+++.++..+. +.+|.++..+ .+++|..+.+..- . +..++. ++.+..++ +
T Consensus 3 ~~~~riavl~SG~Gsn---l~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~~---------gIp~~~~~--------~ 62 (215)
T 3tqr_A 3 REPLPIVVLISGNGTN---LQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQA---------DIPTHIIP--------H 62 (215)
T ss_dssp -CCEEEEEEESSCCHH---HHHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHHT---------TCCEEECC--------G
T ss_pred CCCcEEEEEEeCCcHH---HHHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHHc---------CCCEEEeC--------c
Confidence 3568999888766443 4455555544 3689887776322 1 233333 56666553 1
Q ss_pred CCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEecc
Q 044012 80 EGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~~ 146 (490)
.... .-.....++.+.|++.++|+||+-.+.- -...+-+.....++-++++
T Consensus 63 ~~~~----------------~r~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 114 (215)
T 3tqr_A 63 EEFP----------------SRTDFESTLQKTIDHYDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPS 114 (215)
T ss_dssp GGSS----------------SHHHHHHHHHHHHHTTCCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred cccC----------------chhHhHHHHHHHHHhcCCCEEEEccchhhCCHHHHhhccCCeEEeCcc
Confidence 1100 0012245788889999999999876533 4555556666666766444
No 69
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=87.28 E-value=2 Score=38.43 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
||||+.-=-+. |---+.+|+++|.+.| +|+++.+...++-+...+.. ...+++..++.. .+...+
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~siTl----~~pl~~~~~~~~-------~~~~~~-- 65 (247)
T 1j9j_A 1 MRILVTNDDGI-QSKGIIVLAELLSEEH-EVFVVAPDKERSATGHSITI----HVPLWMKKVFIS-------ERVVAY-- 65 (247)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTCCCC----SSCCCEEECCCS-------SSEEEE--
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccccC----CCCeEEEEeccC-------CCCceE--
Confidence 57777764444 3333889999999888 99999998877766654322 123445544310 000000
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEc----------CCCc---chHHHHHHhCCCeEEEec
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSD----------NLFP---WTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D----------~~~~---~~~~~A~~lgiP~v~~~~ 145 (490)
.....-..|-. -.+..++ ..+||+||+- .++. +|+.=|..+|||.|.++.
T Consensus 66 -----~v~GTPaDCV~--lal~~l~-~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 66 -----STTGTPADCVK--LAYNVVM-DKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp -----EESSCHHHHHH--HHHHTTS-TTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred -----EECCcHHHHHH--HHHHhhc-cCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 00111122211 1223333 3589999952 2222 355667779999999865
No 70
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=87.10 E-value=4.3 Score=36.98 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
||||+.-=-+. +---+.+|+++|.+.| +|+++.+...++-+...+.. ...+++..++.. + ......+
T Consensus 1 M~ILlTNDDGi-~ApGi~aL~~aL~~~g-~V~VVAP~~~qSg~g~siTl----~~pl~~~~~~~~----~--~~~~~v~- 67 (280)
T 1l5x_A 1 MKILVTNDDGV-HSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGITL----HKPLRMYEVDLC----G--FRAIATS- 67 (280)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHGGGS-EEEEEEESSCTTTSCSSCCC----SSCBCEEEEECS----S--SEEEEES-
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccccC----CCCeEEEEeccC----C--CceEEEC-
Confidence 57777764444 3333889999999988 99999998887766655332 124555555311 0 0001111
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEE----------c-CCCc---chHHHHHHhCCCeEEEecc
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVS----------D-NLFP---WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~----------D-~~~~---~~~~~A~~lgiP~v~~~~~ 146 (490)
..-..|-.+ .+..+ ..+||+||+ | .++. +|..=|..+|||.|.++..
T Consensus 68 --------GTPaDCV~l--al~~l--~~~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (280)
T 1l5x_A 68 --------GTPSDTVYL--ATFGL--GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAY 128 (280)
T ss_dssp --------SCHHHHHHH--HHHHH--TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred --------CcHHHHHHH--HHhcC--CCCCCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEcc
Confidence 112222211 22222 458999996 2 2333 3455667799999999764
No 71
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=86.47 E-value=0.84 Score=39.73 Aligned_cols=47 Identities=6% Similarity=0.031 Sum_probs=40.2
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
+++||++.-.|+.|-+. ...|.+.|.++|++|.++.++.....+...
T Consensus 3 ~~k~IllgvTGaiaa~k-~~~ll~~L~~~g~eV~vv~T~~A~~fi~~e 49 (209)
T 3zqu_A 3 GPERITLAMTGASGAQY-GLRLLDCLVQEEREVHFLISKAAQLVMATE 49 (209)
T ss_dssp SCSEEEEEECSSSCHHH-HHHHHHHHHHTTCEEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHHHH
Confidence 46799999999988877 889999999999999999998777766554
No 72
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=86.23 E-value=9.8 Score=29.26 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=25.9
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
|...++++||+++- .+-.-...+.+.|.+.|++|+.+.
T Consensus 1 M~~~~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~ 38 (130)
T 3eod_A 1 MTQPLVGKQILIVE----DEQVFRSLLDSWFSSLGATTVLAA 38 (130)
T ss_dssp --CTTTTCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCCCCCeEEEEe----CCHHHHHHHHHHHHhCCceEEEeC
Confidence 56666778888885 455556677778888888877644
No 73
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=86.16 E-value=3.9 Score=38.09 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCcEEEEcCC-CcchHHHHHHhCCCeEEEecc
Q 044012 106 PEIEKLFREQNPNCIVSDNL-FPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~-~~~~~~~A~~lgiP~v~~~~~ 146 (490)
+++.+.|++.+||++|+=.+ ..-...+-+.....++-++++
T Consensus 71 ~~~~~~l~~~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpS 112 (314)
T 1fmt_A 71 QENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGS 112 (314)
T ss_dssp HHHHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeeccccCCHHHHhhccCCEEEEcCC
Confidence 35667788889999997655 334454556666677777665
No 74
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.07 E-value=11 Score=32.29 Aligned_cols=97 Identities=10% Similarity=0.134 Sum_probs=61.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc------hhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN------ARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
+-.|.+++..+.|-..-.+.+|-..+.+|+.|.|+..-.. ...+++. ++.++.... ++.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L---------~v~~~~~g~-----gf~- 92 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH---------GVEFQVMAT-----GFT- 92 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG---------TCEEEECCT-----TCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC---------CcEEEEccc-----ccc-
Confidence 4578888888899999999999999999999999965432 1233333 355665431 111
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF 126 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~ 126 (490)
. .. .....-............+.+.+.++|+||.|-+.
T Consensus 93 ----~---~~-~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~ 130 (196)
T 1g5t_A 93 ----W---ET-QNREADTAACMAVWQHGKRMLADPLLDMVVLDELT 130 (196)
T ss_dssp ----C---CG-GGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHH
T ss_pred ----c---CC-CCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 0 10 11111122223445666677777899999999653
No 75
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=86.03 E-value=8.9 Score=30.68 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=23.6
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
|...+++++|+++- .+-.-...|.+.|.+.|++|..+.
T Consensus 1 Ms~~~~~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~ 38 (154)
T 2rjn_A 1 MSLNYKNYTVMLVD----DEQPILNSLKRLIKRLGCNIITFT 38 (154)
T ss_dssp ---CCSCCEEEEEC----SCHHHHHHHHHHHHTTTCEEEEES
T ss_pred CCCCCCCCeEEEEc----CCHHHHHHHHHHHHHcCCeEEEeC
Confidence 55556778888875 344555667777777788776444
No 76
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=85.27 E-value=5 Score=35.73 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=65.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMS 87 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (490)
||||+.-=-+. |---+.+|+++|.+.| +|+++.+...++-+...+.. ...+++..++..... .+...+
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~siTl----~~pl~~~~~~~~~~~----~~~~~~-- 68 (244)
T 2e6c_A 1 MRILVTNDDGI-YSPGLWALAEAASQFG-EVFVAAPDTEQSAAGHAITI----AHPVRAYPHPSPLHA----PHFPAY-- 68 (244)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEECSSCCCCCSSCCC----SSCBEEEECCCCTTS----CCCCEE--
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccccC----CCCeEEEEeccCcCC----CCCceE--
Confidence 57777764444 3333889999999888 99999998877666554322 225666665321000 000000
Q ss_pred CCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEc----------CCCc---chHHHHHHhCCCeEEEec
Q 044012 88 TSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSD----------NLFP---WTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D----------~~~~---~~~~~A~~lgiP~v~~~~ 145 (490)
.....-..|-.+ .+. + ..+||+||+- .++. ++..=|..+|||.|.++.
T Consensus 69 -----~v~GTPaDCV~l--al~--l-~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 129 (244)
T 2e6c_A 69 -----RVRGTPADCVAL--GLH--L-FGPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSV 129 (244)
T ss_dssp -----EEESCHHHHHHH--HHH--H-SCSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEE
T ss_pred -----EEcCcHHHHHHH--HHc--C-CCCCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEec
Confidence 111122233221 111 2 4589999962 2222 355667779999999865
No 77
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=84.73 E-value=6 Score=36.78 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=26.3
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+|||+|+..+..+ ....++|.++||+|..+.+..
T Consensus 2 ~mrivf~Gtp~fa-----~~~L~~L~~~~~~v~~Vvt~p 35 (314)
T 3tqq_A 2 SLKIVFAGTPQFA-----VPTLRALIDSSHRVLAVYTQP 35 (314)
T ss_dssp CCEEEEEECSGGG-----HHHHHHHHHSSSEEEEEECCC
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 4799999988655 355688888999998887743
No 78
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=84.03 E-value=9.3 Score=33.12 Aligned_cols=103 Identities=12% Similarity=0.108 Sum_probs=58.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcch----hhhhhhhcccccCCCceEEEEeeCCCCcCCCCCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNA----RRFQNAIDRDSRLGREISLRILRFPSQEAGLPEG 81 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (490)
+||+++..+..+. +.+|.+.+.+. +|+|..+.+.... +..++. ++.+..++ +..
T Consensus 1 ~riaVl~SG~Gs~---L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~---------gIp~~~~~--------~~~ 60 (209)
T 1meo_A 1 ARVAVLISGTGSN---LQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERA---------GIPTRVIN--------HKL 60 (209)
T ss_dssp CEEEEEESSSCTT---HHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHT---------TCCEEECC--------GGG
T ss_pred CeEEEEEECCchH---HHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHc---------CCCEEEEC--------ccc
Confidence 4788888666543 44555666554 7998877654322 223333 55555442 111
Q ss_pred ccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEecc
Q 044012 82 CENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (490)
.. ..+...+++.+.|++.+||+||+-.+. .-...+-+.....++-+.++
T Consensus 61 ~~----------------~r~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 110 (209)
T 1meo_A 61 YK----------------NRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPS 110 (209)
T ss_dssp SS----------------SHHHHHHHHHHHHHHTTCCEEEEESCCSCCCHHHHHHTTTSEEEEESS
T ss_pred cC----------------chhhhhHHHHHHHHhcCCCEEEEcchhhhCCHHHHhhhcCCEEEEccC
Confidence 00 001233567778888999999977653 34444556666666766443
No 79
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=83.80 E-value=1.2 Score=38.42 Aligned_cols=46 Identities=15% Similarity=0.000 Sum_probs=36.2
Q ss_pred CCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhh
Q 044012 4 ENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARR 49 (490)
Q Consensus 4 ~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~ 49 (490)
..+++||++.-.|+.+=+.-...|.+.|.++|++|+++.++...+.
T Consensus 4 ~l~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~~~ 49 (201)
T 3lqk_A 4 NFAGKHVGFGLTGSHCTYHEVLPQMERLVELGAKVTPFVTHTVQTT 49 (201)
T ss_dssp CCTTCEEEEECCSCGGGGGGTHHHHHHHHHTTCEEEEECSSCSCCT
T ss_pred CcCCCEEEEEEEChHHHHHHHHHHHHHHhhCCCEEEEEEChhHHHH
Confidence 3567899999888844432789999999999999999999754443
No 80
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=83.64 E-value=6.3 Score=37.06 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=35.5
Q ss_pred CcceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 044012 6 QKLHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILTTMNAR 48 (490)
Q Consensus 6 ~~~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (490)
++++|+|++ -|+.|-..-...||..|+++|++|.++.......
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHN 57 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 456777766 5688999999999999999999999999875443
No 81
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=83.13 E-value=7.6 Score=34.55 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=31.2
Q ss_pred CCcceEEEEcCC--CCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 5 NQKLHVMFLPYI--APGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 5 ~~~~~Il~~~~~--~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
++|+|.+|++.. +.|=..-.+.|++.|+++|.+|.++=
T Consensus 18 ~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 18 YFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp -CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 567777777644 56888899999999999999999985
No 82
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=82.91 E-value=5.7 Score=34.63 Aligned_cols=101 Identities=11% Similarity=0.148 Sum_probs=60.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCc--ch--hhhhhhhcccccCCCceEEEEeeCCCCcCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTM--NA--RRFQNAIDRDSRLGREISLRILRFPSQEAGL 78 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 78 (490)
.+++||+++.++..+- +.+|.+++.+. +++|..+.+.. .. +..++. ++.+..++
T Consensus 6 ~~~~ri~vl~SG~gsn---l~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~---------gIp~~~~~-------- 65 (215)
T 3kcq_A 6 KKELRVGVLISGRGSN---LEALAKAFSTEESSVVISCVISNNAEARGLLIAQSY---------GIPTFVVK-------- 65 (215)
T ss_dssp -CCEEEEEEESSCCHH---HHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHT---------TCCEEECC--------
T ss_pred CCCCEEEEEEECCcHH---HHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHc---------CCCEEEeC--------
Confidence 4567998888665433 55666666544 37888777632 21 233333 56665553
Q ss_pred CCCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEecc
Q 044012 79 PEGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~~ 146 (490)
+... . .+++.+.|++.++|+||+-.+.- -...+-+.....++-++++
T Consensus 66 ~~~~---~------------------~~~~~~~L~~~~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpS 113 (215)
T 3kcq_A 66 RKPL---D------------------IEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPS 113 (215)
T ss_dssp BTTB---C------------------HHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred cccC---C------------------hHHHHHHHHHhCCCEEEEeCCceEeCHHHHhhccCCeEEECcc
Confidence 1110 0 15777888889999999876533 4555556666666766444
No 83
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=82.86 E-value=4.2 Score=35.49 Aligned_cols=106 Identities=9% Similarity=0.049 Sum_probs=59.6
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHH-CCCeEEEEeCCcchh---hhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAA-NGIQVTIILTTMNAR---RFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~-rGh~Vt~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
..++||+|+.++..+. +.+|.+++.+ .+++|..+.+..... ..++. ++.+..++. .
T Consensus 10 ~~~~ri~vl~SG~gsn---l~all~~~~~~~~~eI~~Vis~~~a~~~~~A~~~---------gIp~~~~~~--------~ 69 (215)
T 3da8_A 10 SAPARLVVLASGTGSL---LRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEA---------SVPVFTVRL--------A 69 (215)
T ss_dssp CSSEEEEEEESSCCHH---HHHHHHHSSTTCSEEEEEEEESSCCHHHHHHHHT---------TCCEEECCG--------G
T ss_pred CCCcEEEEEEeCChHH---HHHHHHHHhccCCCeEEEEEeCCchHHHHHHHHc---------CCCEEEeCc--------c
Confidence 4578999998776443 3444455433 346887776644332 23333 555555421 0
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEecc
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (490)
... . -.....++.+.|++.++|+||+-.+. .-...+-+.+...++-++++
T Consensus 70 ~~~--------~--------r~~~d~~~~~~l~~~~~Dlivlagy~~iL~~~~l~~~~~~~iNiHpS 120 (215)
T 3da8_A 70 DHP--------S--------RDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPA 120 (215)
T ss_dssp GSS--------S--------HHHHHHHHHHHHHTTCCSEEEEEECCSCCCHHHHHHHTTTEEEEESS
T ss_pred ccc--------c--------hhhhhHHHHHHHHhhCCCEEEEcCchhhCCHHHHhhccCCeEEeCcc
Confidence 000 0 11235677888999999999976543 34444555566566665443
No 84
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=82.56 E-value=6.3 Score=34.19 Aligned_cols=106 Identities=11% Similarity=0.099 Sum_probs=60.8
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCc--ch--hhhhhhhcccccCCCceEEEEeeCCCCcCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTM--NA--RRFQNAIDRDSRLGREISLRILRFPSQEAGL 78 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 78 (490)
|.++||+++.++..+- +.+|.+++.+. .++|..+.+.. .. +..++. ++.+..++
T Consensus 5 m~~~ri~vl~SG~gsn---l~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~---------gIp~~~~~-------- 64 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSN---MEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAA---------GIATQVFK-------- 64 (209)
T ss_dssp -CCEEEEEEESSCCHH---HHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHT---------TCCEEECC--------
T ss_pred CCCccEEEEEECCcHH---HHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHc---------CCCEEEeC--------
Confidence 4467898887665433 55666677554 37888777632 22 233333 56665553
Q ss_pred CCCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEecc
Q 044012 79 PEGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~~ 146 (490)
+.... .-....+++.+.|++.+||+||+-.+.- -...+-+...-.++-++++
T Consensus 65 ~~~~~----------------~r~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 117 (209)
T 4ds3_A 65 RKDFA----------------SKEAHEDAILAALDVLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPS 117 (209)
T ss_dssp GGGSS----------------SHHHHHHHHHHHHHHHCCSEEEESSCCSCCCHHHHGGGTTCEEEEESS
T ss_pred ccccC----------------CHHHHHHHHHHHHHhcCCCEEEEeccccCcCHHHHhhccCCeEEECCc
Confidence 11100 0112345777888888999999876533 4455556666666665443
No 85
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=82.47 E-value=13 Score=29.08 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=23.0
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
|.+.+++++|+++- .+-.-...|.+.|.+.|++|..+.
T Consensus 1 M~~~~~~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~ 38 (142)
T 3cg4_A 1 MSLAEHKGDVMIVD----DDAHVRIAVKTILSDAGFHIISAD 38 (142)
T ss_dssp -----CCCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCCCCCeEEEEc----CCHHHHHHHHHHHHHCCeEEEEeC
Confidence 55566778888875 445556677777777788776544
No 86
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=82.45 E-value=1.6 Score=35.08 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=35.4
Q ss_pred CCCCCCcceEEEEcCCCC-CChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 1 MVSENQKLHVMFLPYIAP-GHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~-GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
|..+..|+=++++..|.. ..+.-.+=++..|.++||+|+++.++.....++-.
T Consensus 1 ~~~~~~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~npAAlkLleva 54 (157)
T 1kjn_A 1 MKTESTGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQVA 54 (157)
T ss_dssp -----CCEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHH
T ss_pred CccccceeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCHHHHhheecc
Confidence 444444443444556644 44455778899999999999999998887777765
No 87
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=82.38 E-value=1.7 Score=37.80 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=38.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
.+++||++.-.|+.+-+. ...|.+.|.++| +|.++.++...+.+...
T Consensus 17 l~~k~IllgvTGsiaa~k-~~~ll~~L~~~g-~V~vv~T~~A~~fv~~~ 63 (209)
T 1mvl_A 17 PRKPRVLLAASGSVAAIK-FGNLCHCFTEWA-EVRAVVTKSSLHFLDKL 63 (209)
T ss_dssp --CCEEEEEECSSGGGGG-HHHHHHHHHTTS-EEEEEECTGGGGTCCGG
T ss_pred cCCCEEEEEEeCcHHHHH-HHHHHHHHhcCC-CEEEEEcchHHHhcCHH
Confidence 456899999999988776 899999999999 99999998776665543
No 88
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=81.60 E-value=19 Score=32.11 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=29.5
Q ss_pred CcceEEEEc-CC-CCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 6 QKLHVMFLP-YI-APGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~-~~-~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
++|+.+|++ .. +.|-..-.+.|++.|+++|++|.++=
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 455655555 33 56889999999999999999999985
No 89
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=80.89 E-value=17 Score=30.39 Aligned_cols=45 Identities=18% Similarity=0.054 Sum_probs=29.1
Q ss_pred eEeeccchh-Hhhh-ccCCceeecccCChhHHHHH---HHhCCcEeeccCc
Q 044012 348 FIIKGWAPQ-VLIL-EHQAIGGFLTHCGWNSILEG---VSAGVPMVTWPVF 393 (490)
Q Consensus 348 v~~~~~~p~-~~ll-~~~~~~~~ItHGG~~s~~ea---l~~GvP~l~~P~~ 393 (490)
..+++..+. ..++ ..++. .++-=||.||+.|+ +.+++|++++|.+
T Consensus 91 ~i~~~~~~~Rk~~m~~~sda-~IvlpGg~GTL~E~~~al~~~kpV~~l~~~ 140 (176)
T 2iz6_A 91 PIVTGLGSARDNINALSSNV-LVAVGMGPGTAAEVALALKAKKPVVLLGTQ 140 (176)
T ss_dssp EEECCCCSSSCCCCGGGCSE-EEEESCCHHHHHHHHHHHHTTCCEEEESCC
T ss_pred eEEcCCHHHHHHHHHHhCCE-EEEecCCccHHHHHHHHHHhCCcEEEEcCc
Confidence 344555553 3333 34443 45566899987655 6799999999983
No 90
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=80.77 E-value=2.3 Score=36.35 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=38.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
+||++.-.|+.|-+ =...+.+.|.++|++|.++.++...+.+..
T Consensus 2 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~~i~~ 45 (189)
T 2ejb_A 2 QKIALCITGASGVI-YGIKLLQVLEELDFSVDLVISRNAKVVLKE 45 (189)
T ss_dssp CEEEEEECSSTTHH-HHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHhhH
Confidence 58999999998855 578999999999999999999887777665
No 91
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=80.68 E-value=1.7 Score=39.02 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=34.9
Q ss_pred CCCC-CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 1 MVSE-NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 1 m~~~-~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
|++. +++||||+.-=-+. |---+.+|+++|.+ +|+|+++.+...++-....
T Consensus 4 ~~~~~~~~m~ILlTNDDGi-~apGi~aL~~~l~~-~~~V~VVAP~~~~Sg~g~s 55 (261)
T 3ty2_A 4 MKKTATPKLRLLLSNDDGV-YAKGLAILAKTLAD-LGEVDVVAPDRNRSGASNS 55 (261)
T ss_dssp -------CCEEEEECSSCT-TCHHHHHHHHHHTT-TSEEEEEEESSCCTTCTTC
T ss_pred hhhccCCCCeEEEEcCCCC-CCHHHHHHHHHHHh-cCCEEEEecCCCCcCcccc
Confidence 4544 56799998885555 44447888999977 8999999998877765554
No 92
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=80.28 E-value=21 Score=30.85 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=59.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCc-ch---hhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTM-NA---RRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
|+||+++..+.. ..+.+|.++..+. ..+|..+.+.. .. +..++. ++.+..++ +.
T Consensus 2 m~riavl~Sg~G---snl~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~---------gIp~~~~~--------~~ 61 (211)
T 3p9x_A 2 MKRVAIFASGSG---TNAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVH---------EIPVCALD--------PK 61 (211)
T ss_dssp -CEEEEECCTTC---HHHHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTT---------TCCEEECC--------GG
T ss_pred CCEEEEEEeCCc---hHHHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHc---------CCCEEEeC--------hh
Confidence 689999987753 3467777766443 25787777642 22 223332 56555543 11
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEecc
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~~ 146 (490)
... .-+....++.+.|++.+||+||+-.+.- -...+-+.....++-+.++
T Consensus 62 ~~~----------------~r~~~d~~~~~~l~~~~~Dliv~agy~~Il~~~~l~~~~~~~iNiHpS 112 (211)
T 3p9x_A 62 TYP----------------SKEAYEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPS 112 (211)
T ss_dssp GSS----------------SHHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHHHHTTSEEEEESS
T ss_pred hcC----------------chhhhHHHHHHHHHhcCCCEEEEeCchhhcCHHHHhhccCCeEEECCc
Confidence 110 0112345778888899999999876533 4445556666666666443
No 93
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=79.88 E-value=1.2 Score=38.35 Aligned_cols=48 Identities=4% Similarity=-0.023 Sum_probs=39.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
.+++||++.-.|+.|=+. ...|.+.|.++|++|.++.++...+.+...
T Consensus 6 l~~k~IllgvTGs~aa~k-~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~ 53 (194)
T 1p3y_1 6 LKDKKLLIGICGSISSVG-ISSYLLYFKSFFKEIRVVMTKTAEDLIPAH 53 (194)
T ss_dssp GGGCEEEEEECSCGGGGG-THHHHHHHTTTSSEEEEEECHHHHHHSCHH
T ss_pred cCCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEEchhHHHHHHHH
Confidence 556799999888887775 789999999999999999998776665543
No 94
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=79.43 E-value=7.5 Score=36.74 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=34.4
Q ss_pred CcceEEEEc-CCCCCChHHHHHHHHHHH--HCCCeEEEEeCCcc
Q 044012 6 QKLHVMFLP-YIAPGHMVPMVDMARLFA--ANGIQVTIILTTMN 46 (490)
Q Consensus 6 ~~~~Il~~~-~~~~GHi~p~l~LA~~L~--~rGh~Vt~~~~~~~ 46 (490)
+.++|+|++ -|+.|-..-...||..|+ ++|++|.++.....
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 446777776 568899999999999999 89999999998743
No 95
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=78.97 E-value=11 Score=37.47 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=64.8
Q ss_pred eE-eeccchhH---hhhccCCceeecc---cCChh-HHHHHHHhCC-----cEeeccCcccccchHHHHHHhhccceeec
Q 044012 348 FI-IKGWAPQV---LILEHQAIGGFLT---HCGWN-SILEGVSAGV-----PMVTWPVFAEQFNNEKLVTQVLKFGLPVG 414 (490)
Q Consensus 348 v~-~~~~~p~~---~ll~~~~~~~~It---HGG~~-s~~eal~~Gv-----P~l~~P~~~DQ~~na~rv~e~~G~G~~l~ 414 (490)
++ +.+++++. .+++.+++ ||. .=|.| ++.||+++|+ |+|+--..+ .+..+ .-|+.++
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv--~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G----~~~~l----~~g~lv~ 402 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDV--GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAG----AANEL----TSALIVN 402 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSE--EEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBG----GGGTC----TTSEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHccE--EEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCC----CHHHh----CCeEEEC
Confidence 44 45777754 47788888 654 33554 8999999998 555543221 22212 2366665
Q ss_pred cccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q 044012 415 NEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDIRLY 487 (490)
Q Consensus 415 ~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 487 (490)
. -+.++++++|.++|+++. +.-+++.++..+..+ + .+...-++.+++.+.+.
T Consensus 403 p-------------~d~~~lA~ai~~lL~~~~---~~r~~~~~~~~~~v~----~-~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 403 P-------------YDRDEVAAALDRALTMSL---AERISRHAEMLDVIV----K-NDINHWQECFISDLKQI 454 (482)
T ss_dssp T-------------TCHHHHHHHHHHHHTCCH---HHHHHHHHHHHHHHH----H-TCHHHHHHHHHHHHHHS
T ss_pred C-------------CCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHH----h-CCHHHHHHHHHHHHHhc
Confidence 4 378999999999998331 122333333333333 2 34555667777777654
No 96
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=78.91 E-value=2 Score=36.96 Aligned_cols=45 Identities=7% Similarity=0.119 Sum_probs=38.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~~~ 53 (490)
|||++.-.|+.|-+. ...|.+.|.++ |++|.++.++...+.+...
T Consensus 1 ~~IllgvTGsiaa~k-~~~ll~~L~~~~g~~V~vv~T~~A~~fi~~~ 46 (197)
T 1sbz_A 1 MKLIVGMTGATGAPL-GVALLQALREMPNVETHLVMSKWAKTTIELE 46 (197)
T ss_dssp CEEEEEECSSSCHHH-HHHHHHHHHTCTTCEEEEEECHHHHHHHHHH
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHhccCCEEEEEECchHHHHhHHH
Confidence 589998888887766 89999999999 9999999998877766644
No 97
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=78.66 E-value=5.8 Score=38.25 Aligned_cols=89 Identities=10% Similarity=0.055 Sum_probs=54.8
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc-chhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCcc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM-NARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCE 83 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (490)
++++||+++..+.. -+.+++++++.|++|.++..+. ........ . .+..++..
T Consensus 5 ~~~~~ilI~g~g~~-----~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~a---------d-~~~~~~~~----------- 58 (403)
T 4dim_A 5 YDNKRLLILGAGRG-----QLGLYKAAKELGIHTIAGTMPNAHKPCLNLA---------D-EISYMDIS----------- 58 (403)
T ss_dssp -CCCEEEEECCCGG-----GHHHHHHHHHHTCEEEEEECSSCCHHHHHHC---------S-EEEECCTT-----------
T ss_pred cCCCEEEEECCcHh-----HHHHHHHHHHCCCEEEEEcCCCCCCcchhhC---------C-eEEEecCC-----------
Confidence 56789999987653 3668999999999999997543 22222211 1 12222100
Q ss_pred CCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc---chHHHHHHhCCC
Q 044012 84 NLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP---WTVSIAEELGIP 139 (490)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~---~~~~~A~~lgiP 139 (490)
-.+.+.+++++.++|.|+...... ....+++.+|+|
T Consensus 59 --------------------d~~~l~~~~~~~~~d~v~~~~~~~~~~~~a~~~~~~gl~ 97 (403)
T 4dim_A 59 --------------------NPDEVEQKVKDLNLDGAATCCLDTGIVSLARICDKENLV 97 (403)
T ss_dssp --------------------CHHHHHHHTTTSCCSEEECCSCSTTHHHHHHHHHHHTCS
T ss_pred --------------------CHHHHHHHHHHcCCCEEEeCCcchhHHHHHHHHHHcCcC
Confidence 024566777788999999632222 345577888986
No 98
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=78.61 E-value=2.4 Score=35.71 Aligned_cols=44 Identities=9% Similarity=0.014 Sum_probs=36.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
+||++.-.|+.|=+. ...+.+.|+++|++|+++.++...+.+..
T Consensus 6 k~IllgvTGs~aa~k-~~~ll~~L~~~g~~V~vv~T~~A~~fi~~ 49 (175)
T 3qjg_A 6 ENVLICLCGSVNSIN-ISHYIIELKSKFDEVNVIASTNGRKFING 49 (175)
T ss_dssp CEEEEEECSSGGGGG-HHHHHHHHTTTCSEEEEEECTGGGGGSCH
T ss_pred CEEEEEEeCHHHHHH-HHHHHHHHHHCCCEEEEEECcCHHHHhhH
Confidence 689888888877665 88999999999999999999877766554
No 99
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=78.50 E-value=19 Score=33.08 Aligned_cols=105 Identities=11% Similarity=0.180 Sum_probs=62.9
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeC--CcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILT--TMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
.+++||+++.++. || -+.+|..+..+. +.+|..+.+ ++..+..++. ++.+..+|..
T Consensus 103 ~~~~ri~vl~Sg~-g~--nl~~ll~~~~~g~l~~~I~~Visn~~~~~~~A~~~---------gIp~~~~~~~-------- 162 (302)
T 3o1l_A 103 AQKKRVVLMASRE-SH--CLADLLHRWHSDELDCDIACVISNHQDLRSMVEWH---------DIPYYHVPVD-------- 162 (302)
T ss_dssp TSCCEEEEEECSC-CH--HHHHHHHHHHTTCSCSEEEEEEESSSTTHHHHHTT---------TCCEEECCCC--------
T ss_pred CCCcEEEEEEeCC-ch--hHHHHHHHHHCCCCCcEEEEEEECcHHHHHHHHHc---------CCCEEEcCCC--------
Confidence 3578999988666 54 466666665443 478887775 3344554444 6777766411
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEecc
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~~ 146 (490)
. . . . .....++.+.|++.++|+||.-.+.- -...+-+.+.-.++-++++
T Consensus 163 ~-~-----~--r---------~~~~~~~~~~l~~~~~DliVlagym~IL~~~~l~~~~~~~INiHpS 212 (302)
T 3o1l_A 163 P-K-----D--K---------EPAFAEVSRLVGHHQADVVVLARYMQILPPQLCREYAHQVINIHHS 212 (302)
T ss_dssp S-S-----C--C---------HHHHHHHHHHHHHTTCSEEEESSCCSCCCTTHHHHTTTCEEEEESS
T ss_pred c-C-----C--H---------HHHHHHHHHHHHHhCCCEEEHhHhhhhcCHHHHhhhhCCeEEeCcc
Confidence 0 0 0 0 02245677888899999999876532 3444555565566665443
No 100
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=78.37 E-value=3.4 Score=33.12 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=35.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
++.||++.+.++-+|-....-++..|..+|++|.........
T Consensus 2 ~~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~ 43 (137)
T 1ccw_A 2 EKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQ 43 (137)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECH
T ss_pred CCCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 457899999999999999999999999999999977654333
No 101
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=78.23 E-value=2.4 Score=36.78 Aligned_cols=44 Identities=9% Similarity=-0.027 Sum_probs=32.7
Q ss_pred CCcceEEEEcCCCCCChHH-HHHHHHHHHHCCCeEEEEeCCcchhh
Q 044012 5 NQKLHVMFLPYIAPGHMVP-MVDMARLFAANGIQVTIILTTMNARR 49 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p-~l~LA~~L~~rGh~Vt~~~~~~~~~~ 49 (490)
.+++||++.-.|+ +..+- ...+.+.|.++|++|.++.++.....
T Consensus 3 l~~k~IllgiTGs-iaayk~~~~ll~~L~~~g~eV~vv~T~~A~~v 47 (207)
T 3mcu_A 3 LKGKRIGFGFTGS-HCTYEEVMPHLEKLIAEGAEVRPVVSYTVQST 47 (207)
T ss_dssp CTTCEEEEEECSC-GGGGTTSHHHHHHHHHTTCEEEEEECC-----
T ss_pred CCCCEEEEEEECh-HHHHHHHHHHHHHHHhCCCEEEEEEehHHHHH
Confidence 4567999888887 44554 78999999999999999999765533
No 102
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=77.93 E-value=7.3 Score=36.03 Aligned_cols=40 Identities=15% Similarity=0.005 Sum_probs=26.9
Q ss_pred HHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEecc
Q 044012 107 EIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (490)
++.+.+++.+||++|+-.+. .-...+-+.....++-++++
T Consensus 66 ~~~~~l~~~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpS 106 (305)
T 2bln_A 66 LWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGS 106 (305)
T ss_dssp HHHHHHHHTCCSEEEEESCCSCCCHHHHTTCTTCEEEEESS
T ss_pred HHHHHHHhcCCCEEEEeccccccCHHHHhcCcCCEEEecCC
Confidence 45667788899999976543 34454555556667777665
No 103
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=76.94 E-value=20 Score=35.53 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=68.2
Q ss_pred ceEeeccchh---HhhhccCCceeecc---cCChh-HHHHHHHhC---CcEeeccCcccccchHHHHHHhhc-cceeecc
Q 044012 347 GFIIKGWAPQ---VLILEHQAIGGFLT---HCGWN-SILEGVSAG---VPMVTWPVFAEQFNNEKLVTQVLK-FGLPVGN 415 (490)
Q Consensus 347 nv~~~~~~p~---~~ll~~~~~~~~It---HGG~~-s~~eal~~G---vP~l~~P~~~DQ~~na~rv~e~~G-~G~~l~~ 415 (490)
.|++...+|+ ..++..+++ |+. .=|+| +..|++++| .|+|+--+.+ .+ +.+| -|+.++.
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv--~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG----a~----~~l~~~allVnP 422 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADL--LIFNSTVDGQNLSTFEAPLVNERDADVILSETCG----AA----EVLGEYCRSVNP 422 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSE--EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT----TH----HHHGGGSEEECT
T ss_pred CEEEeCCCCHHHHHHHHHhccE--EEECcccccCChhHHHHHHhCCCCCCEEEeCCCC----CH----HHhCCCEEEECC
Confidence 4777777776 457778888 553 45777 568999996 5555432221 22 2333 3677754
Q ss_pred ccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q 044012 416 EIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDIRLY 487 (490)
Q Consensus 416 ~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 487 (490)
.+.++++++|.++|+++ + ++-+++.+++.+.+. ..+...=.+.++++|...
T Consensus 423 -------------~D~~~lA~AI~~aL~m~-~--~er~~r~~~~~~~V~-----~~d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 423 -------------FDLVEQAEAISAALAAG-P--RQRAEAAARRRDAAR-----PWTLEAWVQAQLDGLAAD 473 (496)
T ss_dssp -------------TBHHHHHHHHHHHHHCC-H--HHHHHHHHHHHHHHT-----TCBHHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCC-H--HHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHhhc
Confidence 48899999999999833 1 133444444444443 344455568888887653
No 104
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=76.90 E-value=6.2 Score=40.78 Aligned_cols=35 Identities=17% Similarity=-0.072 Sum_probs=26.7
Q ss_pred HhhhccCCceeeccc----CChhHHHHHHHhCCcEeeccCc
Q 044012 357 VLILEHQAIGGFLTH----CGWNSILEGVSAGVPMVTWPVF 393 (490)
Q Consensus 357 ~~ll~~~~~~~~ItH----GG~~s~~eal~~GvP~l~~P~~ 393 (490)
.++++.|++ ||.= |-..+..||+++|+|+|+.-..
T Consensus 513 ~~~~~~adv--fV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 513 DEFVRGCHL--GVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp HHHHHHCSE--EECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred HHHHhhceE--EEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 458889998 6642 2345899999999999987553
No 105
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=76.71 E-value=12 Score=29.17 Aligned_cols=39 Identities=8% Similarity=-0.013 Sum_probs=19.2
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.+..+++||+++- .+-.-...|.+.|.+.|++|..+.+
T Consensus 1 Ms~~~~~~~ilivd----d~~~~~~~l~~~L~~~~~~v~~~~~ 39 (137)
T 3hdg_A 1 MSLREVALKILIVE----DDTDAREWLSTIISNHFPEVWSAGD 39 (137)
T ss_dssp ------CCCEEEEC----SCHHHHHHHHHHHHTTCSCEEEESS
T ss_pred CCccccccEEEEEe----CCHHHHHHHHHHHHhcCcEEEEECC
Confidence 44445567777765 3444455566666666666655443
No 106
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=76.70 E-value=24 Score=30.44 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=20.6
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEE
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTII 41 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~ 41 (490)
|...++++||+++- .|-.-...|...|.+.|++|..+
T Consensus 1 M~~~~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~ 37 (233)
T 1ys7_A 1 MDTGVTSPRVLVVD----DDSDVLASLERGLRLSGFEVATA 37 (233)
T ss_dssp ------CCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCCeEEEEe----CCHHHHHHHHHHHHhCCCEEEEE
Confidence 55556677888775 44455566777777778876543
No 107
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=76.59 E-value=6 Score=38.50 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=23.6
Q ss_pred HHHHHHhhcCCCcEEEEcC--CCcchHHHHHHhCCCe
Q 044012 106 PEIEKLFREQNPNCIVSDN--LFPWTVSIAEELGIPR 140 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~--~~~~~~~~A~~lgiP~ 140 (490)
+.+.++.++.++|.|+.-. ....+..+++.+|+|.
T Consensus 65 ~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~lglpg 101 (425)
T 3vot_A 65 DVVRQTFVEFPFDGVMTLFEPALPFTAKAAEALNLPG 101 (425)
T ss_dssp HHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHTTCSS
T ss_pred HHHHHhhhhcCCCEEEECCchhHHHHHHHHHHcCCCC
Confidence 4455566678999998532 2224566889999994
No 108
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=76.26 E-value=12 Score=35.36 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=36.8
Q ss_pred CcceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 6 QKLHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 6 ~~~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
++++|+|++ -|+.|-..-...||..|+++|++|.++..... ..+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~ 71 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA-HSLRDI 71 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT-CHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC-CCHHHH
Confidence 456666665 45889999999999999999999999998763 344443
No 109
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=75.56 E-value=9 Score=37.74 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=27.9
Q ss_pred HHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 107 EIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
++.+++++.+||++|.+.. ...+|+.+|||++.+
T Consensus 366 ~le~~i~~~~pDllig~~~---~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 366 DLEHAARAGQAQLVIGNSH---ALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHHHTCSEEEECTT---HHHHHHHTTCCEEEC
T ss_pred HHHHHHHhcCCCEEEEChh---HHHHHHHcCCCEEEe
Confidence 4667777889999998844 567999999999875
No 110
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=75.04 E-value=24 Score=26.75 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=19.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+++||+++- .+-.-...|.+.|.+.|++|..+.
T Consensus 2 ~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~ 34 (127)
T 3i42_A 2 SLQQALIVE----DYQAAAETFKELLEMLGFQADYVM 34 (127)
T ss_dssp CCEEEEEEC----SCHHHHHHHHHHHHHTTEEEEEES
T ss_pred CcceEEEEc----CCHHHHHHHHHHHHHcCCCEEEEC
Confidence 456777764 344445566666777777666544
No 111
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=74.75 E-value=30 Score=27.40 Aligned_cols=34 Identities=6% Similarity=0.187 Sum_probs=20.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
.+++||+++- .+-.-...|.+.|.+.|++|..+.
T Consensus 12 ~~~~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~ 45 (153)
T 3hv2_A 12 TRRPEILLVD----SQEVILQRLQQLLSPLPYTLHFAR 45 (153)
T ss_dssp CSCCEEEEEC----SCHHHHHHHHHHHTTSSCEEEEES
T ss_pred cCCceEEEEC----CCHHHHHHHHHHhcccCcEEEEEC
Confidence 4556777764 344445556666666677766444
No 112
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=74.35 E-value=23 Score=27.48 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=20.8
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCC--eEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGI--QVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh--~Vt~~~~ 43 (490)
|.+++++++|+++- .+-.-...+.+.|.+.|+ +|..+.+
T Consensus 1 M~~m~~~~~ILivd----d~~~~~~~l~~~L~~~g~~~~v~~~~~ 41 (143)
T 2qvg_A 1 MSLAADKVDILYLE----DDEVDIQSVERVFHKISSLIKIEIAKS 41 (143)
T ss_dssp ------CCSEEEEC----CCHHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred CCcccCCCeEEEEe----CCHHHHHHHHHHHHHhCCCceEEEECC
Confidence 56666667887775 344555566777777776 5555443
No 113
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=73.27 E-value=28 Score=26.79 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=20.8
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEE
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTI 40 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~ 40 (490)
.++++|+++- .+-.-...|.+.|.+.|++|+.
T Consensus 7 ~~~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~ 38 (140)
T 3cg0_A 7 DDLPGVLIVE----DGRLAAATLRIQLESLGYDVLG 38 (140)
T ss_dssp -CCCEEEEEC----CBHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEE----CCHHHHHHHHHHHHHCCCeeEE
Confidence 5567888775 4445555667777777887764
No 114
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=72.88 E-value=20 Score=31.49 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=28.7
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
..+|||.|+-.|..|- .||..|+++||+|+.+..
T Consensus 4 ~~~mkI~IIG~G~~G~-----sLA~~L~~~G~~V~~~~~ 37 (232)
T 3dfu_A 4 APRLRVGIFDDGSSTV-----NMAEKLDSVGHYVTVLHA 37 (232)
T ss_dssp CCCCEEEEECCSCCCS-----CHHHHHHHTTCEEEECSS
T ss_pred CCCcEEEEEeeCHHHH-----HHHHHHHHCCCEEEEecC
Confidence 4568999999988874 589999999999998766
No 115
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=72.64 E-value=30 Score=26.65 Aligned_cols=33 Identities=6% Similarity=0.018 Sum_probs=20.6
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+++||+++- .+-.-...|.+.|.+.|++|..+.
T Consensus 2 ~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~ 34 (140)
T 2qr3_A 2 SLGTIIIVD----DNKGVLTAVQLLLKNHFSKVITLS 34 (140)
T ss_dssp CCCEEEEEC----SCHHHHHHHHHHHTTTSSEEEEEC
T ss_pred CCceEEEEe----CCHHHHHHHHHHHHhCCcEEEEeC
Confidence 457777775 344445566667766777776444
No 116
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=72.64 E-value=3.2 Score=35.99 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=36.9
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHH-CCCeEEEEeCCcchhhhhhh
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAA-NGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~~~ 53 (490)
.+++||++.-.|+.+=+. ...|.+.|.+ +|++|.++.++...+.+...
T Consensus 17 l~~k~IllgvTGsiaa~k-~~~lv~~L~~~~g~~V~vv~T~~A~~fi~~~ 65 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVAALK-LPLLVSKLLDIPGLEVAVVTTERAKHFYSPQ 65 (206)
T ss_dssp CSSEEEEEEECSSGGGGT-HHHHHHHHC---CEEEEEEECTGGGGSSCGG
T ss_pred cCCCEEEEEEeChHHHHH-HHHHHHHHhcccCCEEEEEECHhHHHHhCHH
Confidence 456799999888887554 5899999998 89999999998766665543
No 117
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=72.26 E-value=24 Score=29.76 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=30.6
Q ss_pred eEEEE-cCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 9 HVMFL-PYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 9 ~Il~~-~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
.|+|. +-|+-|-..-...||..|+++|++|.++-.....
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM 42 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 34444 3557899999999999999999999999765433
No 118
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=72.07 E-value=5.8 Score=37.95 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=31.4
Q ss_pred cceEEEEcC-CCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPY-IAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~-~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|++|++++. ++.|-..-...||..|+++|+.|.++..
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 578877764 4678999999999999999999999988
No 119
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=69.20 E-value=3.8 Score=34.66 Aligned_cols=44 Identities=5% Similarity=-0.003 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
+||++.-.|+.|=+ -...+.+.|.++|++|.++.++...+.+..
T Consensus 3 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~ 46 (181)
T 1g63_A 3 GKLLICATASINVI-NINHYIVELKQHFDEVNILFSPSSKNFINT 46 (181)
T ss_dssp CCEEEEECSCGGGG-GHHHHHHHHTTTSSCEEEEECGGGGGTSCG
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchhHHHHHHH
Confidence 47888888877666 678999999999999999999876655544
No 120
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=68.15 E-value=48 Score=30.12 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=63.5
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCC--cchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTT--MNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
.+++||+++.++. || .+.+|..+..+. ..+|..+.+. ......++. ++.+..+|..
T Consensus 88 ~~~~ri~vl~Sg~-g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~---------gIp~~~~~~~-------- 147 (286)
T 3n0v_A 88 NHRPKVVIMVSKA-DH--CLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWH---------KIPYYHFALD-------- 147 (286)
T ss_dssp TCCCEEEEEESSC-CH--HHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHT---------TCCEEECCCB--------
T ss_pred CCCcEEEEEEeCC-CC--CHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHc---------CCCEEEeCCC--------
Confidence 4578999888766 43 556666665432 4787777653 334454444 6777766411
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEecc
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (490)
. . . -.....++.+.|++.++|+||.-.+. .-...+-+.+.-.++-++++
T Consensus 148 ~-~--------~--------r~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpS 197 (286)
T 3n0v_A 148 P-K--------D--------KPGQERKVLQVIEETGAELVILARYMQVLSPELCRRLDGWAINIHHS 197 (286)
T ss_dssp T-T--------B--------HHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEEEEEC
T ss_pred c-C--------C--------HHHHHHHHHHHHHhcCCCEEEecccccccCHHHHhhhcCCeEEeccc
Confidence 0 0 0 01224567788888899999987653 34555666666667766444
No 121
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=67.28 E-value=76 Score=29.51 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=26.1
Q ss_pred CCCCcceEEEEcCCCCCChHHHHHHHHHHHH--CCCeEEEEeC
Q 044012 3 SENQKLHVMFLPYIAPGHMVPMVDMARLFAA--NGIQVTIILT 43 (490)
Q Consensus 3 ~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~--rGh~Vt~~~~ 43 (490)
+.+++|+|++.- +.|-+ -..|++.|.+ +||+|+.+.-
T Consensus 6 ~~~~~~~vlVTG--atG~I--G~~l~~~L~~~~~g~~V~~~~r 44 (362)
T 3sxp_A 6 DELENQTILITG--GAGFV--GSNLAFHFQENHPKAKVVVLDK 44 (362)
T ss_dssp CCCTTCEEEEET--TTSHH--HHHHHHHHHHHCTTSEEEEEEC
T ss_pred hhcCCCEEEEEC--CCCHH--HHHHHHHHHhhCCCCeEEEEEC
Confidence 345667777663 33433 3478899999 9999999875
No 122
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=67.23 E-value=15 Score=32.07 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=62.7
Q ss_pred cceEEEEcCCCCCChHH----HHHHHHHHHHC-CCeEEEEeCCcc-hhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 7 KLHVMFLPYIAPGHMVP----MVDMARLFAAN-GIQVTIILTTMN-ARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p----~l~LA~~L~~r-Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
|..|+++.--..|.+.| ++.-|+.|++. |-+|+.++-... .+.++.... .|.. +.+.+.. +
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~~~~~~~~----~Gad-~v~~v~~--------~ 69 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILP----YGVD-KLHVFDA--------E 69 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTTTHHHHGG----GTCS-EEEEEEC--------G
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHh----cCCC-EEEEecC--------c
Confidence 55788888777777766 56778888764 777776664332 222222211 1211 1222221 1
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCc---chHHHHHHhCCCeEEE
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFP---WTVSIAEELGIPRLAF 143 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~---~~~~~A~~lgiP~v~~ 143 (490)
....+. ...+...+.+++++.+||+|++-.-.. .+..+|..|++|.+.-
T Consensus 70 ~~~~~~--------------~~~~a~~l~~~i~~~~p~~Vl~g~t~~G~~laprlAa~L~~~~~sd 121 (217)
T 3ih5_A 70 GLYPYT--------------SLPHTSILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTAD 121 (217)
T ss_dssp GGSSCC--------------HHHHHHHHHHHHHHHCCSEEEEECSHHHHHHHHHHHHHTTCCCBCS
T ss_pred ccccCC--------------HHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHhCCCccce
Confidence 111100 012234555566667999999886444 3678999999998764
No 123
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=66.96 E-value=38 Score=33.89 Aligned_cols=35 Identities=11% Similarity=0.289 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHh-------CCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEEL-------GIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~l-------giP~v~~ 143 (490)
.++.+.+++.+||+||.... ...+|+.+ |||++.+
T Consensus 428 ~~l~~~i~~~~pDLlig~s~---~k~~a~~~~~~~~~~giP~iri 469 (523)
T 3u7q_B 428 WHLRSLVFTDKPDFMIGNSY---GKFIQRDTLHKGKEFEVPLIRI 469 (523)
T ss_dssp HHHHHHHHHTCCSEEEECTT---HHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHHHhcCCCEEEECcc---HHHHHHHhhcccccCCCceEEe
Confidence 46677788889999999854 34466666 9999875
No 124
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=66.21 E-value=67 Score=29.28 Aligned_cols=105 Identities=10% Similarity=0.129 Sum_probs=64.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCC--cchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTT--MNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPE 80 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (490)
.+++||+++.++. || -+.+|..+..+. ..+|..+.+. +.....++. ++.+..+|..
T Consensus 93 ~~~~ri~vl~Sg~-g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~---------gIp~~~~~~~-------- 152 (292)
T 3lou_A 93 AARPKVLIMVSKL-EH--CLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQH---------GLPFRHFPIT-------- 152 (292)
T ss_dssp TSCCEEEEEECSC-CH--HHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHT---------TCCEEECCCC--------
T ss_pred CCCCEEEEEEcCC-Cc--CHHHHHHHHHcCCCCcEEEEEEeCcHHHHHHHHHc---------CCCEEEeCCC--------
Confidence 4578999888665 54 566666665543 4687777653 334454444 6777776511
Q ss_pred CccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEecc
Q 044012 81 GCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (490)
. . . . .....++.+.|++.++|+||.-.+. .-...+-+.+.-.++-++++
T Consensus 153 ~-~------~-r---------~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpS 202 (292)
T 3lou_A 153 A-D------T-K---------AQQEAQWLDVFETSGAELVILARYMQVLSPEASARLANRAINIHHS 202 (292)
T ss_dssp S-S------C-H---------HHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEEEEEE
T ss_pred c-C------C-H---------HHHHHHHHHHHHHhCCCEEEecCchhhCCHHHHhhhcCCeEEeCCC
Confidence 0 0 0 0 1224567788888899999987653 34555666676667766444
No 125
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=66.05 E-value=11 Score=29.96 Aligned_cols=46 Identities=7% Similarity=0.025 Sum_probs=32.8
Q ss_pred cceEEEEcC-C--CCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 7 KLHVMFLPY-I--APGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 7 ~~~Il~~~~-~--~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
++|++|+-. + +.......+.+|...++.||+|+++...+....+.+
T Consensus 15 ~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~dGV~~l~k 63 (134)
T 3mc3_A 15 XXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXGPXLLDX 63 (134)
T ss_dssp CCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTGGGGGBH
T ss_pred cceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeCcHHHHhh
Confidence 456655543 4 456677788899999999999999988665544433
No 126
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=65.79 E-value=44 Score=25.80 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=21.6
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+++||+++- .+-.-...|.+.|.+.|++|..+.+
T Consensus 2 ~~~~ilivd----d~~~~~~~l~~~l~~~g~~v~~~~~ 35 (143)
T 3jte_A 2 SLAKILVID----DESTILQNIKFLLEIDGNEVLTASS 35 (143)
T ss_dssp -CCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESS
T ss_pred CCCEEEEEc----CCHHHHHHHHHHHHhCCceEEEeCC
Confidence 457777775 3445556677777777887765543
No 127
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=65.70 E-value=7.4 Score=32.14 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=36.3
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
++.||++.+.++-.|-....-++..|...|++|.+......
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p 57 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQT 57 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 56899999999999999999999999999999998875433
No 128
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=65.09 E-value=34 Score=31.20 Aligned_cols=105 Identities=13% Similarity=0.164 Sum_probs=60.9
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCc---chhhhhhhhcccccCCCceEEEEeeCCCCcCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTM---NARRFQNAIDRDSRLGREISLRILRFPSQEAGLP 79 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 79 (490)
.+++||+++.++. || -+.+|..+..+. ..+|..+.+.. ..+..++. ++.+..+|..
T Consensus 87 ~~~~ri~vl~Sg~-g~--nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~~---------gIp~~~~~~~------- 147 (288)
T 3obi_A 87 ETRRKVMLLVSQS-DH--CLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFG---------DIPFYHFPVN------- 147 (288)
T ss_dssp TSCEEEEEEECSC-CH--HHHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTTT---------TCCEEECCCC-------
T ss_pred CCCcEEEEEEcCC-CC--CHHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHHc---------CCCEEEeCCC-------
Confidence 3578998888665 44 455666655433 24777666533 22333332 6666666411
Q ss_pred CCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEecc
Q 044012 80 EGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (490)
. . . -.....++.+.|++.++|+||.-.+. .-...+-+.+.-.++-++++
T Consensus 148 -~-~--------~--------r~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~~iNiHpS 197 (288)
T 3obi_A 148 -K-D--------T--------RRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHS 197 (288)
T ss_dssp -T-T--------T--------HHHHHHHHHHHHHHHTCCEEEESSCCSCCCHHHHHHTTTSEEEEEEE
T ss_pred -c-c--------c--------HHHHHHHHHHHHHhcCCCEEEhhhhhhhCCHHHHhhhcCCeEEeCcc
Confidence 0 0 0 01234567788888899999987653 34555666666667766444
No 129
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=63.63 E-value=12 Score=32.33 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=39.4
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
++.+|++.+.++..|-....-++..|..+|++|.++......+.+..
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~ 133 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVE 133 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 35689999999999999999999999999999999887555444433
No 130
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=63.54 E-value=57 Score=29.67 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=61.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcch---hhhhhhhcccccCCCceEEEEeeCCCCcCCCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNA---RRFQNAIDRDSRLGREISLRILRFPSQEAGLP 79 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 79 (490)
.+++||+++.++. || .+.+|..+..+. ..+|..+.+..-. +..++ .++.+..+|..
T Consensus 86 ~~~~ri~vl~Sg~-g~--nl~~ll~~~~~g~l~~~i~~Visn~~~a~~~~A~~---------~gIp~~~~~~~------- 146 (287)
T 3nrb_A 86 TDRKKVVIMVSKF-DH--CLGDLLYRHRLGELDMEVVGIISNHPREALSVSLV---------GDIPFHYLPVT------- 146 (287)
T ss_dssp TCCCEEEEEECSC-CH--HHHHHHHHHHHTSSCCEEEEEEESSCGGGCCCCCC---------TTSCEEECCCC-------
T ss_pred CCCcEEEEEEeCC-Cc--CHHHHHHHHHCCCCCeEEEEEEeCChHHHHHHHHH---------cCCCEEEEecc-------
Confidence 3578998888665 43 555666665543 3677777653321 22222 25666655410
Q ss_pred CCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEecc
Q 044012 80 EGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~ 146 (490)
. ..-.....++.+.|++.++|+||.-.+. .-...+-+.+.-.++-++++
T Consensus 147 ------------~------~~r~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~~iNiHpS 196 (287)
T 3nrb_A 147 ------------P------ATKAAQESQIKNIVTQSQADLIVLARYMQILSDDLSAFLSGRCINIHHS 196 (287)
T ss_dssp ------------G------GGHHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHHTTSEEEEESS
T ss_pred ------------C------cchhhHHHHHHHHHHHhCCCEEEhhhhhhhcCHHHHhhccCCeEEECcc
Confidence 0 0001234567788888899999987653 34555666666667766444
No 131
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=63.05 E-value=39 Score=33.42 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.++.+.+++.+||++|... ...-+|+.+|||++.+
T Consensus 391 ~el~~~i~~~~pDL~ig~~---~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 391 RVLLKTVDEYQADILIAGG---RNMYTALKGRVPFLDI 425 (483)
T ss_dssp HHHHHHHHHTTCSEEECCG---GGHHHHHHTTCCBCCC
T ss_pred HHHHHHHHhcCCCEEEECC---chhHHHHHcCCCEEEe
Confidence 4677778888999999863 4567899999998754
No 132
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=62.83 E-value=4.7 Score=32.78 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=26.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
++.||+++.. |++- ..+++.|.++||+|+++...
T Consensus 2 ~~~~vlI~G~---G~vG--~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGH---SILA--INTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCSCEEEECC---SHHH--HHHHHHHHHTTCCEEEEECC
T ss_pred CCCcEEEECC---CHHH--HHHHHHHHHCCCCEEEEECC
Confidence 4568888843 5544 78899999999999999874
No 133
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=62.75 E-value=52 Score=30.77 Aligned_cols=102 Identities=12% Similarity=0.134 Sum_probs=62.0
Q ss_pred cceEEEEcCCCCC--C--hHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCc
Q 044012 7 KLHVMFLPYIAPG--H--MVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGC 82 (490)
Q Consensus 7 ~~~Il~~~~~~~G--H--i~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (490)
+..|++.|..+.. . ..-+..|++.|.++|++|.++..+...+..++..... + -....
T Consensus 185 ~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~---~--~~~~~-------------- 245 (349)
T 3tov_A 185 DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQM---E--TKPIV-------------- 245 (349)
T ss_dssp CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTC---S--SCCEE--------------
T ss_pred CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhc---c--cccEE--------------
Confidence 3467777765432 2 2348999999999999999987776666555431110 0 00000
Q ss_pred cCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEeccc
Q 044012 83 ENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~ 147 (490)
+.+. ....++..+++ +.|++|+. ..+...+|..+|+|.|.++..+
T Consensus 246 --l~g~--------------~sl~e~~ali~--~a~~~i~~--DsG~~HlAaa~g~P~v~lfg~t 290 (349)
T 3tov_A 246 --ATGK--------------FQLGPLAAAMN--RCNLLITN--DSGPMHVGISQGVPIVALYGPS 290 (349)
T ss_dssp --CTTC--------------CCHHHHHHHHH--TCSEEEEE--SSHHHHHHHTTTCCEEEECSSC
T ss_pred --eeCC--------------CCHHHHHHHHH--hCCEEEEC--CCCHHHHHHhcCCCEEEEECCC
Confidence 0000 01234455555 57999864 1467788999999999986544
No 134
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=62.31 E-value=41 Score=33.64 Aligned_cols=100 Identities=14% Similarity=0.239 Sum_probs=56.1
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENL 85 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (490)
+.+|++++. .-.-...|++.|.+-|-+|..+......+...+..... ...+|. ..+..-.
T Consensus 359 ~Gkrv~i~g-----d~~~~~~la~~L~ElGm~vv~v~~~~~~~~~~~~~~~l--------l~~~~~-------~~~~~v~ 418 (519)
T 1qgu_B 359 HGKKFGLYG-----DPDFVMGLTRFLLELGCEPTVILSHNANKRWQKAMNKM--------LDASPY-------GRDSEVF 418 (519)
T ss_dssp TTCEEEEES-----CHHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHH--------HHHSTT-------CTTCEEE
T ss_pred CCCEEEEEC-----CchHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHH--------HHhcCC-------CCCCEEE
Confidence 356888874 33446678888888999998777655433322210000 000000 0000000
Q ss_pred CCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHh-------CCCeEEE
Q 044012 86 MSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEEL-------GIPRLAF 143 (490)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~l-------giP~v~~ 143 (490)
.. .-..++.+.+++.+||++|.+.. ...+|+.+ |||++.+
T Consensus 419 ~~---------------~d~~~l~~~i~~~~pDLiig~~~---~~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 419 IN---------------CDLWHFRSLMFTRQPDFMIGNSY---GKFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp ES---------------CCHHHHHHHHHHHCCSEEEECGG---GHHHHHHHHHHCGGGCCCEEEC
T ss_pred EC---------------CCHHHHHHHHhhcCCCEEEECcc---hHHHHHHhhcccccCCCCeEEe
Confidence 00 01235666677779999998853 46678888 9999875
No 135
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=62.19 E-value=13 Score=36.35 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=36.3
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARR 49 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~ 49 (490)
+..|+++..++.|-..-...||..|+++|+.|.++....++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a 142 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG 142 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh
Confidence 4556777777999999999999999999999999998776543
No 136
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=60.99 E-value=4.3 Score=37.53 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=25.9
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.++.++|||.|+-.|..| ..+|+.|+++||+|+++..
T Consensus 1 M~~~~~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr 38 (303)
T 3g0o_A 1 MSLTGTDFHVGIVGLGSMG-----MGAARSCLRAGLSTWGADL 38 (303)
T ss_dssp ------CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCCCeEEEECCCHHH-----HHHHHHHHHCCCeEEEEEC
Confidence 5666667899999665544 4689999999999998853
No 137
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=60.75 E-value=52 Score=24.86 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=22.1
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
++++||+++- .+-.-...+.+.|.+.|++|..+.
T Consensus 3 m~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~ 36 (132)
T 2rdm_A 3 LEAVTILLAD----DEAILLLDFESTLTDAGFLVTAVS 36 (132)
T ss_dssp CSSCEEEEEC----SSHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCceEEEEc----CcHHHHHHHHHHHHHcCCEEEEEC
Confidence 4567888774 344555667777777788776543
No 138
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=60.08 E-value=57 Score=31.91 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.++.+++++.+||++|.+.. ...+|+++|||++.+
T Consensus 375 ~~l~~~i~~~~pDl~ig~~~---~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 375 FDVHQWIKNEGVDLLISNTY---GKFIAREENIPFVRF 409 (458)
T ss_dssp HHHHHHHHHSCCSEEEESGG---GHHHHHHHTCCEEEC
T ss_pred HHHHHHHHhcCCCEEEeCcc---hHHHHHHcCCCEEEe
Confidence 35677788889999998853 577889999999976
No 139
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=59.88 E-value=13 Score=32.55 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=35.7
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.+++|++..-|+.|-..-++.+|..|+++|+.|.++....
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4688999999999999999999999999999998877654
No 140
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=59.84 E-value=7.3 Score=35.58 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|||++. |+.|-+- .+|++.|.++||+|+.++-
T Consensus 1 MkILVT--GatGfIG--~~L~~~L~~~G~~V~~l~R 32 (298)
T 4b4o_A 1 MRVLVG--GGTGFIG--TALTQLLNARGHEVTLVSR 32 (298)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEE--CCCCHHH--HHHHHHHHHCCCEEEEEEC
Confidence 687665 4555554 4689999999999999874
No 141
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=59.69 E-value=35 Score=29.05 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEeccc
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~~ 147 (490)
....+.+++.++|+||.| ..+..+|+.+|+|.+.+.+..
T Consensus 132 ~~~i~~l~~~G~~vvVG~---~~~~~~A~~~Gl~~vli~sg~ 170 (196)
T 2q5c_A 132 TTLISKVKTENIKIVVSG---KTVTDEAIKQGLYGETINSGE 170 (196)
T ss_dssp HHHHHHHHHTTCCEEEEC---HHHHHHHHHTTCEEEECCCCH
T ss_pred HHHHHHHHHCCCeEEECC---HHHHHHHHHcCCcEEEEecCH
Confidence 444455566899999998 346889999999999987754
No 142
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=59.44 E-value=10 Score=33.95 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=36.7
Q ss_pred CCcceEEEEcCC---CCCChHHHHHHHHHHHHCCCeEEEEeCCcchhh
Q 044012 5 NQKLHVMFLPYI---APGHMVPMVDMARLFAANGIQVTIILTTMNARR 49 (490)
Q Consensus 5 ~~~~~Il~~~~~---~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~ 49 (490)
+.+||.+|++.+ +.|--.....|+..|.+||+.||..--..+...
T Consensus 20 ~~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNv 67 (295)
T 2vo1_A 20 FQSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINI 67 (295)
T ss_dssp -CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCC
T ss_pred cccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceec
Confidence 567899999976 567888899999999999999999986555443
No 143
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=58.87 E-value=14 Score=28.24 Aligned_cols=43 Identities=5% Similarity=0.050 Sum_probs=29.8
Q ss_pred ceEEEEcCC---CCCChHHHHHHHHHHHHC-CC-eEEEEeCCcchhhh
Q 044012 8 LHVMFLPYI---APGHMVPMVDMARLFAAN-GI-QVTIILTTMNARRF 50 (490)
Q Consensus 8 ~~Il~~~~~---~~GHi~p~l~LA~~L~~r-Gh-~Vt~~~~~~~~~~~ 50 (490)
+|++|+-.. +.......+.+|..+.+. || +|+++...+.....
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dgV~~~ 49 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAG 49 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchHHHHH
Confidence 455554433 334566689999999999 99 99999886544443
No 144
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=58.49 E-value=15 Score=32.89 Aligned_cols=41 Identities=20% Similarity=0.051 Sum_probs=36.2
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
++.+|++.+.++..|-....-++..|..+|++|.++.....
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp 162 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVP 162 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECC
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 46799999999999999999999999999999998875433
No 145
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=58.14 E-value=39 Score=33.52 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 106 PEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
.++.+.+++.+||++|... ...-+|+.+|||++.+
T Consensus 407 ~el~~~i~~~~pDL~ig~~---~~~~ia~k~gIP~~~~ 441 (492)
T 3u7q_A 407 YEFEEFVKRIKPDLIGSGI---KEKFIFQKMGIPFREM 441 (492)
T ss_dssp HHHHHHHHHHCCSEEEECH---HHHHHHHHTTCCEEES
T ss_pred HHHHHHHHhcCCcEEEeCc---chhHHHHHcCCCEEec
Confidence 3566777778999999863 4567999999999864
No 146
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=57.65 E-value=42 Score=31.03 Aligned_cols=34 Identities=9% Similarity=0.137 Sum_probs=20.7
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+++|+|++. |+.|.+- ..|++.|.++|+++.+++
T Consensus 22 ~~~~~vlVt--GatG~iG--~~l~~~L~~~g~~~~v~~ 55 (346)
T 4egb_A 22 SNAMNILVT--GGAGFIG--SNFVHYMLQSYETYKIIN 55 (346)
T ss_dssp --CEEEEEE--TTTSHHH--HHHHHHHHHHCTTEEEEE
T ss_pred cCCCeEEEE--CCccHHH--HHHHHHHHhhCCCcEEEE
Confidence 456776665 4555443 478999999994444433
No 147
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=57.60 E-value=18 Score=37.51 Aligned_cols=41 Identities=15% Similarity=-0.031 Sum_probs=28.2
Q ss_pred HHHHHhhcCCCcEEEEcCCC-cchHHHHHHhCCCeEEEeccc
Q 044012 107 EIEKLFREQNPNCIVSDNLF-PWTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~-~~~~~~A~~lgiP~v~~~~~~ 147 (490)
++.+.|++.+||+||+-.+. .-...+-+.....++-++++.
T Consensus 66 ~~~~~l~~~~~d~iv~~~~~~il~~~~l~~~~~~~iNiH~sl 107 (660)
T 1z7e_A 66 LWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSL 107 (660)
T ss_dssp HHHHHHHHHCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSS
T ss_pred HHHHHHHhcCCCEEEEcCcccccCHHHHhcCCCCeEEecCCc
Confidence 45666777799999976553 345555566667778887763
No 148
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=56.92 E-value=12 Score=33.75 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=25.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
++|||++.. + |-+ -..|++.|.++||+|+.+.-.
T Consensus 2 ~~~~ilVtG--a-G~i--G~~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 2 SLSKILIAG--C-GDL--GLELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp CCCCEEEEC--C-SHH--HHHHHHHHHHTTCCEEEEECT
T ss_pred CCCcEEEEC--C-CHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 457888773 4 633 457899999999999999753
No 149
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=56.87 E-value=71 Score=25.27 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=28.8
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
..+++++..+. =+.|++.+++.|.++|.+|+++ ...
T Consensus 18 ~~~~llIaGG~--GiaPl~sm~~~l~~~~~~v~l~-g~R 53 (142)
T 3lyu_A 18 FGKILAIGAYT--GIVEVYPIAKAWQEIGNDVTTL-HVT 53 (142)
T ss_dssp CSEEEEEEETT--HHHHHHHHHHHHHHTTCEEEEE-EEE
T ss_pred CCeEEEEECcC--cHHHHHHHHHHHHhcCCcEEEE-EeC
Confidence 35788877443 3899999999999999999998 543
No 150
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=56.84 E-value=87 Score=28.82 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=59.0
Q ss_pred cceEEEEcCCCCC---ChH--HHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCC--ceEEEEeeCCCCcCCCC
Q 044012 7 KLHVMFLPYIAPG---HMV--PMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGR--EISLRILRFPSQEAGLP 79 (490)
Q Consensus 7 ~~~Il~~~~~~~G---Hi~--p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~ 79 (490)
+..|++.|....+ .+. -+..+++.|.++|++|.++..+...+..+...... +. ......+
T Consensus 180 ~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~---~~~~~~~~~~l---------- 246 (348)
T 1psw_A 180 RPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAAL---NTEQQAWCRNL---------- 246 (348)
T ss_dssp SCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTS---CHHHHTTEEEC----------
T ss_pred CcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhh---hhccccceEec----------
Confidence 3467777755222 232 68899999999999999887665544443321000 00 0001111
Q ss_pred CCccCCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecc
Q 044012 80 EGCENLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (490)
.+. .-..++..+++ +.|++|+.. .+...+|..+|+|.|.++..
T Consensus 247 ------~g~--------------~sl~e~~ali~--~a~l~I~~D--sg~~HlAaa~g~P~v~lfg~ 289 (348)
T 1psw_A 247 ------AGE--------------TQLDQAVILIA--ACKAIVTND--SGLMHVAAALNRPLVALYGP 289 (348)
T ss_dssp ------TTT--------------SCHHHHHHHHH--TSSEEEEES--SHHHHHHHHTTCCEEEEESS
T ss_pred ------cCc--------------CCHHHHHHHHH--hCCEEEecC--CHHHHHHHHcCCCEEEEECC
Confidence 000 01234445555 579999642 46677899999999998543
No 151
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=56.55 E-value=21 Score=27.00 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=28.2
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-------CCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-------GIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-------giP~v~~~~~~~ 148 (490)
+..+.+++.+||+||.|...+ .+..+.+.+ ++|.|+++....
T Consensus 37 ~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~ 87 (122)
T 3gl9_A 37 IALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGG 87 (122)
T ss_dssp HHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCS
T ss_pred HHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCc
Confidence 344456677899999998655 355555543 588888876543
No 152
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=56.33 E-value=22 Score=31.60 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=29.0
Q ss_pred CcceEEEEcCCCC----------CC-hHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAP----------GH-MVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~----------GH-i~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
.|+||+++-.... |- ..=+..-...|.+.|++|+++++.
T Consensus 8 ~mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~ 57 (247)
T 3n7t_A 8 LPRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASET 57 (247)
T ss_dssp CCSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3678988876632 22 333777788999999999999973
No 153
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=56.26 E-value=9.9 Score=35.49 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=29.2
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.++||.|+-.++.| |-.+|+.|+++||+|+..=.
T Consensus 3 ~~~~i~~iGiGg~G----ms~~A~~L~~~G~~V~~~D~ 36 (326)
T 3eag_A 3 AMKHIHIIGIGGTF----MGGLAAIAKEAGFEVSGCDA 36 (326)
T ss_dssp CCCEEEEESCCSHH----HHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEEEEECHHH----HHHHHHHHHhCCCEEEEEcC
Confidence 46899999998877 66799999999999998754
No 154
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=56.18 E-value=8.3 Score=36.14 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=27.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
++|||+|+-.|+.| ..+|..|++.||+|+++...
T Consensus 2 ~~mkI~IiGaG~~G-----~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 2 SLTRICIVGAGAVG-----GYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCCCEEEESCCHHH-----HHHHHHHHHTTCCEEEECCH
T ss_pred CCCEEEEECcCHHH-----HHHHHHHHHCCCEEEEEECh
Confidence 35899999777666 46789999999999999864
No 155
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=55.82 E-value=67 Score=24.59 Aligned_cols=38 Identities=5% Similarity=0.101 Sum_probs=19.9
Q ss_pred CCCC-CCcceEEEEcCCCCCChHHHHHHHHHHHH-CCCe-EEEEe
Q 044012 1 MVSE-NQKLHVMFLPYIAPGHMVPMVDMARLFAA-NGIQ-VTIIL 42 (490)
Q Consensus 1 m~~~-~~~~~Il~~~~~~~GHi~p~l~LA~~L~~-rGh~-Vt~~~ 42 (490)
|.+. +++++|+++- .+-.-...|.+.|.+ .|++ |..+.
T Consensus 1 M~~~~~~~~~iLivd----d~~~~~~~l~~~L~~~~~~~~v~~~~ 41 (143)
T 3cnb_A 1 MSLNVKNDFSILIIE----DDKEFADMLTQFLENLFPYAKIKIAY 41 (143)
T ss_dssp --------CEEEEEC----SCHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred CcccccCCceEEEEE----CCHHHHHHHHHHHHhccCccEEEEEC
Confidence 4443 4567787775 444555667777777 7887 54444
No 156
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=54.65 E-value=71 Score=24.55 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=19.6
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+++||+++- .+-.-...|.+.|.+.|++|..+.
T Consensus 4 ~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~ 36 (140)
T 3h5i_A 4 KDKKILIVE----DSKFQAKTIANILNKYGYTVEIAL 36 (140)
T ss_dssp --CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCcEEEEEe----CCHHHHHHHHHHHHHcCCEEEEec
Confidence 456777764 344555666777777777766443
No 157
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=54.36 E-value=19 Score=33.19 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
|||+++-.|+.|- .+|..|++.||+|+++.... .+.+.+.
T Consensus 3 mkI~IiGaGaiG~-----~~a~~L~~~g~~V~~~~r~~-~~~i~~~ 42 (312)
T 3hn2_A 3 LRIAIVGAGALGL-----YYGALLQRSGEDVHFLLRRD-YEAIAGN 42 (312)
T ss_dssp -CEEEECCSTTHH-----HHHHHHHHTSCCEEEECSTT-HHHHHHT
T ss_pred CEEEEECcCHHHH-----HHHHHHHHCCCeEEEEEcCc-HHHHHhC
Confidence 6999998888884 56889999999999998765 3444443
No 158
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=53.87 E-value=21 Score=31.37 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCc
Q 044012 23 PMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 23 p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.-.+||++|+++|++|+++..+.
T Consensus 31 mG~aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 31 LGKIITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc
Confidence 34678999999999999998753
No 159
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=53.45 E-value=20 Score=32.64 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=24.3
Q ss_pred CCcceEEEEc-CCCCCChHH--HHHHHHHHHHCCCeEEEEe
Q 044012 5 NQKLHVMFLP-YIAPGHMVP--MVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 5 ~~~~~Il~~~-~~~~GHi~p--~l~LA~~L~~rGh~Vt~~~ 42 (490)
++.||||++- .|-...++- .-...+.|.++||+|+++-
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5678887664 555444444 2346777888999999873
No 160
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=53.43 E-value=22 Score=30.91 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=38.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRF 50 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (490)
.++.||++.+.++-.|-....-++..|..+|++|+........+.+
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~i 135 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENV 135 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHH
Confidence 3467999999999999999999999999999999998865444443
No 161
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=53.28 E-value=92 Score=29.37 Aligned_cols=40 Identities=8% Similarity=-0.061 Sum_probs=33.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNAR 48 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (490)
-+++..-++.|-..-.+.++..++.+|..|.|+..+...+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~ 115 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD 115 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh
Confidence 4566677899999999999999999999999999876443
No 162
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=53.25 E-value=7.6 Score=30.87 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=25.7
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+|+||+++.. |.+ -..+|+.|.++||+|+++-..
T Consensus 5 ~~~~v~I~G~---G~i--G~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 5 GRYEYIVIGS---EAA--GVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp -CCSEEEECC---SHH--HHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEEECC---CHH--HHHHHHHHHHCCCeEEEEECC
Confidence 4568888864 443 467899999999999988753
No 163
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=53.11 E-value=14 Score=33.50 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=31.1
Q ss_pred CcceEEEEc--CCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 6 QKLHVMFLP--YIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 6 ~~~~Il~~~--~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+|+|++.+. -|+.|-..-...||..|+++|++|.++=...
T Consensus 2 ~M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 2 AETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp --CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 456666555 4578999999999999999999999886655
No 164
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=52.93 E-value=14 Score=29.91 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=26.4
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
...++|+++-. |.+- ..+++.|.++|++|+++...
T Consensus 17 ~~~~~v~IiG~---G~iG--~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 17 QKSKYIVIFGC---GRLG--SLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCCCEEEEECC---SHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred cCCCcEEEECC---CHHH--HHHHHHHHhCCCeEEEEECC
Confidence 45689998854 4433 56789999999999998753
No 165
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=52.82 E-value=17 Score=35.55 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=37.1
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (490)
.-=+++...|+.|-..-++.+|...+.+|..|.+++.+...+.+.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~ 241 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENI 241 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHH
Confidence 344677778999999999999999999999999999887654333
No 166
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=52.48 E-value=12 Score=29.14 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=26.0
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh---CCCeEEEe
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL---GIPRLAFT 144 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l---giP~v~~~ 144 (490)
+-.+.+++.+||+||.|...+ -+..+++.+ ++|.|+++
T Consensus 44 eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 44 EALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 334556678999999998766 355555544 78877654
No 167
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=52.24 E-value=29 Score=26.14 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=29.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+|+||++++..|.|--.-.-.+=+.+.++|.++.+-..
T Consensus 2 ~mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~ 39 (106)
T 1e2b_A 2 EKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAF 39 (106)
T ss_dssp CCEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred CCcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 46799999988777766666888888899988766554
No 168
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=52.17 E-value=17 Score=29.32 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=33.0
Q ss_pred eE-EEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 9 HV-MFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 9 ~I-l~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
|+ +++..+..-.+++.+.+|...++.|++|+++.+-.....+.+
T Consensus 9 kl~II~~sg~~d~~~~a~~lA~~Aaa~g~eV~iF~t~~gv~~l~k 53 (144)
T 2qs7_A 9 KLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQAITK 53 (144)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTBH
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHHHHcCCcEEEEEehHHHHHHhc
Confidence 44 444455667788899999999999999999998665554444
No 169
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=51.87 E-value=14 Score=33.43 Aligned_cols=52 Identities=10% Similarity=0.117 Sum_probs=38.1
Q ss_pred cCCceeecccCChhHHHHHHHh------CCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHH
Q 044012 362 HQAIGGFLTHCGWNSILEGVSA------GVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIK 435 (490)
Q Consensus 362 ~~~~~~~ItHGG~~s~~eal~~------GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~ 435 (490)
.+++ +|+=||=||+.+++.. ++|++.+|.. .+ |... .+.++++.
T Consensus 35 ~~D~--vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~G------------~l--gfl~--------------~~~~~~~~ 84 (272)
T 2i2c_A 35 EPEI--VISIGGDGTFLSAFHQYEERLDEIAFIGIHTG------------HL--GFYA--------------DWRPAEAD 84 (272)
T ss_dssp SCSE--EEEEESHHHHHHHHHHTGGGTTTCEEEEEESS------------SC--CSSC--------------CBCGGGHH
T ss_pred CCCE--EEEEcCcHHHHHHHHHHhhcCCCCCEEEEeCC------------CC--CcCC--------------cCCHHHHH
Confidence 4566 9999999999999875 8999999741 11 2111 35577888
Q ss_pred HHHHHHhc
Q 044012 436 NAICVVMD 443 (490)
Q Consensus 436 ~~i~~~l~ 443 (490)
++++++++
T Consensus 85 ~~l~~l~~ 92 (272)
T 2i2c_A 85 KLVKLLAK 92 (272)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88888886
No 170
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=51.67 E-value=8 Score=35.76 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=26.6
Q ss_pred CCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 4 ENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 4 ~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+.+++||.|+-.+..| ..+|+.|+++||+|+++-
T Consensus 6 ~~~~~~IgiIG~G~mG-----~~~A~~l~~~G~~V~~~d 39 (306)
T 3l6d_A 6 ESFEFDVSVIGLGAMG-----TIMAQVLLKQGKRVAIWN 39 (306)
T ss_dssp CCCSCSEEEECCSHHH-----HHHHHHHHHTTCCEEEEC
T ss_pred ccCCCeEEEECCCHHH-----HHHHHHHHHCCCEEEEEe
Confidence 3567899999665444 478999999999998874
No 171
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=51.48 E-value=8.8 Score=33.83 Aligned_cols=38 Identities=5% Similarity=0.026 Sum_probs=33.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
|||+|..-|+-|-..-...||..|+++|++|.++=...
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 68999777788999999999999999999999886544
No 172
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=51.37 E-value=8.3 Score=30.30 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=24.3
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+.|||+++-. |.+- ..+|+.|.++||+|+++..
T Consensus 3 ~~m~i~IiG~---G~iG--~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 3 HGMYIIIAGI---GRVG--YTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp --CEEEEECC---SHHH--HHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECC---CHHH--HHHHHHHHhCCCeEEEEEC
Confidence 3579988843 5554 3678999999999998875
No 173
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=51.33 E-value=7.5 Score=33.89 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=27.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
++||||.|+-.|..| ..+|+.|++.||+|+++...
T Consensus 21 m~mmkI~IIG~G~mG-----~~la~~l~~~g~~V~~v~~r 55 (220)
T 4huj_A 21 QSMTTYAIIGAGAIG-----SALAERFTAAQIPAIIANSR 55 (220)
T ss_dssp GGSCCEEEEECHHHH-----HHHHHHHHHTTCCEEEECTT
T ss_pred hcCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 457899998755444 46899999999999986543
No 174
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=51.20 E-value=43 Score=33.60 Aligned_cols=36 Identities=8% Similarity=0.180 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 105 RPEIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 105 ~~~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
..++.+++++.+||++|... ...-+|+.+|||++.+
T Consensus 445 ~~el~~~i~~~~pDl~ig~~---~~~~~a~k~gIP~~~~ 480 (533)
T 1mio_A 445 HHDMEVVLEKLKPDMFFAGI---KEKFVIQKGGVLSKQL 480 (533)
T ss_dssp HHHHHHHHHHHCCSEEEECH---HHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHhcCCCEEEccc---chhHHHHhcCCCEEEe
Confidence 35677888888999999763 3567899999999864
No 175
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=51.14 E-value=9.3 Score=35.98 Aligned_cols=34 Identities=18% Similarity=0.026 Sum_probs=25.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|++|||+|+-.|..| ..+|..|+++||+|+++..
T Consensus 2 m~~mki~iiG~G~~G-----~~~a~~L~~~g~~V~~~~r 35 (359)
T 1bg6_A 2 IESKTYAVLGLGNGG-----HAFAAYLALKGQSVLAWDI 35 (359)
T ss_dssp --CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCcCeEEEECCCHHH-----HHHHHHHHhCCCEEEEEeC
Confidence 346899999765545 4578889999999998864
No 176
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=51.03 E-value=9.3 Score=35.15 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=25.1
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.||||+|+-.|..| ..+|..|+++||+|+++..
T Consensus 2 ~~m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 2 NAMKIAIAGAGAMG-----SRLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp --CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHhCCCcEEEEEC
Confidence 35899999765545 4678999999999999865
No 177
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=50.94 E-value=93 Score=29.31 Aligned_cols=36 Identities=17% Similarity=0.009 Sum_probs=27.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.+++||+++..+ .....+++++.++|++|..+....
T Consensus 9 ~~~~~ili~g~g-----~~~~~~~~a~~~~G~~v~~~~~~~ 44 (391)
T 1kjq_A 9 PAATRVMLLGSG-----ELGKEVAIECQRLGVEVIAVDRYA 44 (391)
T ss_dssp TTCCEEEEESCS-----HHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHcCCEEEEEECCC
Confidence 356899998543 235678999999999998887643
No 178
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=50.75 E-value=20 Score=30.30 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=27.1
Q ss_pred CCcceEEEEcCCCCCChHHHH-HHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMV-DMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l-~LA~~L~~rGh~Vt~~~~ 43 (490)
|+||||+++-....|+..-+. .+++.|.+.|++|.++--
T Consensus 3 M~M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l 42 (200)
T 2a5l_A 3 MSSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTV 42 (200)
T ss_dssp --CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBC
T ss_pred CCcceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 346788888766677766544 467777778999988764
No 179
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=50.44 E-value=23 Score=28.02 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHhhcCCCcEEEEcCCCc--chHHHHHHh-------CCCeEEEecccHH
Q 044012 110 KLFREQNPNCIVSDNLFP--WTVSIAEEL-------GIPRLAFTGSGFF 149 (490)
Q Consensus 110 ~~l~~~~pD~VI~D~~~~--~~~~~A~~l-------giP~v~~~~~~~~ 149 (490)
+.+++.+||+||.|...+ -+..+++.+ .+|.|.++.....
T Consensus 51 ~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~ 99 (134)
T 3to5_A 51 PMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKR 99 (134)
T ss_dssp HHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCH
T ss_pred HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCH
Confidence 344556899999998776 466666654 5898888765533
No 180
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=50.35 E-value=41 Score=32.68 Aligned_cols=35 Identities=9% Similarity=0.126 Sum_probs=25.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|.+.||+++. .|. -.+.+++++++.|++|+++.+.
T Consensus 4 m~~~kiLI~g---~g~--~a~~i~~aa~~~G~~~v~v~~~ 38 (446)
T 3ouz_A 4 MEIKSILIAN---RGE--IALRALRTIKEMGKKAICVYSE 38 (446)
T ss_dssp TCCCEEEECC---CHH--HHHHHHHHHHHTTCEEEEEEEG
T ss_pred cccceEEEEC---CCH--HHHHHHHHHHHcCCEEEEEEcC
Confidence 3456787754 232 4578999999999999988654
No 181
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=49.91 E-value=25 Score=31.14 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=27.9
Q ss_pred cceEEEEcCCCCC----------Ch-HHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPG----------HM-VPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~G----------Hi-~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|+||+|+-....+ -. .=+......|.+.|++|+++++.
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~ 51 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSET 51 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789888765322 22 33677788899999999999974
No 182
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=49.15 E-value=20 Score=33.27 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
|||+++-.|+.| ..+|..|++.||+|+++.... .+.+.+.
T Consensus 3 mkI~IiGaGaiG-----~~~a~~L~~~g~~V~~~~r~~-~~~i~~~ 42 (320)
T 3i83_A 3 LNILVIGTGAIG-----SFYGALLAKTGHCVSVVSRSD-YETVKAK 42 (320)
T ss_dssp CEEEEESCCHHH-----HHHHHHHHHTTCEEEEECSTT-HHHHHHH
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCeEEEEeCCh-HHHHHhC
Confidence 699999877766 457888999999999998765 3444443
No 183
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=48.16 E-value=48 Score=32.29 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=35.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHH-CCCeEEEEeCCcchhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAA-NGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~ 51 (490)
-=+++...|+.|-..-++.+|...+. .|..|.+++.+...+.+.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~ 245 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLT 245 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 34667778899999999999999987 489999999877655333
No 184
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=48.02 E-value=13 Score=34.35 Aligned_cols=39 Identities=15% Similarity=0.036 Sum_probs=28.4
Q ss_pred cce-EEEEcCCCCCCh--------------HHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLH-VMFLPYIAPGHM--------------VPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~-Il~~~~~~~GHi--------------~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
..| |++.+.|++=.+ ..-.+||+++.++|++|+++..+.
T Consensus 36 gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~ 89 (313)
T 1p9o_A 36 GRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR 89 (313)
T ss_dssp TCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCC
Confidence 356 566555564444 255689999999999999999754
No 185
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=47.93 E-value=22 Score=33.15 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCCh
Q 044012 295 SKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGW 374 (490)
Q Consensus 295 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~ 374 (490)
+.+-...+.+++.....+.||.+.+. ..-.++.+++++..+-+++.. ||-+...
T Consensus 63 d~~Ra~dL~~a~~Dp~i~aI~~~rGG------------------------~g~~rlL~~lD~~~i~~~PK~--~~GySDi 116 (331)
T 4e5s_A 63 ISSRVQDLHEAFRDPNVKAILTTLGG------------------------YNSNGLLKYLDYDLIRENPKF--FCGYSDI 116 (331)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEESCCC------------------------SCGGGGGGGCCHHHHHTSCCE--EEECGGG
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcccc------------------------ccHHHHHhhcChhHHHhCCeE--EEEecch
Confidence 44557778899998889999988776 112345566666666666766 8888888
Q ss_pred hHHHHHHH--hCCcEeeccC
Q 044012 375 NSILEGVS--AGVPMVTWPV 392 (490)
Q Consensus 375 ~s~~eal~--~GvP~l~~P~ 392 (490)
..++-+++ .|+..+-=|.
T Consensus 117 TaL~~al~~~~G~~t~hGp~ 136 (331)
T 4e5s_A 117 TALNNAIYTKTGLVTYSGPH 136 (331)
T ss_dssp HHHHHHHHHHHCBCEEECCC
T ss_pred HHHHHHHHHhhCCcEEEccc
Confidence 88888877 5888777665
No 186
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=47.64 E-value=16 Score=31.46 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=25.1
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
||||++. |+.|.+- ..|++.|.++||+|+.+.-.
T Consensus 4 m~~ilIt--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 4 VKKIVLI--GASGFVG--SALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CCEEEEE--TCCHHHH--HHHHHHHHTTTCEEEEECSC
T ss_pred CCEEEEE--cCCchHH--HHHHHHHHHCCCEEEEEEcC
Confidence 5777765 4444443 57899999999999998753
No 187
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=47.04 E-value=15 Score=33.62 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=26.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+||||.|+-.+..|. .+|+.|+++||+|+++..
T Consensus 2 ~m~~I~iiG~G~mG~-----~~a~~l~~~G~~V~~~d~ 34 (302)
T 2h78_A 2 HMKQIAFIGLGHMGA-----PMATNLLKAGYLLNVFDL 34 (302)
T ss_dssp -CCEEEEECCSTTHH-----HHHHHHHHTTCEEEEECS
T ss_pred CCCEEEEEeecHHHH-----HHHHHHHhCCCeEEEEcC
Confidence 578999998776664 678999999999998853
No 188
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=46.98 E-value=15 Score=34.11 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
..+|||+|+-.|+.| ..+|..|++.||+|+++..+...+.+.+
T Consensus 17 ~~~~kI~IiGaGa~G-----~~~a~~L~~~G~~V~l~~~~~~~~~i~~ 59 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVG-----CYYGGMLARAGHEVILIARPQHVQAIEA 59 (318)
T ss_dssp ---CEEEEESCSHHH-----HHHHHHHHHTTCEEEEECCHHHHHHHHH
T ss_pred ccCCcEEEECcCHHH-----HHHHHHHHHCCCeEEEEEcHhHHHHHHh
Confidence 357899999877766 5678899999999999943333344443
No 189
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=46.94 E-value=1.4e+02 Score=25.80 Aligned_cols=157 Identities=11% Similarity=0.077 Sum_probs=81.1
Q ss_pred cccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEe
Q 044012 271 CLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFII 350 (490)
Q Consensus 271 ~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~ 350 (490)
+.-|++-. .+.++.|..|. .-...++.|.+.|..+.++-... .+.+..... ..++..
T Consensus 23 ~Pifl~L~-gk~VLVVGgG~-------va~~ka~~Ll~~GA~VtVvap~~-------------~~~l~~l~~--~~~i~~ 79 (223)
T 3dfz_A 23 YTVMLDLK-GRSVLVVGGGT-------IATRRIKGFLQEGAAITVVAPTV-------------SAEINEWEA--KGQLRV 79 (223)
T ss_dssp CEEEECCT-TCCEEEECCSH-------HHHHHHHHHGGGCCCEEEECSSC-------------CHHHHHHHH--TTSCEE
T ss_pred cccEEEcC-CCEEEEECCCH-------HHHHHHHHHHHCCCEEEEECCCC-------------CHHHHHHHH--cCCcEE
Confidence 44566665 56688887773 34455566677788877664322 112222222 223443
Q ss_pred eccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCc-ccccchH-----HHHHHhhccceeeccccccccccC
Q 044012 351 KGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVF-AEQFNNE-----KLVTQVLKFGLPVGNEIWKIWATQ 424 (490)
Q Consensus 351 ~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~-~DQ~~na-----~rv~e~~G~G~~l~~~~~~~~~~~ 424 (490)
....-....|..+++ +|.--|.-.+.+.++.-.- ..+|+. .|.+..+ ..+ ++-++-+.+... |
T Consensus 80 i~~~~~~~dL~~adL--VIaAT~d~~~N~~I~~~ak-~gi~VNvvD~p~~~~f~~Paiv-~rg~l~iaIST~-----G-- 148 (223)
T 3dfz_A 80 KRKKVGEEDLLNVFF--IVVATNDQAVNKFVKQHIK-NDQLVNMASSFSDGNIQIPAQF-SRGRLSLAISTD-----G-- 148 (223)
T ss_dssp ECSCCCGGGSSSCSE--EEECCCCTHHHHHHHHHSC-TTCEEEC-----CCSEECCEEE-EETTEEEEEECT-----T--
T ss_pred EECCCCHhHhCCCCE--EEECCCCHHHHHHHHHHHh-CCCEEEEeCCcccCeEEEeeEE-EeCCEEEEEECC-----C--
Confidence 332223445677777 8877777666665554222 333332 3444333 233 233333444332 0
Q ss_pred CCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Q 044012 425 DSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKK 465 (490)
Q Consensus 425 ~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~ 465 (490)
..-.-+..|++.|.+++. .+ ...+-+.+.++++++++
T Consensus 149 -~sP~la~~iR~~ie~~lp--~~-~~~~~~~~~~~R~~vk~ 185 (223)
T 3dfz_A 149 -ASPLLTKRIKEDLSSNYD--ES-YTQYTQFLYECRVLIHR 185 (223)
T ss_dssp -SCHHHHHHHHHHHHHHSC--TH-HHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHcc--HH-HHHHHHHHHHHHHHHHH
Confidence 012334567888887874 33 34677778888888773
No 190
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=46.81 E-value=13 Score=33.43 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=38.8
Q ss_pred cCCceeecccCChhHHHHHHHh---CCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHH
Q 044012 362 HQAIGGFLTHCGWNSILEGVSA---GVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAI 438 (490)
Q Consensus 362 ~~~~~~~ItHGG~~s~~eal~~---GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i 438 (490)
.+++ +|+=||=||+.+++.. ++|+++++. + .. |... .+.++++.+++
T Consensus 41 ~~D~--vv~~GGDGTll~~a~~~~~~~PilGIn~-G-----------~~--Gfl~--------------~~~~~~~~~al 90 (258)
T 1yt5_A 41 TADL--IVVVGGDGTVLKAAKKAADGTPMVGFKA-G-----------RL--GFLT--------------SYTLDEIDRFL 90 (258)
T ss_dssp CCSE--EEEEECHHHHHHHHTTBCTTCEEEEEES-S-----------SC--CSSC--------------CBCGGGHHHHH
T ss_pred CCCE--EEEEeCcHHHHHHHHHhCCCCCEEEEEC-C-----------CC--CccC--------------cCCHHHHHHHH
Confidence 4566 9999999999999887 889988862 1 11 2222 35678889999
Q ss_pred HHHhc
Q 044012 439 CVVMD 443 (490)
Q Consensus 439 ~~~l~ 443 (490)
+++++
T Consensus 91 ~~i~~ 95 (258)
T 1yt5_A 91 EDLRN 95 (258)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88887
No 191
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=46.67 E-value=25 Score=27.54 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=26.3
Q ss_pred HHHHhhcCCCcEEEEcCCCc--chHHHHHHh---------CCCeEEEeccc
Q 044012 108 IEKLFREQNPNCIVSDNLFP--WTVSIAEEL---------GIPRLAFTGSG 147 (490)
Q Consensus 108 l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l---------giP~v~~~~~~ 147 (490)
..+.++..+||+||.|...+ .+..+.+.+ .+|.|+++...
T Consensus 50 al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~ 100 (143)
T 3m6m_D 50 VLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADV 100 (143)
T ss_dssp HHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCC
T ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCC
Confidence 34445567899999997655 355555544 27888876653
No 192
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=46.65 E-value=18 Score=35.26 Aligned_cols=26 Identities=4% Similarity=0.046 Sum_probs=20.0
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGI 36 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh 36 (490)
.||||+++..+++ -.+||+.|++.+.
T Consensus 2 ~~mkvlviG~ggr-----e~ala~~l~~s~~ 27 (431)
T 3mjf_A 2 NAMNILIIGNGGR-----EHALGWKAAQSPL 27 (431)
T ss_dssp -CEEEEEEECSHH-----HHHHHHHHTTCTT
T ss_pred CCcEEEEECCCHH-----HHHHHHHHHhCCC
Confidence 4799999987753 4578999988865
No 193
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=46.08 E-value=97 Score=28.02 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=33.2
Q ss_pred hHHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEe
Q 044012 104 LRPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFT 144 (490)
Q Consensus 104 ~~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~ 144 (490)
...++.+.+++.+..+|+++..+. .+..+|+..|++.+.+.
T Consensus 216 ~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l~ 258 (286)
T 3gi1_A 216 QLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLS 258 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEEEec
Confidence 346778888889999999998666 46778999999988753
No 194
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=45.98 E-value=20 Score=30.25 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=27.0
Q ss_pred CcceEEEEcCCCCCChHHHH-HHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMV-DMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l-~LA~~L~~rGh~Vt~~~~ 43 (490)
+||||+++-.. .|+..-+. .+++.|.+.|++|.++--
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l 40 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRV 40 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEeh
Confidence 46899888877 88766544 456667778999988764
No 195
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.86 E-value=35 Score=25.57 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=27.3
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHH----hCCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEE----LGIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~----lgiP~v~~~~~~~ 148 (490)
+..+.+++.+||+||.|...+ .+..+.+. .++|.|.++....
T Consensus 37 ~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~ 84 (120)
T 3f6p_A 37 EAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDS 84 (120)
T ss_dssp HHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSC
T ss_pred HHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCC
Confidence 444556677899999998655 24444433 3688888766543
No 196
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=45.73 E-value=8.1 Score=36.69 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=26.9
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
++|+||.|+-.|..| ..+|..|+++||+|+++...
T Consensus 13 m~M~kI~iIG~G~mG-----~~la~~L~~~G~~V~~~~r~ 47 (366)
T 1evy_A 13 LYLNKAVVFGSGAFG-----TALAMVLSKKCREVCVWHMN 47 (366)
T ss_dssp CCEEEEEEECCSHHH-----HHHHHHHTTTEEEEEEECSC
T ss_pred hccCeEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 344499999876555 46789999999999988653
No 197
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=45.60 E-value=36 Score=26.24 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=26.3
Q ss_pred HHHHhhcCCCcEEEEcCCCc--chHHHHHHh-------CCCeEEEeccc
Q 044012 108 IEKLFREQNPNCIVSDNLFP--WTVSIAEEL-------GIPRLAFTGSG 147 (490)
Q Consensus 108 l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 147 (490)
..+.+++.+||+||.|...+ .+..+.+.+ .+|.|+++...
T Consensus 40 al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 40 ALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 33445567899999998655 344444433 57888876654
No 198
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=45.55 E-value=1.9e+02 Score=27.55 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=26.2
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.++||+++..+ .....+++++.++|++|..+....
T Consensus 18 ~~~~ili~g~g-----~~g~~~~~a~~~~G~~v~~v~~~~ 52 (433)
T 2dwc_A 18 SAQKILLLGSG-----ELGKEIAIEAQRLGVEVVAVDRYA 52 (433)
T ss_dssp TCCEEEEESCS-----HHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEECCC
Confidence 35799998542 245678899999999998887643
No 199
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=45.28 E-value=8.9 Score=35.37 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC-----C-CeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN-----G-IQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r-----G-h~Vt~~~~ 43 (490)
.++|||+|+-.|..|. .+|..|+++ | |+|+++..
T Consensus 6 ~~~m~I~iiG~G~mG~-----~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 6 QQPIKIAVFGLGGVGG-----YYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp -CCEEEEEECCSHHHH-----HHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCCEEEEECcCHHHH-----HHHHHHHhCccccCCCCCEEEEEc
Confidence 4558999997766663 568888888 9 99999875
No 200
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=45.16 E-value=19 Score=32.89 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=24.5
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.+..++++|++. |+.|.+ -..|++.|.++||+|+.+.-
T Consensus 1 M~~~~~~~~vlVt--GatG~i--G~~l~~~L~~~g~~V~~~~r 39 (321)
T 3vps_A 1 MQRNTLKHRILIT--GGAGFI--GGHLARALVASGEEVTVLDD 39 (321)
T ss_dssp ------CCEEEEE--TTTSHH--HHHHHHHHHHTTCCEEEECC
T ss_pred CCcccCCCeEEEE--CCCChH--HHHHHHHHHHCCCEEEEEec
Confidence 4444456777765 444544 34789999999999999875
No 201
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=44.67 E-value=90 Score=30.28 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=25.1
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~ 43 (490)
++|||+++..++ ...+++..|+++ |++++++.+
T Consensus 20 ~~~~iliiG~g~-----r~~a~a~~~~~~~g~~~v~~~~ 53 (451)
T 2yrx_A 20 SHMNVLVIGRGG-----REHAIAWKAAQSPLVGKLYVAP 53 (451)
T ss_dssp SSEEEEEEECSH-----HHHHHHHHHHTCTTEEEEEEEE
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHhcCCCCEEEEEC
Confidence 468999998763 467888888765 888877765
No 202
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=44.59 E-value=23 Score=32.77 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=27.5
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.++|||.|+-.|..| ..+|+.|+++||+|+++..
T Consensus 29 ~~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr 62 (320)
T 4dll_A 29 PYARKITFLGTGSMG-----LPMARRLCEAGYALQVWNR 62 (320)
T ss_dssp CCCSEEEEECCTTTH-----HHHHHHHHHTTCEEEEECS
T ss_pred cCCCEEEEECccHHH-----HHHHHHHHhCCCeEEEEcC
Confidence 346899999777766 6788999999999998753
No 203
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=44.12 E-value=19 Score=32.89 Aligned_cols=38 Identities=5% Similarity=-0.068 Sum_probs=28.3
Q ss_pred cceEEEEcCCCCC---ChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPG---HMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~G---Hi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
||||+|+..+... .......++++|.++||+|.++.+.
T Consensus 1 mm~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 1 MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CCEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGG
T ss_pred CceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEchh
Confidence 3699999977421 1234567999999999999988763
No 204
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=43.85 E-value=12 Score=35.47 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=28.6
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+++|||.|+-.|..| ..+|..|++.||+|++....
T Consensus 27 ~~~mkI~VIGaG~mG-----~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 27 PFKHPIAILGAGSWG-----TALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CCCSCEEEECCSHHH-----HHHHHHHHTTTCCEEEECSC
T ss_pred ccCCeEEEECccHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 346899999877666 46899999999999998864
No 205
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=43.30 E-value=25 Score=30.12 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=24.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHH-HCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFA-ANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~-~rGh~Vt~~~~~ 44 (490)
.|||.++++ |+.|-+ -.++++.|+ ++||+|+.+.-.
T Consensus 3 ~mmk~vlVt-Gasg~i--G~~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 3 AMYXYITIL-GAAGQI--AQXLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp CSCSEEEEE-STTSHH--HHHHHHHHHHHCCCEEEEEESS
T ss_pred ceEEEEEEE-eCCcHH--HHHHHHHHHhcCCceEEEEecC
Confidence 356755555 333433 368899999 899999988753
No 206
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=43.29 E-value=16 Score=33.64 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=26.9
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.+||||.|+-.|..| ..+|+.|+++||+|+++-.
T Consensus 19 ~~m~~I~iIG~G~mG-----~~~A~~l~~~G~~V~~~dr 52 (310)
T 3doj_A 19 SHMMEVGFLGLGIMG-----KAMSMNLLKNGFKVTVWNR 52 (310)
T ss_dssp CCSCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred ccCCEEEEECccHHH-----HHHHHHHHHCCCeEEEEeC
Confidence 467899999665444 6789999999999998754
No 207
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=43.19 E-value=1.6e+02 Score=26.05 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=21.0
Q ss_pred cCCCcEEEEcCCCcc----hHHHHHHhCCCeEEEe
Q 044012 114 EQNPNCIVSDNLFPW----TVSIAEELGIPRLAFT 144 (490)
Q Consensus 114 ~~~pD~VI~D~~~~~----~~~~A~~lgiP~v~~~ 144 (490)
+.++|.||....... ....+...|||+|.+.
T Consensus 59 ~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~ 93 (297)
T 3rot_A 59 ATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVD 93 (297)
T ss_dssp HTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEES
T ss_pred HcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 457999997665432 3334566799999874
No 208
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=43.09 E-value=14 Score=33.90 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=26.8
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
++++||.|+-.|..|+ .||..|+++||+|+++-.
T Consensus 13 ~~~~~I~VIG~G~mG~-----~iA~~la~~G~~V~~~d~ 46 (302)
T 1f0y_A 13 IIVKHVTVIGGGLMGA-----GIAQVAAATGHTVVLVDQ 46 (302)
T ss_dssp CCCCEEEEECCSHHHH-----HHHHHHHHTTCEEEEECS
T ss_pred ccCCEEEEECCCHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 3567899997766554 588899999999998764
No 209
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=42.37 E-value=27 Score=27.76 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=27.2
Q ss_pred cceEEEEcCCCCCChHHH-HHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPM-VDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~-l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
|+||+++-....|+..-+ ..|++.|.++|++|.++-..+
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAAD 40 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhh
Confidence 467776665667877653 456777888899999886543
No 210
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=41.94 E-value=41 Score=30.90 Aligned_cols=39 Identities=10% Similarity=-0.123 Sum_probs=29.4
Q ss_pred cceEEEEcCCCCC-C---hHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPG-H---MVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~G-H---i~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
++||+++..+..+ | +.....++++|.++||+|..+-+.+
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~ 55 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAE 55 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4788888854322 2 3467899999999999999998544
No 211
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=41.77 E-value=33 Score=31.97 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCCh
Q 044012 295 SKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGW 374 (490)
Q Consensus 295 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~ 374 (490)
+.+-...+.+++.....+.||...+. ..-.++.+++++..+-+++.. ||-....
T Consensus 63 d~~Ra~dL~~a~~Dp~i~aI~~~rGG------------------------~g~~rlL~~LD~~~i~~~PK~--~~GySDi 116 (327)
T 4h1h_A 63 IRSRVADIHEAFNDSSVKAILTVIGG------------------------FNSNQLLPYLDYDLISENPKI--LCGFSDI 116 (327)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEESCCC------------------------SCGGGGGGGCCHHHHHHSCCE--EEECTTH
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCc------------------------hhHHHHhhhcchhhhccCCeE--EEecccc
Confidence 44557779999999999999998766 112445566666666667766 7777777
Q ss_pred hHHHHHHH--hCCcEeeccC
Q 044012 375 NSILEGVS--AGVPMVTWPV 392 (490)
Q Consensus 375 ~s~~eal~--~GvP~l~~P~ 392 (490)
.+++-+++ .|+..+.-|.
T Consensus 117 T~L~~al~~~~g~~t~hGp~ 136 (327)
T 4h1h_A 117 TALATAIYTQTELITYSGAH 136 (327)
T ss_dssp HHHHHHHHHHHCBCEEECCC
T ss_pred cHHHHHHHHhcCeEEEeCcc
Confidence 77777765 3555555554
No 212
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=41.52 E-value=57 Score=32.12 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=31.4
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
++++|-+|++. ++=.-++.+|+.|.+.|+++. .+....+.+++.
T Consensus 7 ~~~i~~aLISV---sDK~glvelAk~L~~lGfeI~--ATgGTak~L~e~ 50 (523)
T 3zzm_A 7 RRPIRRALISV---YDKTGLVDLAQGLSAAGVEII--STGSTAKTIADT 50 (523)
T ss_dssp CCCCCEEEEEE---SSCTTHHHHHHHHHHTTCEEE--ECHHHHHHHHTT
T ss_pred cccccEEEEEE---eccccHHHHHHHHHHCCCEEE--EcchHHHHHHHc
Confidence 55566677776 344558899999999999875 555556666665
No 213
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=41.43 E-value=47 Score=29.25 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=27.8
Q ss_pred cceEEEEcCCCCC-----------ChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPG-----------HMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~G-----------Hi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|+||+|+-....+ ...=+....+.|.+.|++|+++++.
T Consensus 3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~ 51 (243)
T 1rw7_A 3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSET 51 (243)
T ss_dssp CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCC
Confidence 4689888764221 3345677788899999999999974
No 214
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=41.32 E-value=28 Score=30.75 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=30.5
Q ss_pred cceEEEEc--CCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLP--YIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~--~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
|+|++.+. -++.|-..-...||..|+++|++|.++=...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 34555554 4577999999999999999999999987654
No 215
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=41.29 E-value=58 Score=31.62 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+||+++.. | ...+.+++++.+.|++|+++.+.
T Consensus 2 k~ilI~g~---g--~~~~~i~~a~~~~G~~vv~v~~~ 33 (451)
T 2vpq_A 2 KKVLIANR---G--EIAVRIIRACRDLGIQTVAIYSE 33 (451)
T ss_dssp CEEEECCC---H--HHHHHHHHHHHHTTCEEEEEEEG
T ss_pred ceEEEeCC---C--HHHHHHHHHHHHcCCEEEEEecc
Confidence 57777652 2 24668899999999999988753
No 216
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=41.24 E-value=32 Score=27.29 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=28.9
Q ss_pred eEEEE-cCCCCCChHH--HHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 044012 9 HVMFL-PYIAPGHMVP--MVDMARLFAANGIQVTIILTTMNARRFQ 51 (490)
Q Consensus 9 ~Il~~-~~~~~GHi~p--~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (490)
|++|+ ..+-+|+... .+.+|.++...||+|.++...+..-...
T Consensus 7 k~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~~DGV~~~~ 52 (136)
T 2hy5_B 7 KFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDDGVYQLT 52 (136)
T ss_dssp EEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGGGGGGGB
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEEhHHHHHHh
Confidence 45444 4445666544 5777999999999999998765444333
No 217
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=41.19 E-value=26 Score=31.25 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+.|+|..-|+-|-..-...||..|+++|++|.++=..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 4567766778899999999999999999999887543
No 218
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=41.02 E-value=59 Score=25.94 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=58.3
Q ss_pred EEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccCCCCCCC
Q 044012 11 MFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCENLMSTST 90 (490)
Q Consensus 11 l~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 90 (490)
+|++... .+=.-++.+|+.|.+.|+++. .+....+.+++. ++....+... +++...
T Consensus 27 vliSv~d-~dK~~l~~~a~~l~~lGf~i~--AT~GTa~~L~~~---------Gi~v~~v~k~------~egg~~------ 82 (143)
T 2yvq_A 27 ILIGIQQ-SFRPRFLGVAEQLHNEGFKLF--ATEATSDWLNAN---------NVPATPVAWP------SQEGQN------ 82 (143)
T ss_dssp EEEECCG-GGHHHHHHHHHHHHTTTCEEE--EEHHHHHHHHHT---------TCCCEEECCG------GGC---------
T ss_pred EEEEecc-cchHHHHHHHHHHHHCCCEEE--ECchHHHHHHHc---------CCeEEEEEec------cCCCcc------
Confidence 5555433 355668899999999999743 333445566655 5555555311 111000
Q ss_pred hhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCCC--------cchHHHHHHhCCCeEE
Q 044012 91 PETTKKLFPALELLRPEIEKLFREQNPNCIVSDNLF--------PWTVSIAEELGIPRLA 142 (490)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~--------~~~~~~A~~lgiP~v~ 142 (490)
...+.+.+.+++.+.|+||.-.-. +.-...|-.++||++.
T Consensus 83 ------------~~~~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 83 ------------PSLSSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp --------------CBCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ------------cccccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 000346777888999999986533 1235568889999875
No 219
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=41.00 E-value=33 Score=32.33 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=21.5
Q ss_pred cCCceeecccCChhHH---HHHHHhCCcEeec
Q 044012 362 HQAIGGFLTHCGWNSI---LEGVSAGVPMVTW 390 (490)
Q Consensus 362 ~~~~~~~ItHGG~~s~---~eal~~GvP~l~~ 390 (490)
++|+ +|++||.-|+ ..|...|+|.++.
T Consensus 92 ~PDv--Vi~~g~~~s~p~~laA~~~~iP~vih 121 (365)
T 3s2u_A 92 RPVC--VLGLGGYVTGPGGLAARLNGVPLVIH 121 (365)
T ss_dssp CCSE--EEECSSSTHHHHHHHHHHTTCCEEEE
T ss_pred CCCE--EEEcCCcchHHHHHHHHHcCCCEEEE
Confidence 5777 9999998765 4567789999964
No 220
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=40.83 E-value=15 Score=34.45 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=26.5
Q ss_pred CCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCC-eEEEEeCC
Q 044012 3 SENQKLHVMFLPYIAPGHMVPMVDMARLFAANGI-QVTIILTT 44 (490)
Q Consensus 3 ~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh-~Vt~~~~~ 44 (490)
|.+++|||.++-. |++-.. ||..|++.|| +|+++-..
T Consensus 5 ~~~~~~kI~VIGa---G~vG~~--lA~~la~~g~~~V~L~D~~ 42 (331)
T 1pzg_A 5 LVQRRKKVAMIGS---GMIGGT--MGYLCALRELADVVLYDVV 42 (331)
T ss_dssp CCSCCCEEEEECC---SHHHHH--HHHHHHHHTCCEEEEECSS
T ss_pred cCCCCCEEEEECC---CHHHHH--HHHHHHhCCCCeEEEEECC
Confidence 3456689999864 444433 8899999999 97777654
No 221
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=40.72 E-value=1.8e+02 Score=25.32 Aligned_cols=43 Identities=5% Similarity=0.040 Sum_probs=22.8
Q ss_pred CCCCCCcceEEEEcCCCCCCh-HH-HHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHM-VP-MVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi-~p-~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+...+..+|.++.......+ .. ...+-+++.++|+++.++..
T Consensus 1 ~s~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 45 (276)
T 3jy6_A 1 MSLTQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA 45 (276)
T ss_dssp ----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCcCCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 445556677776653322222 22 33556666777988887664
No 222
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=40.49 E-value=35 Score=31.93 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCCh
Q 044012 295 SKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGW 374 (490)
Q Consensus 295 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~ 374 (490)
+.+-...+.+++.....+.||.+.+. ..-.++.+++++..+-+++.. ||-+...
T Consensus 64 d~~Ra~dL~~a~~Dp~i~aI~~~rGG------------------------~g~~rlL~~lD~~~i~~~PK~--~~GySDi 117 (336)
T 3sr3_A 64 IQERAKELNALIRNPNVSCIMSTIGG------------------------MNSNSLLPYIDYDAFQNNPKI--MIGYSDA 117 (336)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEESCCC------------------------SCGGGGGGGSCHHHHHHSCCE--EEECGGG
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcccc------------------------ccHHHHhhhcChhHHhhCCeE--EEEechH
Confidence 44557778899998899999988776 112445566666666667777 8888888
Q ss_pred hHHHHHHH--hCCcEeeccC
Q 044012 375 NSILEGVS--AGVPMVTWPV 392 (490)
Q Consensus 375 ~s~~eal~--~GvP~l~~P~ 392 (490)
..++-+++ .|+..+-=|.
T Consensus 118 TaL~~al~~~~G~~t~hGp~ 137 (336)
T 3sr3_A 118 TALLLGIYAKTGIPTFYGPA 137 (336)
T ss_dssp HHHHHHHHHHHCCCEEECCC
T ss_pred HHHHHHHHHhcCceEEECCh
Confidence 88888887 5888877776
No 223
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=40.47 E-value=16 Score=35.60 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=24.6
Q ss_pred CCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 4 ENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 4 ~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+.++|||.|+-.|..| +.+|..|++ ||+|+.+-.
T Consensus 33 ~~~~mkIaVIGlG~mG-----~~lA~~La~-G~~V~~~D~ 66 (432)
T 3pid_A 33 GSEFMKITISGTGYVG-----LSNGVLIAQ-NHEVVALDI 66 (432)
T ss_dssp --CCCEEEEECCSHHH-----HHHHHHHHT-TSEEEEECS
T ss_pred ccCCCEEEEECcCHHH-----HHHHHHHHc-CCeEEEEec
Confidence 3567899999766555 456778887 999998764
No 224
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=40.24 E-value=31 Score=29.90 Aligned_cols=38 Identities=8% Similarity=0.147 Sum_probs=29.8
Q ss_pred ceEE-EEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 8 LHVM-FLP-YIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 8 ~~Il-~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+|++ |+. -++.|-..-...||..|+++|++|.++=...
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 3444 443 4577999999999999999999999987644
No 225
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=39.63 E-value=2e+02 Score=25.46 Aligned_cols=37 Identities=8% Similarity=-0.020 Sum_probs=21.9
Q ss_pred CcceEEEEcCCCCCChHH--HHHHHHHHHHCCCeEEEEe
Q 044012 6 QKLHVMFLPYIAPGHMVP--MVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p--~l~LA~~L~~rGh~Vt~~~ 42 (490)
++.+|+++.......+.. ...+-+++.++|+++.++.
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 41 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG 41 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC
Confidence 456787777554443332 3355666677799888754
No 226
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=39.53 E-value=1.2e+02 Score=28.89 Aligned_cols=31 Identities=6% Similarity=-0.049 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~ 43 (490)
|||+++..++ .+.+++..|+++ |++++++.+
T Consensus 1 mkililG~g~-----r~~a~a~~l~~~~g~~~v~~~~ 32 (417)
T 2ip4_A 1 MKVLVVGSGG-----REHALLWKAAQSPRVKRLYAAP 32 (417)
T ss_dssp CEEEEEESSH-----HHHHHHHHHHTCSSCCEEEEEE
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCCCEEEEEC
Confidence 5898888763 468899999775 899888865
No 227
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=39.52 E-value=33 Score=31.35 Aligned_cols=40 Identities=13% Similarity=-0.008 Sum_probs=32.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+++.|+|..-|+.|=..-...||..|+++|++|.++=...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3455666666688999999999999999999999986543
No 228
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=38.82 E-value=23 Score=26.57 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=24.0
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCC-CeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANG-IQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rG-h~Vt~~~~ 43 (490)
.+++|+++-. |.+- ..+++.|.++| ++|+++..
T Consensus 4 ~~~~v~I~G~---G~iG--~~~~~~l~~~g~~~v~~~~r 37 (118)
T 3ic5_A 4 MRWNICVVGA---GKIG--QMIAALLKTSSNYSVTVADH 37 (118)
T ss_dssp TCEEEEEECC---SHHH--HHHHHHHHHCSSEEEEEEES
T ss_pred CcCeEEEECC---CHHH--HHHHHHHHhCCCceEEEEeC
Confidence 3568887743 4432 56889999999 99888765
No 229
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=38.57 E-value=44 Score=30.79 Aligned_cols=74 Identities=9% Similarity=0.085 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhc-cCCceeecccC
Q 044012 294 FSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILE-HQAIGGFLTHC 372 (490)
Q Consensus 294 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~-~~~~~~~ItHG 372 (490)
.+.+-...+.+++.....+.||.+.+. ..-.++.+++++..+-+ ++.. ||-+.
T Consensus 64 td~~Ra~dL~~a~~Dp~i~aI~~~rGG------------------------yga~rlLp~LD~~~i~~a~PK~--~iGyS 117 (311)
T 1zl0_A 64 TVEQRLEDLHNAFDMPDITAVWCLRGG------------------------YGCGQLLPGLDWGRLQAASPRP--LIGFS 117 (311)
T ss_dssp CHHHHHHHHHHHHHSTTEEEEEESCCS------------------------SCGGGGTTTCCHHHHHHSCCCC--EEECG
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEccCC------------------------cCHHHHhhccchhhhhccCCCE--EEEEc
Confidence 345557778899998899999998776 11244556777666666 7777 99999
Q ss_pred ChhHHHHHHH-hCCcEeeccCc
Q 044012 373 GWNSILEGVS-AGVPMVTWPVF 393 (490)
Q Consensus 373 G~~s~~eal~-~GvP~l~~P~~ 393 (490)
....++-+++ .|++.+-=|..
T Consensus 118 DiTaL~~al~~~G~~t~hGp~~ 139 (311)
T 1zl0_A 118 DISVLLSAFHRHGLPAIHGPVA 139 (311)
T ss_dssp GGHHHHHHHHHTTCCEEECCCG
T ss_pred hhHHHHHHHHHcCCcEEECHhh
Confidence 9999999987 48888877754
No 230
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=38.10 E-value=43 Score=25.22 Aligned_cols=37 Identities=8% Similarity=0.119 Sum_probs=28.3
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+.|||++++..|.|+-.-...|-+.+.++|.++.+-.
T Consensus 3 ~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~ 39 (109)
T 2l2q_A 3 GSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEA 39 (109)
T ss_dssp CCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEE
T ss_pred CceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4588999998888888656677778888898765433
No 231
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=37.96 E-value=54 Score=25.21 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHhhcCCCcEEEEcCCCc--chHHHHHHh-------CCCeEEEecc
Q 044012 109 EKLFREQNPNCIVSDNLFP--WTVSIAEEL-------GIPRLAFTGS 146 (490)
Q Consensus 109 ~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-------giP~v~~~~~ 146 (490)
.+.++..+||+||.|.... .+..+.+.+ .+|.|+++..
T Consensus 40 l~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 40 LEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 3445566899999997654 344444433 5788877654
No 232
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=37.68 E-value=30 Score=29.98 Aligned_cols=28 Identities=7% Similarity=0.242 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCC--ChHHHHHHHHHHHH
Q 044012 6 QKLHVMFLPYIAPG--HMVPMVDMARLFAA 33 (490)
Q Consensus 6 ~~~~Il~~~~~~~G--Hi~p~l~LA~~L~~ 33 (490)
+.|||++..|+-+| .+||...++++|..
T Consensus 2 ~~m~VLvTGF~PF~~~~~NPS~~~v~~L~~ 31 (215)
T 3giu_A 2 NAMHILVTGFAPFDNQNINPSWEAVTQLED 31 (215)
T ss_dssp --CEEEEEEECCCTTCSCCHHHHHHHHSCS
T ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHhcc
Confidence 46899988877443 57999999999965
No 233
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=37.58 E-value=1.2e+02 Score=26.69 Aligned_cols=31 Identities=19% Similarity=0.059 Sum_probs=21.1
Q ss_pred hcCCCcEEEEcCCCcch-HHHHHHhCCCeEEE
Q 044012 113 REQNPNCIVSDNLFPWT-VSIAEELGIPRLAF 143 (490)
Q Consensus 113 ~~~~pD~VI~D~~~~~~-~~~A~~lgiP~v~~ 143 (490)
++.++|.||+--++..+ ..+.+.+++|++-+
T Consensus 66 ~~~g~d~iviaCnt~~~l~~lr~~~~iPvigi 97 (245)
T 3qvl_A 66 REQGVDGHVIASFGDPGLLAARELAQGPVIGI 97 (245)
T ss_dssp HHHTCSEEEEC-CCCTTHHHHHHHCSSCEEEH
T ss_pred HHCCCCEEEEeCCChhHHHHHHHHcCCCEECc
Confidence 44689999987766643 34556679998754
No 234
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=37.55 E-value=61 Score=24.29 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 148 (490)
+..+.++..+||+||.|...+ .+..+.+.+ .+|.|.++....
T Consensus 38 ~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (126)
T 1dbw_A 38 AFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGD 86 (126)
T ss_dssp HHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTC
T ss_pred HHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 344556667899999997554 344444433 578888766543
No 235
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=37.48 E-value=34 Score=32.29 Aligned_cols=38 Identities=11% Similarity=-0.035 Sum_probs=31.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 10 VMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 10 Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
++++.-++.|=..-++.++..+...|..|.|+..+...
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 45555678899999999999999999999999886543
No 236
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=37.39 E-value=1.7e+02 Score=23.85 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=73.2
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhcc
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEH 362 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~ 362 (490)
.|-|-+||.+ +-+..++....++..+..+=+.+.+. .. .|+.+.+. +... .+
T Consensus 4 ~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~sa---HR-------~p~~~~~~-------------~~~a---~~ 55 (159)
T 3rg8_A 4 LVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIGSA---HK-------TAEHVVSM-------------LKEY---EA 55 (159)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCT---TT-------CHHHHHHH-------------HHHH---HT
T ss_pred eEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEcc---cC-------CHHHHHHH-------------HHHh---hh
Confidence 4666677754 45667788888888888765544332 11 33322211 1111 11
Q ss_pred C-CceeecccCChh----HHHHHHHhCCcEeeccCcc---cccchHHHHHHhh--ccceeeccccccccccCCCCccchh
Q 044012 363 Q-AIGGFLTHCGWN----SILEGVSAGVPMVTWPVFA---EQFNNEKLVTQVL--KFGLPVGNEIWKIWATQDSPVINRG 432 (490)
Q Consensus 363 ~-~~~~~ItHGG~~----s~~eal~~GvP~l~~P~~~---DQ~~na~rv~e~~--G~G~~l~~~~~~~~~~~~~~~~t~~ 432 (490)
. ..+.||.=+|.. ++..++ .-+|+|.+|... +..+ -.-.+ +. |+.+.-- + +..++.
T Consensus 56 ~~~~~ViIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~d-LlS~v-qmp~GvpVatv-~----------~~~nAa 121 (159)
T 3rg8_A 56 LDRPKLYITIAGRSNALSGFVDGF-VKGATIACPPPSDSFAGAD-IYSSL-RMPSGISPALV-L----------EPKNAA 121 (159)
T ss_dssp SCSCEEEEEECCSSCCHHHHHHHH-SSSCEEECCCCCCGGGGTH-HHHHH-CCCTTCCCEEC-C----------SHHHHH
T ss_pred cCCCcEEEEECCchhhhHHHHHhc-cCCCEEEeeCCCCCCCCcc-HHHHH-hCCCCCceEEe-c----------CchHHH
Confidence 1 123366655533 444443 668999999643 2333 22222 22 4443221 1 256777
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Q 044012 433 NIKNAICVVMDNDDQEAVKMRKKANHLKELAKKA 466 (490)
Q Consensus 433 ~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~ 466 (490)
-++..|-.+- | +.++++.+..+++.++.
T Consensus 122 ~lA~~Il~~~--d----~~l~~kl~~~r~~~~~~ 149 (159)
T 3rg8_A 122 LLAARIFSLY--D----KEIADSVKSYMESNAQK 149 (159)
T ss_dssp HHHHHHHTTT--C----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--C----HHHHHHHHHHHHHHHHH
Confidence 6766665443 3 57888888888777643
No 237
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=37.36 E-value=35 Score=30.80 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=31.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|+.|+|..-|+-|-..-...||..|+++|++|.++=..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D 39 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 39 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 34566766778899999999999999999999987544
No 238
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=36.94 E-value=45 Score=28.37 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=27.5
Q ss_pred CcceEEEEcCCCCCChHHHH-HHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMV-DMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l-~LA~~L~~rGh~Vt~~~~ 43 (490)
+||||+++-....|+..-+. .+++.|.+.|++|.++--
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l 43 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKV 43 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEec
Confidence 56899888766677766544 456777778999887764
No 239
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=36.89 E-value=38 Score=30.96 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+|++. |+.|.+ -..|+++|.++||+|+.++-..
T Consensus 13 ~ilVt--GatG~i--G~~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 13 KILIF--GGTGYI--GNHMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp CEEEE--TTTSTT--HHHHHHHHHHTTCCEEEEECTT
T ss_pred eEEEE--CCCchH--HHHHHHHHHHCCCcEEEEECCC
Confidence 56554 444544 3578899999999999887543
No 240
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=36.87 E-value=48 Score=29.39 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=26.1
Q ss_pred CCCcceEEEEcCCCC--CChHHHHH-HHHHHHHCCCeEEEEeC
Q 044012 4 ENQKLHVMFLPYIAP--GHMVPMVD-MARLFAANGIQVTIILT 43 (490)
Q Consensus 4 ~~~~~~Il~~~~~~~--GHi~p~l~-LA~~L~~rGh~Vt~~~~ 43 (490)
.+.+|||+++....+ |...-+.. +++.+.+.|++|.++--
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL 73 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDP 73 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 356789988875543 44444443 56667778999887653
No 241
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=36.87 E-value=25 Score=31.19 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=30.9
Q ss_pred CcceEEEEc--CCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 6 QKLHVMFLP--YIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 6 ~~~~Il~~~--~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
+++|++.+. -|+.|-..-...||..|+++|++|.++=....
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 345555444 45778889999999999999999999865443
No 242
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=36.66 E-value=68 Score=27.86 Aligned_cols=39 Identities=5% Similarity=0.115 Sum_probs=32.2
Q ss_pred ceEEEEcCC-CCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 8 LHVMFLPYI-APGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 8 ~~Il~~~~~-~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
-.+.+++.+ +.|=..-++.++..+..+|..|.++.+...
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d 51 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID 51 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC
Confidence 456666655 999999999999999999999999976543
No 243
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=36.62 E-value=35 Score=31.03 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=24.6
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
++|||.|+-.|..|. .+|+.|.+.||+|+++.
T Consensus 3 ~~~~i~iiG~G~~G~-----~~a~~l~~~g~~V~~~~ 34 (301)
T 3cky_A 3 KSIKIGFIGLGAMGK-----PMAINLLKEGVTVYAFD 34 (301)
T ss_dssp -CCEEEEECCCTTHH-----HHHHHHHHTTCEEEEEC
T ss_pred CCCEEEEECccHHHH-----HHHHHHHHCCCeEEEEe
Confidence 468999997766664 46888999999998764
No 244
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=36.45 E-value=35 Score=31.28 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=26.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
|.||.|+-.+..|. ++|+.|.++||+|++.-
T Consensus 3 M~kIgfIGlG~MG~-----~mA~~L~~~G~~v~v~d 33 (300)
T 3obb_A 3 MKQIAFIGLGHMGA-----PMATNLLKAGYLLNVFD 33 (300)
T ss_dssp CCEEEEECCSTTHH-----HHHHHHHHTTCEEEEEC
T ss_pred cCEEEEeeehHHHH-----HHHHHHHhCCCeEEEEc
Confidence 56999999887774 78999999999999873
No 245
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=36.32 E-value=20 Score=33.30 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=25.4
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
++++||.|+-.|..| ..+|..|+++||+|+++-.
T Consensus 4 ~~~~kI~vIGaG~MG-----~~iA~~la~~G~~V~l~d~ 37 (319)
T 2dpo_A 4 PAAGDVLIVGSGLVG-----RSWAMLFASGGFRVKLYDI 37 (319)
T ss_dssp ---CEEEEECCSHHH-----HHHHHHHHHTTCCEEEECS
T ss_pred CCCceEEEEeeCHHH-----HHHHHHHHHCCCEEEEEeC
Confidence 466899999766555 5788999999999998864
No 246
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=36.27 E-value=68 Score=24.23 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=24.7
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHH-------hCCCeEEEecc
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEE-------LGIPRLAFTGS 146 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~-------lgiP~v~~~~~ 146 (490)
+..+.+++.+||+||.|.... .+..+.+. -++|.|.++..
T Consensus 38 ~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 38 SGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 334455667899999997554 24333332 26788877554
No 247
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=36.05 E-value=32 Score=36.07 Aligned_cols=116 Identities=7% Similarity=0.031 Sum_probs=74.3
Q ss_pred eeccchhHhhhccCCceeecccCChhHHHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCC-c
Q 044012 350 IKGWAPQVLILEHQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSP-V 428 (490)
Q Consensus 350 ~~~~~p~~~ll~~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~-~ 428 (490)
+.++.+-.++|..+|+ +||= =...+.|.+..++|+|....-.|++..- ..| ...+...+ .|++ .
T Consensus 603 ~~~~~di~~ll~~aD~--lITD-ySSv~fD~~~l~kPiif~~~D~~~Y~~~-----~rg--~y~d~~~~-----~pg~~~ 667 (729)
T 3l7i_A 603 VSNYNDVSELFLISDC--LITD-YSSVMFDYGILKRPQFFFAYDIDKYDKG-----LRG--FYMNYMED-----LPGPIY 667 (729)
T ss_dssp CTTCSCHHHHHHTCSE--EEES-SCTHHHHHGGGCCCEEEECTTTTTTTSS-----CCS--BSSCTTSS-----SSSCEE
T ss_pred CCCCcCHHHHHHHhCE--EEee-chHHHHhHHhhCCCEEEecCCHHHHhhc-----cCC--cccChhHh-----CCCCeE
Confidence 4456677889999999 9996 4567889999999999987666654331 123 33322100 1111 4
Q ss_pred cchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 044012 429 INRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEGGSSCNDLKALIEDIR 485 (490)
Q Consensus 429 ~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 485 (490)
-|.++|.++|.+...++ ..|+++.+++.+++-.. ..|.++...++.+++...
T Consensus 668 ~~~~eL~~~i~~~~~~~----~~~~~~~~~~~~~~~~~-~dg~as~ri~~~i~~~~~ 719 (729)
T 3l7i_A 668 TEPYGLAKELKNLDKVQ----QQYQEKIDAFYDRFCSV-DNGKASQYIGDLIHKDIK 719 (729)
T ss_dssp SSHHHHHHHHTTHHHHH----HHTHHHHHHHHHHHSTT-CCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhhhccc----hhHHHHHHHHHHHhCCc-cCChHHHHHHHHHHhcCc
Confidence 67788999998877522 47888888888887532 344554444555554443
No 248
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=35.96 E-value=25 Score=29.98 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|||++. |+.|.+- ..|++.|.++||+|+.+.-.
T Consensus 1 MkvlVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGII--GATGRAG--SRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CeEEEE--cCCchhH--HHHHHHHHhCCCEEEEEEcC
Confidence 566554 4445443 58899999999999998754
No 249
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=35.79 E-value=17 Score=28.80 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=26.5
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+.||+++..+..| ..+|+.|.++||+|+++....
T Consensus 7 ~~~viIiG~G~~G-----~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVG-----SLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHH-----HHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHH-----HHHHHHHHHCCCCEEEEECCH
Confidence 4688888765444 478999999999999998643
No 250
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=35.73 E-value=1.6e+02 Score=26.90 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEe
Q 044012 105 RPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFT 144 (490)
Q Consensus 105 ~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~ 144 (490)
..++.+.+++.+..+|+++..+. .+..+|+..|++.+.+.
T Consensus 228 l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~~v~~l~ 269 (312)
T 2o1e_A 228 LAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKTEVLN 269 (312)
T ss_dssp HHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCcEEEec
Confidence 46778888889999999998776 47779999999987653
No 251
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=35.54 E-value=26 Score=31.20 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=34.3
Q ss_pred CcceEEEEcCC---CCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 6 QKLHVMFLPYI---APGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 6 ~~~~Il~~~~~---~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
++||..|++.+ +.|--.-...|+..|.+||++||.+--..+.
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYl 65 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYI 65 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBC
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCce
Confidence 56799999966 5577788899999999999999988765443
No 252
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=35.48 E-value=19 Score=32.95 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=26.0
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+|||.|+-.+..| ..+|+.|+++||+|+++-.
T Consensus 15 ~~~I~vIG~G~mG-----~~~A~~l~~~G~~V~~~dr 46 (296)
T 3qha_A 15 QLKLGYIGLGNMG-----APMATRMTEWPGGVTVYDI 46 (296)
T ss_dssp CCCEEEECCSTTH-----HHHHHHHTTSTTCEEEECS
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeC
Confidence 4689999877666 4688999999999998854
No 253
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=35.45 E-value=18 Score=33.41 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=25.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCC-eEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGI-QVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh-~Vt~~~~ 43 (490)
+++|||.|+-.|..| ..+|+.|++.|| +|+++..
T Consensus 22 ~~~~~I~iIG~G~mG-----~~~A~~L~~~G~~~V~~~dr 56 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAA-----SAIASGLRQAGAIDMAAYDA 56 (312)
T ss_dssp ---CEEEEECCSHHH-----HHHHHHHHHHSCCEEEEECS
T ss_pred CCCCEEEEECccHHH-----HHHHHHHHHCCCCeEEEEcC
Confidence 456899999765555 578999999999 9988765
No 254
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=35.40 E-value=32 Score=31.14 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=23.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+||||.|+-.|..|. .+|+.|.+.||+|+++.
T Consensus 2 ~~m~i~iiG~G~~G~-----~~a~~l~~~g~~V~~~~ 33 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGS-----PMAINLARAGHQLHVTT 33 (295)
T ss_dssp --CEEEECCCSTTHH-----HHHHHHHHTTCEEEECC
T ss_pred CCCEEEEEccCHHHH-----HHHHHHHhCCCEEEEEc
Confidence 468999997666664 57888999999998664
No 255
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=35.38 E-value=81 Score=23.89 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=30.6
Q ss_pred CCcceEEEEcCCCCCChHH-HHHHHHHHHHCCCeEEEEe
Q 044012 5 NQKLHVMFLPYIAPGHMVP-MVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p-~l~LA~~L~~rGh~Vt~~~ 42 (490)
.+++||++++..|.|.-.- ...|-+.+.++|.++.+-.
T Consensus 19 ~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~ 57 (113)
T 1tvm_A 19 GSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ 57 (113)
T ss_dssp CSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5678999999999999885 5677788889999865544
No 256
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=35.36 E-value=1.3e+02 Score=27.54 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+++++.++.| --.++|+.|+++|++|....-
T Consensus 6 k~vlVTGas~G---IG~aia~~L~~~G~~V~~~~r 37 (324)
T 3u9l_A 6 KIILITGASSG---FGRLTAEALAGAGHRVYASMR 37 (324)
T ss_dssp CEEEESSCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCcH---HHHHHHHHHHHCCCEEEEecC
Confidence 57777755543 245899999999999987653
No 257
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=35.10 E-value=25 Score=31.90 Aligned_cols=32 Identities=25% Similarity=0.143 Sum_probs=25.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+||.|+-.|..| ..+|+.|+++||+|+++..
T Consensus 1 M~~I~iiG~G~mG-----~~~a~~l~~~G~~V~~~dr 32 (287)
T 3pdu_A 1 MTTYGFLGLGIMG-----GPMAANLVRAGFDVTVWNR 32 (287)
T ss_dssp CCCEEEECCSTTH-----HHHHHHHHHHTCCEEEECS
T ss_pred CCeEEEEccCHHH-----HHHHHHHHHCCCeEEEEcC
Confidence 4689999777666 4578899999999998754
No 258
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=35.05 E-value=38 Score=29.48 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=34.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHH-HHCCCeEEEEeCCcchhhhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLF-AANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L-~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
-=+++...|+.|-..-++.+|... .+.|..|.+++.+...+.+..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~ 76 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRR 76 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHH
Confidence 346777788999999999987664 556889999998777655544
No 259
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=34.93 E-value=25 Score=30.14 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=24.8
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
..+|||.|+-.+..| ..+|..|+++||+|+++..
T Consensus 17 ~~~~~I~iiG~G~mG-----~~la~~l~~~g~~V~~~~~ 50 (209)
T 2raf_A 17 FQGMEITIFGKGNMG-----QAIGHNFEIAGHEVTYYGS 50 (209)
T ss_dssp ---CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECT
T ss_pred cCCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEEcC
Confidence 357899998755444 5788999999999998854
No 260
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=34.90 E-value=33 Score=31.58 Aligned_cols=33 Identities=6% Similarity=0.083 Sum_probs=27.2
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+|||+++..+ ....+++++.++||+|.++....
T Consensus 2 ~m~Ililg~g------~~~~l~~a~~~~G~~v~~~~~~~ 34 (334)
T 2r85_A 2 KVRIATYASH------SALQILKGAKDEGFETIAFGSSK 34 (334)
T ss_dssp CSEEEEESST------THHHHHHHHHHTTCCEEEESCGG
T ss_pred ceEEEEECCh------hHHHHHHHHHhCCCEEEEEECCC
Confidence 3699998865 56789999999999999988654
No 261
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=34.88 E-value=29 Score=28.22 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=28.8
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
..+++++..+. | +.|++.+++.|.++|.+|+++ ...
T Consensus 23 ~~~~llIaGG~-G-ItPl~sm~~~l~~~~~~v~l~-g~r 58 (158)
T 3lrx_A 23 FGKILAIGAYT-G-IVEVYPIAKAWQEIGNDVTTL-HVT 58 (158)
T ss_dssp CSEEEEEEETT-H-HHHHHHHHHHHHHHTCEEEEE-EEC
T ss_pred CCeEEEEEccC-c-HHHHHHHHHHHHhcCCcEEEE-EeC
Confidence 35788877443 4 999999999999999999999 543
No 262
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=34.86 E-value=55 Score=26.74 Aligned_cols=50 Identities=12% Similarity=0.299 Sum_probs=35.9
Q ss_pred HHHhhHHHHHHHhhcCCCcEEEEcCCCcc---------------hHHHHHHhCCCeEEEecccHH
Q 044012 100 ALELLRPEIEKLFREQNPNCIVSDNLFPW---------------TVSIAEELGIPRLAFTGSGFF 149 (490)
Q Consensus 100 ~~~~~~~~l~~~l~~~~pD~VI~D~~~~~---------------~~~~A~~lgiP~v~~~~~~~~ 149 (490)
........+.+++++.+||.+.++..++. ...++...|+|+.-+.+...-
T Consensus 43 Rl~~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~lgqarGv~~~a~~~~~ipv~eytp~~vK 107 (158)
T 1hjr_A 43 RLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVK 107 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeecccccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHH
Confidence 33456778888899999999998876542 245667788998887665443
No 263
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=34.74 E-value=1.3e+02 Score=29.03 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~ 44 (490)
|||+++..++ ...++++.|+++ |++++++.+.
T Consensus 25 ~~IlIlG~g~-----r~~al~~~~a~~~g~~~v~~~~~ 57 (452)
T 2qk4_A 25 ARVLIIGSGG-----REHTLAWKLAQSHHVKQVLVAPG 57 (452)
T ss_dssp EEEEEEECSH-----HHHHHHHHHTTCTTEEEEEEEEC
T ss_pred cEEEEECCCH-----HHHHHHHHHHhcCCCCEEEEECC
Confidence 7899988663 356778888664 8887777653
No 264
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=34.67 E-value=65 Score=25.15 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecccH
Q 044012 106 PEIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSGF 148 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 148 (490)
.+..+.+++.+||+||.|.... .+..+.+.+ ++|.|+++....
T Consensus 56 ~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 105 (150)
T 4e7p_A 56 QEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKR 105 (150)
T ss_dssp HHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4555667778899999997544 344444432 588888766543
No 265
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=34.66 E-value=40 Score=27.61 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=28.0
Q ss_pred ceEEEEcCCC--C-CChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 8 LHVMFLPYIA--P-GHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 8 ~~Il~~~~~~--~-GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.+|+++|.=+ . ---++...|++.|.++|.+|.|..+|-
T Consensus 24 ~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 64 (180)
T 1pno_A 24 SKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPV 64 (180)
T ss_dssp SEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4677776211 1 124578899999999999999999863
No 266
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=34.59 E-value=65 Score=23.85 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=26.6
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh----CCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL----GIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l----giP~v~~~~~~~ 148 (490)
+..+.++..+||+||.|.... .+..+.+.+ .+|.|.++....
T Consensus 37 ~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~ 84 (122)
T 1zgz_A 37 GLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSD 84 (122)
T ss_dssp HHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSCC
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCCC
Confidence 334455566899999997554 345455444 578777765543
No 267
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=34.51 E-value=83 Score=22.95 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=24.0
Q ss_pred HHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecc
Q 044012 109 EKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGS 146 (490)
Q Consensus 109 ~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~ 146 (490)
.+.++..+||+||.|.... .+..+.+.+ .+|.+.++..
T Consensus 38 ~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 38 LKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 3445566899999997554 344444333 5787777554
No 268
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=34.49 E-value=36 Score=30.10 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=29.3
Q ss_pred eEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 9 HVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 9 ~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.|+|+. -++.|-..-...||..|+++|++|.++=...
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 344433 5577999999999999999999999987544
No 269
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=34.47 E-value=1.4e+02 Score=28.08 Aligned_cols=39 Identities=3% Similarity=-0.060 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCC----ChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 8 LHVMFLPYIAPG----HMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 8 ~~Il~~~~~~~G----Hi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
.++++++.++.+ ....+..+.++|.+.+.+|.+++....
T Consensus 232 ~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~ 274 (398)
T 3oti_A 232 RPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLD 274 (398)
T ss_dssp SCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSC
T ss_pred CCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 467788888773 334477888999888999998887654
No 270
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=34.41 E-value=49 Score=25.03 Aligned_cols=38 Identities=11% Similarity=-0.041 Sum_probs=26.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
.++|||++++..|.|--.-...+=++..++|.+|.+..
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a 41 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS 41 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence 57899999998876554444445555556799988855
No 271
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=34.38 E-value=41 Score=27.69 Aligned_cols=38 Identities=13% Similarity=0.356 Sum_probs=28.1
Q ss_pred ceEEEEcCC--CCC-ChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 8 LHVMFLPYI--APG-HMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 8 ~~Il~~~~~--~~G-Hi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.+|+++|.= +.. --++...|++.|.++|.+|.|..+|-
T Consensus 23 ~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 63 (184)
T 1d4o_A 23 NSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPV 63 (184)
T ss_dssp SEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 467777721 111 24578899999999999999999863
No 272
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=34.31 E-value=1.7e+02 Score=28.76 Aligned_cols=42 Identities=10% Similarity=-0.006 Sum_probs=34.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcchhhh
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTMNARRF 50 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~ 50 (490)
=+++...|+.|-..-.+.+|..++.+ |..|.+++.+...+.+
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l 286 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEET 286 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHH
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 35666678999999999999999987 9999999988765533
No 273
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=34.17 E-value=30 Score=31.32 Aligned_cols=33 Identities=24% Similarity=0.067 Sum_probs=25.4
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+++||.|+-.|..| ..+|+.|+++||+|+++-.
T Consensus 3 ~~~kV~VIGaG~mG-----~~iA~~la~~G~~V~l~d~ 35 (283)
T 4e12_A 3 GITNVTVLGTGVLG-----SQIAFQTAFHGFAVTAYDI 35 (283)
T ss_dssp SCCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCeEEEEeC
Confidence 45789999554434 5789999999999998754
No 274
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=34.06 E-value=49 Score=29.96 Aligned_cols=39 Identities=10% Similarity=0.318 Sum_probs=30.3
Q ss_pred CCcceEEEEcCCCCCChHH--HHHHHHHHHHCC-CeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVP--MVDMARLFAANG-IQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p--~l~LA~~L~~rG-h~Vt~~~~~ 44 (490)
.|+.|||++. +..+|-.+ ...|++.|.+.| ++|++...+
T Consensus 2 ~~~~kvLiv~-G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~ 43 (281)
T 4e5v_A 2 RKPIKTLLIT-GQNNHNWQVSHVVLKQILENSGRFDVDFVISP 43 (281)
T ss_dssp CCCEEEEEEE-SCCSSCHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred CCceEEEEEc-CCCCCChHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 3678999995 55588655 357888888898 999999874
No 275
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=34.05 E-value=24 Score=33.53 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEE
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTII 41 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~ 41 (490)
|||+|+--+--| +.+|-.|+++||+|+++
T Consensus 2 m~V~IVGaGpaG-----l~~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 2 MHVGIIGAGIGG-----TCLAHGLRKHGIKVTIY 30 (412)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEE
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCCEEEE
Confidence 799998755333 78899999999999987
No 276
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=34.00 E-value=43 Score=29.73 Aligned_cols=42 Identities=14% Similarity=0.050 Sum_probs=32.1
Q ss_pred CcceEEEEc--CCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 6 QKLHVMFLP--YIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 6 ~~~~Il~~~--~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
+++|++.+. -|+-|=..-...||..|+++|++|.++=.....
T Consensus 16 ~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 16 KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 345555444 447799999999999999999999988765444
No 277
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=33.95 E-value=38 Score=32.13 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=28.3
Q ss_pred CcceEEEEcCCCCC-C---hHHHHHHHHHH-HHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPG-H---MVPMVDMARLF-AANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~G-H---i~p~l~LA~~L-~~rGh~Vt~~~~ 43 (490)
++|||+++..+..+ | +.....++++| .++||+|+.+-.
T Consensus 2 ~k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~ 44 (377)
T 1ehi_A 2 TKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAI 44 (377)
T ss_dssp -CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEE
T ss_pred CCcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEE
Confidence 46899999755333 3 33468899999 999999999864
No 278
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=33.83 E-value=22 Score=31.15 Aligned_cols=30 Identities=7% Similarity=0.162 Sum_probs=22.9
Q ss_pred CCcceEEEEcCCCCC--ChHHHHHHHHHHHHC
Q 044012 5 NQKLHVMFLPYIAPG--HMVPMVDMARLFAAN 34 (490)
Q Consensus 5 ~~~~~Il~~~~~~~G--Hi~p~l~LA~~L~~r 34 (490)
.+|+||++..|+-+| -+||...++++|...
T Consensus 21 ~~mk~VLvTGF~PF~g~~~NPS~~~v~~L~~~ 52 (228)
T 4hps_A 21 QSMKTILVTAFDPFGGEAINPSWEAIKPLQGS 52 (228)
T ss_dssp CCCEEEEEEEECCCTTCSCCHHHHHHGGGTTC
T ss_pred CCCCEEEEEeccCCCCCCCChHHHHHHHhcCc
Confidence 347789888776433 579999999999765
No 279
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=33.75 E-value=47 Score=28.97 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHCCCeEEEEeCC
Q 044012 23 PMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 23 p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
.-.++|++|+++|++|+++..+
T Consensus 36 iG~aiA~~~~~~Ga~V~l~~~~ 57 (226)
T 1u7z_A 36 MGFAIAAAAARRGANVTLVSGP 57 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHHHHCCCEEEEEECC
Confidence 4568999999999999998754
No 280
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=33.74 E-value=52 Score=30.61 Aligned_cols=83 Identities=11% Similarity=-0.011 Sum_probs=48.4
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhh
Q 044012 281 NSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLIL 360 (490)
Q Consensus 281 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll 360 (490)
+-.|+++-.|-.....+....+...|++.+..+.+..... . .... .. -.....
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~---~----------~~a~-------------~~-~~~~~~ 78 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEK---I----------GDAT-------------LE-AERAMH 78 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS---T----------THHH-------------HH-HHHHTT
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC---c----------chHH-------------HH-HHHHhh
Confidence 3346666544332233456678888888777665544322 0 0000 00 111122
Q ss_pred ccCCceeecccCChhHHHHHHH------hCCcEeeccC
Q 044012 361 EHQAIGGFLTHCGWNSILEGVS------AGVPMVTWPV 392 (490)
Q Consensus 361 ~~~~~~~~ItHGG~~s~~eal~------~GvP~l~~P~ 392 (490)
..+++ +|.=||=||+.|++. .++|+.++|.
T Consensus 79 ~~~d~--vvv~GGDGTv~~v~~~l~~~~~~~pl~iIP~ 114 (337)
T 2qv7_A 79 ENYDV--LIAAGGDGTLNEVVNGIAEKPNRPKLGVIPM 114 (337)
T ss_dssp TTCSE--EEEEECHHHHHHHHHHHTTCSSCCEEEEEEC
T ss_pred cCCCE--EEEEcCchHHHHHHHHHHhCCCCCcEEEecC
Confidence 34566 999999999999864 4689999997
No 281
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=33.57 E-value=50 Score=25.13 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=44.8
Q ss_pred hhccCCceeecccCChhH---------HHHHHHhCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCcc
Q 044012 359 ILEHQAIGGFLTHCGWNS---------ILEGVSAGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVI 429 (490)
Q Consensus 359 ll~~~~~~~~ItHGG~~s---------~~eal~~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~ 429 (490)
=++.+++ +|--.|..| +..|...|+|++++=-++.+ ..-..+ ++.+..++ ..
T Consensus 35 ~I~~~~~--vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~-~~P~~l-~~~a~~iV---------------~W 95 (111)
T 1eiw_A 35 TPEDADA--VIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLE-NVPPEL-EAVSSEVV---------------GW 95 (111)
T ss_dssp CSSSCSE--EEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSS-CCCTTH-HHHCSEEE---------------CS
T ss_pred ccccCCE--EEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCC-cCCHHH-HhhCceec---------------cC
Confidence 3556676 777777776 66788899999998777654 222334 34343332 46
Q ss_pred chhHHHHHHHHHhc
Q 044012 430 NRGNIKNAICVVMD 443 (490)
Q Consensus 430 t~~~l~~~i~~~l~ 443 (490)
+.+.|.++|+..++
T Consensus 96 n~~~I~~aI~~~~~ 109 (111)
T 1eiw_A 96 NPHCIRDALEDALD 109 (111)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhccC
Confidence 78999999998764
No 282
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=33.52 E-value=42 Score=33.13 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=29.8
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC-CC-eEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN-GI-QVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh-~Vt~~~~~~ 45 (490)
+++|||.|+-.|..| +.+|..|+++ || +|+++-...
T Consensus 16 ~~~mkIaVIGlG~mG-----~~lA~~la~~~G~~~V~~~D~~~ 53 (478)
T 3g79_A 16 GPIKKIGVLGMGYVG-----IPAAVLFADAPCFEKVLGFQRNS 53 (478)
T ss_dssp CSCCEEEEECCSTTH-----HHHHHHHHHSTTCCEEEEECCCC
T ss_pred CCCCEEEEECcCHHH-----HHHHHHHHHhCCCCeEEEEECCh
Confidence 457899999888777 5789999999 99 999987543
No 283
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=33.45 E-value=14 Score=31.91 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|||+++-. |.+ -..+|+.|.++||+|+++...
T Consensus 1 M~iiIiG~---G~~--G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIIIGG---ETT--AYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CCEEEECC---HHH--HHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECC---CHH--HHHHHHHHHhCCCeEEEEECC
Confidence 57777764 332 457899999999999999753
No 284
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=33.44 E-value=2.3e+02 Score=24.35 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
-|+++++.++.| --.++|+.|+++|++|.++....
T Consensus 7 ~k~vlITGas~g---IG~~~a~~l~~~G~~v~~~~~~~ 41 (255)
T 3icc_A 7 GKVALVTGASRG---IGRAIAKRLANDGALVAIHYGNR 41 (255)
T ss_dssp TCEEEETTCSSH---HHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCh---HHHHHHHHHHHCCCeEEEEeCCc
Confidence 367777766544 34688999999999998875443
No 285
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=33.43 E-value=84 Score=26.08 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=30.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
++++||+|+.+++.. ..-+....+.|.+.|++|++++..
T Consensus 7 ~~~~~v~il~~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~ 45 (190)
T 2vrn_A 7 LTGKKIAILAADGVE-EIELTSPRAAIEAAGGTTELISLE 45 (190)
T ss_dssp CTTCEEEEECCTTCB-HHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEEeCCCCC-HHHHHHHHHHHHHCCCEEEEEecC
Confidence 456899999876554 445666778888999999999974
No 286
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=33.39 E-value=47 Score=30.38 Aligned_cols=82 Identities=9% Similarity=0.062 Sum_probs=49.1
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhh
Q 044012 281 NSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLIL 360 (490)
Q Consensus 281 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll 360 (490)
+-.|.++--|-.....+.+..+...|.+.+..+.+..... . ....+ .+-+ +.
T Consensus 10 ~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~---~----------~~a~~-------------~~~~--~~ 61 (304)
T 3s40_A 10 KVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKE---Q----------GDATK-------------YCQE--FA 61 (304)
T ss_dssp SEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCS---T----------THHHH-------------HHHH--HT
T ss_pred EEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccC---c----------chHHH-------------HHHH--hh
Confidence 4456666544333234556677778888787766654332 1 01000 0011 11
Q ss_pred ccCCceeecccCChhHHHHHHH------hCCcEeeccC
Q 044012 361 EHQAIGGFLTHCGWNSILEGVS------AGVPMVTWPV 392 (490)
Q Consensus 361 ~~~~~~~~ItHGG~~s~~eal~------~GvP~l~~P~ 392 (490)
...++ +|.-||-||+.|++. .++|+.++|.
T Consensus 62 ~~~d~--vv~~GGDGTl~~v~~~l~~~~~~~~l~iiP~ 97 (304)
T 3s40_A 62 SKVDL--IIVFGGDGTVFECTNGLAPLEIRPTLAIIPG 97 (304)
T ss_dssp TTCSE--EEEEECHHHHHHHHHHHTTCSSCCEEEEEEC
T ss_pred cCCCE--EEEEccchHHHHHHHHHhhCCCCCcEEEecC
Confidence 24455 899999999999875 5799999997
No 287
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=33.37 E-value=48 Score=28.62 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=24.8
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
.+.|+|++. |+.|.+ -.+|++.|.++||+|+.+.-.
T Consensus 19 l~~~~ilVt--GatG~i--G~~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 19 FQGMRVLVV--GANGKV--ARYLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp --CCEEEEE--TTTSHH--HHHHHHHHHHTTCEEEEEESS
T ss_pred cCCCeEEEE--CCCChH--HHHHHHHHHhCCCeEEEEECC
Confidence 345777665 344443 357889999999999998854
No 288
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=33.31 E-value=2.1e+02 Score=23.80 Aligned_cols=143 Identities=14% Similarity=0.146 Sum_probs=77.7
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhc
Q 044012 282 SVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILE 361 (490)
Q Consensus 282 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~ 361 (490)
+.|-|-+||.+ +-+..++....++.++..+=+.+.+. .. .|+.+.+.. .+.. -.
T Consensus 22 ~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa---HR-------~p~~l~~~~-------------~~a~-~~ 75 (182)
T 1u11_A 22 PVVGIIMGSQS--DWETMRHADALLTELEIPHETLIVSA---HR-------TPDRLADYA-------------RTAA-ER 75 (182)
T ss_dssp CSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT---TT-------CHHHHHHHH-------------HHTT-TT
T ss_pred CEEEEEECcHH--HHHHHHHHHHHHHHcCCCeEEEEEcc---cC-------CHHHHHHHH-------------HHHH-hC
Confidence 34777778754 55667788888888888765544332 11 333221111 0000 01
Q ss_pred cCCceeecccCCh----hHHHHHHHhCCcEeeccCccc---ccchHHHHHHh--hcccee---eccccccccccCCCCcc
Q 044012 362 HQAIGGFLTHCGW----NSILEGVSAGVPMVTWPVFAE---QFNNEKLVTQV--LKFGLP---VGNEIWKIWATQDSPVI 429 (490)
Q Consensus 362 ~~~~~~~ItHGG~----~s~~eal~~GvP~l~~P~~~D---Q~~na~rv~e~--~G~G~~---l~~~~~~~~~~~~~~~~ 429 (490)
.+++ ||.=+|. .++..++ .-+|+|.+|.... ..+--.-.+ + .|+.+. +++. +..
T Consensus 76 g~~V--iIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlSiv-qmP~GvpVatV~I~~a----------~~~ 141 (182)
T 1u11_A 76 GLNV--IIAGAGGAAHLPGMCAAW-TRLPVLGVPVESRALKGMDSLLSIV-QMPGGVPVGTLAIGAS----------GAK 141 (182)
T ss_dssp TCCE--EEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHH-CCCTTSCCEECCSSHH----------HHH
T ss_pred CCcE--EEEecCchhhhHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHh-cCCCCCceEEEecCCc----------cch
Confidence 1233 6665543 3444444 5799999998542 111112232 4 455522 2211 135
Q ss_pred chhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcC
Q 044012 430 NRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEEG 470 (490)
Q Consensus 430 t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~~ 470 (490)
++.-++..|-.+ . + +.++++.+..+++.++.+.+.
T Consensus 142 nAallAaqIla~-~-d----~~l~~kL~~~r~~~~~~v~~~ 176 (182)
T 1u11_A 142 NAALLAASILAL-Y-N----PALAARLETWRALQTASVPNS 176 (182)
T ss_dssp HHHHHHHHHHGG-G-C----HHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHcc-C-C----HHHHHHHHHHHHHHHHHHHHh
Confidence 667677666533 3 4 589999999999888665443
No 289
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=33.29 E-value=41 Score=23.54 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=31.7
Q ss_pred hCCcEeeccCcccccchHHHHH--HhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 383 AGVPMVTWPVFAEQFNNEKLVT--QVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 383 ~GvP~l~~P~~~DQ~~na~rv~--e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
.|+|++++--...|.+.-..-- .+-|+...+-+ ...+++|.+.+++.|.
T Consensus 50 ngkplvvfvngasqndvnefqneakkegvsydvlk------------stdpeeltqrvreflk 100 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLK------------STDPEELTQRVREFLK 100 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEE------------CCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhcCcchhhhc------------cCCHHHHHHHHHHHHH
Confidence 6888888877666655332211 24455544443 4788999999998875
No 290
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=33.24 E-value=1.9e+02 Score=25.67 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+++++.++.| --.++|+.|+++|++|.++.-
T Consensus 12 k~~lVTGas~g---IG~aia~~la~~G~~V~~~~~ 43 (286)
T 3uve_A 12 KVAFVTGAARG---QGRSHAVRLAQEGADIIAVDI 43 (286)
T ss_dssp CEEEEESTTSH---HHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEeCCCch---HHHHHHHHHHHCCCeEEEEec
Confidence 66777755543 246899999999999988753
No 291
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=33.13 E-value=1.5e+02 Score=26.59 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEE
Q 044012 105 RPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAF 143 (490)
Q Consensus 105 ~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~ 143 (490)
..++.+.+++.+..+|+++..+. .+..+|+..|++.+.+
T Consensus 215 l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l 255 (284)
T 3cx3_A 215 LTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTL 255 (284)
T ss_dssp HHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEEEe
Confidence 46777888888999999998666 4677999999998765
No 292
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=33.02 E-value=27 Score=31.49 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|||+|+-.|..| ..+|..|+++||+|+++..
T Consensus 1 m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r 31 (291)
T 1ks9_A 1 MKITVLGCGALG-----QLWLTALCKQGHEVQGWLR 31 (291)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CeEEEECcCHHH-----HHHHHHHHhCCCCEEEEEc
Confidence 578888665544 4789999999999999865
No 293
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=32.90 E-value=50 Score=27.61 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=26.6
Q ss_pred cceEEEEcCCCCCChHHHH-HHHHHHHH-CCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMV-DMARLFAA-NGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l-~LA~~L~~-rGh~Vt~~~~~ 44 (490)
||||+++-....|+..-+. .+++.|.+ .|++|.++--.
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 4688888766677766644 45677777 89999887643
No 294
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=32.89 E-value=62 Score=23.87 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=24.7
Q ss_pred HHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecccH
Q 044012 110 KLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSGF 148 (490)
Q Consensus 110 ~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 148 (490)
+.+++.+||+||.|...+ .+..+.+.+ ++|.+.++....
T Consensus 41 ~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 41 EKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp HHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTC
T ss_pred HHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 334445799999997654 344444433 588888766543
No 295
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=32.85 E-value=51 Score=28.71 Aligned_cols=37 Identities=5% Similarity=0.047 Sum_probs=28.8
Q ss_pred CcceEEEEcC-CCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 6 QKLHVMFLPY-IAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~~-~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+|..|++... ++.|-..-...|++.|+++|++|.+.=
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 3444444444 366999999999999999999999975
No 296
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=32.67 E-value=71 Score=27.31 Aligned_cols=46 Identities=13% Similarity=-0.026 Sum_probs=33.0
Q ss_pred cccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEE
Q 044012 271 CLSWLNSRKPNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWV 316 (490)
Q Consensus 271 ~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 316 (490)
+.+|+.....+.++||..+|......+.+....++|+++|+.+.+.
T Consensus 18 ~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~ 63 (206)
T 3l4e_A 18 FTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL 63 (206)
T ss_dssp HHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4456543345779999988765445567888999999999986554
No 297
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=32.65 E-value=1.7e+02 Score=22.62 Aligned_cols=47 Identities=4% Similarity=-0.089 Sum_probs=32.0
Q ss_pred hCCcEeeccCcccccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 383 AGVPMVTWPVFAEQFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 383 ~GvP~l~~P~~~DQ~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
..+|+|++--..+ ......+ -+.|+--.+.+ .++.++|..+|++++.
T Consensus 74 ~~~pii~ls~~~~-~~~~~~~-~~~g~~~~l~k------------P~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 74 PDLPMILVTGHGD-IPMAVQA-IQDGAYDFIAK------------PFAADRLVQSARRAEE 120 (155)
T ss_dssp TTSCEEEEECGGG-HHHHHHH-HHTTCCEEEES------------SCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCC-hHHHHHH-HhcCCCeEEeC------------CCCHHHHHHHHHHHHH
Confidence 4788888754433 3344444 25666555554 4899999999999987
No 298
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=32.61 E-value=2.3e+02 Score=25.55 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEecc
Q 044012 105 RPEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 105 ~~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~~~ 146 (490)
..++.+.+++.+..+|+++..+. .+..+|+..|++.+.+.+.
T Consensus 226 l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld~l 269 (291)
T 1pq4_A 226 LKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLDPL 269 (291)
T ss_dssp HHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEECTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEEcCc
Confidence 46778888889999999998666 4777999999998876443
No 299
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=32.33 E-value=77 Score=27.99 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=24.9
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+++++. |.++++.++ |- =-.++++.|+++|++|+++.-
T Consensus 1 M~~m~~~-k~vlVTGas-~g--IG~~ia~~l~~~G~~V~~~~r 39 (267)
T 2gdz_A 1 MAHMVNG-KVALVTGAA-QG--IGRAFAEALLLKGAKVALVDW 39 (267)
T ss_dssp -CCCCTT-CEEEEETTT-SH--HHHHHHHHHHHTTCEEEEEES
T ss_pred CCcccCC-CEEEEECCC-Cc--HHHHHHHHHHHCCCEEEEEEC
Confidence 5554443 445555333 32 236789999999999998764
No 300
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=32.30 E-value=61 Score=24.68 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=26.1
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 148 (490)
+..+.+++.+||+||.|...+ .+..+.+.+ .+|.|+++....
T Consensus 40 ~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 88 (133)
T 3b2n_A 40 DAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKR 88 (133)
T ss_dssp HHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred HHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCC
Confidence 334445556899999997554 344444433 578888766543
No 301
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=32.29 E-value=85 Score=24.35 Aligned_cols=40 Identities=5% Similarity=0.009 Sum_probs=27.6
Q ss_pred eEEE-EcCCCCC--ChHHHHHHHHHHHHCCCeE-EEEeCCcchh
Q 044012 9 HVMF-LPYIAPG--HMVPMVDMARLFAANGIQV-TIILTTMNAR 48 (490)
Q Consensus 9 ~Il~-~~~~~~G--Hi~p~l~LA~~L~~rGh~V-t~~~~~~~~~ 48 (490)
|++| +..+.+| .....+.+|.++.+.||+| .++...+...
T Consensus 2 k~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff~~dGV~ 45 (130)
T 2hy5_A 2 KFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHDGVN 45 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGGGGG
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEEechHHH
Confidence 4443 4444454 3456788999999999999 8888754433
No 302
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Probab=32.21 E-value=35 Score=31.63 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=28.4
Q ss_pred cccccccCCCCCCeEEEEEeCCcc---cCCHHHHHHHHHHHHHcCCceEEEEc
Q 044012 269 HSCLSWLNSRKPNSVLYICFGSLT---RFSKEQTSEIAAALKESGHSFIWVVG 318 (490)
Q Consensus 269 ~~~~~~l~~~~~~~~v~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~ 318 (490)
.++.+.++..+-+++ .+|+.. ....+.+..+++.+++.+..+++=.+
T Consensus 127 ~el~~~~~~~g~~Gv---~l~~~~~~~~l~d~~~~~~~~~~~e~~lpv~iH~~ 176 (336)
T 2wm1_A 127 KEMERCVKELGFPGV---QIGTHVNEWDLNAQELFPVYAAAERLKCSLFVHPW 176 (336)
T ss_dssp HHHHHHHHTSCCSEE---EEESEETTEETTCGGGHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHccCCeEE---EECCcCCCCCCCCccHHHHHHHHHHcCCEEEECCC
Confidence 456666643333333 334332 24556788999999999988766554
No 303
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=32.20 E-value=19 Score=32.20 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=23.9
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCe-EEEEe
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQ-VTIIL 42 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~-Vt~~~ 42 (490)
|....++|||.|+-.|..| ..+|+.|.+.||+ |+++.
T Consensus 4 m~~~~~~m~i~iiG~G~mG-----~~~a~~l~~~g~~~v~~~~ 41 (266)
T 3d1l_A 4 MKRSIEDTPIVLIGAGNLA-----TNLAKALYRKGFRIVQVYS 41 (266)
T ss_dssp ---CGGGCCEEEECCSHHH-----HHHHHHHHHHTCCEEEEEC
T ss_pred hhcCCCCCeEEEEcCCHHH-----HHHHHHHHHCCCeEEEEEe
Confidence 4444456899998755444 3568888888999 55553
No 304
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=32.18 E-value=29 Score=32.83 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=25.2
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+++|||.|+-.+..| ..+|+.|+++||+|+++..
T Consensus 20 m~~mkIgiIGlG~mG-----~~~A~~L~~~G~~V~v~dr 53 (358)
T 4e21_A 20 FQSMQIGMIGLGRMG-----ADMVRRLRKGGHECVVYDL 53 (358)
T ss_dssp --CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred hcCCEEEEECchHHH-----HHHHHHHHhCCCEEEEEeC
Confidence 355899999655443 5788999999999998754
No 305
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=32.13 E-value=53 Score=25.21 Aligned_cols=41 Identities=15% Similarity=0.015 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCCCh--HHHHHHHHHHHHCC--CeEEEEeCCcchh
Q 044012 8 LHVMFLPYIAPGHM--VPMVDMARLFAANG--IQVTIILTTMNAR 48 (490)
Q Consensus 8 ~~Il~~~~~~~GHi--~p~l~LA~~L~~rG--h~Vt~~~~~~~~~ 48 (490)
+|++|+-+-+.-.. +..+..|....++| |+|.++......+
T Consensus 8 ~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~ 52 (117)
T 2fb6_A 8 DKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGASVK 52 (117)
T ss_dssp SEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHH
T ss_pred CeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeee
Confidence 78877776543222 34677899999999 8999999866555
No 306
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=32.10 E-value=46 Score=30.35 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=25.1
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
||+|++. |+.|.+- ..|+++|.++||+|+.++-..
T Consensus 4 ~~~ilVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIY--GGTGYIG--KFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp CCCEEEE--TTTSTTH--HHHHHHHHHTTCCEEEEECCC
T ss_pred ccEEEEE--cCCchhH--HHHHHHHHhCCCcEEEEECCc
Confidence 5666665 4445543 468899999999999988643
No 307
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=31.90 E-value=21 Score=27.94 Aligned_cols=33 Identities=9% Similarity=0.119 Sum_probs=23.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
++.||+++.. |.+- ..+++.|.++|++|+++..
T Consensus 5 ~~~~v~I~G~---G~iG--~~~a~~l~~~g~~v~~~d~ 37 (144)
T 2hmt_A 5 KNKQFAVIGL---GRFG--GSIVKELHRMGHEVLAVDI 37 (144)
T ss_dssp -CCSEEEECC---SHHH--HHHHHHHHHTTCCCEEEES
T ss_pred cCCcEEEECC---CHHH--HHHHHHHHHCCCEEEEEeC
Confidence 3557888764 4433 4678999999999998865
No 308
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=31.79 E-value=46 Score=27.93 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=27.7
Q ss_pred ceEEEEcCCC--C-CChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 8 LHVMFLPYIA--P-GHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 8 ~~Il~~~~~~--~-GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.+|+++|.=+ . =--++...|++.|.++|.+|.|..+|-
T Consensus 47 ~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPV 87 (203)
T 2fsv_C 47 SKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPV 87 (203)
T ss_dssp SEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4677776211 1 123578899999999999999999863
No 309
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=31.73 E-value=36 Score=31.20 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=29.8
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc-hhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMN-ARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~-~~~~~~~ 53 (490)
+|||+|+-.|+.|- .+|..|+ +||+|+++..... .+.+.+.
T Consensus 2 ~mkI~IiGaGa~G~-----~~a~~L~-~g~~V~~~~r~~~~~~~l~~~ 43 (307)
T 3ego_A 2 SLKIGIIGGGSVGL-----LCAYYLS-LYHDVTVVTRRQEQAAAIQSE 43 (307)
T ss_dssp CCEEEEECCSHHHH-----HHHHHHH-TTSEEEEECSCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHH-----HHHHHHh-cCCceEEEECCHHHHHHHHhC
Confidence 37999998777764 6788888 9999999986542 2344443
No 310
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=31.65 E-value=2e+02 Score=25.32 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+++++.++.| --.++|+.|+++|++|.++.-
T Consensus 11 k~vlVTGas~g---IG~~ia~~l~~~G~~V~~~~~ 42 (287)
T 3pxx_A 11 KVVLVTGGARG---QGRSHAVKLAEEGADIILFDI 42 (287)
T ss_dssp CEEEEETTTSH---HHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEeCCCCh---HHHHHHHHHHHCCCeEEEEcc
Confidence 56777755543 346899999999999998764
No 311
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=31.63 E-value=49 Score=30.72 Aligned_cols=36 Identities=8% Similarity=-0.053 Sum_probs=25.5
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+++|+|++. |+.|-+ -..|++.|.++||+|+.+.-.
T Consensus 25 ~~~~~vlVt--GatG~i--G~~l~~~L~~~g~~V~~~~r~ 60 (352)
T 1sb8_A 25 AQPKVWLIT--GVAGFI--GSNLLETLLKLDQKVVGLDNF 60 (352)
T ss_dssp HSCCEEEEE--TTTSHH--HHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCeEEEE--CCCcHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 356777665 444444 357889999999999998753
No 312
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=31.36 E-value=47 Score=27.97 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=27.8
Q ss_pred ceEEEEcCCC--C-CChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 8 LHVMFLPYIA--P-GHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 8 ~~Il~~~~~~--~-GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.+|+++|.=+ . =--++...|++.|.++|.+|.|..+|-
T Consensus 46 ~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPV 86 (207)
T 1djl_A 46 NSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPV 86 (207)
T ss_dssp SEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCcc
Confidence 4677776211 1 124568899999999999999999863
No 313
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=31.36 E-value=50 Score=24.95 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=29.3
Q ss_pred CCcceEEEEcCCCCCChHHHH-HHHHHHHHCCCe-EEEEe
Q 044012 5 NQKLHVMFLPYIAPGHMVPMV-DMARLFAANGIQ-VTIIL 42 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l-~LA~~L~~rGh~-Vt~~~ 42 (490)
.+++||++++..+.|+-.-+. .|-+.+.++|.+ +.+-.
T Consensus 16 ~~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~ 55 (110)
T 3czc_A 16 GSMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESAS 55 (110)
T ss_dssp --CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 356899999999999988877 777888889988 65444
No 314
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=31.31 E-value=69 Score=24.59 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 148 (490)
+..+.+++.+||+||.|. .. .+..+.+.+ .+|.|.++....
T Consensus 39 ~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (142)
T 2qxy_A 39 EAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVD 86 (142)
T ss_dssp HHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCC
T ss_pred HHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCC
Confidence 444556667899999997 44 233333332 588888866543
No 315
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=31.23 E-value=85 Score=23.18 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHhhcCCCcEEEEcCCCc--chHHHHHH----hCCCeEEEecccH
Q 044012 108 IEKLFREQNPNCIVSDNLFP--WTVSIAEE----LGIPRLAFTGSGF 148 (490)
Q Consensus 108 l~~~l~~~~pD~VI~D~~~~--~~~~~A~~----lgiP~v~~~~~~~ 148 (490)
..+.+++.+||+||.|...+ .+..+.+. -.+|.+.++....
T Consensus 39 a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~ 85 (123)
T 1xhf_A 39 MHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDN 85 (123)
T ss_dssp HHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCCS
T ss_pred HHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCCC
Confidence 33445566899999997554 34444443 3688887766543
No 316
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=31.08 E-value=59 Score=30.03 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=32.6
Q ss_pred ceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 8 LHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 8 ~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
++|+|++ -|+.|-..-...||..|+++|++|.++....
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5666655 5588999999999999999999999999876
No 317
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=31.07 E-value=67 Score=29.49 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
.|.++++.++. -+ -.+||+.|+++|++|.++.-.
T Consensus 8 ~k~vlVTGas~-gI--G~~la~~l~~~G~~Vv~~~r~ 41 (319)
T 3ioy_A 8 GRTAFVTGGAN-GV--GIGLVRQLLNQGCKVAIADIR 41 (319)
T ss_dssp TCEEEEETTTS-TH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEcCCch-HH--HHHHHHHHHHCCCEEEEEECC
Confidence 35666664443 33 358899999999998887643
No 318
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=30.99 E-value=66 Score=29.03 Aligned_cols=38 Identities=11% Similarity=-0.042 Sum_probs=27.5
Q ss_pred cceEEEEcCCCC-CChH---HHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAP-GHMV---PMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~-GHi~---p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+|||+++..+.. -|-. ....++++|.++||+|.++...
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 368988875422 2222 3468999999999999998865
No 319
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=30.99 E-value=48 Score=28.16 Aligned_cols=30 Identities=7% Similarity=0.157 Sum_probs=25.0
Q ss_pred cCCceeecccCChhHHHHHHHhCCcEeeccCcc
Q 044012 362 HQAIGGFLTHCGWNSILEGVSAGVPMVTWPVFA 394 (490)
Q Consensus 362 ~~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~ 394 (490)
.+++ +|+.||.......- .++|+|-++..+
T Consensus 51 ~~dV--IISRGgta~~lr~~-~~iPVV~I~~s~ 80 (196)
T 2q5c_A 51 EVDA--IISRGATSDYIKKS-VSIPSISIKVTR 80 (196)
T ss_dssp TCSE--EEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CCeE--EEECChHHHHHHHh-CCCCEEEEcCCH
Confidence 4556 99999999988875 689999999865
No 320
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=30.78 E-value=28 Score=31.67 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=25.7
Q ss_pred hhccCCceeecccCChhHHHHHHHh----CCcEeecc
Q 044012 359 ILEHQAIGGFLTHCGWNSILEGVSA----GVPMVTWP 391 (490)
Q Consensus 359 ll~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P 391 (490)
.-..+++ +|+=||=||+.+++.. ++|.+.++
T Consensus 60 ~~~~~D~--vi~~GGDGT~l~a~~~~~~~~~P~lGI~ 94 (292)
T 2an1_A 60 IGQQADL--AVVVGGDGNMLGAARTLARYDINVIGIN 94 (292)
T ss_dssp HHHHCSE--EEECSCHHHHHHHHHHHTTSSCEEEEBC
T ss_pred cccCCCE--EEEEcCcHHHHHHHHHhhcCCCCEEEEE
Confidence 3445677 9999999999999853 78999997
No 321
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=30.70 E-value=96 Score=29.68 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~ 43 (490)
|||+++..++ .+.+++..++++ |++++++.+
T Consensus 1 m~ililG~g~-----r~~~~a~~~~~~~g~~~v~~~~ 32 (424)
T 2yw2_A 1 MKVLVVGNGG-----REHAIAWKVAQSPLVKELYVAK 32 (424)
T ss_dssp CEEEEEESSH-----HHHHHHHHHTTCTTCSEEEEEE
T ss_pred CEEEEECCCH-----HHHHHHHHHhhCCCCCEEEEEC
Confidence 5888887663 467888888765 899888865
No 322
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=30.69 E-value=79 Score=23.17 Aligned_cols=39 Identities=21% Similarity=0.435 Sum_probs=24.7
Q ss_pred HHhhcCCCcEEEEcCCCc--chHHHHHH----hCCCeEEEecccH
Q 044012 110 KLFREQNPNCIVSDNLFP--WTVSIAEE----LGIPRLAFTGSGF 148 (490)
Q Consensus 110 ~~l~~~~pD~VI~D~~~~--~~~~~A~~----lgiP~v~~~~~~~ 148 (490)
+.++..+||+||.|...+ .+..+.+. -.+|.+.++....
T Consensus 39 ~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~ 83 (120)
T 2a9o_A 39 EQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDS 83 (120)
T ss_dssp HHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCS
T ss_pred HHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCc
Confidence 334455899999997554 34444433 3688888866543
No 323
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=30.57 E-value=96 Score=28.68 Aligned_cols=81 Identities=17% Similarity=0.013 Sum_probs=0.0
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhh
Q 044012 280 PNSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLI 359 (490)
Q Consensus 280 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~l 359 (490)
++-.|+++--|-.. +....+.+.+.+.+..+.+..... +.. ..-+-...+
T Consensus 30 ~~~~vi~Np~sg~~---~~~~~i~~~l~~~g~~~~~~~t~~------------------------~~~---~~~~~~~~~ 79 (332)
T 2bon_A 30 PASLLILNGKSTDN---LPLREAIMLLREEGMTIHVRVTWE------------------------KGD---AARYVEEAR 79 (332)
T ss_dssp CCEEEEECSSSTTC---HHHHHHHHHHHTTTCCEEEEECCS------------------------TTH---HHHHHHHHH
T ss_pred ceEEEEECCCCCCC---chHHHHHHHHHHcCCcEEEEEecC------------------------cch---HHHHHHHHH
Q ss_pred hccCCceeecccCChhHHHHHH--------HhCCcEeeccC
Q 044012 360 LEHQAIGGFLTHCGWNSILEGV--------SAGVPMVTWPV 392 (490)
Q Consensus 360 l~~~~~~~~ItHGG~~s~~eal--------~~GvP~l~~P~ 392 (490)
...+++ +|.-||=||+.|++ ..++|+.++|.
T Consensus 80 ~~~~d~--vvv~GGDGTl~~v~~~l~~~~~~~~~plgiiP~ 118 (332)
T 2bon_A 80 KFGVAT--VIAGGGDGTINEVSTALIQCEGDDIPALGILPL 118 (332)
T ss_dssp HHTCSE--EEEEESHHHHHHHHHHHHHCCSSCCCEEEEEEC
T ss_pred hcCCCE--EEEEccchHHHHHHHHHhhcccCCCCeEEEecC
No 324
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=30.56 E-value=32 Score=32.02 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=26.5
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.|||.|+-.|..| ..+|..|++.||+|+++..
T Consensus 14 ~~kI~iIG~G~mG-----~ala~~L~~~G~~V~~~~r 45 (335)
T 1z82_A 14 EMRFFVLGAGSWG-----TVFAQMLHENGEEVILWAR 45 (335)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCcEEEECcCHHH-----HHHHHHHHhCCCeEEEEeC
Confidence 4799999776666 5789999999999998865
No 325
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=30.53 E-value=2.3e+02 Score=23.32 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=76.5
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhh
Q 044012 281 NSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLIL 360 (490)
Q Consensus 281 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll 360 (490)
+|.|-|-+||.+ +-+..++....++.++..+=+.+.+. .. .|+.+.+.. .+.. -
T Consensus 11 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa---HR-------~p~~l~~~~-------------~~a~-~ 64 (170)
T 1xmp_A 11 KSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSA---HR-------TPDYMFEYA-------------ETAR-E 64 (170)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT---TT-------SHHHHHHHH-------------HHTT-T
T ss_pred CCcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEec---cC-------CHHHHHHHH-------------HHHH-h
Confidence 445777788764 55667788888888888765554332 11 333221111 0000 0
Q ss_pred ccCCceeecccCChh----HHHHHHHhCCcEeeccCccc---ccchHHHHHHh--hcccee---eccccccccccCCCCc
Q 044012 361 EHQAIGGFLTHCGWN----SILEGVSAGVPMVTWPVFAE---QFNNEKLVTQV--LKFGLP---VGNEIWKIWATQDSPV 428 (490)
Q Consensus 361 ~~~~~~~~ItHGG~~----s~~eal~~GvP~l~~P~~~D---Q~~na~rv~e~--~G~G~~---l~~~~~~~~~~~~~~~ 428 (490)
..+++ ||.=+|.. ++..++ .-+|+|.+|.... ..+--.-.+ + .|+.+. +++. +.
T Consensus 65 ~g~~V--iIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~daLlSiv-qmP~GvpVatV~I~~a----------~~ 130 (170)
T 1xmp_A 65 RGLKV--IIAGAGGAAHLPGMVAAK-TNLPVIGVPVQSKALNGLDSLLSIV-QMPGGVPVATVAIGKA----------GS 130 (170)
T ss_dssp TTCCE--EEEEEESSCCHHHHHHTT-CCSCEEEEEECCTTTTTHHHHHHHH-CCCTTCCCEECCSSHH----------HH
T ss_pred CCCcE--EEEECCchhhhHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHh-cCCCCCeeEEEecCCc----------ch
Confidence 11233 66655533 333332 4689999998542 111112222 3 444421 2211 13
Q ss_pred cchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc
Q 044012 429 INRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAVEE 469 (490)
Q Consensus 429 ~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~~~ 469 (490)
.++.-++..|-.+ . + +.++++.+.++++.++.+.+
T Consensus 131 ~nAallAaqIla~-~-d----~~l~~kl~~~r~~~~~~v~~ 165 (170)
T 1xmp_A 131 TNAGLLAAQILGS-F-H----DDIHDALELRREAIEKDVRE 165 (170)
T ss_dssp HHHHHHHHHHHHT-T-C----HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcc-C-C----HHHHHHHHHHHHHHHHHHHh
Confidence 5677777666544 3 4 58999999999888865543
No 326
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=30.50 E-value=65 Score=23.99 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=23.6
Q ss_pred HhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEeccc
Q 044012 111 LFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSG 147 (490)
Q Consensus 111 ~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 147 (490)
.++..+||+||.|...+ .+..+.+.+ .+|.|.++...
T Consensus 42 ~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 42 IVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp HHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccC
Confidence 34445899999997554 344444433 58888876654
No 327
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=30.39 E-value=64 Score=32.62 Aligned_cols=47 Identities=6% Similarity=0.023 Sum_probs=39.5
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
.+.+|++.+.++-.|-....-++..|..+|++|+.+....-.+.+..
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~ 143 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILR 143 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 36799999999999999999999999999999999877555444433
No 328
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=30.20 E-value=74 Score=24.14 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=25.6
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.++.++++|+++- .+-.-...|.+.|.+.|++|..+.+
T Consensus 1 Ms~~~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~ 39 (136)
T 3hdv_A 1 MSLVAARPLVLVVD----DNAVNREALILYLKSRGIDAVGADG 39 (136)
T ss_dssp ------CCEEEEEC----SCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred CCCCCCCCeEEEEC----CCHHHHHHHHHHHHHcCceEEEeCC
Confidence 66666788999986 4555666788888888999887654
No 329
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=30.17 E-value=38 Score=30.56 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=24.3
Q ss_pred cceEEEEcC-CCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPY-IAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~-~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
||||+|+-. |..| ..+|+.|+++||+|+++..
T Consensus 11 mm~I~iIG~tG~mG-----~~la~~l~~~g~~V~~~~r 43 (286)
T 3c24_A 11 PKTVAILGAGGKMG-----ARITRKIHDSAHHLAAIEI 43 (286)
T ss_dssp CCEEEEETTTSHHH-----HHHHHHHHHSSSEEEEECC
T ss_pred CCEEEEECCCCHHH-----HHHHHHHHhCCCEEEEEEC
Confidence 469999876 5444 5678899999999987653
No 330
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=30.17 E-value=24 Score=32.49 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=24.4
Q ss_pred hhccCCceeecccCChhHHHHHHHh----CCcEeeccC
Q 044012 359 ILEHQAIGGFLTHCGWNSILEGVSA----GVPMVTWPV 392 (490)
Q Consensus 359 ll~~~~~~~~ItHGG~~s~~eal~~----GvP~l~~P~ 392 (490)
....+++ +|.-||-||+.+++.. ++|++.++.
T Consensus 72 ~~~~~d~--vi~~GGDGT~l~a~~~~~~~~~pvlgi~~ 107 (307)
T 1u0t_A 72 AADGCEL--VLVLGGDGTFLRAAELARNASIPVLGVNL 107 (307)
T ss_dssp ----CCC--EEEEECHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred cccCCCE--EEEEeCCHHHHHHHHHhccCCCCEEEEeC
Confidence 4456777 9999999999999854 899999973
No 331
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=30.14 E-value=62 Score=28.53 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+++++.++.| --.++|+.|+++|++|.++.-
T Consensus 9 k~~lVTGas~g---IG~a~a~~l~~~G~~V~~~~r 40 (255)
T 4eso_A 9 KKAIVIGGTHG---MGLATVRRLVEGGAEVLLTGR 40 (255)
T ss_dssp CEEEEETCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 56667755443 236899999999999988764
No 332
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=30.08 E-value=51 Score=29.87 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=24.5
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+++|++. |+.|.+- ..|+++|.++||+|+.++-.
T Consensus 4 ~~~ilVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~ 37 (313)
T 1qyd_A 4 KSRVLIV--GGTGYIG--KRIVNASISLGHPTYVLFRP 37 (313)
T ss_dssp CCCEEEE--STTSTTH--HHHHHHHHHTTCCEEEECCS
T ss_pred CCEEEEE--cCCcHHH--HHHHHHHHhCCCcEEEEECC
Confidence 5677666 4445443 56789999999999988754
No 333
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=30.00 E-value=43 Score=30.24 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=24.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
|++|++. |+.|.+- ..|+++|.++||+|+.++-..
T Consensus 2 ~~~vlVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILIL--GPTGAIG--RHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEE--STTSTTH--HHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEE--CCCchHH--HHHHHHHHhCCCcEEEEECCC
Confidence 4676665 4445443 467899999999999887543
No 334
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=29.92 E-value=83 Score=26.06 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+|++. |+.|-+ -..|++.|.++||+|+.+.-
T Consensus 4 ~~ilVt--GatG~i--G~~l~~~l~~~g~~V~~~~r 35 (206)
T 1hdo_A 4 KKIAIF--GATGQT--GLTTLAQAVQAGYEVTVLVR 35 (206)
T ss_dssp CEEEEE--STTSHH--HHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEE--cCCcHH--HHHHHHHHHHCCCeEEEEEe
Confidence 577665 444433 46789999999999999875
No 335
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=29.80 E-value=1.4e+02 Score=23.09 Aligned_cols=47 Identities=4% Similarity=-0.081 Sum_probs=29.5
Q ss_pred hCCcEeeccCcccccchHHHHHHhhc-cceeeccccccccccCCCCccchhHHHHHHHHHhc
Q 044012 383 AGVPMVTWPVFAEQFNNEKLVTQVLK-FGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMD 443 (490)
Q Consensus 383 ~GvP~l~~P~~~DQ~~na~rv~e~~G-~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~ 443 (490)
..+|+|++--..+ ......+. +.| +--.+.+ .++.++|..+|++++.
T Consensus 78 ~~~~ii~ls~~~~-~~~~~~~~-~~g~~~~~l~k------------P~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 78 PDIERVVISGYAD-AQATIDAV-NRGKISRFLLK------------PWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp TTSEEEEEECGGG-HHHHHHHH-HTTCCSEEEES------------SCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCC-HHHHHHHH-hccchheeeeC------------CCCHHHHHHHHHHHHH
Confidence 4688887744333 23333332 445 4334444 4899999999999987
No 336
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=29.72 E-value=1.1e+02 Score=22.50 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 148 (490)
+..+.+++.+||+||.|.... .+..+.+.+ .+|.|.++....
T Consensus 35 ~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 83 (121)
T 2pl1_A 35 EADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARES 83 (121)
T ss_dssp HHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCC
T ss_pred HHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 334455567899999997554 344444332 578888766543
No 337
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1
Probab=29.41 E-value=1.8e+02 Score=24.28 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=40.0
Q ss_pred ccchHHHHHHhhccceeeccccccccccCCCCccchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 044012 396 QFNNEKLVTQVLKFGLPVGNEIWKIWATQDSPVINRGNIKNAICVVMDNDDQEAVKMRKKANHLKELA 463 (490)
Q Consensus 396 Q~~na~rv~e~~G~G~~l~~~~~~~~~~~~~~~~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~ 463 (490)
+..|+++- ++.|.-..+... ..+.++|.+++++-|.|+ .+ .+.+..+.++.+-.
T Consensus 117 ~~LN~~Ye-~kFGfpFVi~v~-----------G~s~~~IL~~l~~RL~N~-~~-~E~~~Al~Ev~kIa 170 (181)
T 2q37_A 117 AEWNVLYK-KKFGFIFIICAS-----------GRTHAEMLHALKERYENR-PI-VELEIAAMEQMKIT 170 (181)
T ss_dssp HHHHHHHH-HHHSSCCCCCCS-----------SCCHHHHHHHHHHHTTSC-HH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHcCCeEEEEeC-----------CCCHHHHHHHHHHHHCCC-HH-HHHHHHHHHHHHHH
Confidence 45688888 699988888877 789999999999999965 22 25555555555443
No 338
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=29.36 E-value=48 Score=29.41 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=31.5
Q ss_pred CcceEEEEc--CCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 6 QKLHVMFLP--YIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 6 ~~~~Il~~~--~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
+++|++.+. -|+-|-..-...||..|+ +|++|.++=.....
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 456666665 447788999999999999 99999999765443
No 339
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=29.33 E-value=77 Score=27.42 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=26.2
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|++..+.+ .++++ |+.|-+ -.++++.|+++|++|+++.-.
T Consensus 1 m~~~~~~~-~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~ 40 (248)
T 2pnf_A 1 MEIKLQGK-VSLVT-GSTRGI--GRAIAEKLASAGSTVIITGTS 40 (248)
T ss_dssp CCCCCTTC-EEEET-TCSSHH--HHHHHHHHHHTTCEEEEEESS
T ss_pred CccccCCC-EEEEE-CCCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 65554444 45555 333432 457899999999999988753
No 340
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=29.27 E-value=1.5e+02 Score=28.59 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.||+++.. | ...+.+++++.+.|++|+++.+
T Consensus 3 k~ilI~g~---g--~~~~~~~~a~~~~G~~vv~v~~ 33 (449)
T 2w70_A 3 DKIVIANR---G--EIALRILRACKELGIKTVAVHS 33 (449)
T ss_dssp SEEEECCC---H--HHHHHHHHHHHHHTCEEEEEEE
T ss_pred ceEEEeCC---c--HHHHHHHHHHHHcCCeEEEEec
Confidence 47777653 3 3456799999999999998865
No 341
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=29.26 E-value=2.7e+02 Score=24.67 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=24.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|+++++.++.| =-.++|+.|+++|++|.++.-.
T Consensus 10 k~vlVTGas~G---IG~aia~~l~~~G~~V~~~~r~ 42 (285)
T 3sc4_A 10 KTMFISGGSRG---IGLAIAKRVAADGANVALVAKS 42 (285)
T ss_dssp CEEEEESCSSH---HHHHHHHHHHTTTCEEEEEESC
T ss_pred CEEEEECCCCH---HHHHHHHHHHHCCCEEEEEECC
Confidence 56667755543 2358899999999999888754
No 342
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=29.24 E-value=91 Score=26.87 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=24.8
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|...++.+++++. |+.|-+ -.++++.|+++|++|+++.-
T Consensus 1 m~~~~~~~~vlVT--Gasggi--G~~~a~~l~~~G~~V~~~~r 39 (244)
T 1cyd_A 1 MKLNFSGLRALVT--GAGKGI--GRDTVKALHASGAKVVAVTR 39 (244)
T ss_dssp --CCCTTCEEEEE--STTSHH--HHHHHHHHHHTTCEEEEEES
T ss_pred CccCCCCCEEEEe--CCCchH--HHHHHHHHHHCCCEEEEEeC
Confidence 4444555565544 333433 35789999999999988764
No 343
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=29.21 E-value=1.1e+02 Score=25.25 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=38.1
Q ss_pred HHHHHHhhHHHHHHHhhcCCCcEEEEcCCCcc---------------hHHHHHHhCCCeEEEecccHH
Q 044012 97 LFPALELLRPEIEKLFREQNPNCIVSDNLFPW---------------TVSIAEELGIPRLAFTGSGFF 149 (490)
Q Consensus 97 ~~~~~~~~~~~l~~~l~~~~pD~VI~D~~~~~---------------~~~~A~~lgiP~v~~~~~~~~ 149 (490)
+......+...+.+++++.+||.+.++..++. +..++...|+|+.-+++...-
T Consensus 44 ~~~RL~~I~~~l~~~i~~~~Pd~vaiE~~F~~~n~~sal~lgqarGv~~la~~~~glpv~eytP~~vK 111 (166)
T 4ep4_A 44 AKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVK 111 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEECCCCSSCSHHHHHHHHHHHHHHHHHHHHTCCEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeehhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHH
Confidence 33444566788899999999999999885541 235567789998887665444
No 344
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=29.20 E-value=62 Score=29.72 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=25.1
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC-C-CeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN-G-IQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r-G-h~Vt~~~~~ 44 (490)
|++|||+++..+.. .+|++.|++. | ++|..+...
T Consensus 2 m~~~~Ili~g~g~~------~~l~~~l~~~~~~~~v~~~d~~ 37 (331)
T 2pn1_A 2 MQKPHLLITSAGRR------AKLVEYFVKEFKTGRVSTADCS 37 (331)
T ss_dssp TTCCEEEEESCTTC------HHHHHHHHHHCCSSEEEEEESC
T ss_pred CccceEEEecCCch------HHHHHHHHHhcCCCEEEEEeCC
Confidence 35689999865554 4789999876 7 888877653
No 345
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=29.15 E-value=2.7e+02 Score=24.53 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+++++.++.| =-.++|+.|+++|++|.++.-
T Consensus 16 k~~lVTGas~g---IG~a~a~~la~~G~~V~~~~r 47 (280)
T 3pgx_A 16 RVAFITGAARG---QGRSHAVRLAAEGADIIACDI 47 (280)
T ss_dssp CEEEEESTTSH---HHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcH---HHHHHHHHHHHCCCEEEEEec
Confidence 66777755542 236899999999999998753
No 346
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=29.11 E-value=83 Score=24.24 Aligned_cols=39 Identities=13% Similarity=0.340 Sum_probs=24.2
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEec
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTG 145 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~ 145 (490)
+..+.++..+||+||.|...+ .+..+.+.+ ++|.|+++.
T Consensus 40 ~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~ 85 (141)
T 3cu5_A 40 NAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSG 85 (141)
T ss_dssp HHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECC
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeC
Confidence 334455667899999997554 344444433 577776644
No 347
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=29.06 E-value=35 Score=31.26 Aligned_cols=33 Identities=9% Similarity=0.187 Sum_probs=22.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
||+|++. |+.|-+ -..|++.|.++||+|+.+.-
T Consensus 1 M~~ilVt--GatG~i--G~~l~~~L~~~g~~V~~~~r 33 (330)
T 2c20_A 1 MNSILIC--GGAGYI--GSHAVKKLVDEGLSVVVVDN 33 (330)
T ss_dssp -CEEEEE--TTTSHH--HHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEE--CCCcHH--HHHHHHHHHhCCCEEEEEeC
Confidence 4566655 334433 36789999999999998864
No 348
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=28.95 E-value=28 Score=32.06 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=25.3
Q ss_pred CCCcceEEEEcCCCCCChHHHHHHHHHHHHCCC--eEEEEeCCc
Q 044012 4 ENQKLHVMFLPYIAPGHMVPMVDMARLFAANGI--QVTIILTTM 45 (490)
Q Consensus 4 ~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh--~Vt~~~~~~ 45 (490)
+.++|||+++-. |.+--. +|..|+++|| +|+++....
T Consensus 4 ~~~~mkI~IiGa---G~vG~~--~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 4 TVKPTKLAVIGA---GAVGST--LAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp ---CCEEEEECC---SHHHHH--HHHHHHHTTCCSEEEEECSSH
T ss_pred CCCCCEEEEECC---CHHHHH--HHHHHHhCCCCCEEEEEeCCh
Confidence 355689999865 444333 6778999999 999887643
No 349
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=28.88 E-value=63 Score=31.50 Aligned_cols=34 Identities=29% Similarity=0.260 Sum_probs=27.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.+.+||+|+-.+..| ..+|+.|+++||+|+..=.
T Consensus 7 ~~~k~v~viG~G~sG-----~s~A~~l~~~G~~V~~~D~ 40 (451)
T 3lk7_A 7 FENKKVLVLGLARSG-----EAAARLLAKLGAIVTVNDG 40 (451)
T ss_dssp TTTCEEEEECCTTTH-----HHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEEeeCHHH-----HHHHHHHHhCCCEEEEEeC
Confidence 456899999886654 2459999999999998754
No 350
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=28.84 E-value=89 Score=23.62 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=24.7
Q ss_pred HHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEeccc
Q 044012 109 EKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSG 147 (490)
Q Consensus 109 ~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 147 (490)
.+.+++.+||+||.|.... .+..+.+.+ ++|.|+++...
T Consensus 40 l~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 40 LAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp HHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCC
T ss_pred HHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccc
Confidence 3445566899999997544 344444332 57888776654
No 351
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=28.82 E-value=1e+02 Score=27.11 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=25.8
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.+..+.+ +++++.++ |-+ -.++|+.|+++|++|+++.-
T Consensus 1 m~~~l~~k-~vlVTGas-~gI--G~~ia~~l~~~G~~V~~~~r 39 (263)
T 3ai3_A 1 MDMGISGK-VAVITGSS-SGI--GLAIAEGFAKEGAHIVLVAR 39 (263)
T ss_dssp CCCCCTTC-EEEEESCS-SHH--HHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCCCC-EEEEECCC-chH--HHHHHHHHHHCCCEEEEEcC
Confidence 55554444 45555343 322 36899999999999988764
No 352
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=28.74 E-value=1.1e+02 Score=23.83 Aligned_cols=42 Identities=26% Similarity=0.361 Sum_probs=26.5
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 148 (490)
+..+.+++.+||+||.|.... .+..+.+.+ .+|.|+++....
T Consensus 42 ~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (153)
T 3cz5_A 42 EAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQG 90 (153)
T ss_dssp HHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCS
T ss_pred HHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 344556667899999997544 344333332 688888866543
No 353
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=28.69 E-value=39 Score=31.57 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=21.2
Q ss_pred cCCCcEEEEcCCCc-chHHHHHHhCCCeEEEe
Q 044012 114 EQNPNCIVSDNLFP-WTVSIAEELGIPRLAFT 144 (490)
Q Consensus 114 ~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~ 144 (490)
+.+||+||...... ....+.+.+|||++.+.
T Consensus 94 al~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~ 125 (346)
T 2etv_A 94 TLQPDVVFITYVDRXTAXDIQEXTGIPVVVLS 125 (346)
T ss_dssp HHCCSEEEEESCCHHHHHHHHHHHTSCEEEEC
T ss_pred cCCCCEEEEeCCccchHHHHHHhcCCcEEEEe
Confidence 45899999875432 22335577899998863
No 354
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=28.55 E-value=51 Score=30.27 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
++|+ ++ |+.|-+- .+|++.|.++||+|+.+.-
T Consensus 10 ~~vl-VT-GatGfIG--~~l~~~Ll~~G~~V~~~~r 41 (338)
T 2rh8_A 10 KTAC-VV-GGTGFVA--SLLVKLLLQKGYAVNTTVR 41 (338)
T ss_dssp CEEE-EE-CTTSHHH--HHHHHHHHHTTCEEEEEES
T ss_pred CEEE-EE-CCchHHH--HHHHHHHHHCCCEEEEEEc
Confidence 4554 44 4445443 4788999999999987653
No 355
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=28.49 E-value=30 Score=32.61 Aligned_cols=39 Identities=8% Similarity=-0.076 Sum_probs=26.4
Q ss_pred CCcceEEEEcCCCCC-C---hHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPG-H---MVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~G-H---i~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+++||+++..|..+ | +.....++++|.+.||+|+.+..
T Consensus 1 M~kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i 43 (357)
T 4fu0_A 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGI 43 (357)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCccchHHHHHHHHHHHHHHhHhCCEEEEEEE
Confidence 455799888544222 3 33456788999999999998853
No 356
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=28.44 E-value=2.1e+02 Score=25.21 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+++++.++.| --.++|+.|+++|++|.++.-
T Consensus 14 k~vlVTGas~g---IG~~ia~~l~~~G~~V~~~~r 45 (278)
T 3sx2_A 14 KVAFITGAARG---QGRAHAVRLAADGADIIAVDL 45 (278)
T ss_dssp CEEEEESTTSH---HHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCh---HHHHHHHHHHHCCCeEEEEec
Confidence 56677755432 235889999999999988764
No 357
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=28.39 E-value=69 Score=27.74 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCcceEEEEc-CCCC----CChHH-HH-HHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLP-YIAP----GHMVP-MV-DMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~-~~~~----GHi~p-~l-~LA~~L~~rGh~Vt~~~~ 43 (490)
.+||||+++. .|-. +-++- ++ .+++.|.+.||+|.++--
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL 68 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTV 68 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 5788998776 4432 22333 22 355556678999987664
No 358
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=28.37 E-value=43 Score=29.11 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=31.4
Q ss_pred cceEEEEc--CCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcc
Q 044012 7 KLHVMFLP--YIAPGHMVPMVDMARLFAAN-GIQVTIILTTMN 46 (490)
Q Consensus 7 ~~~Il~~~--~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~ 46 (490)
++|++.+. -|+-|-..-...||..|+++ |++|.++=....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 45554443 45889999999999999999 999999876543
No 359
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=28.29 E-value=47 Score=32.64 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=25.7
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~ 43 (490)
++|||.|+-.|..| ..+|..|+++ ||+|+++-.
T Consensus 4 ~~mkI~VIG~G~mG-----~~lA~~La~~g~G~~V~~~d~ 38 (467)
T 2q3e_A 4 EIKKICCIGAGYVG-----GPTCSVIAHMCPEIRVTVVDV 38 (467)
T ss_dssp CCCEEEEECCSTTH-----HHHHHHHHHHCTTSEEEEECS
T ss_pred CccEEEEECCCHHH-----HHHHHHHHhcCCCCEEEEEEC
Confidence 46899999766665 4678888888 899988753
No 360
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=28.28 E-value=63 Score=28.75 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=33.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhh
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRFQNA 53 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (490)
.||||+.-=-+. |---+.+|+++|++.| +|+++.+...++-+...
T Consensus 1 ~M~ILlTNDDGi-~apGi~aL~~~L~~~g-~V~VVAP~~~~Sg~g~a 45 (254)
T 2v4n_A 1 SMRILLSNDDGV-HAPGIQTLAKALREFA-DVQVVAPDRNRSGASNS 45 (254)
T ss_dssp CCEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTC
T ss_pred CCeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEeeCCCCcCccCC
Confidence 368888775554 3334888999998876 99999998877766654
No 361
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=28.26 E-value=40 Score=28.56 Aligned_cols=36 Identities=3% Similarity=-0.129 Sum_probs=22.6
Q ss_pred cceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 7 KLHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 7 ~~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
||||+++. .|-.+.-.-..++++.+.+.|++|+++-
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~d 37 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHE 37 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEE
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEE
Confidence 57887766 4433322345667777777788888765
No 362
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=28.25 E-value=63 Score=27.86 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+|+++++.++.| --.++|+.|+++|++|.++.-.
T Consensus 2 ~k~vlITGas~g---IG~~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVITGASRG---IGEAIARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEESCSSH---HHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCcH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 466777755432 2468899999999998887653
No 363
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=28.21 E-value=76 Score=24.86 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 148 (490)
+..+.+++.+||+||.|.... .+..+.+.+ .+|.|+++....
T Consensus 38 ~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 38 EALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp HHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 344455667899999997544 344444332 689888876554
No 364
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=28.08 E-value=46 Score=27.40 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=28.3
Q ss_pred ceEEEEcCCC--CC-ChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 8 LHVMFLPYIA--PG-HMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 8 ~~Il~~~~~~--~G-Hi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.+|+++|.=+ .. --++...|++.|.++|.+|.|..+|-
T Consensus 31 ~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPV 71 (186)
T 2bru_C 31 HSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 71 (186)
T ss_dssp SEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSS
T ss_pred CeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4677776221 11 24578899999999999999999864
No 365
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=28.00 E-value=87 Score=23.39 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-------CCCeEEEeccc
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-------GIPRLAFTGSG 147 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 147 (490)
+..+.++..+||+||.|...+ .+..+.+.+ .+|.|.++...
T Consensus 42 ~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 91 (129)
T 1p6q_A 42 QGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQG 91 (129)
T ss_dssp HHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSCC
T ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCCC
Confidence 334455667899999997554 355555443 45666665543
No 366
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=27.97 E-value=52 Score=30.22 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=23.6
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
++|+|++. |+.|-+- .+|++.|.++||+|+.+.-
T Consensus 4 ~~~~vlVT--GatG~iG--~~l~~~L~~~G~~V~~~~r 37 (341)
T 3enk_A 4 TKGTILVT--GGAGYIG--SHTAVELLAHGYDVVIADN 37 (341)
T ss_dssp SSCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEECC
T ss_pred CCcEEEEe--cCCcHHH--HHHHHHHHHCCCcEEEEec
Confidence 34566554 3444333 5789999999999998864
No 367
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=27.97 E-value=47 Score=29.65 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=25.5
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
||||++.- + |.+- ..|++.|.++||+|+.++-..
T Consensus 5 ~~~ilVtG--a-G~iG--~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFG--H-GYTA--RVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CCEEEEET--C-CHHH--HHHHHHHGGGTCEEEEEESCG
T ss_pred cCcEEEEC--C-cHHH--HHHHHHHHHCCCEEEEEEcCh
Confidence 46777764 5 6554 478899999999999988643
No 368
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.94 E-value=70 Score=24.45 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCcEEEEcCCCc--chHHHHHHhCC-------CeEEEec
Q 044012 106 PEIEKLFREQNPNCIVSDNLFP--WTVSIAEELGI-------PRLAFTG 145 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgi-------P~v~~~~ 145 (490)
.+..+.+++.+||+||.|.... .+..+.+.+.- |.|+++.
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECT
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEec
No 369
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=27.84 E-value=68 Score=28.71 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCCcEEEEcCCCc------chHHHHHHhCCCeEEEecc
Q 044012 106 PEIEKLFREQNPNCIVSDNLFP------WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~------~~~~~A~~lgiP~v~~~~~ 146 (490)
..+.+++++.+||+||+-.-.. -+..+|..||+|.+...+.
T Consensus 102 ~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 148 (264)
T 1o97_C 102 RILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVAD 148 (264)
T ss_dssp HHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEE
Confidence 3445556666899999776542 5888999999999987543
No 370
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=27.72 E-value=60 Score=28.29 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=24.7
Q ss_pred CCceeecccCChhHHHHHHHhCCcEeeccCcc
Q 044012 363 QAIGGFLTHCGWNSILEGVSAGVPMVTWPVFA 394 (490)
Q Consensus 363 ~~~~~~ItHGG~~s~~eal~~GvP~l~~P~~~ 394 (490)
+++ +|+.||.......- .++|+|-++..+
T Consensus 64 ~dV--IISRGgta~~Lr~~-~~iPVV~I~vs~ 92 (225)
T 2pju_A 64 CDA--IIAAGSNGAYLKSR-LSVPVILIKPSG 92 (225)
T ss_dssp CSE--EEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CeE--EEeCChHHHHHHhh-CCCCEEEecCCH
Confidence 666 99999999988875 689999999864
No 371
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=27.70 E-value=74 Score=24.33 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=25.8
Q ss_pred HHHHhhcCCCcEEEEcCCCc--chHHHHHHh----CCCeEEEeccc
Q 044012 108 IEKLFREQNPNCIVSDNLFP--WTVSIAEEL----GIPRLAFTGSG 147 (490)
Q Consensus 108 l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l----giP~v~~~~~~ 147 (490)
..+.++..+||+||.|...+ .+..+.+.+ .+|.|+++...
T Consensus 40 al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 40 AIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp HHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCC
Confidence 33445566899999997543 344444443 58888876654
No 372
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=27.66 E-value=39 Score=30.21 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=28.0
Q ss_pred CcceEEEEcCCCCCChHH--HHHHHHHHHHCCCeEEEEeCCcch
Q 044012 6 QKLHVMFLPYIAPGHMVP--MVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p--~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
.|.|||++. ||-.+ ...|.+.|.+.|++|+++.+....
T Consensus 3 ~m~~vLiV~----g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~ 42 (259)
T 3rht_A 3 AMTRVLYCG----DTSLETAAGYLAGLMTSWQWEFDYIPSHVGL 42 (259)
T ss_dssp ---CEEEEE----SSCTTTTHHHHHHHHHHTTCCCEEECTTSCB
T ss_pred CCceEEEEC----CCCchhHHHHHHHHHHhCCceEEEecccccc
Confidence 467999993 66443 567888999999999999987654
No 373
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=27.65 E-value=1e+02 Score=27.07 Aligned_cols=39 Identities=18% Similarity=0.049 Sum_probs=24.5
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.+..+.+ .++++.+ .|-+ -.++|+.|+++||+|+++.-
T Consensus 1 M~~~l~~k-~vlVTGa-s~gI--G~~ia~~l~~~G~~V~~~~r 39 (260)
T 1nff_A 1 MSGRLTGK-VALVSGG-ARGM--GASHVRAMVAEGAKVVFGDI 39 (260)
T ss_dssp -CCTTTTC-EEEEETT-TSHH--HHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCCCC-EEEEeCC-CCHH--HHHHHHHHHHCCCEEEEEeC
Confidence 55444444 4455533 3322 35789999999999998764
No 374
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=27.64 E-value=56 Score=31.00 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhhccCCceeecccCCh
Q 044012 295 SKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLILEHQAIGGFLTHCGW 374 (490)
Q Consensus 295 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~~ItHGG~ 374 (490)
+.+-...+.+++.....+.||.+.+. . .-.++.+++++..+-+++.. ||-....
T Consensus 94 d~~Ra~dL~~af~Dp~i~aI~~~rGG---y---------------------ga~rlLp~LD~~~i~~~PK~--fiGySDi 147 (371)
T 3tla_A 94 IKERAQEFNELVYNPDITCIMSTIGG---D---------------------NSNSLLPFLDYDAIIANPKI--IIGYSDT 147 (371)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEESCCC---S---------------------CGGGGGGGSCHHHHHHSCCE--EEECGGG
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcccc---c---------------------cHHHHHhhcChhhHHhCCcE--EEEechH
Confidence 44557778888888888999888766 1 12334455555555555555 7766666
Q ss_pred hHHHHHHH--hCCcEeeccC
Q 044012 375 NSILEGVS--AGVPMVTWPV 392 (490)
Q Consensus 375 ~s~~eal~--~GvP~l~~P~ 392 (490)
..++-|++ .|++.+-=|.
T Consensus 148 TaL~~ai~~k~Gl~T~hGP~ 167 (371)
T 3tla_A 148 TALLAGIYAKTGLITFYGPA 167 (371)
T ss_dssp HHHHHHHHHHHCBCEEECCC
T ss_pred HHHHHHHHHHcCCEEEECcc
Confidence 66666655 4666665554
No 375
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=27.59 E-value=1.3e+02 Score=19.42 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 044012 449 AVKMRKKANHLKELAKKAVEEGGS 472 (490)
Q Consensus 449 ~~~~~~~a~~l~~~~~~~~~~~g~ 472 (490)
+.+|+++...++.+++ .-||+
T Consensus 4 waefkqrlaaiktrlq---alggs 24 (73)
T 2a3d_A 4 WAEFKQRLAAIKTRLQ---ALGGS 24 (73)
T ss_dssp HHHHHHHHHHHHHHHH---HCSSG
T ss_pred HHHHHHHHHHHHHHHH---HhcCc
Confidence 4577888888888877 45555
No 376
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=27.55 E-value=1.1e+02 Score=22.69 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-------CCCeEEEeccc
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-------GIPRLAFTGSG 147 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 147 (490)
+..+.++..+||+||.|...+ .+..+.+.+ .+|.+.++...
T Consensus 40 ~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~ 89 (128)
T 1jbe_A 40 DALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEA 89 (128)
T ss_dssp HHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSC
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCc
Confidence 334455667899999997654 344444443 46777776554
No 377
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=27.34 E-value=1.1e+02 Score=26.77 Aligned_cols=39 Identities=15% Similarity=0.057 Sum_probs=25.5
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.+..+. |+++++.++ |-+ -.++|+.|+++|++|+++.-
T Consensus 1 m~~~l~~-k~vlVTGas-~gI--G~~ia~~l~~~G~~V~~~~r 39 (260)
T 2z1n_A 1 MDLGIQG-KLAVVTAGS-SGL--GFASALELARNGARLLLFSR 39 (260)
T ss_dssp CCCCCTT-CEEEEETTT-SHH--HHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCCC-CEEEEECCC-chH--HHHHHHHHHHCCCEEEEEeC
Confidence 5544433 455555443 322 36899999999999988764
No 378
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=27.27 E-value=1.3e+02 Score=28.42 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=16.1
Q ss_pred chHHHHHHhCCCeEEEeccc
Q 044012 128 WTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 128 ~~~~~A~~lgiP~v~~~~~~ 147 (490)
....+|+.+|||+++..++.
T Consensus 277 ~lAl~Ak~~~vPfyV~ap~~ 296 (374)
T 2yvk_A 277 GLAILANAFDIPFFVAAPLS 296 (374)
T ss_dssp HHHHHHHHTTCCEEEECCGG
T ss_pred HHHHHHHHcCCCEEEecccc
Confidence 35778999999999986654
No 379
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=27.22 E-value=36 Score=31.72 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=27.2
Q ss_pred CcceEEEEcCCCCC-Ch----HHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPG-HM----VPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~G-Hi----~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+++||+++..+ +| -. .....++++|.+.||+|..+..
T Consensus 2 ~~~~v~vl~gG-~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~ 43 (343)
T 1e4e_A 2 NRIKVAILFGG-CSEEHDVSVKSAIEIAANINKEKYEPLYIGI 43 (343)
T ss_dssp CCEEEEEEEEC-SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEE
T ss_pred CCcEEEEEeCC-CCCCcchhHHHHHHHHHHhhhcCCEEEEEEE
Confidence 46899888744 44 22 2466789999999999998865
No 380
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=27.15 E-value=84 Score=27.20 Aligned_cols=39 Identities=15% Similarity=0.042 Sum_probs=23.0
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+.+.++ |.++++.++ |- --.++|+.|+++|++|+++.-
T Consensus 1 M~~~~~~-k~vlVTGas-~g--IG~~ia~~l~~~G~~V~~~~r 39 (241)
T 1dhr_A 1 MAASGEA-RRVLVYGGR-GA--LGSRCVQAFRARNWWVASIDV 39 (241)
T ss_dssp -----CC-CEEEEETTT-SH--HHHHHHHHHHTTTCEEEEEES
T ss_pred CCccCCC-CEEEEECCC-cH--HHHHHHHHHHhCCCEEEEEeC
Confidence 4443333 445555443 32 346889999999999988764
No 381
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=27.15 E-value=66 Score=26.38 Aligned_cols=42 Identities=21% Similarity=0.112 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 148 (490)
+..+.+++.+||+||.|...+ .+..+++.+ .+|.|+++....
T Consensus 42 ~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~ 90 (184)
T 3rqi_A 42 EALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYAS 90 (184)
T ss_dssp HHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred HHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 344556677899999997544 344444332 588888776543
No 382
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=27.13 E-value=33 Score=29.31 Aligned_cols=33 Identities=6% Similarity=0.154 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|||++. |+.|-+- ..|+++|.++||+|+.+.-.
T Consensus 1 M~ilIt--GatG~iG--~~l~~~L~~~g~~V~~~~R~ 33 (219)
T 3dqp_A 1 MKIFIV--GSTGRVG--KSLLKSLSTTDYQIYAGARK 33 (219)
T ss_dssp CEEEEE--STTSHHH--HHHHHHHTTSSCEEEEEESS
T ss_pred CeEEEE--CCCCHHH--HHHHHHHHHCCCEEEEEECC
Confidence 466655 3444333 58899999999999998853
No 383
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=27.13 E-value=76 Score=24.78 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecccH
Q 044012 106 PEIEKLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSGF 148 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 148 (490)
.+..+.+++.+||+||.|.... .+..+.+.+ .+|.|+++....
T Consensus 51 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 100 (152)
T 3eul_A 51 AAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDE 100 (152)
T ss_dssp HHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCC
Confidence 4445556667899999997554 344444433 578777766543
No 384
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=27.07 E-value=2.3e+02 Score=22.86 Aligned_cols=95 Identities=9% Similarity=0.049 Sum_probs=60.7
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhh-hhcccccCCCceEEEEeeCCCCcCCCCCCcc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILTTMNARRFQN-AIDRDSRLGREISLRILRFPSQEAGLPEGCE 83 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (490)
..+|++.. .-.+=.-++.+|+.|.+. ||++. .+......+++ . |+....+. ..+++
T Consensus 11 ~g~V~lsv--~D~dK~~~v~~ak~~~~ll~Gf~l~--AT~gTa~~L~e~~---------Gl~v~~v~------k~~eG-- 69 (152)
T 1b93_A 11 RKHIALVA--HDHCKQMLMSWVERHQPLLEQHVLY--ATGTTGNLISRAT---------GMNVNAML------SGPMG-- 69 (152)
T ss_dssp SCEEEEEE--CGGGHHHHHHHHHHTHHHHTTSEEE--EETTHHHHHHHHH---------CCCCEEEC------CGGGT--
T ss_pred CCEEEEEE--ehhhHHHHHHHHHHHHHHhCCCEEE--EccHHHHHHHHHh---------CceeEEEE------ecCCC--
Confidence 35565554 234445689999999999 99654 44555566666 5 45444442 01111
Q ss_pred CCCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcCC--Cc-c-------hHHHHHHhCCCeEE
Q 044012 84 NLMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDNL--FP-W-------TVSIAEELGIPRLA 142 (490)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~~--~~-~-------~~~~A~~lgiP~v~ 142 (490)
-...+.+.+++.+.|+||.-.- .. . -..+|-.++||++.
T Consensus 70 --------------------G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T 118 (152)
T 1b93_A 70 --------------------GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVAT 118 (152)
T ss_dssp --------------------HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEES
T ss_pred --------------------CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEe
Confidence 1346888899999999996543 22 2 35588899999875
No 385
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp}
Probab=27.00 E-value=84 Score=26.53 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
..++++-++..|+-..+..+++.|+++|+.|..+-.
T Consensus 32 ~p~vv~~HG~~g~~~~~~~~~~~l~~~G~~v~~~d~ 67 (241)
T 3f67_A 32 LPIVIVVQEIFGVHEHIRDLCRRLAQEGYLAIAPEL 67 (241)
T ss_dssp EEEEEEECCTTCSCHHHHHHHHHHHHTTCEEEEECT
T ss_pred CCEEEEEcCcCccCHHHHHHHHHHHHCCcEEEEecc
Confidence 456777777778888899999999999998876654
No 386
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=26.99 E-value=67 Score=26.75 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=29.5
Q ss_pred CCcceEEEEcCCCCCChHHHH-HHHHHHHH-CCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMV-DMARLFAA-NGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l-~LA~~L~~-rGh~Vt~~~~~~ 45 (490)
+.||||+++-....|+..-+. .+++.|.+ .|++|.++--..
T Consensus 2 ~~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~ 44 (188)
T 2ark_A 2 NAMGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDE 44 (188)
T ss_dssp CCCEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTT
T ss_pred CCCCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhh
Confidence 357899888766677766544 46777777 899998886544
No 387
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=26.75 E-value=37 Score=29.23 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=23.2
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
++|||+|+-.|..| ..+|+.|++.||+|+++..
T Consensus 27 ~~~~I~iiG~G~~G-----~~la~~l~~~g~~V~~~~r 59 (215)
T 2vns_A 27 EAPKVGILGSGDFA-----RSLATRLVGSGFKVVVGSR 59 (215)
T ss_dssp --CCEEEECCSHHH-----HHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEEccCHHH-----HHHHHHHHHCCCEEEEEeC
Confidence 45789998544333 4678889999999988754
No 388
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=26.64 E-value=63 Score=29.63 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=23.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+|+|++. |+.|.+- .+|++.|.++||+|+.+.-.
T Consensus 3 ~~~vlVt--GatG~iG--~~l~~~L~~~G~~V~~~~r~ 36 (345)
T 2z1m_A 3 GKRALIT--GIRGQDG--AYLAKLLLEKGYEVYGADRR 36 (345)
T ss_dssp CCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEE--CCCChHH--HHHHHHHHHCCCEEEEEECC
Confidence 4566654 4445443 57899999999999988753
No 389
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=26.62 E-value=1.2e+02 Score=26.50 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHH----hCCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEE----LGIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~----lgiP~v~~~~~~~ 148 (490)
.+.++.++++||++|+-.-.. .+...|+. -|+|+|+++-.+.
T Consensus 55 ~~~~~~~~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 102 (283)
T 1qv9_A 55 MALDIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPG 102 (283)
T ss_dssp HHHHHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGG
T ss_pred HhhhhhhhcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcc
Confidence 333444788999988654333 34444443 4999999976653
No 390
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=26.58 E-value=74 Score=26.88 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=20.4
Q ss_pred HHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 27 MARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 27 LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
.|++|.+.|..||+++.......+.+
T Consensus 22 ta~eL~~~gI~vtlI~Dsa~~~~m~~ 47 (191)
T 1w2w_B 22 TAYELVYDKIPSTLITDSSIAYRIRT 47 (191)
T ss_dssp HHHHHHHHTCCBEEBCGGGHHHHHHH
T ss_pred HHHHHHHcCCCEEEEechHHHHHHHh
Confidence 59999999999999997655555444
No 391
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=26.55 E-value=1.2e+02 Score=26.08 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=25.3
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.+..+.++|+ ++ ++.|-+ -.++++.|+++|++|+++.-
T Consensus 1 M~~~l~~k~vl-IT-Gasggi--G~~~a~~l~~~G~~V~~~~r 39 (244)
T 3d3w_A 1 MELFLAGRRVL-VT-GAGKGI--GRGTVQALHATGARVVAVSR 39 (244)
T ss_dssp CCCCCTTCEEE-EE-STTSHH--HHHHHHHHHHTTCEEEEEES
T ss_pred CccccCCcEEE-EE-CCCcHH--HHHHHHHHHHCCCEEEEEeC
Confidence 55555545554 44 333322 46788999999999988764
No 392
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=26.51 E-value=61 Score=29.95 Aligned_cols=35 Identities=6% Similarity=-0.096 Sum_probs=25.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
++++|++. |+.|.+- ..|++.|.++||+|+.+.-.
T Consensus 24 ~~~~vlVt--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 58 (351)
T 3ruf_A 24 SPKTWLIT--GVAGFIG--SNLLEKLLKLNQVVIGLDNF 58 (351)
T ss_dssp SCCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEECC
T ss_pred CCCeEEEE--CCCcHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 45677665 4555553 57899999999999998753
No 393
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=26.26 E-value=39 Score=31.22 Aligned_cols=32 Identities=6% Similarity=0.080 Sum_probs=26.1
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCC-CeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANG-IQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rG-h~Vt~~~~ 43 (490)
+|||.|+-.|..| ..+|+.|++.| |+|+++-.
T Consensus 24 ~m~IgvIG~G~mG-----~~lA~~L~~~G~~~V~~~dr 56 (317)
T 4ezb_A 24 MTTIAFIGFGEAA-----QSIAGGLGGRNAARLAAYDL 56 (317)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHTTTCSEEEEECG
T ss_pred CCeEEEECccHHH-----HHHHHHHHHcCCCeEEEEeC
Confidence 4789999766555 78899999999 99998764
No 394
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=26.26 E-value=86 Score=25.94 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=32.0
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCC--CeEEEEeCCcchhhhhh
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANG--IQVTIILTTMNARRFQN 52 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rG--h~Vt~~~~~~~~~~~~~ 52 (490)
|....++.+|+++. ++.+++--+...++.|.+-| |+|.+++-....+.+.+
T Consensus 1 ~~~~~~~~~V~Iim-gS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~ 53 (174)
T 3lp6_A 1 MTPAGERPRVGVIM-GSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFS 53 (174)
T ss_dssp -----CCCSEEEEE-SCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHH
T ss_pred CCCCCCCCeEEEEE-CcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHH
Confidence 34445556777776 88888888888888888777 46666665444444433
No 395
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=26.20 E-value=43 Score=30.24 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|||.|+-.|..| ..+|+.|+++||+|+++..
T Consensus 2 ~~i~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr 32 (287)
T 3pef_A 2 QKFGFIGLGIMG-----SAMAKNLVKAGCSVTIWNR 32 (287)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CEEEEEeecHHH-----HHHHHHHHHCCCeEEEEcC
Confidence 688888655444 5678999999999997754
No 396
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=26.19 E-value=32 Score=32.47 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=26.8
Q ss_pred CcceEEEEcCCCCCCh----HHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHM----VPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi----~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
++|||+++..+..+-. .....++++|.++||+|..+..
T Consensus 2 ~~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~ 43 (364)
T 2i87_A 2 TKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYI 43 (364)
T ss_dssp -CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEE
T ss_pred CCcEEEEEECCCCccchhHHHHHHHHHHHHhhcCCEEEEEEE
Confidence 4689988885432222 2347788999999999998875
No 397
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=26.16 E-value=68 Score=28.71 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=32.1
Q ss_pred CcceEEEEc--CCCCCChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 6 QKLHVMFLP--YIAPGHMVPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 6 ~~~~Il~~~--~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
+++|+++++ .|+.|-..-...||..|+++|.+|.++=....
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 345665554 45789999999999999999999999876543
No 398
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=26.14 E-value=44 Score=29.37 Aligned_cols=34 Identities=29% Similarity=0.192 Sum_probs=25.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
..++||.|+-.|..| .+||+.|+++||+|++...
T Consensus 17 ~~~~kIgiIG~G~mG-----~alA~~L~~~G~~V~~~~r 50 (245)
T 3dtt_A 17 FQGMKIAVLGTGTVG-----RTMAGALADLGHEVTIGTR 50 (245)
T ss_dssp --CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEEES
T ss_pred cCCCeEEEECCCHHH-----HHHHHHHHHCCCEEEEEeC
Confidence 456899999655444 5679999999999998764
No 399
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=26.07 E-value=91 Score=29.31 Aligned_cols=33 Identities=12% Similarity=-0.136 Sum_probs=25.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|+||+++..+ ..-..++++|.+.|++|.++.+.
T Consensus 1 M~~Ililg~g-----~~g~~~~~a~~~~G~~v~~~~~~ 33 (380)
T 3ax6_A 1 MKKIGIIGGG-----QLGKMMTLEAKKMGFYVIVLDPT 33 (380)
T ss_dssp CCEEEEECCS-----HHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 4589888753 23567888899999999988864
No 400
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=26.06 E-value=56 Score=30.16 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=24.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+++++|++. |+.|-+ -..|++.|.++||+|+.+.-
T Consensus 25 ~~~~~vlVt--GatG~i--G~~l~~~L~~~g~~V~~~~r 59 (343)
T 2b69_A 25 KDRKRILIT--GGAGFV--GSHLTDKLMMDGHEVTVVDN 59 (343)
T ss_dssp --CCEEEEE--TTTSHH--HHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCEEEEE--cCccHH--HHHHHHHHHHCCCEEEEEeC
Confidence 456777665 444544 35788999999999998874
No 401
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.05 E-value=86 Score=23.98 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEeccc
Q 044012 110 KLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSG 147 (490)
Q Consensus 110 ~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 147 (490)
+.++..+||+||.|.... .+..+.+.+ .+|.|+++...
T Consensus 42 ~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~ 86 (137)
T 3cfy_A 42 QFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHG 86 (137)
T ss_dssp HHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecC
Confidence 344455899999997544 344444433 57777776554
No 402
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=26.02 E-value=1.1e+02 Score=26.90 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
-|+++++.++.| + -.++|+.|+++|++|.++...
T Consensus 8 ~k~vlVTGas~G-I--G~aia~~la~~G~~V~~~~~~ 41 (259)
T 3edm_A 8 NRTIVVAGAGRD-I--GRACAIRFAQEGANVVLTYNG 41 (259)
T ss_dssp TCEEEEETTTSH-H--HHHHHHHHHHTTCEEEEEECS
T ss_pred CCEEEEECCCch-H--HHHHHHHHHHCCCEEEEEcCC
Confidence 356667655443 2 368999999999999888543
No 403
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=25.98 E-value=59 Score=30.11 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=23.6
Q ss_pred HHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEecc
Q 044012 110 KLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 110 ~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~~ 146 (490)
+.|.+.+||+||..........--+..|+|++.+...
T Consensus 110 E~i~al~PDLIi~~~~~~~~~~~L~~~gipvv~~~~~ 146 (335)
T 4hn9_A 110 EACVAATPDVVFLPMKLKKTADTLESLGIKAVVVNPE 146 (335)
T ss_dssp HHHHHTCCSEEEEEGGGHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHhcCCCEEEEeCcchhHHHHHHHcCCCEEEEcCC
Confidence 3344569999998754222233345678999988543
No 404
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=25.96 E-value=61 Score=32.84 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=36.2
Q ss_pred CCCCCCcceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 1 MVSENQKLHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 1 m~~~~~~~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
|....++.+|+|++ -|+.|-..-...||..|+++|++|.++....
T Consensus 1 ~~~~~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 1 MQFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CGGGSSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCCCCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 43334566777766 4578999999999999999999999999875
No 405
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=25.93 E-value=59 Score=29.87 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=21.9
Q ss_pred hhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEe
Q 044012 112 FREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFT 144 (490)
Q Consensus 112 l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~ 144 (490)
|.+.+||+||...... ....--+..|||++.+.
T Consensus 80 i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~ 113 (326)
T 3psh_A 80 LLALKPDVVFVTNYAPSEMIKQISDVNIPVVAIS 113 (326)
T ss_dssp HHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEEC
T ss_pred HHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEe
Confidence 4456999999875432 23333456789999874
No 406
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=25.81 E-value=1.4e+02 Score=22.15 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=28.9
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccC
Q 044012 283 VLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKI 320 (490)
Q Consensus 283 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 320 (490)
.||+-|.| +++.+..+...+.+-|.+++...+..
T Consensus 3 qifvvfss----dpeilkeivreikrqgvrvvllysdq 36 (162)
T 2l82_A 3 QIFVVFSS----DPEILKEIVREIKRQGVRVVLLYSDQ 36 (162)
T ss_dssp EEEEEEES----CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred eEEEEecC----CHHHHHHHHHHHHhCCeEEEEEecCc
Confidence 47777755 78999999999999999999998766
No 407
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=25.80 E-value=61 Score=31.45 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|||.|+-.|..| ..+|..|+++||+|+++-.
T Consensus 1 mkI~VIG~G~vG-----~~~A~~la~~G~~V~~~d~ 31 (436)
T 1mv8_A 1 MRISIFGLGYVG-----AVCAGCLSARGHEVIGVDV 31 (436)
T ss_dssp CEEEEECCSTTH-----HHHHHHHHHTTCEEEEECS
T ss_pred CEEEEECCCHHH-----HHHHHHHHHCCCEEEEEEC
Confidence 588888665555 5688899999999988754
No 408
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=25.78 E-value=1.6e+02 Score=27.88 Aligned_cols=40 Identities=13% Similarity=0.011 Sum_probs=27.4
Q ss_pred HHHHHhhcCCCcEEEEcCCCc---chHHHHHHhCCCeEEEecc
Q 044012 107 EIEKLFREQNPNCIVSDNLFP---WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~---~~~~~A~~lgiP~v~~~~~ 146 (490)
+..+.+++.++|+||.=.--. .+..+|...++|+|.+-|+
T Consensus 97 ~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~~~~p~i~IPTT 139 (387)
T 3uhj_A 97 RVRKVAIEHGSDILVGVGGGKTADTAKIVAIDTGARIVIAPTI 139 (387)
T ss_dssp HHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHTTCEEEECCSS
T ss_pred HHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHhcCCCEEEecCc
Confidence 344445556899999654222 5667778889999998555
No 409
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=25.74 E-value=71 Score=29.20 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=25.4
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
.++++|++. |+.|.+- ..|++.|.++||+|+.+.-.
T Consensus 9 ~~~~~vlVT--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 44 (342)
T 1y1p_A 9 PEGSLVLVT--GANGFVA--SHVVEQLLEHGYKVRGTARS 44 (342)
T ss_dssp CTTCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEE--CCccHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 455677665 4445443 57889999999999988753
No 410
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=25.72 E-value=83 Score=27.46 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
||+++++.++ |- =-.++|+.|+++|++|+++.-
T Consensus 1 mk~vlVTGas-~g--IG~~~a~~l~~~G~~V~~~~r 33 (257)
T 1fjh_A 1 MSIIVISGCA-TG--IGAATRKVLEAAGHQIVGIDI 33 (257)
T ss_dssp CCEEEEETTT-SH--HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCC-CH--HHHHHHHHHHHCCCEEEEEeC
Confidence 3556666443 32 246789999999999988763
No 411
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=25.55 E-value=61 Score=28.47 Aligned_cols=35 Identities=9% Similarity=0.118 Sum_probs=23.4
Q ss_pred HHhhcCCCcEEEEcCCCcc--hHHHHHHhCCCeEEEe
Q 044012 110 KLFREQNPNCIVSDNLFPW--TVSIAEELGIPRLAFT 144 (490)
Q Consensus 110 ~~l~~~~pD~VI~D~~~~~--~~~~A~~lgiP~v~~~ 144 (490)
+.+.+.+||+||....... ...--+..|+|++.+.
T Consensus 53 E~i~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 53 EGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp HHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeC
Confidence 3455669999998865432 2333456789998874
No 412
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=25.54 E-value=1.3e+02 Score=26.22 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=27.5
Q ss_pred HHHHHHhhc--CCCcEEEEcCCCcc-------hHHHHHHhCCCeEEEec
Q 044012 106 PEIEKLFRE--QNPNCIVSDNLFPW-------TVSIAEELGIPRLAFTG 145 (490)
Q Consensus 106 ~~l~~~l~~--~~pD~VI~D~~~~~-------~~~~A~~lgiP~v~~~~ 145 (490)
+.+.+.+++ .+||+|++|..-.. |..+.-.+++|.|-+.=
T Consensus 91 P~~l~al~~L~~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK 139 (225)
T 2w36_A 91 PLFLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAK 139 (225)
T ss_dssp HHHHHHHTTCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEES
T ss_pred HHHHHHHHhcCCCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEe
Confidence 445555555 47999999986653 44466667999998743
No 413
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=25.53 E-value=95 Score=24.15 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=23.0
Q ss_pred CcceEEEEcCCCCCChH--------HHHHHHHHHHHCCCeEE
Q 044012 6 QKLHVMFLPYIAPGHMV--------PMVDMARLFAANGIQVT 39 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~--------p~l~LA~~L~~rGh~Vt 39 (490)
.+||.++++.|-.|... -+.+.|..|.++||-+.
T Consensus 6 ~~M~~IYIagPysg~~~n~~~~n~~~~~r~A~~l~~~G~ip~ 47 (125)
T 1t1j_A 6 GHMRKIFLACPYSHADAEVVEQRFRACNEVAATIVRAGHVVF 47 (125)
T ss_dssp -CCCEEEEECCCCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhhhheeEECCCCCCcchHHHHHHHHHHHHHHHHHHCCCeee
Confidence 45778888888777632 24456667889999554
No 414
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=25.49 E-value=22 Score=32.57 Aligned_cols=36 Identities=14% Similarity=-0.019 Sum_probs=27.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+++.+|+++-.+.-| +..|..|+++|++|+++-...
T Consensus 5 ~~~~~vvIIG~G~aG-----l~aA~~l~~~g~~v~lie~~~ 40 (332)
T 3lzw_A 5 TKVYDITIIGGGPVG-----LFTAFYGGMRQASVKIIESLP 40 (332)
T ss_dssp EEEEEEEEECCSHHH-----HHHHHHHHHTTCCEEEECSSS
T ss_pred CccceEEEECCCHHH-----HHHHHHHHHCCCCEEEEEcCC
Confidence 345788888766434 678888999999999997643
No 415
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=25.48 E-value=3.5e+02 Score=23.81 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+++++.++.| =-.++|+.|+++|++|.++.-
T Consensus 34 k~~lVTGas~G---IG~aia~~la~~G~~V~~~~r 65 (275)
T 4imr_A 34 RTALVTGSSRG---IGAAIAEGLAGAGAHVILHGV 65 (275)
T ss_dssp CEEEETTCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCCH---HHHHHHHHHHHCCCEEEEEcC
Confidence 67778755542 236889999999999988764
No 416
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=25.45 E-value=50 Score=30.00 Aligned_cols=47 Identities=6% Similarity=0.028 Sum_probs=32.7
Q ss_pred CcceEEEEcCCCCC----ChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 044012 6 QKLHVMFLPYIAPG----HMVPMVDMARLFAANGIQVTIILTTMNARRFQN 52 (490)
Q Consensus 6 ~~~~Il~~~~~~~G----Hi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (490)
.+|||+++..+..+ -+.....++++|.++||+|..+........+.+
T Consensus 2 ~~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~ 52 (307)
T 3r5x_A 2 NAMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEK 52 (307)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGGHHHH
T ss_pred CCcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchhHHHh
Confidence 36899998854221 134467889999999999999987655444443
No 417
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=25.43 E-value=60 Score=28.27 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=27.6
Q ss_pred HHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEEec
Q 044012 108 IEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 108 l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~~~ 145 (490)
..+.+++.++|+||.|. .+..+|+.+|+|.+.+.+
T Consensus 146 ~i~~l~~~G~~vVVG~~---~~~~~A~~~Gl~~vlI~s 180 (225)
T 2pju_A 146 QINELKANGTEAVVGAG---LITDLAEEAGMTGIFIYS 180 (225)
T ss_dssp HHHHHHHTTCCEEEESH---HHHHHHHHTTSEEEESSC
T ss_pred HHHHHHHCCCCEEECCH---HHHHHHHHcCCcEEEECC
Confidence 33444557999999983 468899999999999874
No 418
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=25.35 E-value=4e+02 Score=24.44 Aligned_cols=117 Identities=11% Similarity=-0.018 Sum_probs=62.8
Q ss_pred cceEEEEcCCCC-CChHH-HHHHHHHHHHCCCeEEEEeCCcchhhhhhhhcccccCCCceEEEEeeCCCCcCCCCCCccC
Q 044012 7 KLHVMFLPYIAP-GHMVP-MVDMARLFAANGIQVTIILTTMNARRFQNAIDRDSRLGREISLRILRFPSQEAGLPEGCEN 84 (490)
Q Consensus 7 ~~~Il~~~~~~~-GHi~p-~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (490)
|+||++++.++. .=+|. ..++.+.+...|++|.-+- .-+...+... +..+.......-...+. +
T Consensus 1 ~k~i~IltsGGdapGmNaair~vv~~a~~~g~~v~Gi~-~G~~GL~~~~------------~~~l~~~~v~~i~~~GG-t 66 (319)
T 1zxx_A 1 MKRIGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIR-YGFAGLVAGD------------IFPLESEDVAHLINVSG-T 66 (319)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHHTTTCEEEEEC-THHHHHHHTC------------EEECCGGGGTTCTTCCS-C
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHHHCCCEEEEEc-cChHHHcCCC------------EEECCHHHHHhHHhCCC-c
Confidence 469999998866 33444 5688888888899776554 4555555543 34443111111112222 1
Q ss_pred CCCCCChhhHhhHHHHHHhhHHHHHHHhhcCCCcEEEEcC--CCc-chHHHHHHhCCCeEEE
Q 044012 85 LMSTSTPETTKKLFPALELLRPEIEKLFREQNPNCIVSDN--LFP-WTVSIAEELGIPRLAF 143 (490)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~D~--~~~-~~~~~A~~lgiP~v~~ 143 (490)
.-.......+. .+...+...+.+++.+.|.+|+=. -++ .+..+++ .++|+|-+
T Consensus 67 ~LGssR~~~~~-----~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~-~~i~vvgi 122 (319)
T 1zxx_A 67 FLYSARYPEFA-----EEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTR-HGFNSIGL 122 (319)
T ss_dssp TTCCCCCGGGT-----SHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHH-TTCCEEEE
T ss_pred ccccCCCCccC-----CHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHH-hCCCEEEE
Confidence 11111111111 112345666777788999877422 222 4555554 48998875
No 419
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=25.32 E-value=72 Score=27.93 Aligned_cols=35 Identities=6% Similarity=-0.015 Sum_probs=24.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.|.|.++++.++.| --.+||+.|+++|++|.++.-
T Consensus 20 ~m~k~vlITGas~g---IG~~la~~l~~~G~~V~~~~r 54 (251)
T 3orf_A 20 HMSKNILVLGGSGA---LGAEVVKFFKSKSWNTISIDF 54 (251)
T ss_dssp --CCEEEEETTTSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred ccCCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 45677777755432 236899999999999988774
No 420
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=25.30 E-value=72 Score=29.45 Aligned_cols=37 Identities=16% Similarity=-0.016 Sum_probs=24.9
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
|++++|++. |+.|.+- ..|+++|.++||+|+.++-..
T Consensus 8 M~~~~IlVt--GatG~iG--~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 8 SPKGRVLIA--GATGFIG--QFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp ---CCEEEE--CTTSHHH--HHHHHHHHHTTCCEEEEECSS
T ss_pred CCCCeEEEE--CCCcHHH--HHHHHHHHHCCCCEEEEECCC
Confidence 344677665 4445443 578899999999999988644
No 421
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=25.28 E-value=2.7e+02 Score=24.11 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=22.2
Q ss_pred HHhhcCCCcEEEEcCCCcchHH-HHHHhCCCeEEEe
Q 044012 110 KLFREQNPNCIVSDNLFPWTVS-IAEELGIPRLAFT 144 (490)
Q Consensus 110 ~~l~~~~pD~VI~D~~~~~~~~-~A~~lgiP~v~~~ 144 (490)
+.+.+.++|.||.......... .+...|+|+|.+.
T Consensus 58 ~~l~~~~~dgiIi~~~~~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 58 ATFVSHNCTGMISTAFNENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHTTCSEEEECGGGHHHHHHHHHHC-CCEEEGG
T ss_pred HHHHhCCCCEEEEecCChHHHHHHHHcCCCCEEEEe
Confidence 3344568999998763333444 5667799998863
No 422
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=25.24 E-value=3.3e+02 Score=23.43 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=22.8
Q ss_pred HHHhhcCCCcEEEEcCCCc----chHHHHHHhCCCeEEEe
Q 044012 109 EKLFREQNPNCIVSDNLFP----WTVSIAEELGIPRLAFT 144 (490)
Q Consensus 109 ~~~l~~~~pD~VI~D~~~~----~~~~~A~~lgiP~v~~~ 144 (490)
..+++..++|.||...... .....+...|+|+|.+.
T Consensus 52 ~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~ 91 (276)
T 3ksm_A 52 SYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVD 91 (276)
T ss_dssp HHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEES
T ss_pred HHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEe
Confidence 3334433399999876432 23445667799999874
No 423
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=25.14 E-value=29 Score=34.24 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=23.8
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+||+++-.|--| |.-|..|+++|++|+++=-
T Consensus 1 Mk~VvVIGaG~~G-----L~aA~~La~~G~~V~VlEa 32 (501)
T 4dgk_A 1 MKPTTVIGAGFGG-----LALAIRLQAAGIPVLLLEQ 32 (501)
T ss_dssp CCCEEEECCHHHH-----HHHHHHHHHTTCCEEEECC
T ss_pred CCCEEEECCcHHH-----HHHHHHHHHCCCcEEEEcc
Confidence 5688888644322 6678889999999998753
No 424
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=25.12 E-value=65 Score=29.71 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=24.2
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCC--eEEEEeCC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGI--QVTIILTT 44 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh--~Vt~~~~~ 44 (490)
|.|.++++||.++- + |++--. +|-.|+..|+ +|+++=..
T Consensus 1 ~~m~~~~~KI~IiG--a-G~vG~~--~a~~l~~~~~~~ev~L~Di~ 41 (318)
T 1y6j_A 1 MEMVKSRSKVAIIG--A-GFVGAS--AAFTMALRQTANELVLIDVF 41 (318)
T ss_dssp ------CCCEEEEC--C-SHHHHH--HHHHHHHTTCSSEEEEECCC
T ss_pred CCCCCCCCEEEEEC--C-CHHHHH--HHHHHHhCCCCCEEEEEeCC
Confidence 56655678999984 3 776655 5555888887 88888654
No 425
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=25.09 E-value=35 Score=31.48 Aligned_cols=31 Identities=29% Similarity=0.204 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|||+|+-.|..| ..+|..|+++||+|+++..
T Consensus 1 m~I~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILGAGAMG-----SALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp CEEEEESCCHHH-----HHHHHHHHHHCCEEEEECC
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCeEEEEEc
Confidence 588888665544 4578899999999999875
No 426
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=25.08 E-value=82 Score=28.00 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCCcEEEEcCCCc------chHHHHHHhCCCeEEEecc
Q 044012 106 PEIEKLFREQNPNCIVSDNLFP------WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 106 ~~l~~~l~~~~pD~VI~D~~~~------~~~~~A~~lgiP~v~~~~~ 146 (490)
..+.+++++.+||+|++-.-.. -+..+|..||+|.+...+.
T Consensus 106 ~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~ 152 (255)
T 1efv_B 106 RVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQ 152 (255)
T ss_dssp HHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEE
Confidence 3444455556899999776442 5888999999999986543
No 427
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=25.03 E-value=1.2e+02 Score=25.02 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=31.4
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+..|.|....+.|-..-+..|++.|.++|+.|..+....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 334566666688998889999999999999999888643
No 428
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=25.03 E-value=96 Score=22.37 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=23.1
Q ss_pred HHHhhcCCCcEEEEcCCCc--chHHHHHH-------hCCCeEEEecc
Q 044012 109 EKLFREQNPNCIVSDNLFP--WTVSIAEE-------LGIPRLAFTGS 146 (490)
Q Consensus 109 ~~~l~~~~pD~VI~D~~~~--~~~~~A~~-------lgiP~v~~~~~ 146 (490)
.+.+++.+||+||.|.... .+..+.+. -++|.|.++..
T Consensus 38 ~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 38 LDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 3444555899999997543 23333332 35788877654
No 429
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=24.99 E-value=47 Score=28.23 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|||+++- +.|.+- ..+++.|.++||+|+++..
T Consensus 1 m~i~iiG--a~G~~G--~~ia~~l~~~g~~V~~~~r 32 (212)
T 1jay_A 1 MRVALLG--GTGNLG--KGLALRLATLGHEIVVGSR 32 (212)
T ss_dssp CEEEEET--TTSHHH--HHHHHHHHTTTCEEEEEES
T ss_pred CeEEEEc--CCCHHH--HHHHHHHHHCCCEEEEEeC
Confidence 5788774 234333 4678999999999998764
No 430
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=24.93 E-value=1.3e+02 Score=26.21 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=25.4
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|...++.++ ++++.++ |-+ -.++++.|+++|++|+++.-
T Consensus 1 m~~~~~~k~-vlITGas-ggi--G~~la~~l~~~G~~V~~~~r 39 (264)
T 2pd6_A 1 MQNRLRSAL-ALVTGAG-SGI--GRAVSVRLAGEGATVAACDL 39 (264)
T ss_dssp CCCCCTTCE-EEEETTT-SHH--HHHHHHHHHHTTCEEEEEES
T ss_pred CccccCCCE-EEEECCC-ChH--HHHHHHHHHHCCCEEEEEeC
Confidence 555554444 4555333 322 36789999999999998864
No 431
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=24.91 E-value=59 Score=32.31 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=25.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
++|||++.- +.|-+- ..|++.|.++||+|+.++-.
T Consensus 146 k~m~VLVTG--atG~IG--~~l~~~L~~~G~~V~~l~R~ 180 (516)
T 3oh8_A 146 SPLTVAITG--SRGLVG--RALTAQLQTGGHEVIQLVRK 180 (516)
T ss_dssp CCCEEEEES--TTSHHH--HHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEEC--CCCHHH--HHHHHHHHHCCCEEEEEECC
Confidence 378887764 444443 47899999999999998853
No 432
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=24.85 E-value=19 Score=32.81 Aligned_cols=32 Identities=22% Similarity=0.100 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|||+|+-.|+.|- .+|..|++.||+|+++...
T Consensus 3 mkI~iiGaGa~G~-----~~a~~L~~~g~~V~~~~r~ 34 (294)
T 3g17_A 3 LSVAIIGPGAVGT-----TIAYELQQSLPHTTLIGRH 34 (294)
T ss_dssp CCEEEECCSHHHH-----HHHHHHHHHCTTCEEEESS
T ss_pred cEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEec
Confidence 6999998777664 6788899999999999864
No 433
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=24.85 E-value=1.4e+02 Score=27.80 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=15.9
Q ss_pred chHHHHHHhCCCeEEEeccc
Q 044012 128 WTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 128 ~~~~~A~~lgiP~v~~~~~~ 147 (490)
....+|+.+|||+++..++.
T Consensus 252 ~lAl~Ak~~~vPfyV~ap~~ 271 (347)
T 1t9k_A 252 SLAVLAKRNNIPFYVAAPVS 271 (347)
T ss_dssp HHHHHHHHTTCCEEEECCGG
T ss_pred HHHHHHHHcCCCEEEecccc
Confidence 35778999999999986653
No 434
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=24.82 E-value=1.6e+02 Score=24.59 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=30.3
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
.+++||+|+-+++..- .-+....+.|.+.|++|++++...
T Consensus 21 ~~~~kV~ill~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~ 60 (193)
T 1oi4_A 21 GLSKKIAVLITDEFED-SEFTSPADEFRKAGHEVITIEKQA 60 (193)
T ss_dssp TCCCEEEEECCTTBCT-HHHHHHHHHHHHTTCEEEEEESST
T ss_pred ccCCEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEEEECCC
Confidence 3467899998876543 345667788888999999999754
No 435
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=24.82 E-value=1.5e+02 Score=23.82 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=29.6
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+.|||+|+-.++... .-+....+.|.+.|++|+++++..
T Consensus 1 ~~~ki~il~~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~ 39 (168)
T 3l18_A 1 ASMKVLFLSADGFED-LELIYPLHRIKEEGHEVYVASFQR 39 (168)
T ss_dssp CCCEEEEECCTTBCH-HHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCcEEEEEeCCCccH-HHHHHHHHHHHHCCCEEEEEECCC
Confidence 468999998876543 445566788888999999999743
No 436
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=24.82 E-value=62 Score=31.91 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=26.0
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC--CCeEEEEeC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN--GIQVTIILT 43 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r--Gh~Vt~~~~ 43 (490)
+++|||.|+-.|..| +.+|..|+++ ||+|+++-.
T Consensus 7 ~~~mkI~VIG~G~vG-----~~~A~~La~~g~g~~V~~~D~ 42 (481)
T 2o3j_A 7 GKVSKVVCVGAGYVG-----GPTCAMIAHKCPHITVTVVDM 42 (481)
T ss_dssp CCCCEEEEECCSTTH-----HHHHHHHHHHCTTSEEEEECS
T ss_pred CCCCEEEEECCCHHH-----HHHHHHHHhcCCCCEEEEEEC
Confidence 456899999776666 4668888888 799998753
No 437
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=24.79 E-value=3.7e+02 Score=23.83 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=21.9
Q ss_pred hhcCCCcEEEEcCCCcc----hHHHHHHhCCCeEEEec
Q 044012 112 FREQNPNCIVSDNLFPW----TVSIAEELGIPRLAFTG 145 (490)
Q Consensus 112 l~~~~pD~VI~D~~~~~----~~~~A~~lgiP~v~~~~ 145 (490)
+.+.++|.||....... ....+...|||+|.+..
T Consensus 54 l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 54 MINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESS
T ss_pred HHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECC
Confidence 33458899887765442 34445567999988743
No 438
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=24.78 E-value=57 Score=28.07 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
||+++++.++.| --.++|+.|+++|++|.++.-
T Consensus 1 Mk~vlVTGas~g---IG~~~a~~l~~~G~~V~~~~r 33 (230)
T 3guy_A 1 MSLIVITGASSG---LGAELAKLYDAEGKATYLTGR 33 (230)
T ss_dssp --CEEEESTTSH---HHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEecCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 466667655432 236889999999999988764
No 439
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=24.63 E-value=66 Score=29.11 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=23.8
Q ss_pred cceEEEEcCCCCCChHH-HHHHHHHHHHCCCeEEEEe
Q 044012 7 KLHVMFLPYIAPGHMVP-MVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p-~l~LA~~L~~rGh~Vt~~~ 42 (490)
|+||+++..|..++... ...+.+.|.++|++|.+..
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~ 41 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQ 41 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHHTTCEEEEEH
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 57899999887665544 6678899999999987754
No 440
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=24.62 E-value=95 Score=24.45 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=26.7
Q ss_pred cceEEEEcCCCCCChHHH-HHHHHHHHHCCCeEEEEe
Q 044012 7 KLHVMFLPYIAPGHMVPM-VDMARLFAANGIQVTIIL 42 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~-l~LA~~L~~rGh~Vt~~~ 42 (490)
|+||+++=....|+..-+ ..|++.|.++|++|..+-
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 356766665666888764 577888989999998763
No 441
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=24.62 E-value=67 Score=24.63 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=22.4
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHH-------hCCCeEEEecc
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEE-------LGIPRLAFTGS 146 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~-------lgiP~v~~~~~ 146 (490)
+..+.+++.+||+||.|.... .+..+.+. -++|.|+++..
T Consensus 37 ~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 37 EALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecC
Confidence 334445556899999997544 22222222 46787777554
No 442
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=24.56 E-value=32 Score=34.18 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=27.1
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|.+.++..+|+|+-.+.-| +.+|..|+++|++|+++-..
T Consensus 1 M~~~~~~~dVvIVGgG~aG-----l~aA~~La~~G~~V~liE~~ 39 (512)
T 3e1t_A 1 MSTRPEVFDLIVIGGGPGG-----STLASFVAMRGHRVLLLERE 39 (512)
T ss_dssp ----CEEEEEEEECCSHHH-----HHHHHHHHTTTCCEEEECSS
T ss_pred CCCCCccCCEEEECcCHHH-----HHHHHHHHhCCCCEEEEccC
Confidence 5555556789998766544 67788888999999999654
No 443
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=24.54 E-value=54 Score=28.35 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCC-CeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANG-IQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rG-h~Vt~~~~ 43 (490)
|+.++++ |+.|-+ -.+|++.|+++| |+|+.+.-
T Consensus 23 mk~vlVt-GatG~i--G~~l~~~L~~~G~~~V~~~~R 56 (236)
T 3qvo_A 23 MKNVLIL-GAGGQI--ARHVINQLADKQTIKQTLFAR 56 (236)
T ss_dssp CEEEEEE-TTTSHH--HHHHHHHHTTCTTEEEEEEES
T ss_pred ccEEEEE-eCCcHH--HHHHHHHHHhCCCceEEEEEc
Confidence 4444554 334433 357899999999 89998874
No 444
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=24.46 E-value=63 Score=27.43 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|||++. |+.|.+- ..|+++|.++||+|+.+.-.
T Consensus 1 MkilVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 1 MKIAVL--GATGRAG--SAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEE--cCCCHHH--HHHHHHHHHCCCEEEEEEec
Confidence 465554 4445443 68899999999999998753
No 445
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=24.43 E-value=99 Score=23.48 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=25.6
Q ss_pred HHHHHHhhc-CCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEe
Q 044012 106 PEIEKLFRE-QNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFT 144 (490)
Q Consensus 106 ~~l~~~l~~-~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~ 144 (490)
.+..+.+++ .+||+||.|.... .+..+.+.+ .+|.|+++
T Consensus 49 ~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 49 SAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 344455666 7899999997554 355555554 47777765
No 446
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=24.33 E-value=1.3e+02 Score=25.66 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=27.4
Q ss_pred ceEEEEcCC---------CCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYI---------APGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~---------~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+||+|+-.. ..-...=+....+.|.+.|++|+++++.
T Consensus 6 ~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~ 51 (224)
T 1u9c_A 6 KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQ 51 (224)
T ss_dssp CEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCC
Confidence 588888762 2333455677788888999999999974
No 447
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=24.33 E-value=2e+02 Score=26.83 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=33.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNA 47 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (490)
.-+++..-|+.|-..-.+.++..++.+|..|.|+..+...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~ 103 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 103 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 3466677789999999999999999999999999986543
No 448
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=24.29 E-value=3.5e+02 Score=23.78 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=23.1
Q ss_pred HHHHhhcCCCcEEEEcCCCc--chHHHHHHhCCCeEEEe
Q 044012 108 IEKLFREQNPNCIVSDNLFP--WTVSIAEELGIPRLAFT 144 (490)
Q Consensus 108 l~~~l~~~~pD~VI~D~~~~--~~~~~A~~lgiP~v~~~ 144 (490)
+.+.+.+.++|.||.-.... .....+...|+|+|.+.
T Consensus 60 ~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 60 VYKMIKQRMVDAFILLYSKENDPIKQMLIDESMPFIVIG 98 (295)
T ss_dssp HHHHHHTTCCSEEEESCCCTTCHHHHHHHHTTCCEEEES
T ss_pred HHHHHHhCCcCEEEEcCcccChHHHHHHHhCCCCEEEEC
Confidence 34445566889888764332 23344566799998873
No 449
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=24.27 E-value=73 Score=29.76 Aligned_cols=34 Identities=12% Similarity=-0.206 Sum_probs=25.7
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
|+||+++..+ .....+++++.++||+|.++.+..
T Consensus 1 M~~Ililg~g-----~~~~~~~~a~~~~G~~v~~~~~~~ 34 (365)
T 2z04_A 1 MLTVGILGGG-----QLGWMTILEGRKLGFKFHVLEDKE 34 (365)
T ss_dssp -CEEEEECCS-----HHHHHHHHHHGGGTCEEEEECSSS
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4688888643 446788999999999999887643
No 450
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=24.23 E-value=68 Score=29.37 Aligned_cols=37 Identities=8% Similarity=0.185 Sum_probs=28.9
Q ss_pred cceEEEEcCCCCCChHH-HHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVP-MVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p-~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+||+++..+..++... ...+.+.|.++|++|.+..+
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~ 41 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSA 41 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecc
Confidence 56899999998877544 67888999999999887654
No 451
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=24.18 E-value=1.1e+02 Score=27.03 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+++++.++.| --.++|+.|+++|++|.++..
T Consensus 12 k~vlVTGas~G---IG~aia~~la~~G~~V~~~~r 43 (262)
T 3ksu_A 12 KVIVIAGGIKN---LGALTAKTFALESVNLVLHYH 43 (262)
T ss_dssp CEEEEETCSSH---HHHHHHHHHTTSSCEEEEEES
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEec
Confidence 67777766554 246889999999999998763
No 452
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=24.17 E-value=17 Score=35.71 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=26.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
.|||+++..|-.| ..||+.|.+.||+|+++=..
T Consensus 3 ~M~iiI~G~G~vG-----~~la~~L~~~~~~v~vId~d 35 (461)
T 4g65_A 3 AMKIIILGAGQVG-----GTLAENLVGENNDITIVDKD 35 (461)
T ss_dssp CEEEEEECCSHHH-----HHHHHHTCSTTEEEEEEESC
T ss_pred cCEEEEECCCHHH-----HHHHHHHHHCCCCEEEEECC
Confidence 5899998877555 46899999999999998653
No 453
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=24.08 E-value=3e+02 Score=22.58 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=73.9
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccchhHhhh
Q 044012 281 NSVLYICFGSLTRFSKEQTSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAPQVLIL 360 (490)
Q Consensus 281 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p~~~ll 360 (490)
++.|-|-+||.+ +-+..++....++.++..+=+.+.+. .. .|+.+.+. +-... -
T Consensus 6 ~~~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~Sa---HR-------~p~~~~~~-------------~~~a~-~ 59 (169)
T 3trh_A 6 KIFVAILMGSDS--DLSTMETAFTELKSLGIPFEAHILSA---HR-------TPKETVEF-------------VENAD-N 59 (169)
T ss_dssp CCEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT---TT-------SHHHHHHH-------------HHHHH-H
T ss_pred CCcEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEcc---cC-------CHHHHHHH-------------HHHHH-h
Confidence 345777778754 55667788888888888765554433 11 33322111 11000 0
Q ss_pred ccCCceeecccCChh----HHHHHHHhCCcEeeccCcc-cccchH--HHHHHh--hccce--e-eccccccccccCCCCc
Q 044012 361 EHQAIGGFLTHCGWN----SILEGVSAGVPMVTWPVFA-EQFNNE--KLVTQV--LKFGL--P-VGNEIWKIWATQDSPV 428 (490)
Q Consensus 361 ~~~~~~~~ItHGG~~----s~~eal~~GvP~l~~P~~~-DQ~~na--~rv~e~--~G~G~--~-l~~~~~~~~~~~~~~~ 428 (490)
..+++ ||.=+|.. ++..+ ..-+|+|.+|... +-.... .-.+ + .|+.+ + ++.. +.
T Consensus 60 ~g~~V--iIa~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~dsLlS~v-qmp~GvPVatV~I~~a----------~~ 125 (169)
T 3trh_A 60 RGCAV--FIAAAGLAAHLAGTIAA-HTLKPVIGVPMAGGSLGGLDALLSTV-QMPGGVPVACTAIGKA----------GA 125 (169)
T ss_dssp TTEEE--EEEEECSSCCHHHHHHH-TCSSCEEEEECCCSTTTTHHHHHHHH-CCCTTSCCEECCSTHH----------HH
T ss_pred CCCcE--EEEECChhhhhHHHHHh-cCCCCEEEeecCCCCCCCHHHHHHhh-cCCCCCceEEEecCCc----------cc
Confidence 12233 66655533 33333 3468999999863 211222 2222 2 34321 1 1210 13
Q ss_pred cchhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Q 044012 429 INRGNIKNAICVVMDNDDQEAVKMRKKANHLKELAKKAV 467 (490)
Q Consensus 429 ~t~~~l~~~i~~~l~n~~~~~~~~~~~a~~l~~~~~~~~ 467 (490)
.++.-++..|-.+- | +.++++.+..+++.++.+
T Consensus 126 ~nAa~lAa~Il~~~--d----~~l~~kl~~~r~~~~~~v 158 (169)
T 3trh_A 126 KNAAILAAQIIALQ--D----KSIAQKLVQQRTAKRETL 158 (169)
T ss_dssp HHHHHHHHHHHHTT--C----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCC--C----HHHHHHHHHHHHHHHHHH
Confidence 46666666665543 3 588888888888887543
No 454
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=24.03 E-value=80 Score=24.37 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHH-------hCCCeEEEecccH
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEE-------LGIPRLAFTGSGF 148 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~-------lgiP~v~~~~~~~ 148 (490)
+..+.+++.+||+||.|.... .+..+.+. .++|+|+++....
T Consensus 43 ~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 43 EAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp HHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCC
T ss_pred HHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCC
Confidence 334445556899999997544 34433332 3578888866543
No 455
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=23.98 E-value=1.8e+02 Score=22.94 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=28.2
Q ss_pred cceEEEEc-CCCCCChHH--HHHHHHHHHHCCCeE-EEEeCCcc
Q 044012 7 KLHVMFLP-YIAPGHMVP--MVDMARLFAANGIQV-TIILTTMN 46 (490)
Q Consensus 7 ~~~Il~~~-~~~~GHi~p--~l~LA~~L~~rGh~V-t~~~~~~~ 46 (490)
.||++|+- .+-+|+-.. .+.+|+++.+.||+| .+....+.
T Consensus 12 ~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~DG 55 (140)
T 2d1p_A 12 SMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREG 55 (140)
T ss_dssp CCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred ceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEechH
Confidence 46775544 556666555 567799999999999 77776443
No 456
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=23.85 E-value=76 Score=28.47 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
-|+++++.++.| --.++|+.|+++|++|.++.-
T Consensus 8 gk~vlVTGas~G---IG~aia~~la~~G~~V~~~~r 40 (280)
T 3tox_A 8 GKIAIVTGASSG---IGRAAALLFAREGAKVVVTAR 40 (280)
T ss_dssp TCEEEESSTTSH---HHHHHHHHHHHTTCEEEECCS
T ss_pred CCEEEEECCCcH---HHHHHHHHHHHCCCEEEEEEC
Confidence 467777755543 236789999999999877653
No 457
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=23.79 E-value=1.2e+02 Score=24.69 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=23.6
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHH-CC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAA-NG 35 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~-rG 35 (490)
|+-+++++||||++.+=..---..-+|++.+.. +|
T Consensus 1 ~~~~~~~~~VLFVCtgN~cRSpmAEal~~~~~~~~g 36 (161)
T 1d1q_A 1 MTIEKPKISVAFIALGNFCRSPMAEAIFKHEVEKAN 36 (161)
T ss_dssp --CCSCCEEEEEEESSSSSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHHcC
Confidence 666677889999998765555555667777764 45
No 458
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=23.67 E-value=1.2e+02 Score=25.57 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=25.6
Q ss_pred HHhhcCCCcEEEEcCCCc--chHHHHHHh-----CCCeEEEecccH
Q 044012 110 KLFREQNPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSGF 148 (490)
Q Consensus 110 ~~l~~~~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 148 (490)
+.+++.+||+||.|...+ .+..+.+.+ .+|.|+++....
T Consensus 40 ~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~ 85 (225)
T 1kgs_A 40 YMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSD 85 (225)
T ss_dssp HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCH
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 445566899999997654 344444333 688888876653
No 459
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=23.66 E-value=65 Score=28.34 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=22.2
Q ss_pred hhcCCCcEEEEcCCCc-chHHHHHHhCCCeEEEec
Q 044012 112 FREQNPNCIVSDNLFP-WTVSIAEELGIPRLAFTG 145 (490)
Q Consensus 112 l~~~~pD~VI~D~~~~-~~~~~A~~lgiP~v~~~~ 145 (490)
+.+.+||+||...... .....-+.+|||++.+..
T Consensus 56 i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~ 90 (260)
T 2q8p_A 56 VKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDF 90 (260)
T ss_dssp HHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEECC
T ss_pred HHhcCCCEEEecCccCHHHHHHHHHcCCcEEEecC
Confidence 4456999999864322 223345667999988754
No 460
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=23.60 E-value=74 Score=29.66 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=24.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCc
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTM 45 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~ 45 (490)
+++|++. |+.|.+- ..|++.|.++||+|+.++-..
T Consensus 5 ~~~ilVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~~ 39 (352)
T 1xgk_A 5 KKTIAVV--GATGRQG--ASLIRVAAAVGHHVRAQVHSL 39 (352)
T ss_dssp CCCEEEE--STTSHHH--HHHHHHHHHTTCCEEEEESCS
T ss_pred CCEEEEE--CCCCHHH--HHHHHHHHhCCCEEEEEECCC
Confidence 4566655 4555443 467899999999999987543
No 461
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=23.57 E-value=1.4e+02 Score=28.00 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=22.8
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCCcc
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTTMN 46 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~~~ 46 (490)
|.+.++++||+++..+..|.. ..+..|.+. |.+|+-++..+.
T Consensus 1 M~~~~~~~rvgiiG~G~~g~~----~~~~~l~~~~~~~l~av~d~~~ 43 (364)
T 3e82_A 1 MSLSNNTINIALIGYGFVGKT----FHAPLIRSVPGLNLAFVASRDE 43 (364)
T ss_dssp ------CEEEEEECCSHHHHH----THHHHHHTSTTEEEEEEECSCH
T ss_pred CCCCCCcceEEEECCCHHHHH----HHHHHHhhCCCeEEEEEEcCCH
Confidence 777778899999988654431 123344444 788887776543
No 462
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=23.55 E-value=1.3e+02 Score=27.43 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=28.7
Q ss_pred CCcceEEEEcCC--CCCCh-HHHHHHHHHHHHCCCeEEEEeCCcc
Q 044012 5 NQKLHVMFLPYI--APGHM-VPMVDMARLFAANGIQVTIILTTMN 46 (490)
Q Consensus 5 ~~~~~Il~~~~~--~~GHi-~p~l~LA~~L~~rGh~Vt~~~~~~~ 46 (490)
.+|+|++|+-.| +.|.. .-...+.+.|.++|+++++..+...
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~ 50 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQ 50 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCST
T ss_pred CCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCc
Confidence 446677777666 44443 2345778888899999998876543
No 463
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=23.54 E-value=63 Score=27.56 Aligned_cols=37 Identities=5% Similarity=-0.005 Sum_probs=22.9
Q ss_pred cceEEEEcCCCCC---ChHHHH-HHHHHHHHC--CCeEEEEeC
Q 044012 7 KLHVMFLPYIAPG---HMVPMV-DMARLFAAN--GIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~G---Hi~p~l-~LA~~L~~r--Gh~Vt~~~~ 43 (490)
||||+++...-++ +..-+. .+++.|.++ ||+|+++--
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 5788877755444 333322 456666666 899887753
No 464
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=23.49 E-value=1.4e+02 Score=22.71 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=17.2
Q ss_pred HHHhhcCCCcEEEEcCCCc--chHHHHHH
Q 044012 109 EKLFREQNPNCIVSDNLFP--WTVSIAEE 135 (490)
Q Consensus 109 ~~~l~~~~pD~VI~D~~~~--~~~~~A~~ 135 (490)
.+.+++.+||+||.|...+ .+..+.+.
T Consensus 47 l~~l~~~~~dlvllD~~lp~~~g~~~~~~ 75 (140)
T 3c97_A 47 LQAYQNRQFDVIIMDIQMPVMDGLEAVSE 75 (140)
T ss_dssp HHHHHHSCCSEEEECTTCCSSCHHHHHHH
T ss_pred HHHHhcCCCCEEEEeCCCCCCcHHHHHHH
Confidence 3445566899999997554 34444443
No 465
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=23.49 E-value=67 Score=28.95 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=23.9
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|++|+++- +.|.+- ..|++.|.++||+|+.++-.
T Consensus 4 ~~~ilVtG--atG~iG--~~l~~~L~~~g~~V~~l~R~ 37 (308)
T 1qyc_A 4 RSRILLIG--ATGYIG--RHVAKASLDLGHPTFLLVRE 37 (308)
T ss_dssp CCCEEEES--TTSTTH--HHHHHHHHHTTCCEEEECCC
T ss_pred CCEEEEEc--CCcHHH--HHHHHHHHhCCCCEEEEECC
Confidence 46776654 444442 46889999999999987754
No 466
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=23.46 E-value=91 Score=27.65 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=29.2
Q ss_pred HHHHHhhcCCCcEEEEcCCCc------chHHHHHHhCCCeEEEecc
Q 044012 107 EIEKLFREQNPNCIVSDNLFP------WTVSIAEELGIPRLAFTGS 146 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~------~~~~~A~~lgiP~v~~~~~ 146 (490)
.+.+++++.+||+|++-.-.. -+..+|+.||+|.+...+.
T Consensus 104 ~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 149 (252)
T 1efp_B 104 ILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASK 149 (252)
T ss_dssp HHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEEE
Confidence 344445556899999776442 5888999999999987543
No 467
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=23.42 E-value=84 Score=27.42 Aligned_cols=33 Identities=15% Similarity=-0.004 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.|+++++.++.| --.++|+.|+++|++|+++.-
T Consensus 2 ~k~vlVTGas~g---IG~~ia~~l~~~G~~V~~~~r 34 (247)
T 3dii_A 2 NRGVIVTGGGHG---IGKQICLDFLEAGDKVCFIDI 34 (247)
T ss_dssp CCEEEEESTTSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 356677755442 236889999999999988764
No 468
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=23.41 E-value=48 Score=29.37 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEE
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTII 41 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~ 41 (490)
|||.|+-.|..| ..+|+.|++.||+|++.
T Consensus 1 M~I~iIG~G~mG-----~~la~~l~~~g~~V~~~ 29 (264)
T 1i36_A 1 LRVGFIGFGEVA-----QTLASRLRSRGVEVVTS 29 (264)
T ss_dssp CEEEEESCSHHH-----HHHHHHHHHTTCEEEEC
T ss_pred CeEEEEechHHH-----HHHHHHHHHCCCeEEEe
Confidence 578888655444 36789999999999985
No 469
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=23.41 E-value=1.1e+02 Score=26.88 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=25.5
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|.+.. ++|.++++.++. -+ -.++|+.|+++|++|+++...
T Consensus 1 M~~~~-~~k~vlVTGas~-gI--G~~~a~~l~~~G~~v~~~~~~ 40 (264)
T 3i4f_A 1 MSLGR-FVRHALITAGTK-GL--GKQVTEKLLAKGYSVTVTYHS 40 (264)
T ss_dssp ------CCCEEEETTTTS-HH--HHHHHHHHHHTTCEEEEEESS
T ss_pred CCccc-ccCEEEEeCCCc-hh--HHHHHHHHHHCCCEEEEEcCC
Confidence 44433 457777775543 22 368999999999999988643
No 470
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A*
Probab=23.40 E-value=1.1e+02 Score=25.74 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
..++++-.+..|...-+..+++.|+++|+.|..+-.
T Consensus 28 ~p~vv~~hG~~~~~~~~~~~~~~l~~~g~~v~~~d~ 63 (236)
T 1zi8_A 28 APVIVIAQDIFGVNAFMRETVSWLVDQGYAAVCPDL 63 (236)
T ss_dssp EEEEEEECCTTBSCHHHHHHHHHHHHTTCEEEEECG
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHhCCcEEEeccc
Confidence 445666667777777889999999999998876653
No 471
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=23.37 E-value=99 Score=24.32 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=27.1
Q ss_pred HHHHHHhhcC--CCcEEEEcCCCc--chHHHHHHh-----CCCeEEEeccc
Q 044012 106 PEIEKLFREQ--NPNCIVSDNLFP--WTVSIAEEL-----GIPRLAFTGSG 147 (490)
Q Consensus 106 ~~l~~~l~~~--~pD~VI~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 147 (490)
.+..+.+++. +||+||.|.... .+..+.+.+ .+|.|+++...
T Consensus 71 ~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 71 EEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALG 121 (157)
T ss_dssp HHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccC
Confidence 4555556665 799999997554 344444433 58888876654
No 472
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=23.37 E-value=1.8e+02 Score=29.20 Aligned_cols=77 Identities=16% Similarity=0.104 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCceEEEEccCCCCCCchhhhccCchhHHHhhccCCCceEeeccch----------hHhhhccCCceee
Q 044012 299 TSEIAAALKESGHSFIWVVGKILKTDDDQEEESWLPDGFEDEVRRNDRGFIIKGWAP----------QVLILEHQAIGGF 368 (490)
Q Consensus 299 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~nv~~~~~~p----------~~~ll~~~~~~~~ 368 (490)
-+.+++.|.+.|.+.+..+.+. .. + .+...+. .+.++.+.-.. +..+-.++.+ +
T Consensus 14 a~~l~~~L~~~GV~~vfg~PG~---~~-------~--~l~~al~--~~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v--~ 77 (566)
T 1ozh_A 14 ADLVVSQLEAQGVRQVFGIPGA---KI-------D--KVFDSLL--DSSIRIIPVRHEANAAFMAAAVGRITGKAGV--A 77 (566)
T ss_dssp HHHHHHHHHHHTCCEEEEECCT---TT-------H--HHHHHGG--GSSSEEEECSSHHHHHHHHHHHHHHHSSCEE--E
T ss_pred HHHHHHHHHHCCCCEEEEcCCC---ch-------H--HHHHHHH--hCCCcEEEeCCHHHHHHHHHHHHHHHCCCEE--E
Confidence 4567777788888888777665 11 1 2222221 11233222111 1222233444 8
Q ss_pred cccCCh------hHHHHHHHhCCcEeecc
Q 044012 369 LTHCGW------NSILEGVSAGVPMVTWP 391 (490)
Q Consensus 369 ItHGG~------~s~~eal~~GvP~l~~P 391 (490)
++|.|- +.+.||-+.++|+|++-
T Consensus 78 ~~TsGpG~~N~~~~l~~A~~~~vPll~it 106 (566)
T 1ozh_A 78 LVTSGPGCSNLITGMATANSEGDPVVALG 106 (566)
T ss_dssp EECSTHHHHTTHHHHHHHHHHTCCEEEEE
T ss_pred EEccChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 899886 68999999999999984
No 473
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=23.33 E-value=1.3e+02 Score=22.88 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=19.5
Q ss_pred HHHHHhhcCCCcEEEEcCCCc--chHHHHHHh
Q 044012 107 EIEKLFREQNPNCIVSDNLFP--WTVSIAEEL 136 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~--~~~~~A~~l 136 (490)
+..+.+++.+||+||.|.... .+..+++.+
T Consensus 46 ~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 46 DVLKFLQHNKVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp HHHHHHHHCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHH
Confidence 344455567899999997554 455555554
No 474
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=23.33 E-value=69 Score=29.69 Aligned_cols=34 Identities=15% Similarity=-0.057 Sum_probs=24.8
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
++|+|++. |+.|.+- ..|++.|.++||+|+.+.-
T Consensus 8 ~~~~vlVt--GatG~iG--~~l~~~L~~~g~~V~~~~r 41 (357)
T 1rkx_A 8 QGKRVFVT--GHTGFKG--GWLSLWLQTMGATVKGYSL 41 (357)
T ss_dssp TTCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEE--CCCchHH--HHHHHHHHhCCCeEEEEeC
Confidence 45676655 4555543 5678999999999998874
No 475
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=23.33 E-value=1.2e+02 Score=26.86 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 9 HVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 9 ~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|+++++.++.| --.++|+.|+++|++|.++.-
T Consensus 11 k~~lVTGas~g---IG~aia~~l~~~G~~V~~~~r 42 (267)
T 3t4x_A 11 KTALVTGSTAG---IGKAIATSLVAEGANVLINGR 42 (267)
T ss_dssp CEEEETTCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCcH---HHHHHHHHHHHCCCEEEEEeC
Confidence 56667755432 236789999999999988764
No 476
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=23.25 E-value=1.2e+02 Score=26.45 Aligned_cols=39 Identities=18% Similarity=0.064 Sum_probs=24.4
Q ss_pred CCCCCCcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 1 MVSENQKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|.+..++ |+++++.++.| --.++|+.|+++|++|.++.-
T Consensus 1 M~~~~~~-k~vlVTGas~G---IG~aia~~l~~~G~~V~~~~r 39 (252)
T 3h7a_A 1 MSLTPRN-ATVAVIGAGDY---IGAEIAKKFAAEGFTVFAGRR 39 (252)
T ss_dssp ----CCS-CEEEEECCSSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCcCCCC-CEEEEECCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 5544443 55666644432 246899999999999988864
No 477
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=23.22 E-value=86 Score=28.15 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=27.6
Q ss_pred HhhHHHHHHHhhcCCCcEEEEcCCCc----------chHHHHHHhCCCeEEE
Q 044012 102 ELLRPEIEKLFREQNPNCIVSDNLFP----------WTVSIAEELGIPRLAF 143 (490)
Q Consensus 102 ~~~~~~l~~~l~~~~pD~VI~D~~~~----------~~~~~A~~lgiP~v~~ 143 (490)
..+...+.++|++.+||+||+-.... .+..+++..|+|.+.+
T Consensus 134 ~~l~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 185 (273)
T 3dff_A 134 GEVADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLW 185 (273)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEe
Confidence 45567778888889999999853221 1233556678876554
No 478
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=23.20 E-value=57 Score=29.27 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=23.6
Q ss_pred cceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 7 KLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
||||.|+-.|..|. .+|+.|.+ ||+|+++..
T Consensus 1 M~~i~iiG~G~~G~-----~~a~~l~~-g~~V~~~~~ 31 (289)
T 2cvz_A 1 MEKVAFIGLGAMGY-----PMAGHLAR-RFPTLVWNR 31 (289)
T ss_dssp -CCEEEECCSTTHH-----HHHHHHHT-TSCEEEECS
T ss_pred CCeEEEEcccHHHH-----HHHHHHhC-CCeEEEEeC
Confidence 46899997777664 46888889 999987753
No 479
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=23.19 E-value=1.1e+02 Score=26.28 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=27.3
Q ss_pred CCcceEEEEcCCCCCC----hHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGH----MVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GH----i~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
.+|.+|.+++....+. ..-...|++.|+++|+.|+.-...
T Consensus 11 ~~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vVsGGg~ 54 (215)
T 2a33_A 11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGS 54 (215)
T ss_dssp CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCS
T ss_pred CCCCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEEECCCh
Confidence 3455799996554442 234668889999999988765543
No 480
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=23.13 E-value=89 Score=26.56 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=27.6
Q ss_pred eEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEE
Q 044012 9 HVMFLP-YIAPGHMVPMVDMARLFAANGIQVTII 41 (490)
Q Consensus 9 ~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~ 41 (490)
.|++.. -++.|-..-...||..|+++|++|.++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 345555 368899999999999999999999985
No 481
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=23.11 E-value=2.7e+02 Score=24.96 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=23.9
Q ss_pred ceEEEEc-CCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLP-YIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~-~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+||.|+- .|..| ..+|..|++.||+|+++...
T Consensus 22 ~~I~iIGg~G~mG-----~~la~~l~~~G~~V~~~~~~ 54 (298)
T 2pv7_A 22 HKIVIVGGYGKLG-----GLFARYLRASGYPISILDRE 54 (298)
T ss_dssp CCEEEETTTSHHH-----HHHHHHHHTTTCCEEEECTT
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 5888885 44333 46788899999999988653
No 482
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=23.09 E-value=2.7e+02 Score=26.36 Aligned_cols=20 Identities=10% Similarity=-0.092 Sum_probs=16.1
Q ss_pred chHHHHHHhCCCeEEEeccc
Q 044012 128 WTVSIAEELGIPRLAFTGSG 147 (490)
Q Consensus 128 ~~~~~A~~lgiP~v~~~~~~ 147 (490)
....+|+.+|||+++..++.
T Consensus 281 ~lAl~Ak~~~vPfyV~ap~~ 300 (383)
T 2a0u_A 281 NLAVSAKFHGVKLYVAAPTT 300 (383)
T ss_dssp HHHHHHHHTTCCEEEECCGG
T ss_pred HHHHHHHHcCCCEEEeCCcc
Confidence 35778999999999986654
No 483
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=23.09 E-value=54 Score=32.80 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=26.3
Q ss_pred HHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 107 EIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
++.+.+++.+||++|.+. ....+|+.+|||++.+
T Consensus 340 el~~~i~~~~pDL~ig~~---~~~~~a~~~giP~~~i 373 (525)
T 3aek_B 340 EVEKAIEAAAPELILGTQ---MERNIAKKLGLPCAVI 373 (525)
T ss_dssp HHHHHHHHHCCSEEEECH---HHHHHHHHHTCCEEEC
T ss_pred HHHHHHhhcCCCEEEecc---hhHHHHHHcCCCEEEe
Confidence 455666777999999873 4666889999999875
No 484
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=23.00 E-value=45 Score=31.22 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=25.6
Q ss_pred CCcceEEEEcCCCCCChHHHHHHHHHHHHC-CCeEEEEeCC
Q 044012 5 NQKLHVMFLPYIAPGHMVPMVDMARLFAAN-GIQVTIILTT 44 (490)
Q Consensus 5 ~~~~~Il~~~~~~~GHi~p~l~LA~~L~~r-Gh~Vt~~~~~ 44 (490)
++||+|++. |+.|-+- ..|++.|.++ ||+|+.+.-.
T Consensus 22 m~~~~vlVt--GatG~iG--~~l~~~L~~~~g~~V~~~~r~ 58 (372)
T 3slg_A 22 MKAKKVLIL--GVNGFIG--HHLSKRILETTDWEVFGMDMQ 58 (372)
T ss_dssp -CCCEEEEE--SCSSHHH--HHHHHHHHHHSSCEEEEEESC
T ss_pred cCCCEEEEE--CCCChHH--HHHHHHHHhCCCCEEEEEeCC
Confidence 456777765 4455444 5788999998 9999998853
No 485
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=22.89 E-value=78 Score=27.73 Aligned_cols=32 Identities=9% Similarity=-0.049 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
||+++++.++.| + -.++|+.|+++|++|+++.
T Consensus 1 Mk~vlVTGas~g-I--G~~ia~~l~~~G~~V~~~~ 32 (254)
T 1zmt_A 1 MSTAIVTNVKHF-G--GMGSALRLSEAGHTVACHD 32 (254)
T ss_dssp -CEEEESSTTST-T--HHHHHHHHHHTTCEEEECC
T ss_pred CeEEEEeCCCch-H--HHHHHHHHHHCCCEEEEEe
Confidence 466777755433 3 3578999999999988765
No 486
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=22.88 E-value=90 Score=27.63 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=25.4
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
.+.|+++++.++.| + -.++|+.|+++|++|+++..
T Consensus 24 ~~~k~vlITGas~g-I--G~a~a~~l~~~G~~V~~~~~ 58 (272)
T 4e3z_A 24 SDTPVVLVTGGSRG-I--GAAVCRLAARQGWRVGVNYA 58 (272)
T ss_dssp CCSCEEEETTTTSH-H--HHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEECCCch-H--HHHHHHHHHHCCCEEEEEcC
Confidence 34577888755442 2 46899999999999988754
No 487
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=22.87 E-value=84 Score=26.17 Aligned_cols=37 Identities=8% Similarity=-0.019 Sum_probs=23.8
Q ss_pred cceEEEEcCCCC---CChHHHH-HHHHHHHHCC--CeEEEEeC
Q 044012 7 KLHVMFLPYIAP---GHMVPMV-DMARLFAANG--IQVTIILT 43 (490)
Q Consensus 7 ~~~Il~~~~~~~---GHi~p~l-~LA~~L~~rG--h~Vt~~~~ 43 (490)
||||+++..... |+..-+. .+++.|.++| ++|.++--
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEET
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 468877765544 5555544 4566677776 88877753
No 488
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=22.86 E-value=86 Score=31.18 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=34.2
Q ss_pred cceEEEEcCC---CCCChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 044012 7 KLHVMFLPYI---APGHMVPMVDMARLFAANGIQVTIILTTMNAR 48 (490)
Q Consensus 7 ~~~Il~~~~~---~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (490)
++|..|++.+ +.|--.-...|+..|.+||++||.+--..+..
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpyln 46 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYIN 46 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSS
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCccee
Confidence 3688899876 55777888999999999999999988765544
No 489
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=22.77 E-value=51 Score=32.48 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=26.6
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
..|||.++-.|..| +.+|..|+++||+|+++-.
T Consensus 7 ~~~~I~VIG~G~vG-----~~lA~~la~~G~~V~~~d~ 39 (478)
T 2y0c_A 7 GSMNLTIIGSGSVG-----LVTGACLADIGHDVFCLDV 39 (478)
T ss_dssp CCCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECS
T ss_pred CCceEEEECcCHHH-----HHHHHHHHhCCCEEEEEEC
Confidence 35899999766555 5689999999999998864
No 490
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=22.75 E-value=3.5e+02 Score=31.42 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=36.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTTMNARRF 50 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (490)
--+++..-|+.|-..-.+.++...+.+|..|.|++.+...+..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~ 426 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 426 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH
Confidence 3467777889999999999999999999999999987765543
No 491
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=22.59 E-value=54 Score=29.56 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
|||.|+-.|..|. .+|+.|.+.||+|+++..
T Consensus 1 m~i~iiG~G~mG~-----~~a~~l~~~g~~V~~~~~ 31 (296)
T 2gf2_A 1 MPVGFIGLGNMGN-----PMAKNLMKHGYPLIIYDV 31 (296)
T ss_dssp CCEEEECCSTTHH-----HHHHHHHHTTCCEEEECS
T ss_pred CeEEEEeccHHHH-----HHHHHHHHCCCEEEEEeC
Confidence 5788887766664 578889999999987753
No 492
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=22.54 E-value=98 Score=27.72 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=26.8
Q ss_pred HhhHHHHHHHhhcCCCcEEEEcCCCc----------chHHHHHHhCCCeEEE
Q 044012 102 ELLRPEIEKLFREQNPNCIVSDNLFP----------WTVSIAEELGIPRLAF 143 (490)
Q Consensus 102 ~~~~~~l~~~l~~~~pD~VI~D~~~~----------~~~~~A~~lgiP~v~~ 143 (490)
......+.+++++.+||+|++-.... .+..+++..|+|...+
T Consensus 131 ~~~~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 182 (270)
T 3dfi_A 131 AAIREDIESMIAECDPTLVLTCVAIGKHPDHKATRDATLLAARERGIPLRLW 182 (270)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCChhHHHHHHHHHHHHHHcCCCeeEe
Confidence 35567777888888999999753221 1233456667776554
No 493
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=22.49 E-value=56 Score=32.52 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCcEEEEcCCCcchHHHHHHhCCCeEEE
Q 044012 107 EIEKLFREQNPNCIVSDNLFPWTVSIAEELGIPRLAF 143 (490)
Q Consensus 107 ~l~~~l~~~~pD~VI~D~~~~~~~~~A~~lgiP~v~~ 143 (490)
++.+.+++.+||++|.+ .....+|+.+|||++.+
T Consensus 363 el~~~i~~~~pDl~ig~---~~~r~~a~k~gip~~~i 396 (511)
T 2xdq_B 363 VVGDAIARVEPAAIFGT---QMERHVGKRLNIPCGVI 396 (511)
T ss_dssp HHHHHHHHHCCSEEEEC---HHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhcCCCEEEec---cchHHHHHhcCCCeEec
Confidence 55566666789999976 34566788999999875
No 494
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=22.46 E-value=1.1e+02 Score=27.79 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=25.0
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
++|+|++. |+.|.+ -..|++.|.++||+|+.+.-.
T Consensus 12 ~~M~ilVt--GatG~i--G~~l~~~L~~~g~~V~~~~r~ 46 (342)
T 2x4g_A 12 AHVKYAVL--GATGLL--GHHAARAIRAAGHDLVLIHRP 46 (342)
T ss_dssp CCCEEEEE--STTSHH--HHHHHHHHHHTTCEEEEEECT
T ss_pred cCCEEEEE--CCCcHH--HHHHHHHHHHCCCEEEEEecC
Confidence 45677665 444443 357889999999999998753
No 495
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=22.39 E-value=44 Score=29.57 Aligned_cols=33 Identities=3% Similarity=-0.032 Sum_probs=24.1
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILT 43 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~ 43 (490)
+||||.|+-.|..| ..+++.|.+.||+|+++..
T Consensus 2 ~~m~i~iiG~G~mG-----~~~a~~l~~~g~~v~~~~~ 34 (259)
T 2ahr_A 2 NAMKIGIIGVGKMA-----SAIIKGLKQTPHELIISGS 34 (259)
T ss_dssp -CCEEEEECCSHHH-----HHHHHHHTTSSCEEEEECS
T ss_pred CccEEEEECCCHHH-----HHHHHHHHhCCCeEEEECC
Confidence 46899998765444 4578889999999877653
No 496
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=22.38 E-value=53 Score=32.07 Aligned_cols=32 Identities=28% Similarity=0.212 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 8 LHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 8 ~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
|||.|+-.|..| +.+|..|+++||+|+++-..
T Consensus 3 mkI~VIG~G~vG-----~~lA~~La~~G~~V~~~D~~ 34 (450)
T 3gg2_A 3 LDIAVVGIGYVG-----LVSATCFAELGANVRCIDTD 34 (450)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECcCHHH-----HHHHHHHHhcCCEEEEEECC
Confidence 699998665444 57899999999999987653
No 497
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=22.35 E-value=1.7e+02 Score=22.07 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=21.7
Q ss_pred CCCcEEEEcCCCc--chHHHHHHh------CCCeEEEecccH
Q 044012 115 QNPNCIVSDNLFP--WTVSIAEEL------GIPRLAFTGSGF 148 (490)
Q Consensus 115 ~~pD~VI~D~~~~--~~~~~A~~l------giP~v~~~~~~~ 148 (490)
.+||+||.|...+ .+..+++.+ .+|.|+++....
T Consensus 51 ~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~ 92 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFAD 92 (133)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCS
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCC
Confidence 5799999997654 344443332 468777766543
No 498
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=22.34 E-value=1.1e+02 Score=26.09 Aligned_cols=27 Identities=7% Similarity=0.282 Sum_probs=20.0
Q ss_pred ceEEEEcCCCC--CChHHHHHHHHHHHHC
Q 044012 8 LHVMFLPYIAP--GHMVPMVDMARLFAAN 34 (490)
Q Consensus 8 ~~Il~~~~~~~--GHi~p~l~LA~~L~~r 34 (490)
|||++..|.-+ -.+||...++++|...
T Consensus 1 m~VLvTGF~PF~~~~~NPS~~~v~~L~~~ 29 (206)
T 1iu8_A 1 MKILLTGFEPFGGDDKNPTMDIVEALSER 29 (206)
T ss_dssp CCEEEEEECCCTTCSCCHHHHHHHHHHHH
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHHhccc
Confidence 56777665522 3679999999999865
No 499
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=22.30 E-value=69 Score=31.99 Aligned_cols=35 Identities=29% Similarity=0.148 Sum_probs=28.9
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEeCC
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIILTT 44 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~~~ 44 (490)
+.+||.|+-.++.| |-.+|+.|+++|++|+..=..
T Consensus 18 ~~~~i~~iGiGg~G----ms~lA~~l~~~G~~V~~sD~~ 52 (524)
T 3hn7_A 18 QGMHIHILGICGTF----MGSLALLARALGHTVTGSDAN 52 (524)
T ss_dssp -CCEEEEETTTSHH----HHHHHHHHHHTTCEEEEEESC
T ss_pred cCCEEEEEEecHhh----HHHHHHHHHhCCCEEEEECCC
Confidence 56899999988776 778999999999999986543
No 500
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=22.29 E-value=96 Score=30.63 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=26.7
Q ss_pred CcceEEEEcCCCCCChHHHHHHHHHHHHCCCeEEEEe
Q 044012 6 QKLHVMFLPYIAPGHMVPMVDMARLFAANGIQVTIIL 42 (490)
Q Consensus 6 ~~~~Il~~~~~~~GHi~p~l~LA~~L~~rGh~Vt~~~ 42 (490)
+.+||.|+-.++.| |-.+|+.|+++|++|+..=
T Consensus 21 ~~~~v~viGiG~sG----~s~~A~~l~~~G~~V~~~D 53 (494)
T 4hv4_A 21 RVRHIHFVGIGGAG----MGGIAEVLANEGYQISGSD 53 (494)
T ss_dssp -CCEEEEETTTSTT----HHHHHHHHHHTTCEEEEEC
T ss_pred cCCEEEEEEEcHhh----HHHHHHHHHhCCCeEEEEE
Confidence 45799999988777 4458999999999999763
Done!