BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044014
         (127 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6R7C9|DPOL_OSHVF DNA polymerase OS=Ostreid herpesvirus 1 (isolate France) GN=ORF100
            PE=3 SV=1
          Length = 1878

 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 7/33 (21%)

Query: 5    RHCIINIIPSNETLLDLEPFNRMWHLSENGESC 37
            R+CI NI       L+LE  + +WH   N ESC
Sbjct: 1517 RYCISNI-------LELEDLDEVWHTLPNDESC 1542


>sp|B0RH22|EX7L_CLAMS Exodeoxyribonuclease 7 large subunit OS=Clavibacter michiganensis
           subsp. sepedonicus (strain ATCC 33113 / JCM 9667)
           GN=xseA PE=3 SV=1
          Length = 438

 Score = 30.0 bits (66), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 12/59 (20%)

Query: 39  QFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNP 97
           + DVI+IAR G     LL               D +L+ +AA+ + PL+ A+   AD P
Sbjct: 208 EVDVIVIARGGGDFQNLLVFS------------DEKLVRTAAACRTPLVSAIGHEADRP 254


>sp|A5CT74|EX7L_CLAM3 Exodeoxyribonuclease 7 large subunit OS=Clavibacter michiganensis
           subsp. michiganensis (strain NCPPB 382) GN=xseA PE=3
           SV=1
          Length = 438

 Score = 29.6 bits (65), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 12/59 (20%)

Query: 39  QFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNP 97
           + DVI+IAR G     LL               D +L+ +AA+ + PL+ A+   AD P
Sbjct: 208 EVDVIVIARGGGDFQNLLVFS------------DEKLVRTAAACRTPLVSAIGHEADRP 254


>sp|P41412|RES2_SCHPO Cell division cycle-related protein res2/pct1
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=res2 PE=1 SV=1
          Length = 657

 Score = 29.6 bits (65), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 16  ETLLDLEPFNRMWHLSENGESCGQFDVIIIARNG--KCANRLL 56
           E L+ ++PF  +  L    +S G   ++I ARNG   C N LL
Sbjct: 347 EKLISIQPFENVVRLVNLQDSNGDTSLLIAARNGAMDCVNSLL 389


>sp|A2C5A9|MUTS_PROM1 DNA mismatch repair protein MutS OS=Prochlorococcus marinus (strain
           NATL1A) GN=mutS PE=3 SV=1
          Length = 926

 Score = 29.6 bits (65), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 4   LRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQF----DVIIIARNGKCANRLLRMQ 59
           ++H    +I  N+T  +LE    +    +NG+  G      D  + A  G+C  R L   
Sbjct: 358 IKHNQAGLIIDNQTRRNLE----ITSTQKNGQFQGSLLWAIDKTLTAMGGRCIRRWLEEP 413

Query: 60  LSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMAD 95
           L+ I+++ +  +   LL  ++S +  + K +  M D
Sbjct: 414 LTEIYSIQSRQKIIGLLVESSSLRKNIRKILRAMGD 449


>sp|Q0CXU6|ATG15_ASPTN Putative lipase atg15 OS=Aspergillus terreus (strain NIH 2624 /
           FGSC A1156) GN=atg15 PE=3 SV=1
          Length = 613

 Score = 29.6 bits (65), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 13  PSNETLLDLEPFNRMWHLSENG--ESCGQFDVIIIARNGKCA-NRLLRMQLSSIWTLLAA 69
           P     LD++P  ++W LSE+G  +   +FD  +IA +      RL   + S I      
Sbjct: 84  PDLHRRLDIQPHTQLWVLSEDGTDKEAAEFDTPLIASSHPVTIQRLADRRPSVI------ 137

Query: 70  SEDPRLLGSAASFKAPLLKAVSWMAD 95
             +  LL +  S  A +L    W+ D
Sbjct: 138 --EEHLLAARMSGSASVLSESDWVMD 161


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,012,345
Number of Sequences: 539616
Number of extensions: 1652996
Number of successful extensions: 3050
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3047
Number of HSP's gapped (non-prelim): 14
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)