Query 044014
Match_columns 127
No_of_seqs 103 out of 146
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 10:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 99.9 2.9E-27 6.2E-32 194.4 5.1 106 13-124 121-245 (331)
2 TIGR00562 proto_IX_ox protopor 98.6 3.6E-07 7.8E-12 76.4 10.3 103 12-120 240-364 (462)
3 TIGR03467 HpnE squalene-associ 98.6 5.3E-07 1.2E-11 73.3 10.6 100 12-119 214-327 (419)
4 PLN02576 protoporphyrinogen ox 98.3 7.9E-06 1.7E-10 69.4 10.2 92 12-103 254-372 (496)
5 PRK11883 protoporphyrinogen ox 98.1 2.9E-05 6.2E-10 64.3 10.0 105 12-121 236-357 (451)
6 PRK12416 protoporphyrinogen ox 97.6 0.00038 8.3E-09 58.7 9.4 61 12-73 241-312 (463)
7 PLN02268 probable polyamine ox 96.6 0.027 6E-07 47.1 10.0 101 12-121 213-333 (435)
8 PLN02328 lysine-specific histo 96.4 0.028 6E-07 52.5 10.1 102 12-122 449-573 (808)
9 PRK07233 hypothetical protein; 96.2 0.014 3E-07 48.0 6.3 63 12-75 215-290 (434)
10 TIGR02732 zeta_caro_desat caro 96.0 0.02 4.4E-07 49.4 6.5 66 12-77 236-324 (474)
11 PF01593 Amino_oxidase: Flavin 95.9 0.012 2.7E-07 46.4 4.5 88 12-101 226-332 (450)
12 COG1232 HemY Protoporphyrinoge 95.8 0.02 4.3E-07 50.1 5.5 67 5-73 223-300 (444)
13 PLN02529 lysine-specific histo 95.6 0.12 2.5E-06 47.9 10.2 62 12-74 369-446 (738)
14 PLN02612 phytoene desaturase 94.0 0.22 4.8E-06 44.2 7.3 65 12-77 325-406 (567)
15 TIGR02731 phytoene_desat phyto 93.6 0.27 5.9E-06 41.4 6.8 65 12-76 230-315 (453)
16 PF13454 NAD_binding_9: FAD-NA 93.1 0.21 4.5E-06 36.7 4.8 39 6-47 114-153 (156)
17 COG2907 Predicted NAD/FAD-bind 92.3 0.23 5E-06 43.3 4.7 44 12-56 234-278 (447)
18 PF13738 Pyr_redox_3: Pyridine 91.0 0.29 6.3E-06 36.1 3.4 36 12-48 99-135 (203)
19 PRK07208 hypothetical protein; 90.0 1.3 2.9E-05 37.4 7.0 64 12-75 235-317 (479)
20 PF07156 Prenylcys_lyase: Pren 89.6 0.54 1.2E-05 40.1 4.4 43 9-53 140-189 (368)
21 PLN02568 polyamine oxidase 89.4 0.99 2.1E-05 40.1 6.0 42 12-54 257-299 (539)
22 TIGR02733 desat_CrtD C-3',4' d 88.3 8.7 0.00019 32.8 10.9 62 12-73 249-331 (492)
23 PLN02487 zeta-carotene desatur 84.8 2.9 6.3E-05 37.6 6.3 64 14-77 314-400 (569)
24 PF01266 DAO: FAD dependent ox 83.1 2.9 6.2E-05 32.7 5.1 57 13-72 165-228 (358)
25 PLN03000 amine oxidase 80.2 3.5 7.6E-05 39.2 5.3 62 12-74 393-470 (881)
26 TIGR02734 crtI_fam phytoene de 80.1 6.8 0.00015 33.5 6.7 59 12-71 236-312 (502)
27 PLN02172 flavin-containing mon 80.1 2.4 5.1E-05 36.9 3.9 37 12-48 130-170 (461)
28 PF00743 FMO-like: Flavin-bind 79.3 1.6 3.5E-05 38.7 2.7 38 10-47 101-146 (531)
29 PRK09897 hypothetical protein; 70.7 7.3 0.00016 34.8 4.6 39 9-48 124-163 (534)
30 PLN02676 polyamine oxidase 64.1 11 0.00023 32.9 4.2 62 12-74 247-325 (487)
31 TIGR03219 salicylate_mono sali 54.9 16 0.00035 30.3 3.6 36 12-48 120-156 (414)
32 PF13434 K_oxygenase: L-lysine 52.3 14 0.00031 30.8 2.9 34 14-47 298-337 (341)
33 PF14081 DUF4262: Domain of un 52.0 42 0.00092 23.9 5.0 47 10-56 1-50 (125)
34 TIGR03197 MnmC_Cterm tRNA U-34 50.0 27 0.00058 28.7 4.1 58 13-72 152-213 (381)
35 PRK07588 hypothetical protein; 49.3 25 0.00055 28.8 3.9 37 12-49 119-156 (391)
36 KOG1399 Flavin-containing mono 47.7 21 0.00045 31.4 3.3 36 12-47 109-149 (448)
37 COG2072 TrkA Predicted flavopr 45.0 31 0.00067 29.8 3.9 57 10-73 99-160 (443)
38 TIGR02352 thiamin_ThiO glycine 43.4 67 0.0015 25.1 5.3 57 14-73 156-214 (337)
39 COG1231 Monoamine oxidase [Ami 42.9 59 0.0013 29.0 5.3 65 10-75 221-300 (450)
40 TIGR01292 TRX_reduct thioredox 42.6 44 0.00096 25.6 4.1 37 9-48 72-109 (300)
41 PRK01747 mnmC bifunctional tRN 41.8 35 0.00075 30.7 3.8 56 14-71 426-485 (662)
42 PLN02976 amine oxidase 39.1 47 0.001 34.2 4.5 41 12-53 948-999 (1713)
43 PF02558 ApbA: Ketopantoate re 37.1 32 0.00069 24.3 2.4 21 36-56 64-84 (151)
44 PRK06847 hypothetical protein; 35.8 64 0.0014 26.0 4.2 39 12-51 124-163 (375)
45 PRK06753 hypothetical protein; 35.3 63 0.0014 26.1 4.1 36 12-48 113-149 (373)
46 PRK11259 solA N-methyltryptoph 34.1 54 0.0012 26.4 3.5 55 14-71 168-226 (376)
47 PF03486 HI0933_like: HI0933-l 33.2 46 0.001 28.7 3.1 37 12-49 126-164 (409)
48 TIGR03385 CoA_CoA_reduc CoA-di 32.1 71 0.0015 26.7 4.0 34 14-47 63-99 (427)
49 PRK05714 2-octaprenyl-3-methyl 31.2 76 0.0016 26.1 4.0 42 14-56 131-174 (405)
50 PRK05732 2-octaprenyl-6-methox 30.8 78 0.0017 25.7 4.0 35 13-48 131-166 (395)
51 TIGR01984 UbiH 2-polyprenyl-6- 30.7 71 0.0015 25.8 3.7 42 14-56 125-168 (382)
52 PRK08773 2-octaprenyl-3-methyl 29.3 87 0.0019 25.6 4.0 44 12-56 130-175 (392)
53 PRK07494 2-octaprenyl-6-methox 29.1 76 0.0016 25.8 3.6 36 13-49 129-165 (388)
54 PRK07236 hypothetical protein; 28.9 98 0.0021 25.4 4.3 35 12-47 115-150 (386)
55 PF03807 F420_oxidored: NADP o 28.7 52 0.0011 21.3 2.2 20 37-56 59-78 (96)
56 PRK07333 2-octaprenyl-6-methox 28.7 91 0.002 25.4 4.0 43 13-56 129-173 (403)
57 TIGR01377 soxA_mon sarcosine o 28.3 84 0.0018 25.3 3.7 34 14-49 164-198 (380)
58 PRK09564 coenzyme A disulfide 28.2 87 0.0019 26.2 3.9 35 14-48 75-112 (444)
59 PRK10262 thioredoxin reductase 27.3 85 0.0019 25.0 3.6 30 17-47 84-113 (321)
60 KOG1276 Protoporphyrinogen oxi 27.1 83 0.0018 28.4 3.7 64 14-77 268-348 (491)
61 PRK13512 coenzyme A disulfide 27.0 99 0.0022 26.2 4.1 33 15-47 78-113 (438)
62 PRK13339 malate:quinone oxidor 26.4 87 0.0019 27.8 3.7 43 13-56 203-251 (497)
63 KOG0273 Beta-transducin family 25.9 67 0.0015 29.1 2.9 49 2-56 219-273 (524)
64 PF02080 TrkA_C: TrkA-C domain 25.6 1.6E+02 0.0036 17.8 4.0 40 15-56 27-67 (71)
65 TIGR01988 Ubi-OHases Ubiquinon 24.7 1.1E+02 0.0025 24.4 3.9 34 14-48 126-160 (385)
66 PRK08020 ubiF 2-octaprenyl-3-m 24.3 1.1E+02 0.0024 24.9 3.8 35 14-49 132-167 (391)
67 COG2081 Predicted flavoprotein 23.9 1.1E+02 0.0024 27.0 3.8 37 13-50 129-166 (408)
68 PRK09126 hypothetical protein; 23.9 1.3E+02 0.0027 24.5 4.0 37 12-49 128-165 (392)
69 PRK11728 hydroxyglutarate oxid 23.8 1.2E+02 0.0027 24.9 4.0 35 13-49 167-202 (393)
70 TIGR00275 flavoprotein, HI0933 23.5 1.3E+02 0.0028 25.3 4.1 37 12-49 122-158 (400)
71 TIGR00745 apbA_panE 2-dehydrop 22.8 75 0.0016 24.7 2.4 20 37-56 57-76 (293)
72 PRK04965 NADH:flavorubredoxin 22.5 1.2E+02 0.0027 24.8 3.7 39 9-49 198-237 (377)
73 PRK15317 alkyl hydroperoxide r 21.1 1.4E+02 0.0031 25.9 4.0 35 14-49 285-320 (517)
74 PRK12409 D-amino acid dehydrog 20.9 1.6E+02 0.0034 24.3 4.1 37 14-50 216-257 (410)
75 PRK06249 2-dehydropantoate 2-r 20.5 62 0.0013 26.2 1.6 21 36-56 69-89 (313)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.94 E-value=2.9e-27 Score=194.41 Aligned_cols=106 Identities=14% Similarity=0.328 Sum_probs=98.1
Q ss_pred cCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------------hccccceeeeeeeccCCCC
Q 044014 13 PSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------------RMQLSSIWTLLAASEDPRL 75 (127)
Q Consensus 13 ~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------------~~~~~pcWalm~af~~pl~ 75 (127)
=.+|+|+++.+.++.|+|. ++|..+++||.||||.|+||+..|| .+.|.|||++|+.|++||+
T Consensus 121 ~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~ 200 (331)
T COG3380 121 VLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLD 200 (331)
T ss_pred hhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCC
Confidence 3589999999999999998 7899999999999999999999998 5579999999999999999
Q ss_pred CCCcccccccccc--ceeEEEeCCCCCCCCCCCCCcEEEEEeChhhhhhcC
Q 044014 76 LGSAASFKAPLLK--AVSWMADNPGKLFRSQSDVPHCWTFFSTAAYGKRKK 124 (127)
Q Consensus 76 ~~~~~~~dga~v~--~LsWiarnssKPGR~~r~~~e~WVlhAt~~wS~~Hk 124 (127)
.| ++|.|+. +|.|++||.|||||. ...|.||+||+|+||++|.
T Consensus 201 ~P----~~G~~vdg~~laWla~d~sK~g~~--p~~~~~vvqasp~wSr~h~ 245 (331)
T COG3380 201 RP----WPGNFVDGHPLAWLARDASKKGHV--PDGEIWVVQASPDWSREHL 245 (331)
T ss_pred CC----CCCcccCCCeeeeeeccccCCCCC--CcCceEEEEeCchHHHHhh
Confidence 99 9999988 999999999999953 4578999999999999996
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.61 E-value=3.6e-07 Score=76.45 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=74.5
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH------------hccccceeeeeeeccCC-CCCC
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL------------RMQLSSIWTLLAASEDP-RLLG 77 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll------------~~~~~pcWalm~af~~p-l~~~ 77 (127)
|=.+++|.+|++.+++|.+. .+|+ .-.||+||+|+|++++..|+ ++.+.||+.+++.|+++ +..+
T Consensus 240 i~~~~~V~~I~~~~~~~~v~~~~g~-~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~ 318 (462)
T TIGR00562 240 VYKGTKVTKLSHRGSNYTLELDNGV-TVETDSVVVTAPHKAAAGLLSELSNSASSHLDKIHSPPVANVNLGFPEGSVDGE 318 (462)
T ss_pred EEcCCeEEEEEecCCcEEEEECCCc-EEEcCEEEECCCHHHHHHHhcccCHHHHHHHhcCCCCceEEEEEEEchHHcCCC
Confidence 44689999999999999997 6664 34679999999999999987 45689999999999875 3322
Q ss_pred Ccccccc--ccc------cceeEEEeCCCCCCCCCCCCCcEEEEEeChhhh
Q 044014 78 SAASFKA--PLL------KAVSWMADNPGKLFRSQSDVPHCWTFFSTAAYG 120 (127)
Q Consensus 78 ~~~~~dg--a~v------~~LsWiarnssKPGR~~r~~~e~WVlhAt~~wS 120 (127)
.++ ..+ ..+.|+..++.+|++. .++...++++.+..++
T Consensus 319 ----~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~-p~g~~~l~~~~~g~~~ 364 (462)
T TIGR00562 319 ----LEGFGFLISRSSKFAILGCIFTSKLFPNRA-PPGKTLLTAYIGGATD 364 (462)
T ss_pred ----CCceEEEccCCCCCceEEEEEEccccCCcC-CCCcEEEEEEeCCCCC
Confidence 222 111 1589999888888853 2233356666665443
No 3
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.59 E-value=5.3e-07 Score=73.31 Aligned_cols=100 Identities=15% Similarity=0.068 Sum_probs=74.1
Q ss_pred ecCCceEEEEEecCCceEEe--cCCCccCCCcEEEEccChHhHHHHH----------hccccceeeeeeeccCCCCCCCc
Q 044014 12 IPSNETLLDLEPFNRMWHLS--ENGESCGQFDVIIIARNGKCANRLL----------RMQLSSIWTLLAASEDPRLLGSA 79 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~--~~g~~~G~FD~VVvA~Pa~QA~~Ll----------~~~~~pcWalm~af~~pl~~~~~ 79 (127)
|=.+++|.+|+..++++.+. .+|+ ...+|+||+|+|++++..|| ..++.||+.+++.|++|...+
T Consensus 214 i~~~~~V~~i~~~~~~~~~~~~~~g~-~~~~d~vi~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~-- 290 (419)
T TIGR03467 214 VRLGTRVRSIEANAGGIRALVLSGGE-TLPADAVVLAVPPRHAASLLPGEDLGALLTALGYSPITTVHLRLDRAVRLP-- 290 (419)
T ss_pred EEcCCeeeEEEEcCCcceEEEecCCc-cccCCEEEEcCCHHHHHHhCCCchHHHHHhhcCCcceEEEEEEeCCCcCCC--
Confidence 45789999999999886653 3443 45689999999999999987 346789999999999987433
Q ss_pred cccccc-ccc-ceeEEEeCCCCCCCCCCCCCcEEEEEeChhh
Q 044014 80 ASFKAP-LLK-AVSWMADNPGKLFRSQSDVPHCWTFFSTAAY 119 (127)
Q Consensus 80 ~~~dga-~v~-~LsWiarnssKPGR~~r~~~e~WVlhAt~~w 119 (127)
.+.. +.. +..|+.+++.|++ ..+..+++++...++
T Consensus 291 --~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 327 (419)
T TIGR03467 291 --APMVGLVGGLAQWLFDRGQLAG---EPGYLAVVISAARDL 327 (419)
T ss_pred --CCeeeecCCceeEEEECCcCCC---CCCEEEEEEecchhh
Confidence 2221 123 7899999888887 335556777765544
No 4
>PLN02576 protoporphyrinogen oxidase
Probab=98.27 E-value=7.9e-06 Score=69.38 Aligned_cols=92 Identities=9% Similarity=0.043 Sum_probs=66.3
Q ss_pred ecCCceEEEEEecCCc-eEEe-c--CCCccCCCcEEEEccChHhHHHHH------------hccccceeeeeeeccCCC-
Q 044014 12 IPSNETLLDLEPFNRM-WHLS-E--NGESCGQFDVIIIARNGKCANRLL------------RMQLSSIWTLLAASEDPR- 74 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~-W~L~-~--~g~~~G~FD~VVvA~Pa~QA~~Ll------------~~~~~pcWalm~af~~pl- 74 (127)
|=.+++|.+|++.+++ |.+. . +|+....||+||+|+|++++..|+ .+.+.||+.+++.|+++.
T Consensus 254 i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~ 333 (496)
T PLN02576 254 VKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKSPAAADALPEFYYPPVAAVTTSYPKEAV 333 (496)
T ss_pred EEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccCHHHHHHhccCCCCceEEEEEEEchHHc
Confidence 5579999999999886 9886 3 343346789999999999999987 446889999999998853
Q ss_pred CC-C-Ccccccccc--c------cceeEEEeCCCCCCCC
Q 044014 75 LL-G-SAASFKAPL--L------KAVSWMADNPGKLFRS 103 (127)
Q Consensus 75 ~~-~-~~~~~dga~--v------~~LsWiarnssKPGR~ 103 (127)
.. . .+..+++.. + +.+.|+.+++.+|+|.
T Consensus 334 ~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~ 372 (496)
T PLN02576 334 KRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRA 372 (496)
T ss_pred ccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCC
Confidence 21 0 000022221 1 1478999999999853
No 5
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.11 E-value=2.9e-05 Score=64.35 Aligned_cols=105 Identities=12% Similarity=0.059 Sum_probs=74.0
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------hccccceeeeeeeccCCCCCCCcc
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------RMQLSSIWTLLAASEDPRLLGSAA 80 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------~~~~~pcWalm~af~~pl~~~~~~ 80 (127)
|=.+++|.+++..+++|.+. .+|+ ...||.||+|+|..++.+|+ ++.+.++..+++.|+++.+.. .
T Consensus 236 i~~~~~V~~i~~~~~~~~v~~~~g~-~~~~d~vI~a~p~~~~~~l~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~--~ 312 (451)
T PRK11883 236 IHKGTPVTKIDKSGDGYEIVLSNGG-EIEADAVIVAVPHPVLPSLFVAPPAFALFKTIPSTSVATVALAFPESATNL--P 312 (451)
T ss_pred EEeCCEEEEEEEcCCeEEEEECCCC-EEEcCEEEECCCHHHHHHhccChhHHHHHhCCCCCceEEEEEEeccccCCC--C
Confidence 56789999999999999987 6664 35789999999999999987 456889999999999985211 0
Q ss_pred cccccccc-----ceeEEEeCCCCC-CCCCCCCCcEEEEEeChhhhh
Q 044014 81 SFKAPLLK-----AVSWMADNPGKL-FRSQSDVPHCWTFFSTAAYGK 121 (127)
Q Consensus 81 ~~dga~v~-----~LsWiarnssKP-GR~~r~~~e~WVlhAt~~wS~ 121 (127)
...+.++. ++.++..++.|. ++. .++...+.+....|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--p~g~~~~~~~~~~~~~ 357 (451)
T PRK11883 313 DGTGFLVARNSDYTITACTWTSKKWPHTT--PEGKVLLRLYVGRPGD 357 (451)
T ss_pred CceEEEecCCCCCcEEEEEeEcCcCCCCC--CCCcEEEEEecCCCCC
Confidence 02233222 466777777773 321 2234677777766643
No 6
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.65 E-value=0.00038 Score=58.73 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=51.6
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------hccccceeeeeeeccCC
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------RMQLSSIWTLLAASEDP 73 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------~~~~~pcWalm~af~~p 73 (127)
|=.+++|.++++.+++|.+. .+|+. -.+|.||+|+|.+++..|+ +..+.+|..+++.|+.+
T Consensus 241 i~~~~~V~~I~~~~~~~~v~~~~g~~-~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~~~~~~~v~l~~~~~ 312 (463)
T PRK12416 241 VKKGAVTTAVSKQGDRYEISFANHES-IQADYVVLAAPHDIAETLLQSNELNEQFHTFKNSSLISIYLGFDIL 312 (463)
T ss_pred EEcCCEEEEEEEcCCEEEEEECCCCE-EEeCEEEECCCHHHHHhhcCCcchhHHHhcCCCCceEEEEEEechh
Confidence 45799999999999999997 56643 4679999999999999988 34578999999999965
No 7
>PLN02268 probable polyamine oxidase
Probab=96.55 E-value=0.027 Score=47.07 Aligned_cols=101 Identities=10% Similarity=0.023 Sum_probs=66.3
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------------hccccceeeeeeeccCCC
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------------RMQLSSIWTLLAASEDPR 74 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------------~~~~~pcWalm~af~~pl 74 (127)
|=.++.|.++.+.+++|.+. .+|+. -.+|.||+|+|..++.+++ +..|.++.-+++.|+++.
T Consensus 213 i~~~~~V~~i~~~~~~v~v~~~~g~~-~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~f 291 (435)
T PLN02268 213 IRLNHRVTKIVRRYNGVKVTVEDGTT-FVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVF 291 (435)
T ss_pred eeCCCeeEEEEEcCCcEEEEECCCcE-EEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCC
Confidence 56789999999999999998 66643 3679999999999986532 446778999999999974
Q ss_pred CCCCcccccccccc---ceeEEEeCCCCCCCCCCCCCcEEEEEeChhhhh
Q 044014 75 LLGSAASFKAPLLK---AVSWMADNPGKLFRSQSDVPHCWTFFSTAAYGK 121 (127)
Q Consensus 75 ~~~~~~~~dga~v~---~LsWiarnssKPGR~~r~~~e~WVlhAt~~wS~ 121 (127)
-.. ..+-|.... ...|..+.+.++| ....+.+.+.++++
T Consensus 292 w~~--~~~~g~~~~~~~~~~~~~~~~~~~g------~~~l~~~~~g~~a~ 333 (435)
T PLN02268 292 WPN--VEFLGVVAPTSYGCSYFLNLHKATG------HPVLVYMPAGRLAR 333 (435)
T ss_pred CCC--CceeeccCCCCCCceEEEecccCCC------CCEEEEEeccHHHH
Confidence 321 012222221 3345544333333 22567676665544
No 8
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.43 E-value=0.028 Score=52.49 Aligned_cols=102 Identities=7% Similarity=-0.052 Sum_probs=68.0
Q ss_pred ecCCceEEEEEecCCceEEecCCCccCCCcEEEEccChHhHHH----HH------------hccccceeeeeeeccCCCC
Q 044014 12 IPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANR----LL------------RMQLSSIWTLLAASEDPRL 75 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~~~g~~~G~FD~VVvA~Pa~QA~~----Ll------------~~~~~pcWalm~af~~pl~ 75 (127)
|=.++.|.+|.+.+++|.+..+|+. -.||.||+|+|..+... +. ++.+.++.-+++.|+++.-
T Consensus 449 I~ln~~V~~I~~~~dgV~V~~~G~~-~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW 527 (808)
T PLN02328 449 IFYERTVESIRYGVDGVIVYAGGQE-FHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFW 527 (808)
T ss_pred cccCCeeEEEEEcCCeEEEEeCCeE-EEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 5679999999999999988755543 46799999999999773 11 5578899999999998743
Q ss_pred CCCccccccccccceeEEEeCCCCCCCC-------CCCCCcEEEEEeChhhhhh
Q 044014 76 LGSAASFKAPLLKAVSWMADNPGKLFRS-------QSDVPHCWTFFSTAAYGKR 122 (127)
Q Consensus 76 ~~~~~~~dga~v~~LsWiarnssKPGR~-------~r~~~e~WVlhAt~~wS~~ 122 (127)
-.. .+ .+.++..+.++.|+- ...+...++.+.+.+++..
T Consensus 528 ~~~---~d-----~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~ 573 (808)
T PLN02328 528 GGE---ID-----TFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVK 573 (808)
T ss_pred cCC---CC-----ceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHH
Confidence 210 11 234444444443310 0123357888877777654
No 9
>PRK07233 hypothetical protein; Provisional
Probab=96.23 E-value=0.014 Score=47.98 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=50.2
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH------------hccccceeeeeeeccCCCC
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL------------RMQLSSIWTLLAASEDPRL 75 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll------------~~~~~pcWalm~af~~pl~ 75 (127)
|=.+++|.+++.+++++.+. .+|+ ...+|.||+|+|..++.+|+ ...+.++..+.+.|++++.
T Consensus 215 v~~~~~V~~i~~~~~~~~~~~~~~~-~~~ad~vI~a~p~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 290 (434)
T PRK07233 215 IRLGTPVTSVVIDGGGVTGVEVDGE-EEDFDAVISTAPPPILARLVPDLPADVLARLRRIDYQGVVCMVLKLRRPLT 290 (434)
T ss_pred EEeCCCeeEEEEcCCceEEEEeCCc-eEECCEEEECCCHHHHHhhcCCCcHHHHhhhcccCccceEEEEEEecCCCC
Confidence 45689999999998888764 4443 35589999999999999886 3345699999999999864
No 10
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=95.98 E-value=0.02 Score=49.40 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=48.4
Q ss_pred ecCCceEEEEEecC--CceE-E---e-cCCC--ccCCCcEEEEccChHhHHHHH--------------hccccceeeeee
Q 044014 12 IPSNETLLDLEPFN--RMWH-L---S-ENGE--SCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLA 68 (127)
Q Consensus 12 ~~~~t~V~~l~~~~--~~W~-L---~-~~g~--~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~ 68 (127)
|=.+++|.+|+.++ ++|. + . .+|+ ..-.+|+||+|+|+.++.+|+ .....||=++-+
T Consensus 236 i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l 315 (474)
T TIGR02732 236 FHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQL 315 (474)
T ss_pred EECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEE
Confidence 55789999998865 3552 3 2 2231 223579999999999999998 234579999999
Q ss_pred eccCCCCCC
Q 044014 69 ASEDPRLLG 77 (127)
Q Consensus 69 af~~pl~~~ 77 (127)
.|+.++..+
T Consensus 316 ~~~~~v~~~ 324 (474)
T TIGR02732 316 RYDGWVTEL 324 (474)
T ss_pred Eeccccccc
Confidence 999877654
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.91 E-value=0.012 Score=46.40 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=62.6
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHH--HH------------hccccceeeeeeeccCCCCC
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANR--LL------------RMQLSSIWTLLAASEDPRLL 76 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~--Ll------------~~~~~pcWalm~af~~pl~~ 76 (127)
|=.+++|++|+.++++..+. .+|+ .-.||.||+|+|...+.. |. ...+.+.-.+.+.|+++...
T Consensus 226 i~l~~~V~~I~~~~~~v~v~~~~g~-~~~ad~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~ 304 (450)
T PF01593_consen 226 IRLNTPVTRIEREDGGVTVTTEDGE-TIEADAVISAVPPSVLKNILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWP 304 (450)
T ss_dssp EESSEEEEEEEEESSEEEEEETTSS-EEEESEEEE-S-HHHHHTSEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGG
T ss_pred eecCCcceeccccccccccccccce-EEecceeeecCchhhhhhhhhcccccccccccccccccCcceeEEEeeeccccc
Confidence 55789999999999999998 6665 566899999999999985 32 34567777999999987664
Q ss_pred CCcccccccccc----ceeEEEeCCCCCC
Q 044014 77 GSAASFKAPLLK----AVSWMADNPGKLF 101 (127)
Q Consensus 77 ~~~~~~dga~v~----~LsWiarnssKPG 101 (127)
... .+.+.... .+.++...+.+++
T Consensus 305 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (450)
T PF01593_consen 305 PDI-DFFGILYSDGFSPIGYVSDPSKFPG 332 (450)
T ss_dssp STT-TESEEEEESSTSSEEEEEEECCTTS
T ss_pred ccc-cccceecccCccccccccccccCcc
Confidence 300 02222222 4778888888887
No 12
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.77 E-value=0.02 Score=50.11 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=51.4
Q ss_pred ceeeeeeecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------hccccceeeeeeeccCC
Q 044014 5 RHCIINIIPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------RMQLSSIWTLLAASEDP 73 (127)
Q Consensus 5 ~~~~~~~~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------~~~~~pcWalm~af~~p 73 (127)
+.+..+ |..++.|+.+.+++.++.+. .+|+. ..||.||+|.|++...+|| .+..++.=++.++|+.+
T Consensus 223 ~~l~~~-i~~~~~V~~i~~~~~~~~~~~~~g~~-~~~D~VI~t~p~~~l~~ll~~~~~~~~~~~~~~~s~~~vv~~~~~~ 300 (444)
T COG1232 223 EKLEAK-IRTGTEVTKIDKKGAGKTIVDVGGEK-ITADGVISTAPLPELARLLGDEAVSKAAKELQYTSVVTVVVGLDEK 300 (444)
T ss_pred HHhhhc-eeecceeeEEEEcCCccEEEEcCCce-EEcceEEEcCCHHHHHHHcCCcchhhhhhhccccceEEEEEEeccc
Confidence 455666 89999999999998777665 44433 6689999999999999999 33444566677788775
No 13
>PLN02529 lysine-specific histone demethylase 1
Probab=95.64 E-value=0.12 Score=47.92 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=50.1
Q ss_pred ecCCceEEEEEecCCceEEecCCCccCCCcEEEEccChHhHHHHH----------------hccccceeeeeeeccCCC
Q 044014 12 IPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL----------------RMQLSSIWTLLAASEDPR 74 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~~~g~~~G~FD~VVvA~Pa~QA~~Ll----------------~~~~~pcWalm~af~~pl 74 (127)
|-.+++|.+|+..+++|.+..+++. -.+|+||+|+|..+...+. ++.|.++.-+++.|++|.
T Consensus 369 IrLnt~V~~I~~~~dGVtV~t~~~~-~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~F 446 (738)
T PLN02529 369 IFYGKTVDTIKYGNDGVEVIAGSQV-FQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVF 446 (738)
T ss_pred EEcCCceeEEEEcCCeEEEEECCEE-EEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCcc
Confidence 5579999999999999999844432 3579999999999987431 556789999999999974
No 14
>PLN02612 phytoene desaturase
Probab=93.99 E-value=0.22 Score=44.17 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=48.2
Q ss_pred ecCCceEEEEEecCCce--EEe-cCCCccCCCcEEEEccChHhHHHHH--------------hccccceeeeeeeccCCC
Q 044014 12 IPSNETLLDLEPFNRMW--HLS-ENGESCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAASEDPR 74 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W--~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af~~pl 74 (127)
|=.+++|.+|+.+++++ .+. .+|+.. .+|.||+|+|...+..|+ .....|+-.+.+.|++|+
T Consensus 325 I~l~~~V~~I~~~~~g~v~~v~~~~G~~~-~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~ 403 (567)
T PLN02612 325 VRLNSRIKKIELNDDGTVKHFLLTNGSVV-EGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKL 403 (567)
T ss_pred EEeCCeeeEEEECCCCcEEEEEECCCcEE-ECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECccc
Confidence 55789999999876663 243 456443 469999999999888876 123557899999999997
Q ss_pred CCC
Q 044014 75 LLG 77 (127)
Q Consensus 75 ~~~ 77 (127)
..+
T Consensus 404 ~~~ 406 (567)
T PLN02612 404 KNT 406 (567)
T ss_pred CCC
Confidence 544
No 15
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=93.56 E-value=0.27 Score=41.40 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=46.4
Q ss_pred ecCCceEEEEEecCCc----eEEe-cCCCc--cCCCcEEEEccChHhHHHHH--------------hccccceeeeeeec
Q 044014 12 IPSNETLLDLEPFNRM----WHLS-ENGES--CGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAAS 70 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~----W~L~-~~g~~--~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af 70 (127)
|=.++.|++|+..+++ +.+. ++|+. .-..|+||+|+|++++.+|| ..++.|+-.+.+.|
T Consensus 230 i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 309 (453)
T TIGR02731 230 VRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWF 309 (453)
T ss_pred EeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEE
Confidence 4578999999875543 6664 33321 23459999999999988887 11255899999999
Q ss_pred cCCCCC
Q 044014 71 EDPRLL 76 (127)
Q Consensus 71 ~~pl~~ 76 (127)
++++..
T Consensus 310 ~~~~~~ 315 (453)
T TIGR02731 310 DRKLTT 315 (453)
T ss_pred ccccCC
Confidence 998753
No 16
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.05 E-value=0.21 Score=36.69 Aligned_cols=39 Identities=13% Similarity=0.318 Sum_probs=31.1
Q ss_pred eeeeeeecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEcc
Q 044014 6 HCIINIIPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIAR 47 (127)
Q Consensus 6 ~~~~~~~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~ 47 (127)
++.++.+. .+|..+++.+++|.|. ++|... .||.||+|+
T Consensus 114 ~i~v~~~~--~~V~~i~~~~~~~~v~~~~g~~~-~~d~VvLa~ 153 (156)
T PF13454_consen 114 GITVRHVR--AEVVDIRRDDDGYRVVTADGQSI-RADAVVLAT 153 (156)
T ss_pred CcEEEEEe--eEEEEEEEcCCcEEEEECCCCEE-EeCEEEECC
Confidence 45666664 4899999999999997 777554 889999986
No 17
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=92.33 E-value=0.23 Score=43.28 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=37.3
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL 56 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll 56 (127)
|-+++.|.+|.+..+|=.|. .+| ....||.||+|+-+.||..||
T Consensus 234 i~t~~~V~~l~rlPdGv~l~~~~G-~s~rFD~vViAth~dqAl~mL 278 (447)
T COG2907 234 IETRTPVCRLRRLPDGVVLVNADG-ESRRFDAVVIATHPDQALALL 278 (447)
T ss_pred eecCCceeeeeeCCCceEEecCCC-CccccceeeeecChHHHHHhc
Confidence 55777899999998877776 666 457899999999999999999
No 18
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.95 E-value=0.29 Score=36.09 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=25.3
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccC
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARN 48 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~P 48 (127)
|-.+|+|.++++++++|.|. .+++..- +|.||+|+=
T Consensus 99 i~~~~~V~~v~~~~~~w~v~~~~~~~~~-a~~VVlAtG 135 (203)
T PF13738_consen 99 IRFNTRVESVRRDGDGWTVTTRDGRTIR-ADRVVLATG 135 (203)
T ss_dssp EETS--EEEEEEETTTEEEEETTS-EEE-EEEEEE---
T ss_pred cccCCEEEEEEEeccEEEEEEEecceee-eeeEEEeee
Confidence 55889999999999999998 6663433 899999985
No 19
>PRK07208 hypothetical protein; Provisional
Probab=89.97 E-value=1.3 Score=37.44 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=46.3
Q ss_pred ecCCceEEEEEecCCceE--Ee---cCCCc-cCCCcEEEEccChHhHHHHH-------------hccccceeeeeeeccC
Q 044014 12 IPSNETLLDLEPFNRMWH--LS---ENGES-CGQFDVIIIARNGKCANRLL-------------RMQLSSIWTLLAASED 72 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~--L~---~~g~~-~G~FD~VVvA~Pa~QA~~Ll-------------~~~~~pcWalm~af~~ 72 (127)
|=.+++|.+|+.++++|. +. .+|+. .-.+|.||+|+|+..+.+++ ...+.|.-.+.+.|++
T Consensus 235 i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~v~l~~~~ 314 (479)
T PRK07208 235 VVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPPPPEVRAAAAGLRYRDFITVGLLVKE 314 (479)
T ss_pred EEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCCCHHHHHHHhCCCcceeEEEEEEecC
Confidence 457899999999988774 32 23432 23479999999999988776 2345677778889988
Q ss_pred CCC
Q 044014 73 PRL 75 (127)
Q Consensus 73 pl~ 75 (127)
+..
T Consensus 315 ~~~ 317 (479)
T PRK07208 315 LNL 317 (479)
T ss_pred CCC
Confidence 754
No 20
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=89.59 E-value=0.54 Score=40.10 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=29.4
Q ss_pred eeeecCCceEEEE-EecCCc---eEEe---cCCCccCCCcEEEEccChHhHH
Q 044014 9 INIIPSNETLLDL-EPFNRM---WHLS---ENGESCGQFDVIIIARNGKCAN 53 (127)
Q Consensus 9 ~~~~~~~t~V~~l-~~~~~~---W~L~---~~g~~~G~FD~VVvA~Pa~QA~ 53 (127)
.|+ -+++|+++ .+.+++ |.+. ..+.....||.||||+|=.+..
T Consensus 140 A~v--l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 140 ANV--LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred CcE--ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 455 35789999 444443 6664 3344567799999999997654
No 21
>PLN02568 polyamine oxidase
Probab=89.39 E-value=0.99 Score=40.08 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=35.1
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHH
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANR 54 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~ 54 (127)
|=.+++|.++++.+++|.+. .+|+. -.+|.||+|+|......
T Consensus 257 I~ln~~V~~I~~~~~~v~V~~~dG~~-~~aD~VIvTvPl~vL~~ 299 (539)
T PLN02568 257 IQLGRKVTRIEWQDEPVKLHFADGST-MTADHVIVTVSLGVLKA 299 (539)
T ss_pred EEeCCeEEEEEEeCCeEEEEEcCCCE-EEcCEEEEcCCHHHHhh
Confidence 45689999999999999998 66644 35799999999998774
No 22
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=88.35 E-value=8.7 Score=32.83 Aligned_cols=62 Identities=6% Similarity=0.119 Sum_probs=42.6
Q ss_pred ecCCceEEEEEecCC--ceEEecCCC----ccCCCcEEEEccChHhHHHHH--------------hcccc-ceeeeeeec
Q 044014 12 IPSNETLLDLEPFNR--MWHLSENGE----SCGQFDVIIIARNGKCANRLL--------------RMQLS-SIWTLLAAS 70 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~--~W~L~~~g~----~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~-pcWalm~af 70 (127)
|=.++.|.+|..+++ .|.+..+|+ ..-.+|.||+++|+..+..|+ +.++. ....+.+++
T Consensus 249 i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~ 328 (492)
T TIGR02733 249 LLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGV 328 (492)
T ss_pred EeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEee
Confidence 457899999988875 365543221 123479999999999988877 12333 356788899
Q ss_pred cCC
Q 044014 71 EDP 73 (127)
Q Consensus 71 ~~p 73 (127)
++.
T Consensus 329 ~~~ 331 (492)
T TIGR02733 329 KRA 331 (492)
T ss_pred ccc
Confidence 873
No 23
>PLN02487 zeta-carotene desaturase
Probab=84.78 E-value=2.9 Score=37.60 Aligned_cols=64 Identities=13% Similarity=-0.114 Sum_probs=44.8
Q ss_pred CCceEEEEEecC--Cce----EEe-c-CCC-ccCCCcEEEEccChHhHHHHH--------------hccccceeeeeeec
Q 044014 14 SNETLLDLEPFN--RMW----HLS-E-NGE-SCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAAS 70 (127)
Q Consensus 14 ~~t~V~~l~~~~--~~W----~L~-~-~g~-~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af 70 (127)
.+++|.+++.++ +++ .+. . +++ ..-.+|+||+|+|.+.+.+|+ .....||-++-+.|
T Consensus 314 l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~ 393 (569)
T PLN02487 314 LRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRY 393 (569)
T ss_pred eCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEe
Confidence 567888888863 332 232 1 221 122369999999999999998 12357999999999
Q ss_pred cCCCCCC
Q 044014 71 EDPRLLG 77 (127)
Q Consensus 71 ~~pl~~~ 77 (127)
|.++..+
T Consensus 394 d~~v~~~ 400 (569)
T PLN02487 394 NGWVTEM 400 (569)
T ss_pred ccccccc
Confidence 9887655
No 24
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=83.14 E-value=2.9 Score=32.67 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=40.4
Q ss_pred cCCceEEEEEecCCceE-Ee-cCCCccCCCcEEEEccChHhHHHHH---h--ccccceeeeeeeccC
Q 044014 13 PSNETLLDLEPFNRMWH-LS-ENGESCGQFDVIIIARNGKCANRLL---R--MQLSSIWTLLAASED 72 (127)
Q Consensus 13 ~~~t~V~~l~~~~~~W~-L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll---~--~~~~pcWalm~af~~ 72 (127)
=.+|+|.+++.++++|. +. .+|+ .. +|.||+|. +..+..|+ . ..+.|+-..++.++.
T Consensus 165 ~~~~~V~~i~~~~~~v~gv~~~~g~-i~-ad~vV~a~-G~~s~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (358)
T PF01266_consen 165 RTGTEVTSIDVDGGRVTGVRTSDGE-IR-ADRVVLAA-GAWSPQLLPLLGLDLPLRPVRGQVLVLEP 228 (358)
T ss_dssp EESEEEEEEEEETTEEEEEEETTEE-EE-ECEEEE---GGGHHHHHHTTTTSSTEEEEEEEEEEEEG
T ss_pred cccccccchhhcccccccccccccc-cc-cceeEecc-cccceeeeecccccccccccceEEEEEcc
Confidence 35789999999999998 87 6665 44 49999987 45667766 2 256777777777764
No 25
>PLN03000 amine oxidase
Probab=80.18 E-value=3.5 Score=39.25 Aligned_cols=62 Identities=6% Similarity=-0.039 Sum_probs=45.9
Q ss_pred ecCCceEEEEEecCCceEEecCCCccCCCcEEEEccChHhHH----HHH------------hccccceeeeeeeccCCC
Q 044014 12 IPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCAN----RLL------------RMQLSSIWTLLAASEDPR 74 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~~~g~~~G~FD~VVvA~Pa~QA~----~Ll------------~~~~~pcWalm~af~~pl 74 (127)
|-.++.|++|++.++++.+..+++. -.+|.||+|+|..... .+. ++.|-..=-+.+.|+++.
T Consensus 393 I~Ln~~Vt~I~~~~dgV~V~~~~~~-~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~F 470 (881)
T PLN03000 393 ILYEKTVQTIRYGSNGVKVIAGNQV-YEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVF 470 (881)
T ss_pred cccCCcEEEEEECCCeEEEEECCcE-EEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence 5579999999999999999833322 3569999999999877 221 445556667778888863
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=80.07 E-value=6.8 Score=33.49 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=40.9
Q ss_pred ecCCceEEEEEecCCc-eEEe-cCCCccCCCcEEEEccChHhHHHHH---------------hcc-ccceeeeeeecc
Q 044014 12 IPSNETLLDLEPFNRM-WHLS-ENGESCGQFDVIIIARNGKCANRLL---------------RMQ-LSSIWTLLAASE 71 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~-W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll---------------~~~-~~pcWalm~af~ 71 (127)
|=.++.|.++..++++ |.+. .+|+.. .+|.||++++..++...| +.+ ..++..+.++++
T Consensus 236 i~~~~~V~~i~~~~~~~~~V~~~~g~~~-~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~ 312 (502)
T TIGR02734 236 LRLNAEVIRIETEGGRATAVHLADGERL-DADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLL 312 (502)
T ss_pred EEECCeEEEEEeeCCEEEEEEECCCCEE-ECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeec
Confidence 3467899999877654 6776 666544 579999999998887544 111 236666777777
No 27
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=80.06 E-value=2.4 Score=36.89 Aligned_cols=37 Identities=16% Similarity=0.463 Sum_probs=28.6
Q ss_pred ecCCceEEEEEecCCceEEe-cCCC-c--cCCCcEEEEccC
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGE-S--CGQFDVIIIARN 48 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~-~--~G~FD~VVvA~P 48 (127)
|-.+|+|.++++.+++|.+. .++. . ...||+||||+=
T Consensus 130 I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG 170 (461)
T PLN02172 130 VRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNG 170 (461)
T ss_pred EEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEecc
Confidence 56789999999999999997 3221 1 236999999984
No 28
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=79.34 E-value=1.6 Score=38.72 Aligned_cols=38 Identities=21% Similarity=0.492 Sum_probs=28.8
Q ss_pred eeecCCceEEEEEecC-----CceEEe--cCCC-ccCCCcEEEEcc
Q 044014 10 NIIPSNETLLDLEPFN-----RMWHLS--ENGE-SCGQFDVIIIAR 47 (127)
Q Consensus 10 ~~~~~~t~V~~l~~~~-----~~W~L~--~~g~-~~G~FD~VVvA~ 47 (127)
..|-.+|+|.++++.+ ++|.+. .+|+ ....||+||||+
T Consensus 101 ~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~Vvvat 146 (531)
T PF00743_consen 101 KHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVAT 146 (531)
T ss_dssp GGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE
T ss_pred ceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcC
Confidence 3467899999999865 479997 3343 245699999997
No 29
>PRK09897 hypothetical protein; Provisional
Probab=70.70 E-value=7.3 Score=34.81 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=29.5
Q ss_pred eeeecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccC
Q 044014 9 INIIPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARN 48 (127)
Q Consensus 9 ~~~~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~P 48 (127)
+++. .+++|..+++.+++|.|. .++...-.+|.||+|+=
T Consensus 124 V~v~-~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtG 163 (534)
T PRK09897 124 VAVY-ESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATG 163 (534)
T ss_pred EEEE-ECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCC
Confidence 4444 467899999999999997 55444456899999983
No 30
>PLN02676 polyamine oxidase
Probab=64.11 E-value=11 Score=32.94 Aligned_cols=62 Identities=6% Similarity=0.065 Sum_probs=43.0
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHH--HH--------------hccccceeeeeeeccCCC
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANR--LL--------------RMQLSSIWTLLAASEDPR 74 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~--Ll--------------~~~~~pcWalm~af~~pl 74 (127)
|=.++.|.+|+..+++-.+. .+|+.. .+|.||+|+|.....+ +. +..|...==+.+.|++|.
T Consensus 247 I~l~~~V~~I~~~~~gV~V~~~~G~~~-~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~F 325 (487)
T PLN02676 247 LKLNKVVREISYSKNGVTVKTEDGSVY-RAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKF 325 (487)
T ss_pred eecCCEeeEEEEcCCcEEEEECCCCEE-EeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCC
Confidence 45688999999999988887 666443 4599999999876543 11 233445555666677663
No 31
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=54.88 E-value=16 Score=30.31 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=28.7
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccC
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARN 48 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~P 48 (127)
+-.+++|.+++..+++|.+. .+|+. -.+|.||.|.=
T Consensus 120 v~~~~~v~~i~~~~~~~~v~~~~g~~-~~ad~vVgADG 156 (414)
T TIGR03219 120 ASFGKRATQIEEQAEEVQVLFTDGTE-YRCDLLIGADG 156 (414)
T ss_pred EEcCCEEEEEEecCCcEEEEEcCCCE-EEeeEEEECCC
Confidence 44689999999999999998 66653 45699999873
No 32
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=52.32 E-value=14 Score=30.80 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=23.9
Q ss_pred CCceEEEEEecC-CceEEe-cC---C-CccCCCcEEEEcc
Q 044014 14 SNETLLDLEPFN-RMWHLS-EN---G-ESCGQFDVIIIAR 47 (127)
Q Consensus 14 ~~t~V~~l~~~~-~~W~L~-~~---g-~~~G~FD~VVvA~ 47 (127)
.++.|.+++..+ ++|.|. .+ | ...-.+|.||+|+
T Consensus 298 ~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilAT 337 (341)
T PF13434_consen 298 PNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILAT 337 (341)
T ss_dssp TTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE--
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcC
Confidence 478999999999 599996 32 2 2234689999986
No 33
>PF14081 DUF4262: Domain of unknown function (DUF4262)
Probab=52.05 E-value=42 Score=23.90 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=38.1
Q ss_pred eeecCCceEEEEEecCC--ceEEe-cCCCccCCCcEEEEccChHhHHHHH
Q 044014 10 NIIPSNETLLDLEPFNR--MWHLS-ENGESCGQFDVIIIARNGKCANRLL 56 (127)
Q Consensus 10 ~~~~~~t~V~~l~~~~~--~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll 56 (127)
||.-.+..|..+..+++ +|.-+ +-...+|.-+.+|+..|++.|..||
T Consensus 1 ~I~~~Gw~v~~V~~~~~~~~faYTvGl~~~~g~PEliv~GL~~~~a~~lL 50 (125)
T PF14081_consen 1 DIRRHGWAVQYVFPDDEDPGFAYTVGLWHEHGHPELIVFGLPPETAHSLL 50 (125)
T ss_pred ChhhcCcEEEEECCCCCCCCceEecCCcccCCCCCEEEECCCHHHHHHHH
Confidence 34556788888888864 38887 6556788889999999999999999
No 34
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=50.01 E-value=27 Score=28.68 Aligned_cols=58 Identities=22% Similarity=0.337 Sum_probs=39.6
Q ss_pred cCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH---hccccceeeeeeeccC
Q 044014 13 PSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL---RMQLSSIWTLLAASED 72 (127)
Q Consensus 13 ~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll---~~~~~pcWalm~af~~ 72 (127)
=.+|.|.+++.++++|.+. .+|... ..|.||+|.-+- +..|+ ...+.|+.--++.++.
T Consensus 152 ~~~~~V~~i~~~~~~~~v~t~~g~~~-~a~~vV~a~G~~-~~~l~~~~~~pi~p~rg~~~~~~~ 213 (381)
T TIGR03197 152 HFNTEITSLERDGEGWQLLDANGEVI-AASVVVLANGAQ-AGQLAQTAHLPLRPVRGQVSHLPA 213 (381)
T ss_pred EeCCEEEEEEEcCCeEEEEeCCCCEE-EcCEEEEcCCcc-cccccccccCCccccccceeeccC
Confidence 3578999999988899997 666433 359999997543 33343 4456777766666643
No 35
>PRK07588 hypothetical protein; Provisional
Probab=49.27 E-value=25 Score=28.79 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=28.9
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccCh
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNG 49 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa 49 (127)
|=.+++|.+++.++++|.+. .+|+. ..+|.||.|.=.
T Consensus 119 i~~~~~v~~i~~~~~~v~v~~~~g~~-~~~d~vIgADG~ 156 (391)
T PRK07588 119 TIFDDSIATIDEHRDGVRVTFERGTP-RDFDLVIGADGL 156 (391)
T ss_pred EEeCCEEeEEEECCCeEEEEECCCCE-EEeCEEEECCCC
Confidence 34588999999999999997 66754 367999988743
No 36
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.71 E-value=21 Score=31.40 Aligned_cols=36 Identities=19% Similarity=0.555 Sum_probs=27.9
Q ss_pred ecCCceEEEEEecC-CceEEe--cCCC--ccCCCcEEEEcc
Q 044014 12 IPSNETLLDLEPFN-RMWHLS--ENGE--SCGQFDVIIIAR 47 (127)
Q Consensus 12 ~~~~t~V~~l~~~~-~~W~L~--~~g~--~~G~FD~VVvA~ 47 (127)
|-+++.|.+++... +.|.+. ++++ ..-.||+|||++
T Consensus 109 i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVct 149 (448)
T KOG1399|consen 109 INFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCT 149 (448)
T ss_pred eEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcc
Confidence 56788889999998 799996 3332 355799999987
No 37
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=45.04 E-value=31 Score=29.83 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=35.7
Q ss_pred eeecCCceEEEEEecC--CceEEe-cCCCccC--CCcEEEEccChHhHHHHHhccccceeeeeeeccCC
Q 044014 10 NIIPSNETLLDLEPFN--RMWHLS-ENGESCG--QFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDP 73 (127)
Q Consensus 10 ~~~~~~t~V~~l~~~~--~~W~L~-~~g~~~G--~FD~VVvA~Pa~QA~~Ll~~~~~pcWalm~af~~p 73 (127)
.-|+.++.|..+.++. +.|.|+ ++| ..+ .+|.||+|+=. +....-|-+.-+..|..+
T Consensus 99 ~~i~~~~~v~~~~~~~~~~~w~V~~~~~-~~~~~~a~~vV~ATG~------~~~P~iP~~~G~~~f~g~ 160 (443)
T COG2072 99 FQIRFNTRVEVADWDEDTKRWTVTTSDG-GTGELTADFVVVATGH------LSEPYIPDFAGLDEFKGR 160 (443)
T ss_pred eEEEcccceEEEEecCCCCeEEEEEcCC-CeeeEecCEEEEeecC------CCCCCCCCCCCccCCCce
Confidence 3466777777766665 589998 444 333 38999999743 333444555555555544
No 38
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=43.44 E-value=67 Score=25.15 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=40.0
Q ss_pred CCceEEEEEecCCceE-Ee-cCCCccCCCcEEEEccChHhHHHHHhccccceeeeeeeccCC
Q 044014 14 SNETLLDLEPFNRMWH-LS-ENGESCGQFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDP 73 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~-L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll~~~~~pcWalm~af~~p 73 (127)
.+|.|.+++..+++|. +. .+| . -.+|.||+|+-+ .+..|+...+.|+..-++.|+.+
T Consensus 156 ~~~~v~~i~~~~~~~~~v~~~~g-~-~~a~~vV~a~G~-~~~~l~~~~~~~~~g~~~~~~~~ 214 (337)
T TIGR02352 156 EHTEVQHIEIRGEKVTAIVTPSG-D-VQADQVVLAAGA-WAGELLPLPLRPVRGQPLRLEAP 214 (337)
T ss_pred ccceEEEEEeeCCEEEEEEcCCC-E-EECCEEEEcCCh-hhhhcccCCccccCceEEEeecc
Confidence 6789999999888775 45 444 3 346999998764 55556655677888777777543
No 39
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=42.92 E-value=59 Score=28.99 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=48.1
Q ss_pred eeecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH--------------hccccceeeeeeeccCCC
Q 044014 10 NIIPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAASEDPR 74 (127)
Q Consensus 10 ~~~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af~~pl 74 (127)
+.|-=++.|.+|.+++++=.++ .+.+..-. |.||+|+|..-+..+- ...|.+|==..+.|+.|.
T Consensus 221 ~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~a-d~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpF 299 (450)
T COG1231 221 TRILLNEPVRRIDQDGDGVTVTADDVGQYVA-DYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPF 299 (450)
T ss_pred ceEEecCceeeEEEcCCeEEEEeCCcceEEe-cEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCchh
Confidence 3444568999999999999998 55233333 8999999988766654 445777777888898886
Q ss_pred C
Q 044014 75 L 75 (127)
Q Consensus 75 ~ 75 (127)
-
T Consensus 300 W 300 (450)
T COG1231 300 W 300 (450)
T ss_pred h
Confidence 5
No 40
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=42.59 E-value=44 Score=25.63 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=27.7
Q ss_pred eeeecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccC
Q 044014 9 INIIPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARN 48 (127)
Q Consensus 9 ~~~~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~P 48 (127)
++++- ++|.++++.+++|.+. .+|+. -.||.||+|+=
T Consensus 72 v~~~~--~~v~~v~~~~~~~~v~~~~~~~-~~~d~liiAtG 109 (300)
T TIGR01292 72 AEIIY--EEVIKVDLSDRPFKVKTGDGKE-YTAKAVIIATG 109 (300)
T ss_pred CeEEE--EEEEEEEecCCeeEEEeCCCCE-EEeCEEEECCC
Confidence 45554 6889999988889987 55543 36799999983
No 41
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=41.85 E-value=35 Score=30.71 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=35.3
Q ss_pred CCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH---hccccceeeeeeecc
Q 044014 14 SNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL---RMQLSSIWTLLAASE 71 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll---~~~~~pcWalm~af~ 71 (127)
.+|.|.++++.+++|.+. .+|. .-.+|.||+|.-+- +..|+ ...+.|+---++.++
T Consensus 426 ~~~~V~~i~~~~~~~~v~t~~g~-~~~ad~VV~A~G~~-s~~l~~~~~lpl~p~RGqv~~~~ 485 (662)
T PRK01747 426 FGHEVARLEREDDGWQLDFAGGT-LASAPVVVLANGHD-AARFAQTAHLPLYSVRGQVSHLP 485 (662)
T ss_pred eCCEeeEEEEeCCEEEEEECCCc-EEECCEEEECCCCC-ccccccccCCCcccccceEEeec
Confidence 467899999988899987 4443 23469999987543 33443 233445544444443
No 42
>PLN02976 amine oxidase
Probab=39.07 E-value=47 Score=34.16 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=32.0
Q ss_pred ecCCceEEEEEec----------CCceEEe-cCCCccCCCcEEEEccChHhHH
Q 044014 12 IPSNETLLDLEPF----------NRMWHLS-ENGESCGQFDVIIIARNGKCAN 53 (127)
Q Consensus 12 ~~~~t~V~~l~~~----------~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~ 53 (127)
|=.++.|.+|.+. ++++.+. .+|+.+ .+|+||||+|.....
T Consensus 948 IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetf-tADaVIVTVPLGVLK 999 (1713)
T PLN02976 948 IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEF-LGDAVLITVPLGCLK 999 (1713)
T ss_pred eecCCeEEEEEecCCcccccccCCCcEEEEECCCCEE-EeceEEEeCCHHHhh
Confidence 5578999999984 4678887 677544 469999999988754
No 43
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=37.09 E-value=32 Score=24.26 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=17.4
Q ss_pred ccCCCcEEEEccChHhHHHHH
Q 044014 36 SCGQFDVIIIARNGKCANRLL 56 (127)
Q Consensus 36 ~~G~FD~VVvA~Pa~QA~~Ll 56 (127)
..+.||.|+|++++-|....+
T Consensus 64 ~~~~~D~viv~vKa~~~~~~l 84 (151)
T PF02558_consen 64 DAGPYDLVIVAVKAYQLEQAL 84 (151)
T ss_dssp HHSTESEEEE-SSGGGHHHHH
T ss_pred ccCCCcEEEEEecccchHHHH
Confidence 467899999999999988877
No 44
>PRK06847 hypothetical protein; Provisional
Probab=35.83 E-value=64 Score=26.00 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=29.9
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHh
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKC 51 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~Q 51 (127)
+-.+++|.+++.+++++.+. .+|+. -.+|.||+|.-.--
T Consensus 124 v~~~~~v~~i~~~~~~~~v~~~~g~~-~~ad~vI~AdG~~s 163 (375)
T PRK06847 124 VRLGTTVTAIEQDDDGVTVTFSDGTT-GRYDLVVGADGLYS 163 (375)
T ss_pred EEeCCEEEEEEEcCCEEEEEEcCCCE-EEcCEEEECcCCCc
Confidence 45688999999988889887 66643 45799999986533
No 45
>PRK06753 hypothetical protein; Provisional
Probab=35.31 E-value=63 Score=26.11 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=28.2
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccC
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARN 48 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~P 48 (127)
|=.+++|.+++.+++++.+. .+|+.. .+|.||.|.=
T Consensus 113 i~~~~~v~~i~~~~~~v~v~~~~g~~~-~~~~vigadG 149 (373)
T PRK06753 113 IFTGKEVTKIENETDKVTIHFADGESE-AFDLCIGADG 149 (373)
T ss_pred EEECCEEEEEEecCCcEEEEECCCCEE-ecCEEEECCC
Confidence 44688999999999999997 666443 5688888874
No 46
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=34.14 E-value=54 Score=26.40 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=35.9
Q ss_pred CCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH---hccccceeeeeeecc
Q 044014 14 SNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL---RMQLSSIWTLLAASE 71 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll---~~~~~pcWalm~af~ 71 (127)
.+++|.++++.+++|.+. ++| . -.+|.||+|+-+ .+..|+ ...+.|.=.-++.++
T Consensus 168 ~~~~v~~i~~~~~~~~v~~~~g-~-~~a~~vV~A~G~-~~~~l~~~~~~~i~~~~~~~~~~~ 226 (376)
T PRK11259 168 FNEPVTAIEADGDGVTVTTADG-T-YEAKKLVVSAGA-WVKDLLPPLELPLTPVRQVLAWFQ 226 (376)
T ss_pred CCCEEEEEEeeCCeEEEEeCCC-E-EEeeEEEEecCc-chhhhcccccCCceEEEEEEEEEe
Confidence 478999999988889887 555 3 356999999975 344554 233444444444443
No 47
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=33.18 E-value=46 Score=28.66 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=22.8
Q ss_pred ecCCceEEEEEecCCc-eEEec-CCCccCCCcEEEEccCh
Q 044014 12 IPSNETLLDLEPFNRM-WHLSE-NGESCGQFDVIIIARNG 49 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~-W~L~~-~g~~~G~FD~VVvA~Pa 49 (127)
+=++++|.+++..+++ +.+.. ++ ..-.+|.||+|+=+
T Consensus 126 i~~~~~V~~i~~~~~~~f~v~~~~~-~~~~a~~vILAtGG 164 (409)
T PF03486_consen 126 IHFNTRVKSIEKKEDGVFGVKTKNG-GEYEADAVILATGG 164 (409)
T ss_dssp EE-S--EEEEEEETTEEEEEEETTT-EEEEESEEEE----
T ss_pred EEeCCEeeeeeecCCceeEeeccCc-ccccCCEEEEecCC
Confidence 4478899999998777 99974 44 34456999999743
No 48
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=32.13 E-value=71 Score=26.66 Aligned_cols=34 Identities=12% Similarity=0.333 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCceEEe-cC-CCcc-CCCcEEEEcc
Q 044014 14 SNETLLDLEPFNRMWHLS-EN-GESC-GQFDVIIIAR 47 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~L~-~~-g~~~-G~FD~VVvA~ 47 (127)
.+++|.+++..++...+. .+ ++.. -.||.||||+
T Consensus 63 ~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiAT 99 (427)
T TIGR03385 63 TNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSP 99 (427)
T ss_pred ecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECC
Confidence 367899998888777776 22 3232 2389999998
No 49
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=31.15 E-value=76 Score=26.11 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=31.1
Q ss_pred CCceEEEEEecCCceEEe-cCCCccCCCcEEEEccCh-HhHHHHH
Q 044014 14 SNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNG-KCANRLL 56 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa-~QA~~Ll 56 (127)
.+++|.+++.++++|.+. .+|+.. .+|.||.|.=. ...++++
T Consensus 131 ~~~~v~~i~~~~~~v~v~~~~g~~~-~a~~vVgAdG~~S~vR~~l 174 (405)
T PRK05714 131 ANARLEQMRRSGDDWLLTLADGRQL-RAPLVVAADGANSAVRRLA 174 (405)
T ss_pred cCCEEEEEEEcCCeEEEEECCCCEE-EeCEEEEecCCCchhHHhc
Confidence 578999999999999997 666544 45999998843 3455555
No 50
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=30.85 E-value=78 Score=25.66 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=26.6
Q ss_pred cCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccC
Q 044014 13 PSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARN 48 (127)
Q Consensus 13 ~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~P 48 (127)
=.+++|.+++..+++|.+. .+|+. -.+|.||.|.=
T Consensus 131 ~~~~~v~~i~~~~~~~~v~~~~g~~-~~a~~vI~AdG 166 (395)
T PRK05732 131 HCPARVANVERTQGSVRVTLDDGET-LTGRLLVAADG 166 (395)
T ss_pred EcCCEEEEEEEcCCeEEEEECCCCE-EEeCEEEEecC
Confidence 3578999999988999997 66643 35688888873
No 51
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=30.69 E-value=71 Score=25.82 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHh-HHHHH
Q 044014 14 SNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKC-ANRLL 56 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~Q-A~~Ll 56 (127)
.+++|.+++.+++++.+. .+|+ .-.+|.||.|....- ..+.+
T Consensus 125 ~~~~v~~i~~~~~~~~v~~~~g~-~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 125 CPARYKEIIRNQDYVRVTLDNGQ-QLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred cCCeEEEEEEcCCeEEEEECCCC-EEEeeEEEEecCCChHHHHHc
Confidence 468899999988899887 5564 345799999997543 34444
No 52
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=29.26 E-value=87 Score=25.64 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=30.7
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccCh-HhHHHHH
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNG-KCANRLL 56 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa-~QA~~Ll 56 (127)
+-.+++|.+++.+++++.+. .+|+.. ..|.||.|.=. ....+.+
T Consensus 130 i~~~~~v~~i~~~~~~v~v~~~~g~~~-~a~~vV~AdG~~S~vr~~~ 175 (392)
T PRK08773 130 LHCPARVVALEQDADRVRLRLDDGRRL-EAALAIAADGAASTLRELA 175 (392)
T ss_pred EEcCCeEEEEEecCCeEEEEECCCCEE-EeCEEEEecCCCchHHHhh
Confidence 34678999999999999987 666543 45899988833 2344444
No 53
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=29.08 E-value=76 Score=25.83 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=27.4
Q ss_pred cCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccCh
Q 044014 13 PSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNG 49 (127)
Q Consensus 13 ~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa 49 (127)
-.+++|.+++.++++|.+. .+|+. -.+|.||.|.=.
T Consensus 129 ~~~~~v~~i~~~~~~~~v~~~~g~~-~~a~~vI~AdG~ 165 (388)
T PRK07494 129 RFGDEAESVRPREDEVTVTLADGTT-LSARLVVGADGR 165 (388)
T ss_pred EECCeeEEEEEcCCeEEEEECCCCE-EEEeEEEEecCC
Confidence 4588999999999999997 66643 345888888754
No 54
>PRK07236 hypothetical protein; Provisional
Probab=28.87 E-value=98 Score=25.38 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=28.1
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEcc
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIAR 47 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~ 47 (127)
+-.+++|.+++.+++++.+. .+|+.. .+|.||.|.
T Consensus 115 i~~~~~v~~i~~~~~~v~v~~~~g~~~-~ad~vIgAD 150 (386)
T PRK07236 115 YHLGETLVGFEQDGDRVTARFADGRRE-TADLLVGAD 150 (386)
T ss_pred EEcCCEEEEEEecCCeEEEEECCCCEE-EeCEEEECC
Confidence 56789999999999999987 666544 469999984
No 55
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=28.71 E-value=52 Score=21.35 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=15.1
Q ss_pred cCCCcEEEEccChHhHHHHH
Q 044014 37 CGQFDVIIIARNGKCANRLL 56 (127)
Q Consensus 37 ~G~FD~VVvA~Pa~QA~~Ll 56 (127)
....|.||+++|+.+...++
T Consensus 59 ~~~advvilav~p~~~~~v~ 78 (96)
T PF03807_consen 59 AQEADVVILAVKPQQLPEVL 78 (96)
T ss_dssp HHHTSEEEE-S-GGGHHHHH
T ss_pred hccCCEEEEEECHHHHHHHH
Confidence 34579999999999998887
No 56
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=28.66 E-value=91 Score=25.38 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=30.4
Q ss_pred cCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccCh-HhHHHHH
Q 044014 13 PSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNG-KCANRLL 56 (127)
Q Consensus 13 ~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa-~QA~~Ll 56 (127)
-.+++|.+++.+++++.+. .+|+.. .+|.||.|.-. ....+.+
T Consensus 129 ~~~~~v~~i~~~~~~v~v~~~~g~~~-~ad~vI~AdG~~S~vr~~~ 173 (403)
T PRK07333 129 REATSVTDFETRDEGVTVTLSDGSVL-EARLLVAADGARSKLRELA 173 (403)
T ss_pred EcCCEEEEEEEcCCEEEEEECCCCEE-EeCEEEEcCCCChHHHHHc
Confidence 3578999999999999987 666543 46999998743 3344444
No 57
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=28.28 E-value=84 Score=25.31 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=26.2
Q ss_pred CCceEEEEEecCCceEEe-cCCCccCCCcEEEEccCh
Q 044014 14 SNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNG 49 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa 49 (127)
.+|+|.+++.++++|.+. .+| .. ..|.||+|+-+
T Consensus 164 ~~~~V~~i~~~~~~~~v~~~~~-~i-~a~~vV~aaG~ 198 (380)
T TIGR01377 164 DGTKVVEIEPTELLVTVKTTKG-SY-QANKLVVTAGA 198 (380)
T ss_pred CCCeEEEEEecCCeEEEEeCCC-EE-EeCEEEEecCc
Confidence 478899999988889887 544 32 35889999876
No 58
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=28.25 E-value=87 Score=26.17 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=25.1
Q ss_pred CCceEEEEEecCCceEEec--CCCcc-CCCcEEEEccC
Q 044014 14 SNETLLDLEPFNRMWHLSE--NGESC-GQFDVIIIARN 48 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~L~~--~g~~~-G~FD~VVvA~P 48 (127)
.++.|.+++.+++...+.. +|+.. -.||.||+|+=
T Consensus 75 ~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG 112 (444)
T PRK09564 75 TEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATG 112 (444)
T ss_pred ecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCC
Confidence 3678999988888887763 23332 34899999983
No 59
>PRK10262 thioredoxin reductase; Provisional
Probab=27.25 E-value=85 Score=25.03 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=21.7
Q ss_pred eEEEEEecCCceEEecCCCccCCCcEEEEcc
Q 044014 17 TLLDLEPFNRMWHLSENGESCGQFDVIIIAR 47 (127)
Q Consensus 17 ~V~~l~~~~~~W~L~~~g~~~G~FD~VVvA~ 47 (127)
+|.+++..++.|.+..+.... .||.||+|+
T Consensus 84 ~v~~v~~~~~~~~v~~~~~~~-~~d~vilAt 113 (321)
T PRK10262 84 HINKVDLQNRPFRLTGDSGEY-TCDALIIAT 113 (321)
T ss_pred EEEEEEecCCeEEEEecCCEE-EECEEEECC
Confidence 466788888889997322222 589999998
No 60
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=27.14 E-value=83 Score=28.35 Aligned_cols=64 Identities=11% Similarity=-0.007 Sum_probs=46.7
Q ss_pred CCceEEEEEecC-CceEEe---cCCCccCCCcEEEEccChHhHHHHH------------hccccceeeeeeeccCC-CCC
Q 044014 14 SNETLLDLEPFN-RMWHLS---ENGESCGQFDVIIIARNGKCANRLL------------RMQLSSIWTLLAASEDP-RLL 76 (127)
Q Consensus 14 ~~t~V~~l~~~~-~~W~L~---~~g~~~G~FD~VVvA~Pa~QA~~Ll------------~~~~~pcWalm~af~~p-l~~ 76 (127)
.+..++.+.... +.|.+. .++.....++.++.|.|+.-.+.|| ...+.|..+|-+.|+.+ ...
T Consensus 268 ~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~ 347 (491)
T KOG1276|consen 268 LGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDL 347 (491)
T ss_pred cccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccccchhhhhhhhcCCCCceEEEEEeccCccccc
Confidence 344455554444 459986 5666677788888999999888887 55788999999999886 444
Q ss_pred C
Q 044014 77 G 77 (127)
Q Consensus 77 ~ 77 (127)
+
T Consensus 348 p 348 (491)
T KOG1276|consen 348 P 348 (491)
T ss_pred c
Confidence 3
No 61
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=27.00 E-value=99 Score=26.20 Aligned_cols=33 Identities=9% Similarity=0.226 Sum_probs=24.3
Q ss_pred CceEEEEEecCCceEEe-cC-CCcc-CCCcEEEEcc
Q 044014 15 NETLLDLEPFNRMWHLS-EN-GESC-GQFDVIIIAR 47 (127)
Q Consensus 15 ~t~V~~l~~~~~~W~L~-~~-g~~~-G~FD~VVvA~ 47 (127)
+++|.+++.+++.-.+. .+ ++.. -.||.||||+
T Consensus 78 ~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAt 113 (438)
T PRK13512 78 YHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSP 113 (438)
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECC
Confidence 67899999998877776 32 2222 3689999998
No 62
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=26.35 E-value=87 Score=27.80 Aligned_cols=43 Identities=30% Similarity=0.463 Sum_probs=28.9
Q ss_pred cCCceEEEEEec-CCceEEe----cCCC-ccCCCcEEEEccChHhHHHHH
Q 044014 13 PSNETLLDLEPF-NRMWHLS----ENGE-SCGQFDVIIIARNGKCANRLL 56 (127)
Q Consensus 13 ~~~t~V~~l~~~-~~~W~L~----~~g~-~~G~FD~VVvA~Pa~QA~~Ll 56 (127)
=.++.|.++++. +++|.+. ..|+ ..-.+|.||++. +..+.+|+
T Consensus 203 ~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AA-GawS~~La 251 (497)
T PRK13339 203 KYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGA-GGGAIPLL 251 (497)
T ss_pred EeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECC-CcchHHHH
Confidence 367899999988 7789885 2231 112579888876 44556665
No 63
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=25.87 E-value=67 Score=29.06 Aligned_cols=49 Identities=33% Similarity=0.457 Sum_probs=38.4
Q ss_pred cccceee---eeeecCCceEEEEEecCCceEEe---cCCCccCCCcEEEEccChHhHHHHH
Q 044014 2 NILRHCI---INIIPSNETLLDLEPFNRMWHLS---ENGESCGQFDVIIIARNGKCANRLL 56 (127)
Q Consensus 2 ~~~~~~~---~~~~~~~t~V~~l~~~~~~W~L~---~~g~~~G~FD~VVvA~Pa~QA~~Ll 56 (127)
++||||| ---+|++..|+.|.+..+|=.|. .+| -+-|...++.++..|-
T Consensus 219 ~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G------~~riw~~~G~l~~tl~ 273 (524)
T KOG0273|consen 219 LVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDG------EARIWNKDGNLISTLG 273 (524)
T ss_pred hhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCc------EEEEEecCchhhhhhh
Confidence 5799999 56789999999999987766664 233 2577888999988876
No 64
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=25.59 E-value=1.6e+02 Score=17.83 Aligned_cols=40 Identities=8% Similarity=0.050 Sum_probs=28.4
Q ss_pred CceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH
Q 044014 15 NETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL 56 (127)
Q Consensus 15 ~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll 56 (127)
++.|.++.|. +..+. .....+..-|.|++..+..+..++.
T Consensus 27 ~~~i~~i~R~--~~~~~p~~~~~l~~gD~l~v~g~~~~i~~~~ 67 (71)
T PF02080_consen 27 GVRIVAIKRG--GEIIIPDGDTVLQAGDILIVVGDPEDIERFR 67 (71)
T ss_dssp TEEEEEEEET--EEEES--TT-BE-TTEEEEEEEEHHHHHHHH
T ss_pred CEEEEEEEEC--CEEECCCCCCEECCCCEEEEEECHHHHHHHH
Confidence 8889999877 44444 4455677779999999998877664
No 65
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=24.73 E-value=1.1e+02 Score=24.42 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=26.1
Q ss_pred CCceEEEEEecCCceEEe-cCCCccCCCcEEEEccC
Q 044014 14 SNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARN 48 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~P 48 (127)
.+++|.+++..+++|.+. .+|+. -.+|.||.|.-
T Consensus 126 ~~~~v~~i~~~~~~~~v~~~~g~~-~~~~~vi~adG 160 (385)
T TIGR01988 126 CPARVVELPRHSDHVELTLDDGQQ-LRARLLVGADG 160 (385)
T ss_pred cCCeEEEEEecCCeeEEEECCCCE-EEeeEEEEeCC
Confidence 478899999988899887 66654 45688888754
No 66
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=24.32 E-value=1.1e+02 Score=24.86 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=26.3
Q ss_pred CCceEEEEEecCCceEEe-cCCCccCCCcEEEEccCh
Q 044014 14 SNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNG 49 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa 49 (127)
.+++|.+++..+++|.+. .+|+.. .+|.||.|.=.
T Consensus 132 ~~~~v~~i~~~~~~~~v~~~~g~~~-~a~~vI~AdG~ 167 (391)
T PRK08020 132 CPASLQALQRDDDGWELTLADGEEI-QAKLVIGADGA 167 (391)
T ss_pred cCCeeEEEEEcCCeEEEEECCCCEE-EeCEEEEeCCC
Confidence 478899999888899997 666443 35888888743
No 67
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=23.94 E-value=1.1e+02 Score=26.98 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=28.8
Q ss_pred cCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChH
Q 044014 13 PSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGK 50 (127)
Q Consensus 13 ~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~ 50 (127)
-++++|.++++++.+-.|+ .+|+.. ..|.||||+=+.
T Consensus 129 ~~~~~v~~v~~~~~~f~l~t~~g~~i-~~d~lilAtGG~ 166 (408)
T COG2081 129 RTRSRVSSVEKDDSGFRLDTSSGETV-KCDSLILATGGK 166 (408)
T ss_pred EecceEEeEEecCceEEEEcCCCCEE-EccEEEEecCCc
Confidence 3578999999999999998 666533 349999998543
No 68
>PRK09126 hypothetical protein; Provisional
Probab=23.89 E-value=1.3e+02 Score=24.52 Aligned_cols=37 Identities=8% Similarity=0.109 Sum_probs=28.1
Q ss_pred ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccCh
Q 044014 12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNG 49 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa 49 (127)
|-.+++|.+++.+++++.+. .+|+. -..|.||.|.-.
T Consensus 128 i~~~~~v~~~~~~~~~~~v~~~~g~~-~~a~~vI~AdG~ 165 (392)
T PRK09126 128 LLTGTRVTAVRTDDDGAQVTLANGRR-LTARLLVAADSR 165 (392)
T ss_pred EEcCCeEEEEEEcCCeEEEEEcCCCE-EEeCEEEEeCCC
Confidence 34688999999988888887 66654 345888888854
No 69
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=23.81 E-value=1.2e+02 Score=24.88 Aligned_cols=35 Identities=9% Similarity=-0.002 Sum_probs=26.8
Q ss_pred cCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccCh
Q 044014 13 PSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNG 49 (127)
Q Consensus 13 ~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa 49 (127)
-.++.|.+++..+++|.+. .+| . -.+|.||+|..+
T Consensus 167 ~~~~~V~~i~~~~~~~~V~~~~g-~-i~ad~vV~A~G~ 202 (393)
T PRK11728 167 RLGAEVTALDEHANGVVVRTTQG-E-YEARTLINCAGL 202 (393)
T ss_pred EcCCEEEEEEecCCeEEEEECCC-E-EEeCEEEECCCc
Confidence 4578999999888889887 544 2 347999998875
No 70
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=23.48 E-value=1.3e+02 Score=25.33 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=27.8
Q ss_pred ecCCceEEEEEecCCceEEecCCCccCCCcEEEEccCh
Q 044014 12 IPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNG 49 (127)
Q Consensus 12 ~~~~t~V~~l~~~~~~W~L~~~g~~~G~FD~VVvA~Pa 49 (127)
+-.++.|.++++.++.|.+..+++.. .+|.||+|+.+
T Consensus 122 i~~~~~V~~i~~~~~~~~v~~~~~~i-~ad~VIlAtG~ 158 (400)
T TIGR00275 122 ILTNSKVKSIKKDDNGFGVETSGGEY-EADKVILATGG 158 (400)
T ss_pred EEeCCEEEEEEecCCeEEEEECCcEE-EcCEEEECCCC
Confidence 34578999998888889887434333 46999999976
No 71
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=22.80 E-value=75 Score=24.69 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=17.6
Q ss_pred cCCCcEEEEccChHhHHHHH
Q 044014 37 CGQFDVIIIARNGKCANRLL 56 (127)
Q Consensus 37 ~G~FD~VVvA~Pa~QA~~Ll 56 (127)
.+.||.|||++++.|....+
T Consensus 57 ~~~~D~iiv~vKs~~~~~~l 76 (293)
T TIGR00745 57 LPPADLVIITVKAYQTEEAA 76 (293)
T ss_pred cCCCCEEEEeccchhHHHHH
Confidence 56899999999999977766
No 72
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=22.48 E-value=1.2e+02 Score=24.81 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=28.3
Q ss_pred eeeecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccCh
Q 044014 9 INIIPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNG 49 (127)
Q Consensus 9 ~~~~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa 49 (127)
|+++ .+++|.+++.+++++.+. .+|+. -.+|.||+++-.
T Consensus 198 V~i~-~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~vI~a~G~ 237 (377)
T PRK04965 198 VHLL-LKSQLQGLEKTDSGIRATLDSGRS-IEVDAVIAAAGL 237 (377)
T ss_pred CEEE-ECCeEEEEEccCCEEEEEEcCCcE-EECCEEEECcCC
Confidence 4444 367899999888888887 66644 457999999643
No 73
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=21.14 E-value=1.4e+02 Score=25.93 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=27.2
Q ss_pred CCceEEEEEecCCceEEe-cCCCccCCCcEEEEccCh
Q 044014 14 SNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNG 49 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa 49 (127)
.+++|.++.+.++.|.+. .+|+. -.+|.||+|+=+
T Consensus 285 ~~~~V~~I~~~~~~~~V~~~~g~~-i~a~~vViAtG~ 320 (517)
T PRK15317 285 NLQRASKLEPAAGLIEVELANGAV-LKAKTVILATGA 320 (517)
T ss_pred cCCEEEEEEecCCeEEEEECCCCE-EEcCEEEECCCC
Confidence 578999999988899997 55543 347999999843
No 74
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=20.91 E-value=1.6e+02 Score=24.30 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=25.7
Q ss_pred CCceEEEEEecCCceEEe-cCC----CccCCCcEEEEccChH
Q 044014 14 SNETLLDLEPFNRMWHLS-ENG----ESCGQFDVIIIARNGK 50 (127)
Q Consensus 14 ~~t~V~~l~~~~~~W~L~-~~g----~~~G~FD~VVvA~Pa~ 50 (127)
.+|+|.+++..+++|.+. .++ +..-.+|.||+|.-+-
T Consensus 216 ~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 216 YGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred cCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence 567899999888888874 222 1123579999998653
No 75
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=20.51 E-value=62 Score=26.19 Aligned_cols=21 Identities=10% Similarity=0.108 Sum_probs=17.1
Q ss_pred ccCCCcEEEEccChHhHHHHH
Q 044014 36 SCGQFDVIIIARNGKCANRLL 56 (127)
Q Consensus 36 ~~G~FD~VVvA~Pa~QA~~Ll 56 (127)
..++||.||+|+|..|...++
T Consensus 69 ~~~~~D~vilavK~~~~~~~~ 89 (313)
T PRK06249 69 DMPPCDWVLVGLKTTANALLA 89 (313)
T ss_pred hcCCCCEEEEEecCCChHhHH
Confidence 357899999999999876555
Done!