BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044015
         (478 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J0A|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe
 pdb|2J0B|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe In
           Complex With Udp And Manganese
          Length = 280

 Score = 33.9 bits (76), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 188 VRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNS----------ESVEQDVIHSYTM 237
           +RWF   DDD     + L+ +L  +  ++  Y+G  S          +S ++  +  +  
Sbjct: 94  LRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSKQRTKLVRFWF 153

Query: 238 AYGGGGFAISYPLAAELV 255
           A GG GF I+  LA ++V
Sbjct: 154 ATGGAGFCINRQLALKMV 171


>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
           Thermophilus Hb8 In Apo-form
 pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
           Thermophilus Hb8 In Apo-form
 pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 In Holo-Form
 pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 In Holo-Form
 pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 With 4-Methylpentanoate
 pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 With 4-Methylpentanoate
 pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
           Intermediate
 pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
           Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
           Intermediate
          Length = 324

 Score = 29.3 bits (64), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 305 LAAHPLSPIVSLHHLDYVLPIFPNM-SQIESLKKLMGAYKTDP 346
           +AAH L P+  +   DY+ P F  + SQ+  L+   G   T P
Sbjct: 70  MAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAP 112


>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
           Of Arthrobacter Globiformis In Complex With
           Tetrahydrofolate
          Length = 827

 Score = 28.9 bits (63), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 7/36 (19%)

Query: 166 GTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFF 201
           G RSAI +AR+ ++TF+LG         G+ DT +F
Sbjct: 545 GVRSAITVARLSEDTFQLGAN-------GNIDTAYF 573


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,193,442
Number of Sequences: 62578
Number of extensions: 644808
Number of successful extensions: 1471
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1469
Number of HSP's gapped (non-prelim): 6
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)