Query 044015
Match_columns 478
No_of_seqs 311 out of 919
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 10:38:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03153 hypothetical protein; 100.0 6.2E-99 1E-103 788.7 39.5 447 26-478 30-501 (537)
2 PF04646 DUF604: Protein of un 100.0 1.9E-70 4.2E-75 531.1 22.8 247 229-478 1-248 (255)
3 KOG2246 Galactosyltransferases 100.0 3.4E-44 7.5E-49 370.1 14.0 349 25-395 2-363 (364)
4 PF02434 Fringe: Fringe-like; 100.0 2.6E-33 5.5E-38 277.2 9.9 211 96-321 2-233 (252)
5 KOG3708 Uncharacterized conser 99.3 3.2E-12 6.8E-17 134.1 8.2 170 96-289 22-192 (681)
6 KOG2287 Galactosyltransferases 99.1 5.4E-09 1.2E-13 108.6 17.4 141 171-323 172-329 (349)
7 PLN03193 beta-1,3-galactosyltr 99.1 2E-09 4.3E-14 112.5 14.1 116 173-294 224-355 (408)
8 PF01762 Galactosyl_T: Galacto 99.0 6.2E-09 1.4E-13 98.9 12.7 114 171-290 65-195 (195)
9 PLN03133 beta-1,3-galactosyltr 98.9 6.1E-08 1.3E-12 106.8 16.6 103 183-287 471-590 (636)
10 PTZ00210 UDP-GlcNAc-dependent 98.5 8.8E-07 1.9E-11 91.8 11.9 146 172-323 185-347 (382)
11 KOG2288 Galactosyltransferases 97.9 3.3E-05 7E-10 76.3 8.6 114 173-293 96-224 (274)
12 cd04186 GT_2_like_c Subfamily 93.6 0.3 6.4E-06 43.0 7.5 84 187-290 74-158 (166)
13 PF13506 Glyco_transf_21: Glyc 92.2 0.78 1.7E-05 43.1 8.7 99 186-290 30-147 (175)
14 cd02520 Glucosylceramide_synth 92.2 0.37 8E-06 45.0 6.4 85 186-289 85-169 (196)
15 PF13641 Glyco_tranf_2_3: Glyc 91.5 0.71 1.5E-05 43.6 7.7 105 176-289 77-202 (228)
16 cd02526 GT2_RfbF_like RfbF is 89.7 1.5 3.3E-05 41.5 8.2 99 187-290 75-197 (237)
17 PF05679 CHGN: Chondroitin N-a 89.0 0.32 6.9E-06 53.3 3.3 65 257-322 1-70 (499)
18 cd04185 GT_2_like_b Subfamily 85.6 2.3 5E-05 39.4 6.5 85 186-286 78-163 (202)
19 PF01755 Glyco_transf_25: Glyc 85.3 2.6 5.7E-05 39.6 6.9 81 175-258 76-189 (200)
20 cd06421 CESA_CelA_like CESA_Ce 84.7 1.9 4.1E-05 40.6 5.6 93 187-286 84-200 (234)
21 PF13632 Glyco_trans_2_3: Glyc 84.4 2.1 4.6E-05 39.5 5.7 93 190-288 1-115 (193)
22 cd06437 CESA_CaSu_A2 Cellulose 83.1 2.8 6E-05 39.9 6.1 95 186-287 86-203 (232)
23 cd06436 GlcNAc-1-P_transferase 82.8 2.6 5.7E-05 39.3 5.6 67 187-254 89-178 (191)
24 cd06434 GT2_HAS Hyaluronan syn 82.7 4.8 0.0001 38.0 7.5 27 187-213 77-103 (235)
25 TIGR01556 rhamnosyltran L-rham 82.4 3.5 7.5E-05 40.8 6.7 106 176-290 65-194 (281)
26 cd04192 GT_2_like_e Subfamily 81.9 4.6 0.0001 37.6 7.0 94 186-284 81-195 (229)
27 cd06532 Glyco_transf_25 Glycos 81.6 2.8 6.1E-05 37.1 5.1 46 175-259 73-118 (128)
28 cd06427 CESA_like_2 CESA_like_ 80.7 3 6.6E-05 40.1 5.4 94 187-287 84-202 (241)
29 cd06435 CESA_NdvC_like NdvC_li 80.3 9.1 0.0002 36.2 8.5 95 186-287 83-199 (236)
30 cd06420 GT2_Chondriotin_Pol_N 78.2 9.1 0.0002 34.4 7.5 92 186-286 78-169 (182)
31 PRK11204 N-glycosyltransferase 78.2 4 8.6E-05 43.0 5.8 98 186-290 133-253 (420)
32 cd06438 EpsO_like EpsO protein 77.8 2.5 5.5E-05 38.8 3.7 39 185-223 79-117 (183)
33 cd04188 DPG_synthase DPG_synth 76.9 15 0.00033 34.3 8.8 101 188-294 83-205 (211)
34 PRK14583 hmsR N-glycosyltransf 75.7 4.9 0.00011 43.1 5.7 99 186-291 154-275 (444)
35 TIGR03469 HonB hopene-associat 75.1 7.1 0.00015 41.0 6.6 98 185-287 131-252 (384)
36 cd06439 CESA_like_1 CESA_like_ 72.9 8.9 0.00019 36.7 6.3 29 188-216 110-138 (251)
37 TIGR03472 HpnI hopanoid biosyn 72.8 10 0.00022 39.6 7.1 99 186-291 125-247 (373)
38 cd04196 GT_2_like_d Subfamily 72.6 15 0.00032 33.8 7.4 93 185-283 77-190 (214)
39 cd04195 GT2_AmsE_like GT2_AmsE 72.4 6.3 0.00014 36.2 4.9 95 186-287 79-191 (201)
40 cd02525 Succinoglycan_BP_ExoA 71.2 16 0.00035 34.4 7.5 94 187-286 81-197 (249)
41 cd02522 GT_2_like_a GT_2_like_ 71.2 12 0.00025 34.9 6.5 91 188-285 73-175 (221)
42 cd04184 GT2_RfbC_Mx_like Myxoc 69.1 12 0.00026 34.3 6.0 98 187-290 83-194 (202)
43 cd06433 GT_2_WfgS_like WfgS an 65.8 19 0.00041 32.4 6.5 94 187-286 75-183 (202)
44 cd06442 DPM1_like DPM1_like re 65.4 23 0.0005 33.0 7.2 36 188-223 79-115 (224)
45 COG1215 Glycosyltransferases, 61.6 18 0.00039 37.8 6.2 99 186-291 136-259 (439)
46 cd06913 beta3GnTL1_like Beta 1 60.8 19 0.0004 33.9 5.7 38 186-223 83-120 (219)
47 cd04187 DPM1_like_bac Bacteria 59.1 23 0.0005 32.0 5.8 69 188-256 81-164 (181)
48 cd04191 Glucan_BSP_ModH Glucan 57.6 38 0.00083 33.7 7.5 104 186-290 94-224 (254)
49 KOG2246 Galactosyltransferases 56.9 14 0.0003 39.2 4.3 63 93-157 84-146 (364)
50 PLN02726 dolichyl-phosphate be 56.7 45 0.00098 32.1 7.7 99 187-291 93-212 (243)
51 cd04179 DPM_DPG-synthase_like 55.7 21 0.00046 32.0 4.9 37 188-224 80-117 (185)
52 cd06423 CESA_like CESA_like is 54.9 17 0.00036 31.3 3.9 26 187-212 78-103 (180)
53 cd00761 Glyco_tranf_GTA_type G 52.0 24 0.00052 29.4 4.4 54 187-257 77-130 (156)
54 cd02510 pp-GalNAc-T pp-GalNAc- 50.2 36 0.00079 33.9 6.1 26 187-212 83-108 (299)
55 PRK14716 bacteriophage N4 adso 48.2 32 0.00069 38.0 5.6 100 186-288 157-280 (504)
56 PF00535 Glycos_transf_2: Glyc 47.4 22 0.00048 30.6 3.5 47 175-223 68-115 (169)
57 PTZ00260 dolichyl-phosphate be 42.5 1E+02 0.0022 31.8 8.1 99 187-291 162-286 (333)
58 PRK10714 undecaprenyl phosphat 40.9 44 0.00096 34.4 5.1 70 187-256 90-174 (325)
59 TIGR03030 CelA cellulose synth 40.8 56 0.0012 37.6 6.3 100 177-286 220-347 (713)
60 COG1216 Predicted glycosyltran 40.3 83 0.0018 31.7 6.9 109 176-292 76-215 (305)
61 PRK11234 nfrB bacteriophage N4 38.3 1.5E+02 0.0032 34.5 9.1 101 187-290 155-279 (727)
62 PLN03181 glycosyltransferase; 36.1 3.3E+02 0.0072 29.7 10.6 40 174-214 186-225 (453)
63 PF02485 Branch: Core-2/I-Bran 34.3 3E+02 0.0064 26.6 9.5 149 102-256 1-172 (244)
64 PF05637 Glyco_transf_34: gala 31.5 50 0.0011 32.7 3.6 36 174-210 64-101 (239)
65 TIGR03111 glyc2_xrt_Gpos1 puta 31.0 1.2E+02 0.0026 32.5 6.6 37 176-214 122-158 (439)
66 PRK05454 glucosyltransferase M 28.9 1.9E+02 0.004 33.4 8.0 36 177-212 210-245 (691)
67 cd04190 Chitin_synth_C C-termi 22.1 1.4E+02 0.003 28.9 4.7 29 185-213 71-99 (244)
68 PLN03183 acetylglucosaminyltra 21.7 1.1E+03 0.023 25.8 18.8 153 98-257 76-273 (421)
69 PF13704 Glyco_tranf_2_4: Glyc 20.9 1.4E+02 0.003 24.4 3.8 25 185-209 69-97 (97)
No 1
>PLN03153 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-99 Score=788.67 Aligned_cols=447 Identities=40% Similarity=0.733 Sum_probs=387.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc------CcccCCCCCC--CCC----Cccc------cccccccccccc
Q 044015 26 KPMDIVSLFMKSALFIFTVISIYLLFFYALSNK------LHYSTSNCPQ--SQC----DTNR------LLSSQKKLLTRQ 87 (478)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~----~~~~------~~~~~~~~~~~~ 87 (478)
-.+-++++|+..+++|+||++...+++...+.. +.--.+.|+. ..+ .+.. +++..... +-.
T Consensus 30 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 108 (537)
T PLN03153 30 AVVAVAALLLSTTAWLSLVFSGTTARCWHRFKDWEGSPDTLLWNKRYHHPIVTPLPPPPSSPSLPSSLLLDHFRNR-SLS 108 (537)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccccccCccccCccccccccccccccccccccccccccc-ccC
Confidence 377788888888888888888888877632221 0000223411 111 0001 11111110 000
Q ss_pred -cccCCCCCCCCCCeEEEEEecCccchHhHHHHHHHhccCCCcceEEEeecCCCC-CCCCCCCCeeeCCCCCcccccccc
Q 044015 88 -NTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNK-TWPATSPPYKVSQDTSRFQYTSWY 165 (478)
Q Consensus 88 -~~~~~~~~~~~~s~IvFgI~Ts~k~~~~R~~~ik~Ww~~~~~r~~vfld~~~~~-~~~~~lP~v~is~~~s~~~yt~~~ 165 (478)
........+++++||+|||+|++++|++|++||+.||+++.|||+||+|+.+.+ .++..+|+++|+.++++|+|+++.
T Consensus 109 ~~~~~~~~~~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~~~~~~~~P~i~is~d~s~f~y~~~~ 188 (537)
T PLN03153 109 EIERLKVEAELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSPEEGDDSLPPIMVSEDTSRFRYTNPT 188 (537)
T ss_pred CCCCcccCCCCccccEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCCCCCcCCCCCEEeCCCcccccccCCC
Confidence 011234467999999999999999999999999999999999999999998744 477899999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccce
Q 044015 166 GTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFA 245 (478)
Q Consensus 166 g~~s~~Ri~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~v 245 (478)
|+++++||++|+.|+++.+.|++||||++||||||+++||+++|++|||++++|||.++|...++..+++.||+|||||+
T Consensus 189 Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~ 268 (537)
T PLN03153 189 GHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIA 268 (537)
T ss_pred CcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEE
Confidence 99999999999999999889999999999999999999999999999999999999999999888888888999999999
Q ss_pred ecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCCcCcCcCCCCcCcccCCCCCCccccccCCCCCCC
Q 044015 246 ISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPI 325 (478)
Q Consensus 246 LSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gfhQ~D~~gd~~G~~~~~~~~P~lSlHH~~~~~~~ 325 (478)
||++||++|.+.+++|.++|+..++||.+|++||+++||+||+++||||+|++||++|++++|+..|+||||||+.++|+
T Consensus 269 LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les~p~~P~vSlHH~~~~~p~ 348 (537)
T PLN03153 269 ISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGNAHGLLSSHPIAPFVSIHHVEAVDPF 348 (537)
T ss_pred EcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCCCcchHhhcCCCCCceeeeeccccccc
Confidence 99999999999999999888877899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCCceeeeeeeccCCceEEEEEeeeEEEEeCCCcchhhHHHHHhhhhcccCCCC-CCccc
Q 044015 326 FPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSD-EPFTF 404 (478)
Q Consensus 326 fp~~~~~~~l~~l~~a~~~~~~~~~qr~~~~D~~~~w~~~~s~GySi~~y~~~~~~~dl~~~e~Tf~~w~~~~~-~~~~f 404 (478)
||+|++.++|+++.+|+++|++++|||+||||..++|+|+|||||||++|++++.+.||+++|+||.+|++..+ .+|+|
T Consensus 349 fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fsvSwGysV~~y~~~~~~~dl~~~e~Tf~~w~~~~~~~~f~f 428 (537)
T PLN03153 349 YPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFSISLGYVVQVFPSIVLPRDLERSELTYSAWNKISHRNEFDL 428 (537)
T ss_pred cCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEEEeccEEEEEecCCCCchhhhhhHhhhhhhcccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987766 68999
Q ss_pred cCCCCCCCCCCCCeEEEEeeeeeeecCCCcEEEEEEeeccCCC----CCCCCcCCCCCCCccEEEEEecCCCCCCCCC
Q 044015 405 NTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHD----KDCDNKAYAPALAVKRFQVSASTLDPDHWKL 478 (478)
Q Consensus 405 ~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~Y~r~~~~~~----~~c~~~~~~~~~~~~~i~v~~~~~~~~~w~~ 478 (478)
||||+.+++|++|.+|||++++. ++++|+|+|+|+..++. +.|.+. .+++..|++|+|++ +++|+.|++
T Consensus 429 ntr~~~r~~c~~p~~f~l~~~~~---~~~~~~~~Y~r~~~~~~~~~~~~C~~~-~~~~~~v~~i~V~~-~~~~~~w~~ 501 (537)
T PLN03153 429 DTRDPIKSVCKKPILFFLKDVGR---EGNATLGTYSRARMKDDLKRKVFCFPR-SLPLPYVEKIQVLG-FPLSKNWHL 501 (537)
T ss_pred cCCCCCCCcccCceEEEeeeccc---cCCeeEEEEEEeccccccccccccccc-CCChhhceEEEEec-CCCccchhh
Confidence 99999999999999999999975 57899999999965432 567765 46888999999999 888999974
No 2
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=100.00 E-value=1.9e-70 Score=531.08 Aligned_cols=247 Identities=53% Similarity=0.991 Sum_probs=238.1
Q ss_pred ccccccccccccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCCcCcCcCCCCcCcccCC
Q 044015 229 QDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAH 308 (478)
Q Consensus 229 ~~~~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gfhQ~D~~gd~~G~~~~~ 308 (478)
||+.|+|+||||||||+||+||+++|++++|+|+++|+..+|||.+|..||+++||+||.++||||+|++||++|++++|
T Consensus 1 Qn~~fs~~MAfGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~Di~Gd~~G~~~a~ 80 (255)
T PF04646_consen 1 QNVMFSYNMAFGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMDIRGDPSGFLEAH 80 (255)
T ss_pred CCceeeccccccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEeeccCcceeeecC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCCCCCccHHHHHHHHHHHhhcCCCCceeeeeeeccCCceEEEEEeeeEEEEeCCCcchhhHHHHH
Q 044015 309 PLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAY 388 (478)
Q Consensus 309 ~~~P~lSlHH~~~~~~~fp~~~~~~~l~~l~~a~~~~~~~~~qr~~~~D~~~~w~~~~s~GySi~~y~~~~~~~dl~~~e 388 (478)
+..|++|||||+.++|+||+|++.+||++|++|+++|+++++||+||||+.++|+|+||||||||+|++.++++||++++
T Consensus 81 ~~~pl~SlHH~~~~~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~~~l~~~dLe~~~ 160 (255)
T PF04646_consen 81 PLAPLVSLHHWDSVDPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYRGILTPRDLETPE 160 (255)
T ss_pred CCCceeeeeehhhccccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEECCCCChHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCC-CCccccCCCCCCCCCCCCeEEEEeeeeeeecCCCcEEEEEEeeccCCCCCCCCcCCCCCCCccEEEEE
Q 044015 389 LTFKSWRSWSD-EPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVS 467 (478)
Q Consensus 389 ~Tf~~w~~~~~-~~~~f~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~Y~r~~~~~~~~c~~~~~~~~~~~~~i~v~ 467 (478)
+||.+|+++++ ++|+|||||+++++|++|.+|||+++..+ .++|+++++|+|...++ ++|.|++.+|+.+|++|+|+
T Consensus 161 rTF~~W~~~~~~~~f~FnTRp~~~dpC~rP~vffL~~v~~~-~~~~~t~s~Y~r~~~~~-~~C~~~~~~p~~~v~~I~V~ 238 (255)
T PF04646_consen 161 RTFRTWYRRSDRTPFAFNTRPVPRDPCQRPTVFFLSSVRSD-SGSNQTVSSYVRHRVRN-PNCCWPMADPLSKVQRIRVL 238 (255)
T ss_pred HHhhcccCcCcCCceeccCCCCcCCCCCCCeEEEEeeeeec-CCCCeEEEEEEecccCC-CCCCCCCCCchhhceEEEEE
Confidence 99999999887 89999999999999999999999999984 36789999999998665 99999998899999999999
Q ss_pred ecCCCCCCCCC
Q 044015 468 ASTLDPDHWKL 478 (478)
Q Consensus 468 ~~~~~~~~w~~ 478 (478)
+ +++|+.|++
T Consensus 239 ~-k~~~~~w~~ 248 (255)
T PF04646_consen 239 K-KPDPDLWKK 248 (255)
T ss_pred c-ccCCccccc
Confidence 9 999999985
No 3
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-44 Score=370.14 Aligned_cols=349 Identities=35% Similarity=0.465 Sum_probs=268.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCc--ccCCCCCCCCCCccccccccccccccccccCCCCCCCCCCeE
Q 044015 25 IKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLH--YSTSNCPQSQCDTNRLLSSQKKLLTRQNTTLYNEPKTNVSHI 102 (478)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I 102 (478)
.+++...++...++++++++..+.+.+|....-... ..++ ..-+.......+.+. .. ........+++.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~-~~~~~~~~~~i~~~ 74 (364)
T KOG2246|consen 2 NLPSRFLSLDSSFLLLSFLIASFGMISYILFSYPLKSFISSL--FLLPHELHLLFPASI----HL-HSENLSLTTDILHL 74 (364)
T ss_pred CccchHHHHHHHHHHHHHHHHHHhhhheeEecccccccchhh--ccccccccccccccc----cc-cccccccccchhhh
Confidence 456667777777777777777777555554422211 0000 000000000000000 00 01233456788888
Q ss_pred EEE-EecCccchHhHHHHHHHhccCCCcceEEEeecCCCCCC------CCCCCCeeeCCCCCccc---cccccCcchHHH
Q 044015 103 VFG-IGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTW------PATSPPYKVSQDTSRFQ---YTSWYGTRSAIR 172 (478)
Q Consensus 103 vFg-I~Ts~k~~~~R~~~ik~Ww~~~~~r~~vfld~~~~~~~------~~~lP~v~is~~~s~~~---yt~~~g~~s~~R 172 (478)
+|| ++++...|..|..+|.-||.++.+++.++++... ++| ..-+|++ ++.++++++ |+.+.|.+..+|
T Consensus 75 ~~g~~~~s~~~~l~r~~~v~cwv~t~~~~~~~~~~~v~-~TW~~rc~~~~f~s~~-~s~~~~~f~~v~~~~~~g~~~~~~ 152 (364)
T KOG2246|consen 75 VFGIIASSIALWLSRSGRVLCWVLTSPMRHVTRADAVK-ETWLKRCDKGIFFSPT-LSKDDSRFPTVYYNLPDGYRSLWR 152 (364)
T ss_pred ccCCccccchhccCCCceEEEEEEecCcCceeehhhhh-cccccccCcceecCcc-CCCCCCcCceeeccCCcchHHHHH
Confidence 888 8888888888888888888777788888887653 222 1235666 777777887 888889999999
Q ss_pred HHHHHHHHH-HhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHH
Q 044015 173 IARIIKETF-RLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLA 251 (478)
Q Consensus 173 i~~ml~e~~-~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll 251 (478)
+.+++-+.+ ++..+++|||+++||||||+++||+++|++|||++|+|||..++.+.++. +++.+|.||.|++.+++++
T Consensus 153 ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~~~~~-y~~g~ag~~ls~aa~~~la 231 (364)
T KOG2246|consen 153 KTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSYFQNG-YSSGGAGYVLSFAALRRLA 231 (364)
T ss_pred HHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccccccccc-cccCCCCcceeHHHHHHHH
Confidence 988766655 47889999999999999999999999999999999999999999988775 4444555555555555555
Q ss_pred HHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCCcCcCcCCCCcCcccCCCCCCccccccCCCCCCCCCCccH
Q 044015 252 AELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQ 331 (478)
Q Consensus 252 ~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gfhQ~D~~gd~~G~~~~~~~~P~lSlHH~~~~~~~fp~~~~ 331 (478)
+++.+..+.|++++.+ +++|.+||+||+++||+++.+ ||.|.+|...|+..+++..|.+++||+.-+ +||++++
T Consensus 232 ~~l~~~~~~C~~~~~~-~~eD~~i~~Cl~~~GV~~~d~---~d~dg~~rf~~~~p~~~~~p~~s~~~~~~~--~fp~~~~ 305 (364)
T KOG2246|consen 232 ERLLNNEDKCPQRYPS-YGEDRRIGRCLAEVGVPATDE---RDEDGRGRFLPLLPAHPIAPLVSLHHLWLV--YFPNQNG 305 (364)
T ss_pred HHHhcchhhcccccCC-chhHHHHHHHHHHhCCCccCc---hhhhcccccCCCChhhccCCccccccceee--ecCCCch
Confidence 6666667889988776 789999999999999999998 999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHhhcCCCCceeeeeeeccCCceEEEEEeeeEEEEeCCCcchhhHHHHHhhhhccc
Q 044015 332 IESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWR 395 (478)
Q Consensus 332 ~~~l~~l~~a~~~~~~~~~qr~~~~D~~~~w~~~~s~GySi~~y~~~~~~~dl~~~e~Tf~~w~ 395 (478)
..++.+++.+...++. .+|+.+|||..+.|+++++|||.+++++.... ++.+||.+|+
T Consensus 306 ~~~~s~~~vsfh~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~~~ 363 (364)
T KOG2246|consen 306 SGCCSDLAVSFHYLSP-IEMQSFCYDIYRLRTFGVSWGYTVQIIRPNLS-----RPSRTFSSWN 363 (364)
T ss_pred hhHHHHhhHhhccCCH-HHHHHHhhhhhheeeccccccccccccccccc-----ccccccCCCC
Confidence 9999999999999999 99999999999999999999999999998777 7889999985
No 4
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=100.00 E-value=2.6e-33 Score=277.21 Aligned_cols=211 Identities=21% Similarity=0.323 Sum_probs=118.1
Q ss_pred CCCCCeEEEEEecCccchHhHHHHHHHhccCCC-cceEEEeecCCCCCCCCCCCCe----eeCCCCCccccccccCcchH
Q 044015 96 KTNVSHIVFGIGGSANTWDDRRHYCELWWKPGL-TRGFVWLDEKPNKTWPATSPPY----KVSQDTSRFQYTSWYGTRSA 170 (478)
Q Consensus 96 ~~~~s~IvFgI~Ts~k~~~~R~~~ik~Ww~~~~-~r~~vfld~~~~~~~~~~lP~v----~is~~~s~~~yt~~~g~~s~ 170 (478)
++++++|+|+|+|+.++|++|+++|+.||.+.. ...++|.|.++ ..+|.+ .+.++++. .++. . .
T Consensus 2 ~~~~~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d-----~~l~~~~~~~l~~~~~~~-~~~~--~---~ 70 (252)
T PF02434_consen 2 PVTLDDIFIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAED-----PSLPTVTGVHLVNPNCDA-GHCR--K---T 70 (252)
T ss_dssp ---GGGEEEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS-------HHHHHHHGGGEEE-----------------
T ss_pred CcccccEEEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCccc-----cccccccccccccCCCcc-hhhH--H---H
Confidence 588999999999999999999999988886543 33455777653 233433 12222221 1121 1 1
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccc----------ccccccccc
Q 044015 171 IRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDV----------IHSYTMAYG 240 (478)
Q Consensus 171 ~Ri~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~----------~~g~~fa~G 240 (478)
..+. |..+......+++|||+++|||||++++||+++|++|||++|+|||.++....... ..++.||+|
T Consensus 71 ~~~~-~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~~~~~~~f~~G 149 (252)
T PF02434_consen 71 LSCK-MAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKSKDSGFWFATG 149 (252)
T ss_dssp --HH-HHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------EE-G
T ss_pred HHHH-HHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccccCcCceEeeCC
Confidence 1122 21111111246889999999999999999999999999999999999986542211 235679999
Q ss_pred CccceecHHHHHHHHHhhhhh--hccccc-CCCchHHHHHHHHh-cCCceeecCCCcCcCcC--CCCcCcccCCCCCCcc
Q 044015 241 GGGFAISYPLAAELVRVLDGC--IDRYAS-FYGSDQKVQGCMAE-IGVPVTKELGFHQIDIR--GDPYGLLAAHPLSPIV 314 (478)
Q Consensus 241 GaG~vLSr~Ll~~L~~~~~~C--~~~~~~-~~~gD~~L~~Ci~~-lGV~LT~~~gfhQ~D~~--gd~~G~~~~~~~~P~l 314 (478)
||||||||+||++|.++...| ...... ..++|+.||.||+. +||++|+.+.|||.-.. ......+.. +..|
T Consensus 150 GaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~l~~~~~~~l~~---q~~~ 226 (252)
T PF02434_consen 150 GAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLENLQDYNPETLHR---QVPI 226 (252)
T ss_dssp GG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-GGG--TTTGGG----SEE
T ss_pred CeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcccccCCHHHhcc---CCCe
Confidence 999999999999999877655 332221 25689999999998 99999999999996443 333344444 3459
Q ss_pred ccccCCC
Q 044015 315 SLHHLDY 321 (478)
Q Consensus 315 SlHH~~~ 321 (478)
|+|+...
T Consensus 227 s~~~~~~ 233 (252)
T PF02434_consen 227 SYHKFEN 233 (252)
T ss_dssp E-EEETT
T ss_pred ecCCCcC
Confidence 9999964
No 5
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=3.2e-12 Score=134.14 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=123.5
Q ss_pred CCCCCeEEEEEecCccchHhHHHHHHHhccCCCcceEEEeecCCCCCCCCCCCCeeeCCCCCccccccccCcchHHHHHH
Q 044015 96 KTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIAR 175 (478)
Q Consensus 96 ~~~~s~IvFgI~Ts~k~~~~R~~~ik~Ww~~~~~r~~vfld~~~~~~~~~~lP~v~is~~~s~~~yt~~~g~~s~~Ri~~ 175 (478)
.-+...++.||+|.. +-.-+|..+-+.-..+..+|.++..- +.++....+ .| .+..+|++ +...
T Consensus 22 LG~RErl~~aVmte~----tlA~a~NrT~ahhvprv~~F~~~~~i---~~~~a~~~~---vs---~~d~r~~~---~~s~ 85 (681)
T KOG3708|consen 22 LGTRERLMAAVMTES----TLALAINRTLAHHVPRVHLFADSSRI---DNDLAQLTN---VS---PYDLRGQK---THSM 85 (681)
T ss_pred hhhHHHHHHHHHHHH----HHHHHHHHHHHhhcceeEEeeccccc---cccHhhccc---cC---ccccCccc---cHHH
Confidence 345677888999822 44456777765555778888887632 222222222 11 11223443 3566
Q ss_pred HHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHHHHHH
Q 044015 176 IIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELV 255 (478)
Q Consensus 176 ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L~ 255 (478)
.+..++++...++|||+++-|+||++...|++++.+.+.++++|+|...++.. .=|.+|+|+.||++++++|.
T Consensus 86 vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~gs-------~rC~l~~G~LLS~s~l~~lr 158 (681)
T KOG3708|consen 86 VLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAEDGS-------GRCRLDTGMLLSQSLLHALR 158 (681)
T ss_pred HHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhCcc-------CccccccceeecHHHHHHHH
Confidence 77888888889999999999999999999999999999999999996555332 23899999999999999999
Q ss_pred HhhhhhhcccccCCCchHHHHHHHHh-cCCceeec
Q 044015 256 RVLDGCIDRYASFYGSDQKVQGCMAE-IGVPVTKE 289 (478)
Q Consensus 256 ~~~~~C~~~~~~~~~gD~~L~~Ci~~-lGV~LT~~ 289 (478)
++.+.|....-+ --.|..||+||.. +||.|+..
T Consensus 159 nnle~C~~~~ls-ad~d~~lgrCi~~At~v~C~~~ 192 (681)
T KOG3708|consen 159 NNLEGCRNDILS-ADPDEWLGRCIQDATGVGCKPL 192 (681)
T ss_pred hhHHHhhccccc-CCcHHHHHHHHHHhhcCCccch
Confidence 999999653211 1258899999985 78888753
No 6
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.06 E-value=5.4e-09 Score=108.57 Aligned_cols=141 Identities=22% Similarity=0.306 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccC-CCCCCeEEeeccCCCCcc----ccc----------cc
Q 044015 171 IRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRY-DHNQMYYIGGNSESVEQD----VIH----------SY 235 (478)
Q Consensus 171 ~Ri~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~y-D~~ep~YIG~~se~~~~~----~~~----------g~ 235 (478)
++.+.++...-. ++|+++.++.+|||+||++++|++.|.+. ++++..|+|.......+. ..+ .|
T Consensus 172 lKtl~~l~w~~~-~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y~~~~Y 250 (349)
T KOG2287|consen 172 LKTLAILLWGVS-KCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEYPCSVY 250 (349)
T ss_pred HHHHHHHHHHHh-cCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHCCCCCC
Confidence 445556665554 58999999999999999999999999999 999999999876542110 000 24
Q ss_pred cccccCccceecHHHHHHHHHhhhhhhcccccCC-CchHHHHHHHHhc-CCceeecCCCcCcCcCCCCcCcccCCCCCCc
Q 044015 236 TMAYGGGGFAISYPLAAELVRVLDGCIDRYASFY-GSDQKVQGCMAEI-GVPVTKELGFHQIDIRGDPYGLLAAHPLSPI 313 (478)
Q Consensus 236 ~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~-~gD~~L~~Ci~~l-GV~LT~~~gfhQ~D~~gd~~G~~~~~~~~P~ 313 (478)
+-..+|+||+||+.++++|.+.... ...+ -+|+.+|.||++. |+.....+++...... +..+. .+-+
T Consensus 251 P~Y~sG~gYvis~~~a~~l~~~s~~-----~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~-----~~~~~-~~~~ 319 (349)
T KOG2287|consen 251 PPYASGPGYVISGDAARRLLKASKH-----LKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLS-----FDPCC-YRDL 319 (349)
T ss_pred CCcCCCceeEecHHHHHHHHHHhcC-----CCccchHHHHHHHHHHHhcCCCcccCccccccccc-----CCCCc-ccce
Confidence 4446899999999999999984211 1223 3899999999975 8887776663332111 11111 2567
Q ss_pred cccccCCCCC
Q 044015 314 VSLHHLDYVL 323 (478)
Q Consensus 314 lSlHH~~~~~ 323 (478)
++.|..++.+
T Consensus 320 ~~~H~~~p~e 329 (349)
T KOG2287|consen 320 LAVHRLSPNE 329 (349)
T ss_pred EEEecCCHHH
Confidence 8889888643
No 7
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=99.06 E-value=2e-09 Score=112.54 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCc---c------cc-------cccc
Q 044015 173 IARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQ---D------VI-------HSYT 236 (478)
Q Consensus 173 i~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~---~------~~-------~g~~ 236 (478)
.+.+++.+++ ..++++|+++|||+|+++++|..+|++......+|+|........ . .. ..|+
T Consensus 224 Tl~~f~wA~~--~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YP 301 (408)
T PLN03193 224 TKTYFATAVA--MWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYF 301 (408)
T ss_pred HHHHHHHHHH--cCCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCC
Confidence 4556666665 468999999999999999999999988776667999997432110 0 00 1133
Q ss_pred ccccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCCcC
Q 044015 237 MAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQ 294 (478)
Q Consensus 237 fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gfhQ 294 (478)
....|+||+||+.+++.|...... +..| -.+|+.+|.||..++|.-.+.+.|+-
T Consensus 302 pyAsG~gYVlS~DLa~~I~~n~~~-L~~y---~~EDV~vG~Wl~~L~V~~vdd~~fcc 355 (408)
T PLN03193 302 RHATGQLYAISKDLASYISINQHV-LHKY---ANEDVSLGSWFIGLDVEHIDDRRLCC 355 (408)
T ss_pred CCCCcceEEehHHHHHHHHhChhh-hccc---CcchhhhhhHhccCCceeeecccccC
Confidence 335789999999999999865432 2222 24899999999888888888888875
No 8
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=98.97 E-value=6.2e-09 Score=98.86 Aligned_cols=114 Identities=16% Similarity=0.207 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccC--CCCCCeEEeeccCCCCc----cccc----------c
Q 044015 171 IRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRY--DHNQMYYIGGNSESVEQ----DVIH----------S 234 (478)
Q Consensus 171 ~Ri~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~y--D~~ep~YIG~~se~~~~----~~~~----------g 234 (478)
.+.+.+++.+.+ ++++.++++++|||+|+++++|...|... ++.+..+.|........ ...+ .
T Consensus 65 ~K~~~~~~w~~~-~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~ 143 (195)
T PF01762_consen 65 LKTLAGLKWASK-HCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDY 143 (195)
T ss_pred HHHHHHHHHHHh-hCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeeccccc
Confidence 456777877776 58999999999999999999999999887 77778887877543211 0110 1
Q ss_pred c-cccccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecC
Q 044015 235 Y-TMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKEL 290 (478)
Q Consensus 235 ~-~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~ 290 (478)
| +|| .|+|++||+.+++.|...... .+...-+|+.+|.|+..+||+.++.|
T Consensus 144 yP~y~-~G~~yvls~~~v~~i~~~~~~----~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 144 YPPYC-SGGGYVLSSDVVKRIYKASSH----TPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred CCCcC-CCCeEEecHHHHHHHHHHhhc----CCCCCchHHHHHHHHHHCCCCccCCC
Confidence 2 355 578999999999999985321 22334589999999999999887643
No 9
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=98.85 E-value=6.1e-08 Score=106.81 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=74.9
Q ss_pred hCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCc----ccc----------ccccccccCccceecH
Q 044015 183 LGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQ----DVI----------HSYTMAYGGGGFAISY 248 (478)
Q Consensus 183 ~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~----~~~----------~g~~fa~GGaG~vLSr 248 (478)
..++++++++++|||+|+++++|+++|.+.+..+.+|+|.......+ ... ..|+-..+|+||+||+
T Consensus 471 ~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~ 550 (636)
T PLN03133 471 TEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSR 550 (636)
T ss_pred HhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcH
Confidence 35789999999999999999999999998888888999987543211 001 1244345789999999
Q ss_pred HHHHHHHHhhhhhhcccccCCCchHHHHHHHHh---cCCcee
Q 044015 249 PLAAELVRVLDGCIDRYASFYGSDQKVQGCMAE---IGVPVT 287 (478)
Q Consensus 249 ~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~---lGV~LT 287 (478)
.+++.|........- +...-+|+.+|.|+++ +|++..
T Consensus 551 Dla~~L~~~s~s~~l--~~f~lEDVyvGi~l~~l~k~gl~v~ 590 (636)
T PLN03133 551 DIAKEVYKRHKEGRL--KMFKLEDVAMGIWIAEMKKEGLEVK 590 (636)
T ss_pred HHHHHHHHhhhhccc--CcCChhhHhHHHHHHHhcccCCCce
Confidence 999999875432211 1122489999999974 455544
No 10
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=98.50 E-value=8.8e-07 Score=91.84 Aligned_cols=146 Identities=15% Similarity=0.092 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHH
Q 044015 172 RIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLA 251 (478)
Q Consensus 172 Ri~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll 251 (478)
+....++.+++ .+|++++++.+|||+|+.+++++..| +..|.+.+|+|.......+.....-+| .+|.||+||+.++
T Consensus 185 KT~l~~~wA~~-~cP~a~YImKgDDDvFVrVp~lL~~L-r~~prr~LY~G~v~~~~~p~Rd~~PpY-~~G~gYvLSrDVA 261 (382)
T PTZ00210 185 KTYLWLRFALH-MFPNVSYIVKGDDDIFIRVPKYLADL-RVMPRHGLYMGRYNYYNRIWRRNQLTY-VNGYCITLSRDTA 261 (382)
T ss_pred HHHHHHHHHHH-hCCCCCeEEEcCCCeEeeHHHHHHHH-hhCCCCceEEEeeCCCCccccCCCCCc-cccceeeccHHHH
Confidence 34445666666 58999999999999999999999999 445778899998865432211111234 4788999999999
Q ss_pred HHHHHhhhhh-h----------cccc--cCCCchHHHHHHHHh-cC-Cce-eecCCCc-CcCcCCCCcCcccCCCCCCcc
Q 044015 252 AELVRVLDGC-I----------DRYA--SFYGSDQKVQGCMAE-IG-VPV-TKELGFH-QIDIRGDPYGLLAAHPLSPIV 314 (478)
Q Consensus 252 ~~L~~~~~~C-~----------~~~~--~~~~gD~~L~~Ci~~-lG-V~L-T~~~gfh-Q~D~~gd~~G~~~~~~~~P~l 314 (478)
+.|....... + +.|. ....+|.++|.-|.. ++ -++ +...+++ -.|.+... +.-+- ..-.|
T Consensus 262 ~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k~~~l~~V~~~~c~Fhd~~~~~-~~~~v--~~~sV 338 (382)
T PTZ00210 262 QAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILREKVVYRNLISVEMGRCHFHNAGKFG-VRKSV--RNMSV 338 (382)
T ss_pred HHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHHHhcCcCceeeeccccccceecCCCC-Ccccc--ccceE
Confidence 9999752211 1 1111 113589999999964 32 222 3333332 22443211 11111 12448
Q ss_pred ccccCCCCC
Q 044015 315 SLHHLDYVL 323 (478)
Q Consensus 315 SlHH~~~~~ 323 (478)
-+||++..+
T Consensus 339 vvHhike~d 347 (382)
T PTZ00210 339 VIHHIQEAD 347 (382)
T ss_pred EEEecCHHH
Confidence 899998843
No 11
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=97.94 E-value=3.3e-05 Score=76.30 Aligned_cols=114 Identities=23% Similarity=0.275 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCC-C-c-ccc-------cc-----ccc
Q 044015 173 IARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESV-E-Q-DVI-------HS-----YTM 237 (478)
Q Consensus 173 i~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~-~-~-~~~-------~g-----~~f 237 (478)
....+..++.+ -+.++|+.+|||+|++++.|...|+++-....+|||...... . + ... +| +.+
T Consensus 96 t~~~f~~A~~~--~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~EpeWkfg~~g~Yfrh 173 (274)
T KOG2288|consen 96 TKAFFSAAVAH--WDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPEWKFGDNGNYFRH 173 (274)
T ss_pred HHHHHHHHHHh--ccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChhhhcCcccccchh
Confidence 34455566653 478999999999999999999999999887889999974321 0 0 111 11 234
Q ss_pred cccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCCc
Q 044015 238 AYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFH 293 (478)
Q Consensus 238 a~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gfh 293 (478)
|+ |+||+||+.|+.-|+-+.+- +..|. .+|+-||.-+.-+.|.=.+.+.++
T Consensus 174 A~-G~~YvlS~dLa~yi~in~~l-L~~y~---nEDVSlGaW~~gldV~h~dd~rlC 224 (274)
T KOG2288|consen 174 AT-GGGYVLSKDLATYISINRQL-LHKYA---NEDVSLGAWMIGLDVEHVDDPRLC 224 (274)
T ss_pred cc-CceEEeeHHHHHHHHHhHHH-HHhhc---cCCcccceeeeeeeeeEecCCccc
Confidence 54 57899999999998876433 22232 379999977644434333334443
No 12
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.57 E-value=0.3 Score=43.01 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=58.4
Q ss_pred CccEEEEEcCcceechhHHHHHhccCCCCC-CeEEeeccCCCCccccccccccccCccceecHHHHHHHHHhhhhhhccc
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRYDHNQ-MYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRY 265 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~e-p~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~ 265 (478)
+.+|++++|||..+..+.|.+++..+.... -..+|.. ..|+++++++.+++++...-+..
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~---- 134 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------VSGAFLLVRREVFEEVGGFDEDF---- 134 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------CceeeEeeeHHHHHHcCCCChhh----
Confidence 689999999999999888888887554332 2233333 57889999999998865321111
Q ss_pred ccCCCchHHHHHHHHhcCCceeecC
Q 044015 266 ASFYGSDQKVQGCMAEIGVPVTKEL 290 (478)
Q Consensus 266 ~~~~~gD~~L~~Ci~~lGV~LT~~~ 290 (478)
..+++|..+...+.+.|.++...+
T Consensus 135 -~~~~eD~~~~~~~~~~g~~i~~~~ 158 (166)
T cd04186 135 -FLYYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred -hccccHHHHHHHHHHcCCeEEEcc
Confidence 115679988888877776665443
No 13
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=92.23 E-value=0.78 Score=43.08 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=63.3
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCC-CCCC----eEEeeccCCCCc-------ccc-------ccccccccCcccee
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYD-HNQM----YYIGGNSESVEQ-------DVI-------HSYTMAYGGGGFAI 246 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD-~~ep----~YIG~~se~~~~-------~~~-------~g~~fa~GGaG~vL 246 (478)
...+++++.|+|+.+.++-|.++++.+. |+-. +|.+.+...... +.. .+..|+. |+.+++
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-G~~m~~ 108 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGGAPFAW-GGSMAF 108 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcCCCcee-cceeee
Confidence 6789999999999999998888887663 4333 333433322100 000 0123333 566889
Q ss_pred cHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecC
Q 044015 247 SYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKEL 290 (478)
Q Consensus 247 Sr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~ 290 (478)
.+.+++++.... ......++|..|++.+.+.|.++...+
T Consensus 109 rr~~L~~~GG~~-----~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 109 RREALEEIGGFE-----ALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred EHHHHHHcccHH-----HHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 999988764221 111235789999999999888776554
No 14
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=92.18 E-value=0.37 Score=44.99 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=57.7
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHHHHHHHhhhhhhccc
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRY 265 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~ 265 (478)
...+|++++|+|+.+.++-|.+++..+...+--.+|.. ...|+++++.+.+++++... +. .
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~--------------~~~g~~~~~r~~~~~~~ggf-~~----~ 145 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL--------------CAFGKSMALRREVLDAIGGF-EA----F 145 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee--------------cccCceeeeEHHHHHhccCh-HH----H
Confidence 45799999999999988888888876532222233322 34678999999999987543 11 1
Q ss_pred ccCCCchHHHHHHHHhcCCceeec
Q 044015 266 ASFYGSDQKVQGCMAEIGVPVTKE 289 (478)
Q Consensus 266 ~~~~~gD~~L~~Ci~~lGV~LT~~ 289 (478)
....++|..|+.-+.+.|..+...
T Consensus 146 ~~~~~eD~~l~~rl~~~G~~i~~~ 169 (196)
T cd02520 146 ADYLAEDYFLGKLIWRLGYRVVLS 169 (196)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEc
Confidence 112357999988888777665433
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=91.52 E-value=0.71 Score=43.59 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=56.5
Q ss_pred HHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccC-CCCCCeEEeeccCCCCc-------c------------ccccc
Q 044015 176 IIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRY-DHNQMYYIGGNSESVEQ-------D------------VIHSY 235 (478)
Q Consensus 176 ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~y-D~~ep~YIG~~se~~~~-------~------------~~~g~ 235 (478)
.+.+..+. -..+|++++|||+.+.++-|.++++.+ ++.-...-|...-.... . .....
T Consensus 77 a~n~~~~~--~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (228)
T PF13641_consen 77 ALNEALAA--ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRRAL 154 (228)
T ss_dssp HHHHHHHH-----SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B--
T ss_pred HHHHHHHh--cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhccc
Confidence 44555543 238999999999999988888888777 44433333332110000 0 00001
Q ss_pred c-ccccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeec
Q 044015 236 T-MAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKE 289 (478)
Q Consensus 236 ~-fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~ 289 (478)
. ....|+++++.+.+++++... +. ...++|..++.-+...|.++...
T Consensus 155 ~~~~~~G~~~~~rr~~~~~~g~f-d~------~~~~eD~~l~~r~~~~G~~~~~~ 202 (228)
T PF13641_consen 155 GVAFLSGSGMLFRRSALEEVGGF-DP------FILGEDFDLCLRLRAAGWRIVYA 202 (228)
T ss_dssp --S-B--TEEEEEHHHHHHH-S---S------SSSSHHHHHHHHHHHTT--EEEE
T ss_pred ceeeccCcEEEEEHHHHHHhCCC-CC------CCcccHHHHHHHHHHCCCcEEEE
Confidence 1 223579999999999998643 22 12568999998888888776543
No 16
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=89.66 E-value=1.5 Score=41.45 Aligned_cols=99 Identities=14% Similarity=-0.041 Sum_probs=56.3
Q ss_pred CccEEEEEcCcceechhHHHHHh---ccCCCCCCe-EEeeccCCCC-----cccc-------------cc--ccccccCc
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVL---GRYDHNQMY-YIGGNSESVE-----QDVI-------------HS--YTMAYGGG 242 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~L---s~yD~~ep~-YIG~~se~~~-----~~~~-------------~g--~~fa~GGa 242 (478)
+.+|++++|+|+.+.++.|.+++ ..+...... .+|....... .... .. ......|+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITS 154 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeecc
Confidence 78999999999999988888874 333322222 2222211100 0000 00 00112367
Q ss_pred cceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecC
Q 044015 243 GFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKEL 290 (478)
Q Consensus 243 G~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~ 290 (478)
|.++++.+++++...-+.. ...++|..+..-+.+.|..+...+
T Consensus 155 ~~~~rr~~~~~~ggfd~~~-----~~~~eD~d~~~r~~~~G~~~~~~~ 197 (237)
T cd02526 155 GSLISLEALEKVGGFDEDL-----FIDYVDTEWCLRARSKGYKIYVVP 197 (237)
T ss_pred ceEEcHHHHHHhCCCCHHH-----cCccchHHHHHHHHHcCCcEEEEc
Confidence 8899999998876432221 113468888888877886654433
No 17
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=88.98 E-value=0.32 Score=53.32 Aligned_cols=65 Identities=22% Similarity=0.380 Sum_probs=41.4
Q ss_pred hhhhhhcccccCCCchHHHHHHHHh-cCCceeecCC-C--cCcCcC-CCCcCcccCCCCCCccccccCCCC
Q 044015 257 VLDGCIDRYASFYGSDQKVQGCMAE-IGVPVTKELG-F--HQIDIR-GDPYGLLAAHPLSPIVSLHHLDYV 322 (478)
Q Consensus 257 ~~~~C~~~~~~~~~gD~~L~~Ci~~-lGV~LT~~~g-f--hQ~D~~-gd~~G~~~~~~~~P~lSlHH~~~~ 322 (478)
+++.|.....+ ..+|.+||+||.+ +||+||++.- + |..... .+..+..+...+...||+|+.+..
T Consensus 1 hl~~C~~~~~s-~~~Dv~lGRCI~~~~gi~Ct~~~q~l~y~~~~~~~~~~~~~~~~~~~~~AiTlHPvk~p 70 (499)
T PF05679_consen 1 HLDWCLKNIYS-NHEDVELGRCIKKFTGISCTWSYQGLFYHNYELNKNDFIGDLKNKEFHNAITLHPVKSP 70 (499)
T ss_pred ChhHHhhhcCC-CCchhHHHHHHHHhcCCCeeecccceEEEeeccCCCcccccccchhhhcceeeccCCCH
Confidence 35789864322 3489999999985 8999999762 1 111222 222333444445677999999884
No 18
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.60 E-value=2.3 Score=39.36 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=55.8
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCC-CCCCeEEeeccCCCCccccccccccccCccceecHHHHHHHHHhhhhhhcc
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYD-HNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDR 264 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD-~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~ 264 (478)
.+.+|++++|||..+..+.|.++++.++ +.-.++.|...... + .++|+++.+.+++++... +. .
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~g~~-~~---~ 142 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPD------G-----SFVGVLISRRVVEKIGLP-DK---E 142 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCC------C-----ceEEEEEeHHHHHHhCCC-Ch---h
Confidence 4689999999999999888877777665 33333333322111 1 456789999998876421 11 1
Q ss_pred cccCCCchHHHHHHHHhcCCce
Q 044015 265 YASFYGSDQKVQGCMAEIGVPV 286 (478)
Q Consensus 265 ~~~~~~gD~~L~~Ci~~lGV~L 286 (478)
+ ..+++|..+..=+.+.|..+
T Consensus 143 ~-~~~~eD~~~~~r~~~~G~~i 163 (202)
T cd04185 143 F-FIWGDDTEYTLRASKAGPGI 163 (202)
T ss_pred h-hccchHHHHHHHHHHcCCcE
Confidence 1 23568998887777777665
No 19
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=85.32 E-value=2.6 Score=39.63 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCCccEEEEEcCcceechh---HHHHHhccCCCCCCeEEeeccC-------------------C--CCcc
Q 044015 175 RIIKETFRLGLGDVRWFVLGDDDTVFFLE---NLVTVLGRYDHNQMYYIGGNSE-------------------S--VEQD 230 (478)
Q Consensus 175 ~ml~e~~~~~~p~~kWfv~~DDDTf~~~~---nL~~~Ls~yD~~ep~YIG~~se-------------------~--~~~~ 230 (478)
.+++++.+ .+.++.++.|||..+..+ .|.++++..+...-+..|.... . ....
T Consensus 76 ~~w~~~v~---~~~~~~lIlEDDv~~~~~f~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (200)
T PF01755_consen 76 KAWQRIVD---SGLEYALILEDDVIFDPDFKEFLEEILSHIPDWDFLRLGGWKDNSYSPGDIFLSRLSTFLSRSKRYKRK 152 (200)
T ss_pred HHHHHHHH---cCCCeEEEEeccccccccHHHHHHHHHhhcccccchhhccccccccccccccceeeeehhhhhhhcccC
Confidence 45566654 367999999999998842 3444444333223333322100 0 0000
Q ss_pred ---------ccccccccccCccceecHHHHHHHHHhh
Q 044015 231 ---------VIHSYTMAYGGGGFAISYPLAAELVRVL 258 (478)
Q Consensus 231 ---------~~~g~~fa~GGaG~vLSr~Ll~~L~~~~ 258 (478)
.........|.+||+||+..|++|....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~t~aY~Is~~gA~kLL~~~ 189 (200)
T PF01755_consen 153 PIPPFGSRKLIRPAKYPYGTCAYLISRKGARKLLEAS 189 (200)
T ss_pred cccccCCceEEeecCCCCcceeeeeCHHHHHHHHHhC
Confidence 0011234568889999999999999863
No 20
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=84.65 E-value=1.9 Score=40.62 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=56.2
Q ss_pred CccEEEEEcCcceechhHHHHHhccCCCCCC-eEEeec-cC-CCCcc--cc---------------ccc----cccccCc
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRYDHNQM-YYIGGN-SE-SVEQD--VI---------------HSY----TMAYGGG 242 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep-~YIG~~-se-~~~~~--~~---------------~g~----~fa~GGa 242 (478)
+.+|++++|+|+++.++.|.++++.++.+.. -.++.. .. ..... .. .+. .....|+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 163 (234)
T cd06421 84 TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGS 163 (234)
T ss_pred CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCc
Confidence 6799999999999998888888887754332 233322 10 00000 00 000 1123478
Q ss_pred cceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCce
Q 044015 243 GFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPV 286 (478)
Q Consensus 243 G~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~L 286 (478)
|.++++.+++++... ++ ..+++|..++.=+...|..+
T Consensus 164 ~~~~r~~~~~~ig~~-~~------~~~~eD~~l~~r~~~~g~~i 200 (234)
T cd06421 164 GAVVRREALDEIGGF-PT------DSVTEDLATSLRLHAKGWRS 200 (234)
T ss_pred eeeEeHHHHHHhCCC-Cc------cceeccHHHHHHHHHcCceE
Confidence 999999999887542 11 12568988887666666544
No 21
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=84.37 E-value=2.1 Score=39.50 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=55.9
Q ss_pred EEEEEcCcceechhHHHHHhccCCCCCCeEEeec-c----CCC---Ccccc--------------ccccccccCccceec
Q 044015 190 WFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGN-S----ESV---EQDVI--------------HSYTMAYGGGGFAIS 247 (478)
Q Consensus 190 Wfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~-s----e~~---~~~~~--------------~g~~fa~GGaG~vLS 247 (478)
|++++|+||.+..+-|.+.+..++..+--.++.+ . .+. .+... .+.....-|+|.+++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~r 80 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLFR 80 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceeee
Confidence 7899999999999888888877762111112111 1 100 01000 111123458999999
Q ss_pred HHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceee
Q 044015 248 YPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTK 288 (478)
Q Consensus 248 r~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~ 288 (478)
+.+++++...- .....++|..++.=+.+.|-++..
T Consensus 81 ~~~l~~vg~~~------~~~~~~ED~~l~~~l~~~G~~~~~ 115 (193)
T PF13632_consen 81 REALREVGGFD------DPFSIGEDMDLGFRLRRAGYRIVY 115 (193)
T ss_pred HHHHHHhCccc------ccccccchHHHHHHHHHCCCEEEE
Confidence 99999876431 012356899988877777755543
No 22
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=83.13 E-value=2.8 Score=39.94 Aligned_cols=95 Identities=8% Similarity=-0.014 Sum_probs=55.0
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCC--CC-------ccc--------------cccccccccCc
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSES--VE-------QDV--------------IHSYTMAYGGG 242 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~--~~-------~~~--------------~~g~~fa~GGa 242 (478)
...+|++++|+|+.+.++-|.+++..+...+--.++..... .. +.. ..+..+...|+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 165 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGT 165 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccc
Confidence 36899999999999998888886655533332233332110 00 000 00101123466
Q ss_pred cceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCcee
Q 044015 243 GFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVT 287 (478)
Q Consensus 243 G~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT 287 (478)
+.++.+.+++++... +. ..+.+|..|..-+...|.++.
T Consensus 166 ~~~~rr~~~~~vgg~-~~------~~~~ED~~l~~rl~~~G~~~~ 203 (232)
T cd06437 166 AGVWRKECIEDAGGW-NH------DTLTEDLDLSYRAQLKGWKFV 203 (232)
T ss_pred hhhhhHHHHHHhCCC-CC------CcchhhHHHHHHHHHCCCeEE
Confidence 667888888776432 21 124689999988877775543
No 23
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=82.76 E-value=2.6 Score=39.25 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=42.1
Q ss_pred CccEEEEEcCcceechhHHHHHhccCCCCCCeEEeecc--CCCCccc---------------------cccccccccCcc
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNS--ESVEQDV---------------------IHSYTMAYGGGG 243 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~s--e~~~~~~---------------------~~g~~fa~GGaG 243 (478)
..+|++++|.|+.+.++.|..++..+...+-..++... .+...+. ..+ .+..||.|
T Consensus 89 ~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~G~~ 167 (191)
T cd06436 89 ERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTG-TVGLGGNG 167 (191)
T ss_pred CccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cEEECCee
Confidence 45799999999999988888866555422222332221 1100000 011 24579999
Q ss_pred ceecHHHHHHH
Q 044015 244 FAISYPLAAEL 254 (478)
Q Consensus 244 ~vLSr~Ll~~L 254 (478)
.++++.+++++
T Consensus 168 ~~~r~~~l~~v 178 (191)
T cd06436 168 QFMRLSALDGL 178 (191)
T ss_pred EEEeHHHHHHh
Confidence 99999999998
No 24
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=82.68 E-value=4.8 Score=38.02 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=25.0
Q ss_pred CccEEEEEcCcceechhHHHHHhccCC
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRYD 213 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD 213 (478)
+.+|++++|+|+.+..+.|.+++..++
T Consensus 77 ~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 77 TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 689999999999999999999998886
No 25
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=82.43 E-value=3.5 Score=40.77 Aligned_cols=106 Identities=14% Similarity=0.042 Sum_probs=56.2
Q ss_pred HHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCC--CCeEEeeccCCC-----Cccc-----------------
Q 044015 176 IIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHN--QMYYIGGNSESV-----EQDV----------------- 231 (478)
Q Consensus 176 ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~--ep~YIG~~se~~-----~~~~----------------- 231 (478)
-++.+.+ .+.+|++++|||+.+..+.|.+++..++.. .-..+|...-+. .+..
T Consensus 65 Gi~~a~~---~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (281)
T TIGR01556 65 GLDASFR---RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTT 141 (281)
T ss_pred HHHHHHH---CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCC
Confidence 3444443 368999999999999977777776655432 223333321000 0000
Q ss_pred cccccccccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecC
Q 044015 232 IHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKEL 290 (478)
Q Consensus 232 ~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~ 290 (478)
.....+ ..++|.++++.+++++...-+.. -...+|.++..=+.+.|..+...+
T Consensus 142 ~~~~~~-~~~sg~li~~~~~~~iG~fde~~-----fi~~~D~e~~~R~~~~G~~i~~~~ 194 (281)
T TIGR01556 142 PQKTSF-LISSGCLITREVYQRLGMMDEEL-----FIDHVDTEWSLRAQNYGIPLYIDP 194 (281)
T ss_pred ceeccE-EEcCcceeeHHHHHHhCCccHhh-----cccchHHHHHHHHHHCCCEEEEeC
Confidence 000011 23567899999998875421111 113457665433345676554443
No 26
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.94 E-value=4.6 Score=37.62 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=54.9
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCC-CCCCeEEeeccCCCCc-------cc-------------cccccccccCccc
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYD-HNQMYYIGGNSESVEQ-------DV-------------IHSYTMAYGGGGF 244 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD-~~ep~YIG~~se~~~~-------~~-------------~~g~~fa~GGaG~ 244 (478)
...+|++++|+|+.+.++-|.+++..+. +....+.|........ .. ..+..+..-|+++
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANM 160 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceE
Confidence 4579999999999998888888887554 4445566654322100 00 0111233357888
Q ss_pred eecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCC
Q 044015 245 AISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGV 284 (478)
Q Consensus 245 vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV 284 (478)
++++.+++++-..-+. .....+|..+..-+...|-
T Consensus 161 ~~rr~~~~~~ggf~~~-----~~~~~eD~~~~~~~~~~g~ 195 (229)
T cd04192 161 AYRKEAFFEVGGFEGN-----DHIASGDDELLLAKVASKY 195 (229)
T ss_pred EEEHHHHHHhcCCccc-----cccccCCHHHHHHHHHhCC
Confidence 9999999987543110 1123466666554444443
No 27
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=81.61 E-value=2.8 Score=37.10 Aligned_cols=46 Identities=17% Similarity=0.414 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHHHHH
Q 044015 175 RIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAEL 254 (478)
Q Consensus 175 ~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L 254 (478)
.+++++.+ .+.++.++.|||..+..+ |.+||+||+.++++|
T Consensus 73 ~~w~~~~~---~~~~~alIlEDDv~~~~~------------------------------------~~~~Y~vs~~~A~~l 113 (128)
T cd06532 73 KLWQKIVE---SNLEYALILEDDAILDPD------------------------------------GTAGYLVSRKGAKKL 113 (128)
T ss_pred HHHHHHHH---cCCCeEEEEccCcEECCC------------------------------------CceEEEeCHHHHHHH
Confidence 34555554 466899999999999876 778999999999999
Q ss_pred HHhhh
Q 044015 255 VRVLD 259 (478)
Q Consensus 255 ~~~~~ 259 (478)
.....
T Consensus 114 l~~~~ 118 (128)
T cd06532 114 LAALE 118 (128)
T ss_pred HHhCC
Confidence 98643
No 28
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=80.74 E-value=3 Score=40.14 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=57.6
Q ss_pred CccEEEEEcCcceechhHHHHHhccCCCC--CCeEEeeccCCC--Cccc---------------------cccccccccC
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRYDHN--QMYYIGGNSESV--EQDV---------------------IHSYTMAYGG 241 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~--ep~YIG~~se~~--~~~~---------------------~~g~~fa~GG 241 (478)
..+|++++|+|+.+.++.|.+++..+... +-.++|...... .+.. ..+.....+|
T Consensus 84 ~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 163 (241)
T cd06427 84 RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGG 163 (241)
T ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCC
Confidence 46999999999999998888888776432 233444331110 0000 0011234578
Q ss_pred ccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCcee
Q 044015 242 GGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVT 287 (478)
Q Consensus 242 aG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT 287 (478)
+++++++.+++++...- . ..+.+|..+..=+...|..+.
T Consensus 164 ~~~~~rr~~~~~vgg~~-~------~~~~eD~~l~~rl~~~G~r~~ 202 (241)
T cd06427 164 TSNHFRTDVLRELGGWD-P------FNVTEDADLGLRLARAGYRTG 202 (241)
T ss_pred chHHhhHHHHHHcCCCC-c------ccchhhHHHHHHHHHCCceEE
Confidence 88999999988875431 1 124578887766666665553
No 29
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=80.26 E-value=9.1 Score=36.24 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=57.4
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccc-------cccc---------------cccccCcc
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDV-------IHSY---------------TMAYGGGG 243 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~-------~~g~---------------~fa~GGaG 243 (478)
.+.+|++++|+|+.+.++.|.++++.+...+--.++.......... .+.+ .....|++
T Consensus 83 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (236)
T cd06435 83 PDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTM 162 (236)
T ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCceEEecce
Confidence 4579999999999999988888887775323234443211100000 0000 01124677
Q ss_pred ceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCcee
Q 044015 244 FAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVT 287 (478)
Q Consensus 244 ~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT 287 (478)
.++++.+++++.. ++.+ .+.+|..++.=+...|-++.
T Consensus 163 ~~~rr~~~~~iGg-f~~~------~~~eD~dl~~r~~~~G~~~~ 199 (236)
T cd06435 163 CLIRRSALDDVGG-WDEW------CITEDSELGLRMHEAGYIGV 199 (236)
T ss_pred EEEEHHHHHHhCC-CCCc------cccchHHHHHHHHHCCcEEE
Confidence 8999999998754 2322 24689888877777775543
No 30
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=78.25 E-value=9.1 Score=34.43 Aligned_cols=92 Identities=10% Similarity=0.120 Sum_probs=56.9
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHHHHHHHhhhhhhccc
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRY 265 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~ 265 (478)
...+|++++|+|+.+..+.|.++++..++. ....|.......... .....|+++++.+..+.++.. ++.+..
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~~~----~~~~~~~~~~~~r~~~~~~gg-f~~~~~-- 149 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLLNEKLT----ERGIRGCNMSFWKKDLLAVNG-FDEEFT-- 149 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeecccccc----eeEeccceEEEEHHHHHHhCC-CCcccc--
Confidence 357999999999999887777777776433 344455432221111 134557788888888875443 333211
Q ss_pred ccCCCchHHHHHHHHhcCCce
Q 044015 266 ASFYGSDQKVQGCMAEIGVPV 286 (478)
Q Consensus 266 ~~~~~gD~~L~~Ci~~lGV~L 286 (478)
...++|..++.=+.+.|..+
T Consensus 150 -~~~~eD~~l~~r~~~~g~~~ 169 (182)
T cd06420 150 -GWGGEDSELVARLLNSGIKF 169 (182)
T ss_pred -cCCcchHHHHHHHHHcCCcE
Confidence 11247988887777777544
No 31
>PRK11204 N-glycosyltransferase; Provisional
Probab=78.24 E-value=4 Score=42.98 Aligned_cols=98 Identities=11% Similarity=0.011 Sum_probs=61.0
Q ss_pred CCccEEEEEcCcceechhHHHHHhccC--CCCCCeEEeeccCCC-------Ccc--------------ccccccccccCc
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRY--DHNQMYYIGGNSESV-------EQD--------------VIHSYTMAYGGG 242 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~y--D~~ep~YIG~~se~~-------~~~--------------~~~g~~fa~GGa 242 (478)
.+.+|++++|+|+.+..+.|.++++.+ |++-...-|.+.... .+. ...+..++.+|+
T Consensus 133 a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 212 (420)
T PRK11204 133 ARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGV 212 (420)
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecce
Confidence 467999999999999998888888877 333222333221100 000 001112344688
Q ss_pred cceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecC
Q 044015 243 GFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKEL 290 (478)
Q Consensus 243 G~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~ 290 (478)
+.++.+.+++++... +. ...++|..++.-+.+.|.++...|
T Consensus 213 ~~~~rr~~l~~vgg~-~~------~~~~ED~~l~~rl~~~G~~i~~~p 253 (420)
T PRK11204 213 ITAFRKSALHEVGYW-ST------DMITEDIDISWKLQLRGWDIRYEP 253 (420)
T ss_pred eeeeeHHHHHHhCCC-CC------CcccchHHHHHHHHHcCCeEEecc
Confidence 889999988876432 11 225689999888888886665544
No 32
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=77.81 E-value=2.5 Score=38.79 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=30.2
Q ss_pred CCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeec
Q 044015 185 LGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGN 223 (478)
Q Consensus 185 ~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~ 223 (478)
..+.+|++++|.|+.+.++.|.+++..+........|..
T Consensus 79 ~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~ 117 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYY 117 (183)
T ss_pred CCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEE
Confidence 356899999999999998888888877755445555544
No 33
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=76.87 E-value=15 Score=34.28 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=63.3
Q ss_pred ccEEEEEcCcceechhHHHHHhcc-CCCCCCeEEeeccCCCCcc---ccc-----------------ccccc-ccCccce
Q 044015 188 VRWFVLGDDDTVFFLENLVTVLGR-YDHNQMYYIGGNSESVEQD---VIH-----------------SYTMA-YGGGGFA 245 (478)
Q Consensus 188 ~kWfv~~DDDTf~~~~nL~~~Ls~-yD~~ep~YIG~~se~~~~~---~~~-----------------g~~fa-~GGaG~v 245 (478)
.+|++++|+|..+.++.|.+++.. .+....+.+|......... ..+ +..+. ...+..+
T Consensus 83 gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g~~~ 162 (211)
T cd04188 83 GDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFKL 162 (211)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccCcee
Confidence 499999999999999888888877 4666678888775432110 000 00111 1223468
Q ss_pred ecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCCcC
Q 044015 246 ISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQ 294 (478)
Q Consensus 246 LSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gfhQ 294 (478)
+++.+++++.+... ...|..|.++..-+.+.|.++...|--++
T Consensus 163 ~~r~~~~~~~~~~~------~~~~~~d~el~~r~~~~g~~~~~vpi~~~ 205 (211)
T cd04188 163 FTRDAARRLFPRLH------LERWAFDVELLVLARRLGYPIEEVPVRWV 205 (211)
T ss_pred EcHHHHHHHHhhhh------ccceEeeHHHHHHHHHcCCeEEEcCccee
Confidence 89999988764321 12255688777777778877666554443
No 34
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=75.72 E-value=4.9 Score=43.06 Aligned_cols=99 Identities=11% Similarity=-0.027 Sum_probs=62.4
Q ss_pred CCccEEEEEcCcceechhHHHHHhccC--CCCCCeEEeeccCCC-------Ccc--------------ccccccccccCc
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRY--DHNQMYYIGGNSESV-------EQD--------------VIHSYTMAYGGG 242 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~y--D~~ep~YIG~~se~~-------~~~--------------~~~g~~fa~GGa 242 (478)
.+.++++++|+|+.+..+.|.++++.+ |++-...-|.+.... .+. ...+..++.+|+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~ 233 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGV 233 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCc
Confidence 468999999999999998888887766 343333333221100 000 011222455788
Q ss_pred cceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCC
Q 044015 243 GFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELG 291 (478)
Q Consensus 243 G~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~g 291 (478)
+.++.+.+++++...-+ ....+|..++.-+...|-.+..++.
T Consensus 234 ~~~~rr~al~~vGg~~~-------~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 234 VAAFRRRALADVGYWSP-------DMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred eeEEEHHHHHHcCCCCC-------CcccccHHHHHHHHHcCCeEEEeec
Confidence 88899998888643311 1246899999999888876655543
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=75.14 E-value=7.1 Score=41.00 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=58.3
Q ss_pred CCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccc------------------------ccccccccc
Q 044015 185 LGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDV------------------------IHSYTMAYG 240 (478)
Q Consensus 185 ~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~------------------------~~g~~fa~G 240 (478)
.++.+|+++.|+|+.+.++.|.++++.+.....-.++.......... ..+...+.-
T Consensus 131 ~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (384)
T TIGR03469 131 APPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAA 210 (384)
T ss_pred CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHHHHHHHHHHHhcchhhhcCCCccceeec
Confidence 34489999999999999888888877654322222222111000000 000000123
Q ss_pred CccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCcee
Q 044015 241 GGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVT 287 (478)
Q Consensus 241 GaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT 287 (478)
|+++++++.+.+++-..-+.. ....+|..|++-+++.|-++.
T Consensus 211 G~~~lirr~~~~~vGGf~~~~-----~~~~ED~~L~~r~~~~G~~v~ 252 (384)
T TIGR03469 211 GGCILIRREALERIGGIAAIR-----GALIDDCTLAAAVKRSGGRIW 252 (384)
T ss_pred ceEEEEEHHHHHHcCCHHHHh-----hCcccHHHHHHHHHHcCCcEE
Confidence 678999999999886542211 124689999999998875443
No 36
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=72.94 E-value=8.9 Score=36.69 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=24.2
Q ss_pred ccEEEEEcCcceechhHHHHHhccCCCCC
Q 044015 188 VRWFVLGDDDTVFFLENLVTVLGRYDHNQ 216 (478)
Q Consensus 188 ~kWfv~~DDDTf~~~~nL~~~Ls~yD~~e 216 (478)
.+|++++|+|+.+..+-|.++++.+...+
T Consensus 110 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 110 GEIVVFTDANALLDPDALRLLVRHFADPS 138 (251)
T ss_pred CCEEEEEccccCcCHHHHHHHHHHhcCCC
Confidence 49999999999999888888888875333
No 37
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=72.80 E-value=10 Score=39.58 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=61.8
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCC-CCCCeEEeeccCCC-Cccc---------cc------------c-ccccccC
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYD-HNQMYYIGGNSESV-EQDV---------IH------------S-YTMAYGG 241 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD-~~ep~YIG~~se~~-~~~~---------~~------------g-~~fa~GG 241 (478)
...+|+++.|+|+.+.++-|.++++.+. ++-. .++...... .++. .+ + ..+ ..|
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~-~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~G 202 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVG-LVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMVARALGRARF-CFG 202 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcc-eEeccccCCCCCCHHHHHHHHHhhhhhhHHHHHHHhccCCcc-ccC
Confidence 4689999999999999999988888874 3322 222222111 0000 00 0 012 246
Q ss_pred ccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCC
Q 044015 242 GGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELG 291 (478)
Q Consensus 242 aG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~g 291 (478)
+.+++.|.+++++...-.. .....+|..|+.=+.+.|.++...+.
T Consensus 203 ~~~a~RR~~l~~iGGf~~~-----~~~~~ED~~l~~~i~~~G~~v~~~~~ 247 (373)
T TIGR03472 203 ATMALRRATLEAIGGLAAL-----AHHLADDYWLGELVRALGLRVVLAPV 247 (373)
T ss_pred hhhheeHHHHHHcCChHHh-----cccchHHHHHHHHHHHcCCeEEecch
Confidence 7788999998887754211 12246899999999988876655443
No 38
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.55 E-value=15 Score=33.78 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=54.9
Q ss_pred CCCccEEEEEcCcceechhHHHHHhcc-CCCCCCeEEeecc----CCCC--ccc---ccc-----------ccccccCcc
Q 044015 185 LGDVRWFVLGDDDTVFFLENLVTVLGR-YDHNQMYYIGGNS----ESVE--QDV---IHS-----------YTMAYGGGG 243 (478)
Q Consensus 185 ~p~~kWfv~~DDDTf~~~~nL~~~Ls~-yD~~ep~YIG~~s----e~~~--~~~---~~g-----------~~fa~GGaG 243 (478)
....+|++++|+|..+.++.|.++++. .......+++... +... ... ... ......|++
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCT 156 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCce
Confidence 356899999999999988888888876 3333444444431 1100 000 000 012346888
Q ss_pred ceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcC
Q 044015 244 FAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIG 283 (478)
Q Consensus 244 ~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lG 283 (478)
+++.+.+++++...... ..+.+|..+...+...|
T Consensus 157 ~~~r~~~~~~~~~~~~~------~~~~~D~~~~~~~~~~~ 190 (214)
T cd04196 157 MAFNRELLELALPFPDA------DVIMHDWWLALLASAFG 190 (214)
T ss_pred eeEEHHHHHhhcccccc------ccccchHHHHHHHHHcC
Confidence 99999999887653211 02456877777665543
No 39
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=72.40 E-value=6.3 Score=36.21 Aligned_cols=95 Identities=11% Similarity=0.019 Sum_probs=53.1
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCC--CCCCeEEeeccC---CCC---ccc----c-c--c---ccccccCccceec
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYD--HNQMYYIGGNSE---SVE---QDV----I-H--S---YTMAYGGGGFAIS 247 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD--~~ep~YIG~~se---~~~---~~~----~-~--g---~~fa~GGaG~vLS 247 (478)
.+.+|++++|+|.++.++.|..++..+. ++-.++.|.... ... ... . . . ......|+++++.
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 158 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTSHDDILKFARRRSPFNHPTVMFR 158 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCCCHHHHHHHhccCCCCCChHHhhh
Confidence 4679999999999999888877777653 333344333211 000 000 0 0 0 0112345566777
Q ss_pred HHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCcee
Q 044015 248 YPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVT 287 (478)
Q Consensus 248 r~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT 287 (478)
+.+++++... +. ...++|..+...+...|-++.
T Consensus 159 r~~~~~~g~~-~~------~~~~eD~~~~~r~~~~g~~~~ 191 (201)
T cd04195 159 KSKVLAVGGY-QD------LPLVEDYALWARMLANGARFA 191 (201)
T ss_pred HHHHHHcCCc-CC------CCCchHHHHHHHHHHcCCcee
Confidence 7766654321 11 135689988888877665443
No 40
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=71.25 E-value=16 Score=34.41 Aligned_cols=94 Identities=7% Similarity=-0.028 Sum_probs=51.9
Q ss_pred CccEEEEEcCcceechhHHHHHhccCC-CCCCeEEeeccCCC-C--------------ccc-------cccccccccCcc
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRYD-HNQMYYIGGNSESV-E--------------QDV-------IHSYTMAYGGGG 243 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD-~~ep~YIG~~se~~-~--------------~~~-------~~g~~fa~GGaG 243 (478)
+.+|++++|||+.+.++-|.++++.+. +......|...... . ... .....++..|++
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHH 160 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCcccccccccccccccccc
Confidence 579999999999988877888776543 33333334321100 0 000 000012345667
Q ss_pred ceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCce
Q 044015 244 FAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPV 286 (478)
Q Consensus 244 ~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~L 286 (478)
.++++.+++++.. +++.. ..++|..+..=+.+.|..+
T Consensus 161 ~~~~~~~~~~~g~-~~~~~-----~~~eD~~l~~r~~~~G~~~ 197 (249)
T cd02525 161 GAYRREVFEKVGG-FDESL-----VRNEDAELNYRLRKAGYKI 197 (249)
T ss_pred ceEEHHHHHHhCC-CCccc-----CccchhHHHHHHHHcCcEE
Confidence 7888888877642 22221 1346777665444556444
No 41
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.18 E-value=12 Score=34.87 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=53.9
Q ss_pred ccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccC--CCC--cc--------ccccccccccCccceecHHHHHHHH
Q 044015 188 VRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSE--SVE--QD--------VIHSYTMAYGGGGFAISYPLAAELV 255 (478)
Q Consensus 188 ~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se--~~~--~~--------~~~g~~fa~GGaG~vLSr~Ll~~L~ 255 (478)
.+|++++|+|..+..+.|.+++...........+.... ... .. ........+++.|+++++.+.+++.
T Consensus 73 ~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G 152 (221)
T cd02522 73 GDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRFDDPGPRLRLLELGANLRSRLFGLPYGDQGLFIRRELFEELG 152 (221)
T ss_pred CCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeeecCCccchhhhhhcccceecccCCCcCCceEEEEHHHHHHhC
Confidence 69999999999999888888776655444332222211 110 00 0001124467789999999887765
Q ss_pred HhhhhhhcccccCCCchHHHHHHHHhcCCc
Q 044015 256 RVLDGCIDRYASFYGSDQKVQGCMAEIGVP 285 (478)
Q Consensus 256 ~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~ 285 (478)
.. ++. .+++|..+..=+...|-.
T Consensus 153 ~f-d~~------~~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 153 GF-PEL------PLMEDVELVRRLRRRGRP 175 (221)
T ss_pred CC-Ccc------ccccHHHHHHHHHhCCCE
Confidence 32 221 156788776555566643
No 42
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=69.11 E-value=12 Score=34.27 Aligned_cols=98 Identities=10% Similarity=-0.002 Sum_probs=56.8
Q ss_pred CccEEEEEcCcceechhHHHHHhccCC--CCCCeEEeeccCCC---C---c------cccccccccccCccceecHHHHH
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRYD--HNQMYYIGGNSESV---E---Q------DVIHSYTMAYGGGGFAISYPLAA 252 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD--~~ep~YIG~~se~~---~---~------~~~~g~~fa~GGaG~vLSr~Ll~ 252 (478)
..+|++++|+|..+..+.|..+++.++ +.-.+..|...... . + ...........|++.++++.+++
T Consensus 83 ~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 162 (202)
T cd04184 83 TGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWSPDLLLSQNYIGHLLVYRRSLVR 162 (202)
T ss_pred cCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCCHHHhhhcCCccceEeEEHHHHH
Confidence 469999999999998888888887662 33333333321100 0 0 00001123455677788999888
Q ss_pred HHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecC
Q 044015 253 ELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKEL 290 (478)
Q Consensus 253 ~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~ 290 (478)
++... +.. + ..++|..|..=+.+.|..+...+
T Consensus 163 ~iggf-~~~---~--~~~eD~~l~~rl~~~g~~~~~~~ 194 (202)
T cd04184 163 QVGGF-REG---F--EGAQDYDLVLRVSEHTDRIAHIP 194 (202)
T ss_pred HhCCC-CcC---c--ccchhHHHHHHHHhccceEEEcc
Confidence 87642 221 1 13468877766666676665544
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.78 E-value=19 Score=32.40 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=54.9
Q ss_pred CccEEEEEcCcceechhHHHHHhccC--CCCCCeEEeeccC---CCCcc----------ccccccccccCccceecHHHH
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRY--DHNQMYYIGGNSE---SVEQD----------VIHSYTMAYGGGGFAISYPLA 251 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~y--D~~ep~YIG~~se---~~~~~----------~~~g~~fa~GGaG~vLSr~Ll 251 (478)
..+|++++|+|..+..+.+.++|... +++-.+..|.... ..... ..........|+|+++++.++
T Consensus 75 ~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
T cd06433 75 TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICHQATFFRRSLF 154 (202)
T ss_pred CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccCcceEEEHHHH
Confidence 46999999999999988888877222 3344455554321 11000 001112345678899999998
Q ss_pred HHHHHhhhhhhcccccCCCchHHHHHHHHhcCCce
Q 044015 252 AELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPV 286 (478)
Q Consensus 252 ~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~L 286 (478)
+++.. ++. .+ ..++|..+..=+.+.|...
T Consensus 155 ~~~~~-f~~---~~--~~~~D~~~~~r~~~~g~~~ 183 (202)
T cd06433 155 EKYGG-FDE---SY--RIAADYDLLLRLLLAGKIF 183 (202)
T ss_pred HHhCC-Cch---hh--CchhhHHHHHHHHHcCCce
Confidence 88754 221 11 1356876665555666444
No 44
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=65.37 E-value=23 Score=32.95 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=28.1
Q ss_pred ccEEEEEcCcceechhHHHHHhcc-CCCCCCeEEeec
Q 044015 188 VRWFVLGDDDTVFFLENLVTVLGR-YDHNQMYYIGGN 223 (478)
Q Consensus 188 ~kWfv~~DDDTf~~~~nL~~~Ls~-yD~~ep~YIG~~ 223 (478)
.+|++++|+|..+.++.|..++.. .+....+..|..
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 115 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSR 115 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEee
Confidence 489999999999888888888876 455556666754
No 45
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=61.64 E-value=18 Score=37.84 Aligned_cols=99 Identities=15% Similarity=0.062 Sum_probs=67.9
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCCCCCCe-EEeecc--------CCC--Cc--------------ccccccccccc
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMY-YIGGNS--------ESV--EQ--------------DVIHSYTMAYG 240 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~-YIG~~s--------e~~--~~--------------~~~~g~~fa~G 240 (478)
...+++++.|.||....+.|.+++..++...-. +.|.+. ... .+ ....+.....+
T Consensus 136 ~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 215 (439)
T COG1215 136 AKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLS 215 (439)
T ss_pred cCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEc
Confidence 348999999999999999999999988654443 666551 100 00 00112234578
Q ss_pred CccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCC
Q 044015 241 GGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELG 291 (478)
Q Consensus 241 GaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~g 291 (478)
|++.++-+++++++......+ .++|..++.=+...|-.+...+.
T Consensus 216 G~~~~~rr~aL~~~g~~~~~~-------i~ED~~lt~~l~~~G~~~~~~~~ 259 (439)
T COG1215 216 GSSSAFRRSALEEVGGWLEDT-------ITEDADLTLRLHLRGYRVVYVPE 259 (439)
T ss_pred ceeeeEEHHHHHHhCCCCCCc-------eeccHHHHHHHHHCCCeEEEeec
Confidence 999999999999987433222 46899999888877765554433
No 46
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=60.81 E-value=19 Score=33.88 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=26.5
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeec
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGN 223 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~ 223 (478)
...+|++++|+|+.+.++.|.+.+..+.......+|..
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 120 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ 120 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence 35699999999999998777766654433333456654
No 47
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=59.12 E-value=23 Score=32.03 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=46.2
Q ss_pred ccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCcc--------------ccccccc-cccCccceecHHHHH
Q 044015 188 VRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQD--------------VIHSYTM-AYGGGGFAISYPLAA 252 (478)
Q Consensus 188 ~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~--------------~~~g~~f-a~GGaG~vLSr~Ll~ 252 (478)
.+|++++|+|.....+-|.++++.++....+.+|......... ...+... ..+|+.+++++.+++
T Consensus 81 ~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 81 GDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 4999999999998887777777776666777788765432110 0001111 245666789999999
Q ss_pred HHHH
Q 044015 253 ELVR 256 (478)
Q Consensus 253 ~L~~ 256 (478)
++..
T Consensus 161 ~i~~ 164 (181)
T cd04187 161 ALLL 164 (181)
T ss_pred HHHh
Confidence 8774
No 48
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=57.60 E-value=38 Score=33.67 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=59.2
Q ss_pred CCccEEEEEcCcceechhHHHHHhccC--CCC-----CCe-EEeeccC-CCCcc---c------cc------cccccccC
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRY--DHN-----QMY-YIGGNSE-SVEQD---V------IH------SYTMAYGG 241 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~y--D~~-----ep~-YIG~~se-~~~~~---~------~~------g~~fa~GG 241 (478)
.+.++++++|.|+.+.++.|.+++..+ ||+ -++ ++...+. ...+. . .. +....+.|
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 173 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWG 173 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccc
Confidence 567999999999999999999988876 442 111 1111100 00000 0 00 00112347
Q ss_pred ccceecHHHHHHHHHh--hhhhhccc-ccCCCchHHHHHHHHhcCCceeecC
Q 044015 242 GGFAISYPLAAELVRV--LDGCIDRY-ASFYGSDQKVQGCMAEIGVPVTKEL 290 (478)
Q Consensus 242 aG~vLSr~Ll~~L~~~--~~~C~~~~-~~~~~gD~~L~~Ci~~lGV~LT~~~ 290 (478)
+++++.+.+++++... +.+.. .+ .....+|..++..+...|-.+.-.+
T Consensus 174 ~~~~~Rr~al~~~~~~~~i~g~g-~~~~~~l~eD~~l~~~~~~~G~ri~~~~ 224 (254)
T cd04191 174 HNAIIRVAAFMEHCALPVLPGRP-PFGGHILSHDFVEAALMRRAGWEVRLAP 224 (254)
T ss_pred eEEEEEHHHHHHhcCCccccCCC-CCCCCeecHHHHHHHHHHHcCCEEEEcc
Confidence 8899999988775321 11111 11 1124589999999988786555444
No 49
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=56.93 E-value=14 Score=39.17 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=43.3
Q ss_pred CCCCCCCCeEEEEEecCccchHhHHHHHHHhccCCCcceEEEeecCCCCCCCCCCCCeeeCCCCC
Q 044015 93 NEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDTS 157 (478)
Q Consensus 93 ~~~~~~~s~IvFgI~Ts~k~~~~R~~~ik~Ww~~~~~r~~vfld~~~~~~~~~~lP~v~is~~~s 157 (478)
......-..|++.|.|+..++..|++.++.+|.+.+.++..|... . .+.+..+|.|..+..++
T Consensus 84 ~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~-~-s~~~~~f~~v~~~~~~g 146 (364)
T KOG2246|consen 84 ALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPT-L-SKDDSRFPTVYYNLPDG 146 (364)
T ss_pred hhccCCCceEEEEEEecCcCceeehhhhhcccccccCcceecCcc-C-CCCCCcCceeeccCCcc
Confidence 334566778999999999999999999988886654444444422 1 11345678777765543
No 50
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=56.70 E-value=45 Score=32.08 Aligned_cols=99 Identities=10% Similarity=-0.057 Sum_probs=55.2
Q ss_pred CccEEEEEcCcceechhHHHHHhccCC-CCCCeEEeeccCCCCc--c----ccc-------------cccc-cccCccce
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRYD-HNQMYYIGGNSESVEQ--D----VIH-------------SYTM-AYGGGGFA 245 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD-~~ep~YIG~~se~~~~--~----~~~-------------g~~f-a~GGaG~v 245 (478)
..+|++++|+|..+.++.|.+++..+. ..-.+.+|........ . ... +... ...|+-.+
T Consensus 93 ~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 172 (243)
T PLN02726 93 SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRL 172 (243)
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCcCCCcccc
Confidence 468999999999998888877777653 4456677765321100 0 000 0001 11233446
Q ss_pred ecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCC
Q 044015 246 ISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELG 291 (478)
Q Consensus 246 LSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~g 291 (478)
+++.+++++....+.. .+..|.+|..=+...|.++...|-
T Consensus 173 ~rr~~~~~i~~~~~~~------~~~~~~el~~~~~~~g~~i~~vp~ 212 (243)
T PLN02726 173 YKRSALEDLVSSVVSK------GYVFQMEIIVRASRKGYRIEEVPI 212 (243)
T ss_pred eeHHHHHHHHhhccCC------CcEEehHHHHHHHHcCCcEEEeCc
Confidence 7999988886532211 233455543323356766665543
No 51
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=55.66 E-value=21 Score=32.02 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=29.2
Q ss_pred ccEEEEEcCcceechhHHHHHhcc-CCCCCCeEEeecc
Q 044015 188 VRWFVLGDDDTVFFLENLVTVLGR-YDHNQMYYIGGNS 224 (478)
Q Consensus 188 ~kWfv~~DDDTf~~~~nL~~~Ls~-yD~~ep~YIG~~s 224 (478)
.+|++++|+|+.+.++.|.++++. .+....+.+|...
T Consensus 80 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~ 117 (185)
T cd04179 80 GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF 117 (185)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEee
Confidence 399999999999988888888886 4555666777654
No 52
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=54.89 E-value=17 Score=31.29 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=21.0
Q ss_pred CccEEEEEcCcceechhHHHHHhccC
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRY 212 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~y 212 (478)
+.+|++++|+|..+..+.|.+++..+
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~ 103 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPF 103 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHh
Confidence 68999999999999887777774433
No 53
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=51.98 E-value=24 Score=29.43 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=36.1
Q ss_pred CccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHHHHHHHh
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRV 257 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L~~~ 257 (478)
+.+|++++|+|..+.++.+..++..+-..+..- .+.|.+++++++..++++...
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~~~~~~~ 130 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEAD-----------------AVGGPGNLLFRRELLEEIGGF 130 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCce-----------------EEeccchheeeHHHHHHhCCc
Confidence 689999999999998887777643322111111 111227888999998887654
No 54
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=50.21 E-value=36 Score=33.91 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=20.5
Q ss_pred CccEEEEEcCcceechhHHHHHhccC
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRY 212 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~y 212 (478)
..+|++++|+|+.+...-|.++|+.+
T Consensus 83 ~gd~i~fLD~D~~~~~~wL~~ll~~l 108 (299)
T cd02510 83 TGDVLVFLDSHCEVNVGWLEPLLARI 108 (299)
T ss_pred cCCEEEEEeCCcccCccHHHHHHHHH
Confidence 46999999999999876666666544
No 55
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=48.22 E-value=32 Score=38.04 Aligned_cols=100 Identities=15% Similarity=-0.014 Sum_probs=58.1
Q ss_pred CCccEEEEEcCcceechhHHHHHhccCCCCC-----CeEEeeccCCCC----c-c-------------ccccccccccCc
Q 044015 186 GDVRWFVLGDDDTVFFLENLVTVLGRYDHNQ-----MYYIGGNSESVE----Q-D-------------VIHSYTMAYGGG 242 (478)
Q Consensus 186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~e-----p~YIG~~se~~~----~-~-------------~~~g~~fa~GGa 242 (478)
...+++++.|.|+.+.++.|..+- ...++. +++.+....... . . ...|.....+|.
T Consensus 157 ~~~d~vvi~DAD~~v~Pd~Lr~~~-~~~~~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gt 235 (504)
T PRK14716 157 IRFAIIVLHDAEDVIHPLELRLYN-YLLPRHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGV 235 (504)
T ss_pred CCcCEEEEEcCCCCcCccHHHHHH-hhcCCCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCe
Confidence 346999999999999988877543 222221 232221111100 0 0 001112235699
Q ss_pred cceecHHHHHHHHHhhhhh-hcccccCCCchHHHHHHHHhcCCceee
Q 044015 243 GFAISYPLAAELVRVLDGC-IDRYASFYGSDQKVQGCMAEIGVPVTK 288 (478)
Q Consensus 243 G~vLSr~Ll~~L~~~~~~C-~~~~~~~~~gD~~L~~Ci~~lGV~LT~ 288 (478)
|+++++.+++++.....+. .+ +....+|..|+.-+...|-+...
T Consensus 236 g~afRR~aLe~l~~~~GG~~fd--~~sLTED~dLglRL~~~G~rv~y 280 (504)
T PRK14716 236 GTAFSRRALERLAAERGGQPFD--SDSLTEDYDIGLRLKRAGFRQIF 280 (504)
T ss_pred eEEeEHHHHHHHHhhcCCCCCC--CCCcchHHHHHHHHHHCCCEEEE
Confidence 9999999999985421111 11 12256899999999888865444
No 56
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=47.36 E-value=22 Score=30.57 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCC-CCCeEEeec
Q 044015 175 RIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDH-NQMYYIGGN 223 (478)
Q Consensus 175 ~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~-~ep~YIG~~ 223 (478)
..+....++ -..+|++++|||+++..+.|.+++..++. .....+|..
T Consensus 68 ~~~n~~~~~--a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 68 AARNRGIKH--AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp HHHHHHHHH----SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccccc--cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 334444443 23459999999999997655555554443 333555554
No 57
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=42.49 E-value=1e+02 Score=31.85 Aligned_cols=99 Identities=10% Similarity=0.137 Sum_probs=58.3
Q ss_pred CccEEEEEcCcceechhHHHHHhccC----CCCCCeEEeeccCCCC----cccc-----------------ccccccccC
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRY----DHNQMYYIGGNSESVE----QDVI-----------------HSYTMAYGG 241 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~y----D~~ep~YIG~~se~~~----~~~~-----------------~g~~fa~GG 241 (478)
..+|++++|.|+...++.+.+++... ++.-.+.+|+...... .... .+..+..-.
T Consensus 162 ~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~D~~ 241 (333)
T PTZ00260 162 RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQ 241 (333)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 46899999999998876655555443 3455688998743110 0000 011223335
Q ss_pred ccc-eecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCC
Q 044015 242 GGF-AISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELG 291 (478)
Q Consensus 242 aG~-vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~g 291 (478)
.|+ ++++.+++.+.+... .+ .+.-|.++-..+...|.++...|-
T Consensus 242 ~Gfk~~~r~~~~~i~~~~~--~~----~~~fd~Ell~~a~~~g~~I~EvPv 286 (333)
T PTZ00260 242 CGFKLFTRETARIIFPSLH--LE----RWAFDIEIVMIAQKLNLPIAEVPV 286 (333)
T ss_pred CCeEEEeHHHHHHHhhhcc--cc----CccchHHHHHHHHHcCCCEEEEce
Confidence 564 789999988765321 11 234577776666677776655544
No 58
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=40.87 E-value=44 Score=34.38 Aligned_cols=70 Identities=10% Similarity=-0.037 Sum_probs=46.2
Q ss_pred CccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCcc--------------ccccccccccCccc-eecHHHH
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQD--------------VIHSYTMAYGGGGF-AISYPLA 251 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~--------------~~~g~~fa~GGaG~-vLSr~Ll 251 (478)
..+|++++|+|.-.+++.+.+++......-++..|........- ...+..+...++|+ ++++.++
T Consensus 90 ~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~~ 169 (325)
T PRK10714 90 TGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIV 169 (325)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHHH
Confidence 57999999999999998888888766443445555543211000 00122345667787 7899999
Q ss_pred HHHHH
Q 044015 252 AELVR 256 (478)
Q Consensus 252 ~~L~~ 256 (478)
+++..
T Consensus 170 ~~l~~ 174 (325)
T PRK10714 170 DAMLH 174 (325)
T ss_pred HHHHH
Confidence 99854
No 59
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=40.76 E-value=56 Score=37.55 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=60.5
Q ss_pred HHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCC-eEEeeccCCCC--------------cc---c-------
Q 044015 177 IKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQM-YYIGGNSESVE--------------QD---V------- 231 (478)
Q Consensus 177 l~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep-~YIG~~se~~~--------------~~---~------- 231 (478)
+.+..++ .+.+|+++.|.|+....+-|.+.+..+..+.. -.++.+..... ++ .
T Consensus 220 LN~al~~--a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~ 297 (713)
T TIGR03030 220 INNALKH--TDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQD 297 (713)
T ss_pred HHHHHHh--cCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHH
Confidence 4444442 35699999999999998888888877632222 23332210000 00 0
Q ss_pred ---cccccccccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCce
Q 044015 232 ---IHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPV 286 (478)
Q Consensus 232 ---~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~L 286 (478)
.++.. .+.|++.++.|.+++++...-.+ ...+|..++..+.+.|-+.
T Consensus 298 g~~~~~~~-~~~Gs~~~iRR~al~~iGGf~~~-------~vtED~~l~~rL~~~G~~~ 347 (713)
T TIGR03030 298 GNDFWNAA-FFCGSAAVLRREALDEIGGIAGE-------TVTEDAETALKLHRRGWNS 347 (713)
T ss_pred HHhhhCCe-eecCceeEEEHHHHHHcCCCCCC-------CcCcHHHHHHHHHHcCCeE
Confidence 00111 24578899999999886543211 1468999999998877553
No 60
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=40.30 E-value=83 Score=31.74 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=62.8
Q ss_pred HHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCC-eEEeeccCCCC----cc-c------------------
Q 044015 176 IIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQM-YYIGGNSESVE----QD-V------------------ 231 (478)
Q Consensus 176 ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep-~YIG~~se~~~----~~-~------------------ 231 (478)
.++++... ..+|+++.++||.+..+.|.++|+..+.... ..+|....... .. .
T Consensus 76 g~~~a~~~---~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (305)
T COG1216 76 GIKYALAK---GDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLE 152 (305)
T ss_pred HHHHHhcC---CCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceeccccc
Confidence 45555442 2229999999999988777777765543322 22222211000 00 0
Q ss_pred -cc-----ccccc-ccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCC
Q 044015 232 -IH-----SYTMA-YGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGF 292 (478)
Q Consensus 232 -~~-----g~~fa-~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gf 292 (478)
.. -...+ .-|+.+++++.+++++.. +++ ++ -.+.+|..++.=+..+|.++--.|..
T Consensus 153 ~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~-~de---~~-F~y~eD~D~~~R~~~~G~~i~~~p~a 215 (305)
T COG1216 153 IAPDLSSYLEVVASLSGACLLIRREAFEKVGG-FDE---RF-FIYYEDVDLCLRARKAGYKIYYVPDA 215 (305)
T ss_pred ccccccchhhhhhhcceeeeEEcHHHHHHhCC-CCc---cc-ceeehHHHHHHHHHHcCCeEEEeecc
Confidence 00 00112 467889999999998775 332 11 22568998877777889877665554
No 61
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=38.35 E-value=1.5e+02 Score=34.50 Aligned_cols=101 Identities=16% Similarity=0.012 Sum_probs=59.4
Q ss_pred CccEEEEEcCcceechhHHHHHhccCCCCCCeEEeec--cCCCC--------ccc--------------cccccccccCc
Q 044015 187 DVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGN--SESVE--------QDV--------------IHSYTMAYGGG 242 (478)
Q Consensus 187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~--se~~~--------~~~--------------~~g~~fa~GGa 242 (478)
..+-+++.|.|+.+-++.|. .++.+..... .+-.+ +.... +.. ..+.....+|.
T Consensus 155 ~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~-~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~ 232 (727)
T PRK11234 155 AFAGFILHDAEDVISPMELR-LFNYLVERKD-LIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGV 232 (727)
T ss_pred cccEEEEEcCCCCCChhHHH-HHHhhcCCCC-eEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCc
Confidence 45678899999999999997 3343332221 11111 10000 000 01223457799
Q ss_pred cceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecC
Q 044015 243 GFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKEL 290 (478)
Q Consensus 243 G~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~ 290 (478)
|+++||.+++.+.+.-+++. -......+|..||.=+...|......+
T Consensus 233 ~~af~Rr~l~al~~~ggg~~-~~~~~lTED~dlg~rL~~~G~~v~f~~ 279 (727)
T PRK11234 233 GTCFSRRAVTALLEDGDGIA-FDVQSLTEDYDIGFRLKEKGMREIFVR 279 (727)
T ss_pred eEEEecccHHHHHHhcCCCC-cCCCcchHHHHHHHHHHHCCCEEEEcc
Confidence 99999998877776543321 011224689999999998886654443
No 62
>PLN03181 glycosyltransferase; Provisional
Probab=36.11 E-value=3.3e+02 Score=29.66 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCC
Q 044015 174 ARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDH 214 (478)
Q Consensus 174 ~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~ 214 (478)
.++++++.. ..|+++||..+|.||+|--.++.-=|.+|+.
T Consensus 186 ipalRaAM~-a~PeAEWfWWLDsDALIMNp~~sLPl~ry~~ 225 (453)
T PLN03181 186 LPVVRAAML-AHPEAEWIWWVDSDAVFTDMDFKLPLHRYRD 225 (453)
T ss_pred HHHHHHHHH-HCCCceEEEEecCCceeecCCCCCCHhhcCC
Confidence 456666655 3799999999999999973322212455643
No 63
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=34.27 E-value=3e+02 Score=26.57 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=70.2
Q ss_pred EEEEEecCccchHhHHHHHHHhccCCCcceEEEeecCCCCC----C---CCCCCCeeeCCCCCccccccccCcchHHH-H
Q 044015 102 IVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKT----W---PATSPPYKVSQDTSRFQYTSWYGTRSAIR-I 173 (478)
Q Consensus 102 IvFgI~Ts~k~~~~R~~~ik~Ww~~~~~r~~vfld~~~~~~----~---~~~lP~v~is~~~s~~~yt~~~g~~s~~R-i 173 (478)
|.|.|.+.....+.-...++....+ ...-+|.+|...... . ....+.+.+..+ ++ ...+|..+.+. .
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~-~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~--r~--~v~WG~~S~v~A~ 75 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHP-DNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPK--RV--DVRWGGFSLVEAT 75 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--T-TSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS---------TTSHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCC-CCEEEEEEcCCCChHHHHHHHHhcccCCceeeccc--cc--ccccCCccHHHHH
Confidence 4566666444454445555555433 334568899873110 0 124456655432 22 12235555433 2
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCcceec--hhHHHHHhccCCCCCCeEEeeccCCCCcccccc----c---------ccc
Q 044015 174 ARIIKETFRLGLGDVRWFVLGDDDTVFF--LENLVTVLGRYDHNQMYYIGGNSESVEQDVIHS----Y---------TMA 238 (478)
Q Consensus 174 ~~ml~e~~~~~~p~~kWfv~~DDDTf~~--~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g----~---------~fa 238 (478)
+.+++++.+. .++.+||+++-.+.|-. .+.+.++|+..+....+.-+...+......... . .+.
T Consensus 76 l~ll~~al~~-~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 76 LNLLREALKR-DGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHH--S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHhc-CCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 4678888873 45899999999999888 578889998764333322222211110000000 0 124
Q ss_pred ccCccceecHHHHHHHHH
Q 044015 239 YGGGGFAISYPLAAELVR 256 (478)
Q Consensus 239 ~GGaG~vLSr~Ll~~L~~ 256 (478)
.|..=++||+.+++.|..
T Consensus 155 ~GSqW~~Ltr~~v~~il~ 172 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILD 172 (244)
T ss_dssp EE-S--EEEHHHHHHHHH
T ss_pred ccceeeEeeHHHHHHhhh
Confidence 566678899999999884
No 64
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=31.48 E-value=50 Score=32.68 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCcceec-h-hHHHHHhc
Q 044015 174 ARIIKETFRLGLGDVRWFVLGDDDTVFF-L-ENLVTVLG 210 (478)
Q Consensus 174 ~~ml~e~~~~~~p~~kWfv~~DDDTf~~-~-~nL~~~Ls 210 (478)
.++++++.. ..|+++|++.+|.|++|. + -.|.+.+-
T Consensus 64 ~~~lr~~m~-~~P~~~wv~~lD~Dali~n~~~~L~~~il 101 (239)
T PF05637_consen 64 IPALRAAMK-KYPEAEWVWWLDSDALIMNPDFSLEEHIL 101 (239)
T ss_dssp HHHHHHHHH-H-TT-SEEEEE-TTEEE------------
T ss_pred HHHHHHHHH-hCCCCCEEEEEcCCeEEEecccccccccc
Confidence 456676665 368999999999999998 3 24444443
No 65
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=30.98 E-value=1.2e+02 Score=32.47 Aligned_cols=37 Identities=8% Similarity=0.221 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCC
Q 044015 176 IIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDH 214 (478)
Q Consensus 176 ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~ 214 (478)
.+....+. .+.+|++++|+|+.+..+.|.++++.++.
T Consensus 122 AlN~gl~~--s~g~~v~~~DaD~~~~~d~L~~l~~~f~~ 158 (439)
T TIGR03111 122 ALNAAIYN--SIGKYIIHIDSDGKLHKDAIKNMVTRFEN 158 (439)
T ss_pred HHHHHHHH--ccCCEEEEECCCCCcChHHHHHHHHHHHh
Confidence 34444442 35689999999999998888888887753
No 66
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=28.88 E-value=1.9e+02 Score=33.44 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCccEEEEEcCcceechhHHHHHhccC
Q 044015 177 IKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRY 212 (478)
Q Consensus 177 l~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~y 212 (478)
+.+..+....+++++++.|.|+.+..+.|.+++..+
T Consensus 210 l~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m 245 (691)
T PRK05454 210 IADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLM 245 (691)
T ss_pred HHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 344444444678999999999999999999988776
No 67
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=22.13 E-value=1.4e+02 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=24.8
Q ss_pred CCCccEEEEEcCcceechhHHHHHhccCC
Q 044015 185 LGDVRWFVLGDDDTVFFLENLVTVLGRYD 213 (478)
Q Consensus 185 ~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD 213 (478)
..+.+|++++|.||.+..+.|.+++..++
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~ 99 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMD 99 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHH
Confidence 35789999999999999888888887764
No 68
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=21.70 E-value=1.1e+03 Score=25.76 Aligned_cols=153 Identities=11% Similarity=0.162 Sum_probs=81.7
Q ss_pred CCCeEEEEEecCccchHhHHHHHHHhccCCCcceEEEeecCCCCCCC-------------CCCCCeeeCCCCCccccccc
Q 044015 98 NVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWP-------------ATSPPYKVSQDTSRFQYTSW 164 (478)
Q Consensus 98 ~~s~IvFgI~Ts~k~~~~R~~~ik~Ww~~~~~r~~vfld~~~~~~~~-------------~~lP~v~is~~~s~~~yt~~ 164 (478)
..-.+.+-|..+.+.++.=...++.=..+. ..-+|-+|.+...... ...+.|.+....... +
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aLYhpr-N~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V--~-- 150 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRALYHPR-NQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLV--T-- 150 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHhcCCC-ceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceee--c--
Confidence 456778888877666555555555444442 3567788887532100 113455543322112 1
Q ss_pred cCcchHHH-HHHHHHHHHHhCCCCccEEEEEcCcceech--hHHHHHhccCCCCCCeEEeeccCCCC-------------
Q 044015 165 YGTRSAIR-IARIIKETFRLGLGDVRWFVLGDDDTVFFL--ENLVTVLGRYDHNQMYYIGGNSESVE------------- 228 (478)
Q Consensus 165 ~g~~s~~R-i~~ml~e~~~~~~p~~kWfv~~DDDTf~~~--~nL~~~Ls~yD~~ep~YIG~~se~~~------------- 228 (478)
+|..+.+. .+..++.+++. ..+.+||+.+-..-|-.. +.|++.+...+. ..-||...+....
T Consensus 151 WGG~S~V~AtL~~m~~LL~~-~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr-~~NFI~~~s~~~wk~~~r~~~~i~~p 228 (421)
T PLN03183 151 YRGPTMVANTLHACAILLKR-SKDWDWFINLSASDYPLVTQDDLIHTFSTLDR-NLNFIEHTSQLGWKEEKRAMPLIIDP 228 (421)
T ss_pred cCChHHHHHHHHHHHHHHhh-CCCCCEEEEccCCcccccCHHHHHHHHHhCCC-CceeeecccccccchhhhcceEEecC
Confidence 13323221 24566677763 578999999988877763 556665543322 2223433221100
Q ss_pred ----------------ccccccccccccCccceecHHHHHHHHHh
Q 044015 229 ----------------QDVIHSYTMAYGGGGFAISYPLAAELVRV 257 (478)
Q Consensus 229 ----------------~~~~~g~~fa~GGaG~vLSr~Ll~~L~~~ 257 (478)
.....++.+..|.+=++|||+.++-+...
T Consensus 229 gl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~ 273 (421)
T PLN03183 229 GLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWG 273 (421)
T ss_pred ceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhc
Confidence 00001234556667788999999988754
No 69
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=20.93 E-value=1.4e+02 Score=24.38 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=19.4
Q ss_pred CCCccEEEEEcCcceechh----HHHHHh
Q 044015 185 LGDVRWFVLGDDDTVFFLE----NLVTVL 209 (478)
Q Consensus 185 ~p~~kWfv~~DDDTf~~~~----nL~~~L 209 (478)
..+.+|.+++|-|-|+..+ +|.++|
T Consensus 69 ~~~~dWvl~~D~DEfl~~~~~~~~l~~~L 97 (97)
T PF13704_consen 69 AFDADWVLFLDADEFLVPPPGRRSLRDFL 97 (97)
T ss_pred CCCCCEEEEEeeeEEEecCCCCCCHHHhC
Confidence 3578999999999999853 466554
Done!