BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044019
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
          Length = 674

 Score = 29.6 bits (65), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 57  PLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVK 111
           PL    R+V +EL R   E  GLP DG I    D  ++   +   + C+ ++L+K
Sbjct: 289 PLGEQERAVILELKRAECERRGLPFDGRIR-AWDMRYYMNQVEETRYCVDQNLLK 342


>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
           Neurolysin Specificity In Neurotensin Cleavage Site
          Length = 674

 Score = 29.6 bits (65), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 57  PLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVK 111
           PL    R+V +EL R   E  GLP DG I    D  ++   +   + C+ ++L+K
Sbjct: 289 PLGEQERAVILELKRAECERRGLPFDGRIR-AWDMRYYMNQVEETRYCVDQNLLK 342


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,504,629
Number of Sequences: 62578
Number of extensions: 112675
Number of successful extensions: 193
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 3
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)