Query 044019
Match_columns 142
No_of_seqs 130 out of 657
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:32:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 68.9 17 0.00058 24.9 6.4 62 42-105 6-72 (107)
2 2vkp_A BTB/POZ domain-containi 57.9 17 0.00058 23.7 4.6 57 45-105 12-74 (109)
3 2al3_A TUG long isoform; TUG U 54.1 10 0.00034 26.4 3.0 36 44-81 12-47 (90)
4 1und_A Advillin, P92; actin bi 52.2 5.2 0.00018 23.5 1.1 19 59-77 1-19 (37)
5 1vd2_A Protein kinase C, IOTA 48.3 15 0.00051 25.3 3.1 35 49-87 15-49 (89)
6 1w8x_N Protein P31, protein C, 45.0 7.3 0.00025 28.4 1.1 28 40-67 86-123 (126)
7 2vpk_A Myoneurin; transcriptio 42.0 44 0.0015 22.1 4.7 48 51-105 31-83 (116)
8 1r29_A B-cell lymphoma 6 prote 34.8 52 0.0018 22.1 4.2 55 46-105 34-92 (127)
9 3drx_A BTB/POZ domain-containi 33.2 49 0.0017 25.9 4.2 63 41-105 11-78 (202)
10 2xko_C PIPX, global nitrogen r 29.1 6 0.0002 27.7 -1.5 15 58-72 4-18 (89)
11 3ga1_A Nucleus accumbens-assoc 28.9 77 0.0026 21.4 4.3 52 45-104 37-92 (129)
12 1yu8_X Villin; alpha helix, 3- 28.6 20 0.00068 23.6 1.1 20 59-78 31-50 (67)
13 2bkf_A Zinc-finger protein NBR 28.4 88 0.003 21.5 4.4 54 46-102 12-74 (87)
14 1z3x_A Putative cytidyltransfe 28.1 4.6 0.00016 32.7 -2.5 30 36-66 207-236 (238)
15 1ujs_A Actin-binding LIM prote 25.0 24 0.00083 24.4 1.0 20 59-78 46-65 (88)
16 1qzp_A Dematin; villin headpie 24.9 18 0.00061 23.8 0.3 20 59-78 32-51 (68)
17 1y6i_A Mg-chelatase cofactor G 23.9 9 0.00031 30.9 -1.6 30 36-67 199-229 (233)
18 2k6m_S Supervillin; SVHP, HP, 23.7 22 0.00075 23.3 0.6 20 59-78 31-50 (67)
19 1wj6_A KIAA0049 protein, RSGI 23.4 1.1E+02 0.0036 21.7 4.2 55 46-103 20-83 (101)
20 3ohu_A Transcription regulator 22.4 95 0.0032 20.7 3.7 53 46-104 37-93 (125)
21 2ccq_A P97, peptide N-glycanas 22.0 86 0.0029 21.5 3.5 42 61-102 46-96 (99)
22 1dd4_C 50S ribosomal protein L 22.0 55 0.0019 19.3 2.1 20 65-84 17-36 (40)
23 3b84_A Zinc finger and BTB dom 21.6 1.5E+02 0.0052 19.5 4.7 48 51-105 33-83 (119)
24 1zav_U 50S ribosomal protein L 20.8 49 0.0017 18.4 1.6 13 66-78 18-30 (30)
25 2if5_A Zinc finger and BTB dom 20.3 1.5E+02 0.0051 19.4 4.4 53 50-105 33-88 (120)
26 4ajy_C Transcription elongatio 20.3 1.4E+02 0.0049 19.5 4.2 53 49-102 9-63 (97)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=68.91 E-value=17 Score=24.89 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=44.9
Q ss_pred CeEEEEecCCeeeeeecccCC-cH--HHHHHHHhhhhhcC--CCCCCCeeecCcHHHHHHHHHHHhccC
Q 044019 42 GHFVVYTTDNTRFTVPLEYLS-RS--VFIELLRMSEEEFG--LPSDGPITLPCDSTFFKYVMSLVKGCI 105 (142)
Q Consensus 42 G~~~VyVGe~~RfvVp~~yL~-hp--~F~~LL~~seeEfG--~~~~G~L~iPC~~~~Fe~vl~~l~~~~ 105 (142)
..+.+-|| +++|.+..+-|. +| .|..|..... ++. .+.+|.+-|-.|...|++||.-++.+.
T Consensus 6 ~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~~-~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 6 KWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQADP-DLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTCG-GGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcCC-CCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 45667777 778988877664 33 6777654321 222 346799999999999999999999774
No 2
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=57.88 E-value=17 Score=23.74 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=40.6
Q ss_pred EEEecC---CeeeeeecccC--CcHHHHHHHHhhhhhcCCCCCCCeeec-CcHHHHHHHHHHHhccC
Q 044019 45 VVYTTD---NTRFTVPLEYL--SRSVFIELLRMSEEEFGLPSDGPITLP-CDSTFFKYVMSLVKGCI 105 (142)
Q Consensus 45 ~VyVGe---~~RfvVp~~yL--~hp~F~~LL~~seeEfG~~~~G~L~iP-C~~~~Fe~vl~~l~~~~ 105 (142)
.+.||+ +++|-+.-..| ..|.|+.++...-.|- . ..|.+| .+...|+.++.-+-.+.
T Consensus 12 ~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 12 HFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 445665 38999988888 6899999997543332 2 678887 68999999999887763
No 3
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=54.05 E-value=10 Score=26.43 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=27.9
Q ss_pred EEEEecCCeeeeeecccCCcHHHHHHHHhhhhhcCCCC
Q 044019 44 FVVYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPS 81 (142)
Q Consensus 44 ~~VyVGe~~RfvVp~~yL~hp~F~~LL~~seeEfG~~~ 81 (142)
+.|.-...+|+.|++ -..-.+.++|++|-+.|||+.
T Consensus 12 v~Vl~~n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 12 VSVLAPNGRRHTVKV--TPSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp EEEECTTSCEEEECC--CTTSBHHHHHHHHHHHTTCCG
T ss_pred EEEEcCCCcEEEEEE--CCCCCHHHHHHHHHHHhCCCh
Confidence 444445689999998 445578899999999999974
No 4
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=52.24 E-value=5.2 Score=23.53 Aligned_cols=19 Identities=26% Similarity=0.660 Sum_probs=17.3
Q ss_pred ccCCcHHHHHHHHhhhhhc
Q 044019 59 EYLSRSVFIELLRMSEEEF 77 (142)
Q Consensus 59 ~yL~hp~F~~LL~~seeEf 77 (142)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=48.27 E-value=15 Score=25.29 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=27.0
Q ss_pred cCCeeeeeecccCCcHHHHHHHHhhhhhcCCCCCCCeee
Q 044019 49 TDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPSDGPITL 87 (142)
Q Consensus 49 Ge~~RfvVp~~yL~hp~F~~LL~~seeEfG~~~~G~L~i 87 (142)
||-.|+-||. ...|.+|.++-.+-|++..+.++++
T Consensus 15 gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 15 GDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 6778888887 4689999999999999865444443
No 6
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=44.96 E-value=7.3 Score=28.39 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=18.8
Q ss_pred CCCeEEEEecCCeeee----------eecccCCcHHHH
Q 044019 40 NKGHFVVYTTDNTRFT----------VPLEYLSRSVFI 67 (142)
Q Consensus 40 pkG~~~VyVGe~~Rfv----------Vp~~yL~hp~F~ 67 (142)
..||||+.|-.+-+|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CcccceeeccchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 4799999997766665 688899988744
No 7
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=41.97 E-value=44 Score=22.10 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=37.6
Q ss_pred CeeeeeecccC--CcHHHHHHHHhhhhhcCCCCCCCeeec---CcHHHHHHHHHHHhccC
Q 044019 51 NTRFTVPLEYL--SRSVFIELLRMSEEEFGLPSDGPITLP---CDSTFFKYVMSLVKGCI 105 (142)
Q Consensus 51 ~~RfvVp~~yL--~hp~F~~LL~~seeEfG~~~~G~L~iP---C~~~~Fe~vl~~l~~~~ 105 (142)
+++|-+.-..| ..|.|+.++... .++.|.|+ .+...|+.++.-+-.+.
T Consensus 31 ~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 31 EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 56777777776 579999999764 35678887 78999999999887753
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=34.83 E-value=52 Score=22.06 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=41.1
Q ss_pred EEecCCeeeeeecccC--CcHHHHHHHHhhhhhcCCCCCCCeee-c-CcHHHHHHHHHHHhccC
Q 044019 46 VYTTDNTRFTVPLEYL--SRSVFIELLRMSEEEFGLPSDGPITL-P-CDSTFFKYVMSLVKGCI 105 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL--~hp~F~~LL~~seeEfG~~~~G~L~i-P-C~~~~Fe~vl~~l~~~~ 105 (142)
+.|| +++|-+.-..| ..|.|+.++.....| ....|.| + .+...|+.++.-+-.+.
T Consensus 34 l~v~-~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 34 IVVS-REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 3344 46777777777 689999999865554 4577899 4 68899999998887653
No 9
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=33.15 E-value=49 Score=25.88 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=44.2
Q ss_pred CCeEEEEecCCeeeeeecccCC-cH--HHHHHHHhhhhhcC--CCCCCCeeecCcHHHHHHHHHHHhccC
Q 044019 41 KGHFVVYTTDNTRFTVPLEYLS-RS--VFIELLRMSEEEFG--LPSDGPITLPCDSTFFKYVMSLVKGCI 105 (142)
Q Consensus 41 kG~~~VyVGe~~RfvVp~~yL~-hp--~F~~LL~~seeEfG--~~~~G~L~iPC~~~~Fe~vl~~l~~~~ 105 (142)
...+.+-|| +.||.+..+-|. +| .|..|...- .++. .+.+|.+-|-.|...|++||..++.+.
T Consensus 11 ~~~V~LNVG-G~~F~Tt~sTL~r~PdS~L~~lfs~~-~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~ 78 (202)
T 3drx_A 11 SKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 78 (202)
T ss_dssp CCEEEEEET-TEEEEEETTGGGSCTTSSTHHHHSCC-CC----BCTTCCEEECSCSTTHHHHHHHHHHSC
T ss_pred CCEEEEEEC-CEEEEEeHHHHhCCCcchHHHHhcCc-cccCcccCCCccEEecCChHHHHHHHHHhcCCc
Confidence 346677787 688999887764 34 566664321 1232 346799999999999999999998763
No 10
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=29.10 E-value=6 Score=27.72 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=11.2
Q ss_pred cccCCcHHHHHHHHh
Q 044019 58 LEYLSRSVFIELLRM 72 (142)
Q Consensus 58 ~~yL~hp~F~~LL~~ 72 (142)
-.|||||.|.-|-.-
T Consensus 4 E~YLNHPtFGlLy~V 18 (89)
T 2xko_C 4 ENYLNHPTFGLLYQI 18 (89)
T ss_dssp CCEEEETTTEEEEEE
T ss_pred cccccCCccchhhee
Confidence 359999999876543
No 11
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=28.89 E-value=77 Score=21.37 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=38.9
Q ss_pred EEEecCCeeeeeecccCC--cHHHHHHHHhhhhhcCCCCCCCeeec--CcHHHHHHHHHHHhcc
Q 044019 45 VVYTTDNTRFTVPLEYLS--RSVFIELLRMSEEEFGLPSDGPITLP--CDSTFFKYVMSLVKGC 104 (142)
Q Consensus 45 ~VyVGe~~RfvVp~~yL~--hp~F~~LL~~seeEfG~~~~G~L~iP--C~~~~Fe~vl~~l~~~ 104 (142)
.+.|| +++|-+.-..|. .|.|++++... ....|.|| .+...|+.++.-+-.+
T Consensus 37 ~l~v~-~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 37 SVVVK-GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEET-TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred EEEEC-CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 33444 566766666664 69999999875 45678996 8999999999988765
No 12
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=28.60 E-value=20 Score=23.58 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=18.5
Q ss_pred ccCCcHHHHHHHHhhhhhcC
Q 044019 59 EYLSRSVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~seeEfG 78 (142)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 13
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=28.35 E-value=88 Score=21.51 Aligned_cols=54 Identities=9% Similarity=0.287 Sum_probs=38.0
Q ss_pred EEecCCeeeeeecccCCcHHHHHHHHhhhhhcCCC--------C-CCCeeecCcHHHHHHHHHHHh
Q 044019 46 VYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLP--------S-DGPITLPCDSTFFKYVMSLVK 102 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL~hp~F~~LL~~seeEfG~~--------~-~G~L~iPC~~~~Fe~vl~~l~ 102 (142)
-|-||-+||.| +++.+|.|.+|-.+-..-||+. . +..|+|.=+.. |+.++....
T Consensus 12 ~f~ge~~rf~v--s~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E-~eEAlkva~ 74 (87)
T 2bkf_A 12 TFKNEIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGE-YEEALKMAV 74 (87)
T ss_dssp EETTEEEEEEE--SCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHH-HHHHHHHHH
T ss_pred EEcCCeeEEEe--ccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHH-HHHHHHHhc
Confidence 45688888865 6888999999999999999964 2 34567766544 444444433
No 14
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=28.11 E-value=4.6 Score=32.70 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=19.3
Q ss_pred CcCCCCCeEEEEecCCeeeeeecccCCcHHH
Q 044019 36 SSVANKGHFVVYTTDNTRFTVPLEYLSRSVF 66 (142)
Q Consensus 36 ~~~vpkG~~~VyVGe~~RfvVp~~yL~hp~F 66 (142)
+..+|+||+|+.-.= +=.-+=.++|+||.|
T Consensus 207 sl~AP~GHLP~~~~l-rGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQL-RGVQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCCCT-TCSHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCccc-ccHHHHHHHHcCccc
Confidence 457999999986421 112234567888876
No 15
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=24.96 E-value=24 Score=24.38 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.7
Q ss_pred ccCCcHHHHHHHHhhhhhcC
Q 044019 59 EYLSRSVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~seeEfG 78 (142)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 16
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=24.94 E-value=18 Score=23.77 Aligned_cols=20 Identities=45% Similarity=0.612 Sum_probs=18.4
Q ss_pred ccCCcHHHHHHHHhhhhhcC
Q 044019 59 EYLSRSVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~seeEfG 78 (142)
.||+.-.|++++.|+.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999983
No 17
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=23.92 E-value=9 Score=30.89 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=20.9
Q ss_pred CcCCCCCeEEEEecC-CeeeeeecccCCcHHHH
Q 044019 36 SSVANKGHFVVYTTD-NTRFTVPLEYLSRSVFI 67 (142)
Q Consensus 36 ~~~vpkG~~~VyVGe-~~RfvVp~~yL~hp~F~ 67 (142)
+..+|+||+|+.-.= +-| +=..+|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 456999999986532 233 445688999884
No 18
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=23.68 E-value=22 Score=23.33 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.6
Q ss_pred ccCCcHHHHHHHHhhhhhcC
Q 044019 59 EYLSRSVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~seeEfG 78 (142)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 19
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.41 E-value=1.1e+02 Score=21.71 Aligned_cols=55 Identities=9% Similarity=0.278 Sum_probs=38.4
Q ss_pred EEecCCeeeeeecccCCcHHHHHHHHhhhhhcCCC--------CC-CCeeecCcHHHHHHHHHHHhc
Q 044019 46 VYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLP--------SD-GPITLPCDSTFFKYVMSLVKG 103 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL~hp~F~~LL~~seeEfG~~--------~~-G~L~iPC~~~~Fe~vl~~l~~ 103 (142)
-|-||-+||.| +++.++.|.+|-.+...-||+. .| ..|+|.=+.+ |+.++.+..+
T Consensus 20 ~f~ge~~rF~V--s~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~E-~eEAlkva~k 83 (101)
T 1wj6_A 20 TFKNEIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGE-YEEALKMAVK 83 (101)
T ss_dssp EETTEEEEEEE--SCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHHH-HHHHHHHHHH
T ss_pred EEcCCeeEEEe--cCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHHH-HHHHHHHhcc
Confidence 45688899875 7889999999999999999964 23 4466665444 4444444443
No 20
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=22.42 E-value=95 Score=20.65 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=38.3
Q ss_pred EEecCCeeeeeecccCC--cHHHHHHHHhhhhhcCCCCCCCeeec--CcHHHHHHHHHHHhcc
Q 044019 46 VYTTDNTRFTVPLEYLS--RSVFIELLRMSEEEFGLPSDGPITLP--CDSTFFKYVMSLVKGC 104 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL~--hp~F~~LL~~seeEfG~~~~G~L~iP--C~~~~Fe~vl~~l~~~ 104 (142)
+.|| +++|-+.-..|. .|.|++++.....| +..|.+| .+...|+.++.-+-.+
T Consensus 37 l~v~-~~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 37 LIVE-RKEFRAHRAVLAACSEYFWQALVGQTKN-----DLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEET-TEEEEECHHHHHHHBHHHHHHHTTCCCS-----SCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred EEEC-CEEEechHHHHHHcCHHHHHHhcCCCCC-----CcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 3344 456666666664 69999999764333 4668886 7999999999988765
No 21
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=22.04 E-value=86 Score=21.50 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=28.5
Q ss_pred CCcHHHHHHHHhhh------hhcCCC-CCCCeeec--CcHHHHHHHHHHHh
Q 044019 61 LSRSVFIELLRMSE------EEFGLP-SDGPITLP--CDSTFFKYVMSLVK 102 (142)
Q Consensus 61 L~hp~F~~LL~~se------eEfG~~-~~G~L~iP--C~~~~Fe~vl~~l~ 102 (142)
+++|.|++=+...+ +..||. .++.+.+| .+....+++..+|.
T Consensus 46 ~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~ 96 (99)
T 2ccq_A 46 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIA 96 (99)
T ss_dssp TTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHH
Confidence 78899988665433 345996 45669987 66666666666654
No 22
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=22.02 E-value=55 Score=19.30 Aligned_cols=20 Identities=30% Similarity=0.664 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhhcCCCCCCC
Q 044019 65 VFIELLRMSEEEFGLPSDGP 84 (142)
Q Consensus 65 ~F~~LL~~seeEfG~~~~G~ 84 (142)
-..+|.+.-||+||.+...|
T Consensus 17 E~~eLvk~leekfGVsaaa~ 36 (40)
T 1dd4_C 17 ELAELVKKLEDKFGVTAAAP 36 (40)
T ss_dssp HHHHHHHHHHHHTCCCSCC-
T ss_pred HHHHHHHHHHHHHCCCcccc
Confidence 35689999999999876544
No 23
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=21.60 E-value=1.5e+02 Score=19.55 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=36.3
Q ss_pred CeeeeeecccC--CcHHHHHHHHhhhhhcCCCCCCCeeec-CcHHHHHHHHHHHhccC
Q 044019 51 NTRFTVPLEYL--SRSVFIELLRMSEEEFGLPSDGPITLP-CDSTFFKYVMSLVKGCI 105 (142)
Q Consensus 51 ~~RfvVp~~yL--~hp~F~~LL~~seeEfG~~~~G~L~iP-C~~~~Fe~vl~~l~~~~ 105 (142)
+++|-+.-..| ..|.|++++.... .+.|.|| .+...|+.++.-+-.+.
T Consensus 33 ~~~f~aHk~vLaa~S~yF~~~f~~~~-------~~~i~l~~~~~~~f~~ll~~iYtg~ 83 (119)
T 3b84_A 33 GLVFKAHWSVLACCSHFFQSLYGDGS-------GGSVVLPAGFAEIFGLLLDFFYTGH 83 (119)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTTTT-------CCCEEECGGGHHHHHHHHHHHHHSC
T ss_pred CEEEEeeHHHHhhcCHHHHHHHCCCC-------CCeEEeCCCCHHHHHHHHHHHcCCC
Confidence 46777766666 4799999987532 5689998 56889999999887663
No 24
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=20.84 E-value=49 Score=18.36 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=10.6
Q ss_pred HHHHHHhhhhhcC
Q 044019 66 FIELLRMSEEEFG 78 (142)
Q Consensus 66 F~~LL~~seeEfG 78 (142)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899987
No 25
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=20.34 E-value=1.5e+02 Score=19.41 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=37.1
Q ss_pred CCeeeeeecccC--CcHHHHHHHHhhhhhcCCCCCCCeeec-CcHHHHHHHHHHHhccC
Q 044019 50 DNTRFTVPLEYL--SRSVFIELLRMSEEEFGLPSDGPITLP-CDSTFFKYVMSLVKGCI 105 (142)
Q Consensus 50 e~~RfvVp~~yL--~hp~F~~LL~~seeEfG~~~~G~L~iP-C~~~~Fe~vl~~l~~~~ 105 (142)
++++|-+.-..| ..|.|++++.....| .....|.++ .+...|+.++.-+-.+.
T Consensus 33 ~~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 33 EGREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp TTEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred CCEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 356777777777 479999999754333 234668888 68999999998887664
No 26
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=20.31 E-value=1.4e+02 Score=19.51 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=36.2
Q ss_pred cCCeeeeeecccC-CcHHHHHHHHhhhhhcCCCCCCCeeec-CcHHHHHHHHHHHh
Q 044019 49 TDNTRFTVPLEYL-SRSVFIELLRMSEEEFGLPSDGPITLP-CDSTFFKYVMSLVK 102 (142)
Q Consensus 49 Ge~~RfvVp~~yL-~hp~F~~LL~~seeEfG~~~~G~L~iP-C~~~~Fe~vl~~l~ 102 (142)
.|++.|.|+-... ..+.|+.+++.... +.=..+++|.|| -+...++.|+.-..
T Consensus 9 sDg~~F~v~r~vA~~S~~ik~m~~~~~~-~~E~~~~~I~l~~V~~~iL~kViey~~ 63 (97)
T 4ajy_C 9 SDGHEFIVKREHALTSGTIKAMLSGPGQ-FAENETNEVNFREIPSHVLSKVCMYFT 63 (97)
T ss_dssp TTCCEEEEEHHHHTTSHHHHHHHCCC---------CEEECTTSCHHHHHHHHHHHH
T ss_pred cCCcEEEecHHHHHHhHHHHHHHHhCCC-ccccCCCceECCCCCHHHHHHHHHHHH
Confidence 5789999987764 47899999874210 000246788888 78899999997766
Done!