Query 044019
Match_columns 142
No_of_seqs 130 out of 657
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 18:32:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044019.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044019hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y6ia2 a.261.1.1 (A:83-233) M 60.0 0.41 3E-05 34.6 -1.8 31 36-68 117-148 (151)
2 d1z3xa2 a.261.1.1 (A:88-235) G 56.6 0.38 2.8E-05 34.6 -2.5 30 36-66 117-146 (148)
3 d1unda_ a.14.1.1 (A:) Advillin 52.7 2.4 0.00017 23.5 1.1 18 60-77 1-18 (36)
4 d2bkfa1 d.15.2.2 (A:1-85) Next 50.2 7.3 0.00053 25.2 3.4 48 47-96 11-67 (85)
5 d2al3a1 d.15.1.2 (A:10-85) Tet 39.6 11 0.00081 23.8 3.0 37 43-81 2-38 (76)
6 d1fc4a_ c.67.1.4 (A:) 2-amino- 34.3 21 0.0015 27.4 4.5 36 46-81 39-79 (401)
7 d1yu5x1 a.14.1.1 (X:10-76) Vil 30.1 8.5 0.00062 23.9 1.1 19 59-77 31-49 (67)
8 d2r85a1 c.30.1.8 (A:1-99) 5-fo 29.5 1 7.3E-05 30.5 -3.8 23 36-58 64-88 (99)
9 d1ip9a_ d.15.2.2 (A:) Bud emer 26.0 31 0.0023 21.3 3.4 43 49-95 21-72 (85)
10 d1tjya_ c.93.1.1 (A:) AI-2 rec 25.5 27 0.0019 24.0 3.3 31 49-79 1-34 (316)
11 d1ujsa_ a.14.1.1 (A:) Actin-bi 23.6 13 0.00092 24.3 1.0 20 59-78 46-65 (88)
12 d1qzpa_ a.14.1.1 (A:) Dematin 23.0 9.6 0.0007 23.7 0.3 19 59-77 32-50 (68)
13 d2pbza1 c.30.1.8 (A:4-99) 5-fo 22.5 1.7 0.00012 29.2 -3.7 23 36-58 59-83 (96)
14 d1yu8x1 a.14.1.1 (X:42-76) Vil 22.4 15 0.0011 20.0 1.0 17 61-77 1-17 (35)
No 1
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=60.00 E-value=0.41 Score=34.56 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=20.9
Q ss_pred CcCCCCCeEEEEecCC-eeeeeecccCCcHHHHH
Q 044019 36 SSVANKGHFVVYTTDN-TRFTVPLEYLSRSVFIE 68 (142)
Q Consensus 36 ~~~vpkG~~~VyVGe~-~RfvVp~~yL~hp~F~~ 68 (142)
+..+|+||+|+.-.-+ -| +=-..|+||+|.+
T Consensus 117 ~l~AP~GHLP~~~~lrG~~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 117 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWSQ 148 (151)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHHH
T ss_pred cCCCCCCCCCccchhhhHH--HHHHHHcCcchhh
Confidence 4568999999864322 22 3334899999864
No 2
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=56.58 E-value=0.38 Score=34.60 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=19.9
Q ss_pred CcCCCCCeEEEEecCCeeeeeecccCCcHHH
Q 044019 36 SSVANKGHFVVYTTDNTRFTVPLEYLSRSVF 66 (142)
Q Consensus 36 ~~~vpkG~~~VyVGe~~RfvVp~~yL~hp~F 66 (142)
+..+|+||+|+. +..+-.-|=-..|+||.|
T Consensus 117 ~l~AP~GHLP~~-~~lrg~~~~~~~l~h~a~ 146 (148)
T d1z3xa2 117 DLSAPRGHLPLT-NQLRGVQVLNALLNHPAW 146 (148)
T ss_dssp STTSCTTCCSCC-CCTTCSHHHHHHHTCGGG
T ss_pred cCCCCCCCCCcC-CccchHHHHHHHhcCccc
Confidence 456999999974 443334444567788776
No 3
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.72 E-value=2.4 Score=23.55 Aligned_cols=18 Identities=28% Similarity=0.687 Sum_probs=17.0
Q ss_pred cCCcHHHHHHHHhhhhhc
Q 044019 60 YLSRSVFIELLRMSEEEF 77 (142)
Q Consensus 60 yL~hp~F~~LL~~seeEf 77 (142)
||+.-.|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 799999999999999998
No 4
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.21 E-value=7.3 Score=25.19 Aligned_cols=48 Identities=10% Similarity=0.279 Sum_probs=34.4
Q ss_pred EecCCeeeeeecccCCcHHHHHHHHhhhhhcCCC--------CC-CCeeecCcHHHHHH
Q 044019 47 YTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLP--------SD-GPITLPCDSTFFKY 96 (142)
Q Consensus 47 yVGe~~RfvVp~~yL~hp~F~~LL~~seeEfG~~--------~~-G~L~iPC~~~~Fe~ 96 (142)
|-||-+||.++.. +++.|.+|..+-+.-||++ .| .-++|.|++++=|-
T Consensus 11 f~~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~ 67 (85)
T d2bkfa1 11 FKNEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEA 67 (85)
T ss_dssp ETTEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHH
T ss_pred ECCceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHH
Confidence 4467899998543 4677899999999888852 23 34789999876543
No 5
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.64 E-value=11 Score=23.82 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.9
Q ss_pred eEEEEecCCeeeeeecccCCcHHHHHHHHhhhhhcCCCC
Q 044019 43 HFVVYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPS 81 (142)
Q Consensus 43 ~~~VyVGe~~RfvVp~~yL~hp~F~~LL~~seeEfG~~~ 81 (142)
++.|..-..+|..|++. -.-...+.|+.|-+.|||+.
T Consensus 2 ~V~Vl~~~~rR~~VKvt--P~t~l~~VL~eaC~k~~~~~ 38 (76)
T d2al3a1 2 AVSVLAPNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNP 38 (76)
T ss_dssp CEEEECTTSCEEEECCC--TTSBHHHHHHHHHHHTTCCG
T ss_pred cEEEECCCCcEEEEEeC--CCcCHHHHHHHHHHHhCCCh
Confidence 45666667899999884 34467889999999999974
No 6
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=34.30 E-value=21 Score=27.43 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=27.8
Q ss_pred EEecCCeeee--eecccCC---cHHHHHHHHhhhhhcCCCC
Q 044019 46 VYTTDNTRFT--VPLEYLS---RSVFIELLRMSEEEFGLPS 81 (142)
Q Consensus 46 VyVGe~~Rfv--Vp~~yL~---hp~F~~LL~~seeEfG~~~ 81 (142)
|.+.|+++|+ ..-+||+ ||.+++....+-+.||...
T Consensus 39 v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~ 79 (401)
T d1fc4a_ 39 ITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGM 79 (401)
T ss_dssp EEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCC
T ss_pred EEecCCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCc
Confidence 4556778886 3446764 9999999999999999654
No 7
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=30.06 E-value=8.5 Score=23.85 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=18.0
Q ss_pred ccCCcHHHHHHHHhhhhhc
Q 044019 59 EYLSRSVFIELLRMSEEEF 77 (142)
Q Consensus 59 ~yL~hp~F~~LL~~seeEf 77 (142)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 5999999999999999998
No 8
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=29.52 E-value=1 Score=30.52 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=17.6
Q ss_pred CcCCCCCeEEEEec-CC-eeeeeec
Q 044019 36 SSVANKGHFVVYTT-DN-TRFTVPL 58 (142)
Q Consensus 36 ~~~vpkG~~~VyVG-e~-~RfvVp~ 58 (142)
..-+|.|.|++|+| |+ +.|.||+
T Consensus 64 ~I~IPhgSfv~Y~G~d~ie~~~VP~ 88 (99)
T d2r85a1 64 AVVVPTGSFVAHLGIELVENMKVPY 88 (99)
T ss_dssp EEECCCTTHHHHHCHHHHHTCCSCB
T ss_pred EEEecCCCEEEEEcHHHHhcCCCCc
Confidence 55699999999999 32 3477775
No 9
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.96 E-value=31 Score=21.26 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=30.7
Q ss_pred cCCeeeeeecccCCcHHHHHHHHhhhhhcCC--------CCCC-CeeecCcHHHHH
Q 044019 49 TDNTRFTVPLEYLSRSVFIELLRMSEEEFGL--------PSDG-PITLPCDSTFFK 95 (142)
Q Consensus 49 Ge~~RfvVp~~yL~hp~F~~LL~~seeEfG~--------~~~G-~L~iPC~~~~Fe 95 (142)
+|-.||.||.. .-|.+|.++-++.|+. +.|| .++|-||.++=+
T Consensus 21 ~D~~~~~l~~~----it~~dL~~kI~~rf~~~~~~lkY~Dedgd~v~i~sD~Dl~~ 72 (85)
T d1ip9a_ 21 DDIFALMLKGD----TTYKELRSKIAPRIDTDNFKLQTKLFDGSGEEIKTDSQVSN 72 (85)
T ss_dssp TCCEEEEECSC----CCHHHHHHHHHHHHTSSCEEEEECCSSSCCSCCCSHHHHHH
T ss_pred CcEEEEEeCCC----CCHHHHHHHHHHHhCCCceEEEEEcCCCCEEEEeCHHHHHH
Confidence 35799999865 3488999988888863 2333 468889887643
No 10
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=25.49 E-value=27 Score=24.03 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=22.8
Q ss_pred cCCeeeeeecccCCcHHHHHHHHh---hhhhcCC
Q 044019 49 TDNTRFTVPLEYLSRSVFIELLRM---SEEEFGL 79 (142)
Q Consensus 49 Ge~~RfvVp~~yL~hp~F~~LL~~---seeEfG~ 79 (142)
|..+|..+=+..++||.|.++.+- +.+++|+
T Consensus 1 G~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~ 34 (316)
T d1tjya_ 1 GSAERIAFIPKLVGVGFFTSGGNGAQEAGKALGI 34 (316)
T ss_dssp CCCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 345666666888999999999755 4457776
No 11
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.57 E-value=13 Score=24.25 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.5
Q ss_pred ccCCcHHHHHHHHhhhhhcC
Q 044019 59 EYLSRSVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~seeEfG 78 (142)
.||+.--|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T d1ujsa_ 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 58999999999999999984
No 12
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.00 E-value=9.6 Score=23.69 Aligned_cols=19 Identities=42% Similarity=0.529 Sum_probs=18.0
Q ss_pred ccCCcHHHHHHHHhhhhhc
Q 044019 59 EYLSRSVFIELLRMSEEEF 77 (142)
Q Consensus 59 ~yL~hp~F~~LL~~seeEf 77 (142)
.||+.--|++++.|+.+||
T Consensus 32 ~yLsd~dF~~vFgms~~eF 50 (68)
T d1qzpa_ 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 13
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=22.53 E-value=1.7 Score=29.21 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=17.3
Q ss_pred CcCCCCCeEEEEec-CC-eeeeeec
Q 044019 36 SSVANKGHFVVYTT-DN-TRFTVPL 58 (142)
Q Consensus 36 ~~~vpkG~~~VyVG-e~-~RfvVp~ 58 (142)
..-+|.|.|++|+| |+ +.+.||+
T Consensus 59 aI~IPhgSfv~Y~G~~~ie~~~VP~ 83 (96)
T d2pbza1 59 GIVVPHGSFVAYLGIEAIEKAKARF 83 (96)
T ss_dssp SBCCCBTTHHHHSCHHHHHTCCSCC
T ss_pred eEEEcCCCEEEEecHHHHhhCCCCc
Confidence 66799999999999 32 4566654
No 14
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.37 E-value=15 Score=19.97 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHhhhhhc
Q 044019 61 LSRSVFIELLRMSEEEF 77 (142)
Q Consensus 61 L~hp~F~~LL~~seeEf 77 (142)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vfgmsr~eF 17 (35)
T d1yu8x1 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp SCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56778999999999987
Done!