BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044020
(563 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 205 bits (522), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 193/624 (30%), Positives = 285/624 (45%), Gaps = 85/624 (13%)
Query: 1 MVTAISDYKQSLQFRDLDREKKKIFIQ---VTRDGQRQKVCTYDLVVGDIVHLSIGDQVP 57
+VT Y Q + ++ K + Q V RDG + ++ LVVGD+V + GD+VP
Sbjct: 151 VVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVP 210
Query: 58 AYGIFISGHSLLIDESSLSGQSEPRY----MYEENPF-----LLAGTKVQGGSGKMLVTT 108
A + +D SSL+G+SEP+ E+P T G+ + LV
Sbjct: 211 ADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVN 270
Query: 109 VGMRTEWGKLMETLNEGGEDE-TPLQVKLNGVATIIGKIXXXXXXXXXXXXIGRFLGEKV 167
G RT G++ +L G E+E TP+ +++ II + F+
Sbjct: 271 TGDRTIIGRI-ASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATF-------FIVAMC 322
Query: 168 IHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHL 227
I F ++ + A+VV VPEGL VT+ L+ K+L + +V++L
Sbjct: 323 IGYTFLR-------AMVFFMAIVVAY----VPEGLLATVTVCLSLTAKRLASKNCVVKNL 371
Query: 228 SACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNV---EGNNRKDILQSEISE--- 281
A ET+GS S IC+DKT LT N M V +W N I + E + + QS +
Sbjct: 372 EAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRAL 431
Query: 282 -RVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFKIVK 340
RVL + +A F+ +G V K ++G +E+A+L+F G+ R F V
Sbjct: 432 CRVLTLCNRAAFK-SGQDAVPVP--KRIVIGDASETALLKFSELTLGNAMGYRERFPKVC 488
Query: 341 VEPFNSVRKKMSVLIAL--PAGGMRAFC-KGASEIVLSMCDKVVSDNGEPVPLSE---EQ 394
PFNS K + L P KGA E VL C ++ G+ +PL E E
Sbjct: 489 EIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILI-KGQELPLDEQWREA 547
Query: 395 FRNITDVINGFASEALR--TLCLAFKDLNDSSNEN----NIPDSGYTLIAVVGIKDPVRP 448
F+ + G L L L+ KD + N P SG + +V + DP R
Sbjct: 548 FQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRA 607
Query: 449 GVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVE--------------- 493
V +AV C AGI V MVTGD+ TA+AIA GI++ E VE
Sbjct: 608 TVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNR 667
Query: 494 ---------GPEFRNMSPADIIPKLQ-----VMARSLPSDKHTLVTQLRNTFGEVVAVTG 539
G + ++M P++++ L+ V AR+ P K +V + G +VAVTG
Sbjct: 668 KDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQR-LGAIVAVTG 726
Query: 540 DGTNDASALHEADIGLAMGIAGTE 563
DG ND+ AL +ADIG+AMGIAG++
Sbjct: 727 DGVNDSPALKKADIGVAMGIAGSD 750
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 198 bits (504), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 191/620 (30%), Positives = 280/620 (45%), Gaps = 92/620 (14%)
Query: 14 FRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPA--YGIFISGHSLLID 71
++ + E K++ + QR K D+V GDIV +++GD+VPA + I +L +D
Sbjct: 120 LKEYEPEMGKVYRADRKSVQRIK--ARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVD 177
Query: 72 ESSLSGQS-----------EPRYMYEENP-FLLAGTKVQGGSGKMLVTTVGMRTEWGKLM 119
+S L+G+S +PR + ++ L +GT + G +V T G+ TE GK+
Sbjct: 178 QSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIR 237
Query: 120 ETLNEGGEDETPLQVKLNGVATIIGKIXXXXXXXXXXXXIGRFLGEKVIHNEFTDWSSAD 179
+ + +D+TPLQ KL+ + K+ IG F +H W
Sbjct: 238 DQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHG--GSWIRG- 292
Query: 180 ALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCI 239
I YF + V + A+PEGLP +T LA +++ A+VR L + ET+G S I
Sbjct: 293 ---AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 349
Query: 240 CTDKTRMLTTNHMVVDKIWIANTISNVEGN----------------------NRKDILQS 277
C+DKT LTTN M V K++I I V+G+ N K I
Sbjct: 350 CSDKTGTLTTNQMSVCKMFI---IDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSG 406
Query: 278 EISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFK 337
+ V T+ A+ N S + G +G TE+A+ ++ R K
Sbjct: 407 QFDGLVELATICALC-NDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSK 465
Query: 338 IVKVEPFNSV----------------RKKMSVLIALPAGGMRA------FCKGASEIVLS 375
+ + NSV RK MSV + PA RA F KGA E V+
Sbjct: 466 VERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCS-PAKSSRAAVGNKMFVKGAPEGVID 524
Query: 376 MCDKVVSDNGEPVPLSEEQFRNITDVIN--GFASEALRTLCLAFKDLNDSSNENNIPDSG 433
C+ V VP++ I VI G + LR L LA +D E + DS
Sbjct: 525 RCNYVRVGTTR-VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSS 583
Query: 434 --------YTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485
T + VVG+ DP R V ++Q C +AGI V M+TGDN TA AI + GI
Sbjct: 584 RFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 643
Query: 486 TSDGE----AVEGPEFRNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVT 538
+ E A G EF ++ A + + AR PS K +V L+ ++ E+ A+T
Sbjct: 644 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQ-SYDEITAMT 702
Query: 539 GDGTNDASALHEADIGLAMG 558
GDG NDA AL +A+IG+AMG
Sbjct: 703 GDGVNDAPALKKAEIGIAMG 722
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 198 bits (504), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 191/620 (30%), Positives = 280/620 (45%), Gaps = 92/620 (14%)
Query: 14 FRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPA--YGIFISGHSLLID 71
++ + E K++ + QR K D+V GDIV +++GD+VPA + I +L +D
Sbjct: 119 LKEYEPEMGKVYRADRKSVQRIK--ARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVD 176
Query: 72 ESSLSGQS-----------EPRYMYEENP-FLLAGTKVQGGSGKMLVTTVGMRTEWGKLM 119
+S L+G+S +PR + ++ L +GT + G +V T G+ TE GK+
Sbjct: 177 QSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIR 236
Query: 120 ETLNEGGEDETPLQVKLNGVATIIGKIXXXXXXXXXXXXIGRFLGEKVIHNEFTDWSSAD 179
+ + +D+TPLQ KL+ + K+ IG F +H W
Sbjct: 237 DQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHG--GSWIRG- 291
Query: 180 ALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCI 239
I YF + V + A+PEGLP +T LA +++ A+VR L + ET+G S I
Sbjct: 292 ---AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 348
Query: 240 CTDKTRMLTTNHMVVDKIWIANTISNVEGN----------------------NRKDILQS 277
C+DKT LTTN M V K++I I V+G+ N K I
Sbjct: 349 CSDKTGTLTTNQMSVCKMFI---IDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSG 405
Query: 278 EISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFK 337
+ V T+ A+ N S + G +G TE+A+ ++ R K
Sbjct: 406 QFDGLVELATICALC-NDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSK 464
Query: 338 IVKVEPFNSV----------------RKKMSVLIALPAGGMRA------FCKGASEIVLS 375
+ + NSV RK MSV + PA RA F KGA E V+
Sbjct: 465 VERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCS-PAKSSRAAVGNKMFVKGAPEGVID 523
Query: 376 MCDKVVSDNGEPVPLSEEQFRNITDVIN--GFASEALRTLCLAFKDLNDSSNENNIPDSG 433
C+ V VP++ I VI G + LR L LA +D E + DS
Sbjct: 524 RCNYVRVGTTR-VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSS 582
Query: 434 --------YTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485
T + VVG+ DP R V ++Q C +AGI V M+TGDN TA AI + GI
Sbjct: 583 RFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 642
Query: 486 TSDGE----AVEGPEFRNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVT 538
+ E A G EF ++ A + + AR PS K +V L+ ++ E+ A+T
Sbjct: 643 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQ-SYDEITAMT 701
Query: 539 GDGTNDASALHEADIGLAMG 558
GDG NDA AL +A+IG+AMG
Sbjct: 702 GDGVNDAPALKKAEIGIAMG 721
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 190/620 (30%), Positives = 279/620 (45%), Gaps = 92/620 (14%)
Query: 14 FRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPA--YGIFISGHSLLID 71
++ + E K++ + QR K D+V GDIV +++GD+VPA + I +L +D
Sbjct: 119 LKEYEPEMGKVYRADRKSVQRIK--ARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVD 176
Query: 72 ESSLSGQS-----------EPRYMYEENP-FLLAGTKVQGGSGKMLVTTVGMRTEWGKLM 119
+S L+G+S +PR + ++ L +GT + G +V T G+ TE GK+
Sbjct: 177 QSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIR 236
Query: 120 ETLNEGGEDETPLQVKLNGVATIIGKIXXXXXXXXXXXXIGRFLGEKVIHNEFTDWSSAD 179
+ + +D+TPLQ KL+ + K+ IG F +H W
Sbjct: 237 DQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHG--GSWIRG- 291
Query: 180 ALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCI 239
I YF + V + A+PEGLP +T LA +++ A+VR L + ET+G S I
Sbjct: 292 ---AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 348
Query: 240 CTDKTRMLTTNHMVVDKIWIANTISNVEGN----------------------NRKDILQS 277
C+ KT LTTN M V K++I I V+G+ N K I
Sbjct: 349 CSXKTGTLTTNQMSVCKMFI---IDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSG 405
Query: 278 EISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFK 337
+ V T+ A+ N S + G +G TE+A+ ++ R K
Sbjct: 406 QFDGLVELATICALC-NDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSK 464
Query: 338 IVKVEPFNSV----------------RKKMSVLIALPAGGMRA------FCKGASEIVLS 375
+ + NSV RK MSV + PA RA F KGA E V+
Sbjct: 465 VERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCS-PAKSSRAAVGNKMFVKGAPEGVID 523
Query: 376 MCDKVVSDNGEPVPLSEEQFRNITDVIN--GFASEALRTLCLAFKDLNDSSNENNIPDSG 433
C+ V VP++ I VI G + LR L LA +D E + DS
Sbjct: 524 RCNYVRVGTTR-VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSS 582
Query: 434 --------YTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485
T + VVG+ DP R V ++Q C +AGI V M+TGDN TA AI + GI
Sbjct: 583 RFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 642
Query: 486 TSDGE----AVEGPEFRNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVT 538
+ E A G EF ++ A + + AR PS K +V L+ ++ E+ A+T
Sbjct: 643 GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQ-SYDEITAMT 701
Query: 539 GDGTNDASALHEADIGLAMG 558
GDG NDA AL +A+IG+AMG
Sbjct: 702 GDGVNDAPALKKAEIGIAMG 721
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 185/615 (30%), Positives = 283/615 (46%), Gaps = 83/615 (13%)
Query: 14 FRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPA--YGIFISGHSLLID 71
++ + E K++ + QR K D+V GDIV +++GD+VPA + I +L +D
Sbjct: 119 LKEYEPEMGKVYRADRKSVQRIK--ARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVD 176
Query: 72 ESSLSGQS-----------EPRYMYEENP-FLLAGTKVQGGSGKMLVTTVGMRTEWGKLM 119
+S L+G+S +PR + ++ L +GT + G +V T G+ TE GK+
Sbjct: 177 QSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIR 236
Query: 120 ETLNEGGEDETPLQVKLNGVATIIGKIXXXXXXXXXXXXIGRFLGEKVIHNEFTDWSSAD 179
+ + +D+TPLQ KL+ + K+ IG F +H W
Sbjct: 237 DQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHG--GSWIRG- 291
Query: 180 ALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCI 239
I YF + V + A+PEGLP +T LA +++ A+VR L + ET+G S I
Sbjct: 292 ---AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 348
Query: 240 CTDKTRMLTTNHMVVDKIWIANTIS---------NVEGNNRK---DILQSEISER----- 282
C+DKT LTTN M V K++I + I +V G+ ++L+++ R
Sbjct: 349 CSDKTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYD 408
Query: 283 -VLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFKIVKV 341
++++ N S + G +G TE+A+ ++ R K+ +
Sbjct: 409 GLVELATICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERA 468
Query: 342 EPFNSV----------------RKKMSVLIALPAG-----GMRAFCKGASEIVLSMCDKV 380
NSV RK MSV + PA G + F KGA E V+ C+ V
Sbjct: 469 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCS-PAKSRAAVGNKMFVKGAPEGVIDRCNYV 527
Query: 381 VSDNGEPVPLSEEQFRNITDVIN--GFASEALRTLCLAFKDLNDSSNENNIPDS------ 432
VP++ I VI G + LR L LA +D E + DS
Sbjct: 528 RVGTTR-VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEY 586
Query: 433 --GYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGE 490
T + VVG+ DP R V ++Q C +AGI V M+TGDN TA AI + GI + +
Sbjct: 587 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENED 646
Query: 491 ----AVEGPEFRNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTN 543
A G EF ++ A + + AR P+ K +V L+ +F E+ A+TGDG N
Sbjct: 647 VADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQ-SFDEITAMTGDGVN 705
Query: 544 DASALHEADIGLAMG 558
DA AL +A+IG+AMG
Sbjct: 706 DAPALKKAEIGIAMG 720
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 187/629 (29%), Positives = 283/629 (44%), Gaps = 102/629 (16%)
Query: 4 AISDYKQSLQFRDLDREKKKIFIQ--VTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGI 61
S Y+++ R +D K + Q V RDG++ + +V GD+V + GD++PA
Sbjct: 150 CFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLR 209
Query: 62 FISGHSLLIDESSLSGQSEPRY----MYEENPF-----LLAGTKVQGGSGKMLVTTVGMR 112
IS H +D SSL+G+SEP+ ENP T G+ + +V G R
Sbjct: 210 IISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDR 269
Query: 113 TEWGKLMETLNEGGE-DETPL-------QVKLNGVATIIGKIXXXXXXXXXXXXIGRFLG 164
T G++ TL G E TP+ + GVA +G + F+
Sbjct: 270 TVMGRI-ATLASGLEVGRTPIAIEIEHFIHIITGVAVFLG--------------VSFFIL 314
Query: 165 EKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALV 224
++ + ++ ++ II VPEGL VT+ L K++ LV
Sbjct: 315 SLIL-----------GYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLV 363
Query: 225 RHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGN--------NRKDILQ 276
++L A ET+GS S IC+DKT LT N M V +W N I + ++
Sbjct: 364 KNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATW 423
Query: 277 SEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQR-RE 335
S +S R+ + +A+FQ V K S+ G +ESA+L+ G + R R
Sbjct: 424 SALS-RIAALCNRAVFQAGQDNV---PILKRSVAGDASESALLKCIELCCGSVQGMRDRN 479
Query: 336 FKIVKVEPFNSVRK-KMSVLIALPAGGMRAFC--KGASEIVLSMCDKVVSDNGEPVPLSE 392
KIV++ PFNS K ++S+ + R KGA E +L C ++ NG PL E
Sbjct: 480 PKIVEI-PFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILL-NGAEEPLKE 537
Query: 393 ---EQFRNITDVINGFASEALRTLCLAFKD--LNDS----SNENNIPDSGYTLIAVVGIK 443
E F+N + G L A + N+ ++E N P + + ++ +
Sbjct: 538 DMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMI 597
Query: 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVE---------- 493
DP R V +AV C AGI V MVTGD+ TA+AIAK GI++ E +E
Sbjct: 598 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPI 657
Query: 494 --------------GPEFRNMSPADIIPKLQ-----VMARSLPSDKHTLVTQLRNTFGEV 534
G + +++S + L V AR+ P K +V + G +
Sbjct: 658 GQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQ-GAI 716
Query: 535 VAVTGDGTNDASALHEADIGLAMGIAGTE 563
VAVTGDG ND+ AL +ADIG+AMGI+G++
Sbjct: 717 VAVTGDGVNDSPALKKADIGVAMGISGSD 745
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 186/625 (29%), Positives = 282/625 (45%), Gaps = 87/625 (13%)
Query: 1 MVTAISDYKQSLQFRDLDREKKKIFIQ---VTRDGQRQKVCTYDLVVGDIVHLSIGDQVP 57
++T Y Q + + K + Q V R+G++ + ++VVGD+V + GD++P
Sbjct: 116 IITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIP 175
Query: 58 AYGIFISGHSLLIDESSLSGQSEPRY----MYEENPF-----LLAGTKVQGGSGKMLVTT 108
A IS + +D SSL+G+SEP+ ENP T G+ + +V
Sbjct: 176 ADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVY 235
Query: 109 VGMRTEWGKLMETLNEGGED-ETPLQVKLNGVATIIGKIXXXXXXXXXXXXIGRFLGEKV 167
G RT G++ TL G E +TP+ ++ II + FLG
Sbjct: 236 TGDRTVMGRI-ATLASGLEGGQTPIAAEIEHFIHII-------------TGVAVFLGVS- 280
Query: 168 IHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHL 227
F S T ++ ++ II VPEGL VT+ L K++ LV++L
Sbjct: 281 ----FFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNL 336
Query: 228 SACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGN-NRKDILQSEIS------ 280
A ET+GS S IC+DKT LT N M V +W N I + N+ + + S
Sbjct: 337 EAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLAL 396
Query: 281 ERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILE-FGLRLGGDFEAQRREFKIV 339
R+ + +A+FQ + K ++ G +ESA+L+ L G E + R KIV
Sbjct: 397 SRIAGLCNRAVFQANQENL---PILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIV 453
Query: 340 KVEPFNSVRK-KMSVLIALPAGGMRAFC--KGASEIVLSMCDKVVSDNGEPVPLSEE--- 393
++ PFNS K ++S+ R KGA E +L C ++ +G+ PL EE
Sbjct: 454 EI-PFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILI-HGKEQPLDEELKD 511
Query: 394 QFRNITDVINGFASEALRTLCLAFKD------LNDSSNENNIPDSGYTLIAVVGIKDPVR 447
F+N + G L L D +++ N P + ++ + DP R
Sbjct: 512 AFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPR 571
Query: 448 PGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVE-------------- 493
V +AV C AGI V MVTGD+ TA+AIAK GI++ E VE
Sbjct: 572 AAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVN 631
Query: 494 ----------GPEFRNMSPADIIPKLQ-----VMARSLPSDKHTLVTQLRNTFGEVVAVT 538
G + ++M+ + L+ V AR+ P K +V + G +VAVT
Sbjct: 632 PRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVT 690
Query: 539 GDGTNDASALHEADIGLAMGIAGTE 563
GDG ND+ A +ADIG+AMGIAG++
Sbjct: 691 GDGVNDSPASKKADIGVAMGIAGSD 715
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 185/625 (29%), Positives = 281/625 (44%), Gaps = 87/625 (13%)
Query: 1 MVTAISDYKQSLQFRDLDREKKKIFIQ---VTRDGQRQKVCTYDLVVGDIVHLSIGDQVP 57
++T Y Q + + K + Q V R+G++ + ++VVGD+V + GD++P
Sbjct: 110 IITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIP 169
Query: 58 AYGIFISGHSLLIDESSLSGQSEPRY----MYEENPF-----LLAGTKVQGGSGKMLVTT 108
A IS + +D SSL+G+SEP+ ENP T G+ + +V
Sbjct: 170 ADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVY 229
Query: 109 VGMRTEWGKLMETLNEGGED-ETPLQVKLNGVATIIGKIXXXXXXXXXXXXIGRFLGEKV 167
G RT G++ TL G E +TP+ ++ II + FLG
Sbjct: 230 TGDRTVMGRI-ATLASGLEGGQTPIAAEIEHFIHII-------------TGVAVFLGVS- 274
Query: 168 IHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHL 227
F S T ++ ++ II VPEGL VT+ L K++ LV++L
Sbjct: 275 ----FFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNL 330
Query: 228 SACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGN-NRKDILQSEIS------ 280
A ET+GS S IC+ KT LT N M V +W N I + N+ + + S
Sbjct: 331 EAVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLAL 390
Query: 281 ERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILE-FGLRLGGDFEAQRREFKIV 339
R+ + +A+FQ + K ++ G +ESA+L+ L G E + R KIV
Sbjct: 391 SRIAGLCNRAVFQANQENL---PILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIV 447
Query: 340 KVEPFNSVRK-KMSVLIALPAGGMRAFC--KGASEIVLSMCDKVVSDNGEPVPLSEE--- 393
++ PFNS K ++S+ R KGA E +L C ++ +G+ PL EE
Sbjct: 448 EI-PFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILI-HGKEQPLDEELKD 505
Query: 394 QFRNITDVINGFASEALRTLCLAFKD------LNDSSNENNIPDSGYTLIAVVGIKDPVR 447
F+N + G L L D +++ N P + ++ + DP R
Sbjct: 506 AFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPR 565
Query: 448 PGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVE-------------- 493
V +AV C AGI V MVTGD+ TA+AIAK GI++ E VE
Sbjct: 566 AAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVN 625
Query: 494 ----------GPEFRNMSPADIIPKLQ-----VMARSLPSDKHTLVTQLRNTFGEVVAVT 538
G + ++M+ + L+ V AR+ P K +V + G +VAVT
Sbjct: 626 PRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVT 684
Query: 539 GDGTNDASALHEADIGLAMGIAGTE 563
GDG ND+ A +ADIG+AMGIAG++
Sbjct: 685 GDGVNDSPASKKADIGVAMGIAGSD 709
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 131 bits (330), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 133/547 (24%), Positives = 240/547 (43%), Gaps = 84/547 (15%)
Query: 27 QVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMYE 86
+V RDG+ + LV GDIV + +GD +PA + G L +D+S+L+G+S P +
Sbjct: 133 KVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHP 192
Query: 87 ENPFLLAGTKVQGGSGKMLVTTVGMRTEWGK---LMETLNEGGEDETPLQVKLNGVATII 143
+ +G+ + G + +V G+ T +GK L+++ N+ G V T I
Sbjct: 193 GQE-VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGH--------FQKVLTAI 243
Query: 144 GKIXXXXXXXXXXXXIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLP 203
G IG + E ++ D ID V++ +P +P
Sbjct: 244 GNFCICSIA------IGMVI-EIIVMYPIQRRKYRDG---IDNLLVLLI---GGIPIAMP 290
Query: 204 LAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIANTI 263
+++++A +L GA+ + ++A E M +C+DKT LT N + VDK +
Sbjct: 291 TVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFC 350
Query: 264 SNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNS----ILGTPTESAIL 319
VE ++VL +F S+V +++D ++ +L P E+
Sbjct: 351 KGVE------------KDQVL------LFAAMASRV-ENQDAIDAAMVGMLADPKEA--- 388
Query: 320 EFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDK 379
R + V PFN V K+ ++ +G KGA E +L +
Sbjct: 389 -------------RAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELAKA 435
Query: 380 VVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAV 439
S + + + +I+ +A LR+L +A + + + + E+ P + + + +
Sbjct: 436 -----------SNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKES--PGAPWEFVGL 482
Query: 440 VGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTS--DGEAVEGPE- 496
+ + DP R E ++ L G+ V+M+TGD + + + G+ T+ A+ G
Sbjct: 483 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHK 542
Query: 497 ---FRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADI 553
++ ++I K A P K+ +V +L+ +V +TGDG NDA AL +ADI
Sbjct: 543 DANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQER-KHIVGMTGDGVNDAPALKKADI 601
Query: 554 GLAMGIA 560
G+A+ A
Sbjct: 602 GIAVADA 608
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 139/570 (24%), Positives = 253/570 (44%), Gaps = 83/570 (14%)
Query: 1 MVTAISDYKQSLQFRDL-DREKKKIFIQ--VTRDGQRQKVCTYDLVVGDIVHLSIGDQVP 57
++ A+ + Q Q + D KK + ++ V RDG +++ ++V GDI+ + G +P
Sbjct: 152 LLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIP 211
Query: 58 AYGIFISGHSLL-IDESSLSGQSEPRYMYEENPFLLAGTKVQGGSGKMLVTTVGMRTEWG 116
A G ++ + L +D+S+L+G+S ++ + + A + V+ G +++T G T G
Sbjct: 212 ADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQ-VFASSAVKRGEAFVVITATGDNTFVG 270
Query: 117 KLMETLNEGGEDETPLQVKLNGVATIIGKIXXXXXXXXXXXXIGRFLGEKVIHNEFTDWS 176
+ +N LNG+ TI+ + VI W
Sbjct: 271 RAAALVNAASGGSGHFTEVLNGIGTILLIL--------------------VIFTLLIVWV 310
Query: 177 SA----DALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACET 232
S+ + + I F + +TII VP GLP VT ++A L A+V+ LSA E+
Sbjct: 311 SSFYRSNPIVQILEFTLAITII--GVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIES 368
Query: 233 MGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIF 292
+ +C+DKT LT N + + + V G + +D++ L L A
Sbjct: 369 LAGVEILCSDKTGTLTKNKLSLHDPY------TVAGVDPEDLM--------LTACLAASR 414
Query: 293 QNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMS 352
+ G + DK S+ P ++L ++K+++ PF+ V KK+
Sbjct: 415 KKKGIDAI-DKAFLKSLKYYPRAKSVLS--------------KYKVLQFHPFDPVSKKVV 459
Query: 353 VLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRT 412
++ P G KGA VL + E P+ EE + + + FA+ R+
Sbjct: 460 AVVESPQGERITCVKGAPLFVLKTVE-------EDHPIPEEVDQAYKNKVAEFATRGFRS 512
Query: 413 LCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNI 472
L +A K S + ++ ++ DP R + V G++++M+TGD +
Sbjct: 513 LGVARKRGEGS----------WEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAV 562
Query: 473 NTARAIAKECGILTS--DGEAVEGPEFRNMSPADIIPKLQV---MARSLPSDKHTLVTQL 527
AR +++ G+ T+ + E + +M +++ ++ A P K+ +V L
Sbjct: 563 GIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEIL 622
Query: 528 RNTFGEVVAVTGDGTNDASALHEADIGLAM 557
+ G +VA+TGDG NDA +L +AD G+A+
Sbjct: 623 QQR-GYLVAMTGDGVNDAPSLKKADTGIAV 651
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 25/122 (20%)
Query: 437 IAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPE 496
+A++ ++DP++ E + ++GI + M+TGD+ TA A+A GI
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIK----------- 594
Query: 497 FRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556
+V+A +P DK +V++L++ G +VA+ GDG NDA AL +ADIG+A
Sbjct: 595 -------------KVVAEIMPEDKSRIVSELKDK-GLIVAMAGDGVNDAPALAKADIGIA 640
Query: 557 MG 558
MG
Sbjct: 641 MG 642
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 101/234 (43%), Gaps = 24/234 (10%)
Query: 27 QVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMYE 86
++ DG ++V ++ VGD++ + G+++P G G S +DES ++G+ P E
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRS-FVDESMVTGEPIP-VAKE 286
Query: 87 ENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKI 146
+ ++ T Q GS M VG T ++++ +++ P+Q + V+
Sbjct: 287 ASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVS------ 340
Query: 147 XXXXXXXXXXXXIGRFLGEKVIHN--EFTDWSSADALTLIDY-FAVVVTIIDVAVPEGLP 203
G F+ ++ F W+ + Y V+++ +A P L
Sbjct: 341 -------------GWFVPAVILVAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCALG 387
Query: 204 LAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKI 257
LA +S+ + K G L+++ A E M + + DKT LT H + +I
Sbjct: 388 LATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRI 441
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 26/120 (21%)
Query: 439 VVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFR 498
++ + D ++ K AVQ GI V M+TGDN +A AI++E +
Sbjct: 451 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 496
Query: 499 NMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558
D+ V+A LP K V +L+ EVVA GDG NDA AL +AD+G+A+G
Sbjct: 497 -----DL-----VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGIAVG 544
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 106/256 (41%), Gaps = 27/256 (10%)
Query: 28 VTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMYEE 87
V RDG+ V ++ VGDIV + G+++P G+ + G S +DES +SG+ P + +
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVP-VLKSK 194
Query: 88 NPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNG-VATIIGKI 146
+ T G K+ T VG T ++++ + + + P+Q + VA I +
Sbjct: 195 GDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTV 254
Query: 147 XXXXXXXXXXXXIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAV 206
V + F W L+ F ++ ++ VA P LA
Sbjct: 255 LL------------------VAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLAT 296
Query: 207 TLSLAFAMKKLMNDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNV 266
+L M K G L+++ A E + + DKT LT V + N
Sbjct: 297 PTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLN----- 351
Query: 267 EGNNRKDILQSEISER 282
G+ R+ + + I+ER
Sbjct: 352 -GDERELLRLAAIAER 366
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 26/120 (21%)
Query: 439 VVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFR 498
++ + D ++ K AVQ GI V M+TGDN +A AI++E +
Sbjct: 529 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 574
Query: 499 NMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558
D+ V+A LP K V +L+ EVVA GDG NDA AL +AD+G+A+G
Sbjct: 575 -----DL-----VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGIAVG 622
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 106/256 (41%), Gaps = 27/256 (10%)
Query: 28 VTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMYEE 87
V RDG+ V ++ VGDIV + G+++P G+ + G S +DES +SG+ P + +
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVP-VLKSK 272
Query: 88 NPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNG-VATIIGKI 146
+ T G K+ T VG T ++++ + + + P+Q + VA I +
Sbjct: 273 GDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTV 332
Query: 147 XXXXXXXXXXXXIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAV 206
V + F W L+ F ++ ++ VA P LA
Sbjct: 333 LL------------------VAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLAT 374
Query: 207 TLSLAFAMKKLMNDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNV 266
+L M K G L+++ A E + + DKT LT V + N
Sbjct: 375 PTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLN----- 429
Query: 267 EGNNRKDILQSEISER 282
G+ R+ + + I+ER
Sbjct: 430 -GDERELLRLAAIAER 444
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 26/120 (21%)
Query: 439 VVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFR 498
++ + D ++ K AVQ GI V M+TGDN +A AI++E +
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 202
Query: 499 NMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558
D+ V+A LP K V +L+ EVVA GDG NDA AL +AD+G+A+G
Sbjct: 203 -----DL-----VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGIAVG 250
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 26/120 (21%)
Query: 439 VVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFR 498
++ + D ++ K AVQ GI V M+TGDN +A AI++E +
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 202
Query: 499 NMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558
D+ V+A LP K V +L+ EVVA GDG NDA AL +AD+G+A+G
Sbjct: 203 -----DL-----VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGIAVG 250
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 27/125 (21%)
Query: 439 VVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFR 498
V+ + D +RP +EA+ GI M+TGDN A+ +A+E G+
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------- 184
Query: 499 NMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558
A LP +K V +++ + V A+ GDG NDA AL +AD+G+A+G
Sbjct: 185 -----------DYFAEVLPHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAIG 231
Query: 559 IAGTE 563
AGT+
Sbjct: 232 -AGTD 235
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 27/125 (21%)
Query: 439 VVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFR 498
V+ + D +RP +EA+ GI M+TGDN A+ +A+E G+
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------- 184
Query: 499 NMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558
A LP +K V +++ + V A+ GDG NDA AL +AD+G+A+G
Sbjct: 185 -----------DYFAEVLPHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAIG 231
Query: 559 IAGTE 563
AGT+
Sbjct: 232 -AGTD 235
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 26/120 (21%)
Query: 439 VVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFR 498
++ + D ++ K AVQ GI V +TGDN +A AI++E +
Sbjct: 137 IIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL-------------- 182
Query: 499 NMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558
D+ V+A LP K V +L+ EVVA GDG NDA AL +AD+G+A+G
Sbjct: 183 -----DL-----VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGIAVG 230
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 26/113 (23%)
Query: 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADI 505
++ K AVQ GI V +TGDN +A AI++E + D+
Sbjct: 23 LKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL-------------------DL 63
Query: 506 IPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558
V+A LP K V +L+ EVVA GDG NDA AL +AD+G+A+G
Sbjct: 64 -----VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGIAVG 109
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 11/110 (10%)
Query: 315 ESAILEFGLRLGGDFEAQR----REFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGAS 370
++A+LE G D E+ R R KI ++ PF+ R++MSV++A + CKGA
Sbjct: 37 DTAVLE-----GTDEESARSLASRWQKIDEI-PFDFERRRMSVVVAENTEHHQLVCKGAL 90
Query: 371 EIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDL 420
+ +L++C + V NGE VPL + R I V + + LR + +A K L
Sbjct: 91 QEILNVCSQ-VRHNGEIVPLDDIMLRKIKRVTDTLNRQGLRVVAVATKYL 139
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
Length = 113
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 28 VTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEP 81
V RDG+ V ++ VGDIV + G+++P G+ + G S +DES +SG+ P
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVP 68
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 45 GDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMYEENPFLLAGTKVQGGSGKM 104
GDI+ + G + P G I GHS ++DES ++G++ P + ++AG+ Q GS +
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHS-MVDESLITGEAMP-VAKKPGSTVIAGSINQNGSLLI 102
Query: 105 LVTTVGMRTEWGKLMETLNE 124
T VG T ++++ + E
Sbjct: 103 CATHVGADTTLSQIVKLVEE 122
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 25/122 (20%)
Query: 437 IAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPE 496
IA I D RP +K+ ++ G+ + +++GD + + ++KE I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEY--------- 178
Query: 497 FRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556
+ N+SP DK ++ +L+ G V + GDG NDA+AL AD+ +A
Sbjct: 179 YSNLSP---------------EDKVRIIEKLKQN-GNKVLMIGDGVNDAAALALADVSVA 222
Query: 557 MG 558
MG
Sbjct: 223 MG 224
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 25/122 (20%)
Query: 437 IAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPE 496
IA I D RP +K+ ++ G+ + +++GD + + ++KE I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEY--------- 178
Query: 497 FRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556
+ N+SP DK ++ +L+ G V + GDG NDA+AL AD+ +A
Sbjct: 179 YSNLSP---------------EDKVRIIEKLKQN-GNKVLMIGDGVNDAAALALADVSVA 222
Query: 557 MG 558
MG
Sbjct: 223 MG 224
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 25/122 (20%)
Query: 437 IAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPE 496
IA I D RP +K+ ++ G+ + +++GD + + ++KE I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEY--------- 178
Query: 497 FRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556
+ N+SP DK ++ +L+ G V + GDG NDA+AL AD+ +A
Sbjct: 179 YSNLSP---------------EDKVRIIEKLKQN-GNKVLMIGDGVNDAAALALADVSVA 222
Query: 557 MG 558
MG
Sbjct: 223 MG 224
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADI 505
V P +E V+T E G V +++G + ++ E +F+ +
Sbjct: 80 VSPEARELVETLREKGFKVVLISGSFEEVLEPFKELGDEFMANRAIFEDGKFQGI----- 134
Query: 506 IPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558
R DK + + R+ F + GDG DA AD+G+A+G
Sbjct: 135 --------RLRFRDKGEFLKRFRDGF---ILAMGDGYADAKMFERADMGIAVG 176
>pdb|4AP9|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
Length = 201
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAV-EGPEFRNMSPAD 504
V P +E V+T E G V +++G + KE G A+ E +F+ +
Sbjct: 80 VSPEARELVETLREKGFKVVLISG-SFEEVLEPFKELGDEFXANRAIFEDGKFQGI---- 134
Query: 505 IIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558
R DK + + R+ F + GDG DA AD G+A+G
Sbjct: 135 ---------RLRFRDKGEFLKRFRDGF---ILAXGDGYADAKXFERADXGIAVG 176
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 184 IDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHL 227
I YF + V + A+PEGLP +T LA +++ A+VR L
Sbjct: 5 IYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 263 ISNVEGNNRKDILQSEISERVLDITLQAIFQNT 295
I NVEG++ +LQ+EIS+R L I + A+ +T
Sbjct: 180 IPNVEGHDVVPLLQNEISKRELPIEIVALINDT 212
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 539 GDGTNDASALHEADIGLAMGIA 560
GDG ND S L A IG+AMG A
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQA 231
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 539 GDGTNDASALHEADIGLAMGIA 560
GDG ND S L A IG+AMG A
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQA 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,793,779
Number of Sequences: 62578
Number of extensions: 635915
Number of successful extensions: 1713
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1622
Number of HSP's gapped (non-prelim): 44
length of query: 563
length of database: 14,973,337
effective HSP length: 104
effective length of query: 459
effective length of database: 8,465,225
effective search space: 3885538275
effective search space used: 3885538275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)