Query 044020
Match_columns 563
No_of_seqs 220 out of 1722
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 10:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0204 Calcium transporting A 100.0 2E-101 3E-106 790.2 48.1 557 1-563 197-769 (1034)
2 COG0474 MgtA Cation transport 100.0 7.5E-94 1.6E-98 798.7 53.7 527 4-563 121-669 (917)
3 KOG0202 Ca2+ transporting ATPa 100.0 4.9E-94 1.1E-98 736.1 43.7 549 4-563 96-708 (972)
4 TIGR01517 ATPase-IIB_Ca plasma 100.0 1.3E-92 2.8E-97 796.7 56.2 551 2-563 144-699 (941)
5 TIGR01523 ATPase-IID_K-Na pota 100.0 3.2E-90 7E-95 776.5 52.7 539 2-563 97-776 (1053)
6 TIGR01106 ATPase-IIC_X-K sodiu 100.0 6.5E-90 1.4E-94 776.7 53.6 542 2-563 116-714 (997)
7 TIGR01116 ATPase-IIA1_Ca sarco 100.0 3.2E-88 6.9E-93 758.2 56.0 549 3-563 53-660 (917)
8 PRK10517 magnesium-transportin 100.0 4.7E-88 1E-92 749.8 49.4 505 5-563 141-667 (902)
9 TIGR01522 ATPase-IIA2_Ca golgi 100.0 3.9E-87 8.4E-92 748.0 54.0 525 2-562 96-647 (884)
10 TIGR01524 ATPase-IIIB_Mg magne 100.0 4.8E-87 1E-91 742.6 51.4 505 4-563 106-632 (867)
11 PRK15122 magnesium-transportin 100.0 3.5E-87 7.6E-92 744.2 49.2 505 4-563 129-667 (903)
12 TIGR01647 ATPase-IIIA_H plasma 100.0 1.2E-85 2.6E-90 722.6 49.0 482 4-563 73-564 (755)
13 TIGR01657 P-ATPase-V P-type AT 100.0 2.7E-84 5.9E-89 735.7 43.8 510 6-558 210-827 (1054)
14 PRK01122 potassium-transportin 100.0 1.5E-78 3.3E-83 645.0 45.4 451 3-563 83-537 (679)
15 TIGR01652 ATPase-Plipid phosph 100.0 9.3E-79 2E-83 692.7 41.3 538 2-557 63-793 (1057)
16 PRK14010 potassium-transportin 100.0 7.9E-78 1.7E-82 638.9 44.3 443 7-563 87-533 (673)
17 KOG0203 Na+/K+ ATPase, alpha s 100.0 4.4E-79 9.5E-84 624.6 30.9 541 3-563 139-736 (1019)
18 PLN03190 aminophospholipid tra 100.0 6.2E-76 1.3E-80 662.4 47.9 548 1-563 148-900 (1178)
19 TIGR01497 kdpB K+-transporting 100.0 3.9E-75 8.5E-80 617.3 46.1 453 2-563 83-538 (675)
20 COG2217 ZntA Cation transport 100.0 1.6E-74 3.5E-79 613.6 37.5 438 4-563 185-629 (713)
21 KOG0208 Cation transport ATPas 100.0 1.9E-73 4.1E-78 591.8 32.4 515 7-558 232-878 (1140)
22 PRK11033 zntA zinc/cadmium/mer 100.0 1.8E-69 3.9E-74 592.6 42.1 416 21-563 240-658 (741)
23 KOG0207 Cation transport ATPas 100.0 6.3E-71 1.4E-75 573.4 28.7 459 2-563 350-815 (951)
24 TIGR01494 ATPase_P-type ATPase 100.0 1.2E-68 2.6E-73 568.2 43.4 418 3-558 13-432 (499)
25 KOG0205 Plasma membrane H+-tra 100.0 7.3E-68 1.6E-72 526.9 32.2 489 4-563 115-614 (942)
26 TIGR01525 ATPase-IB_hvy heavy 100.0 3.9E-67 8.6E-72 561.5 38.5 423 21-562 52-476 (556)
27 TIGR01511 ATPase-IB1_Cu copper 100.0 2.7E-66 5.9E-71 553.0 38.2 406 22-562 89-495 (562)
28 PRK10671 copA copper exporting 100.0 4E-65 8.6E-70 569.7 45.0 440 4-563 297-742 (834)
29 TIGR01512 ATPase-IB2_Cd heavy 100.0 1.6E-65 3.5E-70 545.4 35.3 401 22-561 53-454 (536)
30 KOG0209 P-type ATPase [Inorgan 100.0 3.8E-66 8.3E-71 526.2 17.7 506 7-561 235-834 (1160)
31 KOG0206 P-type ATPase [General 100.0 1.3E-62 2.8E-67 535.9 33.4 544 2-562 93-822 (1151)
32 KOG0210 P-type ATPase [Inorgan 100.0 1.8E-63 3.8E-68 498.1 19.4 521 2-562 141-809 (1051)
33 COG2216 KdpB High-affinity K+ 100.0 2.4E-57 5.3E-62 442.2 29.5 453 3-562 83-538 (681)
34 PF00122 E1-E2_ATPase: E1-E2 A 100.0 1.8E-35 4E-40 283.2 17.6 213 3-232 9-230 (230)
35 PF00702 Hydrolase: haloacid d 99.9 5.5E-23 1.2E-27 194.9 9.4 97 433-552 115-215 (215)
36 COG4087 Soluble P-type ATPase 99.5 6.4E-14 1.4E-18 113.6 9.4 100 434-557 19-118 (152)
37 PF13246 Hydrolase_like2: Puta 99.5 6.7E-14 1.4E-18 111.8 9.1 85 294-379 3-90 (91)
38 PRK10513 sugar phosphate phosp 99.2 5.4E-11 1.2E-15 116.8 9.5 42 444-485 19-60 (270)
39 COG0561 Cof Predicted hydrolas 99.2 7.9E-11 1.7E-15 115.2 10.1 49 438-486 12-61 (264)
40 PRK15126 thiamin pyrimidine py 99.2 5.3E-11 1.2E-15 116.9 8.5 43 444-486 18-60 (272)
41 PRK10976 putative hydrolase; P 99.2 6.7E-11 1.5E-15 115.8 9.1 43 444-486 18-60 (266)
42 PRK01158 phosphoglycolate phos 99.1 2.4E-10 5.3E-15 109.3 9.4 125 438-563 12-203 (230)
43 TIGR01487 SPP-like sucrose-pho 99.1 3.1E-10 6.7E-15 107.3 9.2 118 445-563 18-193 (215)
44 KOG4383 Uncharacterized conser 99.1 2.4E-08 5.2E-13 102.4 22.7 188 368-558 698-1019(1354)
45 PRK03669 mannosyl-3-phosphogly 99.1 1.4E-09 3.1E-14 106.6 12.0 41 445-485 24-64 (271)
46 PLN02887 hydrolase family prot 99.0 4.5E-10 9.8E-15 119.3 9.0 42 444-485 324-365 (580)
47 COG0560 SerB Phosphoserine pho 99.0 1.4E-09 3.1E-14 101.5 11.0 101 444-558 76-186 (212)
48 TIGR01482 SPP-subfamily Sucros 99.0 6.8E-10 1.5E-14 105.9 8.7 117 445-563 15-195 (225)
49 PF08282 Hydrolase_3: haloacid 99.0 6.2E-10 1.3E-14 107.9 8.6 43 443-485 13-55 (254)
50 TIGR02137 HSK-PSP phosphoserin 99.0 1.5E-09 3.2E-14 100.9 9.4 100 445-558 68-170 (203)
51 PRK10530 pyridoxal phosphate ( 99.0 2.2E-09 4.7E-14 105.6 9.6 42 445-486 20-61 (272)
52 PRK11133 serB phosphoserine ph 98.9 4.2E-09 9.1E-14 104.6 9.7 102 445-557 181-289 (322)
53 TIGR01670 YrbI-phosphatas 3-de 98.9 6.3E-09 1.4E-13 92.5 9.0 95 435-562 24-121 (154)
54 TIGR02726 phenyl_P_delta pheny 98.9 2.9E-09 6.3E-14 95.4 6.6 84 452-562 41-127 (169)
55 TIGR01486 HAD-SF-IIB-MPGP mann 98.9 1.6E-08 3.5E-13 98.3 12.1 49 438-486 8-57 (256)
56 COG1778 Low specificity phosph 98.9 4.1E-09 9E-14 89.1 6.5 84 452-562 42-128 (170)
57 PRK00192 mannosyl-3-phosphogly 98.8 2.4E-08 5.2E-13 98.0 11.3 44 443-486 19-62 (273)
58 TIGR00099 Cof-subfamily Cof su 98.8 1.3E-08 2.9E-13 99.0 9.1 43 444-486 15-57 (256)
59 PRK09484 3-deoxy-D-manno-octul 98.7 2.3E-08 5.1E-13 91.6 7.8 83 452-561 55-140 (183)
60 TIGR02461 osmo_MPG_phos mannos 98.7 4E-08 8.7E-13 93.1 7.8 44 443-486 13-56 (225)
61 TIGR02463 MPGP_rel mannosyl-3- 98.7 1.8E-07 3.9E-12 88.9 11.9 40 446-485 17-56 (221)
62 KOG1615 Phosphoserine phosphat 98.7 4.5E-08 9.8E-13 85.8 6.5 101 445-558 88-199 (227)
63 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.6 1.9E-07 4.1E-12 87.2 10.7 107 445-558 80-189 (201)
64 TIGR00338 serB phosphoserine p 98.6 2.1E-07 4.6E-12 88.2 9.7 104 445-558 85-194 (219)
65 TIGR01485 SPP_plant-cyano sucr 98.6 1.6E-07 3.5E-12 90.8 8.5 119 443-562 19-213 (249)
66 PRK13582 thrH phosphoserine ph 98.5 4.1E-07 8.8E-12 85.3 9.3 99 445-558 68-170 (205)
67 PLN02382 probable sucrose-phos 98.5 4E-07 8.8E-12 93.9 9.5 117 445-562 28-224 (413)
68 PRK10187 trehalose-6-phosphate 98.5 5.1E-07 1.1E-11 87.9 9.6 117 445-562 36-223 (266)
69 TIGR03333 salvage_mtnX 2-hydro 98.5 8E-07 1.7E-11 83.9 10.4 108 444-557 69-181 (214)
70 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.5 6.8E-07 1.5E-11 83.6 9.6 108 443-558 85-197 (202)
71 PRK12702 mannosyl-3-phosphogly 98.5 1.5E-06 3.2E-11 83.3 11.2 44 443-486 16-59 (302)
72 PRK14502 bifunctional mannosyl 98.4 9E-07 2E-11 94.1 10.3 40 446-485 434-473 (694)
73 TIGR02471 sucr_syn_bact_C sucr 98.4 6E-07 1.3E-11 86.1 7.4 43 519-562 159-204 (236)
74 TIGR01488 HAD-SF-IB Haloacid D 98.4 1.1E-06 2.4E-11 80.2 8.4 101 446-551 74-177 (177)
75 PF12710 HAD: haloacid dehalog 98.4 8.6E-07 1.9E-11 82.1 7.1 92 448-549 92-192 (192)
76 TIGR01489 DKMTPPase-SF 2,3-dik 98.3 2E-06 4.4E-11 79.2 9.3 113 444-556 71-186 (188)
77 cd01427 HAD_like Haloacid deha 98.3 2.1E-06 4.5E-11 74.3 8.2 114 442-556 21-138 (139)
78 PRK09552 mtnX 2-hydroxy-3-keto 98.3 2.8E-06 6E-11 80.5 8.8 105 445-556 74-184 (219)
79 COG0546 Gph Predicted phosphat 98.3 2.6E-06 5.5E-11 80.7 8.4 102 443-558 87-191 (220)
80 PLN02954 phosphoserine phospha 98.3 5.5E-06 1.2E-10 78.8 10.6 101 445-558 84-197 (224)
81 PTZ00174 phosphomannomutase; P 98.2 8.8E-06 1.9E-10 78.5 9.5 44 438-481 14-58 (247)
82 TIGR01484 HAD-SF-IIB HAD-super 98.2 8.7E-06 1.9E-10 76.2 9.1 113 445-557 17-204 (204)
83 PRK13222 phosphoglycolate phos 98.1 1.1E-05 2.3E-10 76.9 9.0 101 444-558 92-193 (226)
84 TIGR01449 PGP_bact 2-phosphogl 98.0 1.2E-05 2.6E-10 75.8 7.5 97 445-555 85-181 (213)
85 TIGR01454 AHBA_synth_RP 3-amin 98.0 1.3E-05 2.7E-10 75.2 7.5 97 445-555 75-171 (205)
86 PRK10826 2-deoxyglucose-6-phos 98.0 1.4E-05 3E-10 76.0 7.3 99 444-556 91-189 (222)
87 PRK13223 phosphoglycolate phos 97.9 2.4E-05 5.2E-10 76.6 7.8 101 444-558 100-201 (272)
88 PRK08238 hypothetical protein; 97.9 4.7E-05 1E-09 79.9 9.8 93 445-558 72-165 (479)
89 PRK13288 pyrophosphatase PpaX; 97.9 2.4E-05 5.2E-10 73.8 6.6 95 446-554 83-177 (214)
90 PRK13226 phosphoglycolate phos 97.9 4.1E-05 8.8E-10 73.0 8.1 97 445-555 95-191 (229)
91 PF05116 S6PP: Sucrose-6F-phos 97.8 4.3E-05 9.3E-10 73.6 7.4 44 518-562 164-210 (247)
92 TIGR01548 HAD-SF-IA-hyp1 haloa 97.8 5.2E-05 1.1E-09 70.5 7.7 94 443-551 104-197 (197)
93 PRK11590 hypothetical protein; 97.8 0.00018 3.8E-09 67.7 11.1 106 445-558 95-202 (211)
94 TIGR01545 YfhB_g-proteo haloac 97.8 0.00017 3.6E-09 67.6 10.6 107 445-558 94-201 (210)
95 smart00775 LNS2 LNS2 domain. T 97.8 0.00013 2.8E-09 64.8 9.3 105 443-554 25-141 (157)
96 PLN02770 haloacid dehalogenase 97.8 6.9E-05 1.5E-09 72.4 7.5 96 445-554 108-203 (248)
97 TIGR03351 PhnX-like phosphonat 97.7 8.3E-05 1.8E-09 70.5 7.6 99 444-555 86-186 (220)
98 TIGR01422 phosphonatase phosph 97.7 0.0001 2.2E-09 71.5 8.3 96 445-553 99-195 (253)
99 TIGR01428 HAD_type_II 2-haloal 97.7 0.00013 2.8E-09 67.9 7.9 96 445-554 92-187 (198)
100 TIGR01990 bPGM beta-phosphoglu 97.7 8.2E-05 1.8E-09 68.3 6.3 94 445-554 87-180 (185)
101 PLN03243 haloacid dehalogenase 97.7 0.00011 2.4E-09 71.2 7.4 96 445-554 109-204 (260)
102 TIGR01544 HAD-SF-IE haloacid d 97.7 0.00029 6.3E-09 67.9 9.9 103 444-549 120-228 (277)
103 TIGR01662 HAD-SF-IIIA HAD-supe 97.6 0.00035 7.5E-09 60.3 9.3 93 444-554 24-126 (132)
104 TIGR02253 CTE7 HAD superfamily 97.6 0.00015 3.2E-09 68.8 7.1 100 445-558 94-195 (221)
105 PRK14501 putative bifunctional 97.6 0.00029 6.3E-09 78.9 10.2 117 445-562 514-703 (726)
106 PRK13225 phosphoglycolate phos 97.5 0.0003 6.6E-09 68.7 8.6 90 445-554 142-234 (273)
107 PRK13478 phosphonoacetaldehyde 97.5 0.00034 7.3E-09 68.4 8.8 96 445-553 101-197 (267)
108 TIGR01672 AphA HAD superfamily 97.5 0.00025 5.5E-09 67.2 7.0 87 446-553 115-205 (237)
109 PRK11009 aphA acid phosphatase 97.5 0.00037 8.1E-09 66.0 7.7 90 445-557 114-210 (237)
110 TIGR01509 HAD-SF-IA-v3 haloaci 97.5 0.00037 8.1E-09 63.7 7.6 95 445-554 85-179 (183)
111 PLN02575 haloacid dehalogenase 97.5 0.00036 7.8E-09 70.6 7.9 96 445-554 216-311 (381)
112 PRK14988 GMP/IMP nucleotidase; 97.5 0.00027 5.9E-09 67.1 6.7 96 445-554 93-188 (224)
113 PHA02530 pseT polynucleotide k 97.4 0.00033 7.1E-09 69.8 7.4 109 441-555 183-292 (300)
114 PRK11587 putative phosphatase; 97.4 0.00059 1.3E-08 64.5 8.7 99 445-558 83-182 (218)
115 TIGR02009 PGMB-YQAB-SF beta-ph 97.4 0.00029 6.3E-09 64.6 6.2 94 445-554 88-181 (185)
116 PF13419 HAD_2: Haloacid dehal 97.4 0.00017 3.7E-09 65.2 4.2 98 444-555 76-173 (176)
117 PLN02940 riboflavin kinase 97.3 0.00052 1.1E-08 70.5 7.2 96 445-554 93-189 (382)
118 COG4359 Uncharacterized conser 97.3 0.00075 1.6E-08 59.2 6.4 106 445-556 73-183 (220)
119 TIGR02252 DREG-2 REG-2-like, H 97.2 0.00072 1.6E-08 63.1 6.7 95 445-554 105-200 (203)
120 TIGR01685 MDP-1 magnesium-depe 97.2 0.0019 4.1E-08 58.2 9.0 103 435-556 35-154 (174)
121 TIGR01549 HAD-SF-IA-v1 haloaci 97.2 0.00091 2E-08 59.3 6.4 90 446-552 65-154 (154)
122 PLN02779 haloacid dehalogenase 97.1 0.0014 3.1E-08 64.6 7.8 98 445-556 144-243 (286)
123 PRK06698 bifunctional 5'-methy 97.1 0.0014 3.1E-08 69.3 8.3 92 445-553 330-421 (459)
124 PRK06769 hypothetical protein; 97.1 0.0015 3.3E-08 59.1 7.1 95 446-554 29-132 (173)
125 TIGR01261 hisB_Nterm histidino 97.1 0.0011 2.4E-08 59.1 5.9 93 445-555 29-143 (161)
126 TIGR01675 plant-AP plant acid 97.0 0.0026 5.6E-08 59.6 8.1 81 444-546 119-210 (229)
127 PLN02580 trehalose-phosphatase 97.0 0.0028 6.2E-08 64.1 8.8 49 513-562 292-354 (384)
128 TIGR01668 YqeG_hyp_ppase HAD s 97.0 0.0019 4.2E-08 58.3 6.8 84 445-553 43-130 (170)
129 TIGR02254 YjjG/YfnB HAD superf 97.0 0.0018 3.9E-08 61.4 6.9 94 445-553 97-192 (224)
130 PRK09449 dUMP phosphatase; Pro 97.0 0.0023 5E-08 60.7 7.5 96 445-554 95-191 (224)
131 COG3769 Predicted hydrolase (H 97.0 0.0055 1.2E-07 55.5 9.1 38 449-486 27-64 (274)
132 TIGR01656 Histidinol-ppas hist 96.9 0.0026 5.6E-08 56.0 6.7 90 445-555 27-141 (147)
133 TIGR01691 enolase-ppase 2,3-di 96.9 0.0047 1E-07 58.1 8.4 98 442-555 92-192 (220)
134 PLN02423 phosphomannomutase 96.8 0.004 8.7E-08 59.9 8.0 38 519-558 189-231 (245)
135 PRK08942 D,D-heptose 1,7-bisph 96.8 0.0046 1E-07 56.5 8.1 99 445-554 29-142 (181)
136 PLN02811 hydrolase 96.8 0.0035 7.5E-08 59.3 7.3 96 445-554 78-179 (220)
137 TIGR01533 lipo_e_P4 5'-nucleot 96.7 0.0097 2.1E-07 57.4 9.7 87 443-549 116-205 (266)
138 TIGR01664 DNA-3'-Pase DNA 3'-p 96.7 0.004 8.7E-08 55.9 6.7 94 446-555 43-158 (166)
139 TIGR01681 HAD-SF-IIIC HAD-supe 96.7 0.0038 8.3E-08 53.4 6.3 88 445-550 29-126 (128)
140 PF06888 Put_Phosphatase: Puta 96.7 0.0079 1.7E-07 56.8 8.4 104 445-548 71-185 (234)
141 smart00577 CPDc catalytic doma 96.7 0.0021 4.5E-08 56.6 4.3 97 443-557 43-140 (148)
142 COG2179 Predicted hydrolase of 96.6 0.0062 1.4E-07 53.0 6.5 85 444-553 45-132 (175)
143 PLN02205 alpha,alpha-trehalose 96.5 0.0082 1.8E-07 67.7 8.9 39 444-482 615-654 (854)
144 TIGR00213 GmhB_yaeD D,D-heptos 96.5 0.012 2.5E-07 53.6 8.2 105 446-555 27-146 (176)
145 TIGR02247 HAD-1A3-hyp Epoxide 96.5 0.003 6.6E-08 59.3 4.3 97 444-554 93-191 (211)
146 PRK10725 fructose-1-P/6-phosph 96.4 0.0075 1.6E-07 55.4 6.6 92 447-554 90-181 (188)
147 TIGR01457 HAD-SF-IIA-hyp2 HAD- 96.3 0.029 6.2E-07 54.1 10.1 50 438-487 10-62 (249)
148 COG0637 Predicted phosphatase/ 96.3 0.01 2.2E-07 56.2 6.7 98 444-555 85-182 (221)
149 PRK09456 ?-D-glucose-1-phospha 96.3 0.0085 1.8E-07 55.7 6.0 97 445-555 84-181 (199)
150 PRK10563 6-phosphogluconate ph 96.2 0.0082 1.8E-07 56.8 5.8 95 445-556 88-183 (221)
151 TIGR01993 Pyr-5-nucltdase pyri 96.2 0.013 2.7E-07 53.7 6.7 98 445-555 84-181 (184)
152 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.1 0.02 4.4E-07 55.0 8.1 93 438-552 17-115 (242)
153 KOG3120 Predicted haloacid deh 96.0 0.014 3E-07 53.1 5.9 139 396-558 57-209 (256)
154 PLN02919 haloacid dehalogenase 96.0 0.019 4E-07 66.8 8.1 94 446-553 162-256 (1057)
155 PF13344 Hydrolase_6: Haloacid 96.0 0.015 3.2E-07 47.4 5.3 90 438-553 7-100 (101)
156 TIGR01686 FkbH FkbH-like domai 95.9 0.022 4.7E-07 57.2 7.5 89 445-555 31-126 (320)
157 PRK10444 UMP phosphatase; Prov 95.9 0.026 5.6E-07 54.3 7.6 48 438-485 10-60 (248)
158 PLN03017 trehalose-phosphatase 95.9 0.044 9.6E-07 55.1 9.4 48 432-480 118-167 (366)
159 PRK05446 imidazole glycerol-ph 95.8 0.02 4.3E-07 57.7 6.7 98 444-555 29-144 (354)
160 PF08235 LNS2: LNS2 (Lipin/Ned 95.7 0.087 1.9E-06 46.2 9.1 102 444-554 26-141 (157)
161 COG4030 Uncharacterized protei 95.5 0.03 6.5E-07 51.0 5.7 117 445-562 83-238 (315)
162 PF03767 Acid_phosphat_B: HAD 95.4 0.03 6.5E-07 53.1 5.9 89 445-547 115-207 (229)
163 PLN02645 phosphoglycolate phos 95.3 0.05 1.1E-06 54.4 7.2 49 438-486 37-88 (311)
164 PHA02597 30.2 hypothetical pro 95.0 0.08 1.7E-06 49.0 7.5 93 445-554 74-169 (197)
165 PF09419 PGP_phosphatase: Mito 94.8 0.12 2.6E-06 46.0 7.5 92 442-556 56-162 (168)
166 TIGR01680 Veg_Stor_Prot vegeta 94.6 0.16 3.5E-06 48.6 8.4 82 443-546 143-236 (275)
167 TIGR00685 T6PP trehalose-phosp 94.3 0.069 1.5E-06 51.3 5.4 45 514-558 162-217 (244)
168 TIGR01684 viral_ppase viral ph 94.0 0.15 3.2E-06 49.5 6.6 54 446-499 146-200 (301)
169 COG1011 Predicted hydrolase (H 93.9 0.18 4E-06 47.7 7.3 95 444-553 98-193 (229)
170 PRK10748 flavin mononucleotide 93.7 0.1 2.2E-06 50.0 5.1 92 445-556 113-205 (238)
171 KOG3040 Predicted sugar phosph 93.2 0.25 5.5E-06 44.7 6.2 52 435-486 13-67 (262)
172 PLN02151 trehalose-phosphatase 92.9 0.48 1.1E-05 47.6 8.6 35 446-481 121-155 (354)
173 PLN02177 glycerol-3-phosphate 92.9 0.42 9E-06 50.7 8.5 97 446-558 111-214 (497)
174 COG3700 AphA Acid phosphatase 92.8 0.24 5.1E-06 43.6 5.4 88 446-555 115-208 (237)
175 TIGR01458 HAD-SF-IIA-hyp3 HAD- 92.8 0.15 3.4E-06 49.3 4.9 49 438-486 10-65 (257)
176 TIGR01493 HAD-SF-IA-v2 Haloaci 92.5 0.1 2.2E-06 47.2 3.0 85 445-550 90-174 (175)
177 TIGR01452 PGP_euk phosphoglyco 92.4 0.79 1.7E-05 45.0 9.4 49 438-486 11-62 (279)
178 PHA03398 viral phosphatase sup 91.8 0.4 8.6E-06 46.6 6.1 50 447-496 150-199 (303)
179 PF02358 Trehalose_PPase: Treh 91.6 0.47 1E-05 45.3 6.6 41 518-558 164-216 (235)
180 TIGR01689 EcbF-BcbF capsule bi 90.5 0.4 8.7E-06 40.6 4.3 32 444-475 23-54 (126)
181 TIGR01663 PNK-3'Pase polynucle 90.0 1.1 2.5E-05 47.7 8.2 40 446-485 198-249 (526)
182 TIGR02244 HAD-IG-Ncltidse HAD 90.0 1.5 3.3E-05 44.0 8.6 104 446-553 185-317 (343)
183 PF12689 Acid_PPase: Acid Phos 89.6 1.3 2.9E-05 39.6 7.1 93 446-550 46-142 (169)
184 TIGR02251 HIF-SF_euk Dullard-l 89.4 0.27 5.9E-06 43.8 2.6 94 441-555 38-135 (162)
185 COG0647 NagD Predicted sugar p 88.4 2 4.4E-05 41.5 7.9 45 437-481 16-60 (269)
186 COG0241 HisB Histidinol phosph 87.4 2.7 5.9E-05 37.9 7.6 87 446-554 32-144 (181)
187 COG1877 OtsB Trehalose-6-phosp 86.3 3.6 7.9E-05 39.7 8.3 112 441-552 36-218 (266)
188 TIGR01458 HAD-SF-IIA-hyp3 HAD- 85.9 0.37 8.1E-06 46.6 1.4 101 447-558 122-224 (257)
189 COG2503 Predicted secreted aci 82.4 9 0.00019 36.0 8.6 42 445-486 122-167 (274)
190 KOG3085 Predicted hydrolase (H 80.6 2.9 6.4E-05 39.5 5.0 101 443-558 111-213 (237)
191 TIGR01459 HAD-SF-IIA-hyp4 HAD- 77.6 0.81 1.7E-05 43.9 0.3 96 447-554 140-236 (242)
192 PF05822 UMPH-1: Pyrimidine 5' 77.4 2.1 4.6E-05 40.5 3.0 102 445-551 90-198 (246)
193 KOG2914 Predicted haloacid-hal 77.3 5.6 0.00012 37.3 5.7 96 446-555 93-192 (222)
194 TIGR01460 HAD-SF-IIA Haloacid 77.3 5.1 0.00011 38.2 5.7 49 438-486 7-59 (236)
195 PF13242 Hydrolase_like: HAD-h 74.9 3.8 8.2E-05 31.0 3.4 41 517-558 7-49 (75)
196 TIGR01456 CECR5 HAD-superfamil 74.8 16 0.00035 36.6 8.8 48 438-485 9-64 (321)
197 TIGR01452 PGP_euk phosphoglyco 72.2 13 0.00028 36.4 7.3 101 447-558 145-247 (279)
198 PF11019 DUF2608: Protein of u 69.4 38 0.00083 32.6 9.6 102 446-550 82-196 (252)
199 TIGR01647 ATPase-IIIA_H plasma 62.2 61 0.0013 36.8 10.9 33 183-215 237-269 (755)
200 PLN03063 alpha,alpha-trehalose 60.1 71 0.0015 36.5 10.9 38 446-483 533-571 (797)
201 PLN03064 alpha,alpha-trehalose 59.4 50 0.0011 38.1 9.5 39 446-484 623-662 (934)
202 PTZ00445 p36-lilke protein; Pr 58.3 6.8 0.00015 36.2 2.0 135 395-553 28-199 (219)
203 KOG2882 p-Nitrophenyl phosphat 57.7 51 0.0011 32.2 7.9 48 438-485 31-81 (306)
204 TIGR02468 sucrsPsyn_pln sucros 56.7 63 0.0014 37.7 9.7 36 450-485 789-828 (1050)
205 TIGR02250 FCP1_euk FCP1-like p 54.0 22 0.00048 31.4 4.5 44 442-486 55-98 (156)
206 PF01455 HupF_HypC: HupF/HypC 53.1 37 0.0008 25.2 4.9 33 23-55 16-51 (68)
207 CHL00200 trpA tryptophan synth 51.6 1.3E+02 0.0027 29.2 9.7 41 517-558 187-231 (263)
208 TIGR01494 ATPase_P-type ATPase 51.3 1.6E+02 0.0034 31.6 11.4 148 30-215 53-213 (499)
209 PF00122 E1-E2_ATPase: E1-E2 A 50.4 28 0.00061 32.7 5.1 58 3-66 6-63 (230)
210 cd05017 SIS_PGI_PMI_1 The memb 49.6 32 0.0007 28.5 4.7 37 446-484 55-91 (119)
211 PRK13125 trpA tryptophan synth 49.4 1E+02 0.0022 29.4 8.7 93 448-558 116-214 (244)
212 PF14336 DUF4392: Domain of un 48.9 47 0.001 32.7 6.4 39 447-485 62-101 (291)
213 PF13380 CoA_binding_2: CoA bi 46.8 24 0.00052 29.3 3.5 40 446-485 64-104 (116)
214 PF06941 NT5C: 5' nucleotidase 46.4 16 0.00034 33.4 2.5 29 445-473 73-101 (191)
215 TIGR00262 trpA tryptophan synt 44.7 1.5E+02 0.0032 28.6 9.0 98 442-558 121-227 (256)
216 TIGR01116 ATPase-IIA1_Ca sarco 44.5 2.4E+02 0.0051 33.0 12.2 20 45-64 81-100 (917)
217 TIGR01106 ATPase-IIC_X-K sodiu 43.8 2.9E+02 0.0062 32.7 12.8 190 2-214 120-326 (997)
218 cd00860 ThrRS_anticodon ThrRS 43.7 56 0.0012 25.2 5.1 47 439-485 6-53 (91)
219 PRK04302 triosephosphate isome 43.3 1.8E+02 0.0038 27.3 9.2 100 446-558 99-202 (223)
220 KOG3109 Haloacid dehalogenase- 42.1 84 0.0018 29.3 6.3 106 438-553 92-199 (244)
221 PLN02591 tryptophan synthase 41.6 2.2E+02 0.0049 27.3 9.6 94 446-558 116-218 (250)
222 PF00389 2-Hacid_dh: D-isomer 41.3 1.3E+02 0.0028 25.3 7.4 84 442-557 3-88 (133)
223 PF12710 HAD: haloacid dehalog 41.2 12 0.00026 33.9 0.9 13 239-251 1-13 (192)
224 PRK11507 ribosome-associated p 39.8 37 0.00081 25.3 3.1 28 26-53 37-64 (70)
225 TIGR02988 YaaA_near_RecF S4 do 39.5 52 0.0011 23.4 3.8 29 20-50 30-58 (59)
226 cd02071 MM_CoA_mut_B12_BD meth 39.5 66 0.0014 26.9 5.1 55 432-486 49-105 (122)
227 TIGR03127 RuMP_HxlB 6-phospho 39.0 2.7E+02 0.0058 24.8 9.5 104 449-558 19-124 (179)
228 COG1188 Ribosome-associated he 39.0 35 0.00076 27.4 3.0 29 27-56 35-63 (100)
229 cd02067 B12-binding B12 bindin 38.0 14 0.0003 30.7 0.7 56 431-486 48-105 (119)
230 cd01994 Alpha_ANH_like_IV This 37.8 2.2E+02 0.0048 26.0 8.7 37 450-486 12-61 (194)
231 PF05240 APOBEC_C: APOBEC-like 37.5 36 0.00078 24.0 2.5 23 448-470 2-24 (55)
232 cd05008 SIS_GlmS_GlmD_1 SIS (S 37.2 29 0.00062 29.0 2.5 34 446-479 58-91 (126)
233 cd05013 SIS_RpiR RpiR-like pro 37.2 2.4E+02 0.0052 23.3 8.5 107 450-558 3-112 (139)
234 PF15584 Imm44: Immunity prote 36.8 14 0.00031 28.8 0.5 20 44-63 13-32 (94)
235 PRK08883 ribulose-phosphate 3- 36.3 2.4E+02 0.0052 26.4 8.8 47 439-485 84-132 (220)
236 smart00306 HintN Hint (Hedgeho 35.5 36 0.00078 26.8 2.8 26 26-51 74-99 (100)
237 PF13275 S4_2: S4 domain; PDB: 35.4 24 0.00051 25.9 1.4 27 27-54 34-60 (65)
238 PRK01045 ispH 4-hydroxy-3-meth 35.4 89 0.0019 30.8 5.9 141 396-562 100-267 (298)
239 TIGR00216 ispH_lytB (E)-4-hydr 35.2 1.6E+02 0.0034 28.9 7.4 140 396-562 100-265 (280)
240 cd05014 SIS_Kpsf KpsF-like pro 34.7 27 0.00057 29.3 1.9 34 446-479 59-92 (128)
241 TIGR03679 arCOG00187 arCOG0018 34.2 3E+02 0.0066 25.7 9.2 72 450-546 10-100 (218)
242 COG0279 GmhA Phosphoheptose is 34.2 28 0.00061 30.7 2.0 43 435-479 112-154 (176)
243 KOG3128 Uncharacterized conser 34.0 67 0.0015 30.5 4.5 43 446-488 139-181 (298)
244 COG4229 Predicted enolase-phos 33.9 82 0.0018 28.4 4.7 93 442-553 100-198 (229)
245 TIGR01657 P-ATPase-V P-type AT 33.6 7.2E+02 0.016 29.6 14.0 32 183-214 399-430 (1054)
246 cd05710 SIS_1 A subgroup of th 33.6 34 0.00074 28.5 2.4 32 446-477 59-90 (120)
247 PF03120 DNA_ligase_OB: NAD-de 33.5 23 0.00049 27.4 1.1 19 40-58 48-67 (82)
248 PF12017 Tnp_P_element: Transp 33.2 63 0.0014 30.7 4.3 37 450-486 198-234 (236)
249 PRK04980 hypothetical protein; 33.0 1.2E+02 0.0025 24.6 5.1 46 21-71 16-63 (102)
250 PF08645 PNK3P: Polynucleotide 32.5 41 0.00089 29.7 2.8 24 446-469 30-53 (159)
251 TIGR01163 rpe ribulose-phospha 31.8 4E+02 0.0087 24.3 9.8 38 443-480 86-125 (210)
252 PRK13111 trpA tryptophan synth 31.8 3.1E+02 0.0067 26.5 8.9 41 517-558 185-228 (258)
253 PF00875 DNA_photolyase: DNA p 31.7 2.1E+02 0.0045 25.2 7.3 37 450-486 55-91 (165)
254 cd00429 RPE Ribulose-5-phospha 31.2 3.5E+02 0.0077 24.6 9.2 36 446-481 90-127 (211)
255 PRK13670 hypothetical protein; 31.0 3.2E+02 0.0069 28.2 9.3 98 434-550 1-112 (388)
256 PF03129 HGTP_anticodon: Antic 29.7 93 0.002 24.3 4.3 48 438-485 3-54 (94)
257 TIGR01522 ATPase-IIA2_Ca golgi 29.7 6.8E+02 0.015 29.2 12.8 36 31-67 137-172 (884)
258 TIGR01501 MthylAspMutase methy 29.5 2.9E+02 0.0063 23.7 7.3 55 432-486 51-113 (134)
259 COG4996 Predicted phosphatase 29.1 97 0.0021 26.3 4.1 43 445-487 41-83 (164)
260 COG1778 Low specificity phosph 28.6 32 0.0007 30.1 1.4 26 230-255 2-27 (170)
261 PRK02261 methylaspartate mutas 28.5 2.9E+02 0.0063 23.6 7.3 55 432-486 53-115 (137)
262 PLN02645 phosphoglycolate phos 28.5 49 0.0011 33.0 2.9 40 517-557 233-274 (311)
263 cd00859 HisRS_anticodon HisRS 28.1 1.2E+02 0.0026 22.9 4.6 47 439-485 6-53 (91)
264 PRK05581 ribulose-phosphate 3- 27.7 4.9E+02 0.011 24.0 9.7 38 445-482 93-132 (220)
265 PF02593 dTMP_synthase: Thymid 27.6 1.1E+02 0.0023 28.7 4.7 91 443-554 57-156 (217)
266 cd04724 Tryptophan_synthase_al 27.4 3.3E+02 0.0072 25.9 8.3 93 447-558 115-215 (242)
267 PRK06033 hypothetical protein; 27.2 29 0.00063 26.9 0.8 25 36-60 14-38 (83)
268 PF01380 SIS: SIS domain SIS d 27.0 63 0.0014 26.9 3.0 37 443-479 62-98 (131)
269 PRK08433 flagellar motor switc 26.9 29 0.00063 28.6 0.8 27 34-60 37-63 (111)
270 KOG3416 Predicted nucleic acid 26.0 42 0.00091 28.0 1.5 16 40-55 60-75 (134)
271 cd05013 SIS_RpiR RpiR-like pro 25.8 56 0.0012 27.4 2.5 30 448-477 74-103 (139)
272 cd01019 ZnuA Zinc binding prot 25.4 2E+02 0.0043 28.2 6.6 53 433-485 197-253 (286)
273 TIGR03128 RuMP_HxlA 3-hexulose 25.4 5.2E+02 0.011 23.5 9.2 37 449-485 90-128 (206)
274 TIGR03127 RuMP_HxlB 6-phospho 25.2 55 0.0012 29.4 2.4 35 446-480 84-118 (179)
275 TIGR00129 fdhD_narQ formate de 25.1 1.1E+02 0.0025 29.0 4.6 36 450-485 181-216 (237)
276 PRK06788 flagellar motor switc 24.6 25 0.00054 29.3 0.0 71 34-120 39-110 (119)
277 PRK10517 magnesium-transportin 24.4 8.3E+02 0.018 28.5 12.2 41 30-71 184-224 (902)
278 PRK14170 bifunctional 5,10-met 24.2 1.2E+02 0.0026 29.7 4.6 44 443-486 11-63 (284)
279 cd01137 PsaA Metal binding pro 24.0 2.1E+02 0.0046 28.0 6.5 54 432-485 194-251 (287)
280 COG0078 ArgF Ornithine carbamo 23.8 4.8E+02 0.01 25.8 8.4 86 449-556 88-179 (310)
281 cd05006 SIS_GmhA Phosphoheptos 23.7 56 0.0012 29.3 2.2 29 446-474 113-141 (177)
282 PRK00724 formate dehydrogenase 23.6 1.3E+02 0.0028 29.2 4.7 36 450-485 210-245 (263)
283 COG1225 Bcp Peroxiredoxin [Pos 23.5 1.8E+02 0.004 25.6 5.2 35 451-485 54-88 (157)
284 PF09926 DUF2158: Uncharacteri 23.4 52 0.0011 23.1 1.4 12 43-54 2-13 (53)
285 cd00958 DhnA Class I fructose- 23.2 3.8E+02 0.0082 25.2 7.9 19 448-466 109-127 (235)
286 PRK01045 ispH 4-hydroxy-3-meth 23.2 4.5E+02 0.0098 26.0 8.4 19 522-541 104-122 (298)
287 PF07591 PT-HINT: Pretoxin HIN 23.2 61 0.0013 27.6 2.1 28 35-62 70-97 (130)
288 TIGR00216 ispH_lytB (E)-4-hydr 23.1 4.9E+02 0.011 25.5 8.5 19 522-541 104-122 (280)
289 PF03031 NIF: NLI interacting 23.1 1.1E+02 0.0024 26.6 4.0 38 446-484 37-74 (159)
290 PF11142 DUF2917: Protein of u 23.1 1.1E+02 0.0023 22.3 3.1 15 42-56 40-54 (63)
291 PRK15175 Vi polysaccharide exp 22.9 1.3E+02 0.0027 30.7 4.6 19 24-42 198-216 (355)
292 PF01479 S4: S4 domain; Inter 22.9 91 0.002 20.8 2.6 29 18-48 20-48 (48)
293 TIGR00612 ispG_gcpE 1-hydroxy- 22.8 2.2E+02 0.0047 28.5 6.0 92 451-558 213-315 (346)
294 cd03018 PRX_AhpE_like Peroxire 22.5 1.8E+02 0.0038 24.8 5.1 34 451-484 52-85 (149)
295 PRK07028 bifunctional hexulose 22.5 7.2E+02 0.016 25.9 10.5 89 450-558 96-190 (430)
296 PRK14194 bifunctional 5,10-met 22.5 1.3E+02 0.0029 29.7 4.6 45 442-486 12-65 (301)
297 PRK13937 phosphoheptose isomer 22.3 67 0.0014 29.3 2.4 32 446-477 118-149 (188)
298 PRK15122 magnesium-transportin 22.2 1E+03 0.022 27.8 12.4 159 30-214 173-351 (903)
299 PRK15078 polysaccharide export 22.2 1.4E+02 0.003 30.8 4.8 29 24-52 211-251 (379)
300 PRK14169 bifunctional 5,10-met 22.2 1.4E+02 0.0029 29.3 4.5 43 444-486 11-62 (282)
301 PRK12360 4-hydroxy-3-methylbut 22.2 2E+02 0.0043 28.1 5.7 140 397-563 104-267 (281)
302 COG1171 IlvA Threonine dehydra 22.2 2.5E+02 0.0055 28.3 6.5 59 464-548 78-136 (347)
303 PRK11543 gutQ D-arabinose 5-ph 21.9 7.8E+02 0.017 24.3 11.0 111 446-558 27-141 (321)
304 KOG3139 N-acetyltransferase [G 21.7 1.6E+02 0.0034 26.0 4.3 51 436-486 86-143 (165)
305 TIGR00074 hypC_hupF hydrogenas 21.6 1.9E+02 0.0042 22.0 4.3 31 25-55 16-49 (76)
306 cd01017 AdcA Metal binding pro 21.3 2E+02 0.0044 28.0 5.7 54 432-485 188-245 (282)
307 PF11549 Sec31: Protein transp 21.2 30 0.00065 23.5 -0.1 10 539-548 23-32 (51)
308 PF06819 Arc_PepC: Archaeal Pe 21.2 49 0.0011 27.1 1.1 35 35-78 27-61 (110)
309 PRK14167 bifunctional 5,10-met 21.0 1.5E+02 0.0033 29.2 4.7 44 443-486 11-63 (297)
310 PF00072 Response_reg: Respons 21.0 3.3E+02 0.0071 21.4 6.2 39 448-486 56-96 (112)
311 PF00877 NLPC_P60: NlpC/P60 fa 21.0 1.4E+02 0.003 23.9 3.8 40 33-73 43-82 (105)
312 PF00578 AhpC-TSA: AhpC/TSA fa 20.9 1.7E+02 0.0037 23.9 4.5 37 449-485 47-83 (124)
313 TIGR01460 HAD-SF-IIA Haloacid 20.9 1.1E+02 0.0024 28.9 3.7 34 521-554 195-229 (236)
314 PF12791 RsgI_N: Anti-sigma fa 20.8 1.1E+02 0.0025 21.3 2.8 35 24-58 6-42 (56)
315 COG5012 Predicted cobalamin bi 20.8 21 0.00046 33.1 -1.2 82 403-485 126-208 (227)
316 KOG0541 Alkyl hydroperoxide re 20.7 1.7E+02 0.0037 25.7 4.2 40 447-486 64-104 (171)
317 cd03017 PRX_BCP Peroxiredoxin 20.7 2.1E+02 0.0045 24.0 5.1 34 451-484 47-80 (140)
318 TIGR00685 T6PP trehalose-phosp 20.6 93 0.002 29.6 3.1 33 446-478 26-59 (244)
319 cd04906 ACT_ThrD-I_1 First of 20.5 1.1E+02 0.0024 23.6 3.0 35 438-472 42-77 (85)
320 TIGR00640 acid_CoA_mut_C methy 20.5 4E+02 0.0086 22.6 6.6 55 432-486 52-108 (132)
321 PF02634 FdhD-NarQ: FdhD/NarQ 20.4 1.1E+02 0.0024 29.1 3.5 36 450-485 181-216 (236)
322 CHL00113 rps4 ribosomal protei 20.1 1.5E+02 0.0033 27.3 4.2 27 27-53 115-141 (201)
No 1
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-101 Score=790.18 Aligned_cols=557 Identities=59% Similarity=0.908 Sum_probs=516.4
Q ss_pred CchhhHHHHHHHHHHHHHHHhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCC
Q 044020 1 MVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSE 80 (563)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~ 80 (563)
+++++++|+|++|+++|+++..+.++.|+|||+.++|+..||+||||+.++.||.+||||++++|++|.||||++||||+
T Consensus 197 ~VtA~nDy~qe~QF~~L~~~k~~~k~~ViR~G~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd 276 (1034)
T KOG0204|consen 197 LVTAVNDYRQELQFRKLQKEKRNIKFQVIRGGRRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESD 276 (1034)
T ss_pred EEeecchhHHhhhhhhhhhhhhceEEEEEECCEEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCc
Confidence 47899999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC-CCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044020 81 PRYMYE-ENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLI 159 (563)
Q Consensus 81 p~~k~~-~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 159 (563)
++.|.. .++++++||++.+|+++++|+.+|.+|.+|+++..+.....+++|+|.++++++..+..+.++++.+++++++
T Consensus 277 ~v~k~~~~dPfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~tpLQ~kL~~lA~~Igk~Gl~~A~~~~~VL~ 356 (1034)
T KOG0204|consen 277 HVQKSLDKDPFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEETPLQVKLNGLATQIGKIGLLFAALTFIVLV 356 (1034)
T ss_pred ceeccCCCCCeEeecceeecCcceEEEEEeeecchHhhHHHhhhcCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 7899999999999999999999999999999999999988899999999999999999999999999999998
Q ss_pred HHHhhcccccccc--ccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCee
Q 044020 160 GRFLGEKVIHNEF--TDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSAS 237 (563)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~ 237 (563)
..|+......... ..|.......+..+|..++.++++|+|.+||+++++++++++++|.+.+.++|+.++||++|..+
T Consensus 357 ~r~~~~~~~~~~~~~~~~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVTLsLAys~kkMmkD~~LVRhL~ACETMGsAT 436 (1034)
T KOG0204|consen 357 IRFFIGKTKIEGGTGTTWSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVTLSLAYSMKKMMKDNNLVRHLDACETMGSAT 436 (1034)
T ss_pred HHHhheeeecCCCCCccccHHHHHHHHHHhhheeEEEEEECCCCccHHHHHHHHHHHHHHhcchhHHHHhHHHhhcCCce
Confidence 8887766554433 35555557788999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCC--CceecCCccH
Q 044020 238 CICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDG--KNSILGTPTE 315 (563)
Q Consensus 238 ~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e 315 (563)
+||.|||||||+|+|.|.+.|+.+..+..+... . ..+.+...+++..+...|+...++..+.+ ..+..|+|+|
T Consensus 437 ~ICsDKTGTLT~N~MtVV~~~~~~~~~k~~~~~-~----~~l~~~~~~ll~~gI~~Nt~g~v~~~~~~g~~~~~~GspTE 511 (1034)
T KOG0204|consen 437 AICSDKTGTLTTNRMTVVQSYIGSEHYKVNSPK-S----SNLPPSLLDLLLQGIAQNTTGSVVKPEKGGEQPEQLGSPTE 511 (1034)
T ss_pred EEEecCcCceEeeeEEEEeeeeccccccccCcc-c----ccCCHHHHHHHHHHHhhcCCCeEEecCCCCcCccccCCHHH
Confidence 999999999999999999999988876533222 1 34678889999999999998888887665 6799999999
Q ss_pred HHHHHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHH
Q 044020 316 SAILEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQF 395 (563)
Q Consensus 316 ~al~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~ 395 (563)
.||+.|+..+|.+++..|....+++.+||+|.||+|+++++.++++.++++||++|.++.+|+++++.+|+..+++++.+
T Consensus 512 ~AlL~f~~~LG~~~~~~R~e~~v~kv~~FNS~kK~~gvvi~~~~~~~y~~~KGAsEiVL~~C~~~~~~~g~~~~~~e~~~ 591 (1034)
T KOG0204|consen 512 CALLGFGLKLGMDFQDVRPEEKVVKVYPFNSVKKRMGVVIKLPDGGHYVHWKGASEIVLKSCEYYIDSNGELVPFNEDDR 591 (1034)
T ss_pred HHHHHHHHHhCcchHhhcchhheeEEeccCcccceeeEEEEcCCCCeEEEEcChHHHHHHhhhheECCCCCEeeCCHHHH
Confidence 99999999999999999999999999999999999999999887772399999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhhccCCC----CC--CCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcC
Q 044020 396 RNITDVINGFASEALRTLCLAFKDLNDS----SN--ENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTG 469 (563)
Q Consensus 396 ~~i~~~~~~~~~~G~r~i~~a~~~l~~~----~~--~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TG 469 (563)
..+++.++.++++|+|++|+|||++... +. .....+.+++++|+++++||.||+++++|+.|+++||+|-|+||
T Consensus 592 ~~~~~~Ie~mA~~~LRti~lAy~df~~~~~~~~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTG 671 (1034)
T KOG0204|consen 592 KSFKDVIEPMASEGLRTICLAYRDFVAGPDEEPSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTG 671 (1034)
T ss_pred HHHHHHHHHHHHhhhheeeEEeeccccCCCCCCCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeC
Confidence 9999999999999999999999995544 11 12467899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCC--ceeechhhhcCCCC---CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccC
Q 044020 470 DNINTARAIAKECGILTSDG--EAVEGPEFRNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTND 544 (563)
Q Consensus 470 d~~~~a~~~a~~lgi~~~~~--~~~~g~~~~~~~~~---~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND 544 (563)
|+..+|+++|.+|||..++. .++.|+++.+++++ ++++++.|++|.+|.+|.-+|+.+++. |++|++.|||.||
T Consensus 672 DNI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~DK~lLVk~L~~~-g~VVAVTGDGTND 750 (1034)
T KOG0204|consen 672 DNINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPNDKHLLVKGLIKQ-GEVVAVTGDGTND 750 (1034)
T ss_pred CcHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCchHHHHHHHHHhc-CcEEEEecCCCCC
Confidence 99999999999999998877 89999999998877 889999999999999999999999987 9999999999999
Q ss_pred HHHHhhCCceEeecCCCCC
Q 044020 545 ASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 545 ~~~l~~a~vgiamg~~~~~ 563 (563)
.|+|+.||||.|||+.|+|
T Consensus 751 aPALkeADVGlAMGIaGTe 769 (1034)
T KOG0204|consen 751 APALKEADVGLAMGIAGTE 769 (1034)
T ss_pred chhhhhcccchhccccchh
Confidence 9999999999999999985
No 2
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-94 Score=798.73 Aligned_cols=527 Identities=38% Similarity=0.576 Sum_probs=459.1
Q ss_pred hhHHHHHHHHHHHHHHHhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCccc
Q 044020 4 AISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRY 83 (563)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~ 83 (563)
...+|+.++...++.+.. +.+++|+|||++++|++++|||||||.+++||+||||++|+++++++||||+|||||.|+.
T Consensus 121 ~~qe~~a~~~l~~lk~~~-~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~l~VdEs~LTGES~pv~ 199 (917)
T COG0474 121 FVQEYRAEKALEALKKMS-SPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLEVDESALTGESLPVE 199 (917)
T ss_pred HHHHHHHHHHHHHHHhhc-cCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecCceEEcccccCCCcchh
Confidence 345555555555555543 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-------------CCCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 044020 84 MY-------------EENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFF 150 (563)
Q Consensus 84 k~-------------~~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (563)
|. +..+++|+||.+.+|.+.++|++||.+|..|++.+.+......++|+++.++++..++..+++++
T Consensus 200 K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l~~~l~~~~~~l~~~~l~~ 279 (917)
T COG0474 200 KQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPLQRKLNKLGKFLLVLALVL 279 (917)
T ss_pred ccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 96 45789999999999999999999999999999999999876789999999999999999988888
Q ss_pred HHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhh
Q 044020 151 SVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSAC 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~l 230 (563)
+++++++.++.. . ..+...|+.+++++++++|.+||+.++++++.+..+|+++++++|+++++
T Consensus 280 ~~~~~~~~~~~~--~---------------~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~mak~~~ivr~l~av 342 (917)
T COG0474 280 GALVFVVGLFRG--G---------------NGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRMAKDNAIVRSLNAI 342 (917)
T ss_pred HHHHHHHHHHhc--C---------------ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccchhhccchh
Confidence 887777652211 0 12577899999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceec
Q 044020 231 ETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSIL 310 (563)
Q Consensus 231 e~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (563)
|+||++|+||+|||||||+|+|+|.+++..+...... ........... .+..++.+||.+....+ + ++..
T Consensus 343 E~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~~~~~~------~~~~~~~~~~~-~~l~~~~lc~~~~~~~~-~--~~~~ 412 (917)
T COG0474 343 ETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDID------DKDLKDSPALL-RFLLAAALCNSVTPEKN-G--WYQA 412 (917)
T ss_pred hhccCccEEEecCCCCCccCeEEEEEEEeCCCccccc------ccccccchHHH-HHHHHHHhcCccccccc-C--ceec
Confidence 9999999999999999999999999999985110000 00111122222 34444555665555444 3 7788
Q ss_pred CCccHHHHHHHHHHcCC--ChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccc
Q 044020 311 GTPTESAILEFGLRLGG--DFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPV 388 (563)
Q Consensus 311 ~~~~e~al~~~~~~~~~--~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~ 388 (563)
|||+|.|+++++.+.+. +.......+++++.+||+|+||||+++++..++++++++||+||.|+++|+.. +...
T Consensus 413 gdptE~Al~~~a~~~~~~~~~~~~~~~~~~~~~~PFdS~rKrMsviv~~~~~~~~~~~KGApe~il~~~~~~----~~~~ 488 (917)
T COG0474 413 GDPTEGALVEFAEKLGFSLDLSGLEVEYPILAEIPFDSERKRMSVIVKTDEGKYILFVKGAPEVILERCKSI----GELE 488 (917)
T ss_pred CCccHHHHHHHHHhcCCcCCHHHHhhhcceeEEecCCCCceEEEEEEEcCCCcEEEEEcCChHHHHHHhccc----Cccc
Confidence 99999999999999998 88888888999999999999999999999777779999999999999999876 6778
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCCCCC--CCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEE
Q 044020 389 PLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSNEN--NIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRM 466 (563)
Q Consensus 389 ~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~--~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i 466 (563)
+++++.++.+.+..+.|+++|+|++++|||.++..+... ...|+|++|+|+++|+||+|++++++|+.|+++||+++|
T Consensus 489 ~~~~~~~~~~~~~~~~la~~glRvla~A~k~~~~~~~~~~~~~~E~dl~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~M 568 (917)
T COG0474 489 PLTEEGLRTLEEAVKELASEGLRVLAVAYKKLDRAEKDDEVDEIESDLVFLGLTGIEDPPREDVKEAIEELREAGIKVWM 568 (917)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhhhhccceeehhhhccCCCCccHHHHHHHHHHCCCcEEE
Confidence 899999999999999999999999999999776655432 468899999999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHcCCCCCC--CceeechhhhcCCCC---CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCC
Q 044020 467 VTGDNINTARAIAKECGILTSD--GEAVEGPEFRNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDG 541 (563)
Q Consensus 467 ~TGd~~~~a~~~a~~lgi~~~~--~~~~~g~~~~~~~~~---~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg 541 (563)
+|||+..+|.++|+++|+.... ..+++|.+++.+.++ +...+..+|||++|+||..+|+.||++ |+.|+|+|||
T Consensus 569 iTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~qK~~IV~~lq~~-g~vVamtGDG 647 (917)
T COG0474 569 ITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQKARIVEALQKS-GHVVAMTGDG 647 (917)
T ss_pred ECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 9999999999999999998776 459999999998886 566667799999999999999999999 9999999999
Q ss_pred ccCHHHHhhCCceEeecCCCCC
Q 044020 542 TNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 542 ~ND~~~l~~a~vgiamg~~~~~ 563 (563)
.||+||||+||||||||.+|+|
T Consensus 648 vNDapALk~ADVGIamg~~Gtd 669 (917)
T COG0474 648 VNDAPALKAADVGIAMGGEGTD 669 (917)
T ss_pred chhHHHHHhcCccEEecccHHH
Confidence 9999999999999999976764
No 3
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-94 Score=736.14 Aligned_cols=549 Identities=36% Similarity=0.562 Sum_probs=462.0
Q ss_pred hhHHHHHHHHHHHHHHHhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCccc
Q 044020 4 AISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRY 83 (563)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~ 83 (563)
.+.||+.++..++|.+ +.+..++|+|+|+.+.+++++|||||||.++.||+||||.++++..++.||||.|||||.|+.
T Consensus 96 ~~QEy~aEkalEaLk~-l~p~~~~V~R~gk~~~i~A~eLVPGDiV~l~vGDkVPADlRl~e~~sl~iDeS~LTGEs~pv~ 174 (972)
T KOG0202|consen 96 FVQEYNAEKALEALKE-LVPPMAHVLRSGKLQHILARELVPGDIVELKVGDKIPADLRLIEAKSLRIDESSLTGESEPVS 174 (972)
T ss_pred eeeehhhHHHHHHHHh-cCCccceEEecCcccceehhccCCCCEEEEecCCccccceeEEeeeeeeeecccccCCccccc
Confidence 4568888888888775 457789999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-------------CCCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 044020 84 MY-------------EENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFF 150 (563)
Q Consensus 84 k~-------------~~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (563)
|. +..|++|+||.|..|.++++|+.||.+|.+|++.+.++..+.+++|+|+.++.+.+.+..+..+.
T Consensus 175 K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e~~kTPLqk~ld~~G~qLs~~is~i 254 (972)
T KOG0202|consen 175 KDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATESPKTPLQKKLDEFGKQLSKVISFI 254 (972)
T ss_pred ccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHheeh
Confidence 84 34568999999999999999999999999999999999989999999999999999988665554
Q ss_pred HHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhh
Q 044020 151 SVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSAC 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~l 230 (563)
++.+.++-+..|. . ......| +.....+|..++++.++++|.+||..++++++.|.+||+|+++++|...++
T Consensus 255 ~v~v~~~nig~f~-~---p~~~g~~----fk~~~~~f~IaVsLAVAAIPEGLPaVvT~tLALG~~rMakknaIVRkLPsV 326 (972)
T KOG0202|consen 255 CVGVWLLNIGHFL-D---PVHGGSW----FKGALYYFKIAVSLAVAAIPEGLPAVVTTTLALGTRRMAKKNAIVRKLPSV 326 (972)
T ss_pred hhhHHHhhhhhhc-c---ccccccc----hhchhhhhhHHHHHHHHhccCCCcchhhhhHHHhHHHHHhhhhhhhcccch
Confidence 4444444222222 0 0111122 235678899999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeecccccccccCceEEEEEEEcCeeeeec---------CCCccccc--------cccccHHHHHHHHHHHHh
Q 044020 231 ETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVE---------GNNRKDIL--------QSEISERVLDITLQAIFQ 293 (563)
Q Consensus 231 e~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~---------~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 293 (563)
|+||-+++||.|||||||+|+|.+.++|+.+...... +....+.. .....+.+..++..+..|
T Consensus 327 ETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~~~~~~~~f~~tg~ty~~~g~v~~~~~~~~~~~~~~~~l~~l~~i~~lC 406 (972)
T KOG0202|consen 327 ETLGCVNVICSDKTGTLTTNQMTVSKIFIPDGGTATVDEFNPTGTTYSPEGEVFKDGLYEKDKAGDNDLLQELAEICALC 406 (972)
T ss_pred hhccceeEEecCCCCcccccceEEEEEEecccccccccccccCCceeCCCCceEecCccccccccccHHHHHHHHHHHhh
Confidence 9999999999999999999999999999987654322 00000000 011223344444455555
Q ss_pred ccCCceeecCCCCceecCCccHHHHHHHHHHcCCChHH---------------HhhhceEEEEecCCCCceeEEEEEEcC
Q 044020 294 NTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEA---------------QRREFKIVKVEPFNSVRKKMSVLIALP 358 (563)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~---------------~~~~~~~~~~~~f~~~~~~~sviv~~~ 358 (563)
|. +....+..+.++..|.|+|.||..++.+.+..-.. ..+.++....+||+++||+|+|.+..+
T Consensus 407 Nd-a~v~~~~~~~~~~~G~pTE~AL~vlaeKm~l~~~~~~~~s~~~~~~c~~~~~~~~~~~~elpFssdrK~Msv~c~~~ 485 (972)
T KOG0202|consen 407 ND-ATVEYNDADCYEKVGEPTEGALIVLAEKMGLPGTRSTNLSNEEASACNRVYSRLFKKIAELPFSSDRKSMSVKCSPA 485 (972)
T ss_pred hh-hhhhcCchhhHHhcCCchHHHHHHHHHHcCCCcchhhcccccccccchhHHHHhhhheeEeecccccceEEEEEecC
Confidence 54 33333333666778999999999999998865422 223456668999999999999999875
Q ss_pred CC--eEEEEEeCChhHHHhcccccccCCC-ccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCC-CC--------CC
Q 044020 359 AG--GMRAFCKGASEIVLSMCDKVVSDNG-EPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLND-SS--------NE 426 (563)
Q Consensus 359 ~~--~~~~~~kG~~~~il~~c~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~-~~--------~~ 426 (563)
.+ ++..|+||++|.++++|+.++..+| ..+|+++..++.+.+....++++|+||+++|+++.+. .. ..
T Consensus 486 ~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~~~pLt~~~re~il~~~~~~g~~gLRvLalA~~~~~~~~~~~~~l~~~s~ 565 (972)
T KOG0202|consen 486 HGQSGYKMFVKGAPESVLERCSTYYGSDGQTKVPLTQASRETILANVYEMGSEGLRVLALASKDSPGQVPDDQDLNDTSN 565 (972)
T ss_pred CCCccceEEecCChHHHHHhhhcEEccCCceeeeCcHHHHHHHHHHHHHHhhccceEEEEEccCCcccChhhhhhccccc
Confidence 44 5899999999999999988887766 5599999999999999999999999999999998774 21 22
Q ss_pred CCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC----ceeechhhhcCCC
Q 044020 427 NNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG----EAVEGPEFRNMSP 502 (563)
Q Consensus 427 ~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~----~~~~g~~~~~~~~ 502 (563)
....|.|++|+|++++.||+|++++++|+.|+++||+|+|+|||+..+|.++|+++|+...+. .+++|.+++.++.
T Consensus 566 ~~~~E~~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~ 645 (972)
T KOG0202|consen 566 RATAESDLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSD 645 (972)
T ss_pred ccccccceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCH
Confidence 346789999999999999999999999999999999999999999999999999999988765 7899999999987
Q ss_pred C---CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCCCC
Q 044020 503 A---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 503 ~---~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~~ 563 (563)
+ +...+..+|+|++|.+|.++|+.||+. |+.|+|.|||.||.|+|+.||+|||||++|+|
T Consensus 646 ~~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~-geivAMTGDGVNDApALK~AdIGIAMG~~GTd 708 (972)
T KOG0202|consen 646 EELDDAVRRVLVFARAEPQHKLKIVEALQSR-GEVVAMTGDGVNDAPALKKADIGIAMGISGTD 708 (972)
T ss_pred HHHHHHhhcceEEEecCchhHHHHHHHHHhc-CCEEEecCCCccchhhhhhcccceeecCCccH
Confidence 7 677888899999999999999999998 99999999999999999999999999999975
No 4
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=1.3e-92 Score=796.68 Aligned_cols=551 Identities=54% Similarity=0.793 Sum_probs=469.4
Q ss_pred chhhHHHHHHHHHHHHHHHhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCc
Q 044020 2 VTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEP 81 (563)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p 81 (563)
++++.+|+++++++++++..++.+++|+|||++++|++++|+|||+|.|++||+|||||+|++|+.+.||||+|||||.|
T Consensus 144 i~~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g~~l~VdES~LTGES~p 223 (941)
T TIGR01517 144 VTAVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGESDP 223 (941)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEcCcEEEEecccCCCCCc
Confidence 57789999999999998766788999999999999999999999999999999999999999997779999999999999
Q ss_pred ccccCC-CCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044020 82 RYMYEE-NPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIG 160 (563)
Q Consensus 82 ~~k~~~-~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (563)
+.|..+ .+++|+||.+.+|.+.++|++||.+|++|++.+.+..++ +++|+++.++++++++.++++.++++++++++.
T Consensus 224 v~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~ 302 (941)
T TIGR01517 224 IKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKLSELAGLIGKFGMGSAVLLFLVLSL 302 (941)
T ss_pred ccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999754 468999999999999999999999999999999988755 568999999999999999888888877776644
Q ss_pred HHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeeee
Q 044020 161 RFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCIC 240 (563)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i~ 240 (563)
.+......... ... ......+...|..++++++++|||+||++++++++.+.++|+++|+++|+++++|.||++|++|
T Consensus 303 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~mak~~ilvk~l~a~E~lg~v~~Ic 380 (941)
T TIGR01517 303 RYVFRIIRGDG-RDT-EEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMMKDNNLVRHLAACETMGSATAIC 380 (941)
T ss_pred HHHhhhccccc-ccc-chhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhCCCEEechHHhhhccCceEEE
Confidence 32221110000 000 0112356778899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHHHH
Q 044020 241 TDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILE 320 (563)
Q Consensus 241 ~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~ 320 (563)
||||||||+|+|.|.+++..+..+..+... ........+++..++.+|+......+..+..+..|+|+|.|+++
T Consensus 381 ~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~g~p~e~All~ 454 (941)
T TIGR01517 381 SDKTGTLTQNVMSVVQGYIGEQRFNVRDVL------RNVPKHVRNILVEGISLNSSSEEVVDRGGKRAFIGSKTECALLG 454 (941)
T ss_pred EcCcCceeeceEEEEEEEEecceEecCccc------ccCCHHHHHHHHHHHHhCCCCccccCCCCccccCCCccHHHHHH
Confidence 999999999999999998766543322110 01123344555566666655432222233346779999999999
Q ss_pred HHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHH
Q 044020 321 FGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITD 400 (563)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~ 400 (563)
++.+.+.+....+..+++++.+||++++|+|+++++.+++.+++++||+||.++++|+.++..+|...++++ .++++.+
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~msvv~~~~~~~~~~~~KGA~e~il~~c~~~~~~~g~~~~~~~-~~~~i~~ 533 (941)
T TIGR01517 455 FLLLLGRDYQEVRAEEKVVKIYPFNSERKFMSVVVKHSGGKVREFRKGASEIVLKPCRKRLDSNGEATPISD-DKDRCAD 533 (941)
T ss_pred HHHHcCCCHHHHHhhchhccccccCCCCCeEEEEEEeCCCcEEEEEECChHHHHHhhhHHhhcCCCcccCcH-HHHHHHH
Confidence 999888887777777888999999999999999999877789999999999999999987666787788887 7888999
Q ss_pred HHHHHHHHHHhHhHhhhhccCCCCCCC-CCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q 044020 401 VINGFASEALRTLCLAFKDLNDSSNEN-NIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIA 479 (563)
Q Consensus 401 ~~~~~~~~G~r~i~~a~~~l~~~~~~~-~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a 479 (563)
.++.++++|+|++++||++++.++... ...|++++|+|+++|+|++|++++++|++|+++|++++|+|||++.+|.++|
T Consensus 534 ~~~~~a~~G~Rvl~~A~~~~~~~~~~~~~~~e~~l~~lGli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA 613 (941)
T TIGR01517 534 VIEPLASDALRTICLAYRDFAPEEFPRKDYPNGGLTLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIA 613 (941)
T ss_pred HHHHHHhcCCEEEEEEEEecCccccccccccccCcEEEEEeeccCCCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHH
Confidence 999999999999999999987544322 2347899999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCceeechhhhcCCCC---CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEe
Q 044020 480 KECGILTSDGEAVEGPEFRNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556 (563)
Q Consensus 480 ~~lgi~~~~~~~~~g~~~~~~~~~---~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgia 556 (563)
+++||..++..+++|++++.+.++ ....+..+|+|++|+||.++|+.||+. |+.|+|+|||.||+|||++||||||
T Consensus 614 ~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~~iV~~lq~~-g~vVam~GDGvNDapALk~AdVGIA 692 (941)
T TIGR01517 614 RNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQLLVLMLKDM-GEVVAVTGDGTNDAPALKLADVGFS 692 (941)
T ss_pred HHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHHHHHHHHHHC-CCEEEEECCCCchHHHHHhCCccee
Confidence 999999888889999999887765 566777899999999999999999998 9999999999999999999999999
Q ss_pred ecCCCCC
Q 044020 557 MGIAGTE 563 (563)
Q Consensus 557 mg~~~~~ 563 (563)
||++|+|
T Consensus 693 mg~~gtd 699 (941)
T TIGR01517 693 MGISGTE 699 (941)
T ss_pred cCCCccH
Confidence 9977764
No 5
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=3.2e-90 Score=776.53 Aligned_cols=539 Identities=28% Similarity=0.444 Sum_probs=439.8
Q ss_pred chhhHHHHHHHHHHHHHHHhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCc
Q 044020 2 VTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEP 81 (563)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p 81 (563)
++.+.||+.++..++|.+. .+.+++|+|||++++|+++||||||||.+++||+|||||+|++++.|.||||+|||||.|
T Consensus 97 i~~~QE~~aekal~aL~~l-~~~~~~ViRdg~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi~~~~L~VDES~LTGES~p 175 (1053)
T TIGR01523 97 IGFIQEYKAEKTMDSLKNL-ASPMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLP 175 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCceEEEeCCeeeecCHhhCCCCCEEEECCCCEeeccEEEEEeCceEEEchhhcCCCCc
Confidence 4566777777777777764 456899999999999999999999999999999999999999998899999999999999
Q ss_pred ccccC--------------CCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCC--------------------
Q 044020 82 RYMYE--------------ENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGE-------------------- 127 (563)
Q Consensus 82 ~~k~~--------------~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~-------------------- 127 (563)
+.|.. ..+++|+||.|.+|.+.++|++||.+|.+|++.+.+.....
T Consensus 176 V~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1053)
T TIGR01523 176 VIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGLFQRPEKDDPNKRRKLNKWI 255 (1053)
T ss_pred eeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhhhccccccccccccchhhhccc
Confidence 99962 13679999999999999999999999999999998754321
Q ss_pred ---------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHH
Q 044020 128 ---------------DETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVT 192 (563)
Q Consensus 128 ---------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 192 (563)
.++|+++++++++.++..++++++++++++... . .+...+.++++
T Consensus 256 ~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~---~-----------------~~~~~~~~av~ 315 (1053)
T TIGR01523 256 LKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKF---D-----------------VDKEVAIYAIC 315 (1053)
T ss_pred ccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---h-----------------hhHHHHHHHHH
Confidence 249999999999998877777666655543210 0 11345667889
Q ss_pred hhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeeeecccccccccCceEEEEEEEcC-eeeeecCC--
Q 044020 193 IIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIAN-TISNVEGN-- 269 (563)
Q Consensus 193 ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~-~~~~~~~~-- 269 (563)
++++++|++||+.++++++.+.++|+++|+++|+++++|+||.+++||+|||||||+|+|.|.++|.++ ..+.....
T Consensus 316 l~Va~VPegLp~~vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i~~~~~~~~~~~~~~~ 395 (1053)
T TIGR01523 316 LAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIWIPRFGTISIDNSDD 395 (1053)
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEEEEcCCceEEecCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999764 12211100
Q ss_pred --Ccc-----------------------ccc-------c-cc-----ccHHHHHHHHHHHHhccCCceeec-CCCCceec
Q 044020 270 --NRK-----------------------DIL-------Q-SE-----ISERVLDITLQAIFQNTGSKVVKD-KDGKNSIL 310 (563)
Q Consensus 270 --~~~-----------------------~~~-------~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 310 (563)
... ... . .. ..+....++..+.+ |+.+....+ .++.....
T Consensus 396 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l-cn~a~~~~~~~~~~~~~~ 474 (1053)
T TIGR01523 396 AFNPNEGNVSGIPRFSPYEYSHNEAADQDILKEFKDELKEIDLPEDIDMDLFIKLLETAAL-ANIATVFKDDATDCWKAH 474 (1053)
T ss_pred CCCCcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHh-ccCCeeeccCCCCceeeC
Confidence 000 000 0 00 01122334433444 444443322 22333567
Q ss_pred CCccHHHHHHHHHHcCCChH------HH-------------------hhhceEEEEecCCCCceeEEEEEEcCCC-eEEE
Q 044020 311 GTPTESAILEFGLRLGGDFE------AQ-------------------RREFKIVKVEPFNSVRKKMSVLIALPAG-GMRA 364 (563)
Q Consensus 311 ~~~~e~al~~~~~~~~~~~~------~~-------------------~~~~~~~~~~~f~~~~~~~sviv~~~~~-~~~~ 364 (563)
|+|+|.|+++++.+.|++.. .. ...|+++..+||+++||||+++++.+++ .+++
T Consensus 475 GdptE~ALl~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pFds~rK~msvv~~~~~~~~~~~ 554 (1053)
T TIGR01523 475 GDPTEIAIHVFAKKFDLPHNALTGEEDLLKSNENDQSSLSQHNEKPGSAQFEFIAEFPFDSEIKRMASIYEDNHGETYNI 554 (1053)
T ss_pred cCccHHHHHHHHHHcCCCcccccchhhhhhhccccccccccccccccccccceEEEeccCCCCCeEEEEEEeCCCCEEEE
Confidence 99999999999998886421 11 2347899999999999999999987644 5889
Q ss_pred EEeCChhHHHhcccccccCCC-ccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCCC----------CCCCCCCC
Q 044020 365 FCKGASEIVLSMCDKVVSDNG-EPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSN----------ENNIPDSG 433 (563)
Q Consensus 365 ~~kG~~~~il~~c~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~----------~~~~~~~~ 433 (563)
|+||+||.|+++|+.....+| ...+++++.++++.+.+++|+++|+||+++|||+++..+. .....|.|
T Consensus 555 ~~KGApe~il~~c~~~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~GlRvLa~A~r~l~~~~~~~~~~~~~~~~~~~~e~~ 634 (1053)
T TIGR01523 555 YAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAFASKSFDKADNNDDQLKNETLNRATAESD 634 (1053)
T ss_pred EEeCChHHHHHhhhHhhcCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEEEEEECCchhccchhhhccccchhhhccC
Confidence 999999999999997665444 5678999999999999999999999999999999875421 12346899
Q ss_pred ceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC----------CCceeechhhhcCCCC
Q 044020 434 YTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTS----------DGEAVEGPEFRNMSPA 503 (563)
Q Consensus 434 ~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~----------~~~~~~g~~~~~~~~~ 503 (563)
++|+|+++|+|++|++++++|++|+++||+|+|+|||++.+|.++|+++||... ...+++|.+++.+.++
T Consensus 635 L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~ 714 (1053)
T TIGR01523 635 LEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDE 714 (1053)
T ss_pred CEEEEEEeeecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHH
Confidence 999999999999999999999999999999999999999999999999999754 3578999999888765
Q ss_pred ---CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCCCC
Q 044020 504 ---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 504 ---~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~~ 563 (563)
+...+..+|+|++|+||.++|+.+|+. |+.|+|+|||.||+|||++||||||||++|+|
T Consensus 715 ~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~-g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~ 776 (1053)
T TIGR01523 715 EVDDLKALCLVIARCAPQTKVKMIEALHRR-KAFCAMTGDGVNDSPSLKMANVGIAMGINGSD 776 (1053)
T ss_pred HHHHHhhcCeEEEecCHHHHHHHHHHHHhc-CCeeEEeCCCcchHHHHHhCCccEecCCCccH
Confidence 455667799999999999999999998 99999999999999999999999999977764
No 6
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=6.5e-90 Score=776.65 Aligned_cols=542 Identities=30% Similarity=0.435 Sum_probs=451.1
Q ss_pred chhhHHHHHHHHHHHHHHHhc---cCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCC
Q 044020 2 VTAISDYKQSLQFRDLDREKK---KIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQ 78 (563)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~---~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGe 78 (563)
++++..|.++++.++..+.++ +.+++|+|||++++|++++|+|||+|.|++||+|||||++++|+.+.||||+||||
T Consensus 116 i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~~~l~VdeS~LTGE 195 (997)
T TIGR01106 116 ITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQGCKVDNSSLTGE 195 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEccCcEEEccccCCC
Confidence 466667777777766655544 45899999999999999999999999999999999999999998789999999999
Q ss_pred CCcccccCCC---------CeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHH
Q 044020 79 SEPRYMYEEN---------PFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELF 149 (563)
Q Consensus 79 s~p~~k~~~~---------~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (563)
|.|+.|..++ +++|+||.+.+|.+.++|++||.+|.+|++.+.+..++.+++|+++.++++++++..++++
T Consensus 196 S~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~ 275 (997)
T TIGR01106 196 SEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKTPIAIEIEHFIHIITGVAVF 275 (997)
T ss_pred CCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999997543 4799999999999999999999999999999998887888999999999999998888777
Q ss_pred HHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchh
Q 044020 150 FSVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSA 229 (563)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~ 229 (563)
++++.++++... . ..+...+.+++++++++|||+||++++++++.+.++|+++|+++|++++
T Consensus 276 ~~~~~~~~~~~~--~----------------~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m~~~~ilvk~~~a 337 (997)
T TIGR01106 276 LGVSFFILSLIL--G----------------YTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEA 337 (997)
T ss_pred HHHHHHHHHHHh--c----------------CCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHCCcEecCcHH
Confidence 666655544211 1 1234567788899999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCC----
Q 044020 230 CETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDG---- 305 (563)
Q Consensus 230 le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 305 (563)
+|+||++|++|||||||||+|+|.|.+++.++..+..+.................+.+...+.+|+.+.+..+.++
T Consensus 338 iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~alcn~~~~~~~~~~~~~~ 417 (997)
T TIGR01106 338 VETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLCNRAVFKAGQENVPIL 417 (997)
T ss_pred HHHhcCCCEEEECCCCceecCceEEEEEEECCeEEecCCccCCCCccCCcccHHHHHHHHHHHHcCCCeeccccCCCccc
Confidence 9999999999999999999999999999988776543221110000001111223334444555555544332222
Q ss_pred CceecCCccHHHHHHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcC---CCeEEEEEeCChhHHHhccccccc
Q 044020 306 KNSILGTPTESAILEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALP---AGGMRAFCKGASEIVLSMCDKVVS 382 (563)
Q Consensus 306 ~~~~~~~~~e~al~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~---~~~~~~~~kG~~~~il~~c~~~~~ 382 (563)
.....|+|+|.|+++++.+.+.+....+..++.+..+||+++||+|+++++.. ++.+++|+||+||.|+++|+.++
T Consensus 418 ~~~~~gdp~E~ALl~~a~~~~~~~~~~~~~~~~v~~~pF~s~rK~m~~v~~~~~~~~~~~~~~~KGApe~Il~~c~~~~- 496 (997)
T TIGR01106 418 KRAVAGDASESALLKCIELCLGSVMEMRERNPKVVEIPFNSTNKYQLSIHENEDPRDPRHLLVMKGAPERILERCSSIL- 496 (997)
T ss_pred ccccCcChHHHHHHHHHHHhCCCHHHHHhhCceeEEeccCCCCceEEEEEeccCCCCceEEEEEeCChHHHHHHhhHHh-
Confidence 23567999999999999877767777778899999999999999999988643 34688999999999999999876
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCCCCC---------CCCCCCceEEEEecccCCCCcchHHH
Q 044020 383 DNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSNEN---------NIPDSGYTLIAVVGIKDPVRPGVKEA 453 (563)
Q Consensus 383 ~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~---------~~~~~~~~~lG~i~~~d~~~~~~~~~ 453 (563)
.+|+..+++++.++.+.+.+++++++|+|++++|||.++.++... +..|+|++|+|+++++||+|++++++
T Consensus 497 ~~g~~~~l~~~~~~~~~~~~~~~a~~GlRvla~A~k~l~~~~~~~~~~~~~~~~~~~e~~L~flGli~i~Dplr~~v~~a 576 (997)
T TIGR01106 497 IHGKEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLPDEQFPEGFQFDTDDVNFPTDNLCFVGLISMIDPPRAAVPDA 576 (997)
T ss_pred cCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEEeecCcccccccccccchhhhccccCcEEEEEEeccCCChHHHHHH
Confidence 468888999999999999999999999999999999886542211 23488999999999999999999999
Q ss_pred HHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCC------------------------CceeechhhhcCCCC---CCC
Q 044020 454 VQTCLEAGITVRMVTGDNINTARAIAKECGILTSD------------------------GEAVEGPEFRNMSPA---DII 506 (563)
Q Consensus 454 I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~------------------------~~~~~g~~~~~~~~~---~~~ 506 (563)
|++|+++|++|+|+|||++.+|.++|+++|+..++ ..+++|.+++.+.++ +..
T Consensus 577 I~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l~~~el~~~~ 656 (997)
T TIGR01106 577 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDEIL 656 (997)
T ss_pred HHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhCCHHHHHHHH
Confidence 99999999999999999999999999999996532 258999999888765 333
Q ss_pred cce--eEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCCCC
Q 044020 507 PKL--QVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 507 ~~~--~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~~ 563 (563)
.+. .||+|++|+||..+|+.+|+. |+.|+|+|||.||+|||++||||||||++|+|
T Consensus 657 ~~~~~~VfaR~sPeqK~~IV~~lq~~-g~vv~~~GDG~ND~paLk~AdVGiamg~~G~~ 714 (997)
T TIGR01106 657 KYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGVNDSPALKKADIGVAMGIAGSD 714 (997)
T ss_pred HhcCCEEEEECCHHHHHHHHHHHHHC-CCEEEEECCCcccHHHHhhCCcceecCCcccH
Confidence 333 499999999999999999998 99999999999999999999999999966764
No 7
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=3.2e-88 Score=758.24 Aligned_cols=549 Identities=35% Similarity=0.530 Sum_probs=449.2
Q ss_pred hhhHHHHHHHHHHHHHHHhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCcc
Q 044020 3 TAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPR 82 (563)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~ 82 (563)
+.+.+++.++..+++.+ ..+.+++|+|||+++.|++++|||||||.|++||+|||||+|++|+.+.||||+|||||.|+
T Consensus 53 ~~~qe~~a~~~~~~L~~-~~~~~~~ViRdg~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~~~l~VdeS~LTGES~pv 131 (917)
T TIGR01116 53 GVWQERNAEKAIEALKE-YESEHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLKTLRVDQSILTGESVSV 131 (917)
T ss_pred HHHHHHHHHHHHHHHhc-cCCCceEEEECCEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEecceEEEcccccCCCCcc
Confidence 44556666666666654 34668999999999999999999999999999999999999999987899999999999999
Q ss_pred cccCC------------CCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 044020 83 YMYEE------------NPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFF 150 (563)
Q Consensus 83 ~k~~~------------~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (563)
.|..+ ++++|+||.+.+|++.++|++||.+|.+|++.+.+..++.+++|+++.+++++.++..+.+++
T Consensus 132 ~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~~~~t~lq~~l~~~~~~l~~~~~~~ 211 (917)
T TIGR01116 132 NKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAEQEDTPLQKKLDEFGELLSKVIGLI 211 (917)
T ss_pred cccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99643 378999999999999999999999999999999998888889999999999999988877766
Q ss_pred HHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhh
Q 044020 151 SVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSAC 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~l 230 (563)
+++++++++..+... .....|. ..+...+..++++++++||++||++++++++.+.++|+++|+++|+++++
T Consensus 212 ~~i~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~i~l~v~~iP~~Lp~~vti~l~~~~~~m~~~~ilvk~~~~i 283 (917)
T TIGR01116 212 CILVWVINIGHFNDP----ALGGGWI----QGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKKNAIVRKLPSV 283 (917)
T ss_pred HHHHHHHHHHHhccc----cccchhH----HHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHHCCcEecCcHHH
Confidence 666555443221100 0001121 23556677788999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeecccccccccCceEEEEEEEcCeee------eecCCCc---ccccc-----ccccHHHHHHHHHHHHhccC
Q 044020 231 ETMGSASCICTDKTRMLTTNHMVVDKIWIANTIS------NVEGNNR---KDILQ-----SEISERVLDITLQAIFQNTG 296 (563)
Q Consensus 231 e~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~------~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~ 296 (563)
|+||++|++|||||||||+|+|+|.+++..+..+ ....... ..... ..........+..++..|+.
T Consensus 284 E~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lc~~ 363 (917)
T TIGR01116 284 ETLGCTTVICSDKTGTLTTNQMSVCKVVALDPSSSSLNEFCVTGTTYAPEGGVIKDDGPVAGGQDAGLEELATIAALCND 363 (917)
T ss_pred HhccCceEEEecCCccccCCeEEEEEEEecCCcccccceEEecCCccCCCccccccCCcccccchHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998865321 1111000 00000 00011223344445555665
Q ss_pred CceeecC-CCCceecCCccHHHHHHHHHHcCCChHH----------------HhhhceEEEEecCCCCceeEEEEEEcCC
Q 044020 297 SKVVKDK-DGKNSILGTPTESAILEFGLRLGGDFEA----------------QRREFKIVKVEPFNSVRKKMSVLIALPA 359 (563)
Q Consensus 297 ~~~~~~~-~~~~~~~~~~~e~al~~~~~~~~~~~~~----------------~~~~~~~~~~~~f~~~~~~~sviv~~~~ 359 (563)
+.+..++ ++.....|+|+|.|+++++.+.|.+... .++.+++++.+||+++||||+++++.+
T Consensus 364 ~~~~~~~~~~~~~~~gdp~E~ALl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pF~s~rK~msviv~~~- 442 (917)
T TIGR01116 364 SSLDFNERKGVYEKVGEATEAALKVLVEKMGLPATKNGVSSKRRPALGCNSVWNDKFKKLATLEFSRDRKSMSVLCKPS- 442 (917)
T ss_pred CeeeccccCCceeeccChhHHHHHHHHHHcCCCchhcccccccccccchhHHHHhhcceeeecccChhhCeEEEEEeeC-
Confidence 5543322 2223446899999999999988866432 245678999999999999999999864
Q ss_pred CeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHHHHHHH-HHHhHhHhhhhccCCCCC--------CCCCC
Q 044020 360 GGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFAS-EALRTLCLAFKDLNDSSN--------ENNIP 430 (563)
Q Consensus 360 ~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~G~r~i~~a~~~l~~~~~--------~~~~~ 430 (563)
+++++|+||+||.|+++|+.++.++|...+++++.++++.+.++++++ +|+||+++|||.++.+.. ..+.+
T Consensus 443 ~~~~~~~KGApe~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~~GlRvl~~A~k~~~~~~~~~~~~~~~~~~~~ 522 (917)
T TIGR01116 443 TGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFKDIPDPREEDLLSDPANFEAI 522 (917)
T ss_pred CcEEEEEcCChHHHHHhccceecCCCCeeeCCHHHHHHHHHHHHHHHhhcCCeEEEEEEEECCccccccccccchhhhhh
Confidence 668899999999999999988877788899999999999999999999 999999999999865321 11356
Q ss_pred CCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC----ceeechhhhcCCCC---
Q 044020 431 DSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG----EAVEGPEFRNMSPA--- 503 (563)
Q Consensus 431 ~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~----~~~~g~~~~~~~~~--- 503 (563)
|++++|+|+++++||+|++++++|++|+++|++++|+|||+..+|.++|+++|+..++. ..++|.+++.+..+
T Consensus 523 e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~ 602 (917)
T TIGR01116 523 ESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQR 602 (917)
T ss_pred cCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999976543 46788888877654
Q ss_pred CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCCCC
Q 044020 504 DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 504 ~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~~ 563 (563)
....+..+|+|++|+||.++++.+|+. |+.|+|+|||.||++||++||+||||| +|+|
T Consensus 603 ~~~~~~~v~ar~~P~~K~~iV~~lq~~-g~~va~iGDG~ND~~alk~AdVGia~g-~g~~ 660 (917)
T TIGR01116 603 AACRSAVLFSRVEPSHKSELVELLQEQ-GEIVAMTGDGVNDAPALKKADIGIAMG-SGTE 660 (917)
T ss_pred HhhhcCeEEEecCHHHHHHHHHHHHhc-CCeEEEecCCcchHHHHHhCCeeEECC-CCcH
Confidence 455667899999999999999999987 999999999999999999999999999 8764
No 8
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=4.7e-88 Score=749.83 Aligned_cols=505 Identities=27% Similarity=0.393 Sum_probs=427.2
Q ss_pred hHHHHHHHHHHHHHHHhccCeeEEEEC------CEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCC
Q 044020 5 ISDYKQSLQFRDLDREKKKIFIQVTRD------GQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQ 78 (563)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~V~r~------g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGe 78 (563)
+.+++.++..++|.+. .+.+++|+|| |++++|++++|+|||+|.|++||+|||||+|++|+++.||||+||||
T Consensus 141 ~qe~ra~~~~~~L~~l-~~~~a~ViR~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTGE 219 (902)
T PRK10517 141 IQEARSTKAADALKAM-VSNTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGE 219 (902)
T ss_pred HHHHHHHHHHHHHHhh-CCCeEEEEECCccCCCCeEEEEEHHhCCCCCEEEECCCCEEeeeEEEEEcCceEEEecCcCCC
Confidence 3444444445555544 3567999999 78999999999999999999999999999999998889999999999
Q ss_pred CCcccccCCC------------CeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHH
Q 044020 79 SEPRYMYEEN------------PFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKI 146 (563)
Q Consensus 79 s~p~~k~~~~------------~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (563)
|.|+.|..++ +++|+||.|.+|++.++|++||.+|++|++.+.+.+++.+++|+++.++++++++..+
T Consensus 220 S~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~v~~~~~~~t~lq~~~~~i~~~l~~~ 299 (902)
T PRK10517 220 SLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVSEQDSEPNAFQQGISRVSWLLIRF 299 (902)
T ss_pred CCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHH
Confidence 9999997543 4799999999999999999999999999999999988888999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeec
Q 044020 147 ELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRH 226 (563)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~ 226 (563)
+++++.++++++.+ .. ..+...+.+++++++++|||+||++++++++.+.++|+++|+++|+
T Consensus 300 ~~~~~~~v~~i~~~--~~----------------~~~~~~l~~alsv~V~~~Pe~LP~~vt~~la~g~~~mak~~ilVk~ 361 (902)
T PRK10517 300 MLVMAPVVLLINGY--TK----------------GDWWEAALFALSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVKR 361 (902)
T ss_pred HHHHHHHhhhHHHH--hc----------------CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCcEEec
Confidence 77766665554321 10 1245677889999999999999999999999999999999999999
Q ss_pred chhhhhcCCeeeeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCC
Q 044020 227 LSACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGK 306 (563)
Q Consensus 227 ~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (563)
++++|+||++|++|||||||||+|+|.|.++...... ..++++ ..+.. +....
T Consensus 362 l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~---------------~~~~ll---~~a~l-~~~~~-------- 414 (902)
T PRK10517 362 LDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGK---------------TSERVL---HSAWL-NSHYQ-------- 414 (902)
T ss_pred chhhhhccCCCEEEecCCCccccceEEEEEEecCCCC---------------CHHHHH---HHHHh-cCCcC--------
Confidence 9999999999999999999999999999886321110 011222 22222 22110
Q ss_pred ceecCCccHHHHHHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCc
Q 044020 307 NSILGTPTESAILEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGE 386 (563)
Q Consensus 307 ~~~~~~~~e~al~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~ 386 (563)
...+||+|.|+++++...+ .......++.+..+||++++|+|+++++..++.+.+++||+||.++++|+.+.. +|.
T Consensus 415 -~~~~~p~d~All~~a~~~~--~~~~~~~~~~~~~~pFds~~k~msvvv~~~~~~~~~~~KGa~e~il~~c~~~~~-~~~ 490 (902)
T PRK10517 415 -TGLKNLLDTAVLEGVDEES--ARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLICKGALEEILNVCSQVRH-NGE 490 (902)
T ss_pred -CCCCCHHHHHHHHHHHhcc--hhhhhhcCceEEEeeeCCCcceEEEEEEECCCeEEEEEeCchHHHHHhchhhhc-CCC
Confidence 1247999999999986543 122345678899999999999999999877777889999999999999997654 566
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCCCCCC-CCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEE
Q 044020 387 PVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSNENN-IPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVR 465 (563)
Q Consensus 387 ~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~~-~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~ 465 (563)
..+++++.++.+.+..+.++++|+|++++|||+++..+.... ..|.|++|+|+++|+||+||+++++|++|+++||+|+
T Consensus 491 ~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~aGI~v~ 570 (902)
T PRK10517 491 IVPLDDIMLRRIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGVTVK 570 (902)
T ss_pred eecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCccccccccccccCceeeehHhhhCcchhhHHHHHHHHHHCCCEEE
Confidence 788999999999999999999999999999998865433221 2377999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCC---CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCc
Q 044020 466 MVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGT 542 (563)
Q Consensus 466 i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~---~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ 542 (563)
|+|||++.+|.++|+++||. ...+++|.+++.++++ ....+..+|+|++|+||.++|+.||++ |+.|+|+|||.
T Consensus 571 miTGD~~~tA~~IA~~lGI~--~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~-G~vVam~GDGv 647 (902)
T PRK10517 571 ILTGDSELVAAKVCHEVGLD--AGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERIVTLLKRE-GHVVGFMGDGI 647 (902)
T ss_pred EEcCCCHHHHHHHHHHcCCC--ccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHHHHHHHHC-CCEEEEECCCc
Confidence 99999999999999999995 3578999999988766 556777899999999999999999998 99999999999
Q ss_pred cCHHHHhhCCceEeecCCCCC
Q 044020 543 NDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 543 ND~~~l~~a~vgiamg~~~~~ 563 (563)
||+|||++|||||||| +|+|
T Consensus 648 NDaPALk~ADVGIAmg-~gtd 667 (902)
T PRK10517 648 NDAPALRAADIGISVD-GAVD 667 (902)
T ss_pred chHHHHHhCCEEEEeC-CcCH
Confidence 9999999999999999 8875
No 9
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=3.9e-87 Score=747.97 Aligned_cols=525 Identities=34% Similarity=0.522 Sum_probs=439.2
Q ss_pred chhhHHHHHHHHHHHHHHHhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCc
Q 044020 2 VTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEP 81 (563)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p 81 (563)
++.+.+|+.++..+++.+. .+.+++|+|||+++.|+++||+|||||.|++||+|||||+|++|+.+.||||+|||||.|
T Consensus 96 i~~~qe~~a~~~l~~L~~l-~~~~~~ViRdg~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~l~VDES~LTGES~p 174 (884)
T TIGR01522 96 VGFVQEYRSEKSLEALNKL-VPPECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDESNLTGETTP 174 (884)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCeeEEEECCEEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCceEEEcccccCCCcc
Confidence 3455666666666666553 466899999999999999999999999999999999999999998789999999999999
Q ss_pred ccccCCC-------------CeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHH
Q 044020 82 RYMYEEN-------------PFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIEL 148 (563)
Q Consensus 82 ~~k~~~~-------------~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (563)
+.|..++ +++|+||.+.+|.+.++|++||.+|.+|++.+.+..++.+++|+++.++++++++..+++
T Consensus 175 v~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt~lq~~l~~l~~~~~~~~~ 254 (884)
T TIGR01522 175 VSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKTPLQKSMDLLGKQLSLVSF 254 (884)
T ss_pred eecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9997542 589999999999999999999999999999999998888899999999999998877665
Q ss_pred HHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecch
Q 044020 149 FFSVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLS 228 (563)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~ 228 (563)
+++++++++.+ +.. ..+...+..++++++++|||+||++++++++.+.++|+++|+++|+++
T Consensus 255 ~~~~~~~~~~~---~~~---------------~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ak~~ilvk~~~ 316 (884)
T TIGR01522 255 GVIGVICLVGW---FQG---------------KDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAIVRKLP 316 (884)
T ss_pred HHHHHHHHHHH---Hhc---------------CCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhhcCCcccchH
Confidence 44433333221 110 134567888899999999999999999999999999999999999999
Q ss_pred hhhhcCCeeeeecccccccccCceEEEEEEEcCeeeee-cCC---Cccc------cccccccHHHHHHHHHHHHhccCCc
Q 044020 229 ACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNV-EGN---NRKD------ILQSEISERVLDITLQAIFQNTGSK 298 (563)
Q Consensus 229 ~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~-~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (563)
++|.||++|++|||||||||+|+|.|.+++..+..+.. ... .... ...........+++..+.+|+ .+.
T Consensus 317 a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~ 395 (884)
T TIGR01522 317 SVETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAGNLCN-NAK 395 (884)
T ss_pred HHHhccCccEEEecCccccccCeEEEEEEEecCceEeeccCCccCCCCcccccccccccccCHHHHHHHHHHhhhC-CCe
Confidence 99999999999999999999999999999876543211 000 0000 000001122233443344443 333
Q ss_pred eeecCCCCceecCCccHHHHHHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcC-CCeEEEEEeCChhHHHhcc
Q 044020 299 VVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALP-AGGMRAFCKGASEIVLSMC 377 (563)
Q Consensus 299 ~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~-~~~~~~~~kG~~~~il~~c 377 (563)
.... ..+..|||+|.|+++++.+.+.+ ..+..++.++.+||++++|+|+++++.. ++++++++||+||.++.+|
T Consensus 396 ~~~~---~~~~~g~p~e~All~~~~~~~~~--~~~~~~~~~~~~pF~s~~k~m~v~~~~~~~~~~~~~~KGape~il~~c 470 (884)
T TIGR01522 396 FRNE---ADTLLGNPTDVALIELLMKFGLD--DLRETYIRVAEVPFSSERKWMAVKCVHRQDRSEMCFMKGAYEQVLKYC 470 (884)
T ss_pred ecCC---CCCcCCChHHHHHHHHHHHcCcH--hHHhhCcEEeEeCCCCCCCeEEEEEEEcCCCeEEEEEeCChHHHHHhh
Confidence 2211 12345899999999999887653 4445688999999999999999998764 4678999999999999999
Q ss_pred cccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHH
Q 044020 378 DKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTC 457 (563)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l 457 (563)
+.++..+|...+++++.++++.+..+.++++|+|++++||+.+ +.+++|+|+++|+|++|++++++|++|
T Consensus 471 ~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~G~rvl~~A~~~~----------~~~l~~lGli~l~Dp~r~~~~~~i~~l 540 (884)
T TIGR01522 471 TYYQKKDGKTLTLTQQQRDVIQEEAAEMASAGLRVIAFASGPE----------KGQLTFLGLVGINDPPRPGVKEAVTTL 540 (884)
T ss_pred hhhhhcCCCeeeCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcC----------CCCeEEEEEEeccCcchhHHHHHHHHH
Confidence 9888777888889999999999999999999999999999875 367899999999999999999999999
Q ss_pred HhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCC---CCCcceeEEEecChhhHHHHHHHHHHhcCCE
Q 044020 458 LEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEV 534 (563)
Q Consensus 458 ~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~---~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~ 534 (563)
+++|++++|+|||++.+|.++|+++|+......+++|.+++.+.++ +...+..+|+|++|++|..+++.+|+. |+.
T Consensus 541 ~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~~iv~~lq~~-g~~ 619 (884)
T TIGR01522 541 ITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQKR-GDV 619 (884)
T ss_pred HHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHHHHHHHHHHC-CCE
Confidence 9999999999999999999999999998877788999999887765 567788899999999999999999998 999
Q ss_pred EEEEcCCccCHHHHhhCCceEeecCCCC
Q 044020 535 VAVTGDGTNDASALHEADIGLAMGIAGT 562 (563)
Q Consensus 535 v~~iGDg~ND~~~l~~a~vgiamg~~~~ 562 (563)
|+|+|||.||+|||++||||||||.+|+
T Consensus 620 v~mvGDGvND~pAl~~AdVGia~g~~g~ 647 (884)
T TIGR01522 620 VAMTGDGVNDAPALKLADIGVAMGQTGT 647 (884)
T ss_pred EEEECCCcccHHHHHhCCeeEecCCCcC
Confidence 9999999999999999999999995555
No 10
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=4.8e-87 Score=742.58 Aligned_cols=505 Identities=26% Similarity=0.385 Sum_probs=427.6
Q ss_pred hhHHHHHHHHHHHHHHHhccCeeEEEE------CCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcC
Q 044020 4 AISDYKQSLQFRDLDREKKKIFIQVTR------DGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSG 77 (563)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~~~~~~~V~r------~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTG 77 (563)
.+.+++.++...++.+. .+..++|+| ||++++|++++|+|||+|.|++||+|||||+|++|+++.||||+|||
T Consensus 106 ~~~e~~a~ka~~~L~~l-~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~g~~l~VDES~LTG 184 (867)
T TIGR01524 106 FIQESRAERAAYALKNM-VKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVISARDLFINQSALTG 184 (867)
T ss_pred HHHHHHHHHHHHHHhhh-ccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEecCceEEEcccccC
Confidence 34455555555555554 456799999 99999999999999999999999999999999999888999999999
Q ss_pred CCCcccccCCC------------CeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHH
Q 044020 78 QSEPRYMYEEN------------PFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGK 145 (563)
Q Consensus 78 es~p~~k~~~~------------~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (563)
||.|+.|..++ +++|+||.+.+|.++++|++||.+|++|++.+.+.+ ..+++|+++.++++++++..
T Consensus 185 ES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~-~~~~t~lq~~~~~i~~~~~~ 263 (867)
T TIGR01524 185 ESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATE-RRGQTAFDKGVKSVSKLLIR 263 (867)
T ss_pred CCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHH
Confidence 99999997653 579999999999999999999999999999999988 67789999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeee
Q 044020 146 IELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVR 225 (563)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k 225 (563)
+++++++++++++.+ .. ..+...+.+++++++++|||+||++++++++.+.++|+++|+++|
T Consensus 264 ~~~~~~~i~~~~~~~--~~----------------~~~~~~~~~al~l~v~~iP~~Lp~~vt~~la~g~~~mak~~ilvk 325 (867)
T TIGR01524 264 FMLVMVPVVLMINGL--MK----------------GDWLEAFLFALAVAVGLTPEMLPMIVSSNLAKGAINMSKKKVIVK 325 (867)
T ss_pred HHHHHHHHheehHHH--hc----------------CCHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhCCcEEc
Confidence 877777666554321 10 124567888899999999999999999999999999999999999
Q ss_pred cchhhhhcCCeeeeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCC
Q 044020 226 HLSACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDG 305 (563)
Q Consensus 226 ~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (563)
+++++|.||++|++|||||||||+|+|.|.+++..... ..++. +..+.+ +....
T Consensus 326 ~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~---------------~~~~~---l~~a~l-~~~~~------- 379 (867)
T TIGR01524 326 ELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGE---------------TSERV---LKMAWL-NSYFQ------- 379 (867)
T ss_pred cchhhhhccCccEEEecCCCccccCeEEEEEEecCCCC---------------CHHHH---HHHHHH-hCCCC-------
Confidence 99999999999999999999999999999987522110 01122 222222 22111
Q ss_pred CceecCCccHHHHHHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCC
Q 044020 306 KNSILGTPTESAILEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNG 385 (563)
Q Consensus 306 ~~~~~~~~~e~al~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~ 385 (563)
..++||+|.|+++++.... ....+..++.++.+||++++|+|+++++.+++.+++++||+|+.++++|+.+.. +|
T Consensus 380 --~~~~~p~~~Al~~~~~~~~--~~~~~~~~~~~~~~pF~s~~k~ms~~v~~~~~~~~~~~KGa~e~il~~c~~~~~-~~ 454 (867)
T TIGR01524 380 --TGWKNVLDHAVLAKLDESA--ARQTASRWKKVDEIPFDFDRRRLSVVVENRAEVTRLICKGAVEEMLTVCTHKRF-GG 454 (867)
T ss_pred --CCCCChHHHHHHHHHHhhc--hhhHhhcCceEEEeccCCCcCEEEEEEEcCCceEEEEEeCcHHHHHHhchhhhc-CC
Confidence 1246999999999987542 233445688899999999999999999876667889999999999999987644 56
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCCCCC-CCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeE
Q 044020 386 EPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSNEN-NIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITV 464 (563)
Q Consensus 386 ~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~-~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v 464 (563)
...+++++.++++.+.++.++++|+|++++|||+++..+... ...+.+++|+|+++|+|++|++++++|++|+++||++
T Consensus 455 ~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~~~~aI~~l~~aGI~v 534 (867)
T TIGR01524 455 AVVTLSESEKSELQDMTAEMNRQGIRVIAVATKTLKVGEADFTKTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGINV 534 (867)
T ss_pred ceecCCHHHHHHHHHHHHHHHhcCCEEEEEEEeccCcccccccccccCCcEEEEEEEeeCCCchhHHHHHHHHHHCCCEE
Confidence 778899999999999999999999999999999887643221 1247889999999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCC---CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCC
Q 044020 465 RMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDG 541 (563)
Q Consensus 465 ~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~---~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg 541 (563)
+|+|||++.+|.++|+++||.. ..++.|.+++.+..+ +...+..+|+|++|+||.++|+.+|++ |+.|+|+|||
T Consensus 535 vmiTGD~~~tA~aIA~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~-G~vVam~GDG 611 (867)
T TIGR01524 535 KVLTGDNEIVTARICQEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRIIGLLKKA-GHTVGFLGDG 611 (867)
T ss_pred EEEcCCCHHHHHHHHHHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHHHHHHHhC-CCEEEEECCC
Confidence 9999999999999999999964 468899999887665 566778899999999999999999998 9999999999
Q ss_pred ccCHHHHhhCCceEeecCCCCC
Q 044020 542 TNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 542 ~ND~~~l~~a~vgiamg~~~~~ 563 (563)
.||+|||++|||||||| +|+|
T Consensus 612 vNDapALk~AdVGIAmg-~gtd 632 (867)
T TIGR01524 612 INDAPALRKADVGISVD-TAAD 632 (867)
T ss_pred cccHHHHHhCCEEEEeC-CccH
Confidence 99999999999999999 8874
No 11
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=3.5e-87 Score=744.17 Aligned_cols=505 Identities=25% Similarity=0.397 Sum_probs=426.3
Q ss_pred hhHHHHHHHHHHHHHHHhccCeeEEEEC------CEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcC
Q 044020 4 AISDYKQSLQFRDLDREKKKIFIQVTRD------GQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSG 77 (563)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~~~~~~~V~r~------g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTG 77 (563)
.+.+++.++...++.+. .+..++|+|| |+++.|++++|+|||+|.|++||+|||||+|++|+++.||||+|||
T Consensus 129 ~~qe~~a~~a~~~L~~l-~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTG 207 (903)
T PRK15122 129 FWQEFRSNKAAEALKAM-VRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESRDLFISQAVLTG 207 (903)
T ss_pred HHHHHHHHHHHHHHHhc-cCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcCceEEEccccCC
Confidence 34455555555555544 3567999999 4899999999999999999999999999999999888999999999
Q ss_pred CCCcccccC----------------------CCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHH
Q 044020 78 QSEPRYMYE----------------------ENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVK 135 (563)
Q Consensus 78 es~p~~k~~----------------------~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~ 135 (563)
||.|+.|.. .++++|+||.|.+|++.++|++||.+|++|++.+.+.. ...++|+++.
T Consensus 208 ES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~-~~~~t~l~~~ 286 (903)
T PRK15122 208 EALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVG-TRAQTAFDRG 286 (903)
T ss_pred CCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcC-CCCCCcHHHH
Confidence 999999963 12689999999999999999999999999999999877 6668899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHH
Q 044020 136 LNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMK 215 (563)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~ 215 (563)
++++.+++..++++++.+++++..+ .. .++...+.+++++++++|||+||++++++++.+..
T Consensus 287 l~~i~~~l~~~~~~~~~~v~~~~~~--~~----------------~~~~~~l~~aisl~V~~~Pe~Lp~~vt~~La~g~~ 348 (903)
T PRK15122 287 VNSVSWLLIRFMLVMVPVVLLINGF--TK----------------GDWLEALLFALAVAVGLTPEMLPMIVSSNLAKGAI 348 (903)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh--cc----------------CCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 9999998887766655544433211 10 13456788899999999999999999999999999
Q ss_pred HHhhCCCeeecchhhhhcCCeeeeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhcc
Q 044020 216 KLMNDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNT 295 (563)
Q Consensus 216 ~l~~~~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (563)
+|+++|+++|+++++|+||++|++|||||||||+|+|.|.+++..+.. ..++.+.. +.+ +.
T Consensus 349 ~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~---------------~~~~~l~~---a~l-~s 409 (903)
T PRK15122 349 AMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGR---------------KDERVLQL---AWL-NS 409 (903)
T ss_pred HHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCC---------------ChHHHHHH---HHH-hC
Confidence 999999999999999999999999999999999999999997643221 01222222 222 21
Q ss_pred CCceeecCCCCceecCCccHHHHHHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHh
Q 044020 296 GSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLS 375 (563)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~ 375 (563)
.. ....+||+|.|+++++.+.+.. .....++.+..+||++.+++|+++++..++++++++||+|+.+++
T Consensus 410 ~~---------~~~~~~p~e~All~~a~~~~~~--~~~~~~~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KGa~e~il~ 478 (903)
T PRK15122 410 FH---------QSGMKNLMDQAVVAFAEGNPEI--VKPAGYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKGAVEEMLA 478 (903)
T ss_pred CC---------CCCCCChHHHHHHHHHHHcCch--hhhhcCceEEEeeeCCCcCEEEEEEEcCCCcEEEEECCcHHHHHH
Confidence 10 0125799999999999876643 233467889999999999999999987677889999999999999
Q ss_pred cccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCCCC---CCCCCCCceEEEEecccCCCCcchHH
Q 044020 376 MCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSNE---NNIPDSGYTLIAVVGIKDPVRPGVKE 452 (563)
Q Consensus 376 ~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~---~~~~~~~~~~lG~i~~~d~~~~~~~~ 452 (563)
+|+++.. +|...+++++.++++.+..+.++++|+|++++|||+++..+.. ....|.|++|+|+++|+|++|+++++
T Consensus 479 ~c~~~~~-~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~a~~ 557 (903)
T PRK15122 479 VATHVRD-GDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRAQYSTADERDLVIRGFLTFLDPPKESAAP 557 (903)
T ss_pred hchhhhc-CCCeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCccccccccccccccCcEEEEEEeccCccHHHHHH
Confidence 9997654 5677889999999999999999999999999999988654321 12357889999999999999999999
Q ss_pred HHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCC---CCCcceeEEEecChhhHHHHHHHHHH
Q 044020 453 AVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRN 529 (563)
Q Consensus 453 ~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~---~~~~~~~v~~~~~p~~K~~~v~~l~~ 529 (563)
+|++|+++||+|+|+|||++.+|.++|+++||.. ..+++|.+++.++++ ....+..+|+|++|+||.++|+.||+
T Consensus 558 aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~ 635 (903)
T PRK15122 558 AIAALRENGVAVKVLTGDNPIVTAKICREVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQA 635 (903)
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999963 468999999988776 55677789999999999999999999
Q ss_pred hcCCEEEEEcCCccCHHHHhhCCceEeecCCCCC
Q 044020 530 TFGEVVAVTGDGTNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 530 ~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~~ 563 (563)
+ |+.|+|+|||.||+|||++|||||||| +|+|
T Consensus 636 ~-G~vVamtGDGvNDaPALk~ADVGIAmg-~gtd 667 (903)
T PRK15122 636 N-GHTVGFLGDGINDAPALRDADVGISVD-SGAD 667 (903)
T ss_pred C-CCEEEEECCCchhHHHHHhCCEEEEeC-cccH
Confidence 8 999999999999999999999999999 8875
No 12
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=1.2e-85 Score=722.59 Aligned_cols=482 Identities=26% Similarity=0.422 Sum_probs=404.0
Q ss_pred hhHHHHHHHHHHHHHHHhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCccc
Q 044020 4 AISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRY 83 (563)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~ 83 (563)
.+.+++.++..+++.+ ..+.+++|+|||++++|++++|+|||+|.|++||+|||||+|++|+.+.||||+|||||.|+.
T Consensus 73 ~~qe~~a~~~~~~L~~-~~~~~~~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~g~~~~VDeS~LTGES~PV~ 151 (755)
T TIGR01647 73 FIEENKAGNAVEALKQ-SLAPKARVLRDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGESLPVT 151 (755)
T ss_pred HHHHHHHHHHHHHHHh-hCCCeEEEEECCEEEEEEhhhCcCCCEEEECCCCEEeceEEEEecCceEEEcccccCCccceE
Confidence 3444444444455543 346789999999999999999999999999999999999999999867999999999999999
Q ss_pred ccCCCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044020 84 MYEENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFL 163 (563)
Q Consensus 84 k~~~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (563)
|..++ .+|+||.+.+|++.++|++||.+|++|++.+.+.+++.+++|+++.+++++.++.++++++++++++++++..
T Consensus 152 K~~~~-~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~- 229 (755)
T TIGR01647 152 KKTGD-IAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIGLFLIVLIGVLVLIELVVLFFGR- 229 (755)
T ss_pred eccCC-eeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 98654 5999999999999999999999999999999999888888999999999999998887777766665543211
Q ss_pred hccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeeeeccc
Q 044020 164 GEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCICTDK 243 (563)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i~~DK 243 (563)
. .++...+.+++++++++|||+||++++++++.+.++|+|+|+++|+++++|.||.+|++||||
T Consensus 230 ~----------------~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilvk~l~alE~lg~v~~i~~DK 293 (755)
T TIGR01647 230 G----------------ESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLTAIEELAGMDILCSDK 293 (755)
T ss_pred C----------------CCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEEcccHHHHhccCCcEEEecC
Confidence 0 134667888999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHHHHHHH
Q 044020 244 TRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFGL 323 (563)
Q Consensus 244 TGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~ 323 (563)
|||||+|+|.|.+++..+..+ ..++ .+..+.+++. ...+||+|.|+++++.
T Consensus 294 TGTLT~~~~~v~~~~~~~~~~--------------~~~~---~l~~a~~~~~------------~~~~~pi~~Ai~~~~~ 344 (755)
T TIGR01647 294 TGTLTLNKLSIDEILPFFNGF--------------DKDD---VLLYAALASR------------EEDQDAIDTAVLGSAK 344 (755)
T ss_pred CCccccCceEEEEEEecCCCC--------------CHHH---HHHHHHHhCC------------CCCCChHHHHHHHHHH
Confidence 999999999999988653210 0112 2222333321 1236999999999886
Q ss_pred HcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCC-CeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHH
Q 044020 324 RLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPA-GGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVI 402 (563)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~-~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~ 402 (563)
+.+ ..+..++.++.+||++.+|+|+++++.++ ++++.++||+|+.+++.|+.. ++.++++.+.+
T Consensus 345 ~~~----~~~~~~~~~~~~pf~~~~k~~~~~v~~~~~g~~~~~~kGa~e~il~~c~~~-----------~~~~~~~~~~~ 409 (755)
T TIGR01647 345 DLK----EARDGYKVLEFVPFDPVDKRTEATVEDPETGKRFKVTKGAPQVILDLCDNK-----------KEIEEKVEEKV 409 (755)
T ss_pred HhH----HHHhcCceEEEeccCCCCCeEEEEEEeCCCceEEEEEeCChHHHHHhcCCc-----------HHHHHHHHHHH
Confidence 532 23446788999999999999999988754 667788999999999999731 34456778888
Q ss_pred HHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHc
Q 044020 403 NGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKEC 482 (563)
Q Consensus 403 ~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~l 482 (563)
++++.+|+|++++|+++ .+.+++|+|+++|+|++||+++++|++|+++|++++|+|||++.+|.++|+++
T Consensus 410 ~~~~~~G~rvl~vA~~~----------~e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l 479 (755)
T TIGR01647 410 DELASRGYRALGVARTD----------EEGRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRL 479 (755)
T ss_pred HHHHhCCCEEEEEEEEc----------CCCCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc
Confidence 99999999999999973 25789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeechhh------hcCCCC---CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCc
Q 044020 483 GILTSDGEAVEGPEF------RNMSPA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADI 553 (563)
Q Consensus 483 gi~~~~~~~~~g~~~------~~~~~~---~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~v 553 (563)
||... +++++++ +.++.+ +...+..+|+|++|+||.++|+.+|++ |+.|+|+|||.||+|||++|||
T Consensus 480 GI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~Pe~K~~iV~~lq~~-G~~VamvGDGvNDapAL~~AdV 555 (755)
T TIGR01647 480 GLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFAEVFPEHKYEIVEILQKR-GHLVGMTGDGVNDAPALKKADV 555 (755)
T ss_pred CCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecCHHHHHHHHHHHHhc-CCEEEEEcCCcccHHHHHhCCe
Confidence 99752 3334333 233322 345566799999999999999999998 9999999999999999999999
Q ss_pred eEeecCCCCC
Q 044020 554 GLAMGIAGTE 563 (563)
Q Consensus 554 giamg~~~~~ 563 (563)
||||| +|+|
T Consensus 556 GIAm~-~gtd 564 (755)
T TIGR01647 556 GIAVA-GATD 564 (755)
T ss_pred eEEec-CCcH
Confidence 99999 8864
No 13
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=2.7e-84 Score=735.73 Aligned_cols=510 Identities=25% Similarity=0.384 Sum_probs=402.9
Q ss_pred HHHHHHHHHHHHHHHh-ccCeeEEEECCEEEEeecCCcccCcEEEeC--CCCeeeceEEEEeeCceEEEeccCcCCCCcc
Q 044020 6 SDYKQSLQFRDLDREK-KKIFIQVTRDGQRQKVCTYDLVVGDIVHLS--IGDQVPAYGIFISGHSLLIDESSLSGQSEPR 82 (563)
Q Consensus 6 ~~~~~~~~~~~l~~~~-~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~--~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~ 82 (563)
.-|++.++.+++.+.. ++..++|+|||+|++|+++||+|||||.|+ +|++|||||+|++|+ +.||||+|||||.|+
T Consensus 210 ~~~~~~k~~~~L~~~~~~~~~v~V~Rdg~~~~I~s~eLvpGDiv~l~~~~g~~iPaD~~ll~g~-~~VdES~LTGES~Pv 288 (1054)
T TIGR01657 210 SVYQIRKQMQRLRDMVHKPQSVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSGS-CIVNESMLTGESVPV 288 (1054)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEECCEEEEEEcccCCCCCEEEEecCCCCEecceEEEEeCc-EEEecccccCCccce
Confidence 3344444555565543 356899999999999999999999999999 999999999999996 699999999999999
Q ss_pred cccCC-----------------CCeEEecceeec-------CcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHH
Q 044020 83 YMYEE-----------------NPFLLAGTKVQG-------GSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNG 138 (563)
Q Consensus 83 ~k~~~-----------------~~~i~~Gt~v~~-------g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~ 138 (563)
.|... .+++|+||.+.+ |.+.++|++||.+|..|++.+.+...+..++++++...+
T Consensus 289 ~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T~~G~i~~~i~~~~~~~~~~~~~~~~ 368 (1054)
T TIGR01657 289 LKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFSTSKGQLVRSILYPKPRVFKFYKDSFK 368 (1054)
T ss_pred ecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccccchHHHHHhhCCCCCCCchHHHHHH
Confidence 98641 347999999985 789999999999999999999998877778888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHh
Q 044020 139 VATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLM 218 (563)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~ 218 (563)
+..++..++ ++.+++++...+.. ...+...+..++.++++++|++||++++++++.+.++|+
T Consensus 369 ~~~~l~~~a----~i~~i~~~~~~~~~--------------~~~~~~~~l~~l~iiv~~vP~~LP~~~ti~l~~~~~rL~ 430 (1054)
T TIGR01657 369 FILFLAVLA----LIGFIYTIIELIKD--------------GRPLGKIILRSLDIITIVVPPALPAELSIGINNSLARLK 430 (1054)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHc--------------CCcHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHH
Confidence 655543332 22222221111110 014566788889999999999999999999999999999
Q ss_pred hCCCeeecchhhhhcCCeeeeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCc
Q 044020 219 NDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSK 298 (563)
Q Consensus 219 ~~~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (563)
++|+++|+++++|.+|++|++|||||||||+|+|.|.+++..+........ ..+ ........+..++..||...
T Consensus 431 k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~a~C~~~~ 504 (1054)
T TIGR01657 431 KKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQEFLKI-VTE-----DSSLKPSITHKALATCHSLT 504 (1054)
T ss_pred HCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEecccCccccccc-ccc-----ccccCchHHHHHHHhCCeeE
Confidence 999999999999999999999999999999999999999875432110000 000 00011223344556666654
Q ss_pred eeecCCCCceecCCccHHHHHHHHHHc-CC--C--hHH----------HhhhceEEEEecCCCCceeEEEEEEcCC-CeE
Q 044020 299 VVKDKDGKNSILGTPTESAILEFGLRL-GG--D--FEA----------QRREFKIVKVEPFNSVRKKMSVLIALPA-GGM 362 (563)
Q Consensus 299 ~~~~~~~~~~~~~~~~e~al~~~~~~~-~~--~--~~~----------~~~~~~~~~~~~f~~~~~~~sviv~~~~-~~~ 362 (563)
... + ...|||+|.|+++++... .. + ... ....+++++.+||+|++||||++++.++ +.+
T Consensus 505 ~~~---~--~~~Gdp~E~al~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~il~~~pF~S~~krMsvvv~~~~~~~~ 579 (1054)
T TIGR01657 505 KLE---G--KLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRFQFSSALQRMSVIVSTNDERSP 579 (1054)
T ss_pred EEC---C--EEecCHHHHHHHHhCCCEEECCCCcccccccccceeccCCCceEEEEEEEeecCCCCEEEEEEEEcCCCeE
Confidence 322 1 577999999999986321 11 0 000 0246889999999999999999998755 567
Q ss_pred EEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCC------CCCCCCCCCceE
Q 044020 363 RAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSS------NENNIPDSGYTL 436 (563)
Q Consensus 363 ~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~------~~~~~~~~~~~~ 436 (563)
++++||+||.|+++|+.. ..++.+.+.++.++++|+||+++|||+++..+ ..++..|.|++|
T Consensus 580 ~~~~KGApE~Il~~c~~~------------~~p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~f 647 (1054)
T TIGR01657 580 DAFVKGAPETIQSLCSPE------------TVPSDYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTF 647 (1054)
T ss_pred EEEEECCHHHHHHHcCCc------------CCChhHHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceE
Confidence 899999999999999731 12356778899999999999999999987432 123467899999
Q ss_pred EEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC---------------------------
Q 044020 437 IAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG--------------------------- 489 (563)
Q Consensus 437 lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~--------------------------- 489 (563)
+|+++|+|++|++++++|++|+++||+++|+|||++.+|.++|+++||..++.
T Consensus 648 lGli~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1054)
T TIGR01657 648 LGFIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIP 727 (1054)
T ss_pred EEEEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCccc
Confidence 99999999999999999999999999999999999999999999999965432
Q ss_pred --------------------------ceeechhhhcCC---CC---CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEE
Q 044020 490 --------------------------EAVEGPEFRNMS---PA---DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAV 537 (563)
Q Consensus 490 --------------------------~~~~g~~~~~~~---~~---~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~ 537 (563)
.+++|+.++.+. .+ ++..+..||||++|+||..+|+.||+. |+.|+|
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~-g~~V~m 806 (1054)
T TIGR01657 728 FASTQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKL-DYTVGM 806 (1054)
T ss_pred cccccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhC-CCeEEE
Confidence 345555554321 11 455677899999999999999999998 999999
Q ss_pred EcCCccCHHHHhhCCceEeec
Q 044020 538 TGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 538 iGDg~ND~~~l~~a~vgiamg 558 (563)
+|||.||++||++||||||||
T Consensus 807 ~GDG~ND~~ALK~AdVGIam~ 827 (1054)
T TIGR01657 807 CGDGANDCGALKQADVGISLS 827 (1054)
T ss_pred EeCChHHHHHHHhcCcceeec
Confidence 999999999999999999999
No 14
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=1.5e-78 Score=644.98 Aligned_cols=451 Identities=25% Similarity=0.322 Sum_probs=368.4
Q ss_pred hhhHHHHHHHHHHHHHHHhccCeeEEEECCE-EEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCc
Q 044020 3 TAISDYKQSLQFRDLDREKKKIFIQVTRDGQ-RQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEP 81 (563)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~-~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p 81 (563)
++..+++.+++..+|.+..++.+++|+|||. +++|++++|+|||+|.|++||+|||||+|++|.. .||||+|||||.|
T Consensus 83 e~~ae~ra~~~~~sL~~l~~~~~a~vir~g~~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~vieG~a-~VDESaLTGES~P 161 (679)
T PRK01122 83 EALAEGRGKAQADSLRGAKKDTFARKLREPGAAEEVPATELRKGDIVLVEAGEIIPADGEVIEGVA-SVDESAITGESAP 161 (679)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEECCCEEEEEEHHHcCCCCEEEEcCCCEEEEEEEEEEccE-EEEcccccCCCCc
Confidence 3455666666666776655445799999988 8999999999999999999999999999999975 9999999999999
Q ss_pred ccccCCCC--eEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044020 82 RYMYEENP--FLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLI 159 (563)
Q Consensus 82 ~~k~~~~~--~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 159 (563)
+.|..+++ .+|+||.+.+|++.++|+++|.+|++|++.+++++++.+++|++..++.+...+..+.++..+. ++.
T Consensus 162 V~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~~~l~~i~l~~~~~---~~~ 238 (679)
T PRK01122 162 VIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTILLAGLTIIFLLVVAT---LPP 238 (679)
T ss_pred eEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHHHHhhhHHHHHHHHH---HHH
Confidence 99986543 4999999999999999999999999999999999999999999987776655544322221111 111
Q ss_pred HHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeee
Q 044020 160 GRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCI 239 (563)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i 239 (563)
+.++.. .. ..+.+++++++++|||+++...++....++++|.++|+++|+.+++|.||++|++
T Consensus 239 ~~~~~g---------------~~--~~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~gvLvk~~~avE~lg~v~~I 301 (679)
T PRK01122 239 FAAYSG---------------GA--LSITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQANVIATSGRAVEAAGDVDTL 301 (679)
T ss_pred HHHHhC---------------ch--HHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcCCeeecCchHHHHhcCCCEE
Confidence 111100 01 1577788999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHHH
Q 044020 240 CTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAIL 319 (563)
Q Consensus 240 ~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~ 319 (563)
|||||||||+|++.+.+++..+.. +++ .++..+..++.. ..||..+|++
T Consensus 302 ~~DKTGTLT~g~~~v~~~~~~~~~----------------~~~--~ll~~a~~~s~~-------------s~hP~~~AIv 350 (679)
T PRK01122 302 LLDKTGTITLGNRQASEFLPVPGV----------------TEE--ELADAAQLSSLA-------------DETPEGRSIV 350 (679)
T ss_pred EEeCCCCCcCCcEEEEEEEeCCCC----------------CHH--HHHHHHHHhcCC-------------CCCchHHHHH
Confidence 999999999999999998653321 111 122222232222 1389999999
Q ss_pred HHHHH-cCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHH
Q 044020 320 EFGLR-LGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNI 398 (563)
Q Consensus 320 ~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i 398 (563)
+++++ .+... .+..++..+.+||++.++++++.+. + ..+.||+++.+++.|.. +|... .+++
T Consensus 351 ~~a~~~~~~~~--~~~~~~~~~~~pF~s~~~~~gv~~~---g--~~~~kGa~e~il~~~~~----~g~~~------~~~~ 413 (679)
T PRK01122 351 VLAKQRFNLRE--RDLQSLHATFVPFSAQTRMSGVDLD---G--REIRKGAVDAIRRYVES----NGGHF------PAEL 413 (679)
T ss_pred HHHHhhcCCCc--hhhccccceeEeecCcCceEEEEEC---C--EEEEECCHHHHHHHHHh----cCCcC------hHHH
Confidence 99876 33322 2223566788999999988887542 2 47889999999999963 12221 1456
Q ss_pred HHHHHHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHH
Q 044020 399 TDVINGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAI 478 (563)
Q Consensus 399 ~~~~~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~ 478 (563)
.+..+.++++|+|++++|+ |++++|+++++|++|++++++|++|+++||+++|+|||++.+|.++
T Consensus 414 ~~~~~~~a~~G~~~l~va~---------------~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aI 478 (679)
T PRK01122 414 DAAVDEVARKGGTPLVVAE---------------DNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAI 478 (679)
T ss_pred HHHHHHHHhCCCcEEEEEE---------------CCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHH
Confidence 6777889999999999983 5689999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 479 AKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 479 a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
|+++|+++ +|++++|++|.++|+.+|++ |+.|+|+|||.||.|||++||||||||
T Consensus 479 A~elGId~------------------------v~A~~~PedK~~iV~~lQ~~-G~~VaMtGDGvNDAPALa~ADVGIAMg 533 (679)
T PRK01122 479 AAEAGVDD------------------------FLAEATPEDKLALIRQEQAE-GRLVAMTGDGTNDAPALAQADVGVAMN 533 (679)
T ss_pred HHHcCCcE------------------------EEccCCHHHHHHHHHHHHHc-CCeEEEECCCcchHHHHHhCCEeEEeC
Confidence 99999986 99999999999999999998 999999999999999999999999999
Q ss_pred CCCCC
Q 044020 559 IAGTE 563 (563)
Q Consensus 559 ~~~~~ 563 (563)
+|+|
T Consensus 534 -sGTd 537 (679)
T PRK01122 534 -SGTQ 537 (679)
T ss_pred -CCCH
Confidence 8875
No 15
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=9.3e-79 Score=692.71 Aligned_cols=538 Identities=23% Similarity=0.341 Sum_probs=429.5
Q ss_pred chhhHHHHHHHHHHHHHHHhccCeeEEEEC-CEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCc----eEEEeccCc
Q 044020 2 VTAISDYKQSLQFRDLDREKKKIFIQVTRD-GQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHS----LLIDESSLS 76 (563)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~V~r~-g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~----l~Vdes~lT 76 (563)
++++.++.+++++++.++..|+..++|+|+ |++++++|++|+|||+|.|++||++|||++|++++. ++||||.||
T Consensus 63 ~~~~~~~~ed~~r~~~d~~~n~~~~~v~~~~~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~ 142 (1057)
T TIGR01652 63 VTAIKEAIEDIRRRRRDKEVNNRLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSSSEPDGVCYVETANLD 142 (1057)
T ss_pred HHHHHHHHHHHHHHHhHHHHhCcEEEEECCCCcEEEeeeecccCCCEEEEcCCCcccceEEEEeccCCCceEEEEeeccC
Confidence 688999999999999999999999999997 899999999999999999999999999999998654 799999999
Q ss_pred CCCCcccccC-----------------------------------------------CCCeEEecceeec-CcEEEEEEE
Q 044020 77 GQSEPRYMYE-----------------------------------------------ENPFLLAGTKVQG-GSGKMLVTT 108 (563)
Q Consensus 77 Ges~p~~k~~-----------------------------------------------~~~~i~~Gt~v~~-g~~~~~V~~ 108 (563)
||+.|+.|.. .++++++||.+.+ |++.++|++
T Consensus 143 GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l~~~N~l~rGs~l~nt~~~~gvVvy 222 (1057)
T TIGR01652 143 GETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYPLSPDNILLRGCTLRNTDWVIGVVVY 222 (1057)
T ss_pred CeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCcccCCHHHhHhcCCEecCCCeEEEEEEE
Confidence 9999998752 1257889999998 999999999
Q ss_pred EcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccch-------hhH
Q 044020 109 VGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSA-------DAL 181 (563)
Q Consensus 109 tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 181 (563)
||.+|.+++ .....+.+++++++.++++..++..+.++++++++++...+. .. .....|+.. ...
T Consensus 223 TG~~Tk~~~---n~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~--~~---~~~~~~yl~~~~~~~~~~~ 294 (1057)
T TIGR01652 223 TGHDTKLMR---NATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWN--DA---HGKDLWYIRLDVSERNAAA 294 (1057)
T ss_pred Echhhhhhh---cCCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhee--cc---cCCCccceecCcccccchh
Confidence 999996655 445557788999999999988877766666665555432111 00 001123221 112
Q ss_pred HHHHHHHHHHHhhhhccCCchHHHHHHHHHHHH------HHHhhC----CCeeecchhhhhcCCeeeeecccccccccCc
Q 044020 182 TLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAM------KKLMND----GALVRHLSACETMGSASCICTDKTRMLTTNH 251 (563)
Q Consensus 182 ~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~------~~l~~~----~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~ 251 (563)
.++..|..++.++..++|.+|++.+.++...+. .+|.++ ++.+|+.+..|+||++++||+|||||||+|+
T Consensus 295 ~~~~~~~~~~~L~~~~IPisL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~E~LG~v~~I~sDKTGTLT~N~ 374 (1057)
T TIGR01652 295 NGFFSFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNEELGQVEYIFSDKTGTLTQNI 374 (1057)
T ss_pred HHHHHHHHHHHHHhhhcceeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCChHHhcCeeEEEEcCCCceeeee
Confidence 344566778888889999999999999998888 777764 5999999999999999999999999999999
Q ss_pred eEEEEEEEcCeeeeecCCCc-------cc-----------c-----------cc----ccccHHHHHHHHHHHHhccCCc
Q 044020 252 MVVDKIWIANTISNVEGNNR-------KD-----------I-----------LQ----SEISERVLDITLQAIFQNTGSK 298 (563)
Q Consensus 252 ~~v~~i~~~~~~~~~~~~~~-------~~-----------~-----------~~----~~~~~~~~~~~~~~~~~~~~~~ 298 (563)
|.++++++++..|....... .. . .. .....+....+..++..||.+.
T Consensus 375 M~~~~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~lC~~v~ 454 (1057)
T TIGR01652 375 MEFKKCSIAGVSYGDGFTEIKDAIRERLGSYVENENSMLVESKGFTFVDPRLVDLLKTNKPNAKRINEFFLALALCHTVV 454 (1057)
T ss_pred EEEEEEEECCEEecCCcchHHHHhhhcccccccccccccccccccccCcHHHHHhhhcCCchhHHHHHHHHHHHhcCccc
Confidence 99999999887765321100 00 0 00 0000112334456677777776
Q ss_pred eeecCCC---CceecCCccHHHHHHHHHHcCCChHH--------------HhhhceEEEEecCCCCceeEEEEEEcCCCe
Q 044020 299 VVKDKDG---KNSILGTPTESAILEFGLRLGGDFEA--------------QRREFKIVKVEPFNSVRKKMSVLIALPAGG 361 (563)
Q Consensus 299 ~~~~~~~---~~~~~~~~~e~al~~~~~~~~~~~~~--------------~~~~~~~~~~~~f~~~~~~~sviv~~~~~~ 361 (563)
+..++++ ..+..++|+|.|++++|+..|+.+.. ....|++++.+||+++|||||++++.++++
T Consensus 455 ~~~~~~~~~~~~y~~~sp~E~ALl~~a~~~g~~~~~~~~~~~~~~i~~~~~~~~~~il~~~pF~s~rKrmSviv~~~~~~ 534 (1057)
T TIGR01652 455 PEFNDDGPEEITYQAASPDEAALVKAARDVGFVFFERTPKSISLLIEMHGETKEYEILNVLEFNSDRKRMSVIVRNPDGR 534 (1057)
T ss_pred ccccCCCCCceEEEccCCcHHHHHHHHHHCCCEEEEecCCceEEEEEeCCCEEEEEEEEecccCCCCCeEEEEEEeCCCe
Confidence 6532222 33567999999999999998876532 224689999999999999999999998888
Q ss_pred EEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCCCC---------------
Q 044020 362 MRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSNE--------------- 426 (563)
Q Consensus 362 ~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~--------------- 426 (563)
+++++||+|+.|+++|+.. +++.++++.+.+++++.+|+|++++|+|.++.++..
T Consensus 535 ~~l~~KGA~e~il~~~~~~----------~~~~~~~~~~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~~~~~~a~~~~~~ 604 (1057)
T TIGR01652 535 IKLLCKGADTVIFKRLSSG----------GNQVNEETKEHLENYASEGLRTLCIAYRELSEEEYEEWNEEYNEASTALTD 604 (1057)
T ss_pred EEEEEeCcHHHHHHHhhcc----------chhHHHHHHHHHHHHHHcCCcEEEEEEEECCHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999741 234567888999999999999999999999765311
Q ss_pred --------CCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC---------
Q 044020 427 --------NNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG--------- 489 (563)
Q Consensus 427 --------~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~--------- 489 (563)
...+|+|++|+|+++++|++|++++++|+.|+++||++||+|||+.++|.++|+++|+.+.+.
T Consensus 605 r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~ 684 (1057)
T TIGR01652 605 REEKLDVVAESIEKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSES 684 (1057)
T ss_pred HHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCc
Confidence 124689999999999999999999999999999999999999999999999999999976432
Q ss_pred --------------------------------ceeechhhhcCCCCC-------C--CcceeEEEecChhhHHHHHHHHH
Q 044020 490 --------------------------------EAVEGPEFRNMSPAD-------I--IPKLQVMARSLPSDKHTLVTQLR 528 (563)
Q Consensus 490 --------------------------------~~~~g~~~~~~~~~~-------~--~~~~~v~~~~~p~~K~~~v~~l~ 528 (563)
.+++|..++.+.+++ + ..+..|+||++|+||.++|+.+|
T Consensus 685 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk 764 (1057)
T TIGR01652 685 LDATRSVEAAIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVK 764 (1057)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHH
Confidence 256777666443321 1 23446999999999999999999
Q ss_pred HhcCCEEEEEcCCccCHHHHhhCCceEee
Q 044020 529 NTFGEVVAVTGDGTNDASALHEADIGLAM 557 (563)
Q Consensus 529 ~~~g~~v~~iGDg~ND~~~l~~a~vgiam 557 (563)
+..|+.|+|+|||.||++||++|||||++
T Consensus 765 ~~~~~~vl~iGDG~ND~~mlk~AdVGIgi 793 (1057)
T TIGR01652 765 KSTGKTTLAIGDGANDVSMIQEADVGVGI 793 (1057)
T ss_pred hcCCCeEEEEeCCCccHHHHhhcCeeeEe
Confidence 86689999999999999999999999975
No 16
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=7.9e-78 Score=638.94 Aligned_cols=443 Identities=23% Similarity=0.348 Sum_probs=353.7
Q ss_pred HHHHHHHHHHHHHHhccCeeE-EEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCccccc
Q 044020 7 DYKQSLQFRDLDREKKKIFIQ-VTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMY 85 (563)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~-V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~k~ 85 (563)
+++.+++...|.+...+.+++ |.|||++++|++++|+|||+|.|++||+|||||+|++|.. .||||+|||||.|+.|.
T Consensus 87 e~ra~~~~~~L~~~~~~~~a~~v~rdg~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~~-~VDESaLTGES~PV~K~ 165 (673)
T PRK14010 87 EGRGKAQANALRQTQTEMKARRIKQDGSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLA-TVDESAITGESAPVIKE 165 (673)
T ss_pred HHHHHHHHHHHHcCCCcceEEEEEeCCEEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcce-EEecchhcCCCCceecc
Confidence 444444455555544443564 7799999999999999999999999999999999999976 99999999999999998
Q ss_pred CC---CCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044020 86 EE---NPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRF 162 (563)
Q Consensus 86 ~~---~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 162 (563)
.+ ++ +|+||.+.+|++.++|+++|.+|++|++.++++.++.+++|++.....+...+ .+.++++++++..+
T Consensus 166 ~g~d~~~-V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~~~l-----~ii~l~~~~~~~~~ 239 (673)
T PRK14010 166 SGGDFDN-VIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLLMTL-----TIIFLVVILTMYPL 239 (673)
T ss_pred CCCccCe-eecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHHHHH-----hHHHHHHHHHHHHH
Confidence 77 56 99999999999999999999999999999999998989999986554432221 11111121111111
Q ss_pred hhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeeeecc
Q 044020 163 LGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCICTD 242 (563)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i~~D 242 (563)
.. + ..+...+.+.++++++++||+|+..++++...++++|+++|+++|+.+++|.||++|++|||
T Consensus 240 ~~----------~-----~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~gvLvk~~~avE~lg~v~vI~~D 304 (673)
T PRK14010 240 AK----------F-----LNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILAKSGRSVETCGDVNVLILD 304 (673)
T ss_pred Hh----------h-----ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCEEEeCcHHHHHhhCCCEEEEe
Confidence 00 0 01223456677777888999999999999999999999999999999999999999999999
Q ss_pred cccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHHHHHH
Q 044020 243 KTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFG 322 (563)
Q Consensus 243 KTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~ 322 (563)
||||||+|++.+.++...+.. + ..+++..+..++.. +.||++.|+++++
T Consensus 305 KTGTLT~Gn~~~~~~~~~~~~----------------~--~~~ll~~a~~~~~~-------------s~~P~~~AIv~~a 353 (673)
T PRK14010 305 KTGTITYGNRMADAFIPVKSS----------------S--FERLVKAAYESSIA-------------DDTPEGRSIVKLA 353 (673)
T ss_pred CCCcCCCCCeEEEEEEeCCCc----------------c--HHHHHHHHHHhcCC-------------CCChHHHHHHHHH
Confidence 999999998888775432210 1 11222233333322 1399999999999
Q ss_pred HHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHH
Q 044020 323 LRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVI 402 (563)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~ 402 (563)
++.+.+.... ....+||++++|+|++.+. +. .+.||+++.+++.|+. +|...+. .+.+..
T Consensus 354 ~~~~~~~~~~-----~~~~~pF~~~~k~~gv~~~---g~--~i~kGa~~~il~~~~~----~g~~~~~------~~~~~~ 413 (673)
T PRK14010 354 YKQHIDLPQE-----VGEYIPFTAETRMSGVKFT---TR--EVYKGAPNSMVKRVKE----AGGHIPV------DLDALV 413 (673)
T ss_pred HHcCCCchhh-----hcceeccccccceeEEEEC---CE--EEEECCHHHHHHHhhh----cCCCCch------HHHHHH
Confidence 8776553221 1234899999999998753 22 4559999999999974 1222221 245566
Q ss_pred HHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHc
Q 044020 403 NGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKEC 482 (563)
Q Consensus 403 ~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~l 482 (563)
+.++++|+|+++++ .|++++|+++++|++|++++++|++||++||+++|+|||++.+|.++|+++
T Consensus 414 ~~~a~~G~~~l~v~---------------~~~~~lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~el 478 (673)
T PRK14010 414 KGVSKKGGTPLVVL---------------EDNEILGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEA 478 (673)
T ss_pred HHHHhCCCeEEEEE---------------ECCEEEEEEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc
Confidence 77889999998765 356999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCCC
Q 044020 483 GILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAGT 562 (563)
Q Consensus 483 gi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~ 562 (563)
|++. +|++++|++|.++|+.+|++ |+.|+|+|||.||.|+|++|||||||| +|+
T Consensus 479 GI~~------------------------v~A~~~PedK~~iV~~lQ~~-G~~VaMtGDGvNDAPALa~ADVGIAMg-sGT 532 (673)
T PRK14010 479 GVDR------------------------FVAECKPEDKINVIREEQAK-GHIVAMTGDGTNDAPALAEANVGLAMN-SGT 532 (673)
T ss_pred CCce------------------------EEcCCCHHHHHHHHHHHHhC-CCEEEEECCChhhHHHHHhCCEEEEeC-CCC
Confidence 9986 99999999999999999998 999999999999999999999999999 887
Q ss_pred C
Q 044020 563 E 563 (563)
Q Consensus 563 ~ 563 (563)
|
T Consensus 533 d 533 (673)
T PRK14010 533 M 533 (673)
T ss_pred H
Confidence 5
No 17
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-79 Score=624.60 Aligned_cols=541 Identities=31% Similarity=0.444 Sum_probs=464.6
Q ss_pred hhhHHHHHHHHHHHHHHH---hccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCC
Q 044020 3 TAISDYKQSLQFRDLDRE---KKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQS 79 (563)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~---~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes 79 (563)
+.+..|.++.+..+..+. ..++.++|+|||....+.+++||+||+|.++.|+++|||.+++++..++||+|++||||
T Consensus 139 tg~~~~~qe~ks~~im~sF~~l~P~~~~ViRdg~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGes 218 (1019)
T KOG0203|consen 139 TGLFSYYQEAKSSKIMDSFKNLVPQQALVIRDGEKMTINAEELVVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGES 218 (1019)
T ss_pred EecCCCccchhhHHHHHHHhccchhhheeeecceeEEechhhcccccceeeccCCcccceeEEEEecceeEecccccccc
Confidence 334445555555554444 34668999999999999999999999999999999999999999999999999999999
Q ss_pred Cccccc---------CCCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 044020 80 EPRYMY---------EENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFF 150 (563)
Q Consensus 80 ~p~~k~---------~~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (563)
+|..+. +..|+-|.+|.+++|.++++|++||.+|.+|++..+.......++|++..++++..++...++++
T Consensus 219 EP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~~~~ei~~fi~~it~vAi~~ 298 (1019)
T KOG0203|consen 219 EPQTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATGDRTVMGRIASLASGLEDGKTPIAKEIEHFIHIITGVAIFL 298 (1019)
T ss_pred CCccCCccccccCchhheeeeeeeeEEecceEEEEEEecCCceEEeehhhhhccCCCCCCcchhhhhchHHHHHHHHHHH
Confidence 998876 34567899999999999999999999999999998887778889999999999999999888888
Q ss_pred HHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhh
Q 044020 151 SVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSAC 230 (563)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~l 230 (563)
++..|++..... ..+..++.+.++++++.+|.+|+..++.++....++|+++++++||.++.
T Consensus 299 ~i~fF~~~~~~g------------------y~~l~avv~~i~iivAnvPeGL~~tvTv~LtltakrMa~Knc~vknLeav 360 (1019)
T KOG0203|consen 299 GISFFILALILG------------------YEWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAV 360 (1019)
T ss_pred HHHHHHHHHhhc------------------chhHHHhhhhheeEEecCcCCccceehhhHHHHHHHHhhceeEEeeeehe
Confidence 887776654321 14566777789999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCC----C
Q 044020 231 ETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDG----K 306 (563)
Q Consensus 231 e~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 306 (563)
|.||..+++|.|||||||+|.|.|.++|.++.....+.............+.....+..+...|+.+.+...+.+ .
T Consensus 361 etlGsts~I~SDktGTlTqnrMtVahlw~d~~i~~~d~~~~~~~~~~~~~~~~~~~l~r~~~lCn~a~~~~gq~dvPv~k 440 (1019)
T KOG0203|consen 361 ETLGSTSTICSDKTGTLTQNRMTVAHLWFDNQIHEADTTEDQSGQSFDKSSATFIALSRIATLCNRAVFKPGQDDVPVLK 440 (1019)
T ss_pred eecccceeEeecceeeEEecceEEEeeccCCceeeeechhhhhcccccccCchHHHHHHHHHHhCcceecccccCCceee
Confidence 999999999999999999999999999999887655543222222222234455556666677777666544433 2
Q ss_pred ceecCCccHHHHHHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCC---CeEEEEEeCChhHHHhcccccccC
Q 044020 307 NSILGTPTESAILEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPA---GGMRAFCKGASEIVLSMCDKVVSD 383 (563)
Q Consensus 307 ~~~~~~~~e~al~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~---~~~~~~~kG~~~~il~~c~~~~~~ 383 (563)
....|++.|.||++++...-.+....++.++.+..+||+|.+|++-.+...++ ..+.+.+||+||.++++|+.++.
T Consensus 441 k~v~G~~se~ALlk~~e~~~~~~~~~R~~~~kv~eipfNSt~Kyqlsih~~~d~~~~~~~l~mKGape~il~~CSTi~i- 519 (1019)
T KOG0203|consen 441 RDVAGDASEVALLKFIELILGSVMELRERNPKVAEIPFNSTNKYQLSIHETEDPSDPRFLLVMKGAPERILDRCSTILI- 519 (1019)
T ss_pred eeccCCHHHHHHHHHHHHhcchHHHHHHhhHHhhcCCcccccceEEEEEecCCCCCccceeeecCChHHHHhhccceee-
Confidence 36779999999999999888888899999999999999999999988887755 56788999999999999999876
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCCC---------CCCCCCCCceEEEEecccCCCCcchHHHH
Q 044020 384 NGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSN---------ENNIPDSGYTLIAVVGIKDPVRPGVKEAV 454 (563)
Q Consensus 384 ~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~---------~~~~~~~~~~~lG~i~~~d~~~~~~~~~I 454 (563)
+|+..|++++.++.++..+..++..|.||++||++.++.... ..++.-.++.|+|++++-||+|..+.+|+
T Consensus 520 ~g~e~pld~~~~~~f~~ay~~lg~~GerVlgF~~~~l~~~~~p~~~~f~~d~~n~p~~nl~FlGl~s~idPPR~~vP~Av 599 (1019)
T KOG0203|consen 520 NGEEKPLDEKLKEAFQEAYLELGGLGERVLGFCDLELPDEKFPRGFQFDTDDVNFPTDNLRFLGLISMIDPPRAAVPDAV 599 (1019)
T ss_pred cCCCCCcCHHHHHHHHHHHHHhhhcchHHHHHHHHhcchhcCCCceEeecCCCCCcchhccccchhhccCCCcccCchhh
Confidence 489999999999999999999999999999999999997642 33577789999999999999999999999
Q ss_pred HHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC------------------------CCceeechhhhcCCCC---CC--
Q 044020 455 QTCLEAGITVRMVTGDNINTARAIAKECGILTS------------------------DGEAVEGPEFRNMSPA---DI-- 505 (563)
Q Consensus 455 ~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~------------------------~~~~~~g~~~~~~~~~---~~-- 505 (563)
.+|+.+||+|+|+|||++.+|+++|+..||... ...+++|.++.++..+ ++
T Consensus 600 ~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~~~~~qld~il~ 679 (1019)
T KOG0203|consen 600 GKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPDMSSEQLDELLQ 679 (1019)
T ss_pred hhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccccccCHHHHHHHHH
Confidence 999999999999999999999999999997652 2357888888888766 22
Q ss_pred CcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCCCC
Q 044020 506 IPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 506 ~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~~ 563 (563)
.....||||.+|+||.-+|+.+|+. |..|+++|||.||.||||.||+|||||+.|+|
T Consensus 680 nh~eIVFARTSPqQKLiIVe~cQr~-GaiVaVTGDGVNDsPALKKADIGVAMGiaGSD 736 (1019)
T KOG0203|consen 680 NHQEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGVNDSPALKKADIGVAMGIAGSD 736 (1019)
T ss_pred hCCceEEEecCccceEEeEhhhhhc-CcEEEEeCCCcCCChhhcccccceeeccccch
Confidence 2333599999999999999999998 99999999999999999999999999999875
No 18
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=6.2e-76 Score=662.40 Aligned_cols=548 Identities=22% Similarity=0.298 Sum_probs=421.1
Q ss_pred CchhhHHHHHHHHHHHHHHHhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCc----eEEEeccCc
Q 044020 1 MVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHS----LLIDESSLS 76 (563)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~----l~Vdes~lT 76 (563)
++++++++.+++++++.++..|+..++|+|+|.+++++|++|+|||+|+|++||.+|||+++++++. ++||||+||
T Consensus 148 ~v~~ike~~Ed~~r~k~d~~~N~~~~~v~~~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~~Vdts~Ld 227 (1178)
T PLN03190 148 LVTAVKDAYEDWRRHRSDRIENNRLAWVLVDDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINLD 227 (1178)
T ss_pred HHHHHHHHHHHHHHHHhHHhhcCcEEEEEECCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCceEEEEccccC
Confidence 3678999999999999999999999999999999999999999999999999999999999998433 699999999
Q ss_pred CCCCcccccC--------------------------------------------CCCeEEecceeec-CcEEEEEEEEcc
Q 044020 77 GQSEPRYMYE--------------------------------------------ENPFLLAGTKVQG-GSGKMLVTTVGM 111 (563)
Q Consensus 77 Ges~p~~k~~--------------------------------------------~~~~i~~Gt~v~~-g~~~~~V~~tg~ 111 (563)
||+.|+.|.. .++++++|+.+.+ .++.++|++||.
T Consensus 228 GEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG~ 307 (1178)
T PLN03190 228 GESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCGR 307 (1178)
T ss_pred CeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEech
Confidence 9999988751 1345667777775 379999999999
Q ss_pred cchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccch-------------
Q 044020 112 RTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSA------------- 178 (563)
Q Consensus 112 ~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 178 (563)
+|. ++.+....+.+.+++++.++++..++..+.+++++++.++...+.. ......++..|+..
T Consensus 308 dTK---~~~N~~~~~~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~~~~-~~~~~~~yl~~~~~~~~~~~~~~~~~~ 383 (1178)
T PLN03190 308 ETK---AMLNNSGAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLR-RHRDELDTIPFYRRKDFSEGGPKNYNY 383 (1178)
T ss_pred hhh---HhhcCCCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccccccccccccccc
Confidence 994 5555556678899999999999888777766666655554322111 00000111122210
Q ss_pred hh--HHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCC----------CeeecchhhhhcCCeeeeecccccc
Q 044020 179 DA--LTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDG----------ALVRHLSACETMGSASCICTDKTRM 246 (563)
Q Consensus 179 ~~--~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~----------i~~k~~~~le~l~~v~~i~~DKTGT 246 (563)
.. ...+..|...+.++...+|.+|++.+.+........+.+.. +.+|+.+..|+||+|++||+|||||
T Consensus 384 ~~~~~~~~~~f~~~lil~~~~IPISL~Vtleivk~~qa~~I~~D~~m~~~~~~~~~~vr~snl~EeLGqV~yIfSDKTGT 463 (1178)
T PLN03190 384 YGWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGT 463 (1178)
T ss_pred chhhHHHHHHHHHHHHHHHhhcceeeeeeHHHHHHHHHHHHHhhhhcccccCCCcceeccCcchhhhccceEEEEcCCCc
Confidence 00 11122333445566688999999999999866555554332 7799999999999999999999999
Q ss_pred cccCceEEEEEEEcCeeeeecCCC-------------cc-----ccc--c--------cc---ccHHHHHHHHHHHHhcc
Q 044020 247 LTTNHMVVDKIWIANTISNVEGNN-------------RK-----DIL--Q--------SE---ISERVLDITLQAIFQNT 295 (563)
Q Consensus 247 LT~~~~~v~~i~~~~~~~~~~~~~-------------~~-----~~~--~--------~~---~~~~~~~~~~~~~~~~~ 295 (563)
||+|.|.++++++.+..|+..... .. ... . .. ........+..++..||
T Consensus 464 LT~N~M~fk~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~lalCh 543 (1178)
T PLN03190 464 LTENKMEFQCASIWGVDYSDGRTPTQNDHAGYSVEVDGKILRPKMKVKVDPQLLELSKSGKDTEEAKHVHDFFLALAACN 543 (1178)
T ss_pred cccceEEEEEEEECCEEcccccccchhhhhccccccccccccccccccCCHHHHhhhhccccchhhHHHHHHHHHHHhcC
Confidence 999999999999987766421100 00 000 0 00 00112234556777788
Q ss_pred CCceeecCC--C-----CceecCCccHHHHHHHHHHcCC------------ChHHHhhhceEEEEecCCCCceeEEEEEE
Q 044020 296 GSKVVKDKD--G-----KNSILGTPTESAILEFGLRLGG------------DFEAQRREFKIVKVEPFNSVRKKMSVLIA 356 (563)
Q Consensus 296 ~~~~~~~~~--~-----~~~~~~~~~e~al~~~~~~~~~------------~~~~~~~~~~~~~~~~f~~~~~~~sviv~ 356 (563)
++.+...++ + ..+...+|+|.||+++|...|+ +..+.+..|+++..+||+++||||||+++
T Consensus 544 tv~~~~~~~~~~~~~~~~~Y~a~SPdE~ALv~~a~~~G~~l~~r~~~~i~i~~~~~~~~~~il~~~pF~S~rKrMSvIv~ 623 (1178)
T PLN03190 544 TIVPIVVDDTSDPTVKLMDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGERQRFNVLGLHEFDSDRKRMSVILG 623 (1178)
T ss_pred CceeeccCCCCCccccceEEecCCCcHHHHHHHHHHCCCeEecccCCeEEEeeccceecceeEEEecccccccEEEEEEE
Confidence 876642211 1 2366679999999999999997 44556678999999999999999999999
Q ss_pred cCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCCCC----------
Q 044020 357 LPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSNE---------- 426 (563)
Q Consensus 357 ~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~---------- 426 (563)
.+++.+++++||+|+.|+++|+... +++.++++.+.+++|+++|+||+++|||.++.++..
T Consensus 624 ~~~~~~~l~~KGA~e~il~~~~~~~---------~~~~~~~~~~~l~~~a~~GlRtL~lA~k~l~~~e~~~~~~~~~~a~ 694 (1178)
T PLN03190 624 CPDKTVKVFVKGADTSMFSVIDRSL---------NMNVIRATEAHLHTYSSLGLRTLVVGMRELNDSEFEQWHFSFEAAS 694 (1178)
T ss_pred cCCCcEEEEEecCcHHHHHhhcccc---------cchhHHHHHHHHHHHHhcCCceEEEEEEeCCHHHHhhHHHHHHHhh
Confidence 8888899999999999999997532 234567788999999999999999999999764321
Q ss_pred -------------CCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC----
Q 044020 427 -------------NNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG---- 489 (563)
Q Consensus 427 -------------~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~---- 489 (563)
...+|.|++++|+++++|++|++++++|+.|+++|++++|+|||+..+|.++|+.+||.+.+.
T Consensus 695 ~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~Ll~~~~~~i~ 774 (1178)
T PLN03190 695 TALIGRAALLRKVASNVENNLTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQII 774 (1178)
T ss_pred hhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCCCCCCeeEE
Confidence 135689999999999999999999999999999999999999999999999999999865431
Q ss_pred ---------------------------------------------ceeechhhhcCCCC-------C--CCcceeEEEec
Q 044020 490 ---------------------------------------------EAVEGPEFRNMSPA-------D--IIPKLQVMARS 515 (563)
Q Consensus 490 ---------------------------------------------~~~~g~~~~~~~~~-------~--~~~~~~v~~~~ 515 (563)
.+++|..+..+... + ...+..++||+
T Consensus 775 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVIdG~~L~~~l~~~~~~~f~~l~~~~~~VI~cR~ 854 (1178)
T PLN03190 775 INSNSKESCRKSLEDALVMSKKLTTVSGISQNTGGSSAAASDPVALIIDGTSLVYVLDSELEEQLFQLASKCSVVLCCRV 854 (1178)
T ss_pred ecCCchhhHHHHHHHHhhhhhhccccccccccccccccccCCceEEEEEcHHHHHHhhhHHHHHHHHHHHhCCEEEEecC
Confidence 34555555444321 1 12344589999
Q ss_pred ChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCCCC
Q 044020 516 LPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 516 ~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~~ 563 (563)
+|.||.++|+.+|+..++.|+|+|||.||++||++||||| |+.|+|
T Consensus 855 sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv~mIq~AdVGI--GIsG~E 900 (1178)
T PLN03190 855 APLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGV--GISGQE 900 (1178)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEECCCcchHHHHHhcCeee--eecCch
Confidence 9999999999999874689999999999999999999999 556654
No 19
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=3.9e-75 Score=617.34 Aligned_cols=453 Identities=25% Similarity=0.323 Sum_probs=367.3
Q ss_pred chhhHHHHHHHHHHHHHHHhccCeeEEEE-CCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCC
Q 044020 2 VTAISDYKQSLQFRDLDREKKKIFIQVTR-DGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSE 80 (563)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~V~r-~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~ 80 (563)
+++..+++.+++.++|.+..++..++|+| ||+++.|++++|+|||+|.|++||+|||||+|++|.. .||||+|||||.
T Consensus 83 ~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~dg~~~~V~~~~L~~GDiV~V~~Gd~IPaDG~vieG~~-~VDESaLTGES~ 161 (675)
T TIGR01497 83 AEAVAEGRGKAQADSLKGTKKTTFAKLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEGVA-SVDESAITGESA 161 (675)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEeeCCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEccE-EEEcccccCCCC
Confidence 45567777777777777765555688885 8999999999999999999999999999999999965 999999999999
Q ss_pred cccccCCCC--eEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044020 81 PRYMYEENP--FLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVL 158 (563)
Q Consensus 81 p~~k~~~~~--~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (563)
|+.|..+++ .+|+||.+.+|++.++|+++|.+|++|++.++++.++.+++|++..++.+..++..+. .++.+.++
T Consensus 162 PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~~l~~l~~~l~~v~---li~~~~~~ 238 (675)
T TIGR01497 162 PVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEIALTILLIALTLVF---LLVTATLW 238 (675)
T ss_pred ceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 999987764 3999999999999999999999999999999999998889999987776654433221 11122222
Q ss_pred HHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeee
Q 044020 159 IGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASC 238 (563)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~ 238 (563)
.+..+. .....+...+++++++|||+|+...+.....+++++.++|+++|+.+++|.||++|+
T Consensus 239 ~~~~~~-----------------~~~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~ar~gvLvK~~~avE~lg~v~~ 301 (675)
T TIGR01497 239 PFAAYG-----------------GNAISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVLGFNVIATSGRAVEACGDVDT 301 (675)
T ss_pred HHHHhc-----------------ChhHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHCCeEeeCcHHHHHhhCCCE
Confidence 111110 001246667889999999999888888777899999999999999999999999999
Q ss_pred eecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHH
Q 044020 239 ICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAI 318 (563)
Q Consensus 239 i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al 318 (563)
+|||||||||+|+|.+.+++..+.. ..++ ++..+..++.. ..||.++|+
T Consensus 302 I~~DKTGTLT~g~~~v~~~~~~~~~---------------~~~~---ll~~aa~~~~~-------------s~hP~a~Ai 350 (675)
T TIGR01497 302 LLLDKTGTITLGNRLASEFIPAQGV---------------DEKT---LADAAQLASLA-------------DDTPEGKSI 350 (675)
T ss_pred EEECCCCcccCCCeEEEEEEecCCC---------------cHHH---HHHHHHHhcCC-------------CCCcHHHHH
Confidence 9999999999999999998753221 0112 22222222221 148999999
Q ss_pred HHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHH
Q 044020 319 LEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNI 398 (563)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i 398 (563)
++++++.+.+... ..++..+..||++.++++++.+. ++ ..+.||+++.+++.|.. +|...+ ..+
T Consensus 351 v~~a~~~~~~~~~--~~~~~~~~~pf~~~~~~sg~~~~--~g--~~~~kGa~e~i~~~~~~----~g~~~~------~~~ 414 (675)
T TIGR01497 351 VILAKQLGIREDD--VQSLHATFVEFTAQTRMSGINLD--NG--RMIRKGAVDAIKRHVEA----NGGHIP------TDL 414 (675)
T ss_pred HHHHHHcCCCccc--cccccceEEEEcCCCcEEEEEEe--CC--eEEEECCHHHHHHHHHh----cCCCCc------HHH
Confidence 9999887654322 22345678999999887776543 22 46889999999988852 122211 346
Q ss_pred HHHHHHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHH
Q 044020 399 TDVINGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAI 478 (563)
Q Consensus 399 ~~~~~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~ 478 (563)
.+.++.++++|.|++++|+ +.+++|+++++|++||+++++|++|+++|++++|+|||+..++.++
T Consensus 415 ~~~~~~~a~~G~r~l~va~---------------~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~i 479 (675)
T TIGR01497 415 DQAVDQVARQGGTPLVVCE---------------DNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAI 479 (675)
T ss_pred HHHHHHHHhCCCeEEEEEE---------------CCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 6777889999999999995 3489999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 479 AKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 479 a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
|+++|+++ ++++++|++|..+++.+|++ |+.|+|+|||.||.|||++||+|||||
T Consensus 480 A~~lGI~~------------------------v~a~~~PedK~~~v~~lq~~-g~~VamvGDG~NDapAL~~AdvGiAm~ 534 (675)
T TIGR01497 480 AAEAGVDD------------------------FIAEATPEDKIALIRQEQAE-GKLVAMTGDGTNDAPALAQADVGVAMN 534 (675)
T ss_pred HHHcCCCE------------------------EEcCCCHHHHHHHHHHHHHc-CCeEEEECCCcchHHHHHhCCEeEEeC
Confidence 99999986 99999999999999999998 999999999999999999999999999
Q ss_pred CCCCC
Q 044020 559 IAGTE 563 (563)
Q Consensus 559 ~~~~~ 563 (563)
+|++
T Consensus 535 -~gt~ 538 (675)
T TIGR01497 535 -SGTQ 538 (675)
T ss_pred -CCCH
Confidence 8763
No 20
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-74 Score=613.64 Aligned_cols=438 Identities=29% Similarity=0.367 Sum_probs=357.0
Q ss_pred hhHHHHHHHHHHHHHH----H--hccCeeEEEE-CCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCc
Q 044020 4 AISDYKQSLQFRDLDR----E--KKKIFIQVTR-DGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLS 76 (563)
Q Consensus 4 ~~~~~~~~~~~~~l~~----~--~~~~~~~V~r-~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lT 76 (563)
.+.+|.+.+.+.+..+ . +.+.++++.+ ||++++||+++|++||+|.|+|||+||+||+|++|++ .||||+||
T Consensus 185 ~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s-~vDeS~iT 263 (713)
T COG2217 185 LLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSS-SVDESMLT 263 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcE-Eeecchhh
Confidence 3455555555554333 2 3466786766 5658999999999999999999999999999999998 99999999
Q ss_pred CCCCcccccCCCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044020 77 GQSEPRYMYEENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFL 156 (563)
Q Consensus 77 Ges~p~~k~~~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (563)
|||.|+.|.+++. |++||.+.+|.+.++|+++|.+|++++|.+++++++.+++|+|+..|+++.+|.|.++++++++|+
T Consensus 264 GEs~PV~k~~Gd~-V~aGtiN~~G~l~i~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~ 342 (713)
T COG2217 264 GESLPVEKKPGDE-VFAGTVNLDGSLTIRVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFA 342 (713)
T ss_pred CCCCCEecCCCCE-EeeeEEECCccEEEEEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 9999999998887 999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCe
Q 044020 157 VLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSA 236 (563)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v 236 (563)
+|.+..- .++...|..++++|+++|||+|.+++|+++..++.+++++|+++|+.+++|.++++
T Consensus 343 ~w~~~~~-----------------~~~~~a~~~a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v 405 (713)
T COG2217 343 LWPLFGG-----------------GDWETALYRALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKV 405 (713)
T ss_pred HHHHhcC-----------------CcHHHHHHHHHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccC
Confidence 6643321 13455789999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHH
Q 044020 237 SCICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTES 316 (563)
Q Consensus 237 ~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 316 (563)
|+++||||||||+|+|+|.++...+.. .++++.+ +..... .+.||..+
T Consensus 406 ~tvvFDKTGTLT~G~p~v~~v~~~~~~----------------e~~~L~l---aAalE~-------------~S~HPiA~ 453 (713)
T COG2217 406 DTVVFDKTGTLTEGKPEVTDVVALDGD----------------EDELLAL---AAALEQ-------------HSEHPLAK 453 (713)
T ss_pred CEEEEeCCCCCcCCceEEEEEecCCCC----------------HHHHHHH---HHHHHh-------------cCCChHHH
Confidence 999999999999999999998765430 1223332 222222 23499999
Q ss_pred HHHHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHH
Q 044020 317 AILEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFR 396 (563)
Q Consensus 317 al~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~ 396 (563)
|+++++...+.... +..+.+| .+ .+.-+.++ ..+.-|++..+.+. +.. .+.
T Consensus 454 AIv~~a~~~~~~~~------~~~~~i~---G~---Gv~~~v~g---~~v~vG~~~~~~~~--------~~~--~~~---- 504 (713)
T COG2217 454 AIVKAAAERGLPDV------EDFEEIP---GR---GVEAEVDG---ERVLVGNARLLGEE--------GID--LPL---- 504 (713)
T ss_pred HHHHHHHhcCCCCc------cceeeec---cC---cEEEEECC---EEEEEcCHHHHhhc--------CCC--ccc----
Confidence 99998887652110 0111111 11 11111111 23334666655321 111 111
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHH
Q 044020 397 NITDVINGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTAR 476 (563)
Q Consensus 397 ~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~ 476 (563)
..+....+.++|..++.++ .|.+++|+|.+.|++|++++++|++||+.|++++|+|||+..+|+
T Consensus 505 -~~~~~~~~~~~G~t~v~va---------------~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~ 568 (713)
T COG2217 505 -LSERIEALESEGKTVVFVA---------------VDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAE 568 (713)
T ss_pred -hhhhHHHHHhcCCeEEEEE---------------ECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHH
Confidence 3455667777888777666 455999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEe
Q 044020 477 AIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556 (563)
Q Consensus 477 ~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgia 556 (563)
.+|+++||+. +++++.|++|.+.|+.||++ |+.|+|+|||.||.|+|.+||||||
T Consensus 569 ~iA~~lGId~------------------------v~AellPedK~~~V~~l~~~-g~~VamVGDGINDAPALA~AdVGiA 623 (713)
T COG2217 569 AIAKELGIDE------------------------VRAELLPEDKAEIVRELQAE-GRKVAMVGDGINDAPALAAADVGIA 623 (713)
T ss_pred HHHHHcChHh------------------------heccCCcHHHHHHHHHHHhc-CCEEEEEeCCchhHHHHhhcCeeEe
Confidence 9999999987 99999999999999999998 9999999999999999999999999
Q ss_pred ecCCCCC
Q 044020 557 MGIAGTE 563 (563)
Q Consensus 557 mg~~~~~ 563 (563)
|| .|+|
T Consensus 624 mG-~GtD 629 (713)
T COG2217 624 MG-SGTD 629 (713)
T ss_pred ec-CCcH
Confidence 99 7875
No 21
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-73 Score=591.82 Aligned_cols=515 Identities=25% Similarity=0.364 Sum_probs=388.4
Q ss_pred HHHHHHHHHHHHHHhc-cCeeEEEECCEEEEeecCCcccCcEEEeCC-CCeeeceEEEEeeCceEEEeccCcCCCCcccc
Q 044020 7 DYKQSLQFRDLDREKK-KIFIQVTRDGQRQKVCTYDLVVGDIVHLSI-GDQVPAYGIFISGHSLLIDESSLSGQSEPRYM 84 (563)
Q Consensus 7 ~~~~~~~~~~l~~~~~-~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~-G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~k 84 (563)
-|...++...+.+... ...|+|+|||.|+.|.++|||||||+.+.+ |-..|||+++++|++ .||||+|||||.|+.|
T Consensus 232 v~e~r~qs~rlr~mv~~~~~V~V~R~g~~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g~c-ivNEsmLTGESVPv~K 310 (1140)
T KOG0208|consen 232 VYETRKQSIRLRSMVKFTCPVTVIRDGFWETVDSSELVPGDILYIPPPGKIMPCDALLISGDC-IVNESMLTGESVPVTK 310 (1140)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEECCEEEEEeccccccccEEEECCCCeEeecceEEEeCcE-EeecccccCCcccccc
Confidence 3444444445555443 347999999999999999999999999999 999999999999976 8999999999999999
Q ss_pred cC------------------CCCeEEecceee------cCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHH
Q 044020 85 YE------------------ENPFLLAGTKVQ------GGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVA 140 (563)
Q Consensus 85 ~~------------------~~~~i~~Gt~v~------~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~ 140 (563)
.+ ..+.+|+||+++ ++++.++|++||.+|..|++.+++...+ +.+++-..|.+.
T Consensus 311 ~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g~~v~a~V~RTGF~T~KGqLVRsilyPk--P~~fkfyrds~~ 388 (1140)
T KOG0208|consen 311 TPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLGGPVLAMVLRTGFSTTKGQLVRSILYPK--PVNFKFYRDSFK 388 (1140)
T ss_pred cCCccccccCcCeeechhhcCcceeeccceEEEeecCCCCceEEEEEeccccccccHHHHhhcCCC--CcccHHHHHHHH
Confidence 62 345799999998 4789999999999999999999998854 344443333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhC
Q 044020 141 TIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMND 220 (563)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~ 220 (563)
++....+++++.|+..+..+... ...+...++.++.++.+.+|+|||.+.++...++.+||.|+
T Consensus 389 --fi~~l~~ia~~gfiy~~i~l~~~--------------g~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk 452 (1140)
T KOG0208|consen 389 --FILFLVIIALIGFIYTAIVLNLL--------------GVPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKK 452 (1140)
T ss_pred --HHHHHHHHHHHHHHHHhHhHHHc--------------CCCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhc
Confidence 22222223333333322222111 12455668889999999999999999999999999999999
Q ss_pred CCeeecchhhhhcCCeeeeecccccccccCceEEEEEEEcCeeeeecC---CCcccc------ccccccHHHHHHHHHHH
Q 044020 221 GALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEG---NNRKDI------LQSEISERVLDITLQAI 291 (563)
Q Consensus 221 ~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~ 291 (563)
||++-+|..+...|++|++|||||||||++.+.+..+........... ...... +....+......+..++
T Consensus 453 ~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~ 532 (1140)
T KOG0208|consen 453 GIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWGVVPVERNVDDGPELKVVTEDSLQLFYKLSLRSSSLPMGNLVAAM 532 (1140)
T ss_pred CeEEcCccceeecceeeEEEEcCCCcccccceeEEEEEeccccccccchhhhhhhhhccceeeccccccCCchHHHHHHH
Confidence 999999999999999999999999999999999988776432210000 000000 00000111234556666
Q ss_pred HhccCCceeecCCCCceecCCccHHHHHHHHHHcCC----Ch---------------------HHHh----hhceEEEEe
Q 044020 292 FQNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGG----DF---------------------EAQR----REFKIVKVE 342 (563)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~----~~---------------------~~~~----~~~~~~~~~ 342 (563)
..||+...+. ....|+|.|..+.+.....-. +. +... ..+.+++.+
T Consensus 533 atCHSL~~v~-----g~l~GDPLdlkmfe~t~w~~ee~~~~~~~~~~~~~~~p~v~~p~~~~~~~~t~~~~~~~si~k~f 607 (1140)
T KOG0208|consen 533 ATCHSLTLVD-----GTLVGDPLDLKMFESTGWVYEEADIEDEATREFNTLIPTVVRPPENAFNQSTECGEGEISIVKQF 607 (1140)
T ss_pred hhhceeEEeC-----CeeccCceeeeeeeccceEEEeccccchhhhhhCCccCCEeCCCcccccCCCcCCCcceEEEEec
Confidence 7777554432 245677777665553221100 00 0001 158899999
Q ss_pred cCCCCceeEEEEEEcCC-CeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccC
Q 044020 343 PFNSVRKKMSVLIALPA-GGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLN 421 (563)
Q Consensus 343 ~f~~~~~~~sviv~~~~-~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~ 421 (563)
||+|.-+||||++..++ ..+.+|+||+||.|.+.|.. +.+ ...+++.++.|+.+|+|++|+|+|+++
T Consensus 608 eF~S~LrRMSVIv~~~~e~~~~~ftKGaPE~I~~ic~p------~tv------P~dy~evl~~Yt~~GfRVIAlA~K~L~ 675 (1140)
T KOG0208|consen 608 EFSSALRRMSVIVSTGGEDKMMVFTKGAPESIAEICKP------ETV------PADYQEVLKEYTHQGFRVIALASKELE 675 (1140)
T ss_pred ccchhhheEEEEEecCCCCceEeeccCCHHHHHHhcCc------ccC------CccHHHHHHHHHhCCeEEEEEecCccC
Confidence 99999999999999864 67899999999999999974 222 356788999999999999999999999
Q ss_pred CCC------CCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCcee---
Q 044020 422 DSS------NENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAV--- 492 (563)
Q Consensus 422 ~~~------~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~--- 492 (563)
... -.+..+|.|++|+|+|.|++++++.++..|++|.+++|+++|+|||+..+|..+||+||+..+...++
T Consensus 676 ~~~~~~~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi~p~~~v~~~~ 755 (1140)
T KOG0208|consen 676 TSTLQKAQKLSRDTVESNLEFLGLIVMENKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMIEPQVKVIIPE 755 (1140)
T ss_pred cchHHHHhhccHhhhhccceeeEEEEeecccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccccCCCCeEEEEe
Confidence 873 24468899999999999999999999999999999999999999999999999999999987532211
Q ss_pred ----------------------------------------------------echhhhcCCCC------CCCcceeEEEe
Q 044020 493 ----------------------------------------------------EGPEFRNMSPA------DIIPKLQVMAR 514 (563)
Q Consensus 493 ----------------------------------------------------~g~~~~~~~~~------~~~~~~~v~~~ 514 (563)
+|+.+.-+... .++.+-.||||
T Consensus 756 ~~~~~~~~~~~i~w~~ve~~~~~~~~~~~~~~~~~~~~~~d~~~~~~yhlA~sG~~f~~i~~~~~~l~~~Il~~~~VfAR 835 (1140)
T KOG0208|consen 756 LEPPEDDSIAQIVWLCVESQTQFLDPKEPDPDLASVKLSLDVLSEKDYHLAMSGKTFQVILEHFPELVPKILLKGTVFAR 835 (1140)
T ss_pred ccCCccCCCceeEEEEccCccccCCCCccCccccCCccChhhhccceeEEEecCchhHHHHhhcHHHHHHHHhcCeEEee
Confidence 11111111100 22334469999
Q ss_pred cChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 515 SLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 515 ~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
|+|.||.++++.||+. |+.|+|+|||.||+.||++||+||+.+
T Consensus 836 MsP~qK~~Lie~lQkl-~y~VgfCGDGANDCgALKaAdvGISLS 878 (1140)
T KOG0208|consen 836 MSPDQKAELIEALQKL-GYKVGFCGDGANDCGALKAADVGISLS 878 (1140)
T ss_pred cCchhHHHHHHHHHhc-CcEEEecCCCcchhhhhhhcccCcchh
Confidence 9999999999999997 999999999999999999999999987
No 22
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=1.8e-69 Score=592.64 Aligned_cols=416 Identities=25% Similarity=0.316 Sum_probs=348.4
Q ss_pred hccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCcccccCCCCeEEecceeecC
Q 044020 21 KKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMYEENPFLLAGTKVQGG 100 (563)
Q Consensus 21 ~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~k~~~~~~i~~Gt~v~~g 100 (563)
+.+.+++|+|||+++.|++++|+|||+|+|++||+|||||+|++|+. .||||+|||||.|+.|..++. ||+||.+.+|
T Consensus 240 l~p~~a~vir~g~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~-~vdes~lTGEs~Pv~k~~Gd~-V~aGt~~~~G 317 (741)
T PRK11033 240 LVPETATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFA-SFDESALTGESIPVERATGEK-VPAGATSVDR 317 (741)
T ss_pred CCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEecceEEEECcE-EeecccccCCCCCEecCCCCe-eccCCEEcCc
Confidence 34668999999999999999999999999999999999999999986 999999999999999987765 9999999999
Q ss_pred cEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhh
Q 044020 101 SGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADA 180 (563)
Q Consensus 101 ~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (563)
.+.++|+++|.+|.++++.+.+++++.+++|+++.+++++.++.++++.++++++++|.+++.
T Consensus 318 ~~~i~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~~----------------- 380 (741)
T PRK11033 318 LVTLEVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLFA----------------- 380 (741)
T ss_pred eEEEEEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------------
Confidence 999999999999999999999999999999999999999999999999999998887643321
Q ss_pred HHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeeeecccccccccCceEEEEEEEc
Q 044020 181 LTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIA 260 (563)
Q Consensus 181 ~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~ 260 (563)
..+...+..++++|+++|||+|.+++|+++..+..+++|+|+++|+++++|.|+++|++|||||||||+|+|+|.+++..
T Consensus 381 ~~~~~~i~~a~svlviacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~ 460 (741)
T PRK11033 381 APWQEWIYRGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPA 460 (741)
T ss_pred CCHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEec
Confidence 02334577789999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHHHHHHHHcCCChHHHhhhceEEE
Q 044020 261 NTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFKIVK 340 (563)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~~~~~~~~~ 340 (563)
+.. ..++++.+. ...+ ..+.||.++|+++++++.+.+
T Consensus 461 ~~~---------------~~~~~l~~a---a~~e-------------~~s~hPia~Ai~~~a~~~~~~------------ 497 (741)
T PRK11033 461 TGI---------------SESELLALA---AAVE-------------QGSTHPLAQAIVREAQVRGLA------------ 497 (741)
T ss_pred CCC---------------CHHHHHHHH---HHHh-------------cCCCCHHHHHHHHHHHhcCCC------------
Confidence 321 012222222 1111 123599999999998766532
Q ss_pred EecCCCCceeEE---EEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 044020 341 VEPFNSVRKKMS---VLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAF 417 (563)
Q Consensus 341 ~~~f~~~~~~~s---viv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~ 417 (563)
+||.++++.+. +....++.. +.-|+++.+.+ ++ +.+...++.+..+|++++++|+
T Consensus 498 -~~~~~~~~~~~g~Gv~~~~~g~~---~~ig~~~~~~~--------------~~----~~~~~~~~~~~~~g~~~v~va~ 555 (741)
T PRK11033 498 -IPEAESQRALAGSGIEGQVNGER---VLICAPGKLPP--------------LA----DAFAGQINELESAGKTVVLVLR 555 (741)
T ss_pred -CCCCcceEEEeeEEEEEEECCEE---EEEecchhhhh--------------cc----HHHHHHHHHHHhCCCEEEEEEE
Confidence 45655555542 111112222 22366665521 12 2234456678899999999984
Q ss_pred hccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhh
Q 044020 418 KDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEF 497 (563)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~ 497 (563)
|.+++|++.|+|++|++++++|++|+++|++++|+|||+..++..+|+++||.
T Consensus 556 ---------------~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~------------ 608 (741)
T PRK11033 556 ---------------NDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID------------ 608 (741)
T ss_pred ---------------CCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC------------
Confidence 45999999999999999999999999999999999999999999999999996
Q ss_pred hcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCCCC
Q 044020 498 RNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 498 ~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~~ 563 (563)
++++..|++|..+++.+++. +.|+|+|||.||.|||+.||+||||| +|++
T Consensus 609 -------------~~~~~~p~~K~~~v~~l~~~--~~v~mvGDgiNDapAl~~A~vgia~g-~~~~ 658 (741)
T PRK11033 609 -------------FRAGLLPEDKVKAVTELNQH--APLAMVGDGINDAPAMKAASIGIAMG-SGTD 658 (741)
T ss_pred -------------eecCCCHHHHHHHHHHHhcC--CCEEEEECCHHhHHHHHhCCeeEEec-CCCH
Confidence 77889999999999999964 68999999999999999999999999 7763
No 23
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-71 Score=573.35 Aligned_cols=459 Identities=25% Similarity=0.313 Sum_probs=374.7
Q ss_pred chhhHHHHHHHHHHHHHHH------hccCeeEEEECCE-EEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEecc
Q 044020 2 VTAISDYKQSLQFRDLDRE------KKKIFIQVTRDGQ-RQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESS 74 (563)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~------~~~~~~~V~r~g~-~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~ 74 (563)
|-++.+|.+.+.+.+.... +.+.++.+..+|. .++|+.+.|++||+|+|.||++||+||+|++|++ +||||+
T Consensus 350 fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~~g~~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss-~VDEs~ 428 (951)
T KOG0207|consen 350 FITLGRWLESLAKGKTSEALSKLMSLAPSKATIIEDGSEEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSS-EVDESL 428 (951)
T ss_pred HHHHHHHHHHHhhccchHHHHHHhhcCcccceEeecCCcceEeeeeeeccCCEEEECCCCccccccEEEeCce-eechhh
Confidence 3457788888877765543 3456788888886 8899999999999999999999999999999997 999999
Q ss_pred CcCCCCcccccCCCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044020 75 LSGQSEPRYMYEENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLE 154 (563)
Q Consensus 75 lTGes~p~~k~~~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (563)
+|||+.|+.|+.+.. |.+||++.+|.+.++++++|.+|.+++|.+++++++..+.|+|+.+|+++.+|.|.++++++.+
T Consensus 429 iTGEs~PV~Kk~gs~-ViaGsiN~nG~l~VkaT~~g~dttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t 507 (951)
T KOG0207|consen 429 ITGESMPVPKKKGST-VIAGSINLNGTLLVKATKVGGDTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLAT 507 (951)
T ss_pred ccCCceecccCCCCe-eeeeeecCCceEEEEEEeccccchHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHH
Confidence 999999999987776 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcC
Q 044020 155 FLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMG 234 (563)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~ 234 (563)
|++|++..... +..... ....+..+|+.++++++++|||+|.+++|++...+....+++|+++|..+.||.+.
T Consensus 508 ~~~w~~~g~~~---~~~~~~----~~~~~~~a~~~aisVlviACPCaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~h 580 (951)
T KOG0207|consen 508 FVVWILIGKIV---FKYPRS----FFDAFSHAFQLAISVLVIACPCALGLATPTAVMVATGVGATNGVLIKGGEALEKAH 580 (951)
T ss_pred HHHHHHHcccc---ccCcch----hhHHHHHHHHhhheEEEEECchhhhcCCceEEEEEechhhhcceEEcCcHHHHHHh
Confidence 99998655421 111111 22567889999999999999999999999999999999999999999999999999
Q ss_pred CeeeeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCcc
Q 044020 235 SASCICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPT 314 (563)
Q Consensus 235 ~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (563)
++++|+||||||||+|+|.|.++....+. .+.+-...+..+.. ..+.||+
T Consensus 581 kv~tVvFDKTGTLT~G~~~V~~~~~~~~~---------------~~~~e~l~~v~a~E---------------s~SeHPi 630 (951)
T KOG0207|consen 581 KVKTVVFDKTGTLTEGKPTVVDFKSLSNP---------------ISLKEALALVAAME---------------SGSEHPI 630 (951)
T ss_pred cCCEEEEcCCCceecceEEEEEEEecCCc---------------ccHHHHHHHHHHHh---------------cCCcCch
Confidence 99999999999999999999998776653 01111111222222 2234999
Q ss_pred HHHHHHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHH
Q 044020 315 ESAILEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQ 394 (563)
Q Consensus 315 e~al~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~ 394 (563)
.+|+.+|+++...... .-.......|..+... +-+...++. ..-|+-+.+... |...+
T Consensus 631 g~AIv~yak~~~~~~~----~~~~~~~~~~pg~g~~--~~~~~~~~~---i~iGN~~~~~r~--------~~~~~----- 688 (951)
T KOG0207|consen 631 GKAIVDYAKEKLVEPN----PEGVLSFEYFPGEGIY--VTVTVDGNE---VLIGNKEWMSRN--------GCSIP----- 688 (951)
T ss_pred HHHHHHHHHhcccccC----ccccceeecccCCCcc--cceEEeeeE---EeechHHHHHhc--------CCCCc-----
Confidence 9999999987661110 1111122222222211 112222222 344766665432 22211
Q ss_pred HHHHHHHHHHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHH
Q 044020 395 FRNITDVINGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINT 474 (563)
Q Consensus 395 ~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~ 474 (563)
+.++...+.....|+.+.+++ .|.++.|++.++|++|+++..+|..|++.|++++|+|||+..+
T Consensus 689 -~~i~~~~~~~e~~g~tvv~v~---------------vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a 752 (951)
T KOG0207|consen 689 -DDILDALTESERKGQTVVYVA---------------VNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAA 752 (951)
T ss_pred -hhHHHhhhhHhhcCceEEEEE---------------ECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHH
Confidence 236677777788899888887 4559999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 475 ARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 475 a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
|.++|+++|++. ||+++.|+||.++++.+|+. +..|+|+|||.||.|+|.+||+|
T Consensus 753 A~svA~~VGi~~------------------------V~aev~P~~K~~~Ik~lq~~-~~~VaMVGDGINDaPALA~AdVG 807 (951)
T KOG0207|consen 753 ARSVAQQVGIDN------------------------VYAEVLPEQKAEKIKEIQKN-GGPVAMVGDGINDAPALAQADVG 807 (951)
T ss_pred HHHHHHhhCcce------------------------EEeccCchhhHHHHHHHHhc-CCcEEEEeCCCCccHHHHhhccc
Confidence 999999999886 99999999999999999998 99999999999999999999999
Q ss_pred EeecCCCCC
Q 044020 555 LAMGIAGTE 563 (563)
Q Consensus 555 iamg~~~~~ 563 (563)
|||| .|++
T Consensus 808 Iaig-~gs~ 815 (951)
T KOG0207|consen 808 IAIG-AGSD 815 (951)
T ss_pred eeec-cccH
Confidence 9999 7764
No 24
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=1.2e-68 Score=568.17 Aligned_cols=418 Identities=38% Similarity=0.572 Sum_probs=361.0
Q ss_pred hhhHHHHHHHHHHHHHH-HhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCc
Q 044020 3 TAISDYKQSLQFRDLDR-EKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEP 81 (563)
Q Consensus 3 ~~~~~~~~~~~~~~l~~-~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p 81 (563)
+...+++.++..+++.+ ..++.+++|+|+| ++.|++++|+|||+|.+++||+|||||+|++|.+ .||||+|||||.|
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~g-~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g~~-~vdes~LTGEs~p 90 (499)
T TIGR01494 13 EVAAKRAAEDAIRSLKDLLVNPETVTVLRNG-WKEIPASDLVPGDIVLVKSGEIVPADGVLLSGSC-FVDESNLTGESVP 90 (499)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEEECC-eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEccE-EEEcccccCCCCC
Confidence 44555555556666555 2567789999999 9999999999999999999999999999999965 9999999999999
Q ss_pred ccccCCCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 044020 82 RYMYEENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVA-TIIGKIELFFSVLEFLVLIG 160 (563)
Q Consensus 82 ~~k~~~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 160 (563)
+.|.+++. +++|+.+.+|++.+.|+++|.+|..+++...+..+...++++++..++++ .++.++.++++++++++|+.
T Consensus 91 v~k~~g~~-v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 169 (499)
T TIGR01494 91 VLKTAGDA-VFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILFVLLIALAVFLFWAI 169 (499)
T ss_pred eeeccCCc-cccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988776 99999999999999999999999999999999887777899999999999 78877777777776666543
Q ss_pred HHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeeee
Q 044020 161 RFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCIC 240 (563)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i~ 240 (563)
.+... ..+...+..++++++++|||+|++++|+++..+..+++++|+++|+++++|.||++|++|
T Consensus 170 ~~~~~---------------~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~gilvk~~~~lE~l~~v~~i~ 234 (499)
T TIGR01494 170 GLWDP---------------NSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKKGIVVRSLNALEELGKVDYIC 234 (499)
T ss_pred HHccc---------------ccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHCCcEEechhhhhhccCCcEEE
Confidence 21100 024567889999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHHHH
Q 044020 241 TDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILE 320 (563)
Q Consensus 241 ~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~ 320 (563)
||||||||+|+|+|.+++..+. ++.++||.+.|+++
T Consensus 235 fDKTGTLT~~~~~v~~~~~~~~--------------------------------------------~~~s~hp~~~ai~~ 270 (499)
T TIGR01494 235 SDKTGTLTKNEMSFKKVSVLGG--------------------------------------------EYLSGHPDERALVK 270 (499)
T ss_pred eeCCCccccCceEEEEEEecCC--------------------------------------------CcCCCChHHHHHHH
Confidence 9999999999999999865421 02246999999999
Q ss_pred HHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHH
Q 044020 321 FGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITD 400 (563)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~ 400 (563)
+++.. .+...||++.+++|+++++.+++ .++||+++.+.+.|.. +.+
T Consensus 271 ~~~~~------------~~~~~~f~~~~~~~~~~~~~~~~---~~~~G~~~~i~~~~~~------------------~~~ 317 (499)
T TIGR01494 271 SAKWK------------ILNVFEFSSVRKRMSVIVRGPDG---TYVKGAPEFVLSRVKD------------------LEE 317 (499)
T ss_pred Hhhhc------------CcceeccCCCCceEEEEEecCCc---EEEeCCHHHHHHhhHH------------------HHH
Confidence 88642 13568999999999999886433 3689999999988852 122
Q ss_pred HHHHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH
Q 044020 401 VINGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAK 480 (563)
Q Consensus 401 ~~~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~ 480 (563)
..+.+..+|+|++++|++. +++|++.++|++|+++.++|+.|+++|++++|+|||+..++..+|+
T Consensus 318 ~~~~~~~~g~~~~~~a~~~---------------~~~g~i~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~ 382 (499)
T TIGR01494 318 KVKELAQSGLRVLAVASKE---------------TLLGLLGLEDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAK 382 (499)
T ss_pred HHHHHHhCCCEEEEEEECC---------------eEEEEEEecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Confidence 3345778999999999754 7999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 481 ECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 481 ~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
++|+ +++++|++|.++++.+|+. |+.|+|+|||.||.+||++||+|||||
T Consensus 383 ~lgi---------------------------~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~Advgia~~ 432 (499)
T TIGR01494 383 ELGI---------------------------FARVTPEEKAALVEALQKK-GRVVAMTGDGVNDAPALKKADVGIAMG 432 (499)
T ss_pred HcCc---------------------------eeccCHHHHHHHHHHHHHC-CCEEEEECCChhhHHHHHhCCCccccc
Confidence 9984 5789999999999999988 999999999999999999999999997
No 25
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-68 Score=526.93 Aligned_cols=489 Identities=26% Similarity=0.401 Sum_probs=392.1
Q ss_pred hhHHHHHHHHHHHHHHHhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCccc
Q 044020 4 AISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRY 83 (563)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~ 83 (563)
.+.||..-.....|.+.+ ..+++|+|||+|.++.++.||||||+.++.|++||||+++++|+.|.||+|+|||||.|+.
T Consensus 115 FveE~nAGn~aa~L~a~L-A~KakVlRDGkw~E~eAs~lVPGDIlsik~GdIiPaDaRLl~gD~LkiDQSAlTGESLpvt 193 (942)
T KOG0205|consen 115 FIEENNAGNAAAALMAGL-APKAKVLRDGKWSEQEASILVPGDILSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVT 193 (942)
T ss_pred eeeccccchHHHHHHhcc-CcccEEeecCeeeeeeccccccCceeeeccCCEecCccceecCCccccchhhhcCCccccc
Confidence 344444444455555443 4578999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044020 84 MYEENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFL 163 (563)
Q Consensus 84 k~~~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (563)
|.+++. +|+||.|++|.+.++|++||..|+.|+-..++.. ......+++.++.+-++..+.+. +++++.+ ...|+
T Consensus 194 Kh~gd~-vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqkVLt~IGn~ci~si~-~g~lie~--~vmy~ 268 (942)
T KOG0205|consen 194 KHPGDE-VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVLTGIGNFCICSIA-LGMLIEI--TVMYP 268 (942)
T ss_pred cCCCCc-eecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHHHHHhhhhHHHHHHH-HHHHHHH--Hhhhh
Confidence 998888 9999999999999999999999999999999887 66678899988888777654322 2222211 12222
Q ss_pred hccccccccccccchhhHHHHHHHHHHHHhhhhc-cCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeeeecc
Q 044020 164 GEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVA-VPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCICTD 242 (563)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~-~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i~~D 242 (563)
.. ....+.....+.++++. +|.++|..++++++.|..+|+++|.+.|...++|.|+.+|++|.|
T Consensus 269 ~q---------------~R~~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rLaqqgAItkrmtAIEemAGmdVLCSD 333 (942)
T KOG0205|consen 269 IQ---------------HRLYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSD 333 (942)
T ss_pred hh---------------hhhhhhhhhheheeeecccccccceeeeehhhHHHHHHHhcccHHHHHHHHHHhhCceEEeec
Confidence 11 11233333344444454 999999999999999999999999999999999999999999999
Q ss_pred cccccccCceEEEE--E--EEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHH
Q 044020 243 KTRMLTTNHMVVDK--I--WIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAI 318 (563)
Q Consensus 243 KTGTLT~~~~~v~~--i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al 318 (563)
||||||.|+++|.+ + +..+- +.+.+ ++.+.... .. ...+.+|.|+
T Consensus 334 KTGTLTlNkLSvdknl~ev~v~gv-----------------~~D~~--~L~A~rAs-r~-----------en~DAID~A~ 382 (942)
T KOG0205|consen 334 KTGTLTLNKLSVDKNLIEVFVKGV-----------------DKDDV--LLTAARAS-RK-----------ENQDAIDAAI 382 (942)
T ss_pred CcCceeecceecCcCcceeeecCC-----------------ChHHH--HHHHHHHh-hh-----------cChhhHHHHH
Confidence 99999999999987 2 21111 12211 11111111 10 1137789999
Q ss_pred HHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHH
Q 044020 319 LEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNI 398 (563)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i 398 (563)
+.... +..+.+..++.++..||++..||.+..+.++++....+.||+|++|++.|+. +.+.++++
T Consensus 383 v~~L~----dPKeara~ikevhF~PFnPV~Krta~ty~d~dG~~~r~sKGAPeqil~l~~~-----------~~~i~~~v 447 (942)
T KOG0205|consen 383 VGMLA----DPKEARAGIKEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGAPEQILKLCNE-----------DHDIPERV 447 (942)
T ss_pred HHhhc----CHHHHhhCceEEeeccCCccccceEEEEECCCCCEEEecCCChHHHHHHhhc-----------cCcchHHH
Confidence 98765 3578888999999999999999999999999999999999999999999973 34566788
Q ss_pred HHHHHHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHH
Q 044020 399 TDVINGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAI 478 (563)
Q Consensus 399 ~~~~~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~ 478 (563)
.+.+++|+++|+|.+++|++..++...+ .....+.|+|+.-+-||+|.++.++|++....|+.|.|+|||...-++..
T Consensus 448 h~~id~~AeRGlRSLgVArq~v~e~~~~--~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~VkmitgdqlaI~keT 525 (942)
T KOG0205|consen 448 HSIIDKFAERGLRSLAVARQEVPEKTKE--SPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKET 525 (942)
T ss_pred HHHHHHHHHhcchhhhhhhhcccccccc--CCCCCcccccccccCCCCccchHHHHHHHHhccceeeeecchHHHHHHhh
Confidence 9999999999999999999987765544 34566789999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCC--CCceeechhh----hcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCC
Q 044020 479 AKECGILTS--DGEAVEGPEF----RNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEAD 552 (563)
Q Consensus 479 a~~lgi~~~--~~~~~~g~~~----~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~ 552 (563)
++++|+-.+ ++..+.|..- ...+-.++..+..-|+.+.|+||.++|+.||++ ++.++|.|||.||.|+|+.||
T Consensus 526 grrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfpehKy~iV~~Lq~r-~hi~gmtgdgvndapaLKkAd 604 (942)
T KOG0205|consen 526 GRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPEHKYEIVKILQER-KHIVGMTGDGVNDAPALKKAD 604 (942)
T ss_pred hhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHHHHHHHHHHHhhc-CceecccCCCcccchhhcccc
Confidence 999998652 2122222211 111111556667789999999999999999999 999999999999999999999
Q ss_pred ceEeecCCCCC
Q 044020 553 IGLAMGIAGTE 563 (563)
Q Consensus 553 vgiamg~~~~~ 563 (563)
+|||+. .++|
T Consensus 605 igiava-~atd 614 (942)
T KOG0205|consen 605 IGIAVA-DATD 614 (942)
T ss_pred cceeec-cchh
Confidence 999998 7654
No 26
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=3.9e-67 Score=561.48 Aligned_cols=423 Identities=30% Similarity=0.404 Sum_probs=348.8
Q ss_pred hccCeeEEEECC-EEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCcccccCCCCeEEecceeec
Q 044020 21 KKKIFIQVTRDG-QRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMYEENPFLLAGTKVQG 99 (563)
Q Consensus 21 ~~~~~~~V~r~g-~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~k~~~~~~i~~Gt~v~~ 99 (563)
.++.+++|+||| ++++|++++|+|||+|.+++||+|||||+|++|+. .||||+|||||.|+.|..++. +|+||.+.+
T Consensus 52 ~~~~~~~v~r~~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~-~vdes~lTGEs~pv~k~~g~~-v~aGt~v~~ 129 (556)
T TIGR01525 52 LAPSTARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVVISGES-EVDESALTGESMPVEKKEGDE-VFAGTINGD 129 (556)
T ss_pred cCCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEeccceEEEecce-EEeehhccCCCCCEecCCcCE-EeeceEECC
Confidence 346689999996 99999999999999999999999999999999986 999999999999999987665 999999999
Q ss_pred CcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchh
Q 044020 100 GSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSAD 179 (563)
Q Consensus 100 g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (563)
|.++++|+++|.+|++|++.+.+.+++.+++|+++.++++++++.+++++++++++++|+....
T Consensus 130 g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~---------------- 193 (556)
T TIGR01525 130 GSLTIRVTKLGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGA---------------- 193 (556)
T ss_pred ceEEEEEEEecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------
Confidence 9999999999999999999999998888899999999999999999988888888877643210
Q ss_pred hHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeeeecccccccccCceEEEEEEE
Q 044020 180 ALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWI 259 (563)
Q Consensus 180 ~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~ 259 (563)
. ..+..++++++++|||+|++++|+++..+.++++++|+++|+++++|.|+++|++|||||||||+|+|+|.+++.
T Consensus 194 --~--~~~~~~~~vlv~~~P~al~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~ 269 (556)
T TIGR01525 194 --L--GALYRALAVLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEP 269 (556)
T ss_pred --c--hHHHHHHHHHhhccccchhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEe
Confidence 0 467788999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHHHHHHHHcCCChHHHhhhceEE
Q 044020 260 ANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFKIV 339 (563)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~~~~~~~~ 339 (563)
.+... ...++.+.+ +.... ..+.||.+.|+++++++.+.+...
T Consensus 270 ~~~~~-------------~~~~~~l~~---a~~~e-------------~~~~hp~~~Ai~~~~~~~~~~~~~-------- 312 (556)
T TIGR01525 270 LDDAS-------------ISEEELLAL---AAALE-------------QSSSHPLARAIVRYAKKRGLELPK-------- 312 (556)
T ss_pred cCCCC-------------ccHHHHHHH---HHHHh-------------ccCCChHHHHHHHHHHhcCCCccc--------
Confidence 54321 001222222 11111 123599999999999876644221
Q ss_pred EEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhc
Q 044020 340 KVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKD 419 (563)
Q Consensus 340 ~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~ 419 (563)
+| +. ...++.++..+++|+++..+..|+.. ..++.. ...+......+.++|++++.++
T Consensus 313 ---~~--~~------~~~~~~gi~~~~~g~~~~~lg~~~~~-~~~~~~-------~~~~~~~~~~~~~~g~~~~~v~--- 370 (556)
T TIGR01525 313 ---QE--DV------EEVPGKGVEATVDGQEEVRIGNPRLL-ELAAEP-------ISASPDLLNEGESQGKTVVFVA--- 370 (556)
T ss_pred ---cc--Ce------eEecCCeEEEEECCeeEEEEecHHHH-hhcCCC-------chhhHHHHHHHhhCCcEEEEEE---
Confidence 11 00 01134455555666555555555432 111111 1122344566778899998887
Q ss_pred cCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCC-CeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhh
Q 044020 420 LNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAG-ITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFR 498 (563)
Q Consensus 420 l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~g-i~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~ 498 (563)
.|.+++|.+.++|+++|+++++|++|+++| ++++|+|||+...+..+++++|+..
T Consensus 371 ------------~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~------------ 426 (556)
T TIGR01525 371 ------------VDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE------------ 426 (556)
T ss_pred ------------ECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe------------
Confidence 345999999999999999999999999999 9999999999999999999999976
Q ss_pred cCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCCC
Q 044020 499 NMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAGT 562 (563)
Q Consensus 499 ~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~ 562 (563)
+|+++.|++|.++++.++.. ++.|+|+|||.||++|++.||+|++|| +++
T Consensus 427 ------------~f~~~~p~~K~~~v~~l~~~-~~~v~~vGDg~nD~~al~~A~vgia~g-~~~ 476 (556)
T TIGR01525 427 ------------VHAELLPEDKLAIVKELQEE-GGVVAMVGDGINDAPALAAADVGIAMG-AGS 476 (556)
T ss_pred ------------eeccCCHHHHHHHHHHHHHc-CCEEEEEECChhHHHHHhhCCEeEEeC-CCC
Confidence 99999999999999999987 899999999999999999999999999 664
No 27
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=2.7e-66 Score=553.04 Aligned_cols=406 Identities=28% Similarity=0.380 Sum_probs=331.8
Q ss_pred ccCeeEEEEC-CEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCcccccCCCCeEEecceeecC
Q 044020 22 KKIFIQVTRD-GQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMYEENPFLLAGTKVQGG 100 (563)
Q Consensus 22 ~~~~~~V~r~-g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~k~~~~~~i~~Gt~v~~g 100 (563)
.+.+++|+|+ |.+++|++++|+|||+|.|++||+|||||+|++|++ .||||+|||||.|+.|..++. ||+||.+.+|
T Consensus 89 ~p~~a~~~~~~~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~-~vdes~lTGEs~pv~k~~gd~-V~aGt~~~~g 166 (562)
T TIGR01511 89 QPSTATLLTKDGSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGES-EVDESLVTGESLPVPKKVGDP-VIAGTVNGTG 166 (562)
T ss_pred CCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEecCceEEEECce-EEehHhhcCCCCcEEcCCCCE-EEeeeEECCc
Confidence 4567888885 677999999999999999999999999999999987 999999999999999988776 9999999999
Q ss_pred cEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhh
Q 044020 101 SGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADA 180 (563)
Q Consensus 101 ~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (563)
++.++|+++|.+|.++++.+.+.+++.+++|+++..+++++++.+++++++++++++|.
T Consensus 167 ~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~--------------------- 225 (562)
T TIGR01511 167 SLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL--------------------- 225 (562)
T ss_pred eEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 99999999999999999999999999999999999999999999998887777776542
Q ss_pred HHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeeeecccccccccCceEEEEEEEc
Q 044020 181 LTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIA 260 (563)
Q Consensus 181 ~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~ 260 (563)
..+..++++|+++|||+|++++|+++..+..+++++|+++|+++++|.|+++|++|||||||||+|+|.|.++...
T Consensus 226 ----~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~v~~i~~~ 301 (562)
T TIGR01511 226 ----FALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPTVTDVHVF 301 (562)
T ss_pred ----HHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEEEEEEecC
Confidence 2467789999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHHHHHHHHcCCChHHHhhhceEEE
Q 044020 261 NTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFKIVK 340 (563)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~~~~~~~~~ 340 (563)
+... .++.+.+. ...+. .+.||.+.|+++++++.+.+... ..-.+
T Consensus 302 ~~~~---------------~~~~l~~a---a~~e~-------------~s~HPia~Ai~~~~~~~~~~~~~----~~~~~ 346 (562)
T TIGR01511 302 GDRD---------------RTELLALA---AALEA-------------GSEHPLAKAIVSYAKEKGITLVE----VSDFK 346 (562)
T ss_pred CCCC---------------HHHHHHHH---HHHhc-------------cCCChHHHHHHHHHHhcCCCcCC----CCCeE
Confidence 3310 12223322 22221 12499999999999876543211 11111
Q ss_pred EecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhcc
Q 044020 341 VEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDL 420 (563)
Q Consensus 341 ~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l 420 (563)
.+| .+.+.. ...+ ..+..|+++.+.+. +. .+++ +.++|.+++.++
T Consensus 347 ~~~----g~Gi~~--~~~g---~~~~iG~~~~~~~~--------~~--~~~~------------~~~~g~~~~~~~---- 391 (562)
T TIGR01511 347 AIP----GIGVEG--TVEG---TKIQLGNEKLLGEN--------AI--KIDG------------KAEQGSTSVLVA---- 391 (562)
T ss_pred EEC----CceEEE--EECC---EEEEEECHHHHHhC--------CC--CCCh------------hhhCCCEEEEEE----
Confidence 111 111111 1122 12334666655321 11 1111 224566666554
Q ss_pred CCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcC
Q 044020 421 NDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNM 500 (563)
Q Consensus 421 ~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~ 500 (563)
.|.+++|++.++|+++|+++++|++|++.|++++|+|||+...+..+++++|++
T Consensus 392 -----------~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--------------- 445 (562)
T TIGR01511 392 -----------VNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--------------- 445 (562)
T ss_pred -----------ECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc---------------
Confidence 567999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCCC
Q 044020 501 SPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAGT 562 (563)
Q Consensus 501 ~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~ 562 (563)
+|++..|++|.++++.++++ +++|+|+|||.||++|++.||+||+|| +++
T Consensus 446 ----------~~~~~~p~~K~~~v~~l~~~-~~~v~~VGDg~nD~~al~~A~vgia~g-~g~ 495 (562)
T TIGR01511 446 ----------VRAEVLPDDKAALIKELQEK-GRVVAMVGDGINDAPALAQADVGIAIG-AGT 495 (562)
T ss_pred ----------EEccCChHHHHHHHHHHHHc-CCEEEEEeCCCccHHHHhhCCEEEEeC-CcC
Confidence 78889999999999999998 899999999999999999999999999 765
No 28
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=4e-65 Score=569.69 Aligned_cols=440 Identities=26% Similarity=0.343 Sum_probs=355.8
Q ss_pred hhHHHHHHHHHHHHHH----H--hccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcC
Q 044020 4 AISDYKQSLQFRDLDR----E--KKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSG 77 (563)
Q Consensus 4 ~~~~~~~~~~~~~l~~----~--~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTG 77 (563)
.+.+|.+++...+..+ . ..+.+++|+|||.+++|++++|+|||+|.|++||+||+||+|++|+. .||||+|||
T Consensus 297 ~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~~~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~-~vdeS~lTG 375 (834)
T PRK10671 297 NLGHMLEARARQRSSKALEKLLDLTPPTARVVTDEGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEA-WLDEAMLTG 375 (834)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCcEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceE-EEeehhhcC
Confidence 3445555554443332 2 34667899999999999999999999999999999999999999975 999999999
Q ss_pred CCCcccccCCCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044020 78 QSEPRYMYEENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLV 157 (563)
Q Consensus 78 es~p~~k~~~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (563)
||.|+.|..++. ||+||.+.+|.+.++|+++|.+|.++++.+++++++..++|+++..++++.++.+++++++++++++
T Consensus 376 Es~pv~k~~gd~-V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~ 454 (834)
T PRK10671 376 EPIPQQKGEGDS-VHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAI 454 (834)
T ss_pred CCCCEecCCCCE-EEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987765 9999999999999999999999999999999999988999999999999999999999888888877
Q ss_pred HHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCee
Q 044020 158 LIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSAS 237 (563)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~ 237 (563)
|++. .. + ..+...+..++++|+++|||+|++++|+++..+..+++++|+++|+++++|.|+++|
T Consensus 455 ~~~~--~~---------~-----~~~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~ 518 (834)
T PRK10671 455 WYFF--GP---------A-----PQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLD 518 (834)
T ss_pred HHHh--CC---------c-----hHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCC
Confidence 6432 10 0 124556788999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHH
Q 044020 238 CICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESA 317 (563)
Q Consensus 238 ~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a 317 (563)
++|||||||||+|+|+|.+++..+... ..+. +..+...+.. +.||.+.|
T Consensus 519 ~v~fDKTGTLT~g~~~v~~~~~~~~~~---------------~~~~---l~~a~~~e~~-------------s~hp~a~A 567 (834)
T PRK10671 519 TLVFDKTGTLTEGKPQVVAVKTFNGVD---------------EAQA---LRLAAALEQG-------------SSHPLARA 567 (834)
T ss_pred EEEEcCCCccccCceEEEEEEccCCCC---------------HHHH---HHHHHHHhCC-------------CCCHHHHH
Confidence 999999999999999999876543210 1122 2222222222 24999999
Q ss_pred HHHHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHH
Q 044020 318 ILEFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRN 397 (563)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~ 397 (563)
+++++...... ...+|+....+ .+.... ++. .+..|+++.+.+.. ++ .+.
T Consensus 568 i~~~~~~~~~~-----------~~~~~~~~~g~-Gv~~~~-~g~--~~~~G~~~~~~~~~------------~~---~~~ 617 (834)
T PRK10671 568 ILDKAGDMTLP-----------QVNGFRTLRGL-GVSGEA-EGH--ALLLGNQALLNEQQ------------VD---TKA 617 (834)
T ss_pred HHHHHhhCCCC-----------CcccceEecce-EEEEEE-CCE--EEEEeCHHHHHHcC------------CC---hHH
Confidence 99987632210 11223322211 111111 222 23458888764321 11 123
Q ss_pred HHHHHHHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHH
Q 044020 398 ITDVINGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARA 477 (563)
Q Consensus 398 i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~ 477 (563)
+.+.++.+.++|.+++.+++ +..++|++.+.|++||+++++|++|++.|++++|+|||+...+..
T Consensus 618 ~~~~~~~~~~~g~~~v~va~---------------~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ 682 (834)
T PRK10671 618 LEAEITAQASQGATPVLLAV---------------DGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANA 682 (834)
T ss_pred HHHHHHHHHhCCCeEEEEEE---------------CCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHH
Confidence 45556677888999888874 348999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEee
Q 044020 478 IAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAM 557 (563)
Q Consensus 478 ~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiam 557 (563)
+++++|+.. +|++..|++|.++++.++.+ ++.|+|+|||.||++|++.||+||||
T Consensus 683 ia~~lgi~~------------------------~~~~~~p~~K~~~i~~l~~~-~~~v~~vGDg~nD~~al~~Agvgia~ 737 (834)
T PRK10671 683 IAKEAGIDE------------------------VIAGVLPDGKAEAIKRLQSQ-GRQVAMVGDGINDAPALAQADVGIAM 737 (834)
T ss_pred HHHHcCCCE------------------------EEeCCCHHHHHHHHHHHhhc-CCEEEEEeCCHHHHHHHHhCCeeEEe
Confidence 999999986 99999999999999999998 99999999999999999999999999
Q ss_pred cCCCCC
Q 044020 558 GIAGTE 563 (563)
Q Consensus 558 g~~~~~ 563 (563)
| +|++
T Consensus 738 g-~g~~ 742 (834)
T PRK10671 738 G-GGSD 742 (834)
T ss_pred c-CCCH
Confidence 9 7764
No 29
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=1.6e-65 Score=545.42 Aligned_cols=401 Identities=27% Similarity=0.341 Sum_probs=328.2
Q ss_pred ccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCcccccCCCCeEEecceeecCc
Q 044020 22 KKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMYEENPFLLAGTKVQGGS 101 (563)
Q Consensus 22 ~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~k~~~~~~i~~Gt~v~~g~ 101 (563)
++.+++|+|||+++.+++++|+|||+|.|++||+|||||+|++|+. .||||+|||||.|+.|..++. +|+||.+.+|.
T Consensus 53 ~~~~~~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~-~vdes~lTGEs~pv~k~~g~~-v~aGt~v~~G~ 130 (536)
T TIGR01512 53 APDTARVLRGGSLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTS-TVDESALTGESVPVEKAPGDE-VFAGAINLDGV 130 (536)
T ss_pred CCCEEEEEECCEEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcE-EEEecccCCCCCcEEeCCCCE-EEeeeEECCce
Confidence 5678999999999999999999999999999999999999999976 999999999999999987665 99999999999
Q ss_pred EEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhH
Q 044020 102 GKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADAL 181 (563)
Q Consensus 102 ~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (563)
++++|++||.+|++|++.+.+.+++.+++|+++.++++++++.++++.++++++++|.+. . .|
T Consensus 131 ~~~~V~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~------ 193 (536)
T TIGR01512 131 LTIVVTKLPADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLL--K---------RW------ 193 (536)
T ss_pred EEEEEEEeccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c---------cc------
Confidence 999999999999999999999988888999999999999999999888777766654321 0 01
Q ss_pred HHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeeeecccccccccCceEEEEEEEcC
Q 044020 182 TLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIAN 261 (563)
Q Consensus 182 ~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~ 261 (563)
...+..++++++++|||+|++++|+++..+.++++++|+++|+++++|.++++|++|||||||||+|+|+|.+++..
T Consensus 194 --~~~~~~~~svlv~~~P~aL~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~- 270 (536)
T TIGR01512 194 --PFWVYRALVLLVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVPA- 270 (536)
T ss_pred --HHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeHH-
Confidence 12677789999999999999999999999999999999999999999999999999999999999999999987421
Q ss_pred eeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHHHHHHHHcCCChHHHhhhceEEEE
Q 044020 262 TISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAILEFGLRLGGDFEAQRREFKIVKV 341 (563)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~~~~~~~~~~ 341 (563)
+++... .... ..+.||.+.|+++++.+.+ .+.-...
T Consensus 271 --------------------~~l~~a---~~~e-------------~~~~hp~~~Ai~~~~~~~~--------~~~~~~~ 306 (536)
T TIGR01512 271 --------------------EVLRLA---AAAE-------------QASSHPLARAIVDYARKRE--------NVESVEE 306 (536)
T ss_pred --------------------HHHHHH---HHHh-------------ccCCCcHHHHHHHHHHhcC--------CCcceEE
Confidence 122222 1111 1225999999999987653 1111111
Q ss_pred ecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccC
Q 044020 342 EPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLN 421 (563)
Q Consensus 342 ~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~ 421 (563)
.|. +.+. ....+.. +..|+++.+.+. + + ..+..+|.+++.++
T Consensus 307 ~~g----~gi~--~~~~g~~---~~ig~~~~~~~~--------~----~------------~~~~~~~~~~~~v~----- 348 (536)
T TIGR01512 307 VPG----EGVR--AVVDGGE---VRIGNPRSLEAA--------V----G------------ARPESAGKTIVHVA----- 348 (536)
T ss_pred ecC----CeEE--EEECCeE---EEEcCHHHHhhc--------C----C------------cchhhCCCeEEEEE-----
Confidence 111 1111 1112222 223665443211 0 0 02334455554443
Q ss_pred CCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCC-eEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcC
Q 044020 422 DSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGI-TVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNM 500 (563)
Q Consensus 422 ~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi-~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~ 500 (563)
.|..++|.+.++|+++|+++++|++|+++|+ +++++|||+...+..+++++|+.+
T Consensus 349 ----------~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-------------- 404 (536)
T TIGR01512 349 ----------RDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-------------- 404 (536)
T ss_pred ----------ECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh--------------
Confidence 5679999999999999999999999999999 999999999999999999999986
Q ss_pred CCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCC
Q 044020 501 SPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAG 561 (563)
Q Consensus 501 ~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~ 561 (563)
+|++..|++|..+++.++.. ++.|+|+|||.||++|++.||+||+||.++
T Consensus 405 ----------~f~~~~p~~K~~~i~~l~~~-~~~v~~vGDg~nD~~al~~A~vgia~g~~~ 454 (536)
T TIGR01512 405 ----------VHAELLPEDKLEIVKELREK-YGPVAMVGDGINDAPALAAADVGIAMGASG 454 (536)
T ss_pred ----------hhhccCcHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHhCCEEEEeCCCc
Confidence 89999999999999999998 899999999999999999999999999434
No 30
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-66 Score=526.24 Aligned_cols=506 Identities=24% Similarity=0.352 Sum_probs=385.0
Q ss_pred HHHHHHHHHHHHHHhc-cCeeEEEECCEEEEeecCCcccCcEEEeCC---CCeeeceEEEEeeCceEEEeccCcCCCCcc
Q 044020 7 DYKQSLQFRDLDREKK-KIFIQVTRDGQRQKVCTYDLVVGDIVHLSI---GDQVPAYGIFISGHSLLIDESSLSGQSEPR 82 (563)
Q Consensus 7 ~~~~~~~~~~l~~~~~-~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~---G~~iPaD~~ll~g~~l~Vdes~lTGes~p~ 82 (563)
-+++-+...++.+.-+ +..+.|.|+++|+.+.++||.|||+|.|.. ...+|||.+++.|++ .|||++|||||.|.
T Consensus 235 V~Qrm~~lse~R~Mg~kpy~I~v~R~kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~Gsc-iVnEaMLtGESvPl 313 (1160)
T KOG0209|consen 235 VKQRMRTLSEFRTMGNKPYTINVYRNKKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGSC-IVNEAMLTGESVPL 313 (1160)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEecCcceeccccccCCCceEEeccCcccCcCCceEEEEecce-eechhhhcCCCccc
Confidence 3455555555555543 456899999999999999999999999998 558999999999986 89999999999998
Q ss_pred ccc----------------CCCCeEEecceee-------------cCcEEEEEEEEcccchhHHHHHHhccCCCCCCchH
Q 044020 83 YMY----------------EENPFLLAGTKVQ-------------GGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQ 133 (563)
Q Consensus 83 ~k~----------------~~~~~i~~Gt~v~-------------~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~ 133 (563)
.|. ....++|+||+++ +|...+.|++||.+|..|++++.+..+..+-+.-.
T Consensus 314 ~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~VlrTGFeTSQGkLvRtilf~aervTaNn 393 (1160)
T KOG0209|consen 314 MKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYVLRTGFETSQGKLVRTILFSAERVTANN 393 (1160)
T ss_pred cccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEEEeccccccCCceeeeEEecceeeeecc
Confidence 885 1345799999997 57789999999999999999999988554444322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 044020 134 VKLNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFA 213 (563)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~ 213 (563)
+. +.+|+.+.++ |.+...++.+ ..+. . ....+-+..|.-++.+|...+|+.||+-++++.-.+
T Consensus 394 ~E----tf~FILFLlV-----FAiaAa~Yvw---v~Gs-k----d~~RsrYKL~LeC~LIlTSVvPpELPmELSmAVNsS 456 (1160)
T KOG0209|consen 394 RE----TFIFILFLLV-----FAIAAAGYVW---VEGS-K----DPTRSRYKLFLECTLILTSVVPPELPMELSMAVNSS 456 (1160)
T ss_pred HH----HHHHHHHHHH-----HHHHhhheEE---Eecc-c----CcchhhhheeeeeeEEEeccCCCCCchhhhHHHHHH
Confidence 22 1222222222 2222111111 1000 0 011233455667777888889999999999999999
Q ss_pred HHHHhhCCCeeecchhhhhcCCeeeeecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHh
Q 044020 214 MKKLMNDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQ 293 (563)
Q Consensus 214 ~~~l~~~~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (563)
...|+|.+++|..|..+.-+|++|+.|||||||||...|.|.++.-......... ..+....+.... +..
T Consensus 457 L~ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~------~~s~~p~~t~~v----lAs 526 (1160)
T KOG0209|consen 457 LIALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALT------PASKAPNETVLV----LAS 526 (1160)
T ss_pred HHHHHHhceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCccccc------chhhCCchHHHH----HHH
Confidence 9999999999999999999999999999999999999999999765333211100 011111222222 223
Q ss_pred ccCCceeecCCCCceecCCccHHHHHHHH-HHcCCC-----hHHHhhhceEEEEecCCCCceeEEEEEEcCC----CeEE
Q 044020 294 NTGSKVVKDKDGKNSILGTPTESAILEFG-LRLGGD-----FEAQRREFKIVKVEPFNSVRKKMSVLIALPA----GGMR 363 (563)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~e~al~~~~-~~~~~~-----~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~----~~~~ 363 (563)
||+.-...+ ...|||.|+|.++.. +..... .+...+..++.+.++|+|.-|||||++...+ -.++
T Consensus 527 cHsLv~le~-----~lVGDPlEKA~l~~v~W~~~k~~~v~p~~~~~~~lkI~~ryhFsSaLKRmsvva~~~~~g~s~k~~ 601 (1160)
T KOG0209|consen 527 CHSLVLLED-----KLVGDPLEKATLEAVGWNLEKKNSVCPREGNGKKLKIIQRYHFSSALKRMSVVASHQGPGSSEKYF 601 (1160)
T ss_pred HHHHHHhcC-----cccCChHHHHHHHhcCcccccCcccCCCcCCCcccchhhhhhHHHHHHHHHhhhhcccCCCceEEE
Confidence 333221111 277999999999976 322111 1122235778899999999999999997754 2688
Q ss_pred EEEeCChhHHHhcccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCC------CCCCCCCCCCceEE
Q 044020 364 AFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDS------SNENNIPDSGYTLI 437 (563)
Q Consensus 364 ~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~------~~~~~~~~~~~~~l 437 (563)
+.+||+||.+..+-... ...+.+.+.+|+++|.||+|++||++..- +.++..+|.+++|.
T Consensus 602 ~aVKGAPEvi~~ml~dv--------------P~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q~rd~~Re~vEsdLtFa 667 (1160)
T KOG0209|consen 602 VAVKGAPEVIQEMLRDV--------------PKDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQVRDLKREDVESDLTFA 667 (1160)
T ss_pred EEecCCHHHHHHHHHhC--------------chhHHHHHHHHhhccceEEEEecccccccchhhhhhhhhhhhhhcceee
Confidence 99999999998765432 25678889999999999999999999842 24557899999999
Q ss_pred EEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCC-----------------------------
Q 044020 438 AVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSD----------------------------- 488 (563)
Q Consensus 438 G~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~----------------------------- 488 (563)
|++.|..|++++++++|+.|++++++++|+|||++.+|.++|+++||....
T Consensus 668 GFlif~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~ 747 (1160)
T KOG0209|consen 668 GFLIFSCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLK 747 (1160)
T ss_pred eeEEEeCCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCC
Confidence 999999999999999999999999999999999999999999999987531
Q ss_pred ------------CceeechhhhcCCCC----CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCC
Q 044020 489 ------------GEAVEGPEFRNMSPA----DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEAD 552 (563)
Q Consensus 489 ------------~~~~~g~~~~~~~~~----~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~ 552 (563)
+.+++|..++.+... .+++.+.||||+.|.||..++..+++. |+.++|+|||.||+.||++||
T Consensus 748 p~~~~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~-Gy~TLMCGDGTNDVGALK~Ah 826 (1160)
T KOG0209|consen 748 PGKKKTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKKL-GYVTLMCGDGTNDVGALKQAH 826 (1160)
T ss_pred CCccchhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHhc-CeEEEEecCCCcchhhhhhcc
Confidence 235556666555444 567778899999999999999999997 999999999999999999999
Q ss_pred ceEeecCCC
Q 044020 553 IGLAMGIAG 561 (563)
Q Consensus 553 vgiamg~~~ 561 (563)
||||.= |+
T Consensus 827 VGVALL-~~ 834 (1160)
T KOG0209|consen 827 VGVALL-NN 834 (1160)
T ss_pred cceehh-cC
Confidence 999987 44
No 31
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-62 Score=535.85 Aligned_cols=544 Identities=24% Similarity=0.337 Sum_probs=428.8
Q ss_pred chhhHHHHHHHHHHHHHHHhccCeeEEEECCE-EEEeecCCcccCcEEEeCCCCeeeceEEEEeeCc----eEEEeccCc
Q 044020 2 VTAISDYKQSLQFRDLDREKKKIFIQVTRDGQ-RQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHS----LLIDESSLS 76 (563)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~-~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~----l~Vdes~lT 76 (563)
+|+++|..++.++++.|++.|+.++.|.|++. ++...|++|++||+|.+..++.+|||.++++++. |+|+++.|+
T Consensus 93 ~t~iKd~~eD~rR~~~D~~iN~~~~~v~~~~~~~~~~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT~nLD 172 (1151)
T KOG0206|consen 93 ITAIKDAIEDYRRHKQDKEVNNRKVEVLRGDGCFVEKKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGICYVETANLD 172 (1151)
T ss_pred HHHHHHHHhhhhhhhccHHhhcceeEEecCCceeeeeccceeeeeeEEEeccCCccccceEEecCCCCCceeEEEEeecC
Confidence 68999999999999999999999999999644 8999999999999999999999999999998764 899999999
Q ss_pred CCCCccccc----------------------------------------------CCCCeEEecceeec-CcEEEEEEEE
Q 044020 77 GQSEPRYMY----------------------------------------------EENPFLLAGTKVQG-GSGKMLVTTV 109 (563)
Q Consensus 77 Ges~p~~k~----------------------------------------------~~~~~i~~Gt~v~~-g~~~~~V~~t 109 (563)
||+..+.|+ ..+++++.|+++.+ .++.+.|+.|
T Consensus 173 GEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~vv~t 252 (1151)
T KOG0206|consen 173 GETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGVVVFT 252 (1151)
T ss_pred CccccceeeehhhhhcccccccccccCCceEEcCCcccHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEEEEEc
Confidence 999876664 11235778888887 4589999999
Q ss_pred cccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhh---HHHHHH
Q 044020 110 GMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADA---LTLIDY 186 (563)
Q Consensus 110 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 186 (563)
|.+| +++++...++.+++++++..+.....+..+.+.++++..+...... ..+.......|+.... ...+..
T Consensus 253 G~dt---K~~~n~~~~~~Krs~ier~~n~~i~~~~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1151)
T KOG0206|consen 253 GHDT---KLMQNSGKPPSKRSRIERKMNKIIILLFVLLILMCLISAIGFAIWT--RQDGRHNGEWWYLSPSEAAYAGFVH 327 (1151)
T ss_pred CCcc---hHHHhcCCCccccchhhhhhhhhHHHHHHHHHHHHHHHHhhhheee--eecccccCchhhhcCchHHHHHHHH
Confidence 9999 5555666688999999999998777766665555555444322111 1110010123333321 233455
Q ss_pred HHHHHHhhhhccCCchHHHHHHHHHHHHH------HHh----hCCCeeecchhhhhcCCeeeeecccccccccCceEEEE
Q 044020 187 FAVVVTIIDVAVPEGLPLAVTLSLAFAMK------KLM----NDGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDK 256 (563)
Q Consensus 187 ~~~~i~ili~~~P~~l~~~~~~~~~~~~~------~l~----~~~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~ 256 (563)
|..++.++...+|..|.+.+.+.-...+. .|. ...+.+|+.+.-|.||++++|+.|||||||.|.|++.+
T Consensus 328 f~t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~my~~e~d~~~~~rtsnl~eeLGqv~yIfSDKTGTLT~N~M~F~k 407 (1151)
T KOG0206|consen 328 FLTFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDMYDEETDTPAQARTSNLNEELGQVEYIFSDKTGTLTQNSMEFKK 407 (1151)
T ss_pred HHHHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHhhhccCCCccccccCCchhhhcceeEEEEcCcCccccceeeeec
Confidence 66667777788999988877666544332 232 34688999999999999999999999999999999999
Q ss_pred EEEcCeeeeecCCCcc------c----------ccc------------ccccHHHHHHHHHHHHhccCCceeecCC--CC
Q 044020 257 IWIANTISNVEGNNRK------D----------ILQ------------SEISERVLDITLQAIFQNTGSKVVKDKD--GK 306 (563)
Q Consensus 257 i~~~~~~~~~~~~~~~------~----------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 306 (563)
+.+.+..|........ . ... ..........+..++.+||+..+..+++ ..
T Consensus 408 Csi~g~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~f~~~la~chtv~~e~~~~~~~~ 487 (1151)
T KOG0206|consen 408 CSINGTSYGRNVTEVEAALAKRSGGDVNEHKIKGFTFEDSRLVDGLWSSEPQAEDILEFFRALALCHTVIPEKDEDSGKL 487 (1151)
T ss_pred ccccCcccccCCChhhcccCccccccccccccccceeccchhhccccccccCcchHHHHhhHHhccceeeeccCCCccce
Confidence 9999988865432210 0 000 0012234445667888888887776333 35
Q ss_pred ceecCCccHHHHHHHHHHcCCChHH------------HhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHH
Q 044020 307 NSILGTPTESAILEFGLRLGGDFEA------------QRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVL 374 (563)
Q Consensus 307 ~~~~~~~~e~al~~~~~~~~~~~~~------------~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il 374 (563)
.+...+|+|.|+++.|+..|+.+-. ....|+++...+|++.||||||+++.+++.+.+|+||+...|+
T Consensus 488 ~Y~A~SPDE~AlV~aAr~~gf~f~~Rt~~~vti~~~g~~~~y~lL~iLeF~S~RKRMSVIVR~p~g~i~LycKGADsvI~ 567 (1151)
T KOG0206|consen 488 SYEAESPDEAALVEAARELGFVFLGRTPDSVTIRELGVEETYELLNVLEFNSTRKRMSVIVRDPDGRILLYCKGADSVIF 567 (1151)
T ss_pred eeecCCCcHHHHHHHHHhcCceeeeccCceEEEeccccceeEEEEEEeccccccceeEEEEEcCCCcEEEEEcCcchhhH
Confidence 6888999999999999999986532 2458999999999999999999999999999999999999999
Q ss_pred hcccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCCCCC-----------------------CCCC
Q 044020 375 SMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSSNEN-----------------------NIPD 431 (563)
Q Consensus 375 ~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~-----------------------~~~~ 431 (563)
++++. -.+...++..++++.|+.+|+|++|+|||.+++++++. ..+|
T Consensus 568 erL~~----------~~~~~~e~T~~Hl~~yA~eGLRTLc~A~r~l~e~eY~~w~~~~~~A~ts~~~Re~~L~e~ae~iE 637 (1151)
T KOG0206|consen 568 ERLSK----------NGEKLREKTQEHLEEYATEGLRTLCLAYRELDEEEYEEWNERYNEAKTSLTDREELLDEVAEEIE 637 (1151)
T ss_pred hhhhh----------cchHHHHHHHHHHHHHHhhhhhHhhhhhhccCHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 99874 23456677888999999999999999999999886321 4779
Q ss_pred CCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCC-----------------------
Q 044020 432 SGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSD----------------------- 488 (563)
Q Consensus 432 ~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~----------------------- 488 (563)
+|+.++|..+++|+++++++++|+.|+++|||+|++|||..++|..++..|++.+.+
T Consensus 638 k~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~~m~~i~i~~~~~~~~~~~~~~~~~ 717 (1151)
T KOG0206|consen 638 KDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLRQDMKLIIINTETSEELSSLDATAAL 717 (1151)
T ss_pred hcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCCCCceEEEEecCChhhhcchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999987642
Q ss_pred ------------------------CceeechhhhcCCCC---------CCCcceeEEEecChhhHHHHHHHHHHhcCCEE
Q 044020 489 ------------------------GEAVEGPEFRNMSPA---------DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVV 535 (563)
Q Consensus 489 ------------------------~~~~~g~~~~~~~~~---------~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v 535 (563)
..+++|+.+....+. ...++..+.||++|.||+.+++..++..+..+
T Consensus 718 ~~~l~~~~~~~~~~~~~~~~~~~~aLVIDGktl~~aL~~~~~~~Fl~la~~C~sViCCR~sPlQKA~Vv~lVk~~~~~~T 797 (1151)
T KOG0206|consen 718 KETLLRKFTEELEEAKLEHSEKPFALVIDGKTLAYALEDELRKKFLELAKRCKSVICCRVSPLQKALVVKLVKKGLKAVT 797 (1151)
T ss_pred HHHHHHhhhHHHHHHhhccCcCCceEEEECHHHHhhhCchhhHHHHHHHHhcCEEEEccCCHHHHHHHHHHHHhcCCceE
Confidence 234444444332222 23466779999999999999999987778999
Q ss_pred EEEcCCccCHHHHhhCCceEeecCCCC
Q 044020 536 AVTGDGTNDASALHEADIGLAMGIAGT 562 (563)
Q Consensus 536 ~~iGDg~ND~~~l~~a~vgiamg~~~~ 562 (563)
++||||.||++|++.||||| |++|.
T Consensus 798 LAIGDGANDVsMIQ~AhVGV--GIsG~ 822 (1151)
T KOG0206|consen 798 LAIGDGANDVSMIQEAHVGV--GISGQ 822 (1151)
T ss_pred EEeeCCCccchheeeCCcCe--eeccc
Confidence 99999999999999999999 44554
No 32
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-63 Score=498.15 Aligned_cols=521 Identities=24% Similarity=0.344 Sum_probs=402.5
Q ss_pred chhhHHHHHHHHHHHHHHHhccCeeEEE-ECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeC----ceEEEeccCc
Q 044020 2 VTAISDYKQSLQFRDLDREKKKIFIQVT-RDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGH----SLLIDESSLS 76 (563)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~V~-r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~----~l~Vdes~lT 76 (563)
++.++|..++.+++..++..|+...++. |+|.... +++++++||+|++.++++||||.+++..+ .|.|.+-.|+
T Consensus 141 itl~keavdd~~r~~rd~~~Nse~y~~ltr~~~~~~-~Ss~i~vGDvi~v~K~~RVPADmilLrTsd~sg~~FiRTDQLD 219 (1051)
T KOG0210|consen 141 ITLIKEAVDDLKRRRRDRELNSEKYTKLTRDGTRRE-PSSDIKVGDVIIVHKDERVPADMILLRTSDKSGSCFIRTDQLD 219 (1051)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhheeeccCCcccc-cccccccccEEEEecCCcCCcceEEEEccCCCCceEEeccccC
Confidence 6778899999999999999888776555 7776544 99999999999999999999999999754 3799999999
Q ss_pred CCCCccccc----------------------------------------------CCCCeEEecceeecCcEEEEEEEEc
Q 044020 77 GQSEPRYMY----------------------------------------------EENPFLLAGTKVQGGSGKMLVTTVG 110 (563)
Q Consensus 77 Ges~p~~k~----------------------------------------------~~~~~i~~Gt~v~~g~~~~~V~~tg 110 (563)
||++-+.|. .-+|.+.++|.+.+|.+.++|++||
T Consensus 220 GETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~LsventLWanTVvAs~t~~gvVvYTG 299 (1051)
T KOG0210|consen 220 GETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSVENTLWANTVVASGTAIGVVVYTG 299 (1051)
T ss_pred CcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccccceeeeeeeEecCcEEEEEEEec
Confidence 998633321 1245799999999999999999999
Q ss_pred ccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHH
Q 044020 111 MRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVV 190 (563)
Q Consensus 111 ~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (563)
.+|+. ..+...++.+-..++..++.+.+++....++++++....- +-...| ...+..+
T Consensus 300 ~dtRs---vMNts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~~-----------g~~~~w--------yi~~~Rf 357 (1051)
T KOG0210|consen 300 RDTRS---VMNTSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAMK-----------GFGSDW--------YIYIIRF 357 (1051)
T ss_pred ccHHH---HhccCCcccccceeeeecccHHHHHHHHHHHHHHHHHHhh-----------cCCCch--------HHHHHHH
Confidence 99952 3333445677778888999999988777666555433221 111234 3345555
Q ss_pred HHhhhhccCCchHHHHHHHHHHHHHHHhh----CCCeeecchhhhhcCCeeeeecccccccccCceEEEEEEEcCeeeee
Q 044020 191 VTIIDVAVPEGLPLAVTLSLAFAMKKLMN----DGALVRHLSACETMGSASCICTDKTRMLTTNHMVVDKIWIANTISNV 266 (563)
Q Consensus 191 i~ili~~~P~~l~~~~~~~~~~~~~~l~~----~~i~~k~~~~le~l~~v~~i~~DKTGTLT~~~~~v~~i~~~~~~~~~ 266 (563)
+.++...+|..|-+.+.++-..-.....+ .|..+|+....|.||++.++.+|||||||+|+|.+++++.+.-.|..
T Consensus 358 llLFS~IIPISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKTGTLTqNEM~~KKiHLGTv~~s~ 437 (1051)
T KOG0210|consen 358 LLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKTGTLTQNEMEFKKIHLGTVAYSA 437 (1051)
T ss_pred HHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCcCccccchheeeeeeeeeeeccH
Confidence 55556667888877777776554444433 37889999999999999999999999999999999999987666543
Q ss_pred cCCCccc----------------cc--cccccHHHHHHHHHHHHhccCCceeecCCC-CceecCCccHHHHHHHHHHcCC
Q 044020 267 EGNNRKD----------------IL--QSEISERVLDITLQAIFQNTGSKVVKDKDG-KNSILGTPTESAILEFGLRLGG 327 (563)
Q Consensus 267 ~~~~~~~----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~al~~~~~~~~~ 327 (563)
+..+..+ .. .......-..-+..++..||...++.++++ ..+...+|+|.|+++|.+..|.
T Consensus 438 e~~~eV~~~i~s~~~~~~~~~~~~~~~~k~~~s~rv~~~V~alalCHNVTPv~e~~ge~sYQAaSPDEVAiVkwTe~VGl 517 (1051)
T KOG0210|consen 438 ETMDEVSQHIQSLYTPGRNKGKGALSRVKKDMSARVRNAVLALALCHNVTPVFEDDGEVSYQAASPDEVAIVKWTETVGL 517 (1051)
T ss_pred hHHHHHHHHHHHhhCCCcccccccchhhcCcccHHHHHHHHHHHHhccCCcccCCCceEEeecCCCCeEEEEEeeeecce
Confidence 3211100 00 001111222334567788888888888775 4588899999999999988876
Q ss_pred ChHH-------------HhhhceEEEEecCCCCceeEEEEEEcC-CCeEEEEEeCChhHHHhcccccccCCCccccCCHH
Q 044020 328 DFEA-------------QRREFKIVKVEPFNSVRKKMSVLIALP-AGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEE 393 (563)
Q Consensus 328 ~~~~-------------~~~~~~~~~~~~f~~~~~~~sviv~~~-~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~ 393 (563)
.... ...+|++++.|||+|+.|||+++|+++ .++++.|.||+...|-.....
T Consensus 518 ~L~~Rd~~~itL~~~~~~~~~yqIL~vFPFtsEtKRMGIIVr~e~~~evtfylKGAD~VMs~iVq~-------------- 583 (1051)
T KOG0210|consen 518 KLAKRDRHAITLRVPLDDELNYQILQVFPFTSETKRMGIIVRDETTEEVTFYLKGADVVMSGIVQY-------------- 583 (1051)
T ss_pred EEeecccceEEEecCCCcceeEEEEEEeccccccceeeEEEecCCCceEEEEEecchHHHhccccc--------------
Confidence 5432 234899999999999999999999987 588999999997777433321
Q ss_pred HHHHHHHHHHHHHHHHHhHhHhhhhccCCCCCCC------------------------CCCCCCceEEEEecccCCCCcc
Q 044020 394 QFRNITDVINGFASEALRTLCLAFKDLNDSSNEN------------------------NIPDSGYTLIAVVGIKDPVRPG 449 (563)
Q Consensus 394 ~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~------------------------~~~~~~~~~lG~i~~~d~~~~~ 449 (563)
-+++++...+++++|+|++.+|.|.|+..+++. ..+|.|+.++|+.+.+|+++++
T Consensus 584 -NdWleEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVEDkLQ~d 662 (1051)
T KOG0210|consen 584 -NDWLEEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGVEDKLQDD 662 (1051)
T ss_pred -chhhhhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccChHHHHhhh
Confidence 146677889999999999999999999876221 2678999999999999999999
Q ss_pred hHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCC----------------------------CceeechhhhcCC
Q 044020 450 VKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSD----------------------------GEAVEGPEFRNMS 501 (563)
Q Consensus 450 ~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~----------------------------~~~~~g~~~~~~~ 501 (563)
++.+++.|+++||++||+|||..++|..+|+..++.+.+ ..+++|+.++-..
T Consensus 663 Vk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~Sl~~cl 742 (1051)
T KOG0210|consen 663 VKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVIDGESLEFCL 742 (1051)
T ss_pred hHhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEcCchHHHHH
Confidence 999999999999999999999999999999999987632 3456665443221
Q ss_pred C----C----CCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecCCCC
Q 044020 502 P----A----DIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGIAGT 562 (563)
Q Consensus 502 ~----~----~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~~~~ 562 (563)
+ + ..-....+.||++|.||+++++.+|++.|..|++||||.||++|+++||+|| |+-|.
T Consensus 743 ~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq~A~~Gi--GI~gk 809 (1051)
T KOG0210|consen 743 KYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQAADVGI--GIVGK 809 (1051)
T ss_pred HHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCCccchheeecccce--eeecc
Confidence 1 1 1223456899999999999999999988999999999999999999999999 44443
No 33
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-57 Score=442.18 Aligned_cols=453 Identities=25% Similarity=0.340 Sum_probs=356.8
Q ss_pred hhhHHHHHHHHHHHHHHHhccCeeEEEEC-CEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCc
Q 044020 3 TAISDYKQSLQFRDLDREKKKIFIQVTRD-GQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEP 81 (563)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~~V~r~-g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p 81 (563)
+++.|-+-+.|...|.+.......+++++ |.++.+++.+|+.||+|.|+.||+||+||.+++|.+ +||||++||||.|
T Consensus 83 Ea~AEGrgKAqAdsLr~~~~~~~A~~l~~~g~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~a-sVdESAITGESaP 161 (681)
T COG2216 83 EAVAEGRGKAQADSLRKTKTETIARLLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVA-SVDESAITGESAP 161 (681)
T ss_pred HHHHcccchHHHHHHHHHHHHHHHHHhcCCCCeeeccccccccCCEEEEecCCCccCCCeEEeeee-ecchhhccCCCcc
Confidence 34455555666666766655556777776 899999999999999999999999999999999988 9999999999999
Q ss_pred ccccCCCCe--EEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044020 82 RYMYEENPF--LLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVLEFLVLI 159 (563)
Q Consensus 82 ~~k~~~~~~--i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 159 (563)
+.|..|+++ |-.||.+++.+++++++....+|++.|+..+++.++.+++|-+-.+..+..-+. ++|-+++.-++.
T Consensus 162 ViresGgD~ssVtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~LT---liFL~~~~Tl~p 238 (681)
T COG2216 162 VIRESGGDFSSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNEIALTILLSGLT---LIFLLAVATLYP 238 (681)
T ss_pred eeeccCCCcccccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhHHHHHHHHHHHH---HHHHHHHHhhhh
Confidence 999877432 889999999999999999999999999999999999999998865543222111 111111111111
Q ss_pred HHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhhcCCeeee
Q 044020 160 GRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACETMGSASCI 239 (563)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~l~~v~~i 239 (563)
+..|.. .. .-.+...+.++++.+|..+.-.++.-=..++.|+.+.|++-++.++.|..|.+|++
T Consensus 239 ----~a~y~~--------g~----~~~i~~LiALlV~LIPTTIGgLLsAIGIAGMdRv~~~NViA~SGRAVEaaGDvdtl 302 (681)
T COG2216 239 ----FAIYSG--------GG----AASVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVTQFNVIATSGRAVEAAGDVDTL 302 (681)
T ss_pred ----HHHHcC--------CC----CcCHHHHHHHHHHHhcccHHHHHHHhhhhhhhHhhhhceeecCcchhhhcCCccEE
Confidence 111100 00 01244567788888999888777777778999999999999999999999999999
Q ss_pred ecccccccccCceEEEEEEEcCeeeeecCCCccccccccccHHHHHHHHHHHHhccCCceeecCCCCceecCCccHHHHH
Q 044020 240 CTDKTRMLTTNHMVVDKIWIANTISNVEGNNRKDILQSEISERVLDITLQAIFQNTGSKVVKDKDGKNSILGTPTESAIL 319 (563)
Q Consensus 240 ~~DKTGTLT~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~ 319 (563)
+.|||||+|.|+-.-+++++.+... .+++.+....+ +-. -..|..++++
T Consensus 303 iLDKTGTIT~GnR~A~~f~p~~gv~---------------~~~la~aa~ls----Sl~------------DeTpEGrSIV 351 (681)
T COG2216 303 LLDKTGTITLGNRQASEFIPVPGVS---------------EEELADAAQLA----SLA------------DETPEGRSIV 351 (681)
T ss_pred EecccCceeecchhhhheecCCCCC---------------HHHHHHHHHHh----hhc------------cCCCCcccHH
Confidence 9999999999998888887766541 12222221111 111 1278889999
Q ss_pred HHHHHcCCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCChhHHHhcccccccCCCccccCCHHHHHHHH
Q 044020 320 EFGLRLGGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGASEIVLSMCDKVVSDNGEPVPLSEEQFRNIT 399 (563)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~ 399 (563)
+++++.+.+.+.....- ....+||+.+.|++.+-... + .-+-||+.+.+....+. .+| . ..+.+.
T Consensus 352 ~LA~~~~~~~~~~~~~~-~~~fvpFtA~TRmSGvd~~~--~--~~irKGA~dai~~~v~~---~~g-~------~p~~l~ 416 (681)
T COG2216 352 ELAKKLGIELREDDLQS-HAEFVPFTAQTRMSGVDLPG--G--REIRKGAVDAIRRYVRE---RGG-H------IPEDLD 416 (681)
T ss_pred HHHHHhccCCCcccccc-cceeeecceecccccccCCC--C--ceeecccHHHHHHHHHh---cCC-C------CCHHHH
Confidence 99999886554332211 34678999988877665432 2 56679999999877652 111 1 124567
Q ss_pred HHHHHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q 044020 400 DVINGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIA 479 (563)
Q Consensus 400 ~~~~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a 479 (563)
...++.++.|-..++++ .|..++|.+.++|-++|+.+|-+.+||+.||+.+|+|||++.+|..+|
T Consensus 417 ~~~~~vs~~GGTPL~V~---------------~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA 481 (681)
T COG2216 417 AAVDEVSRLGGTPLVVV---------------ENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA 481 (681)
T ss_pred HHHHHHHhcCCCceEEE---------------ECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHH
Confidence 78888899999998887 456999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeecC
Q 044020 480 KECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMGI 559 (563)
Q Consensus 480 ~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg~ 559 (563)
++.|++. +.++++|++|.++++.-|.+ |+-|+|+|||.||.|+|.+||||+||.
T Consensus 482 ~EAGVDd------------------------fiAeatPEdK~~~I~~eQ~~-grlVAMtGDGTNDAPALAqAdVg~AMN- 535 (681)
T COG2216 482 AEAGVDD------------------------FIAEATPEDKLALIRQEQAE-GRLVAMTGDGTNDAPALAQADVGVAMN- 535 (681)
T ss_pred HHhCchh------------------------hhhcCChHHHHHHHHHHHhc-CcEEEEcCCCCCcchhhhhcchhhhhc-
Confidence 9999997 99999999999999999999 999999999999999999999999998
Q ss_pred CCC
Q 044020 560 AGT 562 (563)
Q Consensus 560 ~~~ 562 (563)
+|+
T Consensus 536 sGT 538 (681)
T COG2216 536 SGT 538 (681)
T ss_pred ccc
Confidence 876
No 34
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=1.8e-35 Score=283.23 Aligned_cols=213 Identities=32% Similarity=0.520 Sum_probs=174.5
Q ss_pred hhhHHHHHHHHHHHHHHHh---ccCe-eEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEe-eCceEEEeccCcC
Q 044020 3 TAISDYKQSLQFRDLDREK---KKIF-IQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFIS-GHSLLIDESSLSG 77 (563)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~---~~~~-~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~-g~~l~Vdes~lTG 77 (563)
+.+.+++++++.++..+.+ .+.+ ++|.|||+++.+++++|+|||||.+++||++||||+|++ |. ++||||.+||
T Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~~g~-~~vd~s~ltG 87 (230)
T PF00122_consen 9 SNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLESGS-AYVDESALTG 87 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEESSE-EEEECHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhccceeeeecccccccccCccceeccc-cccccccccc
Confidence 3444555555544444433 2334 999999999999999999999999999999999999999 65 5999999999
Q ss_pred CCCcccccC----CCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 044020 78 QSEPRYMYE----ENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIELFFSVL 153 (563)
Q Consensus 78 es~p~~k~~----~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (563)
|+.|+.|.. .++++|+||.+.+|++.++|++||.+|..+++.+...+.+.+++++++.++++..++.++.++++++
T Consensus 88 es~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (230)
T PF00122_consen 88 ESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIAKILIIIILAIAIL 167 (230)
T ss_dssp BSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHHHHHHhcccccchh
Confidence 999999971 4567999999999999999999999999999999998888888999999999999998887776666
Q ss_pred HHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHhhCCCeeecchhhhh
Q 044020 154 EFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMKKLMNDGALVRHLSACET 232 (563)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~~l~~~~i~~k~~~~le~ 232 (563)
++++++.. ....++...+..++++++.+||++|++++++++..+.++|.++|+++|+++++|.
T Consensus 168 ~~~~~~~~----------------~~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~~i~v~~~~a~E~ 230 (230)
T PF00122_consen 168 VFIIWFFN----------------DSGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKNGIIVKNLSALEA 230 (230)
T ss_dssp HHHHCHTG----------------STTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHTTEEESSTTHHHH
T ss_pred hhccceec----------------ccccccccccccccceeeeecccceeehHHHHHHHHHHHHHHCCEEEeCcccccC
Confidence 66443221 0112456678888999999999999999999999999999999999999999984
No 35
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.88 E-value=5.5e-23 Score=194.92 Aligned_cols=97 Identities=45% Similarity=0.679 Sum_probs=90.9
Q ss_pred CceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEE
Q 044020 433 GYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVM 512 (563)
Q Consensus 433 ~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~ 512 (563)
++.++|.+.+.|++++++.++|+.|+++|++++|+|||+..++..+++++||.. ..+|
T Consensus 115 ~~~~~~~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~----------------------~~v~ 172 (215)
T PF00702_consen 115 NLIFLGLFGLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD----------------------SIVF 172 (215)
T ss_dssp SHEEEEEEEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS----------------------EEEE
T ss_pred cCeEEEEEeecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc----------------------cccc
Confidence 569999999999999999999999999999999999999999999999999953 2389
Q ss_pred Eec--ChhhH--HHHHHHHHHhcCCEEEEEcCCccCHHHHhhCC
Q 044020 513 ARS--LPSDK--HTLVTQLRNTFGEVVAVTGDGTNDASALHEAD 552 (563)
Q Consensus 513 ~~~--~p~~K--~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~ 552 (563)
++. +|++| ..+++.|+.. +++|+|+|||.||++|+++||
T Consensus 173 a~~~~kP~~k~~~~~i~~l~~~-~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 173 ARVIGKPEPKIFLRIIKELQVK-PGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp ESHETTTHHHHHHHHHHHHTCT-GGGEEEEESSGGHHHHHHHSS
T ss_pred ccccccccchhHHHHHHHHhcC-CCEEEEEccCHHHHHHHHhCc
Confidence 999 99999 9999999966 669999999999999999997
No 36
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.52 E-value=6.4e-14 Score=113.56 Aligned_cols=100 Identities=25% Similarity=0.392 Sum_probs=93.7
Q ss_pred ceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEE
Q 044020 434 YTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMA 513 (563)
Q Consensus 434 ~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 513 (563)
....++|+---++-++++++|++|++. ++++++|||...+....|+-.|++... +|+
T Consensus 19 ~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~r----------------------v~a 75 (152)
T COG4087 19 GKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVER----------------------VFA 75 (152)
T ss_pred ceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceee----------------------eec
Confidence 467899999999999999999999999 999999999999999999999987643 899
Q ss_pred ecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEee
Q 044020 514 RSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAM 557 (563)
Q Consensus 514 ~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiam 557 (563)
...|+.|.++++.|+.. ++.|+|+|||.||.+||+.||+||+.
T Consensus 76 ~a~~e~K~~ii~eLkk~-~~k~vmVGnGaND~laLr~ADlGI~t 118 (152)
T COG4087 76 GADPEMKAKIIRELKKR-YEKVVMVGNGANDILALREADLGICT 118 (152)
T ss_pred ccCHHHHHHHHHHhcCC-CcEEEEecCCcchHHHhhhcccceEE
Confidence 99999999999999987 89999999999999999999999875
No 37
>PF13246 Hydrolase_like2: Putative hydrolase of sodium-potassium ATPase alpha subunit
Probab=99.51 E-value=6.7e-14 Score=111.83 Aligned_cols=85 Identities=38% Similarity=0.667 Sum_probs=69.3
Q ss_pred ccCCceeecCCCC-ceecCCccHHHHHHHHHHc--CCChHHHhhhceEEEEecCCCCceeEEEEEEcCCCeEEEEEeCCh
Q 044020 294 NTGSKVVKDKDGK-NSILGTPTESAILEFGLRL--GGDFEAQRREFKIVKVEPFNSVRKKMSVLIALPAGGMRAFCKGAS 370 (563)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~~~~e~al~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~~~~sviv~~~~~~~~~~~kG~~ 370 (563)
|+.+.+..+.+.. ....|+|+|.||+.++.+. +.+....+..+++++.+||+|+||+|+++++ .++.+.+++||+|
T Consensus 3 Cn~a~~~~~~~~~~~~~~G~ptE~ALl~~~~~~g~~~~~~~~~~~~~~~~~~pF~S~rK~msvv~~-~~~~~~~~~KGA~ 81 (91)
T PF13246_consen 3 CNDAEIEYDDESKTEEIIGDPTEKALLRFAKKLGVGIDIKEIRSKYKIVAEIPFDSERKRMSVVVR-NDGKYILYVKGAP 81 (91)
T ss_pred ccccEeecCCCCccccccCCcCHHHHHHHHHHcCCCCcHHHHHhhcceeEEEccCcccceeEEEEe-CCCEEEEEcCCCh
Confidence 4444443333322 2388999999999999999 5577889999999999999999999999999 3345777999999
Q ss_pred hHHHhcccc
Q 044020 371 EIVLSMCDK 379 (563)
Q Consensus 371 ~~il~~c~~ 379 (563)
|.|+++|++
T Consensus 82 e~il~~Ct~ 90 (91)
T PF13246_consen 82 EVILDRCTH 90 (91)
T ss_pred HHHHHhcCC
Confidence 999999985
No 38
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.20 E-value=5.4e-11 Score=116.83 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=39.7
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
.++.+.++++|++|+++|++++++|||+...+..+++++++.
T Consensus 19 ~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 19 HTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred CccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 469999999999999999999999999999999999999975
No 39
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.19 E-value=7.9e-11 Score=115.21 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=43.8
Q ss_pred EEecccCC-CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 438 AVVGIKDP-VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 438 G~i~~~d~-~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
|++.-.+. +.+.++++|++++++|++|+++|||+...+..+.+++++..
T Consensus 12 GTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 12 GTLLDSNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred CCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 44444544 99999999999999999999999999999999999999985
No 40
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.18 E-value=5.3e-11 Score=116.92 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=40.3
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
..+.+.++++|++|+++|++++++|||+...+..+++++++..
T Consensus 18 ~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 18 HHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDA 60 (272)
T ss_pred CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCC
Confidence 3599999999999999999999999999999999999999864
No 41
>PRK10976 putative hydrolase; Provisional
Probab=99.18 E-value=6.7e-11 Score=115.84 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=40.1
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
..+.+.++++|++++++|++++++|||+...+..+.+++++..
T Consensus 18 ~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (266)
T PRK10976 18 HTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKS 60 (266)
T ss_pred CcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 3589999999999999999999999999999999999999864
No 42
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.11 E-value=2.4e-10 Score=109.33 Aligned_cols=125 Identities=27% Similarity=0.366 Sum_probs=85.5
Q ss_pred EEecccCC-CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC-----CCceee---chh------------
Q 044020 438 AVVGIKDP-VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTS-----DGEAVE---GPE------------ 496 (563)
Q Consensus 438 G~i~~~d~-~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~-----~~~~~~---g~~------------ 496 (563)
|++.-.+. +.+.+.++|++++++|++++++|||+...+..+++.+|+..+ ...+.. +..
T Consensus 12 GTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~ 91 (230)
T PRK01158 12 GTITDKDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKRIFLGDIEECEKA 91 (230)
T ss_pred CCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEEEcCCCCEEEEcchHHHHHH
Confidence 34433444 889999999999999999999999999999999999998642 111111 100
Q ss_pred ---hh-c----------CCCC----------------------CCCcceeE-----EEecChh--hHHHHHHHHHHhcC-
Q 044020 497 ---FR-N----------MSPA----------------------DIIPKLQV-----MARSLPS--DKHTLVTQLRNTFG- 532 (563)
Q Consensus 497 ---~~-~----------~~~~----------------------~~~~~~~v-----~~~~~p~--~K~~~v~~l~~~~g- 532 (563)
+. . .... .......+ +.+..|. .|...++.+.+++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i 171 (230)
T PRK01158 92 YSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKGTGLKKLAELMGI 171 (230)
T ss_pred HHHHHHhccccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChHHHHHHHHHHhCC
Confidence 00 0 0000 00000111 1233333 48888888887765
Q ss_pred --CEEEEEcCCccCHHHHhhCCceEeecCCCCC
Q 044020 533 --EVVAVTGDGTNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 533 --~~v~~iGDg~ND~~~l~~a~vgiamg~~~~~ 563 (563)
+.++++||+.||++|++.|++|+||| ||.+
T Consensus 172 ~~~~~i~~GD~~NDi~m~~~ag~~vam~-Na~~ 203 (230)
T PRK01158 172 DPEEVAAIGDSENDLEMFEVAGFGVAVA-NADE 203 (230)
T ss_pred CHHHEEEECCchhhHHHHHhcCceEEec-CccH
Confidence 57999999999999999999999999 8863
No 43
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.09 E-value=3.1e-10 Score=107.34 Aligned_cols=118 Identities=27% Similarity=0.373 Sum_probs=82.9
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC-----CCceeech-hh--hc-----------------
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTS-----DGEAVEGP-EF--RN----------------- 499 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~-----~~~~~~g~-~~--~~----------------- 499 (563)
++.+.+.++|++|+++|++++++|||+...+..+++.+++..+ ...++... .+ ..
T Consensus 18 ~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
T TIGR01487 18 MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKEDIFLANMEEEWFLDEEKKKRFPR 97 (215)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCcEEEecccchhhHHHhhhhhhhh
Confidence 4899999999999999999999999999999999999998642 11111100 00 00
Q ss_pred --CCC---C----------------CCCc--cee-----EEEecCh--hhHHHHHHHHHHhcC---CEEEEEcCCccCHH
Q 044020 500 --MSP---A----------------DIIP--KLQ-----VMARSLP--SDKHTLVTQLRNTFG---EVVAVTGDGTNDAS 546 (563)
Q Consensus 500 --~~~---~----------------~~~~--~~~-----v~~~~~p--~~K~~~v~~l~~~~g---~~v~~iGDg~ND~~ 546 (563)
... . .... ... .+.++.| ..|...++.+.+++| +.++++||+.||++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ 177 (215)
T TIGR01487 98 DRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDID 177 (215)
T ss_pred hhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHH
Confidence 000 0 0000 000 1123333 468889999888765 46999999999999
Q ss_pred HHhhCCceEeecCCCCC
Q 044020 547 ALHEADIGLAMGIAGTE 563 (563)
Q Consensus 547 ~l~~a~vgiamg~~~~~ 563 (563)
|++.|++|+||+ ||.+
T Consensus 178 ml~~ag~~vam~-na~~ 193 (215)
T TIGR01487 178 LFRVVGFKVAVA-NADD 193 (215)
T ss_pred HHHhCCCeEEcC-CccH
Confidence 999999999999 8753
No 44
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=2.4e-08 Score=102.38 Aligned_cols=188 Identities=17% Similarity=0.259 Sum_probs=140.3
Q ss_pred CChhHHHhcccccccCCCccccCCHHHHHHHHHHHHHHHHHHHhHhHhhhhccCCCC---------------C-------
Q 044020 368 GASEIVLSMCDKVVSDNGEPVPLSEEQFRNITDVINGFASEALRTLCLAFKDLNDSS---------------N------- 425 (563)
Q Consensus 368 G~~~~il~~c~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~---------------~------- 425 (563)
|-...+...|+++|+. -...|++...+.++.+.+.+..-.|+ +++||||+..... .
T Consensus 698 g~ad~~~eACTdfWdG-adi~PlSg~dkkkV~DFY~RaclsG~-C~AfaYkP~~caLasqL~GKciEl~~~p~~SkI~T~ 775 (1354)
T KOG4383|consen 698 GFADFFEEACTDFWDG-ADIIPLSGRDKKKVKDFYLRACLSGH-CLAFAYKPCFCALASQLAGKCIELPLNPEHSKIETA 775 (1354)
T ss_pred cHHHHHHHHhhhhcCC-ceeeecCcchHHHHHHHHHHHhhccc-chheecccHHHHHHHHhCCceEEeccCcccchhhhh
Confidence 4456678999999963 46789999999999999999888885 8999998854321 0
Q ss_pred ------C-------C------------------CCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHH
Q 044020 426 ------E-------N------------------NIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINT 474 (563)
Q Consensus 426 ------~-------~------------------~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~ 474 (563)
. . .....+..|.|++..+.+.+++....|+.|-++.|+++..|-.+...
T Consensus 776 celp~sipikqnar~S~~e~Degige~l~~e~c~Qa~sGQIf~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELk 855 (1354)
T KOG4383|consen 776 CELPHSIPIKQNARESFDEIDEGIGERLADEACDQAFSGQIFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELK 855 (1354)
T ss_pred ccCCCCCcchhhhhhhhhhhccccceeccHhHHHHHhccchhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHH
Confidence 0 0 12234567999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCcee------------------------------------echh---------------hhcCCCC
Q 044020 475 ARAIAKECGILTSDGEAV------------------------------------EGPE---------------FRNMSPA 503 (563)
Q Consensus 475 a~~~a~~lgi~~~~~~~~------------------------------------~g~~---------------~~~~~~~ 503 (563)
.+-+|+++||.......+ +..+ +..++..
T Consensus 856 SkVFAEKlGiEaGWNCHISLa~~~d~Pg~e~~pa~~q~a~qkpSlhddlnqia~ddaeg~lL~~Eeg~~dliSfq~~dsd 935 (1354)
T KOG4383|consen 856 SKVFAEKLGIEAGWNCHISLAEEEDAPGREAGPAHEQFAAQKPSLHDDLNQIALDDAEGELLDCEEGARDLISFQKMDSD 935 (1354)
T ss_pred HHHHHHHhccccccceeEEeccCCCCCcccCCCCChhhhccCcchhHHHHHhhhcccccceeehhhcccCCccccccccc
Confidence 999999999976211000 0000 0000000
Q ss_pred ------------------------CCCcc----eeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCcc--CHHHHhhCCc
Q 044020 504 ------------------------DIIPK----LQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTN--DASALHEADI 553 (563)
Q Consensus 504 ------------------------~~~~~----~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~N--D~~~l~~a~v 553 (563)
+.+.+ +..|..++|+...++++.+|+. |++++++|...| ....+-+||+
T Consensus 936 i~kf~ed~N~AkLPrGihnVRPHL~~iDNVPLLV~LFTDcnpeamcEMIeIMQE~-GEVtcclGS~aN~rNSciflkadI 1014 (1354)
T KOG4383|consen 936 IAKFAEDPNIAKLPRGIHNVRPHLDEIDNVPLLVGLFTDCNPEAMCEMIEIMQEN-GEVTCCLGSCANARNSCIFLKADI 1014 (1354)
T ss_pred hhhhcCCCchhhcCcchhhcCcccccccCcceeeeeccCCCHHHHHHHHHHHHHc-CcEEEEeccccccccceEEEccce
Confidence 01111 1258889999999999999998 999999999877 3445678899
Q ss_pred eEeec
Q 044020 554 GLAMG 558 (563)
Q Consensus 554 giamg 558 (563)
+||+-
T Consensus 1015 SialD 1019 (1354)
T KOG4383|consen 1015 SIALD 1019 (1354)
T ss_pred eEEec
Confidence 99874
No 45
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.05 E-value=1.4e-09 Score=106.62 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=38.5
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
.+.+.++++|++|+++|++++++|||+...+..+++++|+.
T Consensus 24 ~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 24 YDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred cCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 46688999999999999999999999999999999999985
No 46
>PLN02887 hydrolase family protein
Probab=99.05 E-value=4.5e-10 Score=119.29 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=39.3
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
..+.+.++++|++++++|++|+++|||+...+..+.+++++.
T Consensus 324 ~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 324 SQISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred CccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 459999999999999999999999999999999999999874
No 47
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.04 E-value=1.4e-09 Score=101.48 Aligned_cols=101 Identities=25% Similarity=0.293 Sum_probs=83.6
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCc-------eeechhhhcCCCCCCCcceeEEEecC
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGE-------AVEGPEFRNMSPADIIPKLQVMARSL 516 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~-------~~~g~~~~~~~~~~~~~~~~v~~~~~ 516 (563)
.++.|++.+.++.++++|.+|+++||-...-+.++++++|++..-.. +++|.. +-..+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v--------------~g~~~~ 141 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRV--------------VGPICD 141 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEecee--------------eeeecC
Confidence 67999999999999999999999999999999999999999874222 233321 222345
Q ss_pred hhhHHHHHHHHHHhcC---CEEEEEcCCccCHHHHhhCCceEeec
Q 044020 517 PSDKHTLVTQLRNTFG---EVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 517 p~~K~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
.+.|...++.+.+.+| +.+.++|||.||+|||+.||.++|+.
T Consensus 142 ~~~K~~~l~~~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n 186 (212)
T COG0560 142 GEGKAKALRELAAELGIPLEETVAYGDSANDLPMLEAAGLPIAVN 186 (212)
T ss_pred cchHHHHHHHHHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeC
Confidence 6789999988887666 46999999999999999999999985
No 48
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.03 E-value=6.8e-10 Score=105.86 Aligned_cols=117 Identities=26% Similarity=0.370 Sum_probs=82.5
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhh-----------cCC------------
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFR-----------NMS------------ 501 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~-----------~~~------------ 501 (563)
.+.+.+.++|++++++|++++++|||+...+..+++.+|+..+ .+..+|..+. .+.
T Consensus 15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~-~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (225)
T TIGR01482 15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDP-VIAENGGEISYNEGMDDIFLAYLEEEWFLDIVIAKT 93 (225)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCe-EEEecCcEEEeCCCCceEEecccCHHHHHHHHHhcc
Confidence 4889999999999999999999999999999999999996431 1111111000 000
Q ss_pred -----------CC--------------------CCCccee-----EEEecCh--hhHHHHHHHHHHhcC---CEEEEEcC
Q 044020 502 -----------PA--------------------DIIPKLQ-----VMARSLP--SDKHTLVTQLRNTFG---EVVAVTGD 540 (563)
Q Consensus 502 -----------~~--------------------~~~~~~~-----v~~~~~p--~~K~~~v~~l~~~~g---~~v~~iGD 540 (563)
.. ....... .+.+..| ..|...++.+.+++| +.++++||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD 173 (225)
T TIGR01482 94 FPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGD 173 (225)
T ss_pred cchhhhccccccccceEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECC
Confidence 00 0000000 1122333 368888999888766 68999999
Q ss_pred CccCHHHHhhCCceEeecCCCCC
Q 044020 541 GTNDASALHEADIGLAMGIAGTE 563 (563)
Q Consensus 541 g~ND~~~l~~a~vgiamg~~~~~ 563 (563)
+.||++||+.|++|+||| ||.+
T Consensus 174 ~~NDi~m~~~ag~~vam~-Na~~ 195 (225)
T TIGR01482 174 SENDIDLFEVPGFGVAVA-NAQP 195 (225)
T ss_pred CHhhHHHHHhcCceEEcC-ChhH
Confidence 999999999999999999 8753
No 49
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.03 E-value=6.2e-10 Score=107.90 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=40.5
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
...+.+.++++|++|+++|++++++|||++..+..+.+++++.
T Consensus 13 ~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 13 DGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp TSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred CCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 4558899999999999999999999999999999999999987
No 50
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.00 E-value=1.5e-09 Score=100.92 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=78.9
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC--ceeec-hhhhcCCCCCCCcceeEEEecChhhHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG--EAVEG-PEFRNMSPADIIPKLQVMARSLPSDKH 521 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~--~~~~g-~~~~~~~~~~~~~~~~v~~~~~p~~K~ 521 (563)
++.|++.+.|+.+++.| +++++||-....+.++++++|+..... ..+.+ ..+ ... . ...++.|.
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~--------tG~--~--~~~~~~K~ 134 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRV--------VGY--Q--LRQKDPKR 134 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCee--------ECe--e--ecCcchHH
Confidence 58999999999999985 999999999999999999999975221 11111 000 000 0 13467899
Q ss_pred HHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 522 TLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
..++.+++. +..+.++|||.||++|++.||+||+|.
T Consensus 135 ~~l~~l~~~-~~~~v~vGDs~nDl~ml~~Ag~~ia~~ 170 (203)
T TIGR02137 135 QSVIAFKSL-YYRVIAAGDSYNDTTMLSEAHAGILFH 170 (203)
T ss_pred HHHHHHHhh-CCCEEEEeCCHHHHHHHHhCCCCEEec
Confidence 999999776 878999999999999999999999996
No 51
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.97 E-value=2.2e-09 Score=105.59 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=39.7
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
.+.+.++++|++++++|++++++|||+...+..+++++++..
T Consensus 20 ~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 20 TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDT 61 (272)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 589999999999999999999999999999999999999864
No 52
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.92 E-value=4.2e-09 Score=104.59 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=77.9
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC---ceeechhhhcCCCCCCCcceeEEE-ecChhhH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG---EAVEGPEFRNMSPADIIPKLQVMA-RSLPSDK 520 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~---~~~~g~~~~~~~~~~~~~~~~v~~-~~~p~~K 520 (563)
++.|++.+.++.|++.|+++.++||.....+..+.+++|++.... .+..|.... .+.. -+....|
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg-----------~v~g~iv~~k~K 249 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTG-----------NVLGDIVDAQYK 249 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEe-----------EecCccCCcccH
Confidence 489999999999999999999999999888899999999864110 011110000 0000 1234679
Q ss_pred HHHHHHHHHhcC---CEEEEEcCCccCHHHHhhCCceEee
Q 044020 521 HTLVTQLRNTFG---EVVAVTGDGTNDASALHEADIGLAM 557 (563)
Q Consensus 521 ~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a~vgiam 557 (563)
.+.++.+.+++| +.++++|||.||++|++.||+||||
T Consensus 250 ~~~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~ 289 (322)
T PRK11133 250 ADTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY 289 (322)
T ss_pred HHHHHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe
Confidence 999999887765 6899999999999999999999999
No 53
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.90 E-value=6.3e-09 Score=92.50 Aligned_cols=95 Identities=21% Similarity=0.333 Sum_probs=74.9
Q ss_pred eEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEe
Q 044020 435 TLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMAR 514 (563)
Q Consensus 435 ~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~ 514 (563)
..++.+.+.|. .+|++|+++|+++.++||++...+..+++++|+.. .|..
T Consensus 24 ~~~~~~~~~~~------~~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~------------------------~~~~ 73 (154)
T TIGR01670 24 EEIKAFNVRDG------YGIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH------------------------LYQG 73 (154)
T ss_pred cEEEEEechhH------HHHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE------------------------EEec
Confidence 44555444433 28999999999999999999999999999999975 4443
Q ss_pred cChhhHHHHHHHHHHhcC---CEEEEEcCCccCHHHHhhCCceEeecCCCC
Q 044020 515 SLPSDKHTLVTQLRNTFG---EVVAVTGDGTNDASALHEADIGLAMGIAGT 562 (563)
Q Consensus 515 ~~p~~K~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a~vgiamg~~~~ 562 (563)
. ..|...++.+.+++| +.++++||+.||++|++.|+++++|. ++.
T Consensus 74 ~--~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~v~-~~~ 121 (154)
T TIGR01670 74 Q--SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLSVAVA-DAH 121 (154)
T ss_pred c--cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEecC-CcC
Confidence 2 346666666655444 68999999999999999999999998 664
No 54
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.89 E-value=2.9e-09 Score=95.36 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=69.0
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhc
Q 044020 452 EAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTF 531 (563)
Q Consensus 452 ~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~ 531 (563)
.+|+.|+++|+++.++|+.+...+...++.+|+.. +|.... .|...++.+.+++
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~------------------------~f~~~k--pkp~~~~~~~~~l 94 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKR------------------------FHEGIK--KKTEPYAQMLEEM 94 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcE------------------------EEecCC--CCHHHHHHHHHHc
Confidence 57999999999999999999999999999999975 554432 3334444444443
Q ss_pred C---CEEEEEcCCccCHHHHhhCCceEeecCCCC
Q 044020 532 G---EVVAVTGDGTNDASALHEADIGLAMGIAGT 562 (563)
Q Consensus 532 g---~~v~~iGDg~ND~~~l~~a~vgiamg~~~~ 562 (563)
+ +.+++|||+.||++|++.|++++||+ ||.
T Consensus 95 ~~~~~ev~~iGD~~nDi~~~~~ag~~~am~-nA~ 127 (169)
T TIGR02726 95 NISDAEVCYVGDDLVDLSMMKRVGLAVAVG-DAV 127 (169)
T ss_pred CcCHHHEEEECCCHHHHHHHHHCCCeEECc-Cch
Confidence 3 68999999999999999999999999 774
No 55
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.88 E-value=1.6e-08 Score=98.33 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=40.6
Q ss_pred EEecccCC-CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 438 AVVGIKDP-VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 438 G~i~~~d~-~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
|++.-.+. ..+.++++|++|+++|++++++|||+...+..+++++|+..
T Consensus 8 GTll~~~~~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR01486 8 GTLLDPHGYDWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLED 57 (256)
T ss_pred CCCcCCCCcCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCC
Confidence 33333343 45579999999999999999999999999999999999853
No 56
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.87 E-value=4.1e-09 Score=89.14 Aligned_cols=84 Identities=25% Similarity=0.370 Sum_probs=74.1
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhc
Q 044020 452 EAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTF 531 (563)
Q Consensus 452 ~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~ 531 (563)
-.|+.+.+.|+++.++|||....+..-|+.||+.. +|.. ..+|....+.|.+++
T Consensus 42 ~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~------------------------~~qG--~~dK~~a~~~L~~~~ 95 (170)
T COG1778 42 HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKH------------------------LYQG--ISDKLAAFEELLKKL 95 (170)
T ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCce------------------------eeec--hHhHHHHHHHHHHHh
Confidence 35899999999999999999999999999999986 6654 478888888887765
Q ss_pred C---CEEEEEcCCccCHHHHhhCCceEeecCCCC
Q 044020 532 G---EVVAVTGDGTNDASALHEADIGLAMGIAGT 562 (563)
Q Consensus 532 g---~~v~~iGDg~ND~~~l~~a~vgiamg~~~~ 562 (563)
+ +.|+++||..||.|+|+.+++++|+. +|.
T Consensus 96 ~l~~e~~ayiGDD~~Dlpvm~~vGls~a~~-dAh 128 (170)
T COG1778 96 NLDPEEVAYVGDDLVDLPVMEKVGLSVAVA-DAH 128 (170)
T ss_pred CCCHHHhhhhcCccccHHHHHHcCCccccc-ccC
Confidence 5 78999999999999999999999998 663
No 57
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.83 E-value=2.4e-08 Score=98.02 Aligned_cols=44 Identities=23% Similarity=0.214 Sum_probs=40.2
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
...+.+.++++|++|+++|++++++|||+...+..+++++|+..
T Consensus 19 ~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~ 62 (273)
T PRK00192 19 HTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLED 62 (273)
T ss_pred CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC
Confidence 34577889999999999999999999999999999999999864
No 58
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.82 E-value=1.3e-08 Score=98.95 Aligned_cols=43 Identities=35% Similarity=0.491 Sum_probs=39.9
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
.++.+.+.++|++|+++|++++++|||+...+..+.+++++..
T Consensus 15 ~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 15 HTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT 57 (256)
T ss_pred CccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 3588999999999999999999999999999999999999863
No 59
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.75 E-value=2.3e-08 Score=91.60 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=70.5
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhc
Q 044020 452 EAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTF 531 (563)
Q Consensus 452 ~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~ 531 (563)
.+|+.|+++|+++.++||++...+..+++++|+.. +|.. .+.|...++.+.+++
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~------------------------~f~g--~~~k~~~l~~~~~~~ 108 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITH------------------------LYQG--QSNKLIAFSDLLEKL 108 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCce------------------------eecC--CCcHHHHHHHHHHHh
Confidence 58999999999999999999999999999999875 4442 345777777766654
Q ss_pred C---CEEEEEcCCccCHHHHhhCCceEeecCCC
Q 044020 532 G---EVVAVTGDGTNDASALHEADIGLAMGIAG 561 (563)
Q Consensus 532 g---~~v~~iGDg~ND~~~l~~a~vgiamg~~~ 561 (563)
| +++++|||+.||++|++.|+++++++ ++
T Consensus 109 gl~~~ev~~VGDs~~D~~~a~~aG~~~~v~-~~ 140 (183)
T PRK09484 109 AIAPEQVAYIGDDLIDWPVMEKVGLSVAVA-DA 140 (183)
T ss_pred CCCHHHEEEECCCHHHHHHHHHCCCeEecC-Ch
Confidence 5 68999999999999999999999987 54
No 60
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.69 E-value=4e-08 Score=93.14 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=40.0
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
.+...+.++++|++|+++|++++++|||++..+..+++++|+..
T Consensus 13 ~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 13 PGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEP 56 (225)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 45667789999999999999999999999999999999999854
No 61
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.68 E-value=1.8e-07 Score=88.87 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=37.0
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
+.+.++++|++|+++|++++++|||+...+..+++.+|+.
T Consensus 17 ~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 17 DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 4445999999999999999999999999999999999986
No 62
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.66 E-value=4.5e-08 Score=85.80 Aligned_cols=101 Identities=24% Similarity=0.391 Sum_probs=76.8
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC----cee--echhhhcCCCCCCCcceeEEE----e
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG----EAV--EGPEFRNMSPADIIPKLQVMA----R 514 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~----~~~--~g~~~~~~~~~~~~~~~~v~~----~ 514 (563)
.+.|++++.+..|++.|.+|.++||--..-+.++|.+|||+..+. ..+ +|+. .-|- .
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~-------------~gfd~~~pt 154 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKY-------------LGFDTNEPT 154 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcc-------------cccccCCcc
Confidence 378999999999999999999999999999999999999986321 111 1110 0111 1
Q ss_pred cChhhHHHHHHHHHHhcC-CEEEEEcCCccCHHHHhhCCceEeec
Q 044020 515 SLPSDKHTLVTQLRNTFG-EVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 515 ~~p~~K~~~v~~l~~~~g-~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
.....|.+.++.+++.++ ..++|||||.||++|+..|+.=++.|
T Consensus 155 sdsggKa~~i~~lrk~~~~~~~~mvGDGatDlea~~pa~afi~~~ 199 (227)
T KOG1615|consen 155 SDSGGKAEVIALLRKNYNYKTIVMVGDGATDLEAMPPADAFIGFG 199 (227)
T ss_pred ccCCccHHHHHHHHhCCChheeEEecCCccccccCCchhhhhccC
Confidence 223579999999988644 58999999999999999877655544
No 63
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.64 E-value=1.9e-07 Score=87.24 Aligned_cols=107 Identities=22% Similarity=0.262 Sum_probs=77.5
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
+++|++.+.++.|+++|++++++|+.....+..+++.+|+.......+...+.. ...+. .+....+..|...+
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g-----~~~p~--~~~~~~~~~k~~~~ 152 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKG-----FIQPD--GIVRVTFDNKGEAV 152 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCC-----eEecc--eeeEEccccHHHHH
Confidence 489999999999999999999999999999999999999864211111100000 00000 11123355677777
Q ss_pred HHHHHhcC---CEEEEEcCCccCHHHHhhCCceEeec
Q 044020 525 TQLRNTFG---EVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 525 ~~l~~~~g---~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
+.+.+.++ +.++++||+.||++|++.||++++++
T Consensus 153 ~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~ 189 (201)
T TIGR01491 153 ERLKRELNPSLTETVAVGDSKNDLPMFEVADISISLG 189 (201)
T ss_pred HHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEEC
Confidence 77765544 57999999999999999999999996
No 64
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.59 E-value=2.1e-07 Score=88.22 Aligned_cols=104 Identities=26% Similarity=0.309 Sum_probs=75.6
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCcee--echhhhcCCCCCCCcceeEEEe-cChhhHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAV--EGPEFRNMSPADIIPKLQVMAR-SLPSDKH 521 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~--~g~~~~~~~~~~~~~~~~v~~~-~~p~~K~ 521 (563)
++.+++.+.++.|+++|++++++|+.....+..+++.+|+.......+ .+..+. ..+... ..+..|.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~k~ 154 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLT----------GLVEGPIVDASYKG 154 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEE----------EEecCcccCCcccH
Confidence 589999999999999999999999999999999999999875211100 000000 000111 1123467
Q ss_pred HHHHHHHHhcC---CEEEEEcCCccCHHHHhhCCceEeec
Q 044020 522 TLVTQLRNTFG---EVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 522 ~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
.+++.+.++++ +.++++||+.+|++|++.||++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~ 194 (219)
T TIGR00338 155 KTLLILLRKEGISPENTVAVGDGANDLSMIKAAGLGIAFN 194 (219)
T ss_pred HHHHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEeC
Confidence 77777766544 57999999999999999999999986
No 65
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.58 E-value=1.6e-07 Score=90.82 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=82.4
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC-ceeechhhhc----------------------
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG-EAVEGPEFRN---------------------- 499 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~-~~~~g~~~~~---------------------- 499 (563)
..+..|.+.+++++++++|+.++++|||+...++.+.+++++..+.- ++-+|..+..
T Consensus 19 ~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~~~~~~~~~~~~~~~~~~~~~ 98 (249)
T TIGR01485 19 DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGGAEVPDQHWAEYLSEKWQRDI 98 (249)
T ss_pred ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCCCCcCCHHHHHHHhcccCHHH
Confidence 34577899999999999999999999999999999999999865421 1111211100
Q ss_pred ----------CCCC----CCCc---------------------------ceeE-E-----EecCh--hhHHHHHHHHHHh
Q 044020 500 ----------MSPA----DIIP---------------------------KLQV-M-----ARSLP--SDKHTLVTQLRNT 530 (563)
Q Consensus 500 ----------~~~~----~~~~---------------------------~~~v-~-----~~~~p--~~K~~~v~~l~~~ 530 (563)
+... +... +..+ + .++.| ..|...++.+.+.
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~~~~~K~~al~~l~~~ 178 (249)
T TIGR01485 99 VVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILPQGSGKGQALQYLLQK 178 (249)
T ss_pred HHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEeCCCChHHHHHHHHHH
Confidence 0000 0000 0000 1 12233 3588888888877
Q ss_pred cC---CEEEEEcCCccCHHHHhh-CCceEeecCCCC
Q 044020 531 FG---EVVAVTGDGTNDASALHE-ADIGLAMGIAGT 562 (563)
Q Consensus 531 ~g---~~v~~iGDg~ND~~~l~~-a~vgiamg~~~~ 562 (563)
+| +.++++||+.||++||+. ++.||||+ |+.
T Consensus 179 ~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~-na~ 213 (249)
T TIGR01485 179 LAMEPSQTLVCGDSGNDIELFEIGSVRGVIVS-NAQ 213 (249)
T ss_pred cCCCccCEEEEECChhHHHHHHccCCcEEEEC-CCH
Confidence 65 689999999999999998 67999999 875
No 66
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.52 E-value=4.1e-07 Score=85.31 Aligned_cols=99 Identities=23% Similarity=0.287 Sum_probs=77.4
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCcee--echhhhcCCCCCCCcceeEEE--ecChhhH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAV--EGPEFRNMSPADIIPKLQVMA--RSLPSDK 520 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~--~g~~~~~~~~~~~~~~~~v~~--~~~p~~K 520 (563)
++.|++.+.++.|+++ +++.++|+.....+..+.+++|+.......+ ..... +.. ...|..|
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~-------------i~~~~~~~p~~k 133 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGM-------------ITGYDLRQPDGK 133 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCe-------------EECccccccchH
Confidence 3689999999999999 9999999999999999999999864211111 00000 100 1236778
Q ss_pred HHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 521 HTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 521 ~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
...++.++.. ++.++||||+.||++|.+.|++|++++
T Consensus 134 ~~~l~~~~~~-~~~~v~iGDs~~D~~~~~aa~~~v~~~ 170 (205)
T PRK13582 134 RQAVKALKSL-GYRVIAAGDSYNDTTMLGEADAGILFR 170 (205)
T ss_pred HHHHHHHHHh-CCeEEEEeCCHHHHHHHHhCCCCEEEC
Confidence 8888888876 889999999999999999999999875
No 67
>PLN02382 probable sucrose-phosphatase
Probab=98.50 E-value=4e-07 Score=93.93 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=79.5
Q ss_pred CCCcchHHHH-HHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC-ceeechhh-------------------------
Q 044020 445 PVRPGVKEAV-QTCLEAGITVRMVTGDNINTARAIAKECGILTSDG-EAVEGPEF------------------------- 497 (563)
Q Consensus 445 ~~~~~~~~~I-~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~-~~~~g~~~------------------------- 497 (563)
++.+....++ +++++.|+.++++|||++..+..+.+++++..+.- ++-+|..+
T Consensus 28 ~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~~~I~~nGt~I~~~~~~~~d~~w~~~l~~~w~~~~v 107 (413)
T PLN02382 28 NLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPDITIMSVGTEIAYGESMVPDHGWVEYLNKKWDREIV 107 (413)
T ss_pred chhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCCEEEEcCCcEEEeCCCCccChhHHHHHhccCChhhH
Confidence 3444455556 88999999999999999999999999999876531 11112110
Q ss_pred ----hcCC-----CC--CCCc---------------------------cee------EEEecChh--hHHHHHHHHHHhc
Q 044020 498 ----RNMS-----PA--DIIP---------------------------KLQ------VMARSLPS--DKHTLVTQLRNTF 531 (563)
Q Consensus 498 ----~~~~-----~~--~~~~---------------------------~~~------v~~~~~p~--~K~~~v~~l~~~~ 531 (563)
..+. .. +... ... .+.++.|. .|...++.+.+++
T Consensus 108 ~~~~~~~~~l~~q~~~~~~~~Ki~~~~~~~~~~~~~~~l~~~~~~~g~~~~i~~s~~~~ldI~p~g~sKg~Al~~L~~~~ 187 (413)
T PLN02382 108 VEETSKFPELKLQPETEQRPHKVSFYVDKKKAQEVIKELSERLEKRGLDVKIIYSGGIDLDVLPQGAGKGQALAYLLKKL 187 (413)
T ss_pred HHHHhcCCCcccCCcccCCCeEEEEEechHHhHHHHHHHHHHHHhcCCcEEEEEECCcEEEEEeCCCCHHHHHHHHHHHh
Confidence 0000 00 0000 001 12233443 5889999998876
Q ss_pred ---C---CEEEEEcCCccCHHHHhhCC-ceEeecCCCC
Q 044020 532 ---G---EVVAVTGDGTNDASALHEAD-IGLAMGIAGT 562 (563)
Q Consensus 532 ---g---~~v~~iGDg~ND~~~l~~a~-vgiamg~~~~ 562 (563)
| +.++++||+.||++||+.++ .||||| ||.
T Consensus 188 ~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~-NA~ 224 (413)
T PLN02382 188 KAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVS-NAQ 224 (413)
T ss_pred hhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEc-CCc
Confidence 3 58999999999999999999 699999 875
No 68
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.50 E-value=5.1e-07 Score=87.91 Aligned_cols=117 Identities=16% Similarity=0.284 Sum_probs=79.3
Q ss_pred CCCcchHHHHHHHHh-CCCeEEEEcCCCHHHHHHHHHHcCCC--CCCCc-eee--ch-hhhcCC----------------
Q 044020 445 PVRPGVKEAVQTCLE-AGITVRMVTGDNINTARAIAKECGIL--TSDGE-AVE--GP-EFRNMS---------------- 501 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~-~gi~v~i~TGd~~~~a~~~a~~lgi~--~~~~~-~~~--g~-~~~~~~---------------- 501 (563)
.+.+.++++|++|++ .|++|+++|||+...+..+++.+++. ..+.. +.. +. ....+.
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~l~~~~~~~i~~~l~~~~~ 115 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKTHIVHLPDAIARDISVQLHTALA 115 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCCeeeccCChhHHHHHHHHHHHHhc
Confidence 577899999999998 79999999999999999988877642 11110 100 00 000000
Q ss_pred ----------------------CC------------CCCccee-----EEEecCh--hhHHHHHHHHHHhcC---CEEEE
Q 044020 502 ----------------------PA------------DIIPKLQ-----VMARSLP--SDKHTLVTQLRNTFG---EVVAV 537 (563)
Q Consensus 502 ----------------------~~------------~~~~~~~-----v~~~~~p--~~K~~~v~~l~~~~g---~~v~~ 537 (563)
.. ....... .+.++.| ..|+..++.+.+++| ..+++
T Consensus 116 ~~pg~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g~~Kg~al~~ll~~~~~~~~~v~~ 195 (266)
T PRK10187 116 QLPGAELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRGTNKGEAIAAFMQEAPFAGRTPVF 195 (266)
T ss_pred cCCCcEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 00 0000011 1223344 368899998888765 68999
Q ss_pred EcCCccCHHHHhhC----CceEeecCCCC
Q 044020 538 TGDGTNDASALHEA----DIGLAMGIAGT 562 (563)
Q Consensus 538 iGDg~ND~~~l~~a----~vgiamg~~~~ 562 (563)
+||+.||.+||+.+ ++||+|| ++.
T Consensus 196 ~GD~~nD~~mf~~~~~~~g~~vavg-~a~ 223 (266)
T PRK10187 196 VGDDLTDEAGFAVVNRLGGISVKVG-TGA 223 (266)
T ss_pred EcCCccHHHHHHHHHhcCCeEEEEC-CCC
Confidence 99999999999999 9999999 764
No 69
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.49 E-value=8e-07 Score=83.87 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=76.1
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC---CCceeechhhhcCCCCCCCcceeEE--EecChh
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTS---DGEAVEGPEFRNMSPADIIPKLQVM--ARSLPS 518 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~---~~~~~~g~~~~~~~~~~~~~~~~v~--~~~~p~ 518 (563)
-+++|++.+.++.|++.|+++.++||.....+..+++.++.... +...+.+..+.... +.-..+ ......
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~-----p~~~~~~~~~~cg~ 143 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDW-----PHPCDGTCQNQCGC 143 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeC-----CCCCccccccCCCC
Confidence 35999999999999999999999999999999999988754321 11222222211000 000000 000124
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEee
Q 044020 519 DKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAM 557 (563)
Q Consensus 519 ~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiam 557 (563)
.|..+++.++.. ++.+++||||.||++|++.||+.+|=
T Consensus 144 ~K~~~l~~~~~~-~~~~i~iGDg~~D~~~a~~Ad~~~ar 181 (214)
T TIGR03333 144 CKPSLIRKLSEP-NDYHIVIGDSVTDVEAAKQSDLCFAR 181 (214)
T ss_pred CHHHHHHHHhhc-CCcEEEEeCCHHHHHHHHhCCeeEeh
Confidence 689999988876 78899999999999999999998763
No 70
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.48 E-value=6.8e-07 Score=83.60 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=77.7
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC--ceeechhhhcCCCCCCCcceeEEEecChhhH
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG--EAVEGPEFRNMSPADIIPKLQVMARSLPSDK 520 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~--~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K 520 (563)
..++.+++.+.++.++++|++++++||.....+..+++.+|+..--. .....+.. ...+. .-..+..+.|
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~-------~~g~~-~~~~~~g~~K 156 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGI-------YTGNI-DGNNCKGEGK 156 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCE-------EeCCc-cCCCCCChHH
Confidence 34589999999999999999999999999999999999999964211 11100000 00000 0011235678
Q ss_pred HHHHHHHHHhcC---CEEEEEcCCccCHHHHhhCCceEeec
Q 044020 521 HTLVTQLRNTFG---EVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 521 ~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
...++.+.+..+ +.+.++||+.+|++|++.||.++++.
T Consensus 157 ~~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 157 VHALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HHHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 887877765434 37899999999999999999999886
No 71
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.45 E-value=1.5e-06 Score=83.35 Aligned_cols=44 Identities=5% Similarity=0.006 Sum_probs=40.2
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
.+.+.+.++++|++|+++|+.|+++|||+...+..+.+++++..
T Consensus 16 ~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~ 59 (302)
T PRK12702 16 EFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEH 59 (302)
T ss_pred CCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC
Confidence 34577889999999999999999999999999999999999864
No 72
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.44 E-value=9e-07 Score=94.13 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=37.4
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
+.+.++++|++|+++|++++++|||+...+..+++++|+.
T Consensus 434 i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 434 SYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 5568899999999999999999999999999999999975
No 73
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.40 E-value=6e-07 Score=86.14 Aligned_cols=43 Identities=28% Similarity=0.459 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhcC---CEEEEEcCCccCHHHHhhCCceEeecCCCC
Q 044020 519 DKHTLVTQLRNTFG---EVVAVTGDGTNDASALHEADIGLAMGIAGT 562 (563)
Q Consensus 519 ~K~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a~vgiamg~~~~ 562 (563)
.|...++.+.+++| ..++++||+.||++||+.++.||+|+ |+.
T Consensus 159 ~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~-na~ 204 (236)
T TIGR02471 159 SKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVG-NHD 204 (236)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEc-CCc
Confidence 68888888888765 47999999999999999999999999 875
No 74
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.38 E-value=1.1e-06 Score=80.17 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=70.3
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVT 525 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~ 525 (563)
+++++.+.++.+++.|++++++||.....+..+++.+|+..-....+...+ ......+...-....+..|...++
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~-----~g~~~g~~~~~~~~~~~~K~~~l~ 148 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDD-----NGLLTGPIEGQVNPEGECKGKVLK 148 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECC-----CCEEeCccCCcccCCcchHHHHHH
Confidence 679999999999999999999999999999999999998641111110000 000000000001234578999998
Q ss_pred HHHHhcC---CEEEEEcCCccCHHHHhhC
Q 044020 526 QLRNTFG---EVVAVTGDGTNDASALHEA 551 (563)
Q Consensus 526 ~l~~~~g---~~v~~iGDg~ND~~~l~~a 551 (563)
.+.+..+ +.++++|||.||++|++.|
T Consensus 149 ~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 149 ELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 8776533 5799999999999999875
No 75
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.36 E-value=8.6e-07 Score=82.08 Aligned_cols=92 Identities=25% Similarity=0.233 Sum_probs=67.6
Q ss_pred cchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChh---hHHHHH
Q 044020 448 PGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPS---DKHTLV 524 (563)
Q Consensus 448 ~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~---~K~~~v 524 (563)
+++.+.|+.++++|++++|+||.+...+.++++.+|+.......... . .. .......+.++. .|...+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~-~-~~-------~~~~~~~~~~~~~~~~K~~~l 162 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL-F-DN-------GGGIFTGRITGSNCGGKAEAL 162 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE-E-CT-------TCCEEEEEEEEEEESHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee-e-ec-------ccceeeeeECCCCCCcHHHHH
Confidence 78889999999999999999999999999999999997522111111 0 00 001123333333 499999
Q ss_pred HHH------HHhcCCEEEEEcCCccCHHHHh
Q 044020 525 TQL------RNTFGEVVAVTGDGTNDASALH 549 (563)
Q Consensus 525 ~~l------~~~~g~~v~~iGDg~ND~~~l~ 549 (563)
+.+ +.. ...++++|||.||++|||
T Consensus 163 ~~~~~~~~~~~~-~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 163 KELYIRDEEDID-PDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHHHHHHTHT-CCEEEEEESSGGGHHHHH
T ss_pred HHHHHHhhcCCC-CCeEEEEECCHHHHHHhC
Confidence 999 233 689999999999999996
No 76
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.35 E-value=2e-06 Score=79.24 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=77.8
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCC-CCCcceeEEEe--cChhhH
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPA-DIIPKLQVMAR--SLPSDK 520 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~-~~~~~~~v~~~--~~p~~K 520 (563)
-++.+++.+.++.|++.|+++.++|+.....+..+.+.+|+......++......+-... ...+....-+. .....|
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 368999999999999999999999999999999999999986543333332221110000 00000000001 112358
Q ss_pred HHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEe
Q 044020 521 HTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556 (563)
Q Consensus 521 ~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgia 556 (563)
..+++.++.+..+.++++|||.||+.|.+.||+-.|
T Consensus 151 ~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~a 186 (188)
T TIGR01489 151 GKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVFA 186 (188)
T ss_pred HHHHHHHHhhcCceEEEECCCcchhchHhcCCcccc
Confidence 889998877536789999999999999999987654
No 77
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.32 E-value=2.1e-06 Score=74.26 Aligned_cols=114 Identities=21% Similarity=0.211 Sum_probs=75.0
Q ss_pred ccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCC---CCCcceeEEEecChh
Q 044020 442 IKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPA---DIIPKLQVMARSLPS 518 (563)
Q Consensus 442 ~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~---~~~~~~~v~~~~~p~ 518 (563)
...++.+++.+.+++|++.|++++++||+....+...++.+|+......++........... ..........+..+.
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHH
Confidence 34578999999999999999999999999999999999999985433333322211100000 001111122233344
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCC-ceEe
Q 044020 519 DKHTLVTQLRNTFGEVVAVTGDGTNDASALHEAD-IGLA 556 (563)
Q Consensus 519 ~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~-vgia 556 (563)
.+..+.+.+... .+.++++||+.+|+.|++.++ -+|+
T Consensus 101 ~~~~~~~~~~~~-~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 101 KLLAALKLLGVD-PEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred HHHHHHHHcCCC-hhhEEEeCCCHHHHHHHHHcCCceee
Confidence 455555555443 578999999999999999954 3554
No 78
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.29 E-value=2.8e-06 Score=80.49 Aligned_cols=105 Identities=24% Similarity=0.241 Sum_probs=73.0
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCC----CceeechhhhcCCCCCCCcceeE--EEecChh
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSD----GEAVEGPEFRNMSPADIIPKLQV--MARSLPS 518 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~----~~~~~g~~~~~~~~~~~~~~~~v--~~~~~p~ 518 (563)
+++|++.+.++.|++.|+++.++|+-....+..+.+.+ +.... ...+.|..+... .+.-.. +......
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~-----kp~p~~~~~~~~~~~ 147 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITIT-----WPHPCDEHCQNHCGC 147 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEe-----ccCCccccccccCCC
Confidence 58999999999999999999999999999999999998 64311 111222211000 000000 0000012
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEe
Q 044020 519 DKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556 (563)
Q Consensus 519 ~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgia 556 (563)
.|..+++.++.. ++.+++||||.||++|.+.||+.++
T Consensus 148 ~K~~~l~~~~~~-~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 148 CKPSLIRKLSDT-NDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred chHHHHHHhccC-CCCEEEEeCCHHHHHHHHHCCccee
Confidence 478888888776 6789999999999999999999665
No 79
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.28 E-value=2.6e-06 Score=80.74 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=81.8
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHH
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHT 522 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~ 522 (563)
...+-|++.+++..|+++|++..++|+++...+..+.+.+|+......++.+.+. ......|.....
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~-------------~~~KP~P~~l~~ 153 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDV-------------PPPKPDPEPLLL 153 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCC-------------CCCCcCHHHHHH
Confidence 4568899999999999999999999999999999999999998765555543321 122345666667
Q ss_pred HHHHHHHhcCCEEEEEcCCccCHHHHhhCC---ceEeec
Q 044020 523 LVTQLRNTFGEVVAVTGDGTNDASALHEAD---IGLAMG 558 (563)
Q Consensus 523 ~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~---vgiamg 558 (563)
+++.+... .++++||||..+|+.|-+.|| +|+..|
T Consensus 154 ~~~~~~~~-~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g 191 (220)
T COG0546 154 LLEKLGLD-PEEALMVGDSLNDILAAKAAGVPAVGVTWG 191 (220)
T ss_pred HHHHhCCC-hhheEEECCCHHHHHHHHHcCCCEEEEECC
Confidence 77777665 568999999999999999999 567766
No 80
>PLN02954 phosphoserine phosphatase
Probab=98.27 E-value=5.5e-06 Score=78.80 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=72.0
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC----ceeechhhhcCCCCCCCcceeEEEe------
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG----EAVEGPEFRNMSPADIIPKLQVMAR------ 514 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~----~~~~g~~~~~~~~~~~~~~~~v~~~------ 514 (563)
++.|++.+.++.|+++|+++.++||.....+..+++.+|+..... ..+..... +...
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~-------------~~g~~~~~~~ 150 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGE-------------YAGFDENEPT 150 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCc-------------EECccCCCcc
Confidence 378999999999999999999999999999999999999963110 00100000 0000
Q ss_pred cChhhHHHHHHHHHHhcC-CEEEEEcCCccCHHHHhhC--CceEeec
Q 044020 515 SLPSDKHTLVTQLRNTFG-EVVAVTGDGTNDASALHEA--DIGLAMG 558 (563)
Q Consensus 515 ~~p~~K~~~v~~l~~~~g-~~v~~iGDg~ND~~~l~~a--~vgiamg 558 (563)
.....|...++.+.+.++ +.++++||+.||+.|.+.+ +++++.|
T Consensus 151 ~~~~~K~~~i~~~~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~~~~ 197 (224)
T PLN02954 151 SRSGGKAEAVQHIKKKHGYKTMVMIGDGATDLEARKPGGADLFIGYG 197 (224)
T ss_pred cCCccHHHHHHHHHHHcCCCceEEEeCCHHHHHhhhcCCCCEEEecC
Confidence 112357788888777644 5799999999999998884 4445444
No 81
>PTZ00174 phosphomannomutase; Provisional
Probab=98.17 E-value=8.8e-06 Score=78.54 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=36.2
Q ss_pred EEecccC-CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH
Q 044020 438 AVVGIKD-PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKE 481 (563)
Q Consensus 438 G~i~~~d-~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~ 481 (563)
|++.-.+ ++.+.++++|++++++|++++++|||+........+.
T Consensus 14 GTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~~ 58 (247)
T PTZ00174 14 GTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLGE 58 (247)
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 4444444 5999999999999999999999999999988776653
No 82
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.16 E-value=8.7e-06 Score=76.21 Aligned_cols=113 Identities=23% Similarity=0.378 Sum_probs=76.8
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC--CCCCC-ceee-chhh--------h-------cC-----
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGI--LTSDG-EAVE-GPEF--------R-------NM----- 500 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi--~~~~~-~~~~-g~~~--------~-------~~----- 500 (563)
++.+.+.++|++|++.|++++++|||+...+..+++.++. ...+. .+.. +... . .+
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLPLPLIAENGALIFYPGEILYIEPSDVFEEILGIKEEIGAELK 96 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCCCCEEECCCcEEEECCEEEEEcccccHHHHHHhhhhcCceee
Confidence 5889999999999999999999999999999999988542 11111 1111 0000 0 00
Q ss_pred --CC---------C---------CC--------------------CcceeEE------EecCh--hhHHHHHHHHHHhcC
Q 044020 501 --SP---------A---------DI--------------------IPKLQVM------ARSLP--SDKHTLVTQLRNTFG 532 (563)
Q Consensus 501 --~~---------~---------~~--------------------~~~~~v~------~~~~p--~~K~~~v~~l~~~~g 532 (563)
.. . .. .....+. .++.| ..|...++.+.++++
T Consensus 97 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ev~p~~~~K~~~~~~~~~~~~ 176 (204)
T TIGR01484 97 SLSEHYVGTFIEDKAIAVAIHYVGAELGQELDSKMRERLEKIGRNDLELEAIYVGKTDLEVLPAGVDKGSALQALLKELN 176 (204)
T ss_pred eeccccccceeecccceeeEEEeccchhhHHHHHHHHHHHhhccccCcEEEEEecCCEEEEecCCCChHHHHHHHHHHhC
Confidence 00 0 00 0111121 12334 468899999887755
Q ss_pred ---CEEEEEcCCccCHHHHhhCCceEee
Q 044020 533 ---EVVAVTGDGTNDASALHEADIGLAM 557 (563)
Q Consensus 533 ---~~v~~iGDg~ND~~~l~~a~vgiam 557 (563)
+.++++||+.||.+|++.+++||||
T Consensus 177 ~~~~~~~~~GD~~nD~~~~~~~~~~vam 204 (204)
T TIGR01484 177 GKRDEILAFGDSGNDEEMFEVAGLAVAV 204 (204)
T ss_pred CCHHHEEEEcCCHHHHHHHHHcCCceEC
Confidence 6799999999999999999999998
No 83
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.12 E-value=1.1e-05 Score=76.89 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=72.6
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
.++.|++.++++.|+++|++++++|+........+.+.+|+......++.+.... .....|+--..+
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~-------------~~kp~~~~~~~~ 158 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLP-------------NKKPDPAPLLLA 158 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCC-------------CCCcChHHHHHH
Confidence 4588999999999999999999999999999999999999865333333222110 001122323344
Q ss_pred HHHHHHhcCCEEEEEcCCccCHHHHhhCCc-eEeec
Q 044020 524 VTQLRNTFGEVVAVTGDGTNDASALHEADI-GLAMG 558 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg~ND~~~l~~a~v-giamg 558 (563)
++.++.. .+.+++|||+.+|+.|.+.+|+ +|.+.
T Consensus 159 ~~~~~~~-~~~~i~igD~~~Di~~a~~~g~~~i~v~ 193 (226)
T PRK13222 159 CEKLGLD-PEEMLFVGDSRNDIQAARAAGCPSVGVT 193 (226)
T ss_pred HHHcCCC-hhheEEECCCHHHHHHHHHCCCcEEEEC
Confidence 4444443 5789999999999999999999 55543
No 84
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.04 E-value=1.2e-05 Score=75.75 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=70.4
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.++++.|+++|+++.++|+.+...+..+.+.+|+......++.+.+.. .....|+--..++
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~-------------~~Kp~p~~~~~~~ 151 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLA-------------QRKPHPDPLLLAA 151 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCC-------------CCCCChHHHHHHH
Confidence 588999999999999999999999999999999999999875433333322210 0112223233444
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
+.+... .+.+++|||+.+|+.+.+.||+-.
T Consensus 152 ~~~~~~-~~~~~~igDs~~d~~aa~~aG~~~ 181 (213)
T TIGR01449 152 ERLGVA-PQQMVYVGDSRVDIQAARAAGCPS 181 (213)
T ss_pred HHcCCC-hhHeEEeCCCHHHHHHHHHCCCeE
Confidence 444333 477999999999999999999854
No 85
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.03 E-value=1.3e-05 Score=75.19 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=70.1
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.+++.+++++|+++|+++.++|+.+...+....+.+|+......++...+. ...+..|+--..++
T Consensus 75 ~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~-------------~~~KP~~~~~~~~~ 141 (205)
T TIGR01454 75 EVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEV-------------PRPKPAPDIVREAL 141 (205)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcC-------------CCCCCChHHHHHHH
Confidence 58899999999999999999999999999999999999986532222222111 01122233333444
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
+.++-. .+.+++|||+.+|+.+-+.+|+..
T Consensus 142 ~~~~~~-~~~~l~igD~~~Di~aA~~~Gi~~ 171 (205)
T TIGR01454 142 RLLDVP-PEDAVMVGDAVTDLASARAAGTAT 171 (205)
T ss_pred HHcCCC-hhheEEEcCCHHHHHHHHHcCCeE
Confidence 444433 478999999999999999999953
No 86
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.01 E-value=1.4e-05 Score=75.96 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=71.2
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
-++.|++.++++.|+++|+++.++|+.....+..+.+.+|+......++.+... -.....|+--..+
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~-------------~~~Kp~~~~~~~~ 157 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKL-------------PYSKPHPEVYLNC 157 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccC-------------CCCCCCHHHHHHH
Confidence 357899999999999999999999999999999999999987644444333221 0112223322233
Q ss_pred HHHHHHhcCCEEEEEcCCccCHHHHhhCCceEe
Q 044020 524 VTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgia 556 (563)
++.+... .+++++|||+.+|+.+.+.||+..+
T Consensus 158 ~~~~~~~-~~~~~~igDs~~Di~aA~~aG~~~i 189 (222)
T PRK10826 158 AAKLGVD-PLTCVALEDSFNGMIAAKAARMRSI 189 (222)
T ss_pred HHHcCCC-HHHeEEEcCChhhHHHHHHcCCEEE
Confidence 3333222 3789999999999999999998543
No 87
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.94 E-value=2.4e-05 Score=76.58 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=69.9
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
.++.+++.++|+.|+++|++++++|+.+...+..+.+++|+......++.+.+.. .....|+--..+
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~-------------~~Kp~p~~~~~~ 166 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLP-------------QKKPDPAALLFV 166 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCC-------------CCCCCcHHHHHH
Confidence 3688999999999999999999999999999999999999865332232222110 001112222233
Q ss_pred HHHHHHhcCCEEEEEcCCccCHHHHhhCCc-eEeec
Q 044020 524 VTQLRNTFGEVVAVTGDGTNDASALHEADI-GLAMG 558 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg~ND~~~l~~a~v-giamg 558 (563)
++.+.-. .+.+++|||+.||+.|.+.||+ .+++.
T Consensus 167 ~~~~g~~-~~~~l~IGD~~~Di~aA~~aGi~~i~v~ 201 (272)
T PRK13223 167 MKMAGVP-PSQSLFVGDSRSDVLAAKAAGVQCVALS 201 (272)
T ss_pred HHHhCCC-hhHEEEECCCHHHHHHHHHCCCeEEEEe
Confidence 3333322 4789999999999999999998 44443
No 88
>PRK08238 hypothetical protein; Validated
Probab=97.91 E-value=4.7e-05 Score=79.93 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=71.3
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
+++|++.+.+++++++|++++++|+.+...+..+++.+|+.+ .++.+++. .+..|+.|.+.+
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd---~Vigsd~~---------------~~~kg~~K~~~l 133 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFD---GVFASDGT---------------TNLKGAAKAAAL 133 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC---EEEeCCCc---------------cccCCchHHHHH
Confidence 478999999999999999999999999999999999999721 22222110 124456676554
Q ss_pred HHHHHhcCCE-EEEEcCCccCHHHHhhCCceEeec
Q 044020 525 TQLRNTFGEV-VAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 525 ~~l~~~~g~~-v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
+.. +++. +.++||+.+|++|++.|+-.++++
T Consensus 134 ~~~---l~~~~~~yvGDS~~Dlp~~~~A~~av~Vn 165 (479)
T PRK08238 134 VEA---FGERGFDYAGNSAADLPVWAAARRAIVVG 165 (479)
T ss_pred HHH---hCccCeeEecCCHHHHHHHHhCCCeEEEC
Confidence 432 2433 678899999999999999999987
No 89
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.89 E-value=2.4e-05 Score=73.82 Aligned_cols=95 Identities=19% Similarity=0.109 Sum_probs=69.6
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVT 525 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~ 525 (563)
+.|++.++++.|+++|+++.++|+.....+....+.+|+......++...+.. .....|+--..+++
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~-------------~~Kp~p~~~~~~~~ 149 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVE-------------HAKPDPEPVLKALE 149 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCC-------------CCCCCcHHHHHHHH
Confidence 78999999999999999999999999999999999999976333333322110 01122333334444
Q ss_pred HHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 526 QLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 526 ~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
.+... ...+++|||+.+|+.+-++||+-
T Consensus 150 ~~~~~-~~~~~~iGDs~~Di~aa~~aG~~ 177 (214)
T PRK13288 150 LLGAK-PEEALMVGDNHHDILAGKNAGTK 177 (214)
T ss_pred HcCCC-HHHEEEECCCHHHHHHHHHCCCe
Confidence 44433 46899999999999999999983
No 90
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.88 E-value=4.1e-05 Score=73.04 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=72.6
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+......++.+.+. -.....|+--..++
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~-------------~~~KP~p~~~~~~~ 161 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTL-------------AERKPHPLPLLVAA 161 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcC-------------CCCCCCHHHHHHHH
Confidence 47899999999999999999999999998888899999987543333333221 11123344444555
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
+.+... .+.+++|||+.+|+.|-+.||+..
T Consensus 162 ~~l~~~-p~~~l~IGDs~~Di~aA~~aG~~~ 191 (229)
T PRK13226 162 ERIGVA-PTDCVYVGDDERDILAARAAGMPS 191 (229)
T ss_pred HHhCCC-hhhEEEeCCCHHHHHHHHHCCCcE
Confidence 555544 578999999999999999999853
No 91
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=97.84 E-value=4.3e-05 Score=73.57 Aligned_cols=44 Identities=32% Similarity=0.494 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHhcC---CEEEEEcCCccCHHHHhhCCceEeecCCCC
Q 044020 518 SDKHTLVTQLRNTFG---EVVAVTGDGTNDASALHEADIGLAMGIAGT 562 (563)
Q Consensus 518 ~~K~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a~vgiamg~~~~ 562 (563)
..|...++.++++++ +.|+++||+.||.+||..++.||.+| |+.
T Consensus 164 a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~~~~~~vvV~-Na~ 210 (247)
T PF05116_consen 164 ASKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLEGGDHGVVVG-NAQ 210 (247)
T ss_dssp -SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHCCSSEEEE-T-TS-
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHcCcCCEEEEc-CCC
Confidence 469999999998865 47888999999999999999999999 774
No 92
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.83 E-value=5.2e-05 Score=70.51 Aligned_cols=94 Identities=16% Similarity=0.059 Sum_probs=69.8
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHH
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHT 522 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~ 522 (563)
.+++.+...++++.|+++|+++.++||.+...+..+.+.+|+......++.+.+ +.....|+.-..
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~--------------~~~KP~p~~~~~ 169 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMED--------------CPPKPNPEPLIL 169 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecC--------------CCCCcCHHHHHH
Confidence 344666779999999999999999999999999999999999764444433332 111334544455
Q ss_pred HHHHHHHhcCCEEEEEcCCccCHHHHhhC
Q 044020 523 LVTQLRNTFGEVVAVTGDGTNDASALHEA 551 (563)
Q Consensus 523 ~v~~l~~~~g~~v~~iGDg~ND~~~l~~a 551 (563)
+++.+... .+.+++|||+.+|+.+-+.|
T Consensus 170 ~~~~~~~~-~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 170 AAKALGVE-ACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred HHHHhCcC-cccEEEEeCCHHHHHHHHhC
Confidence 56665554 57899999999999987654
No 93
>PRK11590 hypothetical protein; Provisional
Probab=97.82 E-value=0.00018 Score=67.67 Aligned_cols=106 Identities=13% Similarity=0.084 Sum_probs=73.9
Q ss_pred CCCcchHHHH-HHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 445 PVRPGVKEAV-QTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 445 ~~~~~~~~~I-~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
.+.|++.+.| +.+++.|++++++|+.+..-+..+++.+|+..... ++ |..++... ..++ .-..+..++|..-
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~-~i-~t~l~~~~----tg~~-~g~~c~g~~K~~~ 167 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVN-LI-ASQMQRRY----GGWV-LTLRCLGHEKVAQ 167 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCc-eE-EEEEEEEE----ccEE-CCccCCChHHHHH
Confidence 3589999999 57888999999999999999999999999632111 11 22221100 0000 1123556788887
Q ss_pred HHHHH-HhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 524 VTQLR-NTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 524 v~~l~-~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
++.+- .. .....+-||+.||.|||+.|+.++++.
T Consensus 168 l~~~~~~~-~~~~~aY~Ds~~D~pmL~~a~~~~~vn 202 (211)
T PRK11590 168 LERKIGTP-LRLYSGYSDSKQDNPLLYFCQHRWRVT 202 (211)
T ss_pred HHHHhCCC-cceEEEecCCcccHHHHHhCCCCEEEC
Confidence 77553 22 345567799999999999999999885
No 94
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.80 E-value=0.00017 Score=67.61 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=74.3
Q ss_pred CCCcchHHHHH-HHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 445 PVRPGVKEAVQ-TCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 445 ~~~~~~~~~I~-~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
.+.|++.+.|+ .++++|++++++|+-+..-+.++++..++..... ++ |.+++.... ..+ .-..+.-++|..-
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~-~i-~t~le~~~g----g~~-~g~~c~g~~Kv~r 166 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLN-LI-ASQIERGNG----GWV-LPLRCLGHEKVAQ 166 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCc-EE-EEEeEEeCC----ceE-cCccCCChHHHHH
Confidence 47899999996 7888999999999999999999999976633211 11 222221000 000 1123556788887
Q ss_pred HHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 524 VTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
++.+-..-.....+-||+.||.|||+.||..+++.
T Consensus 167 l~~~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vn 201 (210)
T TIGR01545 167 LEQKIGSPLKLYSGYSDSKQDNPLLAFCEHRWRVS 201 (210)
T ss_pred HHHHhCCChhheEEecCCcccHHHHHhCCCcEEEC
Confidence 76554221245567799999999999999999885
No 95
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.80 E-value=0.00013 Score=64.82 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=70.0
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHH---HHHHHc---C--CCCCCCceeechhhhcCCCCCCCcceeEEEe
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTAR---AIAKEC---G--ILTSDGEAVEGPEFRNMSPADIIPKLQVMAR 514 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~---~~a~~l---g--i~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~ 514 (563)
++.+.+++.+++++++++|++++++|||+...+. .+.+++ | +........+|..+... .+ .+..+
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~------~~-e~i~~ 97 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAAL------HR-EVISK 97 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhh------hc-ccccC
Confidence 4678999999999999999999999999988874 666662 3 33211111222221100 00 12222
Q ss_pred cChhhHHHHHHHHHHhc----CCEEEEEcCCccCHHHHhhCCce
Q 044020 515 SLPSDKHTLVTQLRNTF----GEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 515 ~~p~~K~~~v~~l~~~~----g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
...+.|...++.+.+.+ ...++.+||+.+|+.+.+++|+.
T Consensus 98 ~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 98 KPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 22235888888888743 35778899999999999998874
No 96
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.76 E-value=6.9e-05 Score=72.41 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=75.1
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.++++.|+++|+++.++|+.+...+....+.+|+......++.+.+.. .....|+--..++
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~-------------~~KP~p~~~~~a~ 174 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECE-------------HAKPHPDPYLKAL 174 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCC-------------CCCCChHHHHHHH
Confidence 478899999999999999999999999999999999999987555555554421 1133344445555
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
+.+... .+.+++|||+.+|+.+-+.||+-
T Consensus 175 ~~~~~~-~~~~l~vgDs~~Di~aA~~aGi~ 203 (248)
T PLN02770 175 EVLKVS-KDHTFVFEDSVSGIKAGVAAGMP 203 (248)
T ss_pred HHhCCC-hhHEEEEcCCHHHHHHHHHCCCE
Confidence 555544 57899999999999999999984
No 97
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.74 E-value=8.3e-05 Score=70.45 Aligned_cols=99 Identities=25% Similarity=0.246 Sum_probs=71.4
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC--CCCCceeechhhhcCCCCCCCcceeEEEecChhhHH
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL--TSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKH 521 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~--~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~ 521 (563)
.++.+++.+.++.|+++|+++.++|+.....+....+.+|+. .....++.+.+.. ..+..|+--.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~-------------~~KP~p~~~~ 152 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVA-------------AGRPAPDLIL 152 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCC-------------CCCCCHHHHH
Confidence 369999999999999999999999999999999999999987 4333343333210 0112233223
Q ss_pred HHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 522 TLVTQLRNTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
..++.+...-++.+++|||+.+|+.+-+.||+..
T Consensus 153 ~a~~~~~~~~~~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 153 RAMELTGVQDVQSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred HHHHHcCCCChhHeEEeCCCHHHHHHHHHCCCCe
Confidence 3333333210267999999999999999999986
No 98
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.73 E-value=0.0001 Score=71.48 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=69.6
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCC-CceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSD-GEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~-~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
++.|++.+.++.|+++|+++.++|+.+...+..+.+++|+.... ..++.+.+.. .....|+--...
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~-------------~~KP~p~~~~~a 165 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVP-------------AGRPAPWMALKN 165 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCC-------------CCCCCHHHHHHH
Confidence 36799999999999999999999999999999999999987642 3333333210 112233333344
Q ss_pred HHHHHHhcCCEEEEEcCCccCHHHHhhCCc
Q 044020 524 VTQLRNTFGEVVAVTGDGTNDASALHEADI 553 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg~ND~~~l~~a~v 553 (563)
++.+...-.+.+++|||+.+|+.+-+.||+
T Consensus 166 ~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi 195 (253)
T TIGR01422 166 AIELGVYDVAACVKVGDTVPDIEEGRNAGM 195 (253)
T ss_pred HHHcCCCCchheEEECCcHHHHHHHHHCCC
Confidence 444432103579999999999999999998
No 99
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.69 E-value=0.00013 Score=67.91 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=70.3
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.+++++|+++|+++.++|+-+...+....+.+|+......++...+.. .....|+--..++
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~-------------~~KP~~~~~~~~~ 158 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVR-------------AYKPAPQVYQLAL 158 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcC-------------CCCCCHHHHHHHH
Confidence 478999999999999999999999999999999999999865433333333211 1112233223444
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
+.+... .+.+++|||+.+|+.+-+.+|+-
T Consensus 159 ~~~~~~-p~~~~~vgD~~~Di~~A~~~G~~ 187 (198)
T TIGR01428 159 EALGVP-PDEVLFVASNPWDLGGAKKFGFK 187 (198)
T ss_pred HHhCCC-hhhEEEEeCCHHHHHHHHHCCCc
Confidence 444443 57899999999999999999984
No 100
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.67 E-value=8.2e-05 Score=68.31 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=64.9
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.++|+.|+++|+++.++|+... +....+.+|+......++.+.+. -..+..|+--..++
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~~~~-------------~~~kp~p~~~~~~~ 151 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDPAEI-------------KKGKPDPEIFLAAA 151 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEehhhc-------------CCCCCChHHHHHHH
Confidence 5789999999999999999999998543 46678889987544444433321 11122233223344
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
+.+.-. .+.+++|||+.+|+.+-+.+|+-
T Consensus 152 ~~~~~~-~~~~v~vgD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 152 EGLGVS-PSECIGIEDAQAGIEAIKAAGMF 180 (185)
T ss_pred HHcCCC-HHHeEEEecCHHHHHHHHHcCCE
Confidence 444332 36799999999999999999984
No 101
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.67 E-value=0.00011 Score=71.20 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=74.3
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.+++.+.++.|+++|+++.++|+.+...+..+.+.+|+......++.+.+.. .....|+--..++
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~-------------~~KP~Pe~~~~a~ 175 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVY-------------RGKPDPEMFMYAA 175 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCC-------------CCCCCHHHHHHHH
Confidence 468999999999999999999999999999999999999976555555554321 1123344444555
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
+.+.-. .+.+++|||+.+|+.+-+.||+-
T Consensus 176 ~~l~~~-p~~~l~IgDs~~Di~aA~~aG~~ 204 (260)
T PLN03243 176 ERLGFI-PERCIVFGNSNSSVEAAHDGCMK 204 (260)
T ss_pred HHhCCC-hHHeEEEcCCHHHHHHHHHcCCE
Confidence 555544 57899999999999999999984
No 102
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.66 E-value=0.00029 Score=67.89 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=64.7
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
-+++|++.+.++.|++.|+++.++||-....+..+++++|+...+..++... +..-....... . .-.-+....|.+.
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~-L~f~~dGvltG-~-~~P~i~~~~K~~~ 196 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNF-MDFDEDGVLKG-F-KGPLIHTFNKNHD 196 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeee-EEECCCCeEeC-C-CCCcccccccHHH
Confidence 3489999999999999999999999999999999999999865443331110 00000000000 0 0000111345544
Q ss_pred HH-HHHHhcC-----CEEEEEcCCccCHHHHh
Q 044020 524 VT-QLRNTFG-----EVVAVTGDGTNDASALH 549 (563)
Q Consensus 524 v~-~l~~~~g-----~~v~~iGDg~ND~~~l~ 549 (563)
+. ...+.++ ..++++|||.||+.|..
T Consensus 197 v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~ 228 (277)
T TIGR01544 197 VALRNTEYFNQLKDRSNIILLGDSQGDLRMAD 228 (277)
T ss_pred HHHHHHHHhCccCCcceEEEECcChhhhhHhc
Confidence 33 2333223 67999999999999944
No 103
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.63 E-value=0.00035 Score=60.27 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCC--------HHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEec
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDN--------INTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARS 515 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~--------~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~ 515 (563)
.++.+++.++++.|+++|++++++|+.. ...+..+.+.+|+.... ..+.+ -....
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~----------------~~~KP 86 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDV-LYACP----------------HCRKP 86 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEE-EEECC----------------CCCCC
Confidence 3678999999999999999999999998 77888899999885210 00000 00011
Q ss_pred ChhhHHHHHHHHH-HhcCCEEEEEcC-CccCHHHHhhCCce
Q 044020 516 LPSDKHTLVTQLR-NTFGEVVAVTGD-GTNDASALHEADIG 554 (563)
Q Consensus 516 ~p~~K~~~v~~l~-~~~g~~v~~iGD-g~ND~~~l~~a~vg 554 (563)
.|+--..+++.++ -. .+++++||| ..+|+.+-+.+|+-
T Consensus 87 ~~~~~~~~~~~~~~~~-~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 87 KPGMFLEALKRFNEID-PEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred ChHHHHHHHHHcCCCC-hhheEEEcCCCcccHHHHHHCCCe
Confidence 2222234444442 33 478999999 69999999999983
No 104
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.60 E-value=0.00015 Score=68.79 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=71.1
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.++++.|+++|++++++|+.+...+....+.+|+......++.+.+.. .....|+--..++
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~-------------~~KP~~~~~~~~~ 160 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEG-------------VEKPHPKIFYAAL 160 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCC-------------CCCCCHHHHHHHH
Confidence 478999999999999999999999999888899999999875433333332210 1122233333444
Q ss_pred HHHHHhcCCEEEEEcCCc-cCHHHHhhCCc-eEeec
Q 044020 525 TQLRNTFGEVVAVTGDGT-NDASALHEADI-GLAMG 558 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~-ND~~~l~~a~v-giamg 558 (563)
+.+... ...+++|||+. +|+.+-+.||+ .|.+.
T Consensus 161 ~~~~~~-~~~~~~igDs~~~di~~A~~aG~~~i~~~ 195 (221)
T TIGR02253 161 KRLGVK-PEEAVMVGDRLDKDIKGAKNLGMKTVWIN 195 (221)
T ss_pred HHcCCC-hhhEEEECCChHHHHHHHHHCCCEEEEEC
Confidence 444333 46899999998 99999999998 44443
No 105
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.58 E-value=0.00029 Score=78.87 Aligned_cols=117 Identities=18% Similarity=0.289 Sum_probs=75.0
Q ss_pred CCCcchHHHHHHHHh-CCCeEEEEcCCCHHHHHHHHHHcCCC--CCCCceee--chhhhcCC--CC--------------
Q 044020 445 PVRPGVKEAVQTCLE-AGITVRMVTGDNINTARAIAKECGIL--TSDGEAVE--GPEFRNMS--PA-------------- 503 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~-~gi~v~i~TGd~~~~a~~~a~~lgi~--~~~~~~~~--g~~~~~~~--~~-------------- 503 (563)
.+.+++.++|++|.+ .|+.|+++|||+..........+++. ..+...+. +....... ..
T Consensus 514 ~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l~liaenG~~i~~~~~~w~~~~~~~~~w~~~v~~il~~~~ 593 (726)
T PRK14501 514 VPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPIHLVAEHGAWSRAPGGEWQLLEPVATEWKDAVRPILEEFV 593 (726)
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCeEEEEeCCEEEeCCCCceEECCCcchhHHHHHHHHHHHHH
Confidence 467899999999999 59999999999999998887765531 11111110 11100000 00
Q ss_pred ---------------------------------------CCCc--ceeE-----EEecCh--hhHHHHHHHHHHhc-CCE
Q 044020 504 ---------------------------------------DIIP--KLQV-----MARSLP--SDKHTLVTQLRNTF-GEV 534 (563)
Q Consensus 504 ---------------------------------------~~~~--~~~v-----~~~~~p--~~K~~~v~~l~~~~-g~~ 534 (563)
.... ...+ +.++.| ..|+..++.+.+.. .+.
T Consensus 594 ~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a~~l~~~l~~~~~~~~~~v~~g~~~veV~p~~vnKG~al~~ll~~~~~d~ 673 (726)
T PRK14501 594 DRTPGSFIEEKEASLAWHYRNADPELGEARANELILALSSLLSNAPLEVLRGNKVVEVRPAGVNKGRAVRRLLEAGPYDF 673 (726)
T ss_pred hcCCCcEEEEcceEEEEEccCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEECCeEEEEEECCCCHHHHHHHHHhcCCCCE
Confidence 0000 0001 112333 36888888887753 268
Q ss_pred EEEEcCCccCHHHHhhC---CceEeecCCCC
Q 044020 535 VAVTGDGTNDASALHEA---DIGLAMGIAGT 562 (563)
Q Consensus 535 v~~iGDg~ND~~~l~~a---~vgiamg~~~~ 562 (563)
++++||+.||.+||+.+ +++|+|| ++.
T Consensus 674 vl~~GD~~nDe~Mf~~~~~~~~~v~vG-~~~ 703 (726)
T PRK14501 674 VLAIGDDTTDEDMFRALPETAITVKVG-PGE 703 (726)
T ss_pred EEEECCCCChHHHHHhcccCceEEEEC-CCC
Confidence 99999999999999996 7999999 653
No 106
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.55 E-value=0.0003 Score=68.66 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=67.5
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.+.++.|+++|+++.++|+.....+....+.+|+......++.+.+ .+ .|...+
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~-------------------~~-~k~~~~ 201 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTP-------------------IL-SKRRAL 201 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCC-------------------CC-CCHHHH
Confidence 4789999999999999999999999999999999999999764333322221 01 122333
Q ss_pred HHHHHhc---CCEEEEEcCCccCHHHHhhCCce
Q 044020 525 TQLRNTF---GEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 525 ~~l~~~~---g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
..+.+++ .+.+++|||+.+|+.+-+.||+-
T Consensus 202 ~~~l~~~~~~p~~~l~IGDs~~Di~aA~~AG~~ 234 (273)
T PRK13225 202 SQLVAREGWQPAAVMYVGDETRDVEAARQVGLI 234 (273)
T ss_pred HHHHHHhCcChhHEEEECCCHHHHHHHHHCCCe
Confidence 3333222 46799999999999999999984
No 107
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.53 E-value=0.00034 Score=68.44 Aligned_cols=96 Identities=15% Similarity=0.077 Sum_probs=67.0
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCC-CceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSD-GEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~-~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
.+.|++.++|+.|+++|+++.++|+.....+..+.+.+|+.... ..++.+.+. ......|+--..+
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~-------------~~~KP~p~~~~~a 167 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDV-------------PAGRPYPWMALKN 167 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcC-------------CCCCCChHHHHHH
Confidence 46799999999999999999999999999988888888875431 223222211 0112223333334
Q ss_pred HHHHHHhcCCEEEEEcCCccCHHHHhhCCc
Q 044020 524 VTQLRNTFGEVVAVTGDGTNDASALHEADI 553 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg~ND~~~l~~a~v 553 (563)
++.+.....+.+++|||+.+|+.+-+.||+
T Consensus 168 ~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~ 197 (267)
T PRK13478 168 AIELGVYDVAACVKVDDTVPGIEEGLNAGM 197 (267)
T ss_pred HHHcCCCCCcceEEEcCcHHHHHHHHHCCC
Confidence 444432112679999999999999999998
No 108
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.50 E-value=0.00025 Score=67.21 Aligned_cols=87 Identities=18% Similarity=0.210 Sum_probs=62.7
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCC----CHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGD----NINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKH 521 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd----~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~ 521 (563)
+.+.+++.++.++++|+++.++|++ ....+..+.+.+|+......++.+.... ...| +|.
T Consensus 115 p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~---------------~~Kp-~~~ 178 (237)
T TIGR01672 115 PKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPG---------------QYQY-TKT 178 (237)
T ss_pred chhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCC---------------CCCC-CHH
Confidence 3444999999999999999999999 6778999999999976433333333211 0112 233
Q ss_pred HHHHHHHHhcCCEEEEEcCCccCHHHHhhCCc
Q 044020 522 TLVTQLRNTFGEVVAVTGDGTNDASALHEADI 553 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~v 553 (563)
. .+++. + .++++||+.||+.+-+.||+
T Consensus 179 ~---~l~~~-~-i~i~vGDs~~DI~aAk~AGi 205 (237)
T TIGR01672 179 Q---WIQDK-N-IRIHYGDSDNDITAAKEAGA 205 (237)
T ss_pred H---HHHhC-C-CeEEEeCCHHHHHHHHHCCC
Confidence 2 33433 4 47899999999999999987
No 109
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.47 E-value=0.00037 Score=66.01 Aligned_cols=90 Identities=17% Similarity=0.276 Sum_probs=64.2
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCC----HHHHHHHHHHcCC--CCCCCceeechhhhcCCCCCCCcceeEEEecChh
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDN----INTARAIAKECGI--LTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPS 518 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~----~~~a~~~a~~lgi--~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~ 518 (563)
.+.+++++.++.++++|+++.++|+|+ ..++..+.+.+|+ ......++.|.. ....
T Consensus 114 ~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~------------------~~K~ 175 (237)
T PRK11009 114 IPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDK------------------PGQY 175 (237)
T ss_pred cchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCC------------------CCCC
Confidence 377889999999999999999999985 5588888888999 432222222221 0113
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCc-eEee
Q 044020 519 DKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADI-GLAM 557 (563)
Q Consensus 519 ~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~v-giam 557 (563)
.|...+ ++. + .++++||..+|+.+-+.||+ +|.+
T Consensus 176 ~K~~~l---~~~-~-i~I~IGDs~~Di~aA~~AGi~~I~v 210 (237)
T PRK11009 176 TKTQWL---KKK-N-IRIFYGDSDNDITAAREAGARGIRI 210 (237)
T ss_pred CHHHHH---Hhc-C-CeEEEcCCHHHHHHHHHcCCcEEEE
Confidence 454433 333 4 48889999999999999998 4433
No 110
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.46 E-value=0.00037 Score=63.70 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=66.4
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.++++.|+++|++++++|+..... .....++|+......++.+.+. ......|+--..+.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~-------------~~~KP~~~~~~~~~ 150 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDV-------------GRGKPDPDIYLLAL 150 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCC-------------CCCCCCHHHHHHHH
Confidence 578999999999999999999999988777 6666668886533333332211 11122233333444
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
+.+... ...+++|||...|+.+-+.+|+-
T Consensus 151 ~~~~~~-~~~~~~vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 151 KKLGLK-PEECLFVDDSPAGIEAAKAAGMH 179 (183)
T ss_pred HHcCCC-cceEEEEcCCHHHHHHHHHcCCE
Confidence 444444 57899999999999999999983
No 111
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.46 E-value=0.00036 Score=70.56 Aligned_cols=96 Identities=19% Similarity=0.153 Sum_probs=74.5
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
.+.+++.+.++.|+++|+++.++|+.+...+..+.+.+|+......++.+.+.. .....|+--...+
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~-------------~~KP~Peifl~A~ 282 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVY-------------RGKPDPEMFIYAA 282 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCC-------------CCCCCHHHHHHHH
Confidence 367999999999999999999999999999999999999976555554444321 1122344444555
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
+.++.. .+.+++|||..+|+.+-+.||+-
T Consensus 283 ~~lgl~-Peecl~IGDS~~DIeAAk~AGm~ 311 (381)
T PLN02575 283 QLLNFI-PERCIVFGNSNQTVEAAHDARMK 311 (381)
T ss_pred HHcCCC-cccEEEEcCCHHHHHHHHHcCCE
Confidence 555544 68899999999999999999983
No 112
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.45 E-value=0.00027 Score=67.05 Aligned_cols=96 Identities=9% Similarity=0.010 Sum_probs=69.0
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
.+.|++.+.++.|+++|+++.++|+-+...+....+.+|+......++.+.+.. .....|+--..++
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~-------------~~KP~p~~~~~~~ 159 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFG-------------YPKEDQRLWQAVA 159 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCC-------------CCCCCHHHHHHHH
Confidence 578999999999999999999999988888888888899865333333332210 0112223223334
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
+.+.-. .+.+++|||+.+|+.+-+.||+.
T Consensus 160 ~~~~~~-p~~~l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 160 EHTGLK-AERTLFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred HHcCCC-hHHEEEEcCCHHHHHHHHHcCCe
Confidence 444433 47899999999999999999996
No 113
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.44 E-value=0.00033 Score=69.85 Aligned_cols=109 Identities=13% Similarity=0.007 Sum_probs=76.7
Q ss_pred cccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC-CCCceeechhhhcCCCCCCCcceeEEEecChhh
Q 044020 441 GIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT-SDGEAVEGPEFRNMSPADIIPKLQVMARSLPSD 519 (563)
Q Consensus 441 ~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~-~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~ 519 (563)
...+++.+++.+++++|++.|++++++||++...+..+.+.+|+.. ....++....... ..+.. .-.+..|+-
T Consensus 183 ~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~-----~~~~~-~~~kp~p~~ 256 (300)
T PHA02530 183 VKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMH-----FQREQ-GDKRPDDVV 256 (300)
T ss_pred cccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhh-----hcccC-CCCCCcHHH
Confidence 3567899999999999999999999999999999999999999874 2222211111000 00000 001334556
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 520 KHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 520 K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
+...++.+.......++||||..+|+.+-+.||+-.
T Consensus 257 ~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~ 292 (300)
T PHA02530 257 KEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLEC 292 (300)
T ss_pred HHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeE
Confidence 777776654421478999999999999999999853
No 114
>PRK11587 putative phosphatase; Provisional
Probab=97.43 E-value=0.00059 Score=64.52 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=71.0
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.++++.|+++|+++.++|+.+...+....+..|+.. ...++.+.+. -.....|+--...+
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~-~~~i~~~~~~-------------~~~KP~p~~~~~~~ 148 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPA-PEVFVTAERV-------------KRGKPEPDAYLLGA 148 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCC-ccEEEEHHHh-------------cCCCCCcHHHHHHH
Confidence 478999999999999999999999988777777777888743 2233333321 11123344444555
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCc-eEeec
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADI-GLAMG 558 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~v-giamg 558 (563)
+.+.-. .+++++|||+.+|+.+-+.||+ .|++.
T Consensus 149 ~~~g~~-p~~~l~igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 149 QLLGLA-PQECVVVEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred HHcCCC-cccEEEEecchhhhHHHHHCCCEEEEEC
Confidence 555544 5889999999999999999998 45553
No 115
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.41 E-value=0.00029 Score=64.63 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=64.2
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.++++.|+++|+++.++|+. ..+....+.+|+......++.+.+.. .....|+--..++
T Consensus 88 ~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~-------------~~kp~~~~~~~~~ 152 (185)
T TIGR02009 88 EVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVK-------------EGKPHPETFLLAA 152 (185)
T ss_pred CCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCC-------------CCCCChHHHHHHH
Confidence 58999999999999999999999997 66788888999865333333222110 0111122112233
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
+.+... .+.+++|||+.+|+.+-+.||+.
T Consensus 153 ~~~~~~-~~~~v~IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 153 ELLGVS-PNECVVFEDALAGVQAARAAGMF 181 (185)
T ss_pred HHcCCC-HHHeEEEeCcHhhHHHHHHCCCe
Confidence 333322 36799999999999999999984
No 116
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.38 E-value=0.00017 Score=65.16 Aligned_cols=98 Identities=19% Similarity=0.254 Sum_probs=71.7
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
.++.+++.+++++|+++|++++++|+.+........+.+|+......++...+.. .....|+--..+
T Consensus 76 ~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~-------------~~Kp~~~~~~~~ 142 (176)
T PF13419_consen 76 LQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVG-------------SRKPDPDAYRRA 142 (176)
T ss_dssp EEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSS-------------SSTTSHHHHHHH
T ss_pred cchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhh-------------hhhhHHHHHHHH
Confidence 3488999999999999999999999999999999999999875333333332211 011122333445
Q ss_pred HHHHHHhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 524 VTQLRNTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
++.+.-. ++.+++|||+..|+.+-+.+|+--
T Consensus 143 ~~~~~~~-p~~~~~vgD~~~d~~~A~~~G~~~ 173 (176)
T PF13419_consen 143 LEKLGIP-PEEILFVGDSPSDVEAAKEAGIKT 173 (176)
T ss_dssp HHHHTSS-GGGEEEEESSHHHHHHHHHTTSEE
T ss_pred HHHcCCC-cceEEEEeCCHHHHHHHHHcCCeE
Confidence 5555444 578999999999999999999843
No 117
>PLN02940 riboflavin kinase
Probab=97.30 E-value=0.00052 Score=70.52 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=71.2
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH-HcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAK-ECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~-~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
++.|++.+.++.|+++|+++.|+|+.....+....+ ..|+......++.+.+. ......|+--..+
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v-------------~~~KP~p~~~~~a 159 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEV-------------EKGKPSPDIFLEA 159 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhc-------------CCCCCCHHHHHHH
Confidence 367999999999999999999999999888877766 67886544445444432 1112334444455
Q ss_pred HHHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 524 VTQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
++.+... .+++++|||+.+|+.+-+.||+.
T Consensus 160 ~~~lgv~-p~~~l~VGDs~~Di~aA~~aGi~ 189 (382)
T PLN02940 160 AKRLNVE-PSNCLVIEDSLPGVMAGKAAGME 189 (382)
T ss_pred HHHcCCC-hhHEEEEeCCHHHHHHHHHcCCE
Confidence 5555544 57899999999999999999985
No 118
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00075 Score=59.20 Aligned_cols=106 Identities=19% Similarity=0.198 Sum_probs=73.0
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC--CCceeechhhhcCCCCCCCcceeEEEe---cChhh
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTS--DGEAVEGPEFRNMSPADIIPKLQVMAR---SLPSD 519 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~--~~~~~~g~~~~~~~~~~~~~~~~v~~~---~~p~~ 519 (563)
.++|+-++.++.+++.+++++++|+....-..++.+.++=... ..-++..+..-+.. .+..+... .--.+
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~d-----g~h~i~~~~ds~fG~d 147 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHID-----GQHSIKYTDDSQFGHD 147 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCC-----CceeeecCCccccCCC
Confidence 3899999999999999999999999999999888888762110 00011110000000 00011111 11246
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEe
Q 044020 520 KHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556 (563)
Q Consensus 520 K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgia 556 (563)
|...++.+.+. .+.+.++|||..|+++-+.+|+-.|
T Consensus 148 K~~vI~~l~e~-~e~~fy~GDsvsDlsaaklsDllFA 183 (220)
T COG4359 148 KSSVIHELSEP-NESIFYCGDSVSDLSAAKLSDLLFA 183 (220)
T ss_pred cchhHHHhhcC-CceEEEecCCcccccHhhhhhhHhh
Confidence 99999999998 8899999999999999999887554
No 119
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.22 E-value=0.00072 Score=63.09 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=63.9
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.++++.|+++|+++.++|+-... +....+.+|+......++...+. -.....|+--..++
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~-------------~~~KP~~~~~~~~~ 170 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEV-------------GAEKPDPKIFQEAL 170 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeeccc-------------CCCCCCHHHHHHHH
Confidence 57899999999999999999999986654 57788888886533333222211 00112222223334
Q ss_pred HHHHHhcCCEEEEEcCCc-cCHHHHhhCCce
Q 044020 525 TQLRNTFGEVVAVTGDGT-NDASALHEADIG 554 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~-ND~~~l~~a~vg 554 (563)
+.+... .+++++|||+. +|+.+-+.||+-
T Consensus 171 ~~~~~~-~~~~~~IgD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 171 ERAGIS-PEEALHIGDSLRNDYQGARAAGWR 200 (203)
T ss_pred HHcCCC-hhHEEEECCCchHHHHHHHHcCCe
Confidence 444333 47899999997 899999998874
No 120
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.22 E-value=0.0019 Score=58.19 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=73.2
Q ss_pred eEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCC-CHHHHHHHHHHcCCC---------CCCCceeechhhhcCCCCC
Q 044020 435 TLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGD-NINTARAIAKECGIL---------TSDGEAVEGPEFRNMSPAD 504 (563)
Q Consensus 435 ~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd-~~~~a~~~a~~lgi~---------~~~~~~~~g~~~~~~~~~~ 504 (563)
.......-+-++.|++.+.++.|+++|+++.++|+. ....+..+.+.+|+. .....+
T Consensus 35 ~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~i------------- 101 (174)
T TIGR01685 35 IIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDR------------- 101 (174)
T ss_pred eEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceee-------------
Confidence 455555566678999999999999999999999987 888999999999986 211111
Q ss_pred CCcceeEEEecChhhH--HHHHHHHHHhc-----CCEEEEEcCCccCHHHHhhCCceEe
Q 044020 505 IIPKLQVMARSLPSDK--HTLVTQLRNTF-----GEVVAVTGDGTNDASALHEADIGLA 556 (563)
Q Consensus 505 ~~~~~~v~~~~~p~~K--~~~v~~l~~~~-----g~~v~~iGDg~ND~~~l~~a~vgia 556 (563)
+.++..+..| ..+.+.+.+.+ .+++++|||...|+.+-++||+-++
T Consensus 102 ------v~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i 154 (174)
T TIGR01685 102 ------IEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSC 154 (174)
T ss_pred ------eeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEE
Confidence 1111111112 24455554321 3789999999999999999998543
No 121
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.17 E-value=0.00091 Score=59.33 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=60.6
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVT 525 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~ 525 (563)
..+++.+.++.|+++|+++.++|+.....+....+.. +......++...+ +.....|+--..+++
T Consensus 65 ~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~--------------~~~Kp~~~~~~~~~~ 129 (154)
T TIGR01549 65 YIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDE--------------FGAKPEPEIFLAALE 129 (154)
T ss_pred eccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCC--------------CCCCcCHHHHHHHHH
Confidence 4478999999999999999999999999998888876 4432222221111 111222333333344
Q ss_pred HHHHhcCCEEEEEcCCccCHHHHhhCC
Q 044020 526 QLRNTFGEVVAVTGDGTNDASALHEAD 552 (563)
Q Consensus 526 ~l~~~~g~~v~~iGDg~ND~~~l~~a~ 552 (563)
.+... . .+++|||+.+|+.+-+.||
T Consensus 130 ~~~~~-~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 130 SLGLP-P-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred HcCCC-C-CEEEEeCCHHHHHHHHHcc
Confidence 44333 4 8999999999999988875
No 122
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.12 E-value=0.0014 Score=64.61 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=66.5
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCC--ceeechhhhcCCCCCCCcceeEEEecChhhHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDG--EAVEGPEFRNMSPADIIPKLQVMARSLPSDKHT 522 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~--~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~ 522 (563)
++.|++.+.++.|++.|+++.++|+.+......+.+.++...... .++.+.+. -.....|+--..
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-------------~~~KP~p~~~~~ 210 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDV-------------PKKKPDPDIYNL 210 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEecccc-------------CCCCCCHHHHHH
Confidence 478999999999999999999999998888887777664221100 11122110 011222333344
Q ss_pred HHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEe
Q 044020 523 LVTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556 (563)
Q Consensus 523 ~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgia 556 (563)
+++.+... ++.+++|||+.+|+.+-+.||+.+.
T Consensus 211 a~~~~~~~-p~~~l~IGDs~~Di~aA~~aG~~~i 243 (286)
T PLN02779 211 AAETLGVD-PSRCVVVEDSVIGLQAAKAAGMRCI 243 (286)
T ss_pred HHHHhCcC-hHHEEEEeCCHHhHHHHHHcCCEEE
Confidence 55555443 5789999999999999999998544
No 123
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.11 E-value=0.0014 Score=69.34 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=68.8
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.+.++.|+++|+++.++|+.+...+....+.+|+......++.+.+. .....|+.-...+
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v--------------~~~~kP~~~~~al 395 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQI--------------NSLNKSDLVKSIL 395 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCC--------------CCCCCcHHHHHHH
Confidence 58899999999999999999999999999999999999997644444444331 1112233222222
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCc
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADI 553 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~v 553 (563)
+.+ . .+.+++|||+.+|+.+-+.||+
T Consensus 396 ~~l--~-~~~~v~VGDs~~Di~aAk~AG~ 421 (459)
T PRK06698 396 NKY--D-IKEAAVVGDRLSDINAAKDNGL 421 (459)
T ss_pred Hhc--C-cceEEEEeCCHHHHHHHHHCCC
Confidence 222 1 4689999999999999999998
No 124
>PRK06769 hypothetical protein; Validated
Probab=97.08 E-value=0.0015 Score=59.13 Aligned_cols=95 Identities=15% Similarity=-0.041 Sum_probs=59.7
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHH--------HHHHHHHHcCCCCCCCcee-echhhhcCCCCCCCcceeEEEecC
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNIN--------TARAIAKECGILTSDGEAV-EGPEFRNMSPADIIPKLQVMARSL 516 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~--------~a~~~a~~lgi~~~~~~~~-~g~~~~~~~~~~~~~~~~v~~~~~ 516 (563)
+.|++.+++++|++.|+++.++|+.+.. ......+.+|+........ .+++. -.....
T Consensus 29 ~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-------------~~~KP~ 95 (173)
T PRK06769 29 LFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGC-------------ECRKPS 95 (173)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCC-------------CCCCCC
Confidence 6899999999999999999999987631 2333455666653000000 00000 001222
Q ss_pred hhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 517 PSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 517 p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
|+--..+++.+... .+.+++|||+.+|+.+-+.||+-
T Consensus 96 p~~~~~~~~~l~~~-p~~~i~IGD~~~Di~aA~~aGi~ 132 (173)
T PRK06769 96 TGMLLQAAEKHGLD-LTQCAVIGDRWTDIVAAAKVNAT 132 (173)
T ss_pred HHHHHHHHHHcCCC-HHHeEEEcCCHHHHHHHHHCCCe
Confidence 33334445544433 47899999999999999999984
No 125
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.06 E-value=0.0011 Score=59.09 Aligned_cols=93 Identities=24% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCC---------------CHHHHHHHHHHcCCCCCCCceee----chhhhcCCCCCC
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGD---------------NINTARAIAKECGILTSDGEAVE----GPEFRNMSPADI 505 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd---------------~~~~a~~~a~~lgi~~~~~~~~~----g~~~~~~~~~~~ 505 (563)
++-+++.++|++|+++|++++++|.- ....+..+.+.+|+. ....++. ..+
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~-fd~ii~~~~~~~~~--------- 98 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII-FDDVLICPHFPDDN--------- 98 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc-eeEEEECCCCCCCC---------
Confidence 46789999999999999999999985 244667788888885 1111111 000
Q ss_pred CcceeEEEecChhhHHHHHHHHHHhc---CCEEEEEcCCccCHHHHhhCCceE
Q 044020 506 IPKLQVMARSLPSDKHTLVTQLRNTF---GEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 506 ~~~~~v~~~~~p~~K~~~v~~l~~~~---g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
...+ .| +..+++.+.+.+ .+++++|||+.+|+.+-+.+|+..
T Consensus 99 -----~~~~-KP--~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~ 143 (161)
T TIGR01261 99 -----CDCR-KP--KIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRG 143 (161)
T ss_pred -----CCCC-CC--CHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeE
Confidence 0000 12 223333333332 367999999999999999999843
No 126
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.02 E-value=0.0026 Score=59.61 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=59.1
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHH---HHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEec-C---
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINT---ARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARS-L--- 516 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~---a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~-~--- 516 (563)
-+.-|++.++++.|+++|++|+++|||+... +..-.++.|+..... ++-|- .
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~---------------------LiLR~~~d~~ 177 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKH---------------------LILRGLEDSN 177 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCe---------------------eeecCCCCCC
Confidence 4678999999999999999999999999765 566667788764221 22221 0
Q ss_pred ---hhhHHHHHHHHHHhcC-CEEEEEcCCccCHH
Q 044020 517 ---PSDKHTLVTQLRNTFG-EVVAVTGDGTNDAS 546 (563)
Q Consensus 517 ---p~~K~~~v~~l~~~~g-~~v~~iGDg~ND~~ 546 (563)
..-|...-+.+.+. | ..++.+||..+|+.
T Consensus 178 ~~~~~yKs~~R~~l~~~-GYrIv~~iGDq~sDl~ 210 (229)
T TIGR01675 178 KTVVTYKSEVRKSLMEE-GYRIWGNIGDQWSDLL 210 (229)
T ss_pred chHhHHHHHHHHHHHhC-CceEEEEECCChHHhc
Confidence 11266666666666 6 57899999999984
No 127
>PLN02580 trehalose-phosphatase
Probab=97.00 E-value=0.0028 Score=64.06 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=39.2
Q ss_pred EecCh---hhHHHHHHHHHHhcC---C---EEEEEcCCccCHHHHhh-----CCceEeecCCCC
Q 044020 513 ARSLP---SDKHTLVTQLRNTFG---E---VVAVTGDGTNDASALHE-----ADIGLAMGIAGT 562 (563)
Q Consensus 513 ~~~~p---~~K~~~v~~l~~~~g---~---~v~~iGDg~ND~~~l~~-----a~vgiamg~~~~ 562 (563)
.++.| .+|+..++.+.+++| . .++++||+.||..||+. +++||+|| +|.
T Consensus 292 lEVrP~~g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~I~Vg-n~~ 354 (384)
T PLN02580 292 LEVRPVIDWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILVS-SVP 354 (384)
T ss_pred EEEecCCCCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceEEEEe-cCC
Confidence 34555 389999999988765 1 24899999999999996 69999999 653
No 128
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.99 E-value=0.0019 Score=58.30 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=61.7
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCC-HHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecCh--hhHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDN-INTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLP--SDKH 521 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~-~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p--~~K~ 521 (563)
.+.+++.++++.|++.|++++++|+.+ ...+..+++.+|+.. .+....| +--.
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~------------------------~~~~~KP~p~~~~ 98 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPV------------------------LPHAVKPPGCAFR 98 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEE------------------------EcCCCCCChHHHH
Confidence 578999999999999999999999988 677788888888742 1111222 2222
Q ss_pred HHHHHHHHhcCCEEEEEcCCc-cCHHHHhhCCc
Q 044020 522 TLVTQLRNTFGEVVAVTGDGT-NDASALHEADI 553 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg~-ND~~~l~~a~v 553 (563)
.+++.+... .+.+++|||.. .|+.+-+.+|+
T Consensus 99 ~~l~~~~~~-~~~~l~IGDs~~~Di~aA~~aGi 130 (170)
T TIGR01668 99 RAHPEMGLT-SEQVAVVGDRLFTDVMGGNRNGS 130 (170)
T ss_pred HHHHHcCCC-HHHEEEECCcchHHHHHHHHcCC
Confidence 333333322 46799999998 79999999998
No 129
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.98 E-value=0.0018 Score=61.38 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=68.1
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.+++++|++. ++++++|+.....+....+++|+......++...+.. .....|+--...+
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~-------------~~KP~~~~~~~~~ 162 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAG-------------IQKPDKEIFNYAL 162 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccC-------------CCCCCHHHHHHHH
Confidence 5789999999999999 9999999999999999999999876433333332210 1112232233444
Q ss_pred HHH-HHhcCCEEEEEcCCc-cCHHHHhhCCc
Q 044020 525 TQL-RNTFGEVVAVTGDGT-NDASALHEADI 553 (563)
Q Consensus 525 ~~l-~~~~g~~v~~iGDg~-ND~~~l~~a~v 553 (563)
+.+ .-. .+++++|||+. +|+.+-+.+|+
T Consensus 163 ~~~~~~~-~~~~v~igD~~~~di~~A~~~G~ 192 (224)
T TIGR02254 163 ERMPKFS-KEEVLMIGDSLTADIKGGQNAGL 192 (224)
T ss_pred HHhcCCC-chheEEECCCcHHHHHHHHHCCC
Confidence 444 333 47899999998 89999999997
No 130
>PRK09449 dUMP phosphatase; Provisional
Probab=96.96 E-value=0.0023 Score=60.73 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=66.3
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.++++.|+ +|+++.++|+.....+....+.+|+......++.+.+.. .....|+--..++
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~-------------~~KP~p~~~~~~~ 160 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVG-------------VAKPDVAIFDYAL 160 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccC-------------CCCCCHHHHHHHH
Confidence 37899999999999 689999999998888888899999865333333332210 1112222223344
Q ss_pred HHHHHhcCCEEEEEcCCc-cCHHHHhhCCce
Q 044020 525 TQLRNTFGEVVAVTGDGT-NDASALHEADIG 554 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~-ND~~~l~~a~vg 554 (563)
+.+.....+.+++|||+. +|+.+-+.||+-
T Consensus 161 ~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~ 191 (224)
T PRK09449 161 EQMGNPDRSRVLMVGDNLHSDILGGINAGID 191 (224)
T ss_pred HHcCCCCcccEEEEcCCcHHHHHHHHHCCCc
Confidence 444321125799999998 799999999984
No 131
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.96 E-value=0.0055 Score=55.54 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=34.9
Q ss_pred chHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 449 GVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 449 ~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
.+...+.+|+++|++|+++|.........+-+.+|+..
T Consensus 27 pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~ 64 (274)
T COG3769 27 PAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG 64 (274)
T ss_pred ccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC
Confidence 36678999999999999999999999999999999874
No 132
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.89 E-value=0.0026 Score=55.96 Aligned_cols=90 Identities=23% Similarity=0.309 Sum_probs=61.3
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCH---------------HHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcce
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNI---------------NTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKL 509 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~---------------~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~ 509 (563)
++.|++.++++.|+++|+++.++|+.+. ..+....+.+|+.... .
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~------------------ 86 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDG--V------------------ 86 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeE--E------------------
Confidence 4789999999999999999999998762 4566777888875210 0
Q ss_pred eEEEe------c-ChhhHHHHHHHHHHhcC---CEEEEEcCCccCHHHHhhCCceE
Q 044020 510 QVMAR------S-LPSDKHTLVTQLRNTFG---EVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 510 ~v~~~------~-~p~~K~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
++.. . ....+.++.+...+.++ +++++|||...|+.+-+.+|+-.
T Consensus 87 -~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 87 -LFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAA 141 (147)
T ss_pred -EECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCE
Confidence 1110 0 01122333333333333 78999999999999999999843
No 133
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=96.86 E-value=0.0047 Score=58.10 Aligned_cols=98 Identities=12% Similarity=0.169 Sum_probs=67.4
Q ss_pred ccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHc---CCCCCCCceeechhhhcCCCCCCCcceeEEEecChh
Q 044020 442 IKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKEC---GILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPS 518 (563)
Q Consensus 442 ~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~l---gi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~ 518 (563)
++-++.+++.+++++|+++|+++.++|..+......+.+.. ++.......++ ..+.....|+
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd---------------~~~g~KP~p~ 156 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFD---------------TTVGLKTEAQ 156 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEE---------------eCcccCCCHH
Confidence 34568999999999999999999999999888777777665 23221111110 0011122334
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 519 DKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 519 ~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
--..+++.+... .+.++++||...|+.+-+.||+-.
T Consensus 157 ~y~~i~~~lgv~-p~e~lfVgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 157 SYVKIAGQLGSP-PREILFLSDIINELDAARKAGLHT 192 (220)
T ss_pred HHHHHHHHhCcC-hhHEEEEeCCHHHHHHHHHcCCEE
Confidence 344555555544 578999999999999999999954
No 134
>PLN02423 phosphomannomutase
Probab=96.84 E-value=0.004 Score=59.89 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhcCCEEEEEcC----CccCHHHHhh-CCceEeec
Q 044020 519 DKHTLVTQLRNTFGEVVAVTGD----GTNDASALHE-ADIGLAMG 558 (563)
Q Consensus 519 ~K~~~v~~l~~~~g~~v~~iGD----g~ND~~~l~~-a~vgiamg 558 (563)
.|+..++.|+ . .++|+++|| +.||++||+. .-.|+++-
T Consensus 189 nKg~al~~L~-~-~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~ 231 (245)
T PLN02423 189 DKTYCLQFLE-D-FDEIHFFGDKTYEGGNDHEIFESERTIGHTVT 231 (245)
T ss_pred CHHHHHHHhc-C-cCeEEEEeccCCCCCCcHHHHhCCCcceEEeC
Confidence 5888888888 5 789999999 8999999997 44588764
No 135
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.84 E-value=0.0046 Score=56.49 Aligned_cols=99 Identities=18% Similarity=0.102 Sum_probs=59.8
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCH---------------HHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcce
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNI---------------NTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKL 509 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~---------------~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~ 509 (563)
.+.|++.+++++|+++|+++.++|..+. .......+.+|+.- . .++...... ...
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f-~-~i~~~~~~~--------~~~ 98 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRL-D-GIYYCPHHP--------EDG 98 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCcc-c-eEEECCCCC--------CCC
Confidence 3679999999999999999999998762 22233445556521 1 111100000 000
Q ss_pred eEEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 510 QVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 510 ~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
.-.....|+--..+++.+... .+++++|||+.+|+.+-+.||+.
T Consensus 99 ~~~~KP~p~~~~~~~~~l~~~-~~~~~~VgDs~~Di~~A~~aG~~ 142 (181)
T PRK08942 99 CDCRKPKPGMLLSIAERLNID-LAGSPMVGDSLRDLQAAAAAGVT 142 (181)
T ss_pred CcCCCCCHHHHHHHHHHcCCC-hhhEEEEeCCHHHHHHHHHCCCe
Confidence 001122333334455555443 57899999999999999999983
No 136
>PLN02811 hydrolase
Probab=96.81 E-value=0.0035 Score=59.33 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=61.6
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHH-HHHHHcCCCCCCCceeech--hhhcCCCCCCCcceeEEEecChhhHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTAR-AIAKECGILTSDGEAVEGP--EFRNMSPADIIPKLQVMARSLPSDKH 521 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~-~~a~~lgi~~~~~~~~~g~--~~~~~~~~~~~~~~~v~~~~~p~~K~ 521 (563)
++.|++.++|+.|+++|+++.++||-...... ...+..++......++.+. +. -.....|+--.
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~-------------~~~KP~p~~~~ 144 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEV-------------KQGKPAPDIFL 144 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhc-------------cCCCCCcHHHH
Confidence 47899999999999999999999997765333 2333334433222233322 11 01122333334
Q ss_pred HHHHHHH---HhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 522 TLVTQLR---NTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 522 ~~v~~l~---~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
..++.+. .. .+.+++|||+..|+.+-+.||+-
T Consensus 145 ~a~~~~~~~~~~-~~~~v~IgDs~~di~aA~~aG~~ 179 (220)
T PLN02811 145 AAARRFEDGPVD-PGKVLVFEDAPSGVEAAKNAGMS 179 (220)
T ss_pred HHHHHhCCCCCC-ccceEEEeccHhhHHHHHHCCCe
Confidence 4455543 22 47899999999999999999984
No 137
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.73 E-value=0.0097 Score=57.42 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=60.1
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHH---HHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhh
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNIN---TARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSD 519 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~---~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~ 519 (563)
..++-|++.+.++.|++.|++++++|+|... .+....++.|+..... -.++.+-....
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~-------------------d~lllr~~~~~ 176 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADE-------------------EHLLLKKDKSS 176 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCc-------------------ceEEeCCCCCC
Confidence 3457899999999999999999999999843 4556777888864110 01333322234
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCccCHHHHh
Q 044020 520 KHTLVTQLRNTFGEVVAVTGDGTNDASALH 549 (563)
Q Consensus 520 K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~ 549 (563)
|..-.+.+.+. -..+++|||..+|.....
T Consensus 177 K~~rr~~I~~~-y~Ivl~vGD~~~Df~~~~ 205 (266)
T TIGR01533 177 KESRRQKVQKD-YEIVLLFGDNLLDFDDFF 205 (266)
T ss_pred cHHHHHHHHhc-CCEEEEECCCHHHhhhhh
Confidence 55555555544 467999999999997643
No 138
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.73 E-value=0.004 Score=55.90 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=59.7
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHH------------HHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEE
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNIN------------TARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMA 513 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~------------~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 513 (563)
+-|++.+++++|+++|+++.++|..+.. .+..+.+.+|+.. ..++.+... ...
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~~ii~~~~~-------------~~~ 107 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--QVLAATHAG-------------LYR 107 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--EEEEecCCC-------------CCC
Confidence 3589999999999999999999975542 4567888998853 111111100 001
Q ss_pred ecChhhHHHHHHHHH--HhcCCEEEEEcCCc--------cCHHHHhhCCceE
Q 044020 514 RSLPSDKHTLVTQLR--NTFGEVVAVTGDGT--------NDASALHEADIGL 555 (563)
Q Consensus 514 ~~~p~~K~~~v~~l~--~~~g~~v~~iGDg~--------ND~~~l~~a~vgi 555 (563)
...|+--..+++.+. -. .+++++|||.. +|+.+-+.||+-.
T Consensus 108 KP~p~~~~~~~~~~~~~~~-~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 108 KPMTGMWEYLQSQYNSPIK-MTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CCccHHHHHHHHHcCCCCC-chhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 111222223333333 22 36899999986 6999999988754
No 139
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.73 E-value=0.0038 Score=53.41 Aligned_cols=88 Identities=9% Similarity=0.055 Sum_probs=58.9
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCC-CHHHHHHHHHHcC-------CCCCCCceeechhhhcCCCCCCCcceeEEEecC
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGD-NINTARAIAKECG-------ILTSDGEAVEGPEFRNMSPADIIPKLQVMARSL 516 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd-~~~~a~~~a~~lg-------i~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 516 (563)
++.+++.+.++.|+++|+++.++|+. ....+..+.+..+ +......++.+.. ...
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~-----------------~pk 91 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYW-----------------LPK 91 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCC-----------------CcH
Confidence 68899999999999999999999999 7877778778777 3221111111100 011
Q ss_pred hhhHHHHHHHHH--HhcCCEEEEEcCCccCHHHHhh
Q 044020 517 PSDKHTLVTQLR--NTFGEVVAVTGDGTNDASALHE 550 (563)
Q Consensus 517 p~~K~~~v~~l~--~~~g~~v~~iGDg~ND~~~l~~ 550 (563)
|+.-..+++.+. -. .+.+++|||...|+..++.
T Consensus 92 p~~~~~a~~~lg~~~~-p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 92 SPRLVEIALKLNGVLK-PKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred HHHHHHHHHHhcCCCC-cceEEEECCCHhHHHHHHh
Confidence 232234444444 33 4899999999999877653
No 140
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.67 E-value=0.0079 Score=56.76 Aligned_cols=104 Identities=21% Similarity=0.292 Sum_probs=69.9
Q ss_pred CCCcchHHHHHHH--HhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCC-CCCcceeEEEecCh--hh
Q 044020 445 PVRPGVKEAVQTC--LEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPA-DIIPKLQVMARSLP--SD 519 (563)
Q Consensus 445 ~~~~~~~~~I~~l--~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~-~~~~~~~v~~~~~p--~~ 519 (563)
|+.|+.+++++.+ ++.|+.++|+|.-+..-...+.+.-|+......+++.+..-+-... .+.+-..--|..-| .=
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmC 150 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMC 150 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccc
Confidence 4889999999999 5689999999999999999999999997654444443221111100 00000000122223 24
Q ss_pred HHHHHHHHHHhc---C---CEEEEEcCCccCHHHH
Q 044020 520 KHTLVTQLRNTF---G---EVVAVTGDGTNDASAL 548 (563)
Q Consensus 520 K~~~v~~l~~~~---g---~~v~~iGDg~ND~~~l 548 (563)
|..+++.+.... | ..|++||||.||....
T Consensus 151 K~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~ 185 (234)
T PF06888_consen 151 KGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPA 185 (234)
T ss_pred hHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcc
Confidence 888888887651 3 6899999999998654
No 141
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.66 E-value=0.0021 Score=56.64 Aligned_cols=97 Identities=13% Similarity=-0.045 Sum_probs=67.1
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC-CCceeechhhhcCCCCCCCcceeEEEecChhhHH
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTS-DGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKH 521 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~-~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~ 521 (563)
.-.++|++.+.++.|+ .++++.++|+-+...+..+.+.+++... ...++.+.+... ..|. -.
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~---------------~KP~-~~ 105 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVF---------------VKGK-YV 105 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccc---------------cCCe-Ee
Confidence 3357999999999999 5799999999999999999999988532 122333222110 1121 11
Q ss_pred HHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEee
Q 044020 522 TLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAM 557 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiam 557 (563)
+.++.+... .+.+++|||..+|+.+-+.+++-|..
T Consensus 106 k~l~~l~~~-p~~~i~i~Ds~~~~~aa~~ngI~i~~ 140 (148)
T smart00577 106 KDLSLLGRD-LSNVIIIDDSPDSWPFHPENLIPIKP 140 (148)
T ss_pred ecHHHcCCC-hhcEEEEECCHHHhhcCccCEEEecC
Confidence 223333333 57899999999999998888776643
No 142
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.60 E-value=0.0062 Score=52.96 Aligned_cols=85 Identities=19% Similarity=0.261 Sum_probs=65.3
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhH--H
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDK--H 521 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K--~ 521 (563)
.+..|+.++.+..++++|++++++|.-++..+..+++.+|++- ++--..|-.+ .
T Consensus 45 ~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f------------------------i~~A~KP~~~~fr 100 (175)
T COG2179 45 PDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF------------------------IYRAKKPFGRAFR 100 (175)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce------------------------eecccCccHHHHH
Confidence 4478999999999999999999999999999999999999974 4444445433 2
Q ss_pred HHHHHHHHhcCCEEEEEcCC-ccCHHHHhhCCc
Q 044020 522 TLVTQLRNTFGEVVAVTGDG-TNDASALHEADI 553 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg-~ND~~~l~~a~v 553 (563)
+.++.++-. .++|+||||. ..|+.+-..+|+
T Consensus 101 ~Al~~m~l~-~~~vvmVGDqL~TDVlggnr~G~ 132 (175)
T COG2179 101 RALKEMNLP-PEEVVMVGDQLFTDVLGGNRAGM 132 (175)
T ss_pred HHHHHcCCC-hhHEEEEcchhhhhhhcccccCc
Confidence 344444433 5899999998 458877666665
No 143
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.54 E-value=0.0082 Score=67.69 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=33.4
Q ss_pred CCCCcchHHHHHHH-HhCCCeEEEEcCCCHHHHHHHHHHc
Q 044020 444 DPVRPGVKEAVQTC-LEAGITVRMVTGDNINTARAIAKEC 482 (563)
Q Consensus 444 d~~~~~~~~~I~~l-~~~gi~v~i~TGd~~~~a~~~a~~l 482 (563)
-.+.+++.+++++| ++.|+.|+++|||+..........+
T Consensus 615 ~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~~ 654 (854)
T PLN02205 615 KSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSPC 654 (854)
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCCC
Confidence 35678999999997 7889999999999999998887543
No 144
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.50 E-value=0.012 Score=53.60 Aligned_cols=105 Identities=15% Similarity=0.054 Sum_probs=57.4
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCH---------------HHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCccee
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNI---------------NTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQ 510 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~---------------~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~ 510 (563)
+.|++.++|++|+++|+++.++|.-+. .....+..+.++.- ............. ..+....
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~~~---~~~~~~~ 102 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDL-DGIYYCPHHPEGV---EEFRQVC 102 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCc-cEEEECCCCCccc---ccccCCC
Confidence 578999999999999999999998663 12223444444431 0000000000000 0000000
Q ss_pred EEEecChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 511 VMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 511 v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
-.....|+--..+++.+... ...++||||..+|+.+-+.||+..
T Consensus 103 ~~~KP~p~~~~~a~~~~~~~-~~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 103 DCRKPKPGMLLQARKELHID-MAQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred CCCCCCHHHHHHHHHHcCcC-hhhEEEEcCCHHHHHHHHHCCCcE
Confidence 00111222223333433333 478999999999999999999853
No 145
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.46 E-value=0.003 Score=59.29 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=59.3
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHH--HHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHH
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINT--ARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKH 521 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~--a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~ 521 (563)
-++.|++.++++.|+++|+++.++|...... ........++......++...+. -.....|+--.
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~-------------~~~KP~p~~~~ 159 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLE-------------GLRKPDPRIYQ 159 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeec-------------CCCCCCHHHHH
Confidence 3578999999999999999999999865432 33333334443322222211110 00112233223
Q ss_pred HHHHHHHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 522 TLVTQLRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
.+++.+... ++.+++|||...|+.+-+.+|+-
T Consensus 160 ~~~~~~g~~-~~~~l~i~D~~~di~aA~~aG~~ 191 (211)
T TIGR02247 160 LMLERLGVA-PEECVFLDDLGSNLKPAAALGIT 191 (211)
T ss_pred HHHHHcCCC-HHHeEEEcCCHHHHHHHHHcCCE
Confidence 444444433 47799999999999999999983
No 146
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.43 E-value=0.0075 Score=55.40 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=65.0
Q ss_pred CcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHH
Q 044020 447 RPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQ 526 (563)
Q Consensus 447 ~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~ 526 (563)
.| ..+.+..|++. +++.++|+.+...+....+.+|+......++...+.. .....|+--..+++.
T Consensus 90 ~~-~~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~-------------~~KP~p~~~~~~~~~ 154 (188)
T PRK10725 90 LP-LIEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQ-------------HHKPAPDTFLRCAQL 154 (188)
T ss_pred cc-HHHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhcc-------------CCCCChHHHHHHHHH
Confidence 34 46889999876 8999999999999999999999876444444433311 112233333444444
Q ss_pred HHHhcCCEEEEEcCCccCHHHHhhCCce
Q 044020 527 LRNTFGEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 527 l~~~~g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
++.. ...+++|||..+|+.+-+.||+-
T Consensus 155 ~~~~-~~~~l~igDs~~di~aA~~aG~~ 181 (188)
T PRK10725 155 MGVQ-PTQCVVFEDADFGIQAARAAGMD 181 (188)
T ss_pred cCCC-HHHeEEEeccHhhHHHHHHCCCE
Confidence 4433 46789999999999999999984
No 147
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=96.31 E-value=0.029 Score=54.15 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=42.8
Q ss_pred EEecccCCCCcchHHHHHHHHhCCCeEEEEcC---CCHHHHHHHHHHcCCCCC
Q 044020 438 AVVGIKDPVRPGVKEAVQTCLEAGITVRMVTG---DNINTARAIAKECGILTS 487 (563)
Q Consensus 438 G~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TG---d~~~~a~~~a~~lgi~~~ 487 (563)
|++.-.+.+-+++.++|++|+++|++++++|| |+........+++|+...
T Consensus 10 Gtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~ 62 (249)
T TIGR01457 10 GTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPAT 62 (249)
T ss_pred CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 55555677778999999999999999999995 889999999999998653
No 148
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=96.29 E-value=0.01 Score=56.17 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=82.6
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
.++.|++.+.++.|+++|+.+.++|+.+...+..+.+.+|+......++.+.+.. -....|+--...
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~-------------~~KP~Pd~yL~A 151 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVA-------------RGKPAPDIYLLA 151 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHh-------------cCCCCCHHHHHH
Confidence 4688999999999999999999999999999999999999988766666666542 224567777777
Q ss_pred HHHHHHhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 524 VTQLRNTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
.+.|... +.++++|.|+.+.+.+-++||.-+
T Consensus 152 a~~Lgv~-P~~CvviEDs~~Gi~Aa~aAGm~v 182 (221)
T COG0637 152 AERLGVD-PEECVVVEDSPAGIQAAKAAGMRV 182 (221)
T ss_pred HHHcCCC-hHHeEEEecchhHHHHHHHCCCEE
Confidence 7777655 789999999999999999999844
No 149
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.26 E-value=0.0085 Score=55.67 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=60.7
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH-cCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKE-CGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~-lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
++.|++.++++.|+++|+++.++|.-+.......... .++......++...+.. .....|+--..+
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~-------------~~KP~p~~~~~~ 150 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLG-------------MRKPEARIYQHV 150 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccC-------------CCCCCHHHHHHH
Confidence 3689999999999999999999999876654443322 23332111222211110 011222222344
Q ss_pred HHHHHHhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 524 VTQLRNTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
++.+... .+.+++|||...|+.+-+.+|+..
T Consensus 151 ~~~~~~~-p~~~l~vgD~~~di~aA~~aG~~~ 181 (199)
T PRK09456 151 LQAEGFS-AADAVFFDDNADNIEAANALGITS 181 (199)
T ss_pred HHHcCCC-hhHeEEeCCCHHHHHHHHHcCCEE
Confidence 4444433 478999999999999999999843
No 150
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.23 E-value=0.0082 Score=56.80 Aligned_cols=95 Identities=11% Similarity=0.117 Sum_probs=66.8
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCC-CceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSD-GEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~-~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
++.+++.++++.| ++++.++|+.+...+....+.+|+.... ..++.+.+.. .....|+--..+
T Consensus 88 ~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~-------------~~KP~p~~~~~a 151 (221)
T PRK10563 88 EPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQ-------------RWKPDPALMFHA 151 (221)
T ss_pred CcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcC-------------CCCCChHHHHHH
Confidence 4668999999998 4899999999988899999999987533 2333333211 011223333444
Q ss_pred HHHHHHhcCCEEEEEcCCccCHHHHhhCCceEe
Q 044020 524 VTQLRNTFGEVVAVTGDGTNDASALHEADIGLA 556 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgia 556 (563)
++.+... .+.+++|||+.+|+.+-+.||+.+.
T Consensus 152 ~~~~~~~-p~~~l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 152 AEAMNVN-VENCILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred HHHcCCC-HHHeEEEeCcHhhHHHHHHCCCEEE
Confidence 4444433 4679999999999999999998765
No 151
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=96.19 E-value=0.013 Score=53.75 Aligned_cols=98 Identities=10% Similarity=0.024 Sum_probs=67.1
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.+++.+++++|+ .+++++|+.+...+....+.+|+......++...+...- .......|+--..++
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~---------~~~~KP~p~~~~~~~ 151 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPD---------YLLPKPSPQAYEKAL 151 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCc---------cCCCCCCHHHHHHHH
Confidence 37789999999997 478999999999999999999987543334333321100 000122333334445
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
+.+... ..++++|||...|+.+=+.+|+..
T Consensus 152 ~~~~~~-~~~~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 152 REAGVD-PERAIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred HHhCCC-ccceEEEeCCHHHHHHHHHcCCEE
Confidence 555444 578999999999999999999854
No 152
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.14 E-value=0.02 Score=54.97 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=61.2
Q ss_pred EEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHH--HHHHHcCCCC-CCCceeechhhhcCCCCCCCcceeEEEe
Q 044020 438 AVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTAR--AIAKECGILT-SDGEAVEGPEFRNMSPADIIPKLQVMAR 514 (563)
Q Consensus 438 G~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~--~~a~~lgi~~-~~~~~~~g~~~~~~~~~~~~~~~~v~~~ 514 (563)
|.+.-...+-|++.+++++|+++|+++.++|..+..... ...+++|+.. ....++...+.
T Consensus 17 G~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~----------------- 79 (242)
T TIGR01459 17 GVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEI----------------- 79 (242)
T ss_pred cccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHH-----------------
Confidence 566667788999999999999999999999986655444 6778899864 22222221110
Q ss_pred cChhhHHHHHHHHHHhc---CCEEEEEcCCccCHHHHhhCC
Q 044020 515 SLPSDKHTLVTQLRNTF---GEVVAVTGDGTNDASALHEAD 552 (563)
Q Consensus 515 ~~p~~K~~~v~~l~~~~---g~~v~~iGDg~ND~~~l~~a~ 552 (563)
.. ..++...+++ +..+.++||+..|...+..++
T Consensus 80 ----~~-~~l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~ 115 (242)
T TIGR01459 80 ----AV-QMILESKKRFDIRNGIIYLLGHLENDIINLMQCY 115 (242)
T ss_pred ----HH-HHHHhhhhhccCCCceEEEeCCcccchhhhcCCC
Confidence 01 2222222221 467899999888888775544
No 153
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.05 E-value=0.014 Score=53.07 Aligned_cols=139 Identities=20% Similarity=0.304 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHhHhHh--hhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCC-eEEEEcCCCH
Q 044020 396 RNITDVINGFASEALRTLCL--AFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGI-TVRMVTGDNI 472 (563)
Q Consensus 396 ~~i~~~~~~~~~~G~r~i~~--a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi-~v~i~TGd~~ 472 (563)
+.....++.|+++|.+.--+ .+|.+ |+.|+..++|+.+++.|- .++|+|--+.
T Consensus 57 e~M~rv~k~Lheqgv~~~~ik~~~r~i------------------------P~~Pgmv~lik~~ak~g~~eliIVSDaNs 112 (256)
T KOG3120|consen 57 ELMDRVFKELHEQGVRIAEIKQVLRSI------------------------PIVPGMVRLIKSAAKLGCFELIIVSDANS 112 (256)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhcC------------------------CCCccHHHHHHHHHhCCCceEEEEecCch
Confidence 45567778888888765433 22322 488999999999999996 9999999999
Q ss_pred HHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCccee--EEEecChhh--HHHHHHHHHHhc---C---CEEEEEcCCc
Q 044020 473 NTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQ--VMARSLPSD--KHTLVTQLRNTF---G---EVVAVTGDGT 542 (563)
Q Consensus 473 ~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~--v~~~~~p~~--K~~~v~~l~~~~---g---~~v~~iGDg~ 542 (563)
.....+.+..|+..-...+++.+..-+-...-.+.... --|...|.. |..++..++... | +++.++|||.
T Consensus 113 fFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~ 192 (256)
T KOG3120|consen 113 FFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGA 192 (256)
T ss_pred hHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCC
Confidence 99999999999854222222221111110000000000 112233443 777776666541 1 3899999999
Q ss_pred cCH-HHHhhCCceEeec
Q 044020 543 NDA-SALHEADIGLAMG 558 (563)
Q Consensus 543 ND~-~~l~~a~vgiamg 558 (563)
||. |+++...--+||-
T Consensus 193 nD~CP~l~Lr~~D~amp 209 (256)
T KOG3120|consen 193 NDFCPVLRLRACDVAMP 209 (256)
T ss_pred CCcCcchhcccCceecc
Confidence 996 4666666656664
No 154
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.96 E-value=0.019 Score=66.84 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=69.9
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC-CCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL-TSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~-~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
+.|++.+.++.|+++|+++.++|+.....+....+.+|+. .....++.+.+. -.....|+--...+
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~-------------~~~KP~Pe~~~~a~ 228 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAF-------------ENLKPAPDIFLAAA 228 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECccc-------------ccCCCCHHHHHHHH
Confidence 5799999999999999999999999999999999999985 323333333321 11122333334455
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhhCCc
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHEADI 553 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~a~v 553 (563)
+.+... .+.+++|||..+|+.+-+.||+
T Consensus 229 ~~lgv~-p~e~v~IgDs~~Di~AA~~aGm 256 (1057)
T PLN02919 229 KILGVP-TSECVVIEDALAGVQAARAAGM 256 (1057)
T ss_pred HHcCcC-cccEEEEcCCHHHHHHHHHcCC
Confidence 555544 5789999999999999999998
No 155
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=95.96 E-value=0.015 Score=47.40 Aligned_cols=90 Identities=23% Similarity=0.275 Sum_probs=56.2
Q ss_pred EEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHH---HHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEe
Q 044020 438 AVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINT---ARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMAR 514 (563)
Q Consensus 438 G~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~---a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~ 514 (563)
|++...+++-|++.++|+.|+++|++++++|..+..+ .....+.+|+...... ++.
T Consensus 7 Gvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~--------------------i~t- 65 (101)
T PF13344_consen 7 GVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDE--------------------IIT- 65 (101)
T ss_dssp TTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGG--------------------EEE-
T ss_pred cEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCE--------------------EEC-
Confidence 5556678889999999999999999999999876444 3444477887642211 221
Q ss_pred cChhhHHHHHHHHHH-hcCCEEEEEcCCccCHHHHhhCCc
Q 044020 515 SLPSDKHTLVTQLRN-TFGEVVAVTGDGTNDASALHEADI 553 (563)
Q Consensus 515 ~~p~~K~~~v~~l~~-~~g~~v~~iGDg~ND~~~l~~a~v 553 (563)
|. ....+++++ ..+..|.++|.. .....++.+|+
T Consensus 66 --s~--~~~~~~l~~~~~~~~v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 66 --SG--MAAAEYLKEHKGGKKVYVLGSD-GLREELREAGF 100 (101)
T ss_dssp --HH--HHHHHHHHHHTTSSEEEEES-H-HHHHHHHHTTE
T ss_pred --hH--HHHHHHHHhcCCCCEEEEEcCH-HHHHHHHHcCC
Confidence 11 123444544 236889999976 55666666654
No 156
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.92 E-value=0.022 Score=57.23 Aligned_cols=89 Identities=8% Similarity=0.076 Sum_probs=66.9
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH----cCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKE----CGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDK 520 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~----lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K 520 (563)
++.+++.++|+.|+++|+++.++|.-+...+..+.+. +++.... ......+..|
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f----------------------~~~~~~~~pk 88 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDF----------------------DARSINWGPK 88 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHe----------------------eEEEEecCch
Confidence 3578999999999999999999999999999999998 7765311 1111223445
Q ss_pred HHHHHHHHHhcC---CEEEEEcCCccCHHHHhhCCceE
Q 044020 521 HTLVTQLRNTFG---EVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 521 ~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
...++...+.+| +.+++|||...|+.+.+.+...+
T Consensus 89 ~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~~ 126 (320)
T TIGR01686 89 SESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLPVK 126 (320)
T ss_pred HHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCCC
Confidence 555555444433 79999999999999999877654
No 157
>PRK10444 UMP phosphatase; Provisional
Probab=95.91 E-value=0.026 Score=54.30 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=41.2
Q ss_pred EEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH---cCCC
Q 044020 438 AVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKE---CGIL 485 (563)
Q Consensus 438 G~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~---lgi~ 485 (563)
|++.-.+.+-|++.++|++|+++|++++++|+++..+...++++ +|+.
T Consensus 10 GtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~ 60 (248)
T PRK10444 10 GVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD 60 (248)
T ss_pred CceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 66767788999999999999999999999999998877777666 5764
No 158
>PLN03017 trehalose-phosphatase
Probab=95.91 E-value=0.044 Score=55.07 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=36.7
Q ss_pred CCceEEEEecccC--CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH
Q 044020 432 SGYTLIAVVGIKD--PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAK 480 (563)
Q Consensus 432 ~~~~~lG~i~~~d--~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~ 480 (563)
-|.+++-+..-.+ .+.+++.++|++|. +|++|+++|||+...+..+..
T Consensus 118 ~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 118 YDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred cCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhhc
Confidence 3444444443333 48899999999999 789999999999999988843
No 159
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.83 E-value=0.02 Score=57.68 Aligned_cols=98 Identities=24% Similarity=0.164 Sum_probs=61.3
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCC---------------CHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcc
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGD---------------NINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPK 508 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd---------------~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~ 508 (563)
-++.|++.++++.|+++|++++|+|+- ....+..+.+.+|+.- ....+......+
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~f-d~i~i~~~~~sd--------- 98 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKF-DEVLICPHFPED--------- 98 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCce-eeEEEeCCcCcc---------
Confidence 458899999999999999999999983 2345666777887741 111111000000
Q ss_pred eeEEEecChhhHHHHHHHHHHhc---CCEEEEEcCCccCHHHHhhCCceE
Q 044020 509 LQVMARSLPSDKHTLVTQLRNTF---GEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 509 ~~v~~~~~p~~K~~~v~~l~~~~---g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
...++ .| +..++..+.+.+ ...++||||+.+|+.+-+.+|+-.
T Consensus 99 -~~~~r-KP--~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~ 144 (354)
T PRK05446 99 -NCSCR-KP--KTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKG 144 (354)
T ss_pred -cCCCC-CC--CHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeE
Confidence 00011 11 223333333332 378999999999999999999853
No 160
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=95.66 E-value=0.087 Score=46.18 Aligned_cols=102 Identities=21% Similarity=0.315 Sum_probs=70.3
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHH---HHHHHHHHc-----CCCCCCCceeech-h-hhcCCCCCCCcceeEEE
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNIN---TARAIAKEC-----GILTSDGEAVEGP-E-FRNMSPADIIPKLQVMA 513 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~---~a~~~a~~l-----gi~~~~~~~~~g~-~-~~~~~~~~~~~~~~v~~ 513 (563)
|..++++.+..+++++.|++++-+|+|+.. .++....+. ++.. ..++... . +..+ .+ .+..
T Consensus 26 d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~--Gpv~~sP~~l~~al------~r-Evi~ 96 (157)
T PF08235_consen 26 DWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPD--GPVLLSPDSLFSAL------HR-EVIS 96 (157)
T ss_pred hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCC--CCEEECCcchhhhh------hc-cccc
Confidence 589999999999999999999999999954 445555555 4432 2221111 0 0000 00 1333
Q ss_pred ecChhhHHHHHHHHHHhc----CCEEEEEcCCccCHHHHhhCCce
Q 044020 514 RSLPSDKHTLVTQLRNTF----GEVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 514 ~~~p~~K~~~v~~l~~~~----g~~v~~iGDg~ND~~~l~~a~vg 554 (563)
+-..+.|...++.++..| ....+++|+..+|+.+.+++|+-
T Consensus 97 ~~p~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 97 KDPEEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred cChHHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 333457999999998763 36788999999999999998874
No 161
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.48 E-value=0.03 Score=51.04 Aligned_cols=117 Identities=23% Similarity=0.317 Sum_probs=66.8
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCc---------eeechh----hhcCC------CCCC
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGE---------AVEGPE----FRNMS------PADI 505 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~---------~~~g~~----~~~~~------~~~~ 505 (563)
++-|++.++++.|++. ...+++|-.-.+-+.++|..+|+...+.. .+...+ +..+. .+.+
T Consensus 83 ~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~~~~~~~~~geel 161 (315)
T COG4030 83 KLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSIIDVIASLSGEEL 161 (315)
T ss_pred ccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCccccccccccCccccCChHHHHHHHHhcCccccccHHHH
Confidence 4789999999999998 44444454456677899999998542211 110000 00000 0011
Q ss_pred Ccce-eEEEecChhhHHHH---------------HHHHHHhc--CCEEEEEcCCccCHHHHhhCC-ce-EeecCCCC
Q 044020 506 IPKL-QVMARSLPSDKHTL---------------VTQLRNTF--GEVVAVTGDGTNDASALHEAD-IG-LAMGIAGT 562 (563)
Q Consensus 506 ~~~~-~v~~~~~p~~K~~~---------------v~~l~~~~--g~~v~~iGDg~ND~~~l~~a~-vg-iamg~~~~ 562 (563)
+.+. .+|.+..|..-.++ ++.+.+.- ....+++||+..|+.||+.+. -| +|++-||.
T Consensus 162 fe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~sa~~VGDSItDv~ml~~~rgrGglAvaFNGN 238 (315)
T COG4030 162 FEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFSAVVVGDSITDVKMLEAARGRGGLAVAFNGN 238 (315)
T ss_pred HHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCcceeEecCcccchHHHHHhhccCceEEEecCC
Confidence 1111 25666666554444 44443321 136799999999999999873 23 55544554
No 162
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=95.41 E-value=0.03 Score=53.07 Aligned_cols=89 Identities=21% Similarity=0.252 Sum_probs=59.5
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHH---HHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNIN---TARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKH 521 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~---~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~ 521 (563)
+.-|++.+.++.++++|++|+++|||+.. .+..-.++.|+......++.+..-.. .......|.
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~-------------~~~~~~yK~ 181 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPS-------------KKSAVEYKS 181 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTS-------------S------SH
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccc-------------cccccccch
Confidence 45678999999999999999999999754 55666778887642322222211000 000123477
Q ss_pred HHHHHHHHhcC-CEEEEEcCCccCHHH
Q 044020 522 TLVTQLRNTFG-EVVAVTGDGTNDASA 547 (563)
Q Consensus 522 ~~v~~l~~~~g-~~v~~iGDg~ND~~~ 547 (563)
..-+.+.+. | +.++.+||..+|..-
T Consensus 182 ~~r~~i~~~-Gy~Ii~~iGD~~~D~~~ 207 (229)
T PF03767_consen 182 ERRKEIEKK-GYRIIANIGDQLSDFSG 207 (229)
T ss_dssp HHHHHHHHT-TEEEEEEEESSGGGCHC
T ss_pred HHHHHHHHc-CCcEEEEeCCCHHHhhc
Confidence 777777776 6 578999999999876
No 163
>PLN02645 phosphoglycolate phosphatase
Probab=95.26 E-value=0.05 Score=54.41 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=40.4
Q ss_pred EEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHH---HHcCCCC
Q 044020 438 AVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIA---KECGILT 486 (563)
Q Consensus 438 G~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a---~~lgi~~ 486 (563)
|++.-.+.+-+++.++|++|+++|++++++|+++..+...++ +++|+..
T Consensus 37 Gtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~ 88 (311)
T PLN02645 37 GVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNV 88 (311)
T ss_pred CCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCC
Confidence 666666778899999999999999999999999966665555 6678753
No 164
>PHA02597 30.2 hypothetical protein; Provisional
Probab=95.04 E-value=0.08 Score=48.96 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=57.6
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.+++++|++.+ +.+++|..+........+.+++.......++ ..+.++... .|.+++
T Consensus 74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~---------------~i~~~~~~~-~kp~~~ 136 (197)
T PHA02597 74 SAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFS---------------EVLMCGHDE-SKEKLF 136 (197)
T ss_pred cCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCccc---------------EEEEeccCc-ccHHHH
Confidence 37899999999999985 5666777555554545666766431100000 001122211 234555
Q ss_pred HHHHHhcC-CEEEEEcCCccCHHHHhhC--Cce
Q 044020 525 TQLRNTFG-EVVAVTGDGTNDASALHEA--DIG 554 (563)
Q Consensus 525 ~~l~~~~g-~~v~~iGDg~ND~~~l~~a--~vg 554 (563)
....+++| +.+++|||..+|+.+-++| |+-
T Consensus 137 ~~a~~~~~~~~~v~vgDs~~di~aA~~a~~Gi~ 169 (197)
T PHA02597 137 IKAKEKYGDRVVCFVDDLAHNLDAAHEALSQLP 169 (197)
T ss_pred HHHHHHhCCCcEEEeCCCHHHHHHHHHHHcCCc
Confidence 54444444 5688999999999999999 983
No 165
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=94.79 E-value=0.12 Score=45.99 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=70.4
Q ss_pred ccCCCCcchHHHHHHHHhCCC--eEEEEcCC-------CHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEE
Q 044020 442 IKDPVRPGVKEAVQTCLEAGI--TVRMVTGD-------NINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVM 512 (563)
Q Consensus 442 ~~d~~~~~~~~~I~~l~~~gi--~v~i~TGd-------~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~ 512 (563)
-++.+.++..+.+++|++.+. +|+|+|-- ....|..+.+.+|+.- ..+
T Consensus 56 ~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpv-----------------------l~h 112 (168)
T PF09419_consen 56 YEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPV-----------------------LRH 112 (168)
T ss_pred CcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcE-----------------------EEe
Confidence 456789999999999999977 49999986 4889999999999862 013
Q ss_pred EecChhhHHHHHHHHHHh----cCCEEEEEcCC-ccCHHHHhhCC-ceEe
Q 044020 513 ARSLPSDKHTLVTQLRNT----FGEVVAVTGDG-TNDASALHEAD-IGLA 556 (563)
Q Consensus 513 ~~~~p~~K~~~v~~l~~~----~g~~v~~iGDg-~ND~~~l~~a~-vgia 556 (563)
....|....++++.++.+ ..+++++|||- ..|+-|-...| .+|=
T Consensus 113 ~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~til 162 (168)
T PF09419_consen 113 RAKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTIL 162 (168)
T ss_pred CCCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEE
Confidence 345786667888888653 25789999997 56888877766 4543
No 166
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=94.65 E-value=0.16 Score=48.61 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=54.7
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHH---HHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecC---
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNIN---TARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSL--- 516 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~---~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~--- 516 (563)
..+.-|++.+..+.+++.|++|+++|||... .+..-.++.|+..... ++-|-.
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~---------------------LiLR~~~D~ 201 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEK---------------------LILKDPQDN 201 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcce---------------------eeecCCCCC
Confidence 4567789999999999999999999999864 2344445567754221 222211
Q ss_pred -----hhhHHHHHHHHHHhcC-CEEEEEcCCccCHH
Q 044020 517 -----PSDKHTLVTQLRNTFG-EVVAVTGDGTNDAS 546 (563)
Q Consensus 517 -----p~~K~~~v~~l~~~~g-~~v~~iGDg~ND~~ 546 (563)
.+.|...-+.+.+. | +.++.+||..+|..
T Consensus 202 ~~~~av~yKs~~R~~li~e-GYrIv~~iGDq~sDl~ 236 (275)
T TIGR01680 202 SAENAVEYKTAARAKLIQE-GYNIVGIIGDQWNDLK 236 (275)
T ss_pred ccchhHHHHHHHHHHHHHc-CceEEEEECCCHHhcc
Confidence 12344444555555 5 57899999999984
No 167
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=94.34 E-value=0.069 Score=51.33 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=37.3
Q ss_pred ecChhhHHHHHHHHHHhcC---CEEEEEcCCccCHHHHhhC--------CceEeec
Q 044020 514 RSLPSDKHTLVTQLRNTFG---EVVAVTGDGTNDASALHEA--------DIGLAMG 558 (563)
Q Consensus 514 ~~~p~~K~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a--------~vgiamg 558 (563)
+..+.+|...++.+.+.++ ..++++||+.||.+|++.+ +.+|+|+
T Consensus 162 ~p~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~ 217 (244)
T TIGR00685 162 KPRFVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIG 217 (244)
T ss_pred eeCCCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEe
Confidence 3445689999998887755 4799999999999999999 5788883
No 168
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=93.97 E-value=0.15 Score=49.48 Aligned_cols=54 Identities=7% Similarity=0.095 Sum_probs=46.4
Q ss_pred CC-cchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhc
Q 044020 446 VR-PGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRN 499 (563)
Q Consensus 446 ~~-~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~ 499 (563)
|| |++.+++++|+++|++++++|+.+...+....+++|+......++.+.+...
T Consensus 146 irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~ 200 (301)
T TIGR01684 146 IRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAE 200 (301)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCcccc
Confidence 55 9999999999999999999999999999999999999876666666655543
No 169
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.88 E-value=0.18 Score=47.67 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=65.0
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHH
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTL 523 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~ 523 (563)
-++.+++.+++++++.+ ++++++|--.........+++|+......++...+. -+....|+--..+
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~-------------g~~KP~~~~f~~~ 163 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDV-------------GVAKPDPEIFEYA 163 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEeccc-------------ccCCCCcHHHHHH
Confidence 35788999999999999 999999998888899999999986643333322211 1112222323344
Q ss_pred HHHHHHhcCCEEEEEcCC-ccCHHHHhhCCc
Q 044020 524 VTQLRNTFGEVVAVTGDG-TNDASALHEADI 553 (563)
Q Consensus 524 v~~l~~~~g~~v~~iGDg-~ND~~~l~~a~v 553 (563)
.+.+... .+.+++|||+ .||+..-+.+|.
T Consensus 164 ~~~~g~~-p~~~l~VgD~~~~di~gA~~~G~ 193 (229)
T COG1011 164 LEKLGVP-PEEALFVGDSLENDILGARALGM 193 (229)
T ss_pred HHHcCCC-cceEEEECCChhhhhHHHHhcCc
Confidence 4444443 5789999997 677566677776
No 170
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=93.69 E-value=0.1 Score=49.97 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=56.7
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.++++.|++. +++.++|..+.. .+.+|+......++...+.. .....|+--..++
T Consensus 113 ~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~-------------~~KP~p~~~~~a~ 173 (238)
T PRK10748 113 DVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHG-------------RSKPFSDMYHLAA 173 (238)
T ss_pred CCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCC-------------cCCCcHHHHHHHH
Confidence 4778999999999976 898889886543 25667654322222221110 0011222222333
Q ss_pred HHHHHhcCCEEEEEcCC-ccCHHHHhhCCceEe
Q 044020 525 TQLRNTFGEVVAVTGDG-TNDASALHEADIGLA 556 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg-~ND~~~l~~a~vgia 556 (563)
+.+... .+.+++|||+ ..|+.+-+.||+-.+
T Consensus 174 ~~~~~~-~~~~~~VGD~~~~Di~~A~~aG~~~i 205 (238)
T PRK10748 174 EKLNVP-IGEILHVGDDLTTDVAGAIRCGMQAC 205 (238)
T ss_pred HHcCCC-hhHEEEEcCCcHHHHHHHHHCCCeEE
Confidence 333333 4789999999 599999999998544
No 171
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=93.17 E-value=0.25 Score=44.66 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=42.4
Q ss_pred eEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHH---HHHHHHcCCCC
Q 044020 435 TLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTA---RAIAKECGILT 486 (563)
Q Consensus 435 ~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a---~~~a~~lgi~~ 486 (563)
.+-|++..++-.-|++.+|+++|++++.+|..+|....++- ..-.++||++-
T Consensus 13 DlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v 67 (262)
T KOG3040|consen 13 DLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDV 67 (262)
T ss_pred eccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCc
Confidence 35699999999999999999999999999999987665544 44455677764
No 172
>PLN02151 trehalose-phosphatase
Probab=92.92 E-value=0.48 Score=47.58 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=30.0
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKE 481 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~ 481 (563)
+.++++++|++|. .+..|+++|||+......+..-
T Consensus 121 ~~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~~~ 155 (354)
T PLN02151 121 MSKKMRNTVRKLA-KCFPTAIVSGRCREKVSSFVKL 155 (354)
T ss_pred CCHHHHHHHHHHh-cCCCEEEEECCCHHHHHHHcCC
Confidence 6788999999999 4579999999999988877653
No 173
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=92.90 E-value=0.42 Score=50.71 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=61.2
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH-cCCCCCCCceeechhhhcCCCCCCCcceeEEEe------cChh
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKE-CGILTSDGEAVEGPEFRNMSPADIIPKLQVMAR------SLPS 518 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~-lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~------~~p~ 518 (563)
+++++.+. +++.|.+ +++|+-+..-+.++|++ +|++. +-|.+++.-... .+-.+ +.-+
T Consensus 111 l~~~a~~~---~~~~g~~-vvVSASp~~~Vepfa~~~LGid~-----VIgTeLev~~~G------~~TG~i~g~~~c~Ge 175 (497)
T PLN02177 111 VHPETWRV---FNSFGKR-YIITASPRIMVEPFVKTFLGADK-----VLGTELEVSKSG------RATGFMKKPGVLVGD 175 (497)
T ss_pred cCHHHHHH---HHhCCCE-EEEECCcHHHHHHHHHHcCCCCE-----EEecccEECcCC------EEeeeecCCCCCccH
Confidence 66665554 4556754 99999999999999987 89874 111111110000 01111 2346
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 519 DKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 519 ~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
+|..-++..... .....+.||+.||.+||+.|+.+++++
T Consensus 176 ~Kv~rl~~~~g~-~~~~~aYgDS~sD~plL~~a~e~y~V~ 214 (497)
T PLN02177 176 HKRDAVLKEFGD-ALPDLGLGDRETDHDFMSICKEGYMVP 214 (497)
T ss_pred HHHHHHHHHhCC-CCceEEEECCccHHHHHHhCCccEEeC
Confidence 688777643211 112367899999999999999999887
No 174
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=92.82 E-value=0.24 Score=43.59 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=60.4
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHH----HHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecCh-hhH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNIN----TARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLP-SDK 520 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~----~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p-~~K 520 (563)
+++-+++.|..-+++|=+++.+|||.+. .++.+|+...|.+.+.. +|+.-.| ..+
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv--------------------~f~Gdk~k~~q 174 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPV--------------------IFAGDKPKPGQ 174 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcce--------------------eeccCCCCccc
Confidence 5667889999999999999999999864 56777888777654333 3332222 112
Q ss_pred HHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCc-eE
Q 044020 521 HTLVTQLRNTFGEVVAVTGDGTNDASALHEADI-GL 555 (563)
Q Consensus 521 ~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~v-gi 555 (563)
..=..+++++ +-. +.-||+.||+.+-+.||+ ||
T Consensus 175 y~Kt~~i~~~-~~~-IhYGDSD~Di~AAkeaG~RgI 208 (237)
T COG3700 175 YTKTQWIQDK-NIR-IHYGDSDNDITAAKEAGARGI 208 (237)
T ss_pred ccccHHHHhc-Cce-EEecCCchhhhHHHhcCccce
Confidence 2223455555 444 445999999999999987 55
No 175
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=92.81 E-value=0.15 Score=49.32 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=39.6
Q ss_pred EEecccCC----CCcchHHHHHHHHhCCCeEEEEcCCCHHH---HHHHHHHcCCCC
Q 044020 438 AVVGIKDP----VRPGVKEAVQTCLEAGITVRMVTGDNINT---ARAIAKECGILT 486 (563)
Q Consensus 438 G~i~~~d~----~~~~~~~~I~~l~~~gi~v~i~TGd~~~~---a~~~a~~lgi~~ 486 (563)
|++.-.+. +-|++.++|++|+++|++++++||++..+ .....+++|+.-
T Consensus 10 Gtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~ 65 (257)
T TIGR01458 10 GVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDI 65 (257)
T ss_pred CeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 55555566 88999999999999999999999976654 666677788764
No 176
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=92.50 E-value=0.1 Score=47.21 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=58.1
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
++.|++.++++ ++.++|.-+........+.+|+......++.+++.. .....|+--..++
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~-------------~~KP~p~~f~~~~ 149 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVR-------------AYKPDPVVYELVF 149 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcC-------------CCCCCHHHHHHHH
Confidence 47889999888 378999999998999999999875433344433211 1122333334555
Q ss_pred HHHHHhcCCEEEEEcCCccCHHHHhh
Q 044020 525 TQLRNTFGEVVAVTGDGTNDASALHE 550 (563)
Q Consensus 525 ~~l~~~~g~~v~~iGDg~ND~~~l~~ 550 (563)
+.+... .+.+++|||+..|+.+-+.
T Consensus 150 ~~~~~~-p~~~l~vgD~~~Di~~A~~ 174 (175)
T TIGR01493 150 DTVGLP-PDRVLMVAAHQWDLIGARK 174 (175)
T ss_pred HHHCCC-HHHeEeEecChhhHHHHhc
Confidence 555544 5789999999999987654
No 177
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=92.39 E-value=0.79 Score=44.98 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=37.5
Q ss_pred EEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHH---HHHHHHHHcCCCC
Q 044020 438 AVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNIN---TARAIAKECGILT 486 (563)
Q Consensus 438 G~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~---~a~~~a~~lgi~~ 486 (563)
|++.-.+.+-+++.++|++|+++|++++++|+++.. ....-.+++|+..
T Consensus 11 Gtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~ 62 (279)
T TIGR01452 11 GVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNG 62 (279)
T ss_pred CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 455556778888999999999999999999997644 3334456678754
No 178
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=91.75 E-value=0.4 Score=46.58 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=42.5
Q ss_pred CcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechh
Q 044020 447 RPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPE 496 (563)
Q Consensus 447 ~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~ 496 (563)
.|++.+++++|+++|+++.++|+.+...+....+.+|+......++.+.+
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~ 199 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGR 199 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCC
Confidence 38999999999999999999998888888999999999876555555443
No 179
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=91.63 E-value=0.47 Score=45.28 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhcCC------EEEEEcCCccCHHHHhhC------CceEeec
Q 044020 518 SDKHTLVTQLRNTFGE------VVAVTGDGTNDASALHEA------DIGLAMG 558 (563)
Q Consensus 518 ~~K~~~v~~l~~~~g~------~v~~iGDg~ND~~~l~~a------~vgiamg 558 (563)
..|+..++.+.+..+. .++++||...|-.||+.. +++|.+|
T Consensus 164 ~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~ 216 (235)
T PF02358_consen 164 VNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVG 216 (235)
T ss_dssp --HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES
T ss_pred CChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEE
Confidence 3499999999887553 699999999999999874 5677777
No 180
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=90.51 E-value=0.4 Score=40.56 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=28.2
Q ss_pred CCCCcchHHHHHHHHhCCCeEEEEcCCCHHHH
Q 044020 444 DPVRPGVKEAVQTCLEAGITVRMVTGDNINTA 475 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a 475 (563)
+++.+++.+++++++++|+.++++|||+....
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~ 54 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMRTY 54 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCchhh
Confidence 55788999999999999999999999987643
No 181
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=90.03 E-value=1.1 Score=47.72 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=33.7
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCH------------HHHHHHHHHcCCC
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNI------------NTARAIAKECGIL 485 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~------------~~a~~~a~~lgi~ 485 (563)
+.|++.++|++|++.|++++|+|.-+. ..+..+.+++|+.
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip 249 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP 249 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc
Confidence 468999999999999999999998555 3477788888874
No 182
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=90.00 E-value=1.5 Score=43.96 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=66.3
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHc-C-------CCCCCCceeechh----------hhcCCCC---C
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKEC-G-------ILTSDGEAVEGPE----------FRNMSPA---D 504 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~l-g-------i~~~~~~~~~g~~----------~~~~~~~---~ 504 (563)
..|++.+++++|+++|+++.++|+-+...+..+.+.+ | +......++.+.. +.....+ .
T Consensus 185 ~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g~~ 264 (343)
T TIGR02244 185 RDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVETGSL 264 (343)
T ss_pred cchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCCCcc
Confidence 4789999999999999999999999999999999996 6 4444444444421 1111100 0
Q ss_pred C------CcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCC-ccCHHHHh-hCCc
Q 044020 505 I------IPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDG-TNDASALH-EADI 553 (563)
Q Consensus 505 ~------~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg-~ND~~~l~-~a~v 553 (563)
. +.+-.+|..- .-..+.+.+... +.+|++|||. ..|+-.-+ .+|.
T Consensus 265 ~~~~~~~l~~g~vY~gG---n~~~~~~~l~~~-~~~vlYvGD~i~~Di~~~kk~~Gw 317 (343)
T TIGR02244 265 KWGEVDGLEPGKVYSGG---SLKQFHELLKWR-GKEVLYFGDHIYGDLLRSKKKRGW 317 (343)
T ss_pred cCCccccccCCCeEeCC---CHHHHHHHHCCC-CCcEEEECCcchHHHHhhHHhcCc
Confidence 0 1111233321 122455555555 7899999998 56887665 5543
No 183
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=89.60 E-value=1.3 Score=39.55 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=55.0
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcC-CCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTG-DNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TG-d~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
+-|++.++++.|+++|+++.++|- +.+.-|+.+.+.+++.........-.+ .--+.+..|..|..-.
T Consensus 46 lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~------------~F~~~eI~~gsK~~Hf 113 (169)
T PF12689_consen 46 LYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIE------------YFDYLEIYPGSKTTHF 113 (169)
T ss_dssp --TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------C------------CECEEEESSS-HHHHH
T ss_pred eCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchh------------hcchhheecCchHHHH
Confidence 789999999999999999999994 778999999999999821111111000 0123455577888887
Q ss_pred HHHHHhcC---CEEEEEcCCccCHHHHhh
Q 044020 525 TQLRNTFG---EVVAVTGDGTNDASALHE 550 (563)
Q Consensus 525 ~~l~~~~g---~~v~~iGDg~ND~~~l~~ 550 (563)
+.+++..| +.++++=|-..-....+.
T Consensus 114 ~~i~~~tgI~y~eMlFFDDe~~N~~~v~~ 142 (169)
T PF12689_consen 114 RRIHRKTGIPYEEMLFFDDESRNIEVVSK 142 (169)
T ss_dssp HHHHHHH---GGGEEEEES-HHHHHHHHT
T ss_pred HHHHHhcCCChhHEEEecCchhcceeeEe
Confidence 87776544 567777776554444443
No 184
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=89.37 E-value=0.27 Score=43.85 Aligned_cols=94 Identities=13% Similarity=0.013 Sum_probs=62.7
Q ss_pred cccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC-CCCceeechhhhcCCCCCCCcceeEEEecChhh
Q 044020 441 GIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT-SDGEAVEGPEFRNMSPADIIPKLQVMARSLPSD 519 (563)
Q Consensus 441 ~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~-~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~ 519 (563)
.+.=..||++.+.++.|.+. +++++.|.....-|..+.+.++... .-..++ +.......
T Consensus 38 ~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l-------------------~r~~~~~~ 97 (162)
T TIGR02251 38 PVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRL-------------------YRESCVFT 97 (162)
T ss_pred EEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEE-------------------EccccEEe
Confidence 44456999999999999988 9999999999999999999998653 111111 11100001
Q ss_pred HHHHHHHHH---HhcCCEEEEEcCCccCHHHHhhCCceE
Q 044020 520 KHTLVTQLR---NTFGEVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 520 K~~~v~~l~---~~~g~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
+..+++.|. .. ...|++|||...|..+-+.+++-+
T Consensus 98 ~~~~~K~L~~l~~~-~~~vIiVDD~~~~~~~~~~NgI~i 135 (162)
T TIGR02251 98 NGKYVKDLSLVGKD-LSKVIIIDNSPYSYSLQPDNAIPI 135 (162)
T ss_pred CCCEEeEchhcCCC-hhhEEEEeCChhhhccCccCEeec
Confidence 111333333 22 367999999999987766666544
No 185
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=88.42 E-value=2 Score=41.53 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=37.5
Q ss_pred EEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH
Q 044020 437 IAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKE 481 (563)
Q Consensus 437 lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~ 481 (563)
=|++.--..+-|++.++|++|+++|++++++|..+..+...++++
T Consensus 16 DGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~ 60 (269)
T COG0647 16 DGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAAR 60 (269)
T ss_pred cCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 388888899999999999999999999999998766555544443
No 186
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=87.43 E-value=2.7 Score=37.90 Aligned_cols=87 Identities=25% Similarity=0.324 Sum_probs=54.4
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcC-----CCHHHHHHHHH----------HcCCCCCCCceeechhhhcCCCCCCCccee
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTG-----DNINTARAIAK----------ECGILTSDGEAVEGPEFRNMSPADIIPKLQ 510 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TG-----d~~~~a~~~a~----------~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~ 510 (563)
+.+++.+++.+++++|++++|+|- |.+.+...+.+ +.|.. +++ .
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~------id~---------------i 90 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVK------IDG---------------I 90 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCc------cce---------------E
Confidence 678999999999999999999996 33322222222 22211 000 1
Q ss_pred EEEecCh--------hhHHHHHHHHHHhcC---CEEEEEcCCccCHHHHhhCCce
Q 044020 511 VMARSLP--------SDKHTLVTQLRNTFG---EVVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 511 v~~~~~p--------~~K~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a~vg 554 (563)
.+|--.| ....-+.+.+++. + ....+|||...|+.+-..+++.
T Consensus 91 ~~Cph~p~~~c~cRKP~~gm~~~~~~~~-~iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 91 LYCPHHPEDNCDCRKPKPGMLLSALKEY-NIDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred EECCCCCCCCCcccCCChHHHHHHHHHh-CCCccceEEecCcHHHHHHHHHCCCC
Confidence 2222222 2234444444443 5 7899999999999998888874
No 187
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=86.28 E-value=3.6 Score=39.70 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=72.6
Q ss_pred cccCCCCcchHHHHHHHHhC-CCeEEEEcCCCHHHHHHHHHHcCC--CCCCCcee---echhhhcC--------------
Q 044020 441 GIKDPVRPGVKEAVQTCLEA-GITVRMVTGDNINTARAIAKECGI--LTSDGEAV---EGPEFRNM-------------- 500 (563)
Q Consensus 441 ~~~d~~~~~~~~~I~~l~~~-gi~v~i~TGd~~~~a~~~a~~lgi--~~~~~~~~---~g~~~~~~-------------- 500 (563)
.....+.++..+++++|... ...++|+|||+......+..-.|+ ...+...+ +|......
T Consensus 36 p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i~l~aehGa~~r~~~g~~~~~~~~~~~~~~~~~v~~ 115 (266)
T COG1877 36 PEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGIGLIAEHGAEVRDPNGKWWINLAEEADLRWLKEVAA 115 (266)
T ss_pred ccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCccEEEecceEEecCCCCeeEecCHHHHhhHHHHHHH
Confidence 34556888999999999988 557999999999999888874443 22211111 22110000
Q ss_pred ---------C-------------------CC------------C--------CCcceeEEEecChhhHHHHHHHHHHhcC
Q 044020 501 ---------S-------------------PA------------D--------IIPKLQVMARSLPSDKHTLVTQLRNTFG 532 (563)
Q Consensus 501 ---------~-------------------~~------------~--------~~~~~~v~~~~~p~~K~~~v~~l~~~~g 532 (563)
+ .+ . ...+..|..+.+-..|+..++++.+..+
T Consensus 116 ~l~~~v~r~pGs~iE~K~~a~~~Hyr~a~~~~~~~~a~~~~~~~~~~~~~~v~~gk~vVEvrp~~~~KG~a~~~i~~~~~ 195 (266)
T COG1877 116 ILEYYVERTPGSYIERKGFAVALHYRNAEDDEGAALALAEAATLINELKLRVTPGKMVVELRPPGVSKGAAIKYIMDELP 195 (266)
T ss_pred HHHHHhhcCCCeEEEEcCcEEEEeeccCCchhhHHHHHHHHHhccccccEEEEeCceEEEEeeCCcchHHHHHHHHhcCC
Confidence 0 00 0 0112234455445569999998887644
Q ss_pred C---EEEEEcCCccCHHHHhhCC
Q 044020 533 E---VVAVTGDGTNDASALHEAD 552 (563)
Q Consensus 533 ~---~v~~iGDg~ND~~~l~~a~ 552 (563)
. .+++.||...|-.||+..+
T Consensus 196 ~~~~~~~~aGDD~TDE~~F~~v~ 218 (266)
T COG1877 196 FDGRFPIFAGDDLTDEDAFAAVN 218 (266)
T ss_pred CCCCcceecCCCCccHHHHHhhc
Confidence 3 5899999999999999987
No 188
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=85.87 E-value=0.37 Score=46.65 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=56.9
Q ss_pred CcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHH
Q 044020 447 RPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQ 526 (563)
Q Consensus 447 ~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~ 526 (563)
-++..++++.|++.++++.++|+.+..........+|+.. -+..+... .-.+..++....|.--..+++.
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~---------~~~~i~~~-~~~~~~~~gKP~p~~~~~~~~~ 191 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGP---------FVTALEYA-TDTKATVVGKPSKTFFLEALRA 191 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchH---------HHHHHHHH-hCCCceeecCCCHHHHHHHHHH
Confidence 3678889999999999999999866433222111111110 00000000 0000113334444444445555
Q ss_pred HHHhcCCEEEEEcCCc-cCHHHHhhCCc-eEeec
Q 044020 527 LRNTFGEVVAVTGDGT-NDASALHEADI-GLAMG 558 (563)
Q Consensus 527 l~~~~g~~v~~iGDg~-ND~~~l~~a~v-giamg 558 (563)
+... .++++||||.. +|+.+-+.+|+ ++.+.
T Consensus 192 ~~~~-~~~~~~vGD~~~~Di~~a~~~G~~~i~v~ 224 (257)
T TIGR01458 192 TGCE-PEEAVMIGDDCRDDVGGAQDCGMRGIQVR 224 (257)
T ss_pred hCCC-hhhEEEECCCcHHHHHHHHHcCCeEEEEC
Confidence 5433 57899999996 99999999988 44443
No 189
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=82.42 E-value=9 Score=35.96 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=35.7
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHH----HHHHHHHcCCCC
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINT----ARAIAKECGILT 486 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~----a~~~a~~lgi~~ 486 (563)
.+-|++.+.++-.-+.|.+|..+|.|.... +..-.++.|+..
T Consensus 122 k~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~ 167 (274)
T COG2503 122 KAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQ 167 (274)
T ss_pred ccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCccc
Confidence 467899999999999999999999998765 566777788865
No 190
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=80.57 E-value=2.9 Score=39.46 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=65.1
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHH
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHT 522 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~ 522 (563)
.-++-++..+++++||++|..+.++|-=. .....+...+|+....+.++..-+. -.-...|.--..
T Consensus 111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d-~r~~~~l~~~~l~~~fD~vv~S~e~-------------g~~KPDp~If~~ 176 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKGTILGIISNFD-DRLRLLLLPLGLSAYFDFVVESCEV-------------GLEKPDPRIFQL 176 (237)
T ss_pred CceeccHHHHHHHHHHhCCeEEEEecCCc-HHHHHHhhccCHHHhhhhhhhhhhh-------------ccCCCChHHHHH
Confidence 33455667799999999998888888743 2334777778875433222222111 111222333345
Q ss_pred HHHHHHHhcCCEEEEEcCC-ccCHHHHhhCCc-eEeec
Q 044020 523 LVTQLRNTFGEVVAVTGDG-TNDASALHEADI-GLAMG 558 (563)
Q Consensus 523 ~v~~l~~~~g~~v~~iGDg-~ND~~~l~~a~v-giamg 558 (563)
.++.+..+ ++++++|||. .||+..-+.+|. ++-+.
T Consensus 177 al~~l~v~-Pee~vhIgD~l~nD~~gA~~~G~~ailv~ 213 (237)
T KOG3085|consen 177 ALERLGVK-PEECVHIGDLLENDYEGARNLGWHAILVD 213 (237)
T ss_pred HHHHhCCC-hHHeEEecCccccccHhHHHcCCEEEEEc
Confidence 66666666 7899999996 899999998887 44443
No 191
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=77.65 E-value=0.81 Score=43.86 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=51.6
Q ss_pred CcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHH
Q 044020 447 RPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQ 526 (563)
Q Consensus 447 ~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~ 526 (563)
-++..++++.++++|+++ ++|......+.......|... -+..+. ..-.+.......+|+--..+++.
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~---------~~~~i~--~~g~~~~~~gKP~~~~~~~~~~~ 207 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGY---------YAELIK--QLGGKVIYSGKPYPAIFHKALKE 207 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccH---------HHHHHH--HhCCcEecCCCCCHHHHHHHHHH
Confidence 478889999999999997 778765443332222222110 000000 00000011223333333344444
Q ss_pred HHHhcCCEEEEEcCC-ccCHHHHhhCCce
Q 044020 527 LRNTFGEVVAVTGDG-TNDASALHEADIG 554 (563)
Q Consensus 527 l~~~~g~~v~~iGDg-~ND~~~l~~a~vg 554 (563)
+.....++++||||. .+|+.+=+.+|+-
T Consensus 208 ~~~~~~~~~~~vGD~~~~Di~~a~~~G~~ 236 (242)
T TIGR01459 208 CSNIPKNRMLMVGDSFYTDILGANRLGID 236 (242)
T ss_pred cCCCCcccEEEECCCcHHHHHHHHHCCCe
Confidence 432112579999999 6999999999884
No 192
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=77.42 E-value=2.1 Score=40.55 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=55.9
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEe--cChhhHHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMAR--SLPSDKHT 522 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~--~~p~~K~~ 522 (563)
.+|+++.+.++.|++.+|++.+.|+-=..-...+.++.|...++..+++.--.-+ ++ ....-|.. ..+-.|-.
T Consensus 90 ~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd--~~---g~l~gF~~~lIH~~NKn~ 164 (246)
T PF05822_consen 90 MLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFD--ED---GVLVGFKGPLIHTFNKNE 164 (246)
T ss_dssp -B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE---TT---SBEEEE-SS---TT-HHH
T ss_pred hhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEEC--Cc---ceEeecCCCceEEeeCCc
Confidence 4899999999999999999999999888888888898887766544443211000 00 00001111 01112322
Q ss_pred -HH---HHHHHh-cCCEEEEEcCCccCHHHHhhC
Q 044020 523 -LV---TQLRNT-FGEVVAVTGDGTNDASALHEA 551 (563)
Q Consensus 523 -~v---~~l~~~-~g~~v~~iGDg~ND~~~l~~a 551 (563)
.+ ..+++- ....|+..||+.-|+.|-.-.
T Consensus 165 ~~l~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~ 198 (246)
T PF05822_consen 165 SALEDSPYFKQLKKRTNVLLLGDSLGDLHMADGV 198 (246)
T ss_dssp HHHTTHHHHHCTTT--EEEEEESSSGGGGTTTT-
T ss_pred ccccCchHHHHhccCCcEEEecCccCChHhhcCC
Confidence 11 112211 125789999999999996444
No 193
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=77.30 E-value=5.6 Score=37.34 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=64.2
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcC-CCCCC-Ccee-echhhhcCCCCCCCcceeEEEecChhhHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECG-ILTSD-GEAV-EGPEFRNMSPADIIPKLQVMARSLPSDKHT 522 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lg-i~~~~-~~~~-~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~ 522 (563)
+.|++.+.++.|+..|+++.++|+.+..+...-.+..+ +.... ..++ +|.++.. ....|+--..
T Consensus 93 ~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~-------------gKP~Pdi~l~ 159 (222)
T KOG2914|consen 93 LMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKN-------------GKPDPDIYLK 159 (222)
T ss_pred cCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccC-------------CCCCchHHHH
Confidence 56699999999999999999999997766655555554 33322 2222 2333321 1345555566
Q ss_pred HHHHHHHhcC-CEEEEEcCCccCHHHHhhCCceE
Q 044020 523 LVTQLRNTFG-EVVAVTGDGTNDASALHEADIGL 555 (563)
Q Consensus 523 ~v~~l~~~~g-~~v~~iGDg~ND~~~l~~a~vgi 555 (563)
..+.+... . +.++++.|..+=+.|-++|+.=+
T Consensus 160 A~~~l~~~-~~~k~lVfeds~~Gv~aa~aagm~v 192 (222)
T KOG2914|consen 160 AAKRLGVP-PPSKCLVFEDSPVGVQAAKAAGMQV 192 (222)
T ss_pred HHHhcCCC-CccceEEECCCHHHHHHHHhcCCeE
Confidence 66666665 5 77888888888888877777644
No 194
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=77.29 E-value=5.1 Score=38.16 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=39.5
Q ss_pred EEecccCCCCcchHHHHHHHHhCCCeEEEEc---CCCHHHHHHHHHH-cCCCC
Q 044020 438 AVVGIKDPVRPGVKEAVQTCLEAGITVRMVT---GDNINTARAIAKE-CGILT 486 (563)
Q Consensus 438 G~i~~~d~~~~~~~~~I~~l~~~gi~v~i~T---Gd~~~~a~~~a~~-lgi~~ 486 (563)
|++.-.+.+-+++.++|+.++++|++++++| |++.........+ +|+..
T Consensus 7 GvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~ 59 (236)
T TIGR01460 7 GVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDV 59 (236)
T ss_pred CccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 5555567778899999999999999999998 7888777666666 78744
No 195
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=74.93 E-value=3.8 Score=30.97 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHhcCCEEEEEcCC-ccCHHHHhhCCc-eEeec
Q 044020 517 PSDKHTLVTQLRNTFGEVVAVTGDG-TNDASALHEADI-GLAMG 558 (563)
Q Consensus 517 p~~K~~~v~~l~~~~g~~v~~iGDg-~ND~~~l~~a~v-giamg 558 (563)
|.--..+.+.+... ..+++||||. ..|+.+-+.+|+ +|.+.
T Consensus 7 p~~~~~a~~~~~~~-~~~~~~VGD~~~~Di~~a~~~G~~~ilV~ 49 (75)
T PF13242_consen 7 PGMLEQALKRLGVD-PSRCVMVGDSLETDIEAAKAAGIDTILVL 49 (75)
T ss_dssp HHHHHHHHHHHTSG-GGGEEEEESSTTTHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHHcCCC-HHHEEEEcCCcHhHHHHHHHcCCcEEEEC
Confidence 33334455555444 5789999999 999999999998 55554
No 196
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=74.78 E-value=16 Score=36.55 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=39.1
Q ss_pred EEecccCCCCcchHHHHHHHHhC----CCeEEEEcCCC---HHH-HHHHHHHcCCC
Q 044020 438 AVVGIKDPVRPGVKEAVQTCLEA----GITVRMVTGDN---INT-ARAIAKECGIL 485 (563)
Q Consensus 438 G~i~~~d~~~~~~~~~I~~l~~~----gi~v~i~TGd~---~~~-a~~~a~~lgi~ 485 (563)
|++.-.+++-+++.++++.|+.. |+++.++|-.. ... +..+.+++|+.
T Consensus 9 GvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 9 GVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred CceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 77778889999999999999998 99999998544 444 45556888875
No 197
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=72.23 E-value=13 Score=36.37 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHH
Q 044020 447 RPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQ 526 (563)
Q Consensus 447 ~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~ 526 (563)
-++..++++.|++.|+ ..++|..+..... .. ++.... .|.-+..+.. ..-.+.......+|+--..+++.
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~--~~--~~~~~~----~g~~~~~i~~-~~g~~~~~~gKP~p~~~~~~~~~ 214 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPL--SD--GSRTPG----TGSLVAAIET-ASGRQPLVVGKPSPYMFECITEN 214 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCC--cC--CCcccC----hHHHHHHHHH-HhCCceeccCCCCHHHHHHHHHH
Confidence 5688999999999998 6677765432110 00 100000 0000000000 00000001223344444445555
Q ss_pred HHHhcCCEEEEEcCC-ccCHHHHhhCCc-eEeec
Q 044020 527 LRNTFGEVVAVTGDG-TNDASALHEADI-GLAMG 558 (563)
Q Consensus 527 l~~~~g~~v~~iGDg-~ND~~~l~~a~v-giamg 558 (563)
+... .++++||||. ..|+.+-+.||+ +|.+.
T Consensus 215 ~~~~-~~~~lmIGD~~~tDI~~A~~aGi~si~V~ 247 (279)
T TIGR01452 215 FSID-PARTLMVGDRLETDILFGHRCGMTTVLVL 247 (279)
T ss_pred hCCC-hhhEEEECCChHHHHHHHHHcCCcEEEEC
Confidence 5443 5789999999 599999999998 44443
No 198
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=69.45 E-value=38 Score=32.56 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=64.3
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH---HcCCCCCCCceeechh------hhcC-CCCCCCcceeEEEec
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAK---ECGILTSDGEAVEGPE------FRNM-SPADIIPKLQVMARS 515 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~---~lgi~~~~~~~~~g~~------~~~~-~~~~~~~~~~v~~~~ 515 (563)
+.++..+.|+.++++|+.|+-+|.|.+.....+++ ++||+-.+.. +..+. .... .....+.+-..|+
T Consensus 82 ie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~-~~~~~~~~~~~~~~~~~~~~~~~~GIlft-- 158 (252)
T PF11019_consen 82 IESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSS-FPEDGIISFPVFDSALSRAPSFYDGILFT-- 158 (252)
T ss_pred cchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccc-cccCcceecccccCCCCCCceeecCeEEe--
Confidence 67899999999999999999999999765554444 4666543222 11111 0000 0002222223343
Q ss_pred ChhhHHHHHHHHHHhcC---CEEEEEcCCccCHHHHhh
Q 044020 516 LPSDKHTLVTQLRNTFG---EVVAVTGDGTNDASALHE 550 (563)
Q Consensus 516 ~p~~K~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~ 550 (563)
.-.+|+..+..+-...| ..|++|-|....+..+..
T Consensus 159 ~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~ 196 (252)
T PF11019_consen 159 GGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEK 196 (252)
T ss_pred CCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHH
Confidence 34678888888776644 789999999887775544
No 199
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=62.17 E-value=61 Score=36.81 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhccCCchHHHHHHHHHHHHH
Q 044020 183 LIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMK 215 (563)
Q Consensus 183 ~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~ 215 (563)
+...+...++.+..+.|.++++++..+.....+
T Consensus 237 ~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak 269 (755)
T TIGR01647 237 LQFALVLLVGGIPIAMPAVLSVTMAVGAAELAK 269 (755)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHh
Confidence 344566777778888888888888887755444
No 200
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=60.08 E-value=71 Score=36.51 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=31.7
Q ss_pred CCcchHHHHHHHHhC-CCeEEEEcCCCHHHHHHHHHHcC
Q 044020 446 VRPGVKEAVQTCLEA-GITVRMVTGDNINTARAIAKECG 483 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~-gi~v~i~TGd~~~~a~~~a~~lg 483 (563)
+.+++.+++++|.+. +..|+|+|||+..........++
T Consensus 533 p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~ 571 (797)
T PLN03063 533 LHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN 571 (797)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC
Confidence 567889999999865 78999999999998888876543
No 201
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=59.37 E-value=50 Score=38.12 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=32.3
Q ss_pred CCcchHHHHHHHHhC-CCeEEEEcCCCHHHHHHHHHHcCC
Q 044020 446 VRPGVKEAVQTCLEA-GITVRMVTGDNINTARAIAKECGI 484 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~-gi~v~i~TGd~~~~a~~~a~~lgi 484 (563)
+.+++.+++++|.+. +..|+|+|||+..........+++
T Consensus 623 p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~L 662 (934)
T PLN03064 623 LHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFDM 662 (934)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCCc
Confidence 557889999999865 789999999999998888876543
No 202
>PTZ00445 p36-lilke protein; Provisional
Probab=58.25 E-value=6.8 Score=36.18 Aligned_cols=135 Identities=15% Similarity=0.223 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEE------------EecccCCCCcchHHHHHHHHhCCC
Q 044020 395 FRNITDVINGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIA------------VVGIKDPVRPGVKEAVQTCLEAGI 462 (563)
Q Consensus 395 ~~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG------------~i~~~d~~~~~~~~~I~~l~~~gi 462 (563)
.+......+.|.+.|.+++++-+. .++++ ...+-..++|+.+..+++|+++||
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D~D---------------nTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I 92 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASDFD---------------LTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNI 92 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEecch---------------hhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCC
Confidence 355667778888999998876532 23333 112223379999999999999999
Q ss_pred eEEEEcCCCHHHHHHHHHHcCCC-CCCCceeechhhhcCC-C-CCC-CcceeEEE------------------ecChhhH
Q 044020 463 TVRMVTGDNINTARAIAKECGIL-TSDGEAVEGPEFRNMS-P-ADI-IPKLQVMA------------------RSLPSDK 520 (563)
Q Consensus 463 ~v~i~TGd~~~~a~~~a~~lgi~-~~~~~~~~g~~~~~~~-~-~~~-~~~~~v~~------------------~~~p~~K 520 (563)
+|+++|=..... +. ......+.|.++-+.. . ... ..-..+|| ...|+.|
T Consensus 93 ~v~VVTfSd~~~---------~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK 163 (219)
T PTZ00445 93 KISVVTFSDKEL---------IPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDK 163 (219)
T ss_pred eEEEEEccchhh---------ccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccch
Confidence 999999655433 11 1233445555442211 0 000 00001121 1123343
Q ss_pred HHHHHHHHHhcC---CEEEEEcCCccCHHHHhhCCc
Q 044020 521 HTLVTQLRNTFG---EVVAVTGDGTNDASALHEADI 553 (563)
Q Consensus 521 ~~~v~~l~~~~g---~~v~~iGDg~ND~~~l~~a~v 553 (563)
..-++.+.+++| ++++++=|....+.+-+..|+
T Consensus 164 ~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi 199 (219)
T PTZ00445 164 SYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGY 199 (219)
T ss_pred HHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCC
Confidence 343344444434 789999999999998888776
No 203
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=57.71 E-value=51 Score=32.19 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=40.7
Q ss_pred EEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH---HcCCC
Q 044020 438 AVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAK---ECGIL 485 (563)
Q Consensus 438 G~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~---~lgi~ 485 (563)
|.+-..+.+-|++.+++..|++.|-+++++|.-+..+-+..++ ++|+.
T Consensus 31 GVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 31 GVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred cceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 7777789999999999999999999999999988777666665 56664
No 204
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=56.69 E-value=63 Score=37.70 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=28.0
Q ss_pred hHHHHHHHH----hCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 450 VKEAVQTCL----EAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 450 ~~~~I~~l~----~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
.++.++.++ ...+-++++|||+...+..+.++.|+.
T Consensus 789 l~~~~~~~~~~~~~~~igfv~aTGR~l~~~~~~l~~~~lp 828 (1050)
T TIGR02468 789 IKNIFEAVRKERMEGSSGFILSTSMTISEIQSFLKSGGLN 828 (1050)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCHHHHHHHHHhCCCC
Confidence 344445554 223789999999999999999999997
No 205
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=53.97 E-value=22 Score=31.36 Aligned_cols=44 Identities=20% Similarity=0.094 Sum_probs=38.9
Q ss_pred ccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 442 IKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 442 ~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
..-.+||++.+.+++|.+. +++++.|.-+..-|..+.+.++...
T Consensus 55 ~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~ 98 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDG 98 (156)
T ss_pred EEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCC
Confidence 4445899999999999965 9999999999999999999998763
No 206
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=53.11 E-value=37 Score=25.20 Aligned_cols=33 Identities=30% Similarity=0.290 Sum_probs=25.0
Q ss_pred cCeeEEEECCEEEEeec---CCcccCcEEEeCCCCe
Q 044020 23 KIFIQVTRDGQRQKVCT---YDLVVGDIVHLSIGDQ 55 (563)
Q Consensus 23 ~~~~~V~r~g~~~~i~~---~~L~~GDiI~v~~G~~ 55 (563)
...+.|-.+|..++++. .++.|||.|.+..|.-
T Consensus 16 ~~~A~v~~~G~~~~V~~~lv~~v~~Gd~VLVHaG~A 51 (68)
T PF01455_consen 16 GGMAVVDFGGVRREVSLALVPDVKVGDYVLVHAGFA 51 (68)
T ss_dssp TTEEEEEETTEEEEEEGTTCTSB-TT-EEEEETTEE
T ss_pred CCEEEEEcCCcEEEEEEEEeCCCCCCCEEEEecChh
Confidence 44677888999999875 5788999999999954
No 207
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=51.63 E-value=1.3e+02 Score=29.22 Aligned_cols=41 Identities=15% Similarity=0.345 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHhcCCEEEEEcCCccCH---HHHhhCCc-eEeec
Q 044020 517 PSDKHTLVTQLRNTFGEVVAVTGDGTNDA---SALHEADI-GLAMG 558 (563)
Q Consensus 517 p~~K~~~v~~l~~~~g~~v~~iGDg~ND~---~~l~~a~v-giamg 558 (563)
+++-.++++.+++. -..-+++|-|.|+. ..+..+|. |+.+|
T Consensus 187 ~~~~~~~i~~ir~~-t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 187 DKKLKKLIETIKKM-TNKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred cHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 34456777778776 44455669999955 44444534 78777
No 208
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=51.33 E-value=1.6e+02 Score=31.63 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=85.2
Q ss_pred ECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCcccccCCCCeEEecceeecCc--------
Q 044020 30 RDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMYEENPFLLAGTKVQGGS-------- 101 (563)
Q Consensus 30 r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~k~~~~~~i~~Gt~v~~g~-------- 101 (563)
+-|....+...|.+|-|.+.++. ..-+|--.|.|.+..+.-.. |+. ...+.+++.|+....-.
T Consensus 53 ~~GDiv~v~~G~~iP~Dg~vl~g--~~~vdes~LTGEs~pv~k~~--g~~-----v~~gs~~~~G~~~~~v~~~~~~s~~ 123 (499)
T TIGR01494 53 VPGDIVLVKSGEIVPADGVLLSG--SCFVDESNLTGESVPVLKTA--GDA-----VFAGTYVFNGTLIVVVSATGPNTFG 123 (499)
T ss_pred CCCCEEEECCCCEeeeeEEEEEc--cEEEEcccccCCCCCeeecc--CCc-----cccCcEEeccEEEEEEEEeccccHH
Confidence 45778899999999999999876 56667677777764333321 332 12455688888665321
Q ss_pred -EEEEEEEEcccchhHHHHHHhccCCCC-CCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--Hhhcccccccccccc
Q 044020 102 -GKMLVTTVGMRTEWGKLMETLNEGGED-ETPLQVKL-NGVATIIGKIELFFSVLEFLVLIGR--FLGEKVIHNEFTDWS 176 (563)
Q Consensus 102 -~~~~V~~tg~~t~~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 176 (563)
..+.++++|.++ +.. +....+.. ..+..+...+++...++.+...... +.
T Consensus 124 ~~i~~~v~~~~~~------------k~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~------------- 178 (499)
T TIGR01494 124 GKIAVVVYTGFET------------KTPLQPKLDRLSDIIFILFVLLIALAVFLFWAIGLWDPNSIF------------- 178 (499)
T ss_pred HHHHHHHHhcCCC------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHH-------------
Confidence 122233444443 222 22223333 3444444444444333333222110 11
Q ss_pred chhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHH
Q 044020 177 SADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAMK 215 (563)
Q Consensus 177 ~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~~ 215 (563)
..+..++...+....+++|.++|++...+.....+
T Consensus 179 ----~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~ 213 (499)
T TIGR01494 179 ----KIFLRALILLVIAIPIALPLAVTIALAVGDARLAK 213 (499)
T ss_pred ----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 13566677788888999999999999998766554
No 209
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=50.43 E-value=28 Score=32.68 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHhccCeeEEEECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeC
Q 044020 3 TAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGH 66 (563)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~ 66 (563)
..+..+.+..+.++..+.....+- ....+...+ +.-|....+...|.+|-|.+.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~v----~r~~~~~~i~~~~L~~GDiI~l~~g 63 (230)
T PF00122_consen 6 ILLSNIIEIWQEYRSKKQLKKLNN--LNPQKKVTV----IRDGRWQKIPSSELVPGDIIILKAG 63 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT--TSSSEEEEE----EETTEEEEEEGGGT-TTSEEEEETT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc--cCCCccEEE----EeccccccchHhhccceeeeecccc
Confidence 345555655555555544433210 011111222 2336777888888888888887644
No 210
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=49.61 E-value=32 Score=28.53 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGI 484 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi 484 (563)
-.+++.++++.++++|++++.+|++.+ ....+.+.|.
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~ 91 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGV 91 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCC
Confidence 456899999999999999999998764 5556766654
No 211
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=49.35 E-value=1e+02 Score=29.45 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=51.4
Q ss_pred cchHHHHHHHHhCCCeEEEEcCC--CHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHH
Q 044020 448 PGVKEAVQTCLEAGITVRMVTGD--NINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVT 525 (563)
Q Consensus 448 ~~~~~~I~~l~~~gi~v~i~TGd--~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~ 525 (563)
++..+.++.+++.|++++++-.- +.+....+++...-.- .+ +.. ..+....+.+-...++
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l----~m-sv~-------------~~~g~~~~~~~~~~i~ 177 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFI----YY-GLR-------------PATGVPLPVSVERNIK 177 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEE----EE-EeC-------------CCCCCCchHHHHHHHH
Confidence 56778899999999985554433 4566677777643210 00 000 0111111333344555
Q ss_pred HHHHhcCCEEEEEcCCc---cCHHHHhhCCc-eEeec
Q 044020 526 QLRNTFGEVVAVTGDGT---NDASALHEADI-GLAMG 558 (563)
Q Consensus 526 ~l~~~~g~~v~~iGDg~---ND~~~l~~a~v-giamg 558 (563)
.+++...+....+|-|. +|+..+..++. |+.+|
T Consensus 178 ~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 178 RVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred HHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 55554223346678888 47777766665 77777
No 212
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=48.94 E-value=47 Score=32.69 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=29.3
Q ss_pred CcchHHHHHHHHhCCCeEEEEcCCCHH-HHHHHHHHcCCC
Q 044020 447 RPGVKEAVQTCLEAGITVRMVTGDNIN-TARAIAKECGIL 485 (563)
Q Consensus 447 ~~~~~~~I~~l~~~gi~v~i~TGd~~~-~a~~~a~~lgi~ 485 (563)
.+++...-+.|+..|.+++++|.+... ..+..++.++..
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~~ 101 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGLQ 101 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhhC
Confidence 456778888899999999999987654 445666666654
No 213
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=46.83 E-value=24 Score=29.31 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=30.6
Q ss_pred CCcchHHHHHHHHhCCCe-EEEEcCCCHHHHHHHHHHcCCC
Q 044020 446 VRPGVKEAVQTCLEAGIT-VRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~-v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
..+.+.+.++++.+.|++ +|+.+|...+.+...|++.|+.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 456789999999999996 9999999999999999998874
No 214
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=46.37 E-value=16 Score=33.44 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHH
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNIN 473 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~ 473 (563)
++-|++.+++++|.+.|..++++|+++..
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 47789999999999999988888888643
No 215
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.69 E-value=1.5e+02 Score=28.59 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=53.8
Q ss_pred ccCCCCcchHHHHHHHHhCCCeEE-EEcCCC-HHHHHHHHHHcC-CCCCCCceeechhhhcCCCCCCCcceeEEE-e-cC
Q 044020 442 IKDPVRPGVKEAVQTCLEAGITVR-MVTGDN-INTARAIAKECG-ILTSDGEAVEGPEFRNMSPADIIPKLQVMA-R-SL 516 (563)
Q Consensus 442 ~~d~~~~~~~~~I~~l~~~gi~v~-i~TGd~-~~~a~~~a~~lg-i~~~~~~~~~g~~~~~~~~~~~~~~~~v~~-~-~~ 516 (563)
+.|.+-++..+.++.+++.|+..+ +++-.+ .+....+++... +. .+++-.. +-. + ..
T Consensus 121 ipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfi----y~vs~~G--------------~TG~~~~~ 182 (256)
T TIGR00262 121 VADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFV----YLVSRAG--------------VTGARNRA 182 (256)
T ss_pred ECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCE----EEEECCC--------------CCCCcccC
Confidence 334455777888888888888744 555544 445566666543 32 1111000 000 0 01
Q ss_pred hhhHHHHHHHHHHhcCCEEEEEcCCcc---CHHHHhhCCc-eEeec
Q 044020 517 PSDKHTLVTQLRNTFGEVVAVTGDGTN---DASALHEADI-GLAMG 558 (563)
Q Consensus 517 p~~K~~~v~~l~~~~g~~v~~iGDg~N---D~~~l~~a~v-giamg 558 (563)
+.+-.+.++.+++..+. -+++|=|.+ |+..+..+|. |+.+|
T Consensus 183 ~~~~~~~i~~lr~~~~~-pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 183 ASALNELVKRLKAYSAK-PVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred ChhHHHHHHHHHhhcCC-CEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 23345666777765333 355688888 5666555422 77777
No 216
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=44.47 E-value=2.4e+02 Score=32.99 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=9.4
Q ss_pred CcEEEeCCCCeeeceEEEEe
Q 044020 45 GDIVHLSIGDQVPAYGIFIS 64 (563)
Q Consensus 45 GDiI~v~~G~~iPaD~~ll~ 64 (563)
|....+...|.+|-|.++++
T Consensus 81 g~~~~I~~~~Lv~GDiv~l~ 100 (917)
T TIGR01116 81 GRWSVIKAKDLVPGDIVELA 100 (917)
T ss_pred CEEEEEEHHHCCCCCEEEEC
Confidence 44444444444444444444
No 217
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=43.84 E-value=2.9e+02 Score=32.66 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=96.9
Q ss_pred chhhHHHHHHHHHHHHHH----H---h-ccCeeEE----EECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceE
Q 044020 2 VTAISDYKQSLQFRDLDR----E---K-KKIFIQV----TRDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLL 69 (563)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~----~---~-~~~~~~V----~r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~ 69 (563)
++.+.+++.++..+++.+ . + +.....+ +.-|-...+...+.+|.|.+.++... +-+|=-.|.|.+.-
T Consensus 120 i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~~~-l~VdeS~LTGES~p 198 (997)
T TIGR01106 120 FSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQG-CKVDNSSLTGESEP 198 (997)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEccC-cEEEccccCCCCCc
Confidence 467888988888887775 1 1 1222222 24577889999999999999998653 34555555555533
Q ss_pred EEeccCcCCCCcccc----cCCCCeEEecceeecCcEEEEEEEEcccchhHHHHHHhccC-CCCCCchHHHHHHHHHHHH
Q 044020 70 IDESSLSGQSEPRYM----YEENPFLLAGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEG-GEDETPLQVKLNGVATIIG 144 (563)
Q Consensus 70 Vdes~lTGes~p~~k----~~~~~~i~~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~ 144 (563)
|.-..-..+..|... ..|. .+..|+...--...+.=+..|.-. ++.+..... ..-+..+++..+.+..+..
T Consensus 199 v~K~~~~~~~~~~~~~n~l~~Gt-~v~~G~~~~~V~~tG~~T~~g~i~---~~~~~~~~~~~pl~~~~~~~~~~~~~~~~ 274 (997)
T TIGR01106 199 QTRSPEFTHENPLETRNIAFFST-NCVEGTARGIVVNTGDRTVMGRIA---SLASGLENGKTPIAIEIEHFIHIITGVAV 274 (997)
T ss_pred eeccCCCcccCccccCCeEEecc-EeeeeeEEEEEEEccccchhhHHH---hhhhhcccCCCcHHHHHHHHHHHHHHHHH
Confidence 332211101112211 1233 366665322111111222222211 222221111 1112345555666666655
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 044020 145 KIELFFSVLEFLVLIGRFLGEKVIHNEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAM 214 (563)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~ 214 (563)
.+++++.++.++....+. ..+...+...++.+..++|..++++...+.....
T Consensus 275 ~~~~~~~~~~~~~~~~~~------------------~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m~ 326 (997)
T TIGR01106 275 FLGVSFFILSLILGYTWL------------------EAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMA 326 (997)
T ss_pred HHHHHHHHHHHHhcCCHH------------------HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 555554444433321111 0223345556666888999999998888765433
No 218
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=43.71 E-value=56 Score=25.18 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=38.4
Q ss_pred EecccCCCCcchHHHHHHHHhCCCeEEE-EcCCCHHHHHHHHHHcCCC
Q 044020 439 VVGIKDPVRPGVKEAVQTCLEAGITVRM-VTGDNINTARAIAKECGIL 485 (563)
Q Consensus 439 ~i~~~d~~~~~~~~~I~~l~~~gi~v~i-~TGd~~~~a~~~a~~lgi~ 485 (563)
++.+.+...+.+.+..+.|++.|+++.+ ..+++...-...|++.|+.
T Consensus 6 ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 6 VIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 3445666778899999999999999988 5777888888889998875
No 219
>PRK04302 triosephosphate isomerase; Provisional
Probab=43.33 E-value=1.8e+02 Score=27.30 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=53.0
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVT 525 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~ 525 (563)
+.++..+.++.+++.|+.+++++|+. ..+..+ .+.+-+ -+.+..... ...-.......|++-.++++
T Consensus 99 ~~~e~~~~v~~a~~~Gl~~I~~v~~~-~~~~~~-~~~~~~---~I~~~p~~~--------igt~~~~~~~~~~~i~~~~~ 165 (223)
T PRK04302 99 TLADIEAVVERAKKLGLESVVCVNNP-ETSAAA-AALGPD---YVAVEPPEL--------IGTGIPVSKAKPEVVEDAVE 165 (223)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEcCCH-HHHHHH-hcCCCC---EEEEeCccc--------cccCCCCCcCCHHHHHHHHH
Confidence 44568889999999999999999983 333332 233211 000000000 00000000134666666677
Q ss_pred HHHHhcCCEEEEEcCCccC---HHHHhhCCc-eEeec
Q 044020 526 QLRNTFGEVVAVTGDGTND---ASALHEADI-GLAMG 558 (563)
Q Consensus 526 ~l~~~~g~~v~~iGDg~ND---~~~l~~a~v-giamg 558 (563)
.+++...+.-...|=|.++ +..+..+|+ |+.+|
T Consensus 166 ~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 166 AVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 7776323344455877754 445555655 78888
No 220
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=42.06 E-value=84 Score=29.30 Aligned_cols=106 Identities=10% Similarity=0.069 Sum_probs=68.2
Q ss_pred EEecccCCCCcc--hHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEec
Q 044020 438 AVVGIKDPVRPG--VKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARS 515 (563)
Q Consensus 438 G~i~~~d~~~~~--~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~ 515 (563)
|.+-+++ ++|+ .++.+-.|++.+ -|+.|.-...-|..+.+++||......++.-..+.-+ +-.+.|..
T Consensus 92 ~~LPlq~-LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~-------~~~~vcKP 161 (244)
T KOG3109|consen 92 GRLPLQD-LKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPI-------EKTVVCKP 161 (244)
T ss_pred ccCcHhh-cCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCC-------CCceeecC
Confidence 5556666 6665 677777777775 7888888888999999999997644333332222110 12266665
Q ss_pred ChhhHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCc
Q 044020 516 LPSDKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADI 553 (563)
Q Consensus 516 ~p~~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~v 553 (563)
+++.-....+...-.-.+.+.++-|+.+-+..-+..|.
T Consensus 162 ~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl 199 (244)
T KOG3109|consen 162 SEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGL 199 (244)
T ss_pred CHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccc
Confidence 55543444443332224789999999988887777665
No 221
>PLN02591 tryptophan synthase
Probab=41.55 E-value=2.2e+02 Score=27.27 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=53.3
Q ss_pred CCcchHHHHHHHHhCCCe-EEEEcCCC-HHHHHHHHHHcC-CCCCCCcee--echhhhcCCCCCCCcceeEEEecChhhH
Q 044020 446 VRPGVKEAVQTCLEAGIT-VRMVTGDN-INTARAIAKECG-ILTSDGEAV--EGPEFRNMSPADIIPKLQVMARSLPSDK 520 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~-v~i~TGd~-~~~a~~~a~~lg-i~~~~~~~~--~g~~~~~~~~~~~~~~~~v~~~~~p~~K 520 (563)
+-++..+..+.+++.|+. +.++|-.. .+..+.+++... +. .++ .|.. --....|.+-
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI----Y~Vs~~GvT--------------G~~~~~~~~~ 177 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV----YLVSSTGVT--------------GARASVSGRV 177 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE----EEeeCCCCc--------------CCCcCCchhH
Confidence 346677777788888876 44444444 345666666542 21 000 0000 0001125556
Q ss_pred HHHHHHHHHhcCCEEEEEcCCcc---CHHHHhhC-CceEeec
Q 044020 521 HTLVTQLRNTFGEVVAVTGDGTN---DASALHEA-DIGLAMG 558 (563)
Q Consensus 521 ~~~v~~l~~~~g~~v~~iGDg~N---D~~~l~~a-~vgiamg 558 (563)
.++++.+++. ...-+++|-|.+ |+..+... -=|+.+|
T Consensus 178 ~~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 178 ESLLQELKEV-TDKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred HHHHHHHHhc-CCCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 6778888886 566677799998 66666655 3377676
No 222
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=41.27 E-value=1.3e+02 Score=25.33 Aligned_cols=84 Identities=18% Similarity=0.252 Sum_probs=51.1
Q ss_pred ccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHH
Q 044020 442 IKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKH 521 (563)
Q Consensus 442 ~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~ 521 (563)
+.+++.++..+.+++ |+.+.+....+.......++.... ++....+.-..
T Consensus 3 i~~~~~~~~~~~l~~----~~~v~~~~~~~~~~~~~~l~~~d~--------------------------ii~~~~~~~~~ 52 (133)
T PF00389_consen 3 ITDPLPDEEIERLEE----GFEVEFCDSPSEEELAERLKDADA--------------------------IIVGSGTPLTA 52 (133)
T ss_dssp ESSS-SHHHHHHHHH----TSEEEEESSSSHHHHHHHHTTESE--------------------------EEESTTSTBSH
T ss_pred EeccCCHHHHHHHHC----CceEEEeCCCCHHHHHHHhCCCeE--------------------------EEEcCCCCcCH
Confidence 445666666665555 888988886666655555544332 44444342234
Q ss_pred HHHHHHHHhcCCEEEEEcCCcc--CHHHHhhCCceEee
Q 044020 522 TLVTQLRNTFGEVVAVTGDGTN--DASALHEADIGLAM 557 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg~N--D~~~l~~a~vgiam 557 (563)
++++.+.. -+-+...|-|.+ |+++++.-|+-|+=
T Consensus 53 ~~l~~~~~--Lk~I~~~~~G~d~id~~~a~~~gI~V~n 88 (133)
T PF00389_consen 53 EVLEAAPN--LKLISTAGAGVDNIDLEAAKERGIPVTN 88 (133)
T ss_dssp HHHHHHTT---SEEEESSSSCTTB-HHHHHHTTSEEEE
T ss_pred HHHhccce--eEEEEEcccccCcccHHHHhhCeEEEEE
Confidence 55565532 367888899988 88888888887753
No 223
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=41.15 E-value=12 Score=33.88 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=12.2
Q ss_pred eecccccccccCc
Q 044020 239 ICTDKTRMLTTNH 251 (563)
Q Consensus 239 i~~DKTGTLT~~~ 251 (563)
+|||.+||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999988
No 224
>PRK11507 ribosome-associated protein; Provisional
Probab=39.85 E-value=37 Score=25.30 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=22.8
Q ss_pred eEEEECCEEEEeecCCcccCcEEEeCCC
Q 044020 26 IQVTRDGQRQKVCTYDLVVGDIVHLSIG 53 (563)
Q Consensus 26 ~~V~r~g~~~~i~~~~L~~GDiI~v~~G 53 (563)
-.|.-||+...-.-..|.|||+|.+...
T Consensus 37 g~V~VNGeve~rRgkKl~~GD~V~~~g~ 64 (70)
T PRK11507 37 GQVKVDGAVETRKRCKIVAGQTVSFAGH 64 (70)
T ss_pred CceEECCEEecccCCCCCCCCEEEECCE
Confidence 3566788888888899999999998653
No 225
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=39.48 E-value=52 Score=23.39 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred HhccCeeEEEECCEEEEeecCCcccCcEEEe
Q 044020 20 EKKKIFIQVTRDGQRQKVCTYDLVVGDIVHL 50 (563)
Q Consensus 20 ~~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v 50 (563)
......+.| ||+...-+...|.+||.|.|
T Consensus 30 li~~G~V~V--Ng~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 30 FLQENEVLV--NGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred HHHcCCEEE--CCEEccCCCCCCCCCCEEEe
Confidence 344445555 88776677889999999876
No 226
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=39.47 E-value=66 Score=26.86 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=43.3
Q ss_pred CCceEEEEecccCCCCcchHHHHHHHHhCCC-e-EEEEcCCCHHHHHHHHHHcCCCC
Q 044020 432 SGYTLIAVVGIKDPVRPGVKEAVQTCLEAGI-T-VRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 432 ~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi-~-v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
.+-.++++-.......+.+++.++.|+++|. + .+++-|..+..-...+++.|++.
T Consensus 49 ~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~ 105 (122)
T cd02071 49 EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAE 105 (122)
T ss_pred cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCE
Confidence 3446778777778888899999999999977 3 56777777766677788999875
No 227
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=39.04 E-value=2.7e+02 Score=24.83 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=61.6
Q ss_pred chHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChh--hHHHHHHH
Q 044020 449 GVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPS--DKHTLVTQ 526 (563)
Q Consensus 449 ~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~--~K~~~v~~ 526 (563)
...++++.+.+++.-.++-.|.+...|..++.++.-...............+. -....+....+.. +-.++++.
T Consensus 19 ~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~----~~Dv~I~iS~sG~t~~~i~~~~~ 94 (179)
T TIGR03127 19 ELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIK----KGDLLIAISGSGETESLVTVAKK 94 (179)
T ss_pred HHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCC----CCCEEEEEeCCCCcHHHHHHHHH
Confidence 46677888888876666677888888888888774333222222111111111 1222344444443 44678888
Q ss_pred HHHhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 527 LRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 527 l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
.+++ |..|+.+-+..+ .|+-+.||+.+.+.
T Consensus 95 ak~~-g~~ii~IT~~~~-s~la~~ad~~l~~~ 124 (179)
T TIGR03127 95 AKEI-GATVAAITTNPE-STLGKLADVVVEIP 124 (179)
T ss_pred HHHC-CCeEEEEECCCC-CchHHhCCEEEEeC
Confidence 8887 877766665443 56667889888765
No 228
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=39.02 E-value=35 Score=27.35 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=22.7
Q ss_pred EEEECCEEEEeecCCcccCcEEEeCCCCee
Q 044020 27 QVTRDGQRQKVCTYDLVVGDIVHLSIGDQV 56 (563)
Q Consensus 27 ~V~r~g~~~~i~~~~L~~GDiI~v~~G~~i 56 (563)
+|.=||... .|+.++.+||+|.|.-|...
T Consensus 35 rV~vNG~~a-KpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 35 RVKVNGQRA-KPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred eEEECCEEc-ccccccCCCCEEEEEeCCcE
Confidence 344466554 89999999999999998864
No 229
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=38.02 E-value=14 Score=30.71 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=43.0
Q ss_pred CCCceEEEEecccCCCCcchHHHHHHHHhCCC--eEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 431 DSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGI--TVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 431 ~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi--~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
+.+..++|+-.....-.+.+++.++.+++.+- ..+++-|.........+++.|.+.
T Consensus 48 ~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~ 105 (119)
T cd02067 48 EEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDA 105 (119)
T ss_pred HcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeE
Confidence 45567888888777777889999999999976 357788876665556889999863
No 230
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=37.80 E-value=2.2e+02 Score=26.05 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=24.0
Q ss_pred hHHHHHHHHhCCCeEEEEc-------CC------CHHHHHHHHHHcCCCC
Q 044020 450 VKEAVQTCLEAGITVRMVT-------GD------NINTARAIAKECGILT 486 (563)
Q Consensus 450 ~~~~I~~l~~~gi~v~i~T-------Gd------~~~~a~~~a~~lgi~~ 486 (563)
..-++..+++.|.+|+-++ ++ +...++..|+.+|+..
T Consensus 12 S~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl 61 (194)
T cd01994 12 SCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPL 61 (194)
T ss_pred HHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcE
Confidence 3445666666777654443 22 4568888999999864
No 231
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=37.54 E-value=36 Score=24.04 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=17.5
Q ss_pred cchHHHHHHHHhCCCeEEEEcCC
Q 044020 448 PGVKEAVQTCLEAGITVRMVTGD 470 (563)
Q Consensus 448 ~~~~~~I~~l~~~gi~v~i~TGd 470 (563)
++-++.++.|.++|++|-|.|-+
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~ 24 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYS 24 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HH
T ss_pred cHHHHHHHHHHHCCCeEEecCcH
Confidence 56789999999999999999854
No 232
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=37.17 E-value=29 Score=28.97 Aligned_cols=34 Identities=18% Similarity=0.027 Sum_probs=26.5
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIA 479 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a 479 (563)
-.+++.++++.++++|.+++.+|+.+.......+
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~a 91 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGSTLAREA 91 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhC
Confidence 3457999999999999999999998654443333
No 233
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=37.16 E-value=2.4e+02 Score=23.35 Aligned_cols=107 Identities=16% Similarity=0.082 Sum_probs=61.1
Q ss_pred hHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCC-CCCCCcceeEEEe--cChhhHHHHHHH
Q 044020 450 VKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMS-PADIIPKLQVMAR--SLPSDKHTLVTQ 526 (563)
Q Consensus 450 ~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~-~~~~~~~~~v~~~--~~p~~K~~~v~~ 526 (563)
..++++.+.+++.-.++-+|.....+..++..+.........+.+....... ....-....++.. -.+.+-.+.++.
T Consensus 3 i~~~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~ 82 (139)
T cd05013 3 LEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEI 82 (139)
T ss_pred HHHHHHHHHhCCEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 5677888888887788888888888888888776544333333332221100 0001112223332 234456678888
Q ss_pred HHHhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 527 LRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 527 l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
++++ |-.++.+.+.. +.++-+.+|..+-..
T Consensus 83 a~~~-g~~iv~iT~~~-~~~l~~~~d~~i~~~ 112 (139)
T cd05013 83 AKER-GAKVIAITDSA-NSPLAKLADIVLLVS 112 (139)
T ss_pred HHHc-CCeEEEEcCCC-CChhHHhcCEEEEcC
Confidence 8887 76666655543 244556788776543
No 234
>PF15584 Imm44: Immunity protein 44
Probab=36.84 E-value=14 Score=28.80 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.0
Q ss_pred cCcEEEeCCCCeeeceEEEE
Q 044020 44 VGDIVHLSIGDQVPAYGIFI 63 (563)
Q Consensus 44 ~GDiI~v~~G~~iPaD~~ll 63 (563)
+.+-..|+.|+.||||||-=
T Consensus 13 ~~~~~~I~SG~~iP~~GIwE 32 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIWE 32 (94)
T ss_pred CCCCCEEecCCCcccCCeEc
Confidence 44567889999999999853
No 235
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=36.35 E-value=2.4e+02 Score=26.44 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=33.2
Q ss_pred EecccCCCCcchHHHHHHHHhCCCeEEEE--cCCCHHHHHHHHHHcCCC
Q 044020 439 VVGIKDPVRPGVKEAVQTCLEAGITVRMV--TGDNINTARAIAKECGIL 485 (563)
Q Consensus 439 ~i~~~d~~~~~~~~~I~~l~~~gi~v~i~--TGd~~~~a~~~a~~lgi~ 485 (563)
++.+.-+-.+...++++.+|+.|+++.++ -+-+.....++...+...
T Consensus 84 ~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~v 132 (220)
T PRK08883 84 MITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLI 132 (220)
T ss_pred EEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeE
Confidence 44455444567889999999999996555 445677777888877643
No 236
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=35.50 E-value=36 Score=26.83 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEECCEEEEeecCCcccCcEEEeC
Q 044020 26 IQVTRDGQRQKVCTYDLVVGDIVHLS 51 (563)
Q Consensus 26 ~~V~r~g~~~~i~~~~L~~GDiI~v~ 51 (563)
..+.+++..+.+.+++|++||.|.+.
T Consensus 74 ~~~~~~~~~~w~~a~~l~~gd~v~~~ 99 (100)
T smart00306 74 LLVRDGGKLVWVFASELKPGDYVLVP 99 (100)
T ss_pred EEEecCCcEEEEEHHHCCCCCEEEec
Confidence 34445666678889999999999874
No 237
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=35.43 E-value=24 Score=25.95 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=14.5
Q ss_pred EEEECCEEEEeecCCcccCcEEEeCCCC
Q 044020 27 QVTRDGQRQKVCTYDLVVGDIVHLSIGD 54 (563)
Q Consensus 27 ~V~r~g~~~~i~~~~L~~GDiI~v~~G~ 54 (563)
.|.-||+...-.-..|.|||+|.+ .|+
T Consensus 34 ~V~VNGe~e~rrg~Kl~~GD~V~~-~~~ 60 (65)
T PF13275_consen 34 EVKVNGEVETRRGKKLRPGDVVEI-DGE 60 (65)
T ss_dssp HHEETTB----SS----SSEEEEE-TTE
T ss_pred ceEECCEEccccCCcCCCCCEEEE-CCE
Confidence 455688888888889999999999 443
No 238
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=35.41 E-value=89 Score=30.84 Aligned_cols=141 Identities=12% Similarity=0.145 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhhccCCCCCC----------------CCCC-CCCceEEEEecccCCCCcchHHHHHHHH
Q 044020 396 RNITDVINGFASEALRTLCLAFKDLNDSSNE----------------NNIP-DSGYTLIAVVGIKDPVRPGVKEAVQTCL 458 (563)
Q Consensus 396 ~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~----------------~~~~-~~~~~~lG~i~~~d~~~~~~~~~I~~l~ 458 (563)
.+++..+.++.++||.++.+..+.=++-... ...+ ..+..-++++.-.-...++..+.++.|+
T Consensus 100 ~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~ 179 (298)
T PRK01045 100 TKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKLEVKDPDKLALVTQTTLSVDDTAEIIAALK 179 (298)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEEcCHHHHhhcccCCCCcEEEEEcCCCcHHHHHHHHHHHH
Confidence 5678889999999999998886543321100 0011 0122335555555555556666666666
Q ss_pred hCCCeE--------EEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHh
Q 044020 459 EAGITV--------RMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNT 530 (563)
Q Consensus 459 ~~gi~v--------~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~ 530 (563)
+..-.+ .-+|-+.+.++..+|+++.+.- |....+...-.++.+..++.
T Consensus 180 ~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~mi------------------------VVGg~~SsNT~kL~~i~~~~ 235 (298)
T PRK01045 180 ERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVI------------------------VVGSKNSSNSNRLREVAEEA 235 (298)
T ss_pred HhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEE------------------------EECCCCCccHHHHHHHHHHH
Confidence 554222 3355555666666666655421 44444444445555555555
Q ss_pred cCCEEEEEcCC-ccCHHHHhhC-CceEeecCCCC
Q 044020 531 FGEVVAVTGDG-TNDASALHEA-DIGLAMGIAGT 562 (563)
Q Consensus 531 ~g~~v~~iGDg-~ND~~~l~~a-~vgiamg~~~~ 562 (563)
+..+..|.+- .-|...|+.. -|||.-| .++
T Consensus 236 -~~~t~~Ie~~~el~~~~l~~~~~VGitaG-AST 267 (298)
T PRK01045 236 -GAPAYLIDDASEIDPEWFKGVKTVGVTAG-ASA 267 (298)
T ss_pred -CCCEEEECChHHCcHHHhcCCCEEEEEec-CCC
Confidence 6556666653 2255566533 5688777 443
No 239
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=35.16 E-value=1.6e+02 Score=28.88 Aligned_cols=140 Identities=16% Similarity=0.203 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhhccCCCCCCC----------------CCCCCCceEEEEecccCCCCcchHHHHHHHHh
Q 044020 396 RNITDVINGFASEALRTLCLAFKDLNDSSNEN----------------NIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLE 459 (563)
Q Consensus 396 ~~i~~~~~~~~~~G~r~i~~a~~~l~~~~~~~----------------~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~ 459 (563)
.+++..+.++.++||.++.+..+.=++-.... ..+. ...-++++.-.-...++..+.++.|++
T Consensus 100 ~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~-~~~~v~vvsQTT~~~~~~~~i~~~l~~ 178 (280)
T TIGR00216 100 TKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENFK-VEDLLGVVSQTTLSQEDTKEIVAELKA 178 (280)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhCC-CCCcEEEEEcCCCcHHHHHHHHHHHHH
Confidence 56788899999999999998865433321000 0110 112366666556666677777777776
Q ss_pred CC----C----eEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhc
Q 044020 460 AG----I----TVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTF 531 (563)
Q Consensus 460 ~g----i----~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~ 531 (563)
.. + .+.-+|-+.+.++..+|+++.+.- |....+...-.++.+..++.
T Consensus 179 ~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~mi------------------------VVGg~nSsNT~rL~ei~~~~- 233 (280)
T TIGR00216 179 RVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMI------------------------VIGGKNSSNTTRLYEIAEEH- 233 (280)
T ss_pred hCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEE------------------------EECCCCCchHHHHHHHHHHh-
Confidence 55 1 255667777777888888765432 44444455555566666665
Q ss_pred CCEEEEEcCC-ccCHHHHhhCC-ceEeecCCCC
Q 044020 532 GEVVAVTGDG-TNDASALHEAD-IGLAMGIAGT 562 (563)
Q Consensus 532 g~~v~~iGDg-~ND~~~l~~a~-vgiamg~~~~ 562 (563)
|..+..|.+. .-|..+|+.++ |||.-| .++
T Consensus 234 ~~~t~~Ie~~~el~~~~l~~~~~VGiTAG-AST 265 (280)
T TIGR00216 234 GPPSYLIETAEELPEEWLKGVKVVGITAG-AST 265 (280)
T ss_pred CCCEEEECChHHCCHHHhCCCCEEEEEec-CCC
Confidence 6667777664 33667777654 588777 443
No 240
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=34.66 E-value=27 Score=29.28 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=27.1
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIA 479 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a 479 (563)
-.+++.++++.++++|++++.+|+.+.......|
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~a 92 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLS 92 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhC
Confidence 4567999999999999999999997764444433
No 241
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=34.25 E-value=3e+02 Score=25.67 Aligned_cols=72 Identities=28% Similarity=0.294 Sum_probs=45.3
Q ss_pred hHHHHHHHHhCCCeEE-EEc------------CCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecC
Q 044020 450 VKEAVQTCLEAGITVR-MVT------------GDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSL 516 (563)
Q Consensus 450 ~~~~I~~l~~~gi~v~-i~T------------Gd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 516 (563)
..-++..++++|+.|+ ++| +.....++..|+.+|+.. ....++
T Consensus 10 S~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~------------------------~~i~~~ 65 (218)
T TIGR03679 10 SNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPL------------------------VKIETS 65 (218)
T ss_pred HHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCE------------------------EEEECC
Confidence 3345667777888774 434 345678899999999874 222222
Q ss_pred ---hh---hHHHHHHHHHHhcCCEEEEEcCCccCHH
Q 044020 517 ---PS---DKHTLVTQLRNTFGEVVAVTGDGTNDAS 546 (563)
Q Consensus 517 ---p~---~K~~~v~~l~~~~g~~v~~iGDg~ND~~ 546 (563)
+. .-...++.+++. |-..++.||-.-|.+
T Consensus 66 ~~~~~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~ 100 (218)
T TIGR03679 66 GEKEKEVEDLKGALKELKRE-GVEGIVTGAIASRYQ 100 (218)
T ss_pred CCChHHHHHHHHHHHHHHHc-CCCEEEECCcccHhH
Confidence 22 233455555565 778888898776653
No 242
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=34.25 E-value=28 Score=30.75 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=35.3
Q ss_pred eEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q 044020 435 TLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIA 479 (563)
Q Consensus 435 ~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a 479 (563)
.++|+-.-- =.+++.++++.+++.|++++-+||++--..+.++
T Consensus 112 vLigISTSG--NS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~ 154 (176)
T COG0279 112 VLIGISTSG--NSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLL 154 (176)
T ss_pred EEEEEeCCC--CCHHHHHHHHHHHHcCCEEEEEecCCCccccccc
Confidence 677765544 4578999999999999999999999887766666
No 243
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.03 E-value=67 Score=30.55 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=34.8
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCC
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSD 488 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~ 488 (563)
+|++..+....|++.+|++.+.|..-......+-++.....++
T Consensus 139 lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn 181 (298)
T KOG3128|consen 139 LREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPN 181 (298)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCcc
Confidence 6788999999999999999999988777777777766544443
No 244
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=33.93 E-value=82 Score=28.38 Aligned_cols=93 Identities=11% Similarity=0.205 Sum_probs=55.9
Q ss_pred ccCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChh---
Q 044020 442 IKDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPS--- 518 (563)
Q Consensus 442 ~~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~--- 518 (563)
+.-++-|++.++|++-+++|++|.+-|..+..+-+-+.. +... | ++..+ +.-|...+-.
T Consensus 100 lkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fg-----hs~a----g-dL~~l--------fsGyfDttiG~Kr 161 (229)
T COG4229 100 LKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFG-----HSDA----G-DLNSL--------FSGYFDTTIGKKR 161 (229)
T ss_pred cccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhc-----cccc----c-cHHhh--------hcceeeccccccc
Confidence 455788999999999999999999988876554332222 1100 0 00000 0012222222
Q ss_pred ---hHHHHHHHHHHhcCCEEEEEcCCccCHHHHhhCCc
Q 044020 519 ---DKHTLVTQLRNTFGEVVAVTGDGTNDASALHEADI 553 (563)
Q Consensus 519 ---~K~~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~v 553 (563)
.-.++++...-. ..+++++.|..+.+.+-+.+|+
T Consensus 162 E~~SY~kIa~~iGl~-p~eilFLSDn~~EL~AA~~vGl 198 (229)
T COG4229 162 ESQSYAKIAGDIGLP-PAEILFLSDNPEELKAAAGVGL 198 (229)
T ss_pred cchhHHHHHHhcCCC-chheEEecCCHHHHHHHHhcch
Confidence 233455555444 5899999999998887665554
No 245
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=33.64 E-value=7.2e+02 Score=29.63 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 044020 183 LIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAM 214 (563)
Q Consensus 183 ~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~ 214 (563)
++.++...++++..++|.++.+++..+...-.
T Consensus 399 ~l~~l~iiv~~vP~~LP~~~ti~l~~~~~rL~ 430 (1054)
T TIGR01657 399 ILRSLDIITIVVPPALPAELSIGINNSLARLK 430 (1054)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666555444
No 246
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=33.60 E-value=34 Score=28.48 Aligned_cols=32 Identities=22% Similarity=0.093 Sum_probs=26.5
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARA 477 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~ 477 (563)
-.+++.++++.++++|.+++.+|+........
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSPLAK 90 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCcHHH
Confidence 46789999999999999999999977654333
No 247
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=33.50 E-value=23 Score=27.41 Aligned_cols=19 Identities=37% Similarity=0.732 Sum_probs=14.2
Q ss_pred CCcccCcEEEe-CCCCeeec
Q 044020 40 YDLVVGDIVHL-SIGDQVPA 58 (563)
Q Consensus 40 ~~L~~GDiI~v-~~G~~iPa 58 (563)
.+|.+||.|.| +.||+||-
T Consensus 48 ~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 48 LDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp TT-BBT-EEEEEEETTTEEE
T ss_pred cCCCCCCEEEEEECCCccce
Confidence 68999998766 68999996
No 248
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=33.20 E-value=63 Score=30.65 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=34.0
Q ss_pred hHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 450 VKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 450 ~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
..+.|.+|++.|+.|+=++-|...+-....++||+..
T Consensus 198 l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi~~ 234 (236)
T PF12017_consen 198 LKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGISE 234 (236)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCCCC
Confidence 4678999999999999999999999999999999974
No 249
>PRK04980 hypothetical protein; Provisional
Probab=33.01 E-value=1.2e+02 Score=24.62 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=33.1
Q ss_pred hccCeeEEEECCEEEEeecCCcccCcEEEeC--CCCeeeceEEEEeeCceEEE
Q 044020 21 KKKIFIQVTRDGQRQKVCTYDLVVGDIVHLS--IGDQVPAYGIFISGHSLLID 71 (563)
Q Consensus 21 ~~~~~~~V~r~g~~~~i~~~~L~~GDiI~v~--~G~~iPaD~~ll~g~~l~Vd 71 (563)
+...++.-+||+. .+..+|||++.|. .+.+.-|+..+++-....+|
T Consensus 16 LsGkKTiTiRd~s-----e~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i~f~ 63 (102)
T PRK04980 16 LAGRKTITIRDES-----ESHFKPGDVLRVGTFEDDRYFCTIEVLSVSPVTFD 63 (102)
T ss_pred HcCCceEEeeCCc-----ccCCCCCCEEEEEECCCCcEEEEEEEEEEEEEehh
Confidence 3444555567752 3679999999997 88899999999987643333
No 250
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=32.50 E-value=41 Score=29.75 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.0
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcC
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTG 469 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TG 469 (563)
+.+++.++|+++++.|++++|+|-
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTN 53 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTN 53 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE
T ss_pred cchhHHHHHHHHHhcCCeEEEEeC
Confidence 446799999999999999999994
No 251
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=31.83 E-value=4e+02 Score=24.29 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=23.5
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcC--CCHHHHHHHHH
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTG--DNINTARAIAK 480 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TG--d~~~~a~~~a~ 480 (563)
.+...++..+.++.+++.|+++.+.-. ...+..+.++.
T Consensus 86 h~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~ 125 (210)
T TIGR01163 86 HPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLP 125 (210)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHh
Confidence 344456777888889989988666532 23444444443
No 252
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.78 E-value=3.1e+02 Score=26.48 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHhcCCEEEEEcCCcc---CHHHHhhCCceEeec
Q 044020 517 PSDKHTLVTQLRNTFGEVVAVTGDGTN---DASALHEADIGLAMG 558 (563)
Q Consensus 517 p~~K~~~v~~l~~~~g~~v~~iGDg~N---D~~~l~~a~vgiamg 558 (563)
|..-.+.++.+++. ...-.++|-|.+ |+..+...-=|+.+|
T Consensus 185 ~~~~~~~i~~vk~~-~~~pv~vGfGI~~~e~v~~~~~~ADGviVG 228 (258)
T PRK13111 185 AADLAELVARLKAH-TDLPVAVGFGISTPEQAAAIAAVADGVIVG 228 (258)
T ss_pred CccHHHHHHHHHhc-CCCcEEEEcccCCHHHHHHHHHhCCEEEEc
Confidence 34455688888876 455556799985 455544433467777
No 253
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=31.69 E-value=2.1e+02 Score=25.19 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=30.3
Q ss_pred hHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 450 VKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 450 ~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
..+.=++|++.|+..++..|+.......+++++++..
T Consensus 55 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 91 (165)
T PF00875_consen 55 LADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATA 91 (165)
T ss_dssp HHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESE
T ss_pred HHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCe
Confidence 3444456788899999999999999999999999876
No 254
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=31.18 E-value=3.5e+02 Score=24.60 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=24.6
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCC--CHHHHHHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGD--NINTARAIAKE 481 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd--~~~~a~~~a~~ 481 (563)
..+...+.++.+++.|+.+.+..+. ..+.++.++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 127 (211)
T cd00429 90 ATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDE 127 (211)
T ss_pred chhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhh
Confidence 3366778899999999998887753 23445555443
No 255
>PRK13670 hypothetical protein; Provisional
Probab=31.04 E-value=3.2e+02 Score=28.23 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=65.9
Q ss_pred ceEEEEecccCCCCcchHHHHHHHHh---CCCeEEEEcCC----------CHHHHHHHHHHcCCCCCCCceeechhhhcC
Q 044020 434 YTLIAVVGIKDPVRPGVKEAVQTCLE---AGITVRMVTGD----------NINTARAIAKECGILTSDGEAVEGPEFRNM 500 (563)
Q Consensus 434 ~~~lG~i~~~d~~~~~~~~~I~~l~~---~gi~v~i~TGd----------~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~ 500 (563)
|..+|+|+=-|++..+=+..|+++++ +|..+++++|. +...=..+|.++|++- ++.-
T Consensus 1 Mk~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg~p~i~~~~~R~~~a~~~GvD~----viel------ 70 (388)
T PRK13670 1 MKVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMALENGVDL----VVEL------ 70 (388)
T ss_pred CceeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCCCCCCCCHHHHHHHHHHcCCCE----EEEe------
Confidence 35689999999999998888877764 47888888876 2333456666777652 1110
Q ss_pred CCCCCCcceeEEEecChhhHHH-HHHHHHHhcCCEEEEEcCCccCHHHHhh
Q 044020 501 SPADIIPKLQVMARSLPSDKHT-LVTQLRNTFGEVVAVTGDGTNDASALHE 550 (563)
Q Consensus 501 ~~~~~~~~~~v~~~~~p~~K~~-~v~~l~~~~g~~v~~iGDg~ND~~~l~~ 550 (563)
+. .|+..+|+.=.. .|+.| ..+|-..+++|....|+..|+.
T Consensus 71 -------pf-~~a~~sae~F~~~aV~iL-~~l~v~~lv~G~e~g~~~~L~~ 112 (388)
T PRK13670 71 -------PF-LYSVQSADFFAEGAVSIL-DALGVDSLVFGSESGDIEDFQK 112 (388)
T ss_pred -------CC-chHhCCHHHHHHhHHHHH-HHcCCCEEEEcCCCCCHHHHHH
Confidence 11 266667776543 45566 4457778999999889877765
No 256
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=29.74 E-value=93 Score=24.25 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=37.7
Q ss_pred EEecccC---CCCcchHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCCC
Q 044020 438 AVVGIKD---PVRPGVKEAVQTCLEAGITVRMV-TGDNINTARAIAKECGIL 485 (563)
Q Consensus 438 G~i~~~d---~~~~~~~~~I~~l~~~gi~v~i~-TGd~~~~a~~~a~~lgi~ 485 (563)
.++.+.+ ...+-+.+..+.|+++|+++.+- ++++...-...|...|+.
T Consensus 3 ~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p 54 (94)
T PF03129_consen 3 VIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP 54 (94)
T ss_dssp EEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe
Confidence 4556666 66777889999999999998888 556677778888888874
No 257
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=29.68 E-value=6.8e+02 Score=29.15 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=25.8
Q ss_pred CCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCc
Q 044020 31 DGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHS 67 (563)
Q Consensus 31 ~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~ 67 (563)
-|-...+...|.+|-|.+.++..+ .-+|=-.+-|.+
T Consensus 137 ~GDiv~l~~Gd~IPaDg~ii~g~~-l~VDES~LTGES 172 (884)
T TIGR01522 137 PGDLVCLSVGDRVPADLRIVEAVD-LSIDESNLTGET 172 (884)
T ss_pred cCCEEEecCCCEEeeeEEEEEcCc-eEEEcccccCCC
Confidence 466788889999999999998543 335555555555
No 258
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.50 E-value=2.9e+02 Score=23.65 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=39.6
Q ss_pred CCceEEEEecccCCCCcchHHHHHHHHhCCC--eEEEEcCCC---HH---HHHHHHHHcCCCC
Q 044020 432 SGYTLIAVVGIKDPVRPGVKEAVQTCLEAGI--TVRMVTGDN---IN---TARAIAKECGILT 486 (563)
Q Consensus 432 ~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi--~v~i~TGd~---~~---~a~~~a~~lgi~~ 486 (563)
.+-.++|+=++.-.-.+..++.++.|+++|. .++++=|-. .. .....++++|+..
T Consensus 51 ~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~ 113 (134)
T TIGR01501 51 TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDR 113 (134)
T ss_pred cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCE
Confidence 3456788877777777789999999999987 356677742 11 2245689999875
No 259
>COG4996 Predicted phosphatase [General function prediction only]
Probab=29.07 E-value=97 Score=26.27 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=40.0
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCC
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTS 487 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~ 487 (563)
.++++++++++.+++.|.-+..+|=..+..|....+.+++.+.
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~y 83 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQY 83 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhh
Confidence 4889999999999999999999999999999999999999863
No 260
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=28.63 E-value=32 Score=30.12 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=22.6
Q ss_pred hhhcCCeeeeecccccccccCceEEE
Q 044020 230 CETMGSASCICTDKTRMLTTNHMVVD 255 (563)
Q Consensus 230 le~l~~v~~i~~DKTGTLT~~~~~v~ 255 (563)
.+++..+..+++|--||||.|.+.+.
T Consensus 2 ~~ra~~IkLli~DVDGvLTDG~ly~~ 27 (170)
T COG1778 2 IARAKNIKLLILDVDGVLTDGKLYYD 27 (170)
T ss_pred hhhhhhceEEEEeccceeecCeEEEc
Confidence 46788899999999999999988664
No 261
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.52 E-value=2.9e+02 Score=23.65 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=43.1
Q ss_pred CCceEEEEecccCCCCcchHHHHHHHHhCCC-e-EEEEcCCC------HHHHHHHHHHcCCCC
Q 044020 432 SGYTLIAVVGIKDPVRPGVKEAVQTCLEAGI-T-VRMVTGDN------INTARAIAKECGILT 486 (563)
Q Consensus 432 ~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi-~-v~i~TGd~------~~~a~~~a~~lgi~~ 486 (563)
.+-.++|+-.+...-.+..++.+++|+++|. . .+++-|.. +......++++|++.
T Consensus 53 ~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~ 115 (137)
T PRK02261 53 TDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDR 115 (137)
T ss_pred cCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCE
Confidence 4457888888888899999999999999965 2 45666654 566778999999875
No 262
>PLN02645 phosphoglycolate phosphatase
Probab=28.52 E-value=49 Score=32.97 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHhcCCEEEEEcCCc-cCHHHHhhCCc-eEee
Q 044020 517 PSDKHTLVTQLRNTFGEVVAVTGDGT-NDASALHEADI-GLAM 557 (563)
Q Consensus 517 p~~K~~~v~~l~~~~g~~v~~iGDg~-ND~~~l~~a~v-giam 557 (563)
|.--..+++.+... .++++||||.. +|+.+-+.||+ +|.+
T Consensus 233 p~~~~~a~~~~~~~-~~~~~~VGD~~~~Di~~A~~aG~~~ilV 274 (311)
T PLN02645 233 TFMMDYLANKFGIE-KSQICMVGDRLDTDILFGQNGGCKTLLV 274 (311)
T ss_pred HHHHHHHHHHcCCC-cccEEEEcCCcHHHHHHHHHcCCCEEEE
Confidence 33333444444433 57899999997 99999999997 4444
No 263
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.06 E-value=1.2e+02 Score=22.94 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=35.6
Q ss_pred EecccCCCCcchHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCCC
Q 044020 439 VVGIKDPVRPGVKEAVQTCLEAGITVRMV-TGDNINTARAIAKECGIL 485 (563)
Q Consensus 439 ~i~~~d~~~~~~~~~I~~l~~~gi~v~i~-TGd~~~~a~~~a~~lgi~ 485 (563)
++.+.+..++.+.+..++|+++|+++.+. .+++.......|+..|+.
T Consensus 6 i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~ 53 (91)
T cd00859 6 VVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGAR 53 (91)
T ss_pred EEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCC
Confidence 34455666677888899999999998874 445777788888888763
No 264
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=27.67 E-value=4.9e+02 Score=23.97 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=26.0
Q ss_pred CCCcchHHHHHHHHhCCCeEEEEcCC--CHHHHHHHHHHc
Q 044020 445 PVRPGVKEAVQTCLEAGITVRMVTGD--NINTARAIAKEC 482 (563)
Q Consensus 445 ~~~~~~~~~I~~l~~~gi~v~i~TGd--~~~~a~~~a~~l 482 (563)
...+...+.++.+++.|+++.+..+. ..+.++.+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~ 132 (220)
T PRK05581 93 EASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLL 132 (220)
T ss_pred ccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhC
Confidence 33466778899999999998888863 344455554433
No 265
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=27.56 E-value=1.1e+02 Score=28.72 Aligned_cols=91 Identities=19% Similarity=0.317 Sum_probs=56.6
Q ss_pred cCCCCcchH-HHHHHHHhCCCeEEEEcCCCHH-----HHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecC
Q 044020 443 KDPVRPGVK-EAVQTCLEAGITVRMVTGDNIN-----TARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSL 516 (563)
Q Consensus 443 ~d~~~~~~~-~~I~~l~~~gi~v~i~TGd~~~-----~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 516 (563)
.-.+.|+.. +..+.++++|++.+|+.+..+. ..+..+++.|+.-. ++ ..||.+.
T Consensus 57 ~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~------------------~P--~~~CsL~ 116 (217)
T PF02593_consen 57 AYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVE------------------FP--KPFCSLE 116 (217)
T ss_pred EeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceee------------------cC--ccccccC
Confidence 334677654 7777888899999999888777 78888888885420 00 1667666
Q ss_pred hhhHHHHHHHHHHhcCC---EEEEEcCCccCHHHHhhCCce
Q 044020 517 PSDKHTLVTQLRNTFGE---VVAVTGDGTNDASALHEADIG 554 (563)
Q Consensus 517 p~~K~~~v~~l~~~~g~---~v~~iGDg~ND~~~l~~a~vg 554 (563)
+ .+...++.+-+.||. +|-+=+|..-|+.-+|.|-.|
T Consensus 117 ~-~~~p~i~~F~~~fGkP~~ei~v~~~~I~~V~VlR~aPCG 156 (217)
T PF02593_consen 117 E-NGNPQIDEFAEYFGKPKVEIEVENGKIKDVKVLRSAPCG 156 (217)
T ss_pred C-CCChhHHHHHHHhCCceEEEEecCCcEEEEEEEecCCCc
Confidence 5 344444445444563 333334455566666666555
No 266
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.41 E-value=3.3e+02 Score=25.88 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=52.5
Q ss_pred CcchHHHHHHHHhCCCeEEE-EcCC-CHHHHHHHHH-HcCCCCCCCceeechhhhcCCCCCCCcceeEEEec--ChhhHH
Q 044020 447 RPGVKEAVQTCLEAGITVRM-VTGD-NINTARAIAK-ECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARS--LPSDKH 521 (563)
Q Consensus 447 ~~~~~~~I~~l~~~gi~v~i-~TGd-~~~~a~~~a~-~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~--~p~~K~ 521 (563)
-++..+.++.+++.|++.++ ++-. +....+.+++ ..|+.- +++-. .++... .+..-.
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy----~~s~~--------------g~tG~~~~~~~~~~ 176 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIY----YVSRT--------------GVTGARTELPDDLK 176 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEE----EEeCC--------------CCCCCccCCChhHH
Confidence 35777888999999987554 4443 3455666666 455421 11000 011111 123344
Q ss_pred HHHHHHHHhcCCEEEEEcCCcc---CHHHHhhCCceEeec
Q 044020 522 TLVTQLRNTFGEVVAVTGDGTN---DASALHEADIGLAMG 558 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg~N---D~~~l~~a~vgiamg 558 (563)
+.++.+++. ...-+++|=|.| |+..+..+-=|+.+|
T Consensus 177 ~~i~~lr~~-~~~pI~vggGI~~~e~~~~~~~~ADgvVvG 215 (242)
T cd04724 177 ELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKYADGVIVG 215 (242)
T ss_pred HHHHHHHhc-CCCcEEEEccCCCHHHHHHHHccCCEEEEC
Confidence 666667665 455666698998 455665543377777
No 267
>PRK06033 hypothetical protein; Validated
Probab=27.19 E-value=29 Score=26.93 Aligned_cols=25 Identities=8% Similarity=0.247 Sum_probs=19.4
Q ss_pred EeecCCcccCcEEEeCCCCeeeceE
Q 044020 36 KVCTYDLVVGDIVHLSIGDQVPAYG 60 (563)
Q Consensus 36 ~i~~~~L~~GDiI~v~~G~~iPaD~ 60 (563)
.....++...|++.+++||+||.|-
T Consensus 14 ~Lg~~~i~l~dlL~L~~GDVI~L~~ 38 (83)
T PRK06033 14 VLGRSSMPIHQVLRMGRGAVIPLDA 38 (83)
T ss_pred EEecccccHHHHhCCCCCCEEEeCC
Confidence 4455778888888889898888754
No 268
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.97 E-value=63 Score=26.91 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=29.3
Q ss_pred cCCCCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q 044020 443 KDPVRPGVKEAVQTCLEAGITVRMVTGDNINTARAIA 479 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a 479 (563)
...-.++..+.++.+++.|.+++.+|+.........+
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 4456678999999999999999999987765554444
No 269
>PRK08433 flagellar motor switch protein; Validated
Probab=26.91 E-value=29 Score=28.56 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=21.8
Q ss_pred EEEeecCCcccCcEEEeCCCCeeeceE
Q 044020 34 RQKVCTYDLVVGDIVHLSIGDQVPAYG 60 (563)
Q Consensus 34 ~~~i~~~~L~~GDiI~v~~G~~iPaD~ 60 (563)
...+...++.+.|++.+++||+||.|-
T Consensus 37 ~v~LG~t~itl~dlL~Lq~GDVI~Ld~ 63 (111)
T PRK08433 37 SAELGTTQISLLEILKFEKGSVIDLEK 63 (111)
T ss_pred EEEEecccccHHHHhCCCCCCEEEeCC
Confidence 345666788899999999999999865
No 270
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=25.98 E-value=42 Score=27.99 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.4
Q ss_pred CCcccCcEEEeCCCCe
Q 044020 40 YDLVVGDIVHLSIGDQ 55 (563)
Q Consensus 40 ~~L~~GDiI~v~~G~~ 55 (563)
..++|||||++..|-.
T Consensus 60 ~~~~PGDIirLt~Gy~ 75 (134)
T KOG3416|consen 60 CLIQPGDIIRLTGGYA 75 (134)
T ss_pred cccCCccEEEecccch
Confidence 4689999999998864
No 271
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.81 E-value=56 Score=27.40 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=24.9
Q ss_pred cchHHHHHHHHhCCCeEEEEcCCCHHHHHH
Q 044020 448 PGVKEAVQTCLEAGITVRMVTGDNINTARA 477 (563)
Q Consensus 448 ~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~ 477 (563)
++..++++.+++.|++++.+|+........
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~ 103 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSPLAK 103 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChhHH
Confidence 678899999999999999999986644333
No 272
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.42 E-value=2e+02 Score=28.18 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=39.8
Q ss_pred CceEEEEecccCCCCc---chHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCCC
Q 044020 433 GYTLIAVVGIKDPVRP---GVKEAVQTCLEAGITVRMV-TGDNINTARAIAKECGIL 485 (563)
Q Consensus 433 ~~~~lG~i~~~d~~~~---~~~~~I~~l~~~gi~v~i~-TGd~~~~a~~~a~~lgi~ 485 (563)
++..++++.....-.+ +..+.++.+++.++++++. +.-+...+..++++.|..
T Consensus 197 gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~ 253 (286)
T cd01019 197 GLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAK 253 (286)
T ss_pred CCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCce
Confidence 4567777776543333 4557888899999998777 556788999999999863
No 273
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=25.38 E-value=5.2e+02 Score=23.54 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=23.3
Q ss_pred chHHHHHHHHhCCCeEEEE--cCCCHHHHHHHHHHcCCC
Q 044020 449 GVKEAVQTCLEAGITVRMV--TGDNINTARAIAKECGIL 485 (563)
Q Consensus 449 ~~~~~I~~l~~~gi~v~i~--TGd~~~~a~~~a~~lgi~ 485 (563)
...+.++.+++.|+++.+. +..........+.++|.+
T Consensus 90 ~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d 128 (206)
T TIGR03128 90 TIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGAD 128 (206)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCC
Confidence 4578899999999998864 433333333334555654
No 274
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=25.24 E-value=55 Score=29.38 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=28.2
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAK 480 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~ 480 (563)
-.+++.++++.+++.|++++.+|+.+.......|.
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad 118 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPESTLGKLAD 118 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCC
Confidence 56788999999999999999999987655544443
No 275
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=25.13 E-value=1.1e+02 Score=29.03 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=33.2
Q ss_pred hHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 450 VKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 450 ~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
+.+.+.++-.+||.+++.-+-+-..|..+|+++||.
T Consensus 181 s~emv~Ka~~aGIpvlvS~sapT~lavelA~~~giT 216 (237)
T TIGR00129 181 SSEMVQKAARCGVPIIASKSAPTDLAIEVAEESNIT 216 (237)
T ss_pred cHHHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCE
Confidence 457789999999999999999999999999999985
No 276
>PRK06788 flagellar motor switch protein; Validated
Probab=24.62 E-value=25 Score=29.33 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=45.6
Q ss_pred EEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCCCCcccccCCCCeEEecceeec-CcEEEEEEEEccc
Q 044020 34 RQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQSEPRYMYEENPFLLAGTKVQG-GSGKMLVTTVGMR 112 (563)
Q Consensus 34 ~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGes~p~~k~~~~~~i~~Gt~v~~-g~~~~~V~~tg~~ 112 (563)
...+...++.++|++.++.||+||.|-.+-+ |+...-++..+|.|..... +..-+.++.....
T Consensus 39 ~aeLG~t~ltl~DlL~L~vGDVI~Ldk~~~d----------------pv~v~Vng~~~f~G~~Gv~~~~~AVrItei~~~ 102 (119)
T PRK06788 39 GVKLGKASITLGDVKQLKVGDVLEVEKNLGH----------------KVDVYLSNMKVGIGEAIVMDEKFGIIISEIEAD 102 (119)
T ss_pred EEEEecceecHHHHhCCCCCCEEEeCCcCCC----------------CEEEEECCEEEEEEEEEEECCEEEEEEEEecCh
Confidence 3456678899999999999999998644322 2222223444677766554 5566677777766
Q ss_pred chhHHHHH
Q 044020 113 TEWGKLME 120 (563)
Q Consensus 113 t~~~~i~~ 120 (563)
-....+++
T Consensus 103 ~~~~~~~~ 110 (119)
T PRK06788 103 KKQAALMK 110 (119)
T ss_pred HHHHHHHH
Confidence 55444443
No 277
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=24.44 E-value=8.3e+02 Score=28.54 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=26.1
Q ss_pred ECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEE
Q 044020 30 RDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLID 71 (563)
Q Consensus 30 r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vd 71 (563)
.-|-...+...|.+|-|.+.++. +-+-+|=-.+-|.+.-|+
T Consensus 184 vpGDiV~l~~Gd~IPaDg~li~g-~~l~VDES~LTGES~PV~ 224 (902)
T PRK10517 184 VPGDIIKLAAGDMIPADLRILQA-RDLFVAQASLTGESLPVE 224 (902)
T ss_pred CCCCEEEECCCCEEeeeEEEEEc-CceEEEecCcCCCCCcee
Confidence 34667788888888888887763 334455555555553333
No 278
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.21 E-value=1.2e+02 Score=29.69 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=29.7
Q ss_pred cCCCCcchHHHHHHHHhCCCe---EEEEcCCCHH------HHHHHHHHcCCCC
Q 044020 443 KDPVRPGVKEAVQTCLEAGIT---VRMVTGDNIN------TARAIAKECGILT 486 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~---v~i~TGd~~~------~a~~~a~~lgi~~ 486 (563)
.++++++.++.++.+++.|++ .++..|+++. .....|+++|+..
T Consensus 11 A~~i~~~ik~~i~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~ 63 (284)
T PRK14170 11 AKEIQEKVTREVAELVKEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKS 63 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 345677788888888877765 4566677654 3455677788754
No 279
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.02 E-value=2.1e+02 Score=28.01 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=40.6
Q ss_pred CCceEEEEecccCCCCc---chHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCCC
Q 044020 432 SGYTLIAVVGIKDPVRP---GVKEAVQTCLEAGITVRMV-TGDNINTARAIAKECGIL 485 (563)
Q Consensus 432 ~~~~~lG~i~~~d~~~~---~~~~~I~~l~~~gi~v~i~-TGd~~~~a~~~a~~lgi~ 485 (563)
-++..+|++.+.....| +..+.++.+++.|+++++. .+-+...+..+|++.|..
T Consensus 194 yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~gv~ 251 (287)
T cd01137 194 YGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKETGAK 251 (287)
T ss_pred cCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHhCCc
Confidence 45677888777444444 4577788889999997766 556778899999999975
No 280
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=23.81 E-value=4.8e+02 Score=25.82 Aligned_cols=86 Identities=23% Similarity=0.378 Sum_probs=47.0
Q ss_pred chHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHH
Q 044020 449 GVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLR 528 (563)
Q Consensus 449 ~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~ 528 (563)
...++-+-|-+. +..+++=+........+|+..+++ +++|- --...|-|-..=+-.++
T Consensus 88 si~DTArVLsr~-~D~I~~R~~~~~~ve~lA~~s~VP-----ViNgL----------------tD~~HP~Q~LADl~Ti~ 145 (310)
T COG0078 88 SIKDTARVLSRM-VDAIMIRGFSHETLEELAKYSGVP-----VINGL----------------TDEFHPCQALADLMTIK 145 (310)
T ss_pred cHHHHHHHHHhh-hheEEEecccHHHHHHHHHhCCCc-----eEccc----------------ccccCcHHHHHHHHHHH
Confidence 333333333333 666777777788888888877765 22221 11123555444444445
Q ss_pred Hhc----CCEEEEEcCCccCHH--HHhhCCceEe
Q 044020 529 NTF----GEVVAVTGDGTNDAS--ALHEADIGLA 556 (563)
Q Consensus 529 ~~~----g~~v~~iGDg~ND~~--~l~~a~vgia 556 (563)
+++ |..++++|||.|=+. |+-.|-+|+-
T Consensus 146 E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~d 179 (310)
T COG0078 146 EHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMD 179 (310)
T ss_pred HhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCe
Confidence 544 479999999955322 4444444443
No 281
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=23.68 E-value=56 Score=29.30 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=25.0
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINT 474 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~ 474 (563)
-.+++.++++.++++|.+++.+|+.+...
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 45789999999999999999999986544
No 282
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=23.65 E-value=1.3e+02 Score=29.20 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=33.3
Q ss_pred hHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 450 VKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 450 ~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
..+.++++-.+||.+++.-+-+-..|..+|++.||.
T Consensus 210 s~emv~Ka~~aGipvivS~saPT~lAVelA~~~giT 245 (263)
T PRK00724 210 SSEMVQKAAMAGIPILVAVSAPTSLAVELAEELGLT 245 (263)
T ss_pred hHHHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCE
Confidence 457799999999999999999999999999999985
No 283
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.50 E-value=1.8e+02 Score=25.62 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 451 KEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 451 ~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
++...++++.|..|+=+|-|+..+-+.++++.|+.
T Consensus 54 rd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 54 RDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 45566788888888888888888888888888875
No 284
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=23.41 E-value=52 Score=23.07 Aligned_cols=12 Identities=42% Similarity=0.817 Sum_probs=9.9
Q ss_pred ccCcEEEeCCCC
Q 044020 43 VVGDIVHLSIGD 54 (563)
Q Consensus 43 ~~GDiI~v~~G~ 54 (563)
.+||+|.++.|-
T Consensus 2 ~~GDvV~LKSGG 13 (53)
T PF09926_consen 2 KIGDVVQLKSGG 13 (53)
T ss_pred CCCCEEEEccCC
Confidence 578999998875
No 285
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=23.24 E-value=3.8e+02 Score=25.16 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=14.0
Q ss_pred cchHHHHHHHHhCCCeEEE
Q 044020 448 PGVKEAVQTCLEAGITVRM 466 (563)
Q Consensus 448 ~~~~~~I~~l~~~gi~v~i 466 (563)
....+..+.+++.|+++++
T Consensus 109 ~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 109 EELARVAAEAHKYGLPLIA 127 (235)
T ss_pred HHHHHHHHHHHHcCCCEEE
Confidence 3566666677788999877
No 286
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=23.22 E-value=4.5e+02 Score=25.99 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCEEEEEcCC
Q 044020 522 TLVTQLRNTFGEVVAVTGDG 541 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg 541 (563)
..++.+.+. |+.+..+||.
T Consensus 104 ~~v~~~~~~-Gy~vvi~G~~ 122 (298)
T PRK01045 104 KEVARMSRE-GYEIILIGHK 122 (298)
T ss_pred HHHHHHHhC-CCEEEEEeCC
Confidence 567777777 9999999984
No 287
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=23.20 E-value=61 Score=27.55 Aligned_cols=28 Identities=32% Similarity=0.196 Sum_probs=17.3
Q ss_pred EEeecCCcccCcEEEeCCCCeeeceEEE
Q 044020 35 QKVCTYDLVVGDIVHLSIGDQVPAYGIF 62 (563)
Q Consensus 35 ~~i~~~~L~~GDiI~v~~G~~iPaD~~l 62 (563)
..+++++|++||.+.-..|....+..+-
T Consensus 70 gWv~A~~L~~GD~L~~~~G~~~~v~~i~ 97 (130)
T PF07591_consen 70 GWVEAEDLKVGDRLLTADGSWVTVTSIR 97 (130)
T ss_dssp --EEGGG--TTSEEEEE-SSEEEEE---
T ss_pred hhhhHhhCCCCCEEEcCCCCEEEEEEEE
Confidence 4688899999999998888877665543
No 288
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=23.09 E-value=4.9e+02 Score=25.47 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCEEEEEcCC
Q 044020 522 TLVTQLRNTFGEVVAVTGDG 541 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg 541 (563)
..++.+.+. |+.+..+||.
T Consensus 104 ~~v~~~~~~-Gy~iiiiG~~ 122 (280)
T TIGR00216 104 NAVKKYAKE-GYHVILIGKK 122 (280)
T ss_pred HHHHHHHhC-CCEEEEEeCC
Confidence 567777777 9999999984
No 289
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=23.06 E-value=1.1e+02 Score=26.63 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=32.0
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGI 484 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi 484 (563)
+||++.+.++.+.+. +++++.|.....-|..+.+.+.-
T Consensus 37 ~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp 74 (159)
T PF03031_consen 37 LRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDP 74 (159)
T ss_dssp E-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTT
T ss_pred eCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhh
Confidence 599999999999665 99999999999999999999985
No 290
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=23.05 E-value=1.1e+02 Score=22.31 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=11.4
Q ss_pred cccCcEEEeCCCCee
Q 044020 42 LVVGDIVHLSIGDQV 56 (563)
Q Consensus 42 L~~GDiI~v~~G~~i 56 (563)
|.+||-+.+..|+++
T Consensus 40 L~~G~~l~l~~g~~v 54 (63)
T PF11142_consen 40 LQAGDSLRLRRGGRV 54 (63)
T ss_pred ECCCCEEEeCCCCEE
Confidence 677888888877764
No 291
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=22.94 E-value=1.3e+02 Score=30.69 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=14.9
Q ss_pred CeeEEEECCEEEEeecCCc
Q 044020 24 IFIQVTRDGQRQKVCTYDL 42 (563)
Q Consensus 24 ~~~~V~r~g~~~~i~~~~L 42 (563)
..+++.|+|+...++..+|
T Consensus 198 ~~V~l~R~~~~~~i~l~dL 216 (355)
T PRK15175 198 MEVHVTRQQHYFTARLSDI 216 (355)
T ss_pred cEEEEEECCEEEEEEHHHH
Confidence 4689999999888876654
No 292
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=22.90 E-value=91 Score=20.83 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=19.9
Q ss_pred HHHhccCeeEEEECCEEEEeecCCcccCcEE
Q 044020 18 DREKKKIFIQVTRDGQRQKVCTYDLVVGDIV 48 (563)
Q Consensus 18 ~~~~~~~~~~V~r~g~~~~i~~~~L~~GDiI 48 (563)
.+.+....++ =||+...-+...+.+||+|
T Consensus 20 ~~~I~~g~V~--VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 20 RRLIKQGRVK--VNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp HHHHHTTTEE--ETTEEESSTTSBESTTEEE
T ss_pred HHhcCCCEEE--ECCEEEcCCCCCCCCcCCC
Confidence 3334444444 4888777788899999986
No 293
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=22.79 E-value=2.2e+02 Score=28.51 Aligned_cols=92 Identities=26% Similarity=0.296 Sum_probs=59.5
Q ss_pred HHHHHHHHhCCCe---EEEEcCCCHH---HHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHH
Q 044020 451 KEAVQTCLEAGIT---VRMVTGDNIN---TARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLV 524 (563)
Q Consensus 451 ~~~I~~l~~~gi~---v~i~TGd~~~---~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v 524 (563)
.-.|-.|-..||= =+=+|+|+.+ .++.+.+.||+......+++-+. ..|. .-+-..++
T Consensus 213 aigig~LL~~GIGDTIRVSLT~dP~~EV~va~~IL~slglr~~g~~iiSCPt---------------CGR~-~~dl~~~~ 276 (346)
T TIGR00612 213 SAGIGILLARGIGDTIRVSLTDDPTHEVPVAFEILQSLGLRARGVEIVACPS---------------CGRT-GFDVEKVV 276 (346)
T ss_pred HHHHHHHHhhCCCCeEEEECCCCcHHHHHHHHHHHHHcCCCcCCCeEEECCC---------------CCCc-CCCHHHHH
Confidence 3457778888872 2346888865 56889999999865444433321 1121 22333333
Q ss_pred HHHHHh-----cCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 525 TQLRNT-----FGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 525 ~~l~~~-----~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
+.+.+. .+-.|+..|=-.|-..--+.||+|||-|
T Consensus 277 ~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIagg 315 (346)
T TIGR00612 277 RRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGG 315 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecC
Confidence 333322 1357999999999999999999999976
No 294
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=22.52 E-value=1.8e+02 Score=24.84 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 044020 451 KEAVQTCLEAGITVRMVTGDNINTARAIAKECGI 484 (563)
Q Consensus 451 ~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi 484 (563)
.+..+++++.|++++.++-|+...+..++++.++
T Consensus 52 ~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 52 RDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred HHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence 3444455555666666666666666666666554
No 295
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=22.50 E-value=7.2e+02 Score=25.95 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=47.1
Q ss_pred hHHHHHHHHhCCCeEEE--EcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEe-cChhhHHHHHHH
Q 044020 450 VKEAVQTCLEAGITVRM--VTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMAR-SLPSDKHTLVTQ 526 (563)
Q Consensus 450 ~~~~I~~l~~~gi~v~i--~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~-~~p~~K~~~v~~ 526 (563)
..++++.+++.|.++.+ +|-.+.......+.++|.+. +..+. .|.. ..+..-.+.++.
T Consensus 96 ~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~----I~~~p---------------g~~~~~~~~~~~~~l~~ 156 (430)
T PRK07028 96 IEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDY----INVHV---------------GIDQQMLGKDPLELLKE 156 (430)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCE----EEEEe---------------ccchhhcCCChHHHHHH
Confidence 46788899999999876 46444323223345566542 10000 1100 011222356666
Q ss_pred HHHhcCCEEEEEcCCcc--CHHHHhhCCc-eEeec
Q 044020 527 LRNTFGEVVAVTGDGTN--DASALHEADI-GLAMG 558 (563)
Q Consensus 527 l~~~~g~~v~~iGDg~N--D~~~l~~a~v-giamg 558 (563)
+.+.++-.+++.| |.+ .+..+-.+|+ |+++|
T Consensus 157 l~~~~~iPI~a~G-GI~~~n~~~~l~aGAdgv~vG 190 (430)
T PRK07028 157 VSEEVSIPIAVAG-GLDAETAAKAVAAGADIVIVG 190 (430)
T ss_pred HHhhCCCcEEEEC-CCCHHHHHHHHHcCCCEEEEC
Confidence 6655455566666 553 4555555555 78877
No 296
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.47 E-value=1.3e+02 Score=29.68 Aligned_cols=45 Identities=29% Similarity=0.352 Sum_probs=27.9
Q ss_pred ccCCCCcchHHHHHHHHhCCCe---EEEEcCCCHHH------HHHHHHHcCCCC
Q 044020 442 IKDPVRPGVKEAVQTCLEAGIT---VRMVTGDNINT------ARAIAKECGILT 486 (563)
Q Consensus 442 ~~d~~~~~~~~~I~~l~~~gi~---v~i~TGd~~~~------a~~~a~~lgi~~ 486 (563)
+.++++++.++.++.+++.|++ .++.-|+++.+ -...|+++|+..
T Consensus 12 iA~~i~~~lk~~i~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~ 65 (301)
T PRK14194 12 AAARVLAQVREDVRTLKAAGIEPALAVILVGNDPASQVYVRNKILRAEEAGIRS 65 (301)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEE
Confidence 3455677777888888777765 34555655543 344666777653
No 297
>PRK13937 phosphoheptose isomerase; Provisional
Probab=22.28 E-value=67 Score=29.26 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=26.4
Q ss_pred CCcchHHHHHHHHhCCCeEEEEcCCCHHHHHH
Q 044020 446 VRPGVKEAVQTCLEAGITVRMVTGDNINTARA 477 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~gi~v~i~TGd~~~~a~~ 477 (563)
-.+++.++++.+++.|++++.+|+........
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~ 149 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGKMKE 149 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 56789999999999999999999976544433
No 298
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=22.24 E-value=1e+03 Score=27.77 Aligned_cols=159 Identities=11% Similarity=0.072 Sum_probs=77.4
Q ss_pred ECCEEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccC------------cCCCCc-----ccccCCCCeEE
Q 044020 30 RDGQRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSL------------SGQSEP-----RYMYEENPFLL 92 (563)
Q Consensus 30 r~g~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~l------------TGes~p-----~~k~~~~~~i~ 92 (563)
.-|-...+...|.+|-|.+.++..+ .-+|=-.|-|.+.-|+-... .++..+ -.... +..+.
T Consensus 173 v~GDiV~l~~Gd~IPaDg~li~g~~-l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfa-GT~V~ 250 (903)
T PRK15122 173 VPGDIVHLSAGDMIPADVRLIESRD-LFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFM-GTNVV 250 (903)
T ss_pred CCCCEEEECCCCEEeeeEEEEEcCc-eEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEe-CCEEE
Confidence 3567888999999999998887433 45565555565544444321 122111 01222 33466
Q ss_pred ecceeecCcEEEEEEEEcccchhHHHHHHhccCCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 044020 93 AGTKVQGGSGKMLVTTVGMRTEWGKLMETLNEGGE---DETPLQVKLNGVATIIGKIELFFSVLEFLVLIGRFLGEKVIH 169 (563)
Q Consensus 93 ~Gt~v~~g~~~~~V~~tg~~t~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 169 (563)
.|+...--...+.=+..|. +.++.+.-..... +-.++.+.+..++.++.++.++++.+...-+.
T Consensus 251 ~G~~~~~V~atG~~T~~gk---I~~~v~~~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~---------- 317 (903)
T PRK15122 251 SGTATAVVVATGSRTYFGS---LAKSIVGTRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFTKGDWL---------- 317 (903)
T ss_pred eeeEEEEEEEeccccHhhH---HHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHH----------
Confidence 6664331111111111111 0011100111010 01234556666666666655544433221111
Q ss_pred cccccccchhhHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 044020 170 NEFTDWSSADALTLIDYFAVVVTIIDVAVPEGLPLAVTLSLAFAM 214 (563)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~i~ili~~~P~~l~~~~~~~~~~~~ 214 (563)
..+...+..++.....+.|.++++++..+.....
T Consensus 318 -----------~~l~~aisl~V~~~Pe~Lp~~vt~~La~g~~~ma 351 (903)
T PRK15122 318 -----------EALLFALAVAVGLTPEMLPMIVSSNLAKGAIAMA 351 (903)
T ss_pred -----------HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 1233446667777788888888888887764444
No 299
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=22.22 E-value=1.4e+02 Score=30.77 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=21.1
Q ss_pred CeeEEEECCEEEEeecCC------------cccCcEEEeCC
Q 044020 24 IFIQVTRDGQRQKVCTYD------------LVVGDIVHLSI 52 (563)
Q Consensus 24 ~~~~V~r~g~~~~i~~~~------------L~~GDiI~v~~ 52 (563)
..+.+.|+|+...++..+ |++||+|.|..
T Consensus 211 ~~V~l~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~ 251 (379)
T PRK15078 211 RNVVLTHNGKEERISLQALMQNGDLSQNRLLYPGDILYVPR 251 (379)
T ss_pred ceEEEEECCeEEEEEHHHHHhcCCcccCceeCCCCEEEECC
Confidence 468899999988887543 56666666654
No 300
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.21 E-value=1.4e+02 Score=29.32 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=27.3
Q ss_pred CCCCcchHHHHHHHHhCCCe---EEEEcCCCHH------HHHHHHHHcCCCC
Q 044020 444 DPVRPGVKEAVQTCLEAGIT---VRMVTGDNIN------TARAIAKECGILT 486 (563)
Q Consensus 444 d~~~~~~~~~I~~l~~~gi~---v~i~TGd~~~------~a~~~a~~lgi~~ 486 (563)
.+++++.++.++.+++.|++ .++.-|+++. .-...|+++|+..
T Consensus 11 ~~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~ 62 (282)
T PRK14169 11 KKILADLKQTVAKLAQQDVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRS 62 (282)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEE
Confidence 44667777778888776664 3555666553 3355677777754
No 301
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.18 E-value=2e+02 Score=28.15 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhccCCCC----------------CCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhC
Q 044020 397 NITDVINGFASEALRTLCLAFKDLNDSS----------------NENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEA 460 (563)
Q Consensus 397 ~i~~~~~~~~~~G~r~i~~a~~~l~~~~----------------~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~ 460 (563)
+++..+.++.++||.++.+..+.=++-. .+...+... .-++++.-.....++..+.++.|++.
T Consensus 104 k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~~~-~kv~~vsQTT~~~~~~~~iv~~l~~~ 182 (281)
T PRK12360 104 KIQNIVEEYYNKGYSIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVENIPFL-DKACVVAQTTIIPELWEDILNVIKLK 182 (281)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCceeeEeccCcCCCeEEECCHHHHhhCccc-cCEEEEECCCCcHHHHHHHHHHHHHh
Q ss_pred CCeEEE------EcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCE
Q 044020 461 GITVRM------VTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEV 534 (563)
Q Consensus 461 gi~v~i------~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~ 534 (563)
.-.+.+ +|-+.+.++..+|+++.+.- |....+...-..+.+..++. +..
T Consensus 183 ~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~mi------------------------VVGg~~SsNT~rL~eia~~~-~~~ 237 (281)
T PRK12360 183 SKELVFFNTICSATKKRQESAKELSKEVDVMI------------------------VIGGKHSSNTQKLVKICEKN-CPN 237 (281)
T ss_pred CcccccCCCcchhhhhHHHHHHHHHHhCCEEE------------------------EecCCCCccHHHHHHHHHHH-CCC
Q ss_pred EEEEcCCcc-CHHHHh-hCCceEeecCCCCC
Q 044020 535 VAVTGDGTN-DASALH-EADIGLAMGIAGTE 563 (563)
Q Consensus 535 v~~iGDg~N-D~~~l~-~a~vgiamg~~~~~ 563 (563)
+..|.+..- |..+|+ ...|||.-| .+++
T Consensus 238 t~~Ie~~~el~~~~~~~~~~VGitaG-ASTP 267 (281)
T PRK12360 238 TFHIETADELDLEMLKDYKIIGITAG-ASTP 267 (281)
T ss_pred EEEECChHHCCHHHhCCCCEEEEEcc-CCCC
No 302
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=22.16 E-value=2.5e+02 Score=28.34 Aligned_cols=59 Identities=27% Similarity=0.343 Sum_probs=44.1
Q ss_pred EEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCCCCcceeEEEecChhhHHHHHHHHHHhcCCEEEEEcCCcc
Q 044020 464 VRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPADIIPKLQVMARSLPSDKHTLVTQLRNTFGEVVAVTGDGTN 543 (563)
Q Consensus 464 v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~p~~K~~~v~~l~~~~g~~v~~iGDg~N 543 (563)
|.--+|-+.......|+.+|+.. ..+....+|.+|.+-++. +|.+|...|+.+.
T Consensus 78 iaaSaGNHaQGvA~aa~~lGi~a----------------------~IvMP~~tp~~Kv~a~r~----~GaeVil~g~~~d 131 (347)
T COG1171 78 IAASAGNHAQGVAYAAKRLGIKA----------------------TIVMPETTPKIKVDATRG----YGAEVILHGDNFD 131 (347)
T ss_pred EEecCCcHHHHHHHHHHHhCCCE----------------------EEEecCCCcHHHHHHHHh----cCCEEEEECCCHH
Confidence 33444566778888899999975 124557889999988876 4778999999998
Q ss_pred CHHHH
Q 044020 544 DASAL 548 (563)
Q Consensus 544 D~~~l 548 (563)
|....
T Consensus 132 da~~~ 136 (347)
T COG1171 132 DAYAA 136 (347)
T ss_pred HHHHH
Confidence 87654
No 303
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=21.90 E-value=7.8e+02 Score=24.28 Aligned_cols=111 Identities=10% Similarity=-0.000 Sum_probs=66.9
Q ss_pred CCcchHHHHHHHHhCC-CeEEEEcCCCHHHHHHHHHHcCCCCCCCceeechhhhcCCCCC-CCcceeEEEecChh--hHH
Q 044020 446 VRPGVKEAVQTCLEAG-ITVRMVTGDNINTARAIAKECGILTSDGEAVEGPEFRNMSPAD-IIPKLQVMARSLPS--DKH 521 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~g-i~v~i~TGd~~~~a~~~a~~lgi~~~~~~~~~g~~~~~~~~~~-~~~~~~v~~~~~p~--~K~ 521 (563)
+.+...++++.+.++. .-.+.-+|.+...|..++.++.-.......+............ .-....++...+.+ +-.
T Consensus 27 l~~~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~ 106 (321)
T PRK11543 27 LGDDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELD 106 (321)
T ss_pred ccHHHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHH
Confidence 4467888888887764 5678888999999999998886544333333322211111111 11123344444433 456
Q ss_pred HHHHHHHHhcCCEEEEEcCCccCHHHHhhCCceEeec
Q 044020 522 TLVTQLRNTFGEVVAVTGDGTNDASALHEADIGLAMG 558 (563)
Q Consensus 522 ~~v~~l~~~~g~~v~~iGDg~ND~~~l~~a~vgiamg 558 (563)
+.++..+++ |-.|+++-+..+ .++-+.||+.+.+.
T Consensus 107 ~~~~~ak~~-g~~vI~iT~~~~-s~la~~ad~~l~~~ 141 (321)
T PRK11543 107 LIIPRLEDK-SIALLAMTGKPT-SPLGLAAKAVLDIS 141 (321)
T ss_pred HHHHHHHHc-CCeEEEEECCCC-ChhHHhCCEEEEcC
Confidence 788888888 766665555433 46678889888654
No 304
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=21.67 E-value=1.6e+02 Score=26.04 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=41.6
Q ss_pred EEEEecccCCCCcc------hHHHHHHHHhCCCe-EEEEcCCCHHHHHHHHHHcCCCC
Q 044020 436 LIAVVGIKDPVRPG------VKEAVQTCLEAGIT-VRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 436 ~lG~i~~~d~~~~~------~~~~I~~l~~~gi~-v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
.++.+++..+-|.. ++.+|+.+++.|.. |++=|......|..+-+.+|+..
T Consensus 86 yi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r 143 (165)
T KOG3139|consen 86 YIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKR 143 (165)
T ss_pred EEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceE
Confidence 45555555555542 67899999999995 99999999999999999999975
No 305
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=21.59 E-value=1.9e+02 Score=21.99 Aligned_cols=31 Identities=26% Similarity=0.316 Sum_probs=22.6
Q ss_pred eeEEEECCEEEEee---cCCcccCcEEEeCCCCe
Q 044020 25 FIQVTRDGQRQKVC---TYDLVVGDIVHLSIGDQ 55 (563)
Q Consensus 25 ~~~V~r~g~~~~i~---~~~L~~GDiI~v~~G~~ 55 (563)
.+.|-.+|..++++ ..++.|||-|.+..|--
T Consensus 16 ~A~v~~~G~~~~v~l~lv~~~~vGD~VLVH~G~A 49 (76)
T TIGR00074 16 IALVEFCGIKRDVSLDLVGEVKVGDYVLVHVGFA 49 (76)
T ss_pred EEEEEcCCeEEEEEEEeeCCCCCCCEEEEecChh
Confidence 45565667777665 35789999999998853
No 306
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=21.26 E-value=2e+02 Score=28.01 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=40.2
Q ss_pred CCceEEEEecccCCCC---cchHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCCC
Q 044020 432 SGYTLIAVVGIKDPVR---PGVKEAVQTCLEAGITVRMV-TGDNINTARAIAKECGIL 485 (563)
Q Consensus 432 ~~~~~lG~i~~~d~~~---~~~~~~I~~l~~~gi~v~i~-TGd~~~~a~~~a~~lgi~ 485 (563)
-++..+|++.....-. .+..+.++.+++.|+++++. +.-+...+..+|++.|..
T Consensus 188 ~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~ 245 (282)
T cd01017 188 YGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAK 245 (282)
T ss_pred CCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCc
Confidence 4567778776643333 35677888999999997777 556678899999999874
No 307
>PF11549 Sec31: Protein transport protein SEC31; InterPro: IPR021614 Sec31 is involved in COPII coat formation as it forms through the sequential binding of three cytoplasmic proteins: Sar1, Sec23/24 and Sec13/31. Sec13/31 is recruited by the pre-budding complex and polymerisation of Sec13/31 occurs to form an octahedral cage that is the outer shell of the COPII coat []. Sec13/31 is a hetero-tetramer which is organised as a linear array of alpha-solenoid and beta-propeller domains to form a rod in which twenty-four copies assemble to form the COPII cub-octahedron []. ; PDB: 2QTV_D.
Probab=21.22 E-value=30 Score=23.46 Aligned_cols=10 Identities=40% Similarity=0.421 Sum_probs=3.7
Q ss_pred cCCccCHHHH
Q 044020 539 GDGTNDASAL 548 (563)
Q Consensus 539 GDg~ND~~~l 548 (563)
-||.||+++-
T Consensus 23 NdGWNDLpl~ 32 (51)
T PF11549_consen 23 NDGWNDLPLK 32 (51)
T ss_dssp HS-TT---S-
T ss_pred cCcccccchh
Confidence 4888998863
No 308
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=21.22 E-value=49 Score=27.07 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=28.0
Q ss_pred EEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEeccCcCC
Q 044020 35 QKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDESSLSGQ 78 (563)
Q Consensus 35 ~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes~lTGe 78 (563)
...++++|..||| |+|-++..++..++|.+.+.+.
T Consensus 27 ~~~~VeELkEgdI---------L~e~I~~k~~~v~~d~~~~~~r 61 (110)
T PF06819_consen 27 DKKPVEELKEGDI---------LGEIIYEKDDGVYRDRSSFFKR 61 (110)
T ss_pred hcccHhhcCccce---------ehheEEEeCCcEEEecccHHHH
Confidence 3567899999996 6888888888888888876554
No 309
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.05 E-value=1.5e+02 Score=29.20 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=28.1
Q ss_pred cCCCCcchHHHHHHHHhCCCe---EEEEcCCCHH------HHHHHHHHcCCCC
Q 044020 443 KDPVRPGVKEAVQTCLEAGIT---VRMVTGDNIN------TARAIAKECGILT 486 (563)
Q Consensus 443 ~d~~~~~~~~~I~~l~~~gi~---v~i~TGd~~~------~a~~~a~~lgi~~ 486 (563)
.+.++++.++.++++++.|++ .++.-|+++. .....|+++|+..
T Consensus 11 A~~i~~~l~~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~ 63 (297)
T PRK14167 11 AAQIRDDLTDAIETLEDAGVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEA 63 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 345677777778888777764 3555666653 3455677777754
No 310
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=21.05 E-value=3.3e+02 Score=21.36 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=31.7
Q ss_pred cchHHHHHHHHhCC--CeEEEEcCCCHHHHHHHHHHcCCCC
Q 044020 448 PGVKEAVQTCLEAG--ITVRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 448 ~~~~~~I~~l~~~g--i~v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
.+..+.++++++.+ .+++++|+........-+.+.|...
T Consensus 56 ~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~ 96 (112)
T PF00072_consen 56 GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADD 96 (112)
T ss_dssp SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESE
T ss_pred ccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCE
Confidence 56778888888755 8899999888877788888999875
No 311
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=21.00 E-value=1.4e+02 Score=23.90 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=24.4
Q ss_pred EEEEeecCCcccCcEEEeCCCCeeeceEEEEeeCceEEEec
Q 044020 33 QRQKVCTYDLVVGDIVHLSIGDQVPAYGIFISGHSLLIDES 73 (563)
Q Consensus 33 ~~~~i~~~~L~~GDiI~v~~G~~iPaD~~ll~g~~l~Vdes 73 (563)
....++.++++|||+|.... .-.|.-.-+.-|+.-.+..+
T Consensus 43 ~~~~~~~~~~~pGDlif~~~-~~~~~Hvgiy~g~~~~iha~ 82 (105)
T PF00877_consen 43 FQKRVPISELQPGDLIFFKG-GGGISHVGIYLGDGKFIHAS 82 (105)
T ss_dssp EEEHEEGGG-TTTEEEEEEG-TGGEEEEEEEEETTEEEEEE
T ss_pred cccccchhcCCcccEEEEeC-CccCCEeEEEEeCCeEEEeC
Confidence 34468999999999999999 43444443443444334333
No 312
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=20.88 E-value=1.7e+02 Score=23.87 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=30.7
Q ss_pred chHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 449 GVKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 449 ~~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
...+..+++++.|++++.+|-|+......+.++.++.
T Consensus 47 ~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 47 ELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred HHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence 4455666777889999999999999999999988854
No 313
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=20.86 E-value=1.1e+02 Score=28.89 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCEEEEEcCCc-cCHHHHhhCCce
Q 044020 521 HTLVTQLRNTFGEVVAVTGDGT-NDASALHEADIG 554 (563)
Q Consensus 521 ~~~v~~l~~~~g~~v~~iGDg~-ND~~~l~~a~vg 554 (563)
..+++.+.....+.++||||.. +|+.+-+.+|+-
T Consensus 195 ~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~ 229 (236)
T TIGR01460 195 RAALNLLQARPERRDVMVGDNLRTDILGAKNAGFD 229 (236)
T ss_pred HHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCc
Confidence 3444444433123359999998 899999999883
No 314
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=20.79 E-value=1.1e+02 Score=21.31 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=26.8
Q ss_pred CeeEE-EECCEEEEeecC-CcccCcEEEeCCCCeeec
Q 044020 24 IFIQV-TRDGQRQKVCTY-DLVVGDIVHLSIGDQVPA 58 (563)
Q Consensus 24 ~~~~V-~r~g~~~~i~~~-~L~~GDiI~v~~G~~iPa 58 (563)
.++.| ..||+..+|+.. +..+||.|.+.+.++.+.
T Consensus 6 ~~aiVlT~dGeF~~ik~~~~~~vG~eI~~~~~~~~~~ 42 (56)
T PF12791_consen 6 KYAIVLTPDGEFIKIKRKPGMEVGQEIEFDEKDIINK 42 (56)
T ss_pred CEEEEEcCCCcEEEEeCCCCCcccCEEEEechhhccc
Confidence 34444 478999888754 699999999999887664
No 315
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=20.78 E-value=21 Score=33.12 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=54.9
Q ss_pred HHHHHHHHhHhHhhhhccCCCCCCCCCCCCCceEEEEecccCCCCcchHHHHHHHHhCCCeEEEEcC-CCHHHHHHHHHH
Q 044020 403 NGFASEALRTLCLAFKDLNDSSNENNIPDSGYTLIAVVGIKDPVRPGVKEAVQTCLEAGITVRMVTG-DNINTARAIAKE 481 (563)
Q Consensus 403 ~~~~~~G~r~i~~a~~~l~~~~~~~~~~~~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi~v~i~TG-d~~~~a~~~a~~ 481 (563)
..+...|++++-+.. +.+.+.......+.+-.++++-++...-.++.++.++.|++.|+|--+.+| -..+..+.++++
T Consensus 126 ~ml~~aGfevidLG~-dvP~e~fve~a~e~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~ 204 (227)
T COG5012 126 TMLEAAGFEVIDLGR-DVPVEEFVEKAKELKPDLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADK 204 (227)
T ss_pred HHHHhCCcEEEecCC-CCCHHHHHHHHHHcCCcEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHH
Confidence 344556777665552 111111111111334578888888888888999999999999999666665 455677899999
Q ss_pred cCCC
Q 044020 482 CGIL 485 (563)
Q Consensus 482 lgi~ 485 (563)
.|-+
T Consensus 205 iGAD 208 (227)
T COG5012 205 IGAD 208 (227)
T ss_pred hCCC
Confidence 9987
No 316
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.67 E-value=1.7e+02 Score=25.69 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=34.2
Q ss_pred CcchHHHHHHHHhCCCe-EEEEcCCCHHHHHHHHHHcCCCC
Q 044020 447 RPGVKEAVQTCLEAGIT-VRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 447 ~~~~~~~I~~l~~~gi~-v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
-|+-.+-..+|+.+|+. ++.+|.+++......++.+|-..
T Consensus 64 vPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~ 104 (171)
T KOG0541|consen 64 VPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGAND 104 (171)
T ss_pred CchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccc
Confidence 36777888999999996 88899999999999999997643
No 317
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=20.66 E-value=2.1e+02 Score=23.98 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 044020 451 KEAVQTCLEAGITVRMVTGDNINTARAIAKECGI 484 (563)
Q Consensus 451 ~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi 484 (563)
.+..+++++.|+.++-+|-|+...+..++++.++
T Consensus 47 ~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 80 (140)
T cd03017 47 RDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGL 80 (140)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 3344445555666666666666666666666554
No 318
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=20.60 E-value=93 Score=29.61 Aligned_cols=33 Identities=9% Similarity=0.042 Sum_probs=26.1
Q ss_pred CCcchHHHHHHHHhC-CCeEEEEcCCCHHHHHHH
Q 044020 446 VRPGVKEAVQTCLEA-GITVRMVTGDNINTARAI 478 (563)
Q Consensus 446 ~~~~~~~~I~~l~~~-gi~v~i~TGd~~~~a~~~ 478 (563)
+.+++.+++++|.+. +..|+++|||+.......
T Consensus 26 ~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~~~~~ 59 (244)
T TIGR00685 26 VSDRLLTILQKLAARPHNAIWIISGRKFLEKWLG 59 (244)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEECCChhhcccc
Confidence 568999999999766 567899999987665443
No 319
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.51 E-value=1.1e+02 Score=23.58 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=27.0
Q ss_pred EEecccCCC-CcchHHHHHHHHhCCCeEEEEcCCCH
Q 044020 438 AVVGIKDPV-RPGVKEAVQTCLEAGITVRMVTGDNI 472 (563)
Q Consensus 438 G~i~~~d~~-~~~~~~~I~~l~~~gi~v~i~TGd~~ 472 (563)
-.+.++-+= ++...+.++.|+++|+++...|.+..
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~~~~ 77 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVDLSDDEL 77 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEECCCCHH
Confidence 345556555 67899999999999999988776543
No 320
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.47 E-value=4e+02 Score=22.64 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=41.7
Q ss_pred CCceEEEEecccCCCCcchHHHHHHHHhCCC-e-EEEEcCCCHHHHHHHHHHcCCCC
Q 044020 432 SGYTLIAVVGIKDPVRPGVKEAVQTCLEAGI-T-VRMVTGDNINTARAIAKECGILT 486 (563)
Q Consensus 432 ~~~~~lG~i~~~d~~~~~~~~~I~~l~~~gi-~-v~i~TGd~~~~a~~~a~~lgi~~ 486 (563)
.+-..+|+-++...-.+..++.++.|+++|. . .+++=|-.+..-....+++|++.
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~ 108 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAE 108 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCE
Confidence 4557888888888888899999999999886 3 35554445555567789999975
No 321
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=20.38 E-value=1.1e+02 Score=29.11 Aligned_cols=36 Identities=31% Similarity=0.352 Sum_probs=29.2
Q ss_pred hHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 044020 450 VKEAVQTCLEAGITVRMVTGDNINTARAIAKECGIL 485 (563)
Q Consensus 450 ~~~~I~~l~~~gi~v~i~TGd~~~~a~~~a~~lgi~ 485 (563)
..+.+.++..+|+.+++.-+-+...+..+|+++|+.
T Consensus 181 s~emv~Ka~~aGipvivS~sapT~~av~~A~~~git 216 (236)
T PF02634_consen 181 SSEMVQKAARAGIPVIVSRSAPTSLAVELARKLGIT 216 (236)
T ss_dssp -HHHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-E
T ss_pred CHHHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCE
Confidence 567899999999999999999999999999999985
No 322
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=20.08 E-value=1.5e+02 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=22.0
Q ss_pred EEEECCEEEEeecCCcccCcEEEeCCC
Q 044020 27 QVTRDGQRQKVCTYDLVVGDIVHLSIG 53 (563)
Q Consensus 27 ~V~r~g~~~~i~~~~L~~GDiI~v~~G 53 (563)
.|.-||+...+++..+.+||.|.|...
T Consensus 115 ~V~VNGk~v~~ps~~Vk~GD~I~V~~~ 141 (201)
T CHL00113 115 HILVNGRIVDIPSYRCKPKDIITVKDK 141 (201)
T ss_pred cEEECCEEecCccccCCCCCEEEEccc
Confidence 344488888899999999999999754
Done!