BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044021
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 87/103 (84%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
+IKG WT +ED+ +I+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
EED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 87/103 (84%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
+IKG WT +ED+ +I+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
EED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 87/103 (84%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
+IKG WT +ED+ +I+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
EED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 145 bits (365), Expect = 6e-35, Method: Composition-based stats.
Identities = 61/104 (58%), Positives = 88/104 (84%)
Query: 182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWS 241
+++KG WT +ED+ +I LV ++GTK+W++IAK + GR+GKQCRERW+NHL P++KK +W+
Sbjct: 4 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
EEED I+ +AHK +GNRWAEIA+ L GRT+N +KNHWN+T +R+
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 82/101 (81%)
Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEE 244
KG WT +ED+ +I V ++G K+WS IAK + GR+GKQCRERW+NHL P++KK +W+EEE
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 245 DMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
D I+ QAHK +GNRWAEIA+ L GRT+N +KNHWN+T RR+
Sbjct: 87 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 71/112 (63%)
Query: 184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEE 243
+KG +T ED ++ V ++G + W I + R KQCRERW+NHL P + K AW+ E
Sbjct: 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQL 295
ED + + + ++G++W+ IA+ + GRT+N IKN WN++ ++ S + K++
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERW 227
++K WTP+ED + R + G+ KWSVIAK + GR + RW
Sbjct: 52 VVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGRTDNAIKNRW 95
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEE 244
K ++TP+ED ML R VAQHG+ W +IA R +QCR+RW N+L P I W+ EE
Sbjct: 11 KQKFTPEEDEMLKRAVAQHGSD-WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 245 DMILIQAHKEVGNRWAEIARRLIGRTENTIKNHW 278
D +L+Q +E G +WA IA+ GRT+ IKN W
Sbjct: 70 DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 63/99 (63%)
Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEE 244
K ++T +ED L +LV ++G K W I++ M R +QCRERW N++ P ++ + WS EE
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 245 DMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR 283
DM+L Q + E G +W +I++ L R++N I+N W R
Sbjct: 61 DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIAR 99
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 79.0 bits (193), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/52 (63%), Positives = 44/52 (84%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
+IKG WT +ED+ LI+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 31.6 bits (70), Expect = 1.00, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 237 KEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWN 279
K W++EED LI+ ++ G RW+ IA+ L GR + W+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 234 DIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
++KK +W+EEED IL QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI 235
+ K WT +EDR+L + + G + W+ IAK + GR + W + ++ +
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
+IKG WT +ED+ +I+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 237 KEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWN 279
K W++EED +I+ ++ G RW+ IA+ L GR + W+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 235 IKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
+KK +W+EEED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI 235
+ K WT +EDR++ + + G + W+ IAK + GR + W + ++ +
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 77.0 bits (188), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
+IKG WT +ED+ +I LV ++G K+WSVIAK + GR+GKQCRERW+NHL P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 237 KEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWN 279
K W++EED +I+ ++ G RW+ IA+ L GR + W+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human
Cell Division Cycle 5-Like Protein
Length = 70
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 188 WTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWS 241
W ED +L V ++G +WS IA + + KQC+ RWY L P IKK WS
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
K +WT +ED L +LV Q+GT W VIA + R QC+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
K +WT +ED L +LV Q+GT W VIA + R QC+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHL 231
K +WT +ED L LV Q G + W +A R +QC+ RW L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 240 WSEEEDMILIQA----HKEVGNRWAEIARRLIGRTENTIKNHW 278
WS +E+ +A K+ +RWA +AR + GRT +K H+
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2,
Northeast Structural Genomics Consortium Target Hr8254a
Length = 73
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 188 WTPQEDRML---IRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEE 244
WT +E ++L ++ + ++W IA+A+ GR K C +R Y L +K + ++E+
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKR-YKELVEMVKAKKAAQEQ 64
Query: 245 DMILIQAHK 253
+ +A K
Sbjct: 65 VLNASRAKK 73
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 188 WTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHL 231
WT QE+ L+ V G W +A M + ++C + + +
Sbjct: 11 WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,430,881
Number of Sequences: 62578
Number of extensions: 559307
Number of successful extensions: 948
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 42
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)