Query 044021
Match_columns 440
No_of_seqs 332 out of 1556
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 10:42:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03212 Transcription repress 100.0 1.4E-31 3E-36 258.0 11.8 112 179-290 19-131 (249)
2 KOG0048 Transcription factor, 100.0 8.7E-31 1.9E-35 253.8 11.5 112 179-290 3-115 (238)
3 PLN03091 hypothetical protein; 100.0 1.2E-29 2.6E-34 260.3 18.4 110 179-288 8-118 (459)
4 KOG0049 Transcription factor, 99.8 1.2E-19 2.6E-24 192.1 7.7 121 164-284 339-463 (939)
5 KOG0049 Transcription factor, 99.8 3.8E-19 8.3E-24 188.3 9.8 128 165-292 233-416 (939)
6 PF13921 Myb_DNA-bind_6: Myb-l 99.6 9.3E-16 2E-20 118.0 5.7 60 188-248 1-60 (60)
7 COG5147 REB1 Myb superfamily p 99.5 3E-14 6.5E-19 151.0 7.5 108 180-287 15-122 (512)
8 KOG0050 mRNA splicing protein 99.5 2.2E-14 4.7E-19 149.8 5.6 106 183-289 5-110 (617)
9 PLN03212 Transcription repress 99.5 5.3E-15 1.2E-19 143.5 0.6 80 156-236 48-128 (249)
10 PLN03091 hypothetical protein; 99.4 2.6E-14 5.6E-19 147.8 2.1 69 165-234 47-115 (459)
11 KOG0051 RNA polymerase I termi 99.4 2.1E-13 4.5E-18 146.0 7.7 102 184-287 383-512 (607)
12 PF00249 Myb_DNA-binding: Myb- 99.4 1.5E-13 3.2E-18 101.9 3.1 47 185-231 1-48 (48)
13 KOG0048 Transcription factor, 99.3 3.6E-13 7.9E-18 130.9 2.8 76 156-232 32-108 (238)
14 PF00249 Myb_DNA-binding: Myb- 99.3 2.4E-12 5.2E-17 95.4 5.9 46 237-282 1-48 (48)
15 PF13921 Myb_DNA-bind_6: Myb-l 99.2 2.4E-11 5.2E-16 93.4 5.9 54 240-293 1-54 (60)
16 smart00717 SANT SANT SWI3, AD 99.1 1.2E-10 2.6E-15 83.7 5.9 47 237-283 1-48 (49)
17 smart00717 SANT SANT SWI3, AD 99.1 9.8E-11 2.1E-15 84.1 4.2 48 185-232 1-48 (49)
18 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 1.1E-09 2.3E-14 77.6 6.0 43 239-281 1-44 (45)
19 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 7E-10 1.5E-14 78.5 3.8 44 187-230 1-44 (45)
20 KOG0051 RNA polymerase I termi 98.9 4E-09 8.8E-14 113.5 9.6 119 185-304 308-452 (607)
21 COG5147 REB1 Myb superfamily p 98.7 1.1E-08 2.5E-13 108.9 3.6 119 164-284 51-169 (512)
22 KOG0050 mRNA splicing protein 98.4 5.6E-09 1.2E-13 109.8 -5.9 83 146-231 18-103 (617)
23 TIGR01557 myb_SHAQKYF myb-like 97.9 3.6E-05 7.8E-10 59.8 6.0 47 237-283 3-55 (57)
24 KOG0457 Histone acetyltransfer 97.6 4.6E-05 1E-09 79.6 3.8 51 182-232 69-119 (438)
25 TIGR01557 myb_SHAQKYF myb-like 97.5 9.8E-05 2.1E-09 57.4 3.9 47 185-231 3-54 (57)
26 KOG0457 Histone acetyltransfer 97.4 0.00024 5.1E-09 74.5 6.3 50 235-284 70-120 (438)
27 TIGR02894 DNA_bind_RsfA transc 97.3 0.00031 6.8E-09 65.0 5.2 52 236-288 3-61 (161)
28 PF13325 MCRS_N: N-terminal re 97.1 0.0018 3.9E-08 62.2 7.8 97 187-285 1-129 (199)
29 COG5259 RSC8 RSC chromatin rem 97.0 0.00071 1.5E-08 71.5 4.8 45 237-281 279-323 (531)
30 KOG1279 Chromatin remodeling f 97.0 0.00098 2.1E-08 71.9 5.4 48 236-283 252-299 (506)
31 PF13837 Myb_DNA-bind_4: Myb/S 96.8 0.0015 3.2E-08 53.5 4.4 50 237-286 1-68 (90)
32 COG5259 RSC8 RSC chromatin rem 96.8 0.001 2.2E-08 70.4 3.4 46 184-230 278-323 (531)
33 KOG1279 Chromatin remodeling f 96.5 0.002 4.3E-08 69.6 3.4 63 167-230 226-297 (506)
34 PLN03142 Probable chromatin-re 96.5 0.011 2.3E-07 69.0 9.5 100 187-286 826-988 (1033)
35 PF13837 Myb_DNA-bind_4: Myb/S 96.4 0.0021 4.6E-08 52.5 2.2 46 186-231 2-64 (90)
36 TIGR02894 DNA_bind_RsfA transc 96.3 0.02 4.2E-07 53.3 8.4 48 184-232 3-56 (161)
37 PRK13923 putative spore coat p 96.3 0.0053 1.1E-07 57.6 4.5 51 236-287 4-61 (170)
38 PF08914 Myb_DNA-bind_2: Rap1 96.1 0.0087 1.9E-07 47.8 4.4 50 237-286 2-61 (65)
39 PF08914 Myb_DNA-bind_2: Rap1 95.8 0.0048 1E-07 49.3 1.7 51 185-235 2-61 (65)
40 COG5114 Histone acetyltransfer 95.7 0.012 2.7E-07 59.9 4.4 46 238-283 64-110 (432)
41 PF13873 Myb_DNA-bind_5: Myb/S 95.4 0.019 4.2E-07 46.2 3.9 47 185-231 2-69 (78)
42 COG5114 Histone acetyltransfer 95.3 0.0099 2.2E-07 60.5 2.2 48 185-232 63-110 (432)
43 PF13873 Myb_DNA-bind_5: Myb/S 95.0 0.07 1.5E-06 42.9 6.0 50 237-286 2-73 (78)
44 PRK13923 putative spore coat p 94.5 0.022 4.7E-07 53.6 2.1 49 183-232 3-57 (170)
45 PF09111 SLIDE: SLIDE; InterP 94.2 0.1 2.2E-06 46.4 5.7 52 234-285 46-113 (118)
46 PF12776 Myb_DNA-bind_3: Myb/S 91.1 0.68 1.5E-05 38.2 6.2 46 239-284 1-64 (96)
47 KOG1194 Predicted DNA-binding 90.5 1.2 2.6E-05 47.8 8.7 52 236-287 186-237 (534)
48 KOG4282 Transcription factor G 90.3 0.52 1.1E-05 48.3 5.8 51 237-287 54-118 (345)
49 COG5118 BDP1 Transcription ini 88.6 0.7 1.5E-05 48.4 5.2 47 238-284 366-412 (507)
50 PF09111 SLIDE: SLIDE; InterP 88.2 0.46 1E-05 42.2 3.2 48 182-229 46-108 (118)
51 COG5118 BDP1 Transcription ini 88.0 0.44 9.5E-06 49.9 3.3 44 186-230 366-409 (507)
52 KOG4282 Transcription factor G 87.4 0.46 1E-05 48.7 3.1 47 186-232 55-114 (345)
53 KOG2656 DNA methyltransferase 86.4 0.54 1.2E-05 49.4 2.9 51 237-287 130-186 (445)
54 PF12776 Myb_DNA-bind_3: Myb/S 84.5 1.2 2.6E-05 36.7 3.6 43 187-229 1-60 (96)
55 PF11626 Rap1_C: TRF2-interact 83.2 1.7 3.6E-05 36.3 4.0 31 181-214 43-81 (87)
56 PF08281 Sigma70_r4_2: Sigma-7 82.7 3.5 7.6E-05 30.5 5.2 42 242-284 12-53 (54)
57 PF13404 HTH_AsnC-type: AsnC-t 77.0 7.9 0.00017 28.1 5.3 38 243-281 3-41 (42)
58 KOG2656 DNA methyltransferase 76.2 1.4 3E-05 46.4 1.6 45 186-231 131-181 (445)
59 KOG4468 Polycomb-group transcr 73.5 4.7 0.0001 44.7 4.8 50 236-285 87-146 (782)
60 PRK11179 DNA-binding transcrip 72.8 7.2 0.00016 35.4 5.2 44 242-286 8-52 (153)
61 KOG4167 Predicted DNA-binding 72.2 3 6.5E-05 47.2 3.0 42 186-228 620-661 (907)
62 KOG4329 DNA-binding protein [G 71.4 19 0.00041 38.1 8.3 99 170-281 223-322 (445)
63 PF13404 HTH_AsnC-type: AsnC-t 70.7 4.3 9.3E-05 29.5 2.6 38 191-229 3-40 (42)
64 KOG4167 Predicted DNA-binding 70.0 35 0.00076 39.1 10.5 45 237-281 619-663 (907)
65 PRK11169 leucine-responsive tr 69.4 8.7 0.00019 35.3 5.0 44 242-286 13-57 (164)
66 KOG1194 Predicted DNA-binding 68.7 20 0.00043 38.8 8.0 49 238-286 370-418 (534)
67 PF04545 Sigma70_r4: Sigma-70, 67.2 21 0.00045 26.1 5.7 42 243-285 7-48 (50)
68 PF11035 SnAPC_2_like: Small n 66.3 20 0.00044 37.1 7.2 50 237-286 21-74 (344)
69 PF11626 Rap1_C: TRF2-interact 64.5 4.2 9.1E-05 33.9 1.7 17 233-249 43-59 (87)
70 PRK11179 DNA-binding transcrip 64.2 6.6 0.00014 35.6 3.1 46 190-236 8-53 (153)
71 PF13325 MCRS_N: N-terminal re 63.8 12 0.00027 36.2 5.0 44 239-283 1-47 (199)
72 PF04504 DUF573: Protein of un 60.6 19 0.00042 30.8 5.1 49 237-285 4-65 (98)
73 PF11035 SnAPC_2_like: Small n 58.8 63 0.0014 33.6 9.2 87 184-283 20-127 (344)
74 PRK11169 leucine-responsive tr 57.8 8.1 0.00018 35.5 2.5 45 190-235 13-57 (164)
75 TIGR02985 Sig70_bacteroi1 RNA 56.3 28 0.00061 30.2 5.6 42 243-285 116-157 (161)
76 KOG3841 TEF-1 and related tran 55.6 34 0.00073 36.4 6.7 59 236-294 75-154 (455)
77 smart00595 MADF subfamily of S 53.5 23 0.00049 28.7 4.3 26 258-284 29-54 (89)
78 PLN03142 Probable chromatin-re 52.1 13 0.00028 44.1 3.5 35 181-215 922-956 (1033)
79 PF07750 GcrA: GcrA cell cycle 49.4 22 0.00048 33.2 4.0 41 239-280 2-42 (162)
80 PF01388 ARID: ARID/BRIGHT DNA 48.4 40 0.00086 27.7 5.0 38 246-283 39-89 (92)
81 smart00344 HTH_ASNC helix_turn 46.0 48 0.001 27.7 5.2 43 243-286 3-46 (108)
82 KOG2009 Transcription initiati 45.6 19 0.00042 40.0 3.4 49 236-284 408-456 (584)
83 TIGR02937 sigma70-ECF RNA poly 43.1 56 0.0012 27.4 5.3 39 246-285 116-154 (158)
84 smart00501 BRIGHT BRIGHT, ARID 42.8 58 0.0013 27.0 5.2 39 246-284 35-86 (93)
85 KOG4329 DNA-binding protein [G 42.4 20 0.00043 37.9 2.7 43 186-229 278-321 (445)
86 PF02954 HTH_8: Bacterial regu 42.1 68 0.0015 22.9 4.7 35 243-278 5-39 (42)
87 PF07750 GcrA: GcrA cell cycle 40.8 28 0.0006 32.5 3.2 41 187-229 2-42 (162)
88 KOG2009 Transcription initiati 40.5 14 0.00031 41.0 1.4 48 181-229 405-452 (584)
89 PRK09652 RNA polymerase sigma 39.7 68 0.0015 28.5 5.5 40 245-285 133-172 (182)
90 PF10545 MADF_DNA_bdg: Alcohol 38.8 43 0.00094 26.2 3.7 27 258-284 28-55 (85)
91 cd06171 Sigma70_r4 Sigma70, re 36.8 1E+02 0.0022 21.2 5.0 41 240-282 11-51 (55)
92 PLN03162 golden-2 like transcr 36.7 1.5E+02 0.0033 31.6 8.0 46 237-282 237-287 (526)
93 KOG0385 Chromatin remodeling c 36.6 48 0.001 38.4 4.7 95 187-282 797-956 (971)
94 cd08319 Death_RAIDD Death doma 36.3 54 0.0012 27.4 3.9 29 245-274 2-30 (83)
95 KOG4468 Polycomb-group transcr 36.0 43 0.00094 37.6 4.1 47 185-232 88-144 (782)
96 COG1522 Lrp Transcriptional re 35.8 64 0.0014 28.4 4.7 45 242-287 7-52 (154)
97 PF04504 DUF573: Protein of un 35.5 67 0.0014 27.5 4.5 68 186-254 5-94 (98)
98 smart00595 MADF subfamily of S 35.3 15 0.00033 29.7 0.5 22 208-230 30-51 (89)
99 PF07638 Sigma70_ECF: ECF sigm 34.7 90 0.002 29.0 5.7 40 244-284 139-178 (185)
100 PRK11924 RNA polymerase sigma 34.5 88 0.0019 27.7 5.4 37 248-285 133-169 (179)
101 smart00344 HTH_ASNC helix_turn 34.0 44 0.00096 27.9 3.2 44 191-235 3-46 (108)
102 PRK09643 RNA polymerase sigma 33.7 94 0.002 28.8 5.6 42 243-285 137-178 (192)
103 KOG1878 Nuclear receptor coreg 33.7 15 0.00032 44.7 0.3 43 184-227 224-266 (1672)
104 KOG0384 Chromodomain-helicase 33.2 57 0.0012 39.5 4.8 72 185-264 1133-1207(1373)
105 COG1522 Lrp Transcriptional re 32.6 37 0.0008 30.0 2.6 46 190-236 7-52 (154)
106 PRK04217 hypothetical protein; 31.3 1.5E+02 0.0031 26.2 6.0 45 239-285 42-86 (110)
107 PF09420 Nop16: Ribosome bioge 30.2 95 0.0021 28.7 4.9 46 237-282 114-163 (164)
108 PF08281 Sigma70_r4_2: Sigma-7 30.0 36 0.00077 25.0 1.7 39 190-230 12-50 (54)
109 PRK09641 RNA polymerase sigma 29.8 1.1E+02 0.0025 27.5 5.4 41 244-285 140-180 (187)
110 KOG3554 Histone deacetylase co 29.0 1.2E+02 0.0026 33.3 6.0 61 209-279 267-328 (693)
111 TIGR02939 RpoE_Sigma70 RNA pol 29.0 99 0.0022 27.9 4.8 43 243-286 141-183 (190)
112 TIGR02954 Sig70_famx3 RNA poly 28.4 1.3E+02 0.0028 26.9 5.4 43 243-286 122-164 (169)
113 PF09197 Rap1-DNA-bind: Rap1, 28.0 64 0.0014 28.4 3.1 17 187-203 1-17 (105)
114 PRK09645 RNA polymerase sigma 28.0 1.4E+02 0.003 26.7 5.6 41 244-285 122-162 (173)
115 cd08803 Death_ank3 Death domai 27.6 98 0.0021 25.8 4.1 28 245-273 4-31 (84)
116 TIGR02943 Sig70_famx1 RNA poly 26.8 1.5E+02 0.0032 27.4 5.7 42 244-286 135-176 (188)
117 PRK09648 RNA polymerase sigma 26.8 1.5E+02 0.0033 27.0 5.7 39 246-285 145-183 (189)
118 PRK09637 RNA polymerase sigma 26.4 1.4E+02 0.0031 27.4 5.5 41 243-284 109-149 (181)
119 PRK09047 RNA polymerase factor 25.9 1.7E+02 0.0037 25.6 5.7 42 243-285 109-150 (161)
120 PRK12530 RNA polymerase sigma 25.9 1.5E+02 0.0033 27.2 5.6 41 244-285 138-178 (189)
121 cd08317 Death_ank Death domain 25.9 83 0.0018 25.7 3.4 28 245-273 4-31 (84)
122 PRK11923 algU RNA polymerase s 25.8 1.4E+02 0.0031 27.2 5.3 41 244-285 142-182 (193)
123 PRK12512 RNA polymerase sigma 25.7 1.6E+02 0.0035 26.6 5.6 43 243-286 134-176 (184)
124 PRK09642 RNA polymerase sigma 25.6 1.7E+02 0.0038 25.7 5.7 42 243-285 109-150 (160)
125 PF09905 DUF2132: Uncharacteri 25.0 96 0.0021 25.0 3.3 22 193-217 12-33 (64)
126 PRK12523 RNA polymerase sigma 24.8 1.6E+02 0.0034 26.5 5.3 42 243-285 122-163 (172)
127 PRK01905 DNA-binding protein F 24.7 1.8E+02 0.004 23.4 5.1 36 242-278 36-71 (77)
128 TIGR02948 SigW_bacill RNA poly 24.6 1.5E+02 0.0032 26.7 5.1 41 244-285 140-180 (187)
129 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 24.5 1.5E+02 0.0032 22.6 4.2 34 243-277 7-40 (50)
130 PRK12531 RNA polymerase sigma 24.4 1.8E+02 0.0038 26.9 5.7 41 244-285 145-185 (194)
131 PRK12515 RNA polymerase sigma 24.1 1.8E+02 0.004 26.5 5.7 41 244-285 135-175 (189)
132 PRK06759 RNA polymerase factor 23.5 1.9E+02 0.0041 25.1 5.5 31 254-285 120-150 (154)
133 TIGR02952 Sig70_famx2 RNA poly 23.4 2E+02 0.0042 25.4 5.6 41 244-285 126-166 (170)
134 PRK12524 RNA polymerase sigma 22.3 2E+02 0.0043 26.6 5.6 42 243-285 139-180 (196)
135 PRK12529 RNA polymerase sigma 22.3 2.1E+02 0.0046 26.0 5.7 42 243-285 130-171 (178)
136 PRK00118 putative DNA-binding 22.0 2.4E+02 0.0051 24.6 5.6 42 242-284 19-60 (104)
137 PRK12532 RNA polymerase sigma 21.9 1.6E+02 0.0036 27.0 4.9 42 243-285 139-180 (195)
138 COG2963 Transposase and inacti 21.5 2.6E+02 0.0057 23.7 5.8 43 237-280 5-48 (116)
139 cd08318 Death_NMPP84 Death dom 21.2 1.4E+02 0.003 24.8 3.8 26 248-274 10-35 (86)
140 smart00005 DEATH DEATH domain, 21.0 1.3E+02 0.0027 24.2 3.5 24 244-267 4-28 (88)
141 KOG0724 Zuotin and related mol 21.0 66 0.0014 32.7 2.3 45 238-282 54-98 (335)
142 PRK09649 RNA polymerase sigma 20.8 2.1E+02 0.0045 26.3 5.4 41 244-285 134-174 (185)
143 TIGR02999 Sig-70_X6 RNA polyme 20.7 2.3E+02 0.0051 25.4 5.6 41 244-285 138-178 (183)
144 PRK12527 RNA polymerase sigma 20.5 2.5E+02 0.0055 24.7 5.7 42 243-285 108-149 (159)
145 PRK00430 fis global DNA-bindin 20.2 2.4E+02 0.0053 23.9 5.2 35 243-278 55-89 (95)
No 1
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.97 E-value=1.4e-31 Score=258.01 Aligned_cols=112 Identities=36% Similarity=0.773 Sum_probs=105.7
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-cCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044021 179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM-TGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGN 257 (440)
Q Consensus 179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l-pgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~ 257 (440)
-++.++|++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++.+||+
T Consensus 19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn 98 (249)
T PLN03212 19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN 98 (249)
T ss_pred ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence 3578899999999999999999999998999999988 699999999999999999999999999999999999999999
Q ss_pred chHHHHHhcCCCCHHHHHHHHHHhhHHHhhhhh
Q 044021 258 RWAEIARRLIGRTENTIKNHWNATKRRQQSKRN 290 (440)
Q Consensus 258 kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~k 290 (440)
+|+.||+.|+|||+++||+||+.+++++..+..
T Consensus 99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~ 131 (249)
T PLN03212 99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG 131 (249)
T ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcC
Confidence 999999999999999999999999988765443
No 2
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.97 E-value=8.7e-31 Score=253.83 Aligned_cols=112 Identities=40% Similarity=0.769 Sum_probs=105.5
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc-CCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044021 179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-GRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGN 257 (440)
Q Consensus 179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp-gRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~ 257 (440)
+++.+.||+||+|||++|+++|++||.++|..||+.++ +|++++||.||.|||+|+++++.||+|||.+|++++..+|+
T Consensus 3 kk~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GN 82 (238)
T KOG0048|consen 3 RNPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGN 82 (238)
T ss_pred CCccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCc
Confidence 34556689999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred chHHHHHhcCCCCHHHHHHHHHHhhHHHhhhhh
Q 044021 258 RWAEIARRLIGRTENTIKNHWNATKRRQQSKRN 290 (440)
Q Consensus 258 kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~k 290 (440)
+|+.||++|||||++.|||+|+..++|+..+..
T Consensus 83 rWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 83 RWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999888765543
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=260.30 Aligned_cols=110 Identities=41% Similarity=0.832 Sum_probs=104.5
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-cCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044021 179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM-TGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGN 257 (440)
Q Consensus 179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l-pgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~ 257 (440)
.+..++||+||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++++||+
T Consensus 8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn 87 (459)
T PLN03091 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN 87 (459)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence 3467889999999999999999999999999999988 599999999999999999999999999999999999999999
Q ss_pred chHHHHHhcCCCCHHHHHHHHHHhhHHHhhh
Q 044021 258 RWAEIARRLIGRTENTIKNHWNATKRRQQSK 288 (440)
Q Consensus 258 kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk 288 (440)
+|++||+.|+|||+++||+||+.++||+.+.
T Consensus 88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~ 118 (459)
T PLN03091 88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ 118 (459)
T ss_pred chHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987654
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.79 E-value=1.2e-19 Score=192.10 Aligned_cols=121 Identities=31% Similarity=0.465 Sum_probs=110.7
Q ss_pred hhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHH
Q 044021 164 KRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEE 243 (440)
Q Consensus 164 ~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~E 243 (440)
-.+++.+.-.||...++|.+++|.||.+||.+|+.+|.+||.++|.+|.+.+|||+..|||+||.|.|+...+++.||-.
T Consensus 339 pgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~ 418 (939)
T KOG0049|consen 339 PGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLV 418 (939)
T ss_pred CCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeec
Confidence 45666777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CchHHHHHhcCCCCH---HHHHHHHHHhhHH
Q 044021 244 EDMILIQAHKEVG-NRWAEIARRLIGRTE---NTIKNHWNATKRR 284 (440)
Q Consensus 244 ED~~Ll~lv~k~G-~kW~~IAk~l~gRT~---~qcr~Rw~~llrr 284 (440)
||+.|+.+|++|| ++|.+||..||+||. ..||.|+-.+..+
T Consensus 419 edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~r 463 (939)
T KOG0049|consen 419 EDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLR 463 (939)
T ss_pred chHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999 789999999999999 5566666555444
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.78 E-value=3.8e-19 Score=188.31 Aligned_cols=128 Identities=22% Similarity=0.416 Sum_probs=111.2
Q ss_pred hcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcC-Cccccccc------------------
Q 044021 165 RNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTG-RVGKQCRE------------------ 225 (440)
Q Consensus 165 r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpg-Rt~~QCr~------------------ 225 (440)
+.+.-.|+..|.++++|.++|..|+.|||++|..+...+|-.+|.+||..|.. |+..||.+
T Consensus 233 srS~~~~~~~W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEe 312 (939)
T KOG0049|consen 233 SRSEWAVKSKWYNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEE 312 (939)
T ss_pred cCCHHHHHHHHhhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhh
Confidence 45556899999999999999999999999999988887777677777777644 66666655
Q ss_pred ------------------------------------hhcccccCCCCCCCCCHHHHHHHHHHHHHhCCc-hHHHHHhcCC
Q 044021 226 ------------------------------------RWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNR-WAEIARRLIG 268 (440)
Q Consensus 226 ------------------------------------Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~k-W~~IAk~l~g 268 (440)
||.+.|+|.+++|+||++||.+|+.+|.+||.+ |.+|-..+||
T Consensus 313 d~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPn 392 (939)
T KOG0049|consen 313 DTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPN 392 (939)
T ss_pred hHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCC
Confidence 788888999999999999999999999999965 9999999999
Q ss_pred CCHHHHHHHHHHhhHHHhhhhhhh
Q 044021 269 RTENTIKNHWNATKRRQQSKRNTR 292 (440)
Q Consensus 269 RT~~qcr~Rw~~llrr~~sk~k~~ 292 (440)
|+..|||.||...+.+..++.++.
T Consensus 393 RSdsQcR~RY~nvL~~s~K~~rW~ 416 (939)
T KOG0049|consen 393 RSDSQCRERYTNVLNRSAKVERWT 416 (939)
T ss_pred ccHHHHHHHHHHHHHHhhccCcee
Confidence 999999999999998877766554
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.60 E-value=9.3e-16 Score=118.04 Aligned_cols=60 Identities=47% Similarity=0.974 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHH
Q 044021 188 WTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMIL 248 (440)
Q Consensus 188 WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~L 248 (440)
||+|||++|+++|.+||. +|..||+.|+.|++.||+.||.++|.+.+++++||++||.+|
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 999999999999999996 599999999669999999999999999999999999999987
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.49 E-value=3e-14 Score=150.98 Aligned_cols=108 Identities=37% Similarity=0.618 Sum_probs=102.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 044021 180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRW 259 (440)
Q Consensus 180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW 259 (440)
...++.|.|+..||+.|..+|+.||+.+|..||..+.-|+++||+.||+++++|.+++..|+.+||..|+.+..++|..|
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w 94 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence 34457889999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021 260 AEIARRLIGRTENTIKNHWNATKRRQQS 287 (440)
Q Consensus 260 ~~IAk~l~gRT~~qcr~Rw~~llrr~~s 287 (440)
+.||..+++|+..+|.+||..++....+
T Consensus 95 stia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 95 STIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhhccccCccchHHHHHHHHHHhhhhhc
Confidence 9999999999999999999988877655
No 8
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=2.2e-14 Score=149.75 Aligned_cols=106 Identities=34% Similarity=0.583 Sum_probs=100.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 044021 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEI 262 (440)
Q Consensus 183 ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~I 262 (440)
++.|-|+.-||++|..+|.+||...|++||+.++..+++||+.||..+|+|.+++..|+.|||++||.+.......|..|
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI 84 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI 84 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHhhHHHhhhh
Q 044021 263 ARRLIGRTENTIKNHWNATKRRQQSKR 289 (440)
Q Consensus 263 Ak~l~gRT~~qcr~Rw~~llrr~~sk~ 289 (440)
+..| ||+.+||-.||+.++--..++.
T Consensus 85 a~i~-gr~~~qc~eRy~~ll~~~~s~~ 110 (617)
T KOG0050|consen 85 ADIM-GRTSQQCLERYNNLLDVYVSYH 110 (617)
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence 9999 9999999999999887765443
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.48 E-value=5.3e-15 Score=143.49 Aligned_cols=80 Identities=19% Similarity=0.355 Sum_probs=70.3
Q ss_pred CCcchHHh-hhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021 156 ENAYNQDQ-KRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234 (440)
Q Consensus 156 ~N~~~q~~-~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ 234 (440)
|..+++.. ..++..|||.||.++++|.+++|+||+|||++|++++..||.+ |..||+.|+|||..+|+.||+.+++..
T Consensus 48 W~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK-Ws~IAk~LpGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 48 WRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR-WSLIAGRIPGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred HHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc-HHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence 44444444 3678899999999999999999999999999999999999986 999999999999999999999888754
Q ss_pred CC
Q 044021 235 IK 236 (440)
Q Consensus 235 ik 236 (440)
+.
T Consensus 127 l~ 128 (249)
T PLN03212 127 LL 128 (249)
T ss_pred HH
Confidence 33
No 10
>PLN03091 hypothetical protein; Provisional
Probab=99.44 E-value=2.6e-14 Score=147.84 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=65.0
Q ss_pred hcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021 165 RNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234 (440)
Q Consensus 165 r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ 234 (440)
.++.+|||.||.++++|.++||+||+|||++|++++++||.+ |..||+.|+||++.+|+.||+.+|+..
T Consensus 47 gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK-WskIAk~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 47 QRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR-WSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred CcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc-hHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999986 999999999999999999999877643
No 11
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.42 E-value=2.1e-13 Score=146.00 Aligned_cols=102 Identities=30% Similarity=0.632 Sum_probs=93.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC--CCCCCCHHHHHHHHHHHH-------H
Q 044021 184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI--KKEAWSEEEDMILIQAHK-------E 254 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i--kk~~WT~EED~~Ll~lv~-------k 254 (440)
.||+||+||++.|..+|.++|.. |..|+..| ||.+..|++||+++...+- +++.||.||.++|+.+|. +
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~-W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q 460 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGND-WKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ 460 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhccc-HHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999987 99999999 9999999999999999884 889999999999999995 3
Q ss_pred h-------------------CCchHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021 255 V-------------------GNRWAEIARRLIGRTENTIKNHWNATKRRQQS 287 (440)
Q Consensus 255 ~-------------------G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~s 287 (440)
+ +-.|+.|++.+++|+..|||.+|+.++.+-..
T Consensus 461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~ 512 (607)
T KOG0051|consen 461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSF 512 (607)
T ss_pred ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHh
Confidence 3 12599999988999999999999998877554
No 12
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.40 E-value=1.5e-13 Score=101.92 Aligned_cols=47 Identities=47% Similarity=0.877 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc-CCccccccchhcccc
Q 044021 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-GRVGKQCRERWYNHL 231 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp-gRt~~QCr~Rw~~~L 231 (440)
||+||+|||++|+++|.+||.++|..||..|+ +||+.||+.||+++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999988999999999 999999999998864
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.34 E-value=3.6e-13 Score=130.94 Aligned_cols=76 Identities=24% Similarity=0.476 Sum_probs=68.9
Q ss_pred CCcchHHhh-hcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021 156 ENAYNQDQK-RNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 156 ~N~~~q~~~-r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~ 232 (440)
|+...+... .+..++||.||.+|++|.++||.||+|||++|+++...+|.+ |..||++|||||...++.+|..+|+
T Consensus 32 W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr-Ws~IA~~LPGRTDNeIKN~Wnt~lk 108 (238)
T KOG0048|consen 32 GTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR-WSLIAGRLPGRTDNEVKNHWNTHLK 108 (238)
T ss_pred cchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH-HHHHHhhCCCcCHHHHHHHHHHHHH
Confidence 555656655 778899999999999999999999999999999999999998 9999999999999999999977664
No 14
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.33 E-value=2.4e-12 Score=95.38 Aligned_cols=46 Identities=35% Similarity=0.699 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCc-hHHHHHhcC-CCCHHHHHHHHHHhh
Q 044021 237 KEAWSEEEDMILIQAHKEVGNR-WAEIARRLI-GRTENTIKNHWNATK 282 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~k-W~~IAk~l~-gRT~~qcr~Rw~~ll 282 (440)
|++||+|||.+|+++|.+||.. |..||..|+ |||..||++||+.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988 999999999 999999999998864
No 15
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.20 E-value=2.4e-11 Score=93.45 Aligned_cols=54 Identities=35% Similarity=0.629 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHhhhhhhhh
Q 044021 240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRK 293 (440)
Q Consensus 240 WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~k~~~ 293 (440)
||+|||.+|+++|.+||.+|..||+.|+.||+.+|++||+..++...++.....
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~ 54 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTK 54 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCH
Confidence 999999999999999999999999999669999999999997766555555443
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.12 E-value=1.2e-10 Score=83.65 Aligned_cols=47 Identities=43% Similarity=0.823 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021 237 KEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKR 283 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llr 283 (440)
+++||++||.+|+.++.+|| .+|..||..|++||+.+|+.||+.+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 17
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.09 E-value=9.8e-11 Score=84.07 Aligned_cols=48 Identities=54% Similarity=1.049 Sum_probs=44.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~ 232 (440)
++.||++||.+|+.++.+||..+|..||..|++|++.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 468999999999999999995569999999999999999999987654
No 18
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.98 E-value=1.1e-09 Score=77.60 Aligned_cols=43 Identities=42% Similarity=0.865 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHh
Q 044021 239 AWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNAT 281 (440)
Q Consensus 239 ~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~l 281 (440)
+||++||..|+.++.+|| .+|..||+.+++||..+|++||+.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999999999 8999999999999999999999875
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.95 E-value=7e-10 Score=78.54 Aligned_cols=44 Identities=48% Similarity=0.949 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021 187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH 230 (440)
Q Consensus 187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~ 230 (440)
.||++||+.|++++.+||..+|..||..+++|++.+|+.||.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 59999999999999999966799999999999999999999765
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.91 E-value=4e-09 Score=113.53 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=94.0
Q ss_pred cCCCCHHHHHHHHHHHHHh----CCC-------------------ChHHHHHHhcCCccccccchhcccccCCC-CCCCC
Q 044021 185 KGQWTPQEDRMLIRLVAQH----GTK-------------------KWSVIAKAMTGRVGKQCRERWYNHLKPDI-KKEAW 240 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~----G~~-------------------nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i-kk~~W 240 (440)
-+.|+.+||.+|.+.|..| |-. -|..|...||-|+...++.+-++...+-- ++|.|
T Consensus 308 ~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~w 387 (607)
T KOG0051|consen 308 LKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGKW 387 (607)
T ss_pred hhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccCCC
Confidence 3889999999999999887 110 17888888999999988773333333333 89999
Q ss_pred CHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh--hhhhhhhHHHHHHHhhhh
Q 044021 241 SEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ--SKRNTRKQLQENYIKNVT 304 (440)
Q Consensus 241 T~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~--sk~k~~~~~~~~~i~~~~ 304 (440)
|+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+.+... .++.......+..++.++
T Consensus 388 t~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~ 452 (607)
T KOG0051|consen 388 TPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVN 452 (607)
T ss_pred CcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999988775 444444444445555554
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.67 E-value=1.1e-08 Score=108.95 Aligned_cols=119 Identities=20% Similarity=0.185 Sum_probs=106.0
Q ss_pred hhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHH
Q 044021 164 KRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEE 243 (440)
Q Consensus 164 ~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~E 243 (440)
..+...+|+.||.+++.|.++++.|+.|||+.|+.+-..+|+. |+.||..+++|+..+|.+||.+.+.+... ..||..
T Consensus 51 ~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~-wstia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~ 128 (512)
T COG5147 51 ISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYKDRRTAQQCVERYVNTLEDLSS-THDSKL 128 (512)
T ss_pred cccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch-hhhhccccCccchHHHHHHHHHHhhhhhc-cccccc
Confidence 4467889999999999999999999999999999999999998 99999999999999999999999987666 889999
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
++...+..+..|+..|..+....-.+-...|.+++..+..+
T Consensus 129 ~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~ 169 (512)
T COG5147 129 QRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLR 169 (512)
T ss_pred cchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHH
Confidence 99988888889998888888777777888888888655444
No 22
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=5.6e-09 Score=109.83 Aligned_cols=83 Identities=31% Similarity=0.472 Sum_probs=72.8
Q ss_pred CCCCccccCCCCcchHH---hhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCcccc
Q 044021 146 LPDEVSCVTGENAYNQD---QKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQ 222 (440)
Q Consensus 146 ~pde~s~~~~~N~~~q~---~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~Q 222 (440)
+...+. .++.|.++.. ..+++..+|+.||..+++|.+++-.|+.|||++|+-+.....+. |..||..| ||++.|
T Consensus 18 lkaav~-kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~q-wrtIa~i~-gr~~~q 94 (617)
T KOG0050|consen 18 LKAAVM-KYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQ-WRTIADIM-GRTSQQ 94 (617)
T ss_pred HHHHHH-HcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCc-cchHHHHh-hhhHHH
Confidence 333343 6677777666 46788999999999999999999999999999999999999987 99999999 999999
Q ss_pred ccchhcccc
Q 044021 223 CRERWYNHL 231 (440)
Q Consensus 223 Cr~Rw~~~L 231 (440)
|.+||.+.|
T Consensus 95 c~eRy~~ll 103 (617)
T KOG0050|consen 95 CLERYNNLL 103 (617)
T ss_pred HHHHHHHHH
Confidence 999998876
No 23
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.87 E-value=3.6e-05 Score=59.80 Aligned_cols=47 Identities=19% Similarity=0.478 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ch---HHHHHhcC-CC-CHHHHHHHHHHhhH
Q 044021 237 KEAWSEEEDMILIQAHKEVGN-RW---AEIARRLI-GR-TENTIKNHWNATKR 283 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~-kW---~~IAk~l~-gR-T~~qcr~Rw~~llr 283 (440)
+-.||+||..+++++++.+|. +| ..|++.|. .| |..||+.|++++.-
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999996 99 99999985 45 99999999988754
No 24
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.60 E-value=4.6e-05 Score=79.63 Aligned_cols=51 Identities=24% Similarity=0.586 Sum_probs=46.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021 182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 182 ~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~ 232 (440)
.+-...||++|+-+|++++..||-+||..||.++..|+..+|+++|.+++-
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999999999999998764
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.53 E-value=9.8e-05 Score=57.38 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=41.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCh---HHHHHHhc-CC-ccccccchhcccc
Q 044021 185 KGQWTPQEDRMLIRLVAQHGTKKW---SVIAKAMT-GR-VGKQCRERWYNHL 231 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G~~nW---~~IA~~lp-gR-t~~QCr~Rw~~~L 231 (440)
+-.||+||..+++++++.+|.++| ..|++.|. .| |..||+.+++.+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 457999999999999999998789 99999884 45 9999999987764
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.42 E-value=0.00024 Score=74.46 Aligned_cols=50 Identities=24% Similarity=0.551 Sum_probs=45.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 235 IKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 235 ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
+-...||.+|+.+||+++..|| ++|..||.+++.||..+|+.||.+..-.
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence 3456899999999999999999 8999999999999999999999876543
No 27
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.33 E-value=0.00031 Score=65.04 Aligned_cols=52 Identities=33% Similarity=0.631 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CC----chHHHHHhcCCCCHHHHHHHHHHhhHHHhhh
Q 044021 236 KKEAWSEEEDMILIQAHKEV---GN----RWAEIARRLIGRTENTIKNHWNATKRRQQSK 288 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~---G~----kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk 288 (440)
....||.|||.+|-+.|-+| |+ ....+++.| +||+.+|.-|||+.+|++...
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence 46789999999999999887 43 389999999 999999999999999987543
No 28
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=97.08 E-value=0.0018 Score=62.18 Aligned_cols=97 Identities=26% Similarity=0.469 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHh---cCCccccccchhccccc-CCC--------------------CCCCCCH
Q 044021 187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAM---TGRVGKQCRERWYNHLK-PDI--------------------KKEAWSE 242 (440)
Q Consensus 187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~l---pgRt~~QCr~Rw~~~L~-p~i--------------------kk~~WT~ 242 (440)
+|++++|-+|+.+|..-. +-..|+..+ ..-|...+.+||+..|- |.+ .+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999998876 368887765 45677888999988763 221 4578999
Q ss_pred HHHHHHHHHHHHhCC---chHHHHH-----hcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGN---RWAEIAR-----RLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~---kW~~IAk-----~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+|+++|......... .+.+|=. +-++||+.++..||..+.+..
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~ 129 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH 129 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence 999999997766654 4777733 236899999999999665543
No 29
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.02 E-value=0.00071 Score=71.51 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHh
Q 044021 237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNAT 281 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~l 281 (440)
...||.+|..+|+++++.||..|.+||+++++||..||.-||..+
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 358999999999999999999999999999999999999999765
No 30
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.97 E-value=0.00098 Score=71.85 Aligned_cols=48 Identities=17% Similarity=0.425 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021 236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR 283 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llr 283 (440)
.+..||++|..+||+++..||..|.+||.++++||..||-.|+..+-.
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LPi 299 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLPI 299 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcCc
Confidence 357899999999999999999999999999999999999999976543
No 31
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.84 E-value=0.0015 Score=53.46 Aligned_cols=50 Identities=34% Similarity=0.710 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHH------hC--C------chHHHHHhcC----CCCHHHHHHHHHHhhHHHh
Q 044021 237 KEAWSEEEDMILIQAHKE------VG--N------RWAEIARRLI----GRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k------~G--~------kW~~IAk~l~----gRT~~qcr~Rw~~llrr~~ 286 (440)
+..||.+|...||+++.+ ++ + -|..||..|. .||+.||++||..+.++=.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk 68 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYK 68 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 357999999999999877 22 1 3999999873 6999999999999776643
No 32
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.76 E-value=0.001 Score=70.38 Aligned_cols=46 Identities=20% Similarity=0.434 Sum_probs=42.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021 184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH 230 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~ 230 (440)
....||.+|.-+|+++|+.||.. |.+||.++.+|+..||-.||.++
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDd-W~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDD-WDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhh-HHHHHHHhCCCCHHHHHHHHHcC
Confidence 55699999999999999999976 99999999999999999999764
No 33
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.48 E-value=0.002 Score=69.56 Aligned_cols=63 Identities=17% Similarity=0.397 Sum_probs=51.5
Q ss_pred CCcccccccccCCC---------CCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021 167 KRIPVKRERKLPKK---------NNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH 230 (440)
Q Consensus 167 ~~~~~rrrwk~~kk---------p~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~ 230 (440)
.+..|...|..... ..-.++.||.+|+-+|+++|+.||.. |.+||.++.+|+..||-.++.+.
T Consensus 226 ~c~~c~~~g~~~~~~~~~Df~~~~~~~~~~WT~qE~lLLLE~ie~y~dd-W~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 226 LCADCYDQGEFPSEFKKSDFKVIGESARPNWTEQETLLLLEAIEMYGDD-WNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred hhHHHHhcCCccCccccccchhccccCCCCccHHHHHHHHHHHHHhccc-HHHHHhccCCCCHHHHHHHHHhc
Confidence 34566666654433 23457899999999999999999976 99999999999999999999664
No 34
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=96.48 E-value=0.011 Score=69.03 Aligned_cols=100 Identities=19% Similarity=0.361 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccc-------hhccc------c----------------------
Q 044021 187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRE-------RWYNH------L---------------------- 231 (440)
Q Consensus 187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~-------Rw~~~------L---------------------- 231 (440)
.||.-+=..++.+..+||..+-..||..|.|++...++. ||... +
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~ 905 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK 905 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888999999999989999999999888876654 21110 0
Q ss_pred ---------------cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHH------------hcCCCCHHHHHHHHHHhhH
Q 044021 232 ---------------KPDIKKEAWSEEEDMILIQAHKEVG-NRWAEIAR------------RLIGRTENTIKNHWNATKR 283 (440)
Q Consensus 232 ---------------~p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk------------~l~gRT~~qcr~Rw~~llr 283 (440)
-+..++..||+|||+.|+-.+.+|| ++|..|-. ++..||+..|..|.+.+++
T Consensus 906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 0122455799999999999999999 78999954 2458999999999999887
Q ss_pred HHh
Q 044021 284 RQQ 286 (440)
Q Consensus 284 r~~ 286 (440)
--.
T Consensus 986 ~~~ 988 (1033)
T PLN03142 986 LIE 988 (1033)
T ss_pred HHH
Confidence 653
No 35
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.35 E-value=0.0021 Score=52.52 Aligned_cols=46 Identities=35% Similarity=0.702 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHH--h----C--CC-----ChHHHHHHh----cCCccccccchhcccc
Q 044021 186 GQWTPQEDRMLIRLVAQ--H----G--TK-----KWSVIAKAM----TGRVGKQCRERWYNHL 231 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k--~----G--~~-----nW~~IA~~l----pgRt~~QCr~Rw~~~L 231 (440)
-.||.+|...|++++.. + + .. -|..||..| ..|++.||+.||.++.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 47999999999999987 2 1 11 299999988 3699999999997754
No 36
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.30 E-value=0.02 Score=53.33 Aligned_cols=48 Identities=27% Similarity=0.622 Sum_probs=41.5
Q ss_pred CcCCCCHHHHHHHHHHHHHh---CCC---ChHHHHHHhcCCccccccchhccccc
Q 044021 184 IKGQWTPQEDRMLIRLVAQH---GTK---KWSVIAKAMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~---G~~---nW~~IA~~lpgRt~~QCr~Rw~~~L~ 232 (440)
+...||.|||.+|.+.|-+| |.- -+..|+..| +||+..|.=||+.+++
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR 56 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR 56 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence 56789999999999999998 321 388899998 9999999999998886
No 37
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=96.25 E-value=0.0053 Score=57.61 Aligned_cols=51 Identities=25% Similarity=0.470 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc-------hHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021 236 KKEAWSEEEDMILIQAHKEVGNR-------WAEIARRLIGRTENTIKNHWNATKRRQQS 287 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G~k-------W~~IAk~l~gRT~~qcr~Rw~~llrr~~s 287 (440)
++..||.|||.+|-+.|-.|+.. ...++..| +||..+|..||+..+|++..
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye 61 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ 61 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence 46789999999999999888732 67777888 99999999999999997653
No 38
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.12 E-value=0.0087 Score=47.78 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC--------Cc-hHHHHHhcC-CCCHHHHHHHHHHhhHHHh
Q 044021 237 KEAWSEEEDMILIQAHKEVG--------NR-WAEIARRLI-GRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G--------~k-W~~IAk~l~-gRT~~qcr~Rw~~llrr~~ 286 (440)
+.+||.+||..|+..|.++. ++ |..+++.-+ .+|-.+.|+||.+.++.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 46899999999999996542 22 999999887 9999999999988776653
No 39
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.80 E-value=0.0048 Score=49.26 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=33.0
Q ss_pred cCCCCHHHHHHHHHHHHHhC--------CCChHHHHHHhc-CCccccccchhcccccCCC
Q 044021 185 KGQWTPQEDRMLIRLVAQHG--------TKKWSVIAKAMT-GRVGKQCRERWYNHLKPDI 235 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G--------~~nW~~IA~~lp-gRt~~QCr~Rw~~~L~p~i 235 (440)
|-+||.|||++|++.|..+. ..=|..++..-+ .+|-..-|+||.+.|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 45799999999999997662 112999998877 8899999999999987643
No 40
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.67 E-value=0.012 Score=59.89 Aligned_cols=46 Identities=28% Similarity=0.653 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021 238 EAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKR 283 (440)
Q Consensus 238 ~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llr 283 (440)
..|+.+|+.+|+++....| ++|..||.+++.|+...||.||.++..
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 4699999999999999999 899999999999999999999977643
No 41
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.41 E-value=0.019 Score=46.15 Aligned_cols=47 Identities=30% Similarity=0.555 Sum_probs=38.7
Q ss_pred cCCCCHHHHHHHHHHHHHh-----CCC-----------ChHHHHHHh-----cCCccccccchhcccc
Q 044021 185 KGQWTPQEDRMLIRLVAQH-----GTK-----------KWSVIAKAM-----TGRVGKQCRERWYNHL 231 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~-----G~~-----------nW~~IA~~l-----pgRt~~QCr~Rw~~~L 231 (440)
+..||.+|.+.|+++|.+| +.. -|..|+..| +.|+..||+.+|.++.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999988 211 299999988 3699999999997754
No 42
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.28 E-value=0.0099 Score=60.55 Aligned_cols=48 Identities=19% Similarity=0.440 Sum_probs=44.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~ 232 (440)
--.|+..|+-+|+++....|.+||..||.+++.|+...|+++|.+++.
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 446999999999999999999999999999999999999999988765
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.99 E-value=0.07 Score=42.87 Aligned_cols=50 Identities=34% Similarity=0.557 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC----C-------------chHHHHHhc-----CCCCHHHHHHHHHHhhHHHh
Q 044021 237 KEAWSEEEDMILIQAHKEVG----N-------------RWAEIARRL-----IGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G----~-------------kW~~IAk~l-----~gRT~~qcr~Rw~~llrr~~ 286 (440)
+..||.+|...|++++.+|. + .|..|+..| +.||..+|+.+|..+.....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K 73 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK 73 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 45799999999999998863 1 299999876 25999999999998876643
No 44
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=94.51 E-value=0.022 Score=53.60 Aligned_cols=49 Identities=22% Similarity=0.519 Sum_probs=39.6
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCC------hHHHHHHhcCCccccccchhccccc
Q 044021 183 IIKGQWTPQEDRMLIRLVAQHGTKK------WSVIAKAMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 183 ikKG~WT~EED~~Ll~lV~k~G~~n------W~~IA~~lpgRt~~QCr~Rw~~~L~ 232 (440)
.++..||.|||.+|.+.|-+|+... ...++..| +|++.+|..||..+++
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr 57 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR 57 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence 3577899999999999999885432 56666777 8999999999977665
No 45
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=94.25 E-value=0.1 Score=46.40 Aligned_cols=52 Identities=27% Similarity=0.400 Sum_probs=41.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----chHHHHH------------hcCCCCHHHHHHHHHHhhHHH
Q 044021 234 DIKKEAWSEEEDMILIQAHKEVGN----RWAEIAR------------RLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 234 ~ikk~~WT~EED~~Ll~lv~k~G~----kW~~IAk------------~l~gRT~~qcr~Rw~~llrr~ 285 (440)
..++..||++||.-|+-.+.+||- .|..|-. .+..||+..|..|.+.+++--
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999995 6999876 245799999999999988754
No 46
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=91.09 E-value=0.68 Score=38.17 Aligned_cols=46 Identities=30% Similarity=0.622 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHh---CC----------chHHHHHhcC-----CCCHHHHHHHHHHhhHH
Q 044021 239 AWSEEEDMILIQAHKEV---GN----------RWAEIARRLI-----GRTENTIKNHWNATKRR 284 (440)
Q Consensus 239 ~WT~EED~~Ll~lv~k~---G~----------kW~~IAk~l~-----gRT~~qcr~Rw~~llrr 284 (440)
.||+++++.|++++.+. |+ .|..|+..|. ..+..||++||..+.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 49999999999998653 21 2999998762 36889999999877654
No 47
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=90.54 E-value=1.2 Score=47.76 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021 236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQS 287 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~s 287 (440)
-...||.||--++-++...||..+.+|.+.||.|+-.++...|+...+.+..
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~ 237 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREY 237 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhH
Confidence 3568999999999999999999999999999999999999999887766543
No 48
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=90.32 E-value=0.52 Score=48.32 Aligned_cols=51 Identities=31% Similarity=0.606 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHh----------CCchHHHHHhcC----CCCHHHHHHHHHHhhHHHhh
Q 044021 237 KEAWSEEEDMILIQAHKEV----------GNRWAEIARRLI----GRTENTIKNHWNATKRRQQS 287 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~----------G~kW~~IAk~l~----gRT~~qcr~Rw~~llrr~~s 287 (440)
...|+.+|-..||++..+. +.-|..||+.+. -||+.+|+.||..+.++-.+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999998643 234999999652 49999999999998877544
No 49
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=88.61 E-value=0.7 Score=48.44 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 238 EAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 238 ~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
.+||.+|-+++..++..+|..+..||..||.|...||+.+|..--|+
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence 47999999999999999999999999999999999999999765444
No 50
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=88.23 E-value=0.46 Score=42.20 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=37.0
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCC---CChHHHHHHh------------cCCccccccchhcc
Q 044021 182 NIIKGQWTPQEDRMLIRLVAQHGT---KKWSVIAKAM------------TGRVGKQCRERWYN 229 (440)
Q Consensus 182 ~ikKG~WT~EED~~Ll~lV~k~G~---~nW~~IA~~l------------pgRt~~QCr~Rw~~ 229 (440)
+.++..||.+||.-|+-.+.+||. +.|..|...+ ..||+..+..|-..
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~t 108 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNT 108 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHH
Confidence 667789999999999999999999 7899998865 24777777776644
No 51
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=87.97 E-value=0.44 Score=49.91 Aligned_cols=44 Identities=20% Similarity=0.417 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021 186 GQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH 230 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~ 230 (440)
-+||.+|-+++.++....|.. +..||..+|.|..+|++.+|.+-
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtd-F~LIs~lfP~R~RkqIKaKfi~E 409 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTD-FSLISSLFPNRERKQIKAKFIKE 409 (507)
T ss_pred CcccHHHHHHHHHHHHHhcch-HHHHHHhcCchhHHHHHHHHHHH
Confidence 489999999999999999987 99999999999999999998663
No 52
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=87.44 E-value=0.46 Score=48.71 Aligned_cols=47 Identities=30% Similarity=0.533 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHHh------C---CCChHHHHHHh----cCCccccccchhccccc
Q 044021 186 GQWTPQEDRMLIRLVAQH------G---TKKWSVIAKAM----TGRVGKQCRERWYNHLK 232 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~------G---~~nW~~IA~~l----pgRt~~QCr~Rw~~~L~ 232 (440)
..|+.+|...|+++.... + ..-|..||..+ .-|++.||+.+|.++..
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k 114 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKK 114 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 579999999999998654 1 11399999966 45999999999977643
No 53
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=86.45 E-value=0.54 Score=49.42 Aligned_cols=51 Identities=27% Similarity=0.384 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHh-----cCC-CCHHHHHHHHHHhhHHHhh
Q 044021 237 KEAWSEEEDMILIQAHKEVGNRWAEIARR-----LIG-RTENTIKNHWNATKRRQQS 287 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~-----l~g-RT~~qcr~Rw~~llrr~~s 287 (440)
-..||.+|-.-|.++++.|.-+|-.|+.+ ++. ||-..++.||+...|...+
T Consensus 130 dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~k 186 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLK 186 (445)
T ss_pred cccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999987 554 9999999999988776543
No 54
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=84.48 E-value=1.2 Score=36.70 Aligned_cols=43 Identities=30% Similarity=0.752 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------ChHHHHHHhc-----CCccccccchhcc
Q 044021 187 QWTPQEDRMLIRLVAQH---GTK---------KWSVIAKAMT-----GRVGKQCRERWYN 229 (440)
Q Consensus 187 ~WT~EED~~Ll~lV~k~---G~~---------nW~~IA~~lp-----gRt~~QCr~Rw~~ 229 (440)
.||+++++.|++++... |.. .|..|+..|. ..+..||+.||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999998655 222 2999999883 2456788888854
No 55
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=83.19 E-value=1.7 Score=36.26 Aligned_cols=31 Identities=39% Similarity=0.753 Sum_probs=18.9
Q ss_pred CCCCcCCCCHHHHHHH--------HHHHHHhCCCChHHHHHH
Q 044021 181 NNIIKGQWTPQEDRML--------IRLVAQHGTKKWSVIAKA 214 (440)
Q Consensus 181 p~ikKG~WT~EED~~L--------l~lV~k~G~~nW~~IA~~ 214 (440)
|.-..|-||+|+|+.| .+++++|| |..|+..
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~R 81 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIERR 81 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHHH
Confidence 5567899999999999 56667777 6666654
No 56
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=82.70 E-value=3.5 Score=30.46 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 242 ~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
+++++.++.++-..|-.|.+||..+ |.|...++.+....+++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~ 53 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK 53 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence 4677888888888999999999999 99999999998766543
No 57
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=77.01 E-value=7.9 Score=28.10 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHh
Q 044021 243 EEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNAT 281 (440)
Q Consensus 243 EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~l 281 (440)
+=|.+|+.++.+-|. .|..||+.+ |=|...|..|++.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 458899999998885 599999999 99999999999765
No 58
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=76.20 E-value=1.4 Score=46.45 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHH-----hcC-Cccccccchhcccc
Q 044021 186 GQWTPQEDRMLIRLVAQHGTKKWSVIAKA-----MTG-RVGKQCRERWYNHL 231 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~~-----lpg-Rt~~QCr~Rw~~~L 231 (440)
..||.||.+.|..++++|.-+ |-.||.. .+. ||....++||+.+.
T Consensus 131 n~WskeETD~LF~lck~fDLR-f~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDLR-FFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred ccccHHHHHHHHHHHHhcCee-EEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 579999999999999999987 9999986 555 99999999997654
No 59
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=73.47 E-value=4.7 Score=44.72 Aligned_cols=50 Identities=22% Similarity=0.518 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHH----------HhcCCCCHHHHHHHHHHhhHHH
Q 044021 236 KKEAWSEEEDMILIQAHKEVGNRWAEIA----------RRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G~kW~~IA----------k~l~gRT~~qcr~Rw~~llrr~ 285 (440)
.|..||-+|...+..+++++|..+.+|- ....-+|..|+|.+|+.++++-
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m 146 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRM 146 (782)
T ss_pred cccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHH
Confidence 3778999999999999999999999982 2344578899999999888774
No 60
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=72.75 E-value=7.2 Score=35.39 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 242 EEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 242 ~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
.+-|.+|+.++.+-|. .|+.||+.+ |-|...|+.|++.+.....
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~Gv 52 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGI 52 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 3579999999999884 699999999 9999999999998877653
No 61
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=72.23 E-value=3 Score=47.18 Aligned_cols=42 Identities=21% Similarity=0.529 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhc
Q 044021 186 GQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWY 228 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~ 228 (440)
..||+.|-.++-+++..|..+ +..|++.++++|..||-+-|+
T Consensus 620 d~WTp~E~~lF~kA~y~~~KD-F~~v~km~~~KtVaqCVeyYY 661 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSKD-FIFVQKMVKSKTVAQCVEYYY 661 (907)
T ss_pred ccccHHHHHHHHHHHHHhccc-HHHHHHHhccccHHHHHHHHH
Confidence 579999999999999999865 999999999999999998774
No 62
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=71.44 E-value=19 Score=38.07 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=70.2
Q ss_pred ccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHH
Q 044021 170 PVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILI 249 (440)
Q Consensus 170 ~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll 249 (440)
-+++.|+..--|.+.-|.=.++-++.|..||+-.= . -.+--..+ |+ +++--.-.-..|+++|-+.+-
T Consensus 223 ~v~~~~~~~~~p~~P~gt~vkDnEqAL~~Lvkcnf-D-teeAlrr~----------rf-nvk~~rd~l~~wsEeEcr~FE 289 (445)
T KOG4329|consen 223 AVVRLRKEHDQPCPPEGTEVKDNEQALYELVKCNF-D-TEEALRRL----------RF-NVKTVRDDLSGWSEEECRNFE 289 (445)
T ss_pred HHHhhhcccCCCCCCccccccccHHHHHHHHHcCC-c-HHHHHHhc----------CC-cceecccccccCCHHHHHHHH
Confidence 34567777788888888888899999998886432 1 22221211 22 121111123579999999999
Q ss_pred HHHHHhCCchHHHHH-hcCCCCHHHHHHHHHHh
Q 044021 250 QAHKEVGNRWAEIAR-RLIGRTENTIKNHWNAT 281 (440)
Q Consensus 250 ~lv~k~G~kW~~IAk-~l~gRT~~qcr~Rw~~l 281 (440)
+.++.||+.+..|.+ .++.|+--.|-.-|+..
T Consensus 290 egl~~yGKDF~lIr~nkvrtRsvgElVeyYYlW 322 (445)
T KOG4329|consen 290 EGLELYGKDFHLIRANKVRTRSVGELVEYYYLW 322 (445)
T ss_pred HHHHHhcccHHHHHhcccccchHHHHHHHHHHh
Confidence 999999999999966 57899999998877553
No 63
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=70.69 E-value=4.3 Score=29.50 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcc
Q 044021 191 QEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYN 229 (440)
Q Consensus 191 EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~ 229 (440)
+=|.+|+.+...-|...|..||+.+ |=+...|..|+.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHH
Confidence 4588899999999988999999999 8999999999864
No 64
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=69.96 E-value=35 Score=39.08 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHh
Q 044021 237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNAT 281 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~l 281 (440)
...||+.|-.++-.++-.|.+.+-.|++.++++|-.+|-..|+..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtW 663 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTW 663 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHH
Confidence 358999999999999999999999999999999999998876544
No 65
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=69.39 E-value=8.7 Score=35.29 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 242 EEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 242 ~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
.+-|.+||.++.+-|. .|+.||+.+ |-|...|+.|++.+.+...
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 5678999999988884 699999999 9999999999999887754
No 66
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=68.69 E-value=20 Score=38.81 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 238 EAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 238 ~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
..||.++-..++..+++||.....|+-.+...+=-+.++-+...-||+.
T Consensus 370 ~~~~T~~~la~v~~I~~~~~~~~pl~wrik~t~cmee~e~l~~~~Rr~m 418 (534)
T KOG1194|consen 370 RCFDTPAALALIDNIKRKHHMCVPLVWRVKQTKCMEENEILNEEARRQM 418 (534)
T ss_pred cccCcHHHHHHHHHHHHhccCcchhhhHhcCcchhhHHHHHHHHHHHHH
Confidence 4699999999999999999998888888888888888888888777764
No 67
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=67.16 E-value=21 Score=26.06 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+++..++.+.--.|-.+..||..+ |-|...++.+....+++.
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~kL 48 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKKL 48 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHHh
Confidence 456666666665567899999999 899999999988777654
No 68
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=66.25 E-value=20 Score=37.11 Aligned_cols=50 Identities=32% Similarity=0.477 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHh-CC---chHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 237 KEAWSEEEDMILIQAHKEV-GN---RWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~-G~---kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
-..||.-|.+.|++++... |. .-.+|++.++||+..+|++--+.++.|..
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rva 74 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRVA 74 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHHH
Confidence 4579999999999998765 43 36789999999999999998888776654
No 69
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=64.48 E-value=4.2 Score=33.86 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=10.1
Q ss_pred CCCCCCCCCHHHHHHHH
Q 044021 233 PDIKKEAWSEEEDMILI 249 (440)
Q Consensus 233 p~ikk~~WT~EED~~Ll 249 (440)
|....|.||+++|..|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 55567899999999995
No 70
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=64.17 E-value=6.6 Score=35.61 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCC
Q 044021 190 PQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIK 236 (440)
Q Consensus 190 ~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ik 236 (440)
.+-|.+|+.+.++-|...|..||+.+ |-+...|+.|+.+....++-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 35799999999999988999999999 99999999999888776543
No 71
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=63.84 E-value=12 Score=36.22 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHHHhcC---CCCHHHHHHHHHHhhH
Q 044021 239 AWSEEEDMILIQAHKEVGNRWAEIARRLI---GRTENTIKNHWNATKR 283 (440)
Q Consensus 239 ~WT~EED~~Ll~lv~k~G~kW~~IAk~l~---gRT~~qcr~Rw~~llr 283 (440)
.|++++|..|+.+|. .|+.-..|++-+. .-|-..+..||+.++-
T Consensus 1 rW~~~DDl~Li~av~-~~~~L~~v~~gvkFS~~fT~~Ei~~RW~~lly 47 (199)
T PF13325_consen 1 RWKPEDDLLLINAVE-QTNDLESVHLGVKFSCKFTLQEIEERWYALLY 47 (199)
T ss_pred CCCchhhHHHHHHHH-HhcCHHHHHccCCcCCcCcHHHHHHHHHHHHc
Confidence 599999999999995 4677777776543 5789999999998874
No 72
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=60.56 E-value=19 Score=30.78 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHHh----CC----chHHHHHhcC-----CCCHHHHHHHHHHhhHHH
Q 044021 237 KEAWSEEEDMILIQAHKEV----GN----RWAEIARRLI-----GRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~----G~----kW~~IAk~l~-----gRT~~qcr~Rw~~llrr~ 285 (440)
...||++++..||+++..| |. .|..+-..+. .=+.+|+.++.+.+.+|-
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 4579999999999999877 62 4555444332 237778877776666553
No 73
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=58.80 E-value=63 Score=33.65 Aligned_cols=87 Identities=22% Similarity=0.426 Sum_probs=62.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHH-h----
Q 044021 184 IKGQWTPQEDRMLIRLVAQHGTK---KWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKE-V---- 255 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~G~~---nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k-~---- 255 (440)
.-..||.-|...|+++.+..... +-.+|++.++||+..++++- .+.|+ ++.+.+++++ |
T Consensus 20 gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~f-l~~LK------------~rvareaiqkv~~~g~ 86 (344)
T PF11035_consen 20 GPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDF-LQQLK------------GRVAREAIQKVHPGGL 86 (344)
T ss_pred CcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHH-HHHHH------------HHHHHHHHHHhccccc
Confidence 34589999999999999866322 46788999999999998873 34443 2344445444 2
Q ss_pred -CC------------chHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021 256 -GN------------RWAEIARRLIGRTENTIKNHWNATKR 283 (440)
Q Consensus 256 -G~------------kW~~IAk~l~gRT~~qcr~Rw~~llr 283 (440)
|. -|..+|..+.|.-...+-.-|-.++-
T Consensus 87 ~~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~ 127 (344)
T PF11035_consen 87 KGPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLT 127 (344)
T ss_pred ccccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 21 19999999999999888888866554
No 74
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=57.85 E-value=8.1 Score=35.49 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC
Q 044021 190 PQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI 235 (440)
Q Consensus 190 ~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i 235 (440)
.+-|.+|+.+.++-|.-.|..||+.+ |-+...|+.|++++.+.++
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 56789999999999988999999999 9999999999988877664
No 75
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=56.32 E-value=28 Score=30.22 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+++..++.+.-..|-.+.+||+.+ |.+...++.+....+++.
T Consensus 116 ~~~r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~L 157 (161)
T TIGR02985 116 EQCRKIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALKEL 157 (161)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 455666666556688999999999 999999999998876654
No 76
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=55.57 E-value=34 Score=36.36 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----------------chHHHHHhc-----CCCCHHHHHHHHHHhhHHHhhhhhhhhH
Q 044021 236 KKEAWSEEEDMILIQAHKEVGN----------------RWAEIARRL-----IGRTENTIKNHWNATKRRQQSKRNTRKQ 294 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G~----------------kW~~IAk~l-----~gRT~~qcr~Rw~~llrr~~sk~k~~~~ 294 (440)
--|.|+++=|+.+.++++.|.. +=..||+++ ..||..|+-.|-+.+.||+.++-..+.+
T Consensus 75 aegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~reiq~klk 154 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQAKLK 154 (455)
T ss_pred cccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4578999999999999987742 357788875 2599999999999999998876555444
No 77
>smart00595 MADF subfamily of SANT domain.
Probab=53.49 E-value=23 Score=28.69 Aligned_cols=26 Identities=35% Similarity=0.734 Sum_probs=22.2
Q ss_pred chHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 258 RWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 258 kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
.|..||..| |-+...|+.+|+.+..+
T Consensus 29 aW~~Ia~~l-~~~~~~~~~kw~~LR~~ 54 (89)
T smart00595 29 AWEEIAEEL-GLSVEECKKRWKNLRDR 54 (89)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 499999999 45999999999887544
No 78
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=52.06 E-value=13 Score=44.12 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=30.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh
Q 044021 181 NNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM 215 (440)
Q Consensus 181 p~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l 215 (440)
+..++..||.|||..|+-.+.+||.++|..|...+
T Consensus 922 ~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i 956 (1033)
T PLN03142 922 GQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAF 956 (1033)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34455569999999999999999999999998766
No 79
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=49.40 E-value=22 Score=33.15 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHH
Q 044021 239 AWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNA 280 (440)
Q Consensus 239 ~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~ 280 (440)
.||+|+.+.|.++. .-|-.=++||+.|+|.|.++|.-+.+.
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhhc
Confidence 59999999998888 558889999999988999999877654
No 80
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=48.44 E-value=40 Score=27.67 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCC--------chHHHHHhcCC---CC--HHHHHHHHHHhhH
Q 044021 246 MILIQAHKEVGN--------RWAEIARRLIG---RT--ENTIKNHWNATKR 283 (440)
Q Consensus 246 ~~Ll~lv~k~G~--------kW~~IAk~l~g---RT--~~qcr~Rw~~llr 283 (440)
..|..+|.+.|+ +|..|++.|+- -+ ..+++..|..++.
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 39 YKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 467888888885 59999999842 22 3678888887664
No 81
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=45.98 E-value=48 Score=27.67 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 243 EEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 243 EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+.|.+|+.++.+.|. .|+.||+.+ |-+...|+.|.+.+.....
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~ 46 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGV 46 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 578899999998884 699999999 9999999999998877654
No 82
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=45.61 E-value=19 Score=40.02 Aligned_cols=49 Identities=20% Similarity=0.417 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
..++||.+|-.+...+....|...+.|+..+++|+..|+|.+|..--+|
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r 456 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKR 456 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhc
Confidence 4568999999999999999999999999999999999999998654443
No 83
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=43.12 E-value=56 Score=27.42 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 246 MILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 246 ~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
..++.++-..|..+..||+.+ |-+...++.+....+++.
T Consensus 116 ~~ii~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~kl 154 (158)
T TIGR02937 116 REVLVLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKKL 154 (158)
T ss_pred HHHHhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 334444444678899999999 779999999888766553
No 84
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=42.76 E-value=58 Score=26.99 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCC--------chHHHHHhcCC-----CCHHHHHHHHHHhhHH
Q 044021 246 MILIQAHKEVGN--------RWAEIARRLIG-----RTENTIKNHWNATKRR 284 (440)
Q Consensus 246 ~~Ll~lv~k~G~--------kW~~IAk~l~g-----RT~~qcr~Rw~~llrr 284 (440)
.+|..+|.+.|+ .|..|++.|.- ....+++..|..++..
T Consensus 35 ~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 35 YRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 467788888885 59999999842 2357788888877654
No 85
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=42.42 E-value=20 Score=37.92 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHH-HHhcCCccccccchhcc
Q 044021 186 GQWTPQEDRMLIRLVAQHGTKKWSVIA-KAMTGRVGKQCRERWYN 229 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~G~~nW~~IA-~~lpgRt~~QCr~Rw~~ 229 (440)
-.||.+|-..+.+.++.||.. +..|. ..++.|+...|-+-|+.
T Consensus 278 ~~wsEeEcr~FEegl~~yGKD-F~lIr~nkvrtRsvgElVeyYYl 321 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKD-FHLIRANKVRTRSVGELVEYYYL 321 (445)
T ss_pred ccCCHHHHHHHHHHHHHhccc-HHHHHhcccccchHHHHHHHHHH
Confidence 379999999999999999975 99994 57899999999887643
No 86
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=42.14 E-value=68 Score=22.88 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHW 278 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw 278 (440)
=|...|.+++..+|++.+..|+.| |=+...+..|-
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L-gisr~tL~~kl 39 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL-GISRRTLYRKL 39 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH-TS-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHHH
Confidence 367789999999999999999999 66666665554
No 87
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=40.76 E-value=28 Score=32.54 Aligned_cols=41 Identities=22% Similarity=0.201 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcc
Q 044021 187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYN 229 (440)
Q Consensus 187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~ 229 (440)
.||.|+.++|.+|...--. =.+||..|.+.|...+.-+-++
T Consensus 2 ~Wtde~~~~L~~lw~~G~S--asqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLWAEGLS--ASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHHHcCCC--HHHHHHHhCCcchhhhhhhhhc
Confidence 4999999999999855433 5999999976777766655544
No 88
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=40.49 E-value=14 Score=41.01 Aligned_cols=48 Identities=17% Similarity=0.448 Sum_probs=43.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcc
Q 044021 181 NNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYN 229 (440)
Q Consensus 181 p~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~ 229 (440)
+....++||.+|-++..++....|.. ...||..+++|+.+|++..|..
T Consensus 405 k~~~~~~w~~se~e~fyka~~~~gs~-~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 405 KKLETDKWDASETELFYKALSERGSD-FSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred CccccCcccchhhHHhhhHHhhhccc-ccccccccccccHHHHHHHHhh
Confidence 44567899999999999999999987 9999999999999999998854
No 89
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=39.72 E-value=68 Score=28.45 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 245 DMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 245 D~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+..++.+....|-.+..||+.+ |.+...++.+....+++.
T Consensus 133 ~r~vl~l~~~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~L 172 (182)
T PRK09652 133 LRTAITLREIEGLSYEEIAEIM-GCPIGTVRSRIFRAREAL 172 (182)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3444555555678899999999 899999998887655544
No 90
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=38.83 E-value=43 Score=26.20 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=22.1
Q ss_pred chHHHHHhcC-CCCHHHHHHHHHHhhHH
Q 044021 258 RWAEIARRLI-GRTENTIKNHWNATKRR 284 (440)
Q Consensus 258 kW~~IAk~l~-gRT~~qcr~Rw~~llrr 284 (440)
.|..||..|+ +-+...|+.||+.+...
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~ 55 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLRDR 55 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 4999999995 36788999999886543
No 91
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=36.76 E-value=1e+02 Score=21.15 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhh
Q 044021 240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATK 282 (440)
Q Consensus 240 WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~ll 282 (440)
++++ +..++.++-.-|-.+..||..+ |-+...|+.+.....
T Consensus 11 l~~~-~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~~ 51 (55)
T cd06171 11 LPER-EREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRAL 51 (55)
T ss_pred CCHH-HHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 3444 4555555556677899999998 777777776665543
No 92
>PLN03162 golden-2 like transcription factor; Provisional
Probab=36.66 E-value=1.5e+02 Score=31.64 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCc---hHHHHHhc--CCCCHHHHHHHHHHhh
Q 044021 237 KEAWSEEEDMILIQAHKEVGNR---WAEIARRL--IGRTENTIKNHWNATK 282 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~k---W~~IAk~l--~gRT~~qcr~Rw~~ll 282 (440)
|-.||+|=.++++++|.+.|.. =+.|-+.| +|=|..+|+.|.+++.
T Consensus 237 RLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYR 287 (526)
T PLN03162 237 KVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYR 287 (526)
T ss_pred cccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 3579999999999999999942 56777776 6999999999987654
No 93
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=36.55 E-value=48 Score=38.44 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCcccccc------------------------------------------
Q 044021 187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCR------------------------------------------ 224 (440)
Q Consensus 187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr------------------------------------------ 224 (440)
.||+.+=...+.+..+||..+=..||..+.+ +...+.
T Consensus 797 ~w~k~df~~fi~a~eKygr~di~~ia~~~e~-~~eev~~y~rvfwer~~el~d~ek~~~~ie~~e~~i~r~~~~~~~ld~ 875 (971)
T KOG0385|consen 797 NWTKRDFNQFIKANEKYGRDDIENIAAEVEG-TPEEVGEYARVFWERLEELSDIEKIIYQIERGEKRIQRGDSIKKALDD 875 (971)
T ss_pred chhhhhHHHHHHHhhccCcchhhhhHHhhcC-CHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHhhhhHHHHHHHHHhh
Confidence 5899999999999999998887777777754 221111
Q ss_pred --chhcc----cc-cCCCCCCCCCHHHHHHHHHHHHHhCC----chHHHHHh------------cCCCCHHHHHHHHHHh
Q 044021 225 --ERWYN----HL-KPDIKKEAWSEEEDMILIQAHKEVGN----RWAEIARR------------LIGRTENTIKNHWNAT 281 (440)
Q Consensus 225 --~Rw~~----~L-~p~ikk~~WT~EED~~Ll~lv~k~G~----kW~~IAk~------------l~gRT~~qcr~Rw~~l 281 (440)
.||++ .+ .+..++...|.+||.-|+.++.++|- .|..+-.. +..||...+..|++.+
T Consensus 876 k~~~~k~p~~l~i~~~~nk~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frfdw~~~sRt~~el~Rr~ntl 955 (971)
T KOG0385|consen 876 KIARYKAPHQLRIQYGTNKGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRFDWFIKSRTAMELQRRCNTL 955 (971)
T ss_pred hHhhhcCchheeeeeccccCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCcccccceeeehhhHHHHHhcCCee
Confidence 02222 11 11125668999999999999999993 26655432 2347776666666655
Q ss_pred h
Q 044021 282 K 282 (440)
Q Consensus 282 l 282 (440)
+
T Consensus 956 i 956 (971)
T KOG0385|consen 956 I 956 (971)
T ss_pred E
Confidence 4
No 94
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=36.31 E-value=54 Score=27.38 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCchHHHHHhcCCCCHHHH
Q 044021 245 DMILIQAHKEVGNRWAEIARRLIGRTENTI 274 (440)
Q Consensus 245 D~~Ll~lv~k~G~kW~~IAk~l~gRT~~qc 274 (440)
|+.|..+....|..|..+|+.| |=|..+|
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I 30 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDI 30 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 5678889999999999999998 5554444
No 95
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=35.99 E-value=43 Score=37.56 Aligned_cols=47 Identities=23% Similarity=0.457 Sum_probs=35.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-cC---------Cccccccchhccccc
Q 044021 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM-TG---------RVGKQCRERWYNHLK 232 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l-pg---------Rt~~QCr~Rw~~~L~ 232 (440)
|..||-.|.+.+..+++++|.. +..|-..+ .. ++-.|+|.+|++.+.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKd-Fe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~ 144 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKD-FEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVR 144 (782)
T ss_pred ccccchhhHHHHHHHHHHhccc-HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHH
Confidence 6689999999999999999975 88884433 22 345678888876554
No 96
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=35.77 E-value=64 Score=28.45 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021 242 EEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQQS 287 (440)
Q Consensus 242 ~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~~s 287 (440)
.+-|.+||+++++-|. .++.||+.+ |-|...|++|-+.+.+...-
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~GiI 52 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEGVI 52 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCce
Confidence 4668899999988885 599999999 89999999999888877643
No 97
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=35.54 E-value=67 Score=27.49 Aligned_cols=68 Identities=16% Similarity=0.349 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHh----CC---CChHHHHHHhcCC-----cccc-------ccchhcccccCCCCCC---CCCHH
Q 044021 186 GQWTPQEDRMLIRLVAQH----GT---KKWSVIAKAMTGR-----VGKQ-------CRERWYNHLKPDIKKE---AWSEE 243 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~----G~---~nW~~IA~~lpgR-----t~~Q-------Cr~Rw~~~L~p~ikk~---~WT~E 243 (440)
..||+|++-.|++++..| |. .+|..+...+.+. +..| .+.||.+.... .+.| .++..
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k-~~~g~~~~~~~~ 83 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK-SKNGKDPSFSKP 83 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh-cccCcCCCCCCH
Confidence 469999999999999877 52 2566666555332 2223 33355554443 2222 57777
Q ss_pred HHHHHHHHHHH
Q 044021 244 EDMILIQAHKE 254 (440)
Q Consensus 244 ED~~Ll~lv~k 254 (440)
-|+.+.++.++
T Consensus 84 hd~~~f~Lsk~ 94 (98)
T PF04504_consen 84 HDRRLFELSKK 94 (98)
T ss_pred hHHHHHHHHHH
Confidence 77777776654
No 98
>smart00595 MADF subfamily of SANT domain.
Probab=35.34 E-value=15 Score=29.70 Aligned_cols=22 Identities=36% Similarity=0.909 Sum_probs=19.1
Q ss_pred hHHHHHHhcCCccccccchhccc
Q 044021 208 WSVIAKAMTGRVGKQCRERWYNH 230 (440)
Q Consensus 208 W~~IA~~lpgRt~~QCr~Rw~~~ 230 (440)
|..||..| |-++.+|+.+|.++
T Consensus 30 W~~Ia~~l-~~~~~~~~~kw~~L 51 (89)
T smart00595 30 WEEIAEEL-GLSVEECKKRWKNL 51 (89)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHH
Confidence 99999999 55999999999664
No 99
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=34.74 E-value=90 Score=28.97 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
+...++++..-.|-.+.+||..+ |-|...++.+|.....+
T Consensus 139 ~~~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR~~ 178 (185)
T PF07638_consen 139 RQRRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRARAW 178 (185)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 33444455445677899999999 99999999999876543
No 100
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=34.53 E-value=88 Score=27.66 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=27.8
Q ss_pred HHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 248 LIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 248 Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++.+....|-.+..||..| |-|...|++++....++.
T Consensus 133 i~~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~l 169 (179)
T PRK11924 133 VFLLRYVEGLSYREIAEIL-GVPVGTVKSRLRRARQLL 169 (179)
T ss_pred HhhHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3334444577899999999 899999999987765554
No 101
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=33.96 E-value=44 Score=27.88 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC
Q 044021 191 QEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI 235 (440)
Q Consensus 191 EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i 235 (440)
+.|.+++.++.+.+...|..||+.+ |-+...|+.|..+....++
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~ 46 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGV 46 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 5688899999998877899999999 8999999999877766554
No 102
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=33.74 E-value=94 Score=28.77 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++++.++.+.-..|-...+||..+ |-+...++.|+...+++.
T Consensus 137 ~~~r~i~~l~~~~g~s~~EIA~~l-g~s~~tV~~rl~rar~~L 178 (192)
T PRK09643 137 VEQRAALVAVDMQGYSVADAARML-GVAEGTVKSRCARGRARL 178 (192)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455666666667788999999999 999999999986655443
No 103
>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]
Probab=33.65 E-value=15 Score=44.71 Aligned_cols=43 Identities=21% Similarity=0.423 Sum_probs=34.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchh
Q 044021 184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERW 227 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw 227 (440)
+...|+++|-+....-...|-. +...|+..+..++..+|..-|
T Consensus 224 ~~n~Ws~~Ek~~fk~rf~~H~k-nf~~~as~~erkSv~d~vlfy 266 (1672)
T KOG1878|consen 224 RMNEWSPEEKELFKSRFAQHVK-NFGLIASFFERKSVSDCVLFY 266 (1672)
T ss_pred HhhhccccccccccchhhhcCc-chhhhhhhhcccchhhceeee
Confidence 3457999998888877777754 589999999888888887755
No 104
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=33.15 E-value=57 Score=39.49 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=45.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHH--HhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHh-CCchHH
Q 044021 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAK--AMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEV-GNRWAE 261 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~--~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~-G~kW~~ 261 (440)
---|..+||..|+-.|-+||.++|..|-. .| +=+.+ ..+...+-...|=...-..|+.++..+ +.+|..
T Consensus 1133 ~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L-~l~dK-------i~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~~~ 1204 (1373)
T KOG0384|consen 1133 DCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDL-GLTDK-------IFLVETVPQAKHLQRRADYLLSLLRKHDKGNTPK 1204 (1373)
T ss_pred ccCCCchhhhhHhhhhhhcccccHHHhccCccc-cchhh-------hcccccCCchHHHHHHHHHHHHHHhhcccCCCch
Confidence 45799999999999999999999999853 11 11111 111111334556666666777776666 555655
Q ss_pred HHH
Q 044021 262 IAR 264 (440)
Q Consensus 262 IAk 264 (440)
..+
T Consensus 1205 ~~~ 1207 (1373)
T KOG0384|consen 1205 KLK 1207 (1373)
T ss_pred hhh
Confidence 443
No 105
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=32.61 E-value=37 Score=30.00 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCC
Q 044021 190 PQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIK 236 (440)
Q Consensus 190 ~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ik 236 (440)
.+-|.+++++.++-+...+..||+.+ |-+...|+.|-.+..+.++-
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~GiI 52 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEGVI 52 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCce
Confidence 35688999999999988899999999 89999999998887766543
No 106
>PRK04217 hypothetical protein; Provisional
Probab=31.28 E-value=1.5e+02 Score=26.19 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 239 AWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 239 ~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
.-|++| ..++.++...|-...+||+.+ |-+...++.+++...+..
T Consensus 42 ~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArkkL 86 (110)
T PRK04217 42 FMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARKKV 86 (110)
T ss_pred cCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 355555 677788877888999999999 999999999998655443
No 107
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=30.25 E-value=95 Score=28.74 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHhcC----CCCHHHHHHHHHHhh
Q 044021 237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLI----GRTENTIKNHWNATK 282 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~----gRT~~qcr~Rw~~ll 282 (440)
...-|+.|..-|..++++||.++...++-.. -.|+.||+.+...+.
T Consensus 114 ~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 114 PRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred CCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 3456789999999999999999999997542 589999999887653
No 108
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=30.03 E-value=36 Score=24.98 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021 190 PQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH 230 (440)
Q Consensus 190 ~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~ 230 (440)
++++..++.+....|-. |.+||..+ |.+...++.+..+.
T Consensus 12 ~~~~r~i~~l~~~~g~s-~~eIa~~l-~~s~~~v~~~l~ra 50 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMS-YAEIAEIL-GISESTVKRRLRRA 50 (54)
T ss_dssp -HHHHHHHHHHHTS----HHHHHHHC-TS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC-HHHHHHHH-CcCHHHHHHHHHHH
Confidence 45666667776666755 99999999 89988888776543
No 109
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=29.85 E-value=1.1e+02 Score=27.47 Aligned_cols=41 Identities=15% Similarity=0.040 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++..++.+.--.|..+.+||..+ |-|...++++.....++.
T Consensus 140 ~~r~il~l~~~~~~s~~eIA~~l-gis~~~v~~~l~Rar~~L 180 (187)
T PRK09641 140 KYRTVIVLKYIEDLSLKEISEIL-DLPVGTVKTRIHRGREAL 180 (187)
T ss_pred HHHHHhhhHHhhCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34555555555678899999999 999999999987665544
No 110
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=29.05 E-value=1.2e+02 Score=33.25 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=46.3
Q ss_pred HHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHh-cCCCCHHHHHHHHH
Q 044021 209 SVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARR-LIGRTENTIKNHWN 279 (440)
Q Consensus 209 ~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~-l~gRT~~qcr~Rw~ 279 (440)
..|+-.+|---+.-||+. -..|+..|-.++-+++++||..+..|... ||=++-.+|-..|+
T Consensus 267 ~Ais~LVPlGGPvLCRDe----------mEEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYY 328 (693)
T KOG3554|consen 267 KAISYLVPLGGPVLCRDE----------MEEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYY 328 (693)
T ss_pred HHHHHhhcCCCceeehhh----------hhhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHH
Confidence 445555555555556553 24799999999999999999999999664 58888888877764
No 111
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=28.98 E-value=99 Score=27.95 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
++.+.++.+.-..|-...+||..+ |-|...|+++....+++..
T Consensus 141 ~~~r~v~~l~~~~~~s~~EIA~~l-gis~~tv~~~l~rar~~Lr 183 (190)
T TIGR02939 141 EDLRTAITLRELEGLSYEDIARIM-DCPVGTVRSRIFRAREAIA 183 (190)
T ss_pred HHHhhhhhhhhhcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 344455555555677899999999 8889999999877666543
No 112
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=28.45 E-value=1.3e+02 Score=26.93 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+++..++.+.--.|-...+||..+ |-|...+++|....+++..
T Consensus 122 ~~~r~i~~l~~~~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~Lr 164 (169)
T TIGR02954 122 DKYQTAIILRYYHDLTIKEIAEVM-NKPEGTVKTYLHRALKKLK 164 (169)
T ss_pred HHHhHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 344455555556677899999999 8899999999877665543
No 113
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=28.01 E-value=64 Score=28.36 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHHHHh
Q 044021 187 QWTPQEDRMLIRLVAQH 203 (440)
Q Consensus 187 ~WT~EED~~Ll~lV~k~ 203 (440)
++|++||-.|...|.+|
T Consensus 1 kfTA~dDY~Lc~~i~~~ 17 (105)
T PF09197_consen 1 KFTADDDYALCKAIKKQ 17 (105)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH
Confidence 48999999999999777
No 114
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=27.97 E-value=1.4e+02 Score=26.72 Aligned_cols=41 Identities=27% Similarity=0.228 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++..++.+..-.|-.-.+||..| |.+...|+.|....+++.
T Consensus 122 ~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 162 (173)
T PRK09645 122 EHRAVLVRSYYRGWSTAQIAADL-GIPEGTVKSRLHYALRAL 162 (173)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44455555556677899999999 999999999987665544
No 115
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=27.60 E-value=98 Score=25.82 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCchHHHHHhcCCCCHHH
Q 044021 245 DMILIQAHKEVGNRWAEIARRLIGRTENT 273 (440)
Q Consensus 245 D~~Ll~lv~k~G~kW~~IAk~l~gRT~~q 273 (440)
|..|.......|..|..+|+.| |=+...
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~d 31 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDE 31 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHH
Confidence 5678888899999999999998 444433
No 116
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=26.83 E-value=1.5e+02 Score=27.36 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
.+..++.+..-.|-....||..| |-+...++.|....+++..
T Consensus 135 ~~r~v~~l~~~~g~s~~EIA~~l-gis~~tvk~rl~Rar~~Lr 176 (188)
T TIGR02943 135 QTARVFMMREVLGFESDEICQEL-EISTSNCHVLLYRARLSLR 176 (188)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 44556666666678899999999 9999999999877665543
No 117
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=26.75 E-value=1.5e+02 Score=27.00 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 246 MILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 246 ~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+.++.++--.|....+||..| |-+...++.|....+++.
T Consensus 145 r~i~~l~~~~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~L 183 (189)
T PRK09648 145 REILILRVVVGLSAEETAEAV-GSTPGAVRVAQHRALARL 183 (189)
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 444444445577899999999 888999999887655543
No 118
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=26.44 E-value=1.4e+02 Score=27.37 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
++++.++.+..-.|-.+.+||..| |-+...++.|....+++
T Consensus 109 ~~~r~i~~l~~~~g~~~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (181)
T PRK09637 109 EKYAEALRLTELEGLSQKEIAEKL-GLSLSGAKSRVQRGRVK 149 (181)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 345666666667788999999999 89999999998665544
No 119
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=25.94 E-value=1.7e+02 Score=25.58 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++.+.++.+....|-...+||..| |-+...++.|....+++.
T Consensus 109 ~~~r~v~~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 150 (161)
T PRK09047 109 ARQREAFLLRYWEDMDVAETAAAM-GCSEGSVKTHCSRATHAL 150 (161)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344566666666778899999999 999999999987665554
No 120
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=25.87 E-value=1.5e+02 Score=27.25 Aligned_cols=41 Identities=2% Similarity=-0.006 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+.+.++.+..-.|-...+||..| |-+...|+.|....+++.
T Consensus 138 ~~R~v~~L~~~~g~s~~EIA~~l-gis~~tVk~~l~RAr~~L 178 (189)
T PRK12530 138 QQARVFMMREYLELSSEQICQEC-DISTSNLHVLLYRARLQL 178 (189)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 44555555555677899999999 999999999987655544
No 121
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=25.86 E-value=83 Score=25.72 Aligned_cols=28 Identities=32% Similarity=0.662 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCchHHHHHhcCCCCHHH
Q 044021 245 DMILIQAHKEVGNRWAEIARRLIGRTENT 273 (440)
Q Consensus 245 D~~Ll~lv~k~G~kW~~IAk~l~gRT~~q 273 (440)
|..|....+..|..|.++|+.| |=+...
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~d 31 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETD 31 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHH
Confidence 4567788889999999999999 444443
No 122
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=25.78 E-value=1.4e+02 Score=27.22 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+++.++.+..-.|-...+||..+ |-+...|++|+...+++.
T Consensus 142 ~~r~v~~l~~~~g~s~~eIA~~l-gis~~tv~~~l~Rar~~L 182 (193)
T PRK11923 142 DLRTALTLREFDGLSYEDIASVM-QCPVGTVRSRIFRAREAI 182 (193)
T ss_pred HHhHHHhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34555555555677899999999 889999999987766554
No 123
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=25.65 E-value=1.6e+02 Score=26.62 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+++..++.+.--.|....+||..| |-+...++.+....+++..
T Consensus 134 ~~~r~v~~l~~~~g~s~~eIA~~l-~is~~tV~~~l~ra~~~Lr 176 (184)
T PRK12512 134 PRQRDVVQSISVEGASIKETAAKL-SMSEGAVRVALHRGLAALA 176 (184)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 345566666656688899999999 9999999999877665543
No 124
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=25.57 E-value=1.7e+02 Score=25.72 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++.+.++.+....|-.-.+||..+ |-+...|++|....+++.
T Consensus 109 ~~~r~v~~l~~~~g~s~~EIA~~l-gis~~tV~~~l~Rar~~L 150 (160)
T PRK09642 109 ENYRDVVLAHYLEEKSYQEIALQE-KIEVKTVEMKLYRARKWI 150 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 455667777777888999999999 999999999987655443
No 125
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=25.00 E-value=96 Score=24.98 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCChHHHHHHhcC
Q 044021 193 DRMLIRLVAQHGTKKWSVIAKAMTG 217 (440)
Q Consensus 193 D~~Ll~lV~k~G~~nW~~IA~~lpg 217 (440)
+.+|.++|+.|| |...+..++=
T Consensus 12 e~il~~Lv~~yG---W~~L~~~i~i 33 (64)
T PF09905_consen 12 ETILTELVEHYG---WEELGERINI 33 (64)
T ss_dssp HHHHHHHHHHT----HHHHHHHTTS
T ss_pred HHHHHHHHHHhC---HHHHHhhccc
Confidence 578999999998 9999998843
No 126
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=24.84 E-value=1.6e+02 Score=26.52 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++++.++.+..-.|-...+||..+ |.+...|+.|...-+++.
T Consensus 122 ~~~r~v~~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~~ 163 (172)
T PRK12523 122 SKARAAFLYNRLDGMGHAEIAERL-GVSVSRVRQYLAQGLRQC 163 (172)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 355666666667788999999999 999999999987666554
No 127
>PRK01905 DNA-binding protein Fis; Provisional
Probab=24.67 E-value=1.8e+02 Score=23.43 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHH
Q 044021 242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHW 278 (440)
Q Consensus 242 ~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw 278 (440)
.-|...+.+++..+|+++++.|+.+ |=+...++.+.
T Consensus 36 ~~E~~~i~~aL~~~~gn~s~aAr~L-GIsrstL~rkl 71 (77)
T PRK01905 36 CVEKPLLEVVMEQAGGNQSLAAEYL-GINRNTLRKKL 71 (77)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHH
Confidence 4467789999999999999999999 55555554443
No 128
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=24.64 E-value=1.5e+02 Score=26.72 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+++.++.+..-.|....+||..+ |.+...++++....+++.
T Consensus 140 ~~r~v~~l~~~~g~s~~eIA~~l-gis~~~v~~~l~Rar~~L 180 (187)
T TIGR02948 140 KYRMVIVLKYMEDLSLKEISEIL-DLPVGTVKTRIHRGREAL 180 (187)
T ss_pred HHhHHhhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34444455445677899999999 889999999987665554
No 129
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=24.52 E-value=1.5e+02 Score=22.64 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNH 277 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~R 277 (440)
+.++-.+.+..+.|-.-.+||+.+ ||+.+.|++-
T Consensus 7 ~~Eqaqid~m~qlG~s~~~isr~i-~RSr~~Ir~y 40 (50)
T PF11427_consen 7 DAEQAQIDVMHQLGMSLREISRRI-GRSRTCIRRY 40 (50)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHH-T--HHHHHHH
T ss_pred HHHHHHHHHHHHhchhHHHHHHHh-CccHHHHHHH
Confidence 345666778889999999999999 9998877654
No 130
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=24.43 E-value=1.8e+02 Score=26.87 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+...++.+..-.|-...+||..| |-+...++.|....+++.
T Consensus 145 ~~r~v~~l~~~eg~s~~EIA~~l-gis~~tVk~rl~ra~~~L 185 (194)
T PRK12531 145 AQRDVLQAVYLEELPHQQVAEMF-DIPLGTVKSRLRLAVEKL 185 (194)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHh-CcCHHHHHHHHHHHHHHH
Confidence 34445555555677899999999 999999998876655543
No 131
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=24.14 E-value=1.8e+02 Score=26.53 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+.+.++.+..-.|-....||..| |-|...+++|+...+++.
T Consensus 135 ~~r~vl~l~~~~~~s~~eIA~~l-gis~~tV~~~l~Rar~~L 175 (189)
T PRK12515 135 AHREIIDLVYYHEKSVEEVGEIV-GIPESTVKTRMFYARKKL 175 (189)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34444555555677899999999 889999999987655443
No 132
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=23.50 E-value=1.9e+02 Score=25.15 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=22.9
Q ss_pred HhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 254 EVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 254 k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
-.|-...+||..+ |.+...|+.+-...+++.
T Consensus 120 ~~~~s~~EIA~~l-~is~~tV~~~~~ra~~~L 150 (154)
T PRK06759 120 FVGKTMGEIALET-EMTYYQVRWIYRQALEKM 150 (154)
T ss_pred hcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3456688888888 888888888876655543
No 133
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=23.42 E-value=2e+02 Score=25.42 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
.++.++.+.--.|-...+||+.| |.+...++.|-...+++.
T Consensus 126 ~~r~vl~l~~~~g~s~~eIA~~l-~is~~tv~~~l~ra~~~L 166 (170)
T TIGR02952 126 KQQHVIALRFGQNLPIAEVARIL-GKTEGAVKILQFRAIKKL 166 (170)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34555555555677899999999 899999998886665543
No 134
>PRK12524 RNA polymerase sigma factor; Provisional
Probab=22.33 E-value=2e+02 Score=26.60 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++.+.++.+....|-.+.+||+.| |-+...|++|....+++.
T Consensus 139 ~~~r~i~~L~~~~g~s~~eIA~~l-gis~~tV~~~l~Ra~~~L 180 (196)
T PRK12524 139 ERQRQAVVLRHIEGLSNPEIAEVM-EIGVEAVESLTARGKRAL 180 (196)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344555556556778899999999 889999988876655543
No 135
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=22.28 E-value=2.1e+02 Score=25.99 Aligned_cols=42 Identities=14% Similarity=-0.014 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++.+.++.+....|-...+||..| |-+...++.|....+++-
T Consensus 130 ~~~R~v~~L~~~~g~s~~EIA~~l-gis~~tVk~~l~rAl~~~ 171 (178)
T PRK12529 130 PRVKQAFLMATLDGMKQKDIAQAL-DIALPTVKKYIHQAYVTC 171 (178)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344555666666778899999999 999999999987666554
No 136
>PRK00118 putative DNA-binding protein; Validated
Probab=22.03 E-value=2.4e+02 Score=24.62 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 242 ~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
++.++.++.+....|-..++||+.+ |-|...++.+.....++
T Consensus 19 ~ekqRevl~L~y~eg~S~~EIAe~l-GIS~~TV~r~L~RArkk 60 (104)
T PRK00118 19 TEKQRNYMELYYLDDYSLGEIAEEF-NVSRQAVYDNIKRTEKL 60 (104)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3456677777777788999999999 99999998887654443
No 137
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=21.85 E-value=1.6e+02 Score=26.98 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++.+.++.+....|-.-.+||..| |-+...++.|....+++.
T Consensus 139 ~~~r~i~~L~~~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~L 180 (195)
T PRK12532 139 ENTARVFTLKEILGFSSDEIQQMC-GISTSNYHTIMHRARESL 180 (195)
T ss_pred HHHHHHhhhHHHhCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 345556666666788899999999 999999999987655544
No 138
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=21.53 E-value=2.6e+02 Score=23.70 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCC-CHHHHHHHHHH
Q 044021 237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGR-TENTIKNHWNA 280 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gR-T~~qcr~Rw~~ 280 (440)
+..||+|.-..+++++..-|..=+.||+.+ |- .+++++.-+..
T Consensus 5 ~r~~s~EfK~~iv~~~~~~g~sv~~vAr~~-gv~~~~~l~~W~~~ 48 (116)
T COG2963 5 RKKYSPEFKLEAVALYLRGGDTVSEVAREF-GIVSATQLYKWRIQ 48 (116)
T ss_pred cccCCHHHHHHHHHHHHhcCccHHHHHHHh-CCCChHHHHHHHHH
Confidence 578999999999999999999899999999 75 55555543333
No 139
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.22 E-value=1.4e+02 Score=24.76 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=19.9
Q ss_pred HHHHHHHhCCchHHHHHhcCCCCHHHH
Q 044021 248 LIQAHKEVGNRWAEIARRLIGRTENTI 274 (440)
Q Consensus 248 Ll~lv~k~G~kW~~IAk~l~gRT~~qc 274 (440)
|..+....|..|..+|+.| |-+..+|
T Consensus 10 l~~ia~~iG~~Wk~Lar~L-Gls~~dI 35 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHL-EMKDKEI 35 (86)
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 3345678899999999999 6666665
No 140
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=21.03 E-value=1.3e+02 Score=24.15 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=18.8
Q ss_pred HHHHHHHHHHH-hCCchHHHHHhcC
Q 044021 244 EDMILIQAHKE-VGNRWAEIARRLI 267 (440)
Q Consensus 244 ED~~Ll~lv~k-~G~kW~~IAk~l~ 267 (440)
-...|..+++. .|..|..+|+.|+
T Consensus 4 ~~~~~~~l~~~~~g~~W~~la~~Lg 28 (88)
T smart00005 4 TREKLAKLLDHPLGLDWRELARKLG 28 (88)
T ss_pred HHHHHHHHHcCccchHHHHHHHHcC
Confidence 34566667767 8999999999994
No 141
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=20.98 E-value=66 Score=32.74 Aligned_cols=45 Identities=7% Similarity=-0.172 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhh
Q 044021 238 EAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATK 282 (440)
Q Consensus 238 ~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~ll 282 (440)
..||+++..++.+++..|+.-|..|-.+..-++..+++.+|+..+
T Consensus 54 ~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 98 (335)
T KOG0724|consen 54 PRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPF 98 (335)
T ss_pred cccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCc
Confidence 347777777777777777667888887777777777777765543
No 142
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=20.85 E-value=2.1e+02 Score=26.29 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+.+.++.+..-.|-...+||..| |-+...++.|....+++.
T Consensus 134 ~~r~v~~L~~~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~L 174 (185)
T PRK09649 134 DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 174 (185)
T ss_pred HHhHHhhhHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34444445555667899999999 999999999987666554
No 143
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.
Probab=20.68 E-value=2.3e+02 Score=25.43 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
..+.++.+....|-...+||..+ |-+...|+.|....+++.
T Consensus 138 ~~r~v~~l~~~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~L 178 (183)
T TIGR02999 138 RQAEVVELRFFAGLTVEEIAELL-GVSVRTVERDWRFARAWL 178 (183)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 34445555555677899999999 999999999987655543
No 144
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=20.50 E-value=2.5e+02 Score=24.69 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+++..++.+..-.|-.-.+||..| |-+...++.|....+++.
T Consensus 108 ~~~r~v~~l~~~~~~s~~eIA~~l-gis~~tv~~~l~ra~~~L 149 (159)
T PRK12527 108 PACRDSFLLRKLEGLSHQQIAEHL-GISRSLVEKHIVNAMKHC 149 (159)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 556667777767778899999999 999999999987655543
No 145
>PRK00430 fis global DNA-binding transcriptional dual regulator Fis; Provisional
Probab=20.21 E-value=2.4e+02 Score=23.94 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHW 278 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw 278 (440)
-|...|.+++..+|+++.+.|+.+ |=+...++.+-
T Consensus 55 ~Er~~i~~aL~~~~gn~s~AAr~L-GIsRsTL~rKL 89 (95)
T PRK00430 55 VEAPLLDMVMQYTRGNQTRAALML-GINRGTLRKKL 89 (95)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHH
Confidence 477788999999999999999999 55555554443
Done!