Query 044021
Match_columns 440
No_of_seqs 332 out of 1556
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 18:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 3.6E-35 1.2E-39 257.6 11.0 123 163-285 5-127 (128)
2 1h89_C C-MYB, MYB proto-oncoge 100.0 3.1E-33 1E-37 253.5 10.1 130 156-285 29-158 (159)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 9.8E-33 3.4E-37 235.5 11.7 105 185-289 1-105 (107)
4 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.1E-32 3.8E-37 233.6 10.8 104 182-285 1-104 (105)
5 3osg_A MYB21; transcription-DN 100.0 1.3E-31 4.3E-36 234.9 11.4 105 180-285 6-110 (126)
6 3zqc_A MYB3; transcription-DNA 100.0 8.2E-32 2.8E-36 237.4 7.9 106 184-289 1-106 (131)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 5E-29 1.7E-33 225.8 7.2 120 182-301 3-123 (159)
8 2dim_A Cell division cycle 5-l 99.8 2.4E-21 8.3E-26 153.4 4.2 66 180-245 4-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 1.6E-20 5.5E-25 164.4 7.1 91 211-301 1-92 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 7.7E-19 2.6E-23 168.4 8.2 105 181-285 4-200 (246)
11 2juh_A Telomere binding protei 99.7 1.1E-17 3.8E-22 146.1 7.0 85 177-261 9-103 (121)
12 2d9a_A B-MYB, MYB-related prot 99.7 2.6E-17 9E-22 126.3 5.6 57 180-236 3-59 (60)
13 2roh_A RTBP1, telomere binding 99.7 7.9E-17 2.7E-21 141.0 7.8 79 180-258 26-114 (122)
14 2llk_A Cyclin-D-binding MYB-li 99.7 4.9E-17 1.7E-21 130.5 5.9 60 223-283 9-68 (73)
15 1ity_A TRF1; helix-turn-helix, 99.7 4.7E-17 1.6E-21 128.4 5.3 64 178-241 3-68 (69)
16 1gvd_A MYB proto-oncogene prot 99.7 3.7E-17 1.3E-21 122.1 4.2 52 183-234 1-52 (52)
17 1guu_A C-MYB, MYB proto-oncoge 99.6 5.2E-17 1.8E-21 121.1 4.0 52 183-234 1-52 (52)
18 3zqc_A MYB3; transcription-DNA 99.6 2.2E-17 7.6E-22 145.2 1.4 106 156-266 25-130 (131)
19 2din_A Cell division cycle 5-l 99.6 1.1E-15 3.7E-20 119.5 6.9 59 230-289 2-60 (66)
20 2din_A Cell division cycle 5-l 99.6 2.2E-16 7.4E-21 123.5 2.6 59 178-238 2-60 (66)
21 3sjm_A Telomeric repeat-bindin 99.6 4.6E-16 1.6E-20 121.7 4.4 54 183-236 9-64 (64)
22 1x41_A Transcriptional adaptor 99.6 7.3E-16 2.5E-20 118.6 5.1 55 180-234 3-57 (60)
23 2cu7_A KIAA1915 protein; nucle 99.6 2.1E-15 7.2E-20 120.0 7.3 58 231-288 3-60 (72)
24 1gv2_A C-MYB, MYB proto-oncoge 99.6 3.4E-16 1.2E-20 132.2 1.7 78 156-234 27-104 (105)
25 2llk_A Cyclin-D-binding MYB-li 99.6 1.5E-15 5.2E-20 121.8 5.3 62 171-235 9-70 (73)
26 2k9n_A MYB24; R2R3 domain, DNA 99.6 3.2E-16 1.1E-20 133.3 1.2 78 156-234 24-101 (107)
27 2d9a_A B-MYB, MYB-related prot 99.5 3.9E-15 1.3E-19 114.2 5.7 55 232-286 3-58 (60)
28 1w0t_A Telomeric repeat bindin 99.5 2.4E-15 8.2E-20 112.8 4.2 49 184-232 1-51 (53)
29 2elk_A SPCC24B10.08C protein; 99.5 4.3E-15 1.5E-19 113.7 4.8 51 181-231 5-56 (58)
30 2yum_A ZZZ3 protein, zinc fing 99.5 3E-15 1E-19 119.7 3.9 60 180-239 3-67 (75)
31 1guu_A C-MYB, MYB proto-oncoge 99.5 9.3E-15 3.2E-19 108.9 6.2 50 235-284 1-51 (52)
32 3osg_A MYB21; transcription-DN 99.5 9.7E-16 3.3E-20 134.0 0.9 76 156-232 33-108 (126)
33 1w0t_A Telomeric repeat bindin 99.5 2.4E-14 8.1E-19 107.4 6.6 49 236-284 1-52 (53)
34 1gvd_A MYB proto-oncogene prot 99.5 1.9E-14 6.5E-19 107.3 5.8 50 235-284 1-51 (52)
35 2cu7_A KIAA1915 protein; nucle 99.5 8.2E-15 2.8E-19 116.6 3.9 58 179-237 3-60 (72)
36 2dim_A Cell division cycle 5-l 99.5 1.8E-14 6.1E-19 113.8 5.5 60 232-291 4-64 (70)
37 1ity_A TRF1; helix-turn-helix, 99.5 3.3E-14 1.1E-18 112.1 7.0 59 231-289 4-65 (69)
38 1x41_A Transcriptional adaptor 99.5 4E-14 1.4E-18 108.9 6.9 53 232-284 3-56 (60)
39 2yum_A ZZZ3 protein, zinc fing 99.5 6.2E-14 2.1E-18 112.0 6.1 56 232-287 3-64 (75)
40 3sjm_A Telomeric repeat-bindin 99.4 1.3E-13 4.4E-18 107.8 6.7 51 235-285 9-62 (64)
41 2elk_A SPCC24B10.08C protein; 99.4 2.2E-13 7.4E-18 104.3 7.1 50 233-282 5-56 (58)
42 2ckx_A NGTRF1, telomere bindin 99.4 3.8E-13 1.3E-17 110.4 6.8 69 186-254 1-79 (83)
43 2aje_A Telomere repeat-binding 99.4 2.5E-13 8.4E-18 116.1 5.3 78 179-256 7-94 (105)
44 2ltp_A Nuclear receptor corepr 99.1 4.1E-14 1.4E-18 117.2 0.0 56 230-285 9-64 (89)
45 2yus_A SWI/SNF-related matrix- 99.4 3.9E-13 1.3E-17 109.3 5.3 52 178-230 11-62 (79)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.3 6.3E-13 2.1E-17 106.6 2.4 54 179-232 12-68 (73)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.3 2.7E-12 9.1E-17 103.0 5.9 52 233-284 14-69 (73)
48 2ltp_A Nuclear receptor corepr 98.9 3E-13 1E-17 112.1 0.0 55 178-233 9-63 (89)
49 2yus_A SWI/SNF-related matrix- 99.3 3.3E-12 1.1E-16 103.8 5.7 48 234-281 15-62 (79)
50 1x58_A Hypothetical protein 49 99.2 2.2E-11 7.6E-16 94.5 5.8 50 236-285 7-59 (62)
51 2ckx_A NGTRF1, telomere bindin 99.2 3.7E-11 1.2E-15 98.6 7.0 49 238-286 1-54 (83)
52 2aje_A Telomere repeat-binding 99.1 7.6E-11 2.6E-15 100.7 6.8 53 233-285 9-66 (105)
53 2juh_A Telomere binding protei 99.1 7.9E-11 2.7E-15 102.9 6.5 55 230-284 10-69 (121)
54 2cjj_A Radialis; plant develop 99.1 1.9E-10 6.6E-15 96.2 7.1 50 236-285 7-60 (93)
55 1ign_A Protein (RAP1); RAP1,ye 99.1 8.2E-11 2.8E-15 113.0 5.3 55 233-287 4-64 (246)
56 2roh_A RTBP1, telomere binding 99.1 2.4E-10 8.3E-15 99.9 7.6 53 233-285 27-84 (122)
57 2cjj_A Radialis; plant develop 99.1 5.6E-11 1.9E-15 99.4 3.1 48 184-231 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.9 1.3E-09 4.3E-14 84.1 5.9 48 236-283 11-58 (61)
59 1x58_A Hypothetical protein 49 98.8 1.1E-09 3.8E-14 85.0 3.0 48 184-232 7-57 (62)
60 3hm5_A DNA methyltransferase 1 98.8 7.5E-09 2.6E-13 86.5 6.9 67 219-289 16-87 (93)
61 2iw5_B Protein corest, REST co 98.8 1.2E-08 4.2E-13 97.3 8.1 78 207-285 104-181 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.8 6.6E-09 2.3E-13 80.1 4.7 46 184-230 11-56 (61)
63 2cqq_A RSGI RUH-037, DNAJ homo 98.7 6E-09 2.1E-13 83.2 3.5 51 182-233 5-58 (72)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.7 2.3E-08 7.7E-13 79.9 6.7 49 235-284 6-58 (72)
65 2xag_B REST corepressor 1; ami 98.6 2E-08 6.9E-13 105.2 5.9 47 238-284 381-427 (482)
66 1wgx_A KIAA1903 protein; MYB D 98.5 6.3E-08 2.1E-12 77.6 3.7 51 237-287 8-62 (73)
67 1wgx_A KIAA1903 protein; MYB D 98.5 7.7E-08 2.6E-12 77.1 3.6 49 185-233 8-59 (73)
68 1ofc_X ISWI protein; nuclear p 98.4 6.2E-07 2.1E-11 89.3 8.9 98 187-285 112-276 (304)
69 1fex_A TRF2-interacting telome 98.3 1.6E-07 5.6E-12 72.1 2.5 48 185-232 2-58 (59)
70 2iw5_B Protein corest, REST co 98.3 4.5E-07 1.5E-11 86.5 5.7 53 179-232 127-179 (235)
71 1fex_A TRF2-interacting telome 98.2 1.2E-06 4.2E-11 67.2 5.0 47 237-283 2-58 (59)
72 3hm5_A DNA methyltransferase 1 98.1 3.7E-07 1.3E-11 76.3 0.5 57 171-232 20-81 (93)
73 2yqk_A Arginine-glutamic acid 98.1 5.6E-06 1.9E-10 64.1 6.7 51 232-282 4-55 (63)
74 4eef_G F-HB80.4, designed hema 97.9 9.1E-07 3.1E-11 70.7 -0.9 44 185-228 20-66 (74)
75 1ug2_A 2610100B20RIK gene prod 97.9 1.6E-05 5.3E-10 66.0 6.3 48 238-285 34-84 (95)
76 4eef_G F-HB80.4, designed hema 97.8 4.2E-06 1.5E-10 66.9 0.4 43 237-279 20-66 (74)
77 2yqk_A Arginine-glutamic acid 97.7 2.3E-05 7.9E-10 60.6 4.3 49 180-229 4-53 (63)
78 2lr8_A CAsp8-associated protei 96.9 5.2E-06 1.8E-10 65.4 0.0 45 239-284 16-63 (70)
79 4iej_A DNA methyltransferase 1 97.7 8.5E-05 2.9E-09 62.0 7.0 60 226-289 23-87 (93)
80 2crg_A Metastasis associated p 97.7 7.8E-05 2.7E-09 58.9 6.4 46 237-282 8-54 (70)
81 4b4c_A Chromodomain-helicase-D 97.7 0.00023 7.8E-09 66.3 10.6 101 185-285 7-197 (211)
82 4a69_C Nuclear receptor corepr 97.6 7.6E-05 2.6E-09 62.2 5.9 47 237-283 43-89 (94)
83 2y9y_A Imitation switch protei 97.5 0.00038 1.3E-08 71.0 9.7 99 187-286 125-293 (374)
84 2xag_B REST corepressor 1; ami 97.3 0.00023 8E-09 74.7 5.8 48 182-230 377-424 (482)
85 1ug2_A 2610100B20RIK gene prod 97.2 0.00018 6.2E-09 59.6 3.2 46 186-231 34-81 (95)
86 2lr8_A CAsp8-associated protei 96.3 5.3E-05 1.8E-09 59.7 0.0 45 187-232 16-62 (70)
87 4a69_C Nuclear receptor corepr 97.2 0.00024 8.1E-09 59.2 3.6 43 185-228 43-85 (94)
88 2crg_A Metastasis associated p 97.1 0.00031 1.1E-08 55.4 3.7 44 185-229 8-52 (70)
89 2ebi_A DNA binding protein GT- 97.0 0.00065 2.2E-08 55.0 4.9 48 237-284 4-65 (86)
90 2ebi_A DNA binding protein GT- 97.0 0.00023 8E-09 57.7 1.7 49 184-232 3-64 (86)
91 4iej_A DNA methyltransferase 1 96.5 0.0019 6.5E-08 53.8 3.8 46 186-232 31-81 (93)
92 1irz_A ARR10-B; helix-turn-hel 95.9 0.031 1E-06 43.5 7.6 49 236-284 6-59 (64)
93 1irz_A ARR10-B; helix-turn-hel 93.7 0.079 2.7E-06 41.2 4.7 48 183-230 5-56 (64)
94 1ofc_X ISWI protein; nuclear p 92.1 0.21 7.2E-06 49.6 6.3 49 237-285 110-159 (304)
95 4b4c_A Chromodomain-helicase-D 89.5 0.48 1.6E-05 43.6 5.8 50 235-284 5-59 (211)
96 2xb0_X Chromo domain-containin 89.2 0.26 9E-06 48.2 3.9 28 186-213 169-196 (270)
97 2xb0_X Chromo domain-containin 86.7 0.43 1.5E-05 46.6 3.8 27 238-264 169-196 (270)
98 2y9y_A Imitation switch protei 79.4 1.6 5.4E-05 44.6 4.5 44 184-227 227-285 (374)
99 3cz6_A DNA-binding protein RAP 65.6 7 0.00024 35.5 4.8 30 181-213 110-147 (168)
100 2o8x_A Probable RNA polymerase 59.0 16 0.00054 26.5 5.1 44 240-285 16-59 (70)
101 2li6_A SWI/SNF chromatin-remod 57.4 9.8 0.00034 32.1 4.1 38 247-284 53-98 (116)
102 1ku3_A Sigma factor SIGA; heli 53.3 23 0.00077 26.4 5.2 43 243-286 13-59 (73)
103 2jrz_A Histone demethylase jar 51.5 19 0.00066 30.3 5.0 39 246-284 43-93 (117)
104 2lm1_A Lysine-specific demethy 51.4 23 0.00078 29.1 5.3 39 246-284 47-97 (107)
105 1kkx_A Transcription regulator 49.1 15 0.00052 31.4 4.0 38 247-284 52-97 (123)
106 2eqy_A RBP2 like, jumonji, at 47.5 25 0.00087 29.8 5.1 39 246-284 45-95 (122)
107 2p7v_B Sigma-70, RNA polymeras 47.4 23 0.00079 26.0 4.3 42 244-286 9-54 (68)
108 2cxy_A BAF250B subunit, HBAF25 45.8 28 0.00094 29.6 5.1 39 246-284 54-104 (125)
109 3i4p_A Transcriptional regulat 44.0 25 0.00087 30.5 4.8 43 243-286 3-46 (162)
110 3hug_A RNA polymerase sigma fa 43.5 46 0.0016 25.8 5.8 42 243-285 40-81 (92)
111 1c20_A DEAD ringer protein; DN 41.0 36 0.0012 29.0 5.1 40 246-285 55-107 (128)
112 3cz6_A DNA-binding protein RAP 40.4 65 0.0022 29.2 6.8 57 193-249 64-126 (168)
113 2jxj_A Histone demethylase jar 39.1 21 0.00072 28.7 3.2 39 246-284 39-89 (96)
114 2p1m_A SKP1-like protein 1A; F 36.6 21 0.00072 31.4 3.0 35 209-250 119-153 (160)
115 2kk0_A AT-rich interactive dom 36.1 45 0.0015 29.1 5.0 39 246-284 67-118 (145)
116 3e7l_A Transcriptional regulat 35.3 67 0.0023 23.5 5.2 36 242-278 18-53 (63)
117 2rq5_A Protein jumonji; develo 34.8 45 0.0015 28.5 4.7 40 246-285 45-97 (121)
118 1ig6_A MRF-2, modulator recogn 34.5 23 0.00079 29.1 2.8 39 246-284 36-87 (107)
119 3i4p_A Transcriptional regulat 34.0 20 0.00068 31.2 2.4 44 191-235 3-46 (162)
120 1tty_A Sigma-A, RNA polymerase 32.3 65 0.0022 24.9 5.0 42 244-286 22-67 (87)
121 1or7_A Sigma-24, RNA polymeras 32.2 67 0.0023 27.5 5.6 40 245-285 145-184 (194)
122 2dbb_A Putative HTH-type trans 32.0 80 0.0027 26.5 5.9 43 243-286 9-52 (151)
123 1x3u_A Transcriptional regulat 31.2 95 0.0032 22.8 5.6 44 240-286 17-60 (79)
124 1fse_A GERE; helix-turn-helix 31.0 91 0.0031 22.5 5.4 46 238-286 10-55 (74)
125 3c57_A Two component transcrip 30.9 89 0.003 24.6 5.6 45 239-286 27-71 (95)
126 2e1c_A Putative HTH-type trans 30.7 70 0.0024 28.1 5.5 43 242-285 26-69 (171)
127 3v7d_A Suppressor of kinetocho 29.5 29 0.001 30.9 2.8 35 208-249 126-160 (169)
128 1ntc_A Protein (nitrogen regul 28.7 84 0.0029 24.7 5.1 36 242-278 50-85 (91)
129 2cyy_A Putative HTH-type trans 28.5 93 0.0032 26.2 5.7 43 243-286 7-50 (151)
130 1je8_A Nitrate/nitrite respons 28.3 1E+02 0.0035 23.5 5.4 44 239-285 21-64 (82)
131 2rq5_A Protein jumonji; develo 28.2 26 0.00089 30.0 2.1 56 195-253 46-113 (121)
132 3mzy_A RNA polymerase sigma-H 28.2 83 0.0028 25.8 5.3 38 246-285 115-152 (164)
133 2ast_A S-phase kinase-associat 27.3 31 0.0011 30.1 2.5 56 188-250 94-154 (159)
134 3ulq_B Transcriptional regulat 27.0 1.5E+02 0.005 23.3 6.3 46 237-285 27-72 (90)
135 2li6_A SWI/SNF chromatin-remod 25.8 22 0.00076 29.8 1.2 39 195-233 53-98 (116)
136 1xsv_A Hypothetical UPF0122 pr 25.7 1.1E+02 0.0037 25.1 5.5 42 244-286 29-70 (113)
137 2jpc_A SSRB; DNA binding prote 24.1 1.4E+02 0.0047 20.8 5.1 40 245-286 3-42 (61)
138 2yqf_A Ankyrin-1; death domain 24.0 1.1E+02 0.0038 25.1 5.2 35 241-276 14-48 (111)
139 1rp3_A RNA polymerase sigma fa 23.6 1.1E+02 0.0037 26.9 5.4 42 243-285 190-231 (239)
140 2cg4_A Regulatory protein ASNC 23.2 1.3E+02 0.0046 25.2 5.7 43 243-286 8-51 (152)
141 1umq_A Photosynthetic apparatu 23.1 1E+02 0.0035 24.3 4.5 36 241-277 39-74 (81)
142 2e1c_A Putative HTH-type trans 22.8 59 0.002 28.6 3.4 44 191-235 27-70 (171)
143 1k78_A Paired box protein PAX5 22.3 3.3E+02 0.011 22.4 9.8 77 186-266 31-118 (149)
144 2p5v_A Transcriptional regulat 22.1 1.3E+02 0.0044 25.6 5.5 43 243-286 10-53 (162)
145 2rnj_A Response regulator prot 22.0 1.2E+02 0.0042 23.3 4.8 44 240-286 30-73 (91)
146 1u78_A TC3 transposase, transp 21.8 3.1E+02 0.011 21.9 11.0 89 186-278 5-100 (141)
147 2q1z_A RPOE, ECF SIGE; ECF sig 21.2 45 0.0015 28.4 2.3 42 243-285 138-179 (184)
148 1s7o_A Hypothetical UPF0122 pr 20.5 1.7E+02 0.0059 24.0 5.7 44 240-285 23-66 (113)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=3.6e-35 Score=257.58 Aligned_cols=123 Identities=51% Similarity=0.933 Sum_probs=103.5
Q ss_pred hhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCH
Q 044021 163 QKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242 (440)
Q Consensus 163 ~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~ 242 (440)
+..++..+|+.||.++++|.+++|+||+|||++|+++|++||..+|..||..|+||++.||++||.++|+|.+++++||+
T Consensus 5 ~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~ 84 (128)
T 1h8a_C 5 IKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 84 (128)
T ss_dssp -----------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCH
T ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCH
Confidence 45677889999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
|||.+|+++|.+||++|+.||+.|||||+.+|++||+.+++++
T Consensus 85 eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999998874
No 2
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=3.1e-33 Score=253.47 Aligned_cols=130 Identities=51% Similarity=0.914 Sum_probs=113.3
Q ss_pred CCcchHHhhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC
Q 044021 156 ENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI 235 (440)
Q Consensus 156 ~N~~~q~~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i 235 (440)
+..+++....++..+|+.||.++++|.+++|+||+|||++|+++|.+||..+|..||..|+||++.||++||.++|+|.+
T Consensus 29 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 108 (159)
T 1h89_C 29 WKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEV 108 (159)
T ss_dssp --------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccc
Confidence 55555556678889999999999999999999999999999999999998789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++++||+|||.+|++++.+||++|+.||+.|||||+++|++||+.+++++
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998875
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.98 E-value=9.8e-33 Score=235.47 Aligned_cols=105 Identities=38% Similarity=0.724 Sum_probs=101.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHH
Q 044021 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIAR 264 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk 264 (440)
||+||+|||++|+++|.+||..+|..||..|+||+++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHhhHHHhhhh
Q 044021 265 RLIGRTENTIKNHWNATKRRQQSKR 289 (440)
Q Consensus 265 ~l~gRT~~qcr~Rw~~llrr~~sk~ 289 (440)
.|+|||+++|++||+.++++..+..
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 9999999999999999998876544
No 4
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.98 E-value=1.1e-32 Score=233.62 Aligned_cols=104 Identities=63% Similarity=1.171 Sum_probs=99.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHH
Q 044021 182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAE 261 (440)
Q Consensus 182 ~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~ 261 (440)
.+++|+||+|||++|+++|++||..+|..||..|+||++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 36899999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 262 IARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 262 IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
||+.|||||+.+|++||+.+++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999998875
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.3e-31 Score=234.94 Aligned_cols=105 Identities=43% Similarity=0.794 Sum_probs=100.5
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 044021 180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRW 259 (440)
Q Consensus 180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW 259 (440)
++..+||+||+|||++|+++|++||. +|..||..|+||+++||++||.++|+|.+++++||+|||.+|+++|.+||.+|
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 45678999999999999999999998 69999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 260 AEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 260 ~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+.||+.|+|||+.+|++||+.++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988774
No 6
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=8.2e-32 Score=237.44 Aligned_cols=106 Identities=39% Similarity=0.810 Sum_probs=101.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHH
Q 044021 184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIA 263 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IA 263 (440)
.||+||+|||++|+++|.+||..+|..||..|+||++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 37999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHhhHHHhhhh
Q 044021 264 RRLIGRTENTIKNHWNATKRRQQSKR 289 (440)
Q Consensus 264 k~l~gRT~~qcr~Rw~~llrr~~sk~ 289 (440)
+.|+|||+++|++||+.++++..+..
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999998876543
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=5e-29 Score=225.77 Aligned_cols=120 Identities=32% Similarity=0.626 Sum_probs=70.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCC-chH
Q 044021 182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGN-RWA 260 (440)
Q Consensus 182 ~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~-kW~ 260 (440)
.+.+|+||+|||++|+++|++||..+|..||..|+||++.||++||.++|+|.+++++||+|||.+|+++|.+||. +|.
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 3578999999999999999999988899999999999999999999999999999999999999999999999996 699
Q ss_pred HHHHhcCCCCHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHh
Q 044021 261 EIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQENYIK 301 (440)
Q Consensus 261 ~IAk~l~gRT~~qcr~Rw~~llrr~~sk~k~~~~~~~~~i~ 301 (440)
.||+.|+|||+.||++||..++.+..++...+.......+.
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 99999999999999999999998877766666544333333
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.4e-21 Score=153.39 Aligned_cols=66 Identities=36% Similarity=0.720 Sum_probs=63.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHH
Q 044021 180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEED 245 (440)
Q Consensus 180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED 245 (440)
.+.+++|+||+|||++|+++|.+||..+|..||..|+||+++||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 467899999999999999999999987899999999999999999999999999999999999998
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.81 E-value=1.6e-20 Score=164.37 Aligned_cols=91 Identities=25% Similarity=0.582 Sum_probs=61.2
Q ss_pred HHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHHhhhh
Q 044021 211 IAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQQSKR 289 (440)
Q Consensus 211 IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~ 289 (440)
||+.|+||++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||..++.+..+++
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 79999999999999999999999999999999999999999999996 69999999999999999999999998877777
Q ss_pred hhhhHHHHHHHh
Q 044021 290 NTRKQLQENYIK 301 (440)
Q Consensus 290 k~~~~~~~~~i~ 301 (440)
..+.......+.
T Consensus 81 ~WT~eEd~~L~~ 92 (128)
T 1h8a_C 81 SWTEEEDRIIYQ 92 (128)
T ss_dssp CCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 666554443333
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.76 E-value=7.7e-19 Score=168.37 Aligned_cols=105 Identities=22% Similarity=0.344 Sum_probs=93.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCC-----hHHHHHHhcCCccccccchhcccccCCCC-------------------
Q 044021 181 NNIIKGQWTPQEDRMLIRLVAQHGTKK-----WSVIAKAMTGRVGKQCRERWYNHLKPDIK------------------- 236 (440)
Q Consensus 181 p~ikKG~WT~EED~~Ll~lV~k~G~~n-----W~~IA~~lpgRt~~QCr~Rw~~~L~p~ik------------------- 236 (440)
+.++|++||+|||++|+++|+++|.++ |..||+.|+|||+.|||+||+.+|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 456789999999999999999998754 99999999999999999999999999986
Q ss_pred ----------CCCCCHHHHHHHHHHHHH-h--------------------------------------------------
Q 044021 237 ----------KEAWSEEEDMILIQAHKE-V-------------------------------------------------- 255 (440)
Q Consensus 237 ----------k~~WT~EED~~Ll~lv~k-~-------------------------------------------------- 255 (440)
+..||.+||..|...+.+ |
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 889999999999999987 2
Q ss_pred ---CC----chHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 256 ---GN----RWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 256 ---G~----kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
|. .|..||+.+|+||..++|+||..+++..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999998765
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.70 E-value=1.1e-17 Score=146.14 Aligned_cols=85 Identities=14% Similarity=0.246 Sum_probs=79.3
Q ss_pred cCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----cCCccccccchhccccc-----CCCCCC-CCCHHHHH
Q 044021 177 LPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM----TGRVGKQCRERWYNHLK-----PDIKKE-AWSEEEDM 246 (440)
Q Consensus 177 ~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l----pgRt~~QCr~Rw~~~L~-----p~ikk~-~WT~EED~ 246 (440)
..+.+..++++||+|||+.|+++|++||.++|..|+..+ ++||..||++||+++++ |.++++ +|+++|+.
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~ 88 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLD 88 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHH
Confidence 446678889999999999999999999998899999985 89999999999999998 999998 99999999
Q ss_pred HHHHHHHHhCCchHH
Q 044021 247 ILIQAHKEVGNRWAE 261 (440)
Q Consensus 247 ~Ll~lv~k~G~kW~~ 261 (440)
+|++++..+|++|.+
T Consensus 89 rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 89 RVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHccchhc
Confidence 999999999999976
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.6e-17 Score=126.34 Aligned_cols=57 Identities=32% Similarity=0.574 Sum_probs=54.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCC
Q 044021 180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIK 236 (440)
Q Consensus 180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ik 236 (440)
.|.+++++||+|||++|+++|.+||..+|..||..|+|||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 477899999999999999999999987799999999999999999999999999875
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.67 E-value=7.9e-17 Score=140.97 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=72.9
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----cCCccccccchhcccc-----cCCCCCCCCCHHH-HHHHH
Q 044021 180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM----TGRVGKQCRERWYNHL-----KPDIKKEAWSEEE-DMILI 249 (440)
Q Consensus 180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l----pgRt~~QCr~Rw~~~L-----~p~ikk~~WT~EE-D~~Ll 249 (440)
....++++||+|||+.|+++|++||.++|..|+..+ ++||..||++||++++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 445578999999999999999999998899999975 8999999999999999 8999999999999 89999
Q ss_pred HHHHHhCCc
Q 044021 250 QAHKEVGNR 258 (440)
Q Consensus 250 ~lv~k~G~k 258 (440)
+++..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999974
No 14
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.67 E-value=4.9e-17 Score=130.50 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=48.1
Q ss_pred ccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021 223 CRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR 283 (440)
Q Consensus 223 Cr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llr 283 (440)
..-||.++|+|.+++++||+|||++|+++|++||++|+.||+.| |||+.+||+||+.+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 9999999999997654
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.66 E-value=4.7e-17 Score=128.45 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=59.2
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc--CCccccccchhcccccCCCCCCCCC
Q 044021 178 PKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT--GRVGKQCRERWYNHLKPDIKKEAWS 241 (440)
Q Consensus 178 ~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp--gRt~~QCr~Rw~~~L~p~ikk~~WT 241 (440)
.+++..++++||+|||++|+++|++||.++|..||..|+ ||++.||++||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 456777899999999999999999999878999999999 9999999999999999999988764
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=3.7e-17 Score=122.05 Aligned_cols=52 Identities=63% Similarity=1.229 Sum_probs=49.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234 (440)
Q Consensus 183 ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ 234 (440)
++||+||+|||++|+++|.+||.++|..||..|+|||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999888999999999999999999999999984
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=5.2e-17 Score=121.14 Aligned_cols=52 Identities=42% Similarity=0.827 Sum_probs=48.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234 (440)
Q Consensus 183 ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ 234 (440)
+++|+||+|||++|+++|.+||..+|..||..|+|||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4689999999999999999999978999999999999999999999999984
No 18
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.64 E-value=2.2e-17 Score=145.21 Aligned_cols=106 Identities=22% Similarity=0.377 Sum_probs=79.9
Q ss_pred CCcchHHhhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC
Q 044021 156 ENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI 235 (440)
Q Consensus 156 ~N~~~q~~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i 235 (440)
|..++..+..++..+|+.||.++++|.+++|+||+|||++|+++|.+||.. |..||..|+|||+.||++||+++|++.+
T Consensus 25 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~-W~~Ia~~l~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 25 WPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSK-WSVIAKLIPGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp GGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSC-HHHHTTTSTTCCHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcC-HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 444444455677889999999999999999999999999999999999976 9999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHHHhc
Q 044021 236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRL 266 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l 266 (440)
..+.|+.+--. .....+.+|+.|++.|
T Consensus 104 ~~~~~~~~~~~----p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 104 STNSNHKEILL----PDRSKKRKAADVPKKL 130 (131)
T ss_dssp CCCTTSCCCCC----CCCC------------
T ss_pred hcCCCcccccC----chhhhhhhhhhcchhc
Confidence 99888765310 0112234587777665
No 19
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=119.54 Aligned_cols=59 Identities=27% Similarity=0.437 Sum_probs=55.5
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHhhhh
Q 044021 230 HLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKR 289 (440)
Q Consensus 230 ~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~ 289 (440)
+|+|.+++++||+|||++|+++|++||.+|..||+ ++|||+.|||+||+.++++..++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 68999999999999999999999999999999999 889999999999999999876543
No 20
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-16 Score=123.53 Aligned_cols=59 Identities=25% Similarity=0.488 Sum_probs=55.3
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCC
Q 044021 178 PKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKE 238 (440)
Q Consensus 178 ~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~ 238 (440)
+++|.+++++||+|||++|+++|++||. +|..||+ ++|||+.||++||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 6889999999999999999999999998 5999999 889999999999999999887664
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=4.6e-16 Score=121.73 Aligned_cols=54 Identities=22% Similarity=0.452 Sum_probs=49.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc--CCccccccchhcccccCCCC
Q 044021 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT--GRVGKQCRERWYNHLKPDIK 236 (440)
Q Consensus 183 ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp--gRt~~QCr~Rw~~~L~p~ik 236 (440)
.+|++||+|||++|+++|++||.++|..||+.++ |||+.||++||+++++++++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4688999999999999999999988999999865 99999999999999998764
No 22
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=7.3e-16 Score=118.62 Aligned_cols=55 Identities=20% Similarity=0.431 Sum_probs=51.4
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021 180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234 (440)
Q Consensus 180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ 234 (440)
.+.+.+++||+|||++|+++|++||..+|..||+.|++||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3678899999999999999999999878999999999999999999999999865
No 23
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.58 E-value=2.1e-15 Score=119.98 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=54.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHhhh
Q 044021 231 LKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSK 288 (440)
Q Consensus 231 L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk 288 (440)
.+|.+++++||+|||++|+++|.+||.+|..||+.|+|||+.|||+||+.++++..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999999999887654
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.57 E-value=3.4e-16 Score=132.20 Aligned_cols=78 Identities=19% Similarity=0.406 Sum_probs=68.3
Q ss_pred CCcchHHhhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021 156 ENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234 (440)
Q Consensus 156 ~N~~~q~~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ 234 (440)
+..+++....++..+|+.||.++++|.+++|+||+|||++|+++|.+||.. |..||+.|||||+.||+.||+.+++..
T Consensus 27 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~-W~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 27 WSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSC-HHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCC-HHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 334444455677889999999999999999999999999999999999975 999999999999999999999888653
No 25
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-15 Score=121.84 Aligned_cols=62 Identities=27% Similarity=0.444 Sum_probs=47.8
Q ss_pred cccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC
Q 044021 171 VKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI 235 (440)
Q Consensus 171 ~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i 235 (440)
+..+|.++++|.+++|+||+|||++|+++|++||.+ |..||+.| |||+.||++||+. |....
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~~ 70 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDTC 70 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCCC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHHc
Confidence 456899999999999999999999999999999987 99999999 9999999999964 54443
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.57 E-value=3.2e-16 Score=133.28 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=69.8
Q ss_pred CCcchHHhhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021 156 ENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234 (440)
Q Consensus 156 ~N~~~q~~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ 234 (440)
+..++..+..++..+|+.||.++++|.+++|+||+|||++|+++|.+||.. |..||+.|||||+.||+.||..+++..
T Consensus 24 W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~-W~~Ia~~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 24 WIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPK-WNKISKFLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSC-HHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcC-HHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence 445555566778889999999999999999999999999999999999985 999999999999999999998877643
No 27
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=3.9e-15 Score=114.19 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=51.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 232 KPDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 232 ~p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+.++++..
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 4778999999999999999999999 699999999999999999999999987653
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.55 E-value=2.4e-15 Score=112.83 Aligned_cols=49 Identities=27% Similarity=0.421 Sum_probs=46.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc--CCccccccchhccccc
Q 044021 184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT--GRVGKQCRERWYNHLK 232 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp--gRt~~QCr~Rw~~~L~ 232 (440)
+||+||+|||++|+++|++||.++|..||..|+ |||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999999878999999999 9999999999999875
No 29
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.53 E-value=4.3e-15 Score=113.74 Aligned_cols=51 Identities=22% Similarity=0.512 Sum_probs=47.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc-CCccccccchhcccc
Q 044021 181 NNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-GRVGKQCRERWYNHL 231 (440)
Q Consensus 181 p~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp-gRt~~QCr~Rw~~~L 231 (440)
..+.+++||+|||++|+++|++||..+|..||+.|+ +||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999888999999999 999999999998875
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3e-15 Score=119.74 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=55.5
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCC-----CChHHHHHHhcCCccccccchhcccccCCCCCCC
Q 044021 180 KNNIIKGQWTPQEDRMLIRLVAQHGT-----KKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEA 239 (440)
Q Consensus 180 kp~ikKG~WT~EED~~Ll~lV~k~G~-----~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~ 239 (440)
+|.+.+++||+|||++|+++|.+||. .+|..||..|+|||+.||++||+++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999999999999999996 6799999999999999999999999998877664
No 31
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.53 E-value=9.3e-15 Score=108.88 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 235 IKKEAWSEEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 235 ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
+++++||+|||.+|+++|.+||. +|..||+.|+|||+.||++||+.++++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 899999999999999999999998864
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.53 E-value=9.7e-16 Score=133.97 Aligned_cols=76 Identities=21% Similarity=0.388 Sum_probs=68.4
Q ss_pred CCcchHHhhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021 156 ENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 156 ~N~~~q~~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~ 232 (440)
|..++.....++..+|+.||.++++|.+++|+||+|||++|+++|.+||.+ |..||+.|+|||..||++||..+++
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~-W~~Ia~~l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ-WAIIAKFFPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC-HHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC-HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 445555555678889999999999999999999999999999999999975 9999999999999999999988765
No 33
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.50 E-value=2.4e-14 Score=107.37 Aligned_cols=49 Identities=31% Similarity=0.569 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcC--CCCHHHHHHHHHHhhHH
Q 044021 236 KKEAWSEEEDMILIQAHKEVG-NRWAEIARRLI--GRTENTIKNHWNATKRR 284 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~--gRT~~qcr~Rw~~llrr 284 (440)
++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999998875
No 34
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.50 E-value=1.9e-14 Score=107.32 Aligned_cols=50 Identities=32% Similarity=0.654 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 235 IKKEAWSEEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 235 ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||..++++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 699999999999999999999988754
No 35
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.50 E-value=8.2e-15 Score=116.58 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=53.9
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCC
Q 044021 179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKK 237 (440)
Q Consensus 179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk 237 (440)
..|.+++|+||+|||++|+++|++||. +|..||..|+|||+.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999998 5999999999999999999999999877665
No 36
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.8e-14 Score=113.84 Aligned_cols=60 Identities=27% Similarity=0.375 Sum_probs=54.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHHHhhhhhh
Q 044021 232 KPDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNT 291 (440)
Q Consensus 232 ~p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~k~ 291 (440)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||+.++++..+++..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~w 64 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEW 64 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCC
Confidence 4678999999999999999999999 79999999999999999999999999887665443
No 37
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.49 E-value=3.3e-14 Score=112.09 Aligned_cols=59 Identities=25% Similarity=0.433 Sum_probs=53.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcC--CCCHHHHHHHHHHhhHHHhhhh
Q 044021 231 LKPDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLI--GRTENTIKNHWNATKRRQQSKR 289 (440)
Q Consensus 231 L~p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~--gRT~~qcr~Rw~~llrr~~sk~ 289 (440)
..+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+.++++...+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 45677899999999999999999999 69999999999 9999999999999999876543
No 38
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=4e-14 Score=108.88 Aligned_cols=53 Identities=19% Similarity=0.477 Sum_probs=49.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 232 KPDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 232 ~p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
.+.+.+++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||+.++..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3568899999999999999999999 7999999999999999999999988754
No 39
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.2e-14 Score=112.04 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=51.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC------CchHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021 232 KPDIKKEAWSEEEDMILIQAHKEVG------NRWAEIARRLIGRTENTIKNHWNATKRRQQS 287 (440)
Q Consensus 232 ~p~ikk~~WT~EED~~Ll~lv~k~G------~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~s 287 (440)
+|.+.+++||+|||++|+++|.+|| .+|..||+.|+|||..||++||+.++++..+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 4778899999999999999999999 6899999999999999999999988877543
No 40
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.44 E-value=1.3e-13 Score=107.81 Aligned_cols=51 Identities=31% Similarity=0.575 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcC--CCCHHHHHHHHHHhhHHH
Q 044021 235 IKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLI--GRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 235 ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~--gRT~~qcr~Rw~~llrr~ 285 (440)
.++++||+|||++|+++|.+|| ++|+.||+.++ |||+.|||+||+.+++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4688999999999999999999 58999999976 999999999999998764
No 41
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.43 E-value=2.2e-13 Score=104.26 Aligned_cols=50 Identities=30% Similarity=0.586 Sum_probs=45.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcC-CCCHHHHHHHHHHhh
Q 044021 233 PDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLI-GRTENTIKNHWNATK 282 (440)
Q Consensus 233 p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~-gRT~~qcr~Rw~~ll 282 (440)
..+.+++||+|||++|+++|.+|| ++|..||+.|+ |||+.|||+||..+.
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 89999999999 999999999998754
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.39 E-value=3.8e-13 Score=110.39 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHH----hcCCccccccchhcccc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 044021 186 GQWTPQEDRMLIRLVAQHGTKKWSVIAKA----MTGRVGKQCRERWYNHL-----KPDIKKE-AWSEEEDMILIQAHKE 254 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~~----lpgRt~~QCr~Rw~~~L-----~p~ikk~-~WT~EED~~Ll~lv~k 254 (440)
++||+|||++|+++|++||.++|..|++. |+|||+.+|++||++++ +|.++++ +..++....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999889999996 89999999999999988 5766654 6788888888888764
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.38 E-value=2.5e-13 Score=116.06 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=66.7
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----cCCccccccchhcccc-----cCCCCCCCCCHHHHHH-H
Q 044021 179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM----TGRVGKQCRERWYNHL-----KPDIKKEAWSEEEDMI-L 248 (440)
Q Consensus 179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l----pgRt~~QCr~Rw~~~L-----~p~ikk~~WT~EED~~-L 248 (440)
.....++++||+|||++|+++|++||.++|..|+..+ ++||..+|++||++++ +|.++++.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 3456678999999999999999999998899999965 8999999999999998 6889999888877665 7
Q ss_pred HHHHHHhC
Q 044021 249 IQAHKEVG 256 (440)
Q Consensus 249 l~lv~k~G 256 (440)
++++..+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776665
No 44
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.07 E-value=4.1e-14 Score=117.22 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=53.0
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 230 HLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 230 ~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
.+.|.+++++||+|||.+|+++|.+||.+|..||+.|+|||+.||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56788999999999999999999999999999999999999999999999988874
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=109.26 Aligned_cols=52 Identities=17% Similarity=0.393 Sum_probs=48.1
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021 178 PKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH 230 (440)
Q Consensus 178 ~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~ 230 (440)
.+.....+++||+|||++|+++|++|| .+|..||++|++||+.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 455667789999999999999999999 6799999999999999999999988
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.29 E-value=6.3e-13 Score=106.62 Aligned_cols=54 Identities=17% Similarity=0.400 Sum_probs=48.4
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhC---CCChHHHHHHhcCCccccccchhccccc
Q 044021 179 KKNNIIKGQWTPQEDRMLIRLVAQHG---TKKWSVIAKAMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 179 kkp~ikKG~WT~EED~~Ll~lV~k~G---~~nW~~IA~~lpgRt~~QCr~Rw~~~L~ 232 (440)
.++.+.+++||+|||++|++++.+|| ..+|..||.+|||||..||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44667899999999999999999999 3469999999999999999999987664
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.29 E-value=2.7e-12 Score=102.96 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 233 PDIKKEAWSEEEDMILIQAHKEVG----NRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 233 p~ikk~~WT~EED~~Ll~lv~k~G----~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
+.+.+++||.+||.+|++++.+|| .+|.+||+.|||||..||++||+.+++-
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456789999999999999999999 6899999999999999999999988653
No 48
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.95 E-value=3e-13 Score=112.07 Aligned_cols=55 Identities=25% Similarity=0.497 Sum_probs=50.9
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccC
Q 044021 178 PKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKP 233 (440)
Q Consensus 178 ~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p 233 (440)
...|.+.+|+||+|||++|+++|.+||.+ |..||..|+|||+.||++||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~-W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRN-WSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 45688899999999999999999999985 99999999999999999999998863
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.27 E-value=3.3e-12 Score=103.76 Aligned_cols=48 Identities=19% Similarity=0.435 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHh
Q 044021 234 DIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNAT 281 (440)
Q Consensus 234 ~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~l 281 (440)
...+++||+|||.+|+++|.+||++|.+||++|++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999999999765
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=2.2e-11 Score=94.52 Aligned_cols=50 Identities=20% Similarity=0.348 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHHH---hcCCCCHHHHHHHHHHhhHHH
Q 044021 236 KKEAWSEEEDMILIQAHKEVGNRWAEIAR---RLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk---~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++.+||+|||+.|+++|++||.+|+.|+. ++++||..++++||+.+.|+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 67899999999999999999999999994 668999999999999988763
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.17 E-value=3.7e-11 Score=98.58 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chHHHHHh----cCCCCHHHHHHHHHHhhHHHh
Q 044021 238 EAWSEEEDMILIQAHKEVGN-RWAEIARR----LIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 238 ~~WT~EED~~Ll~lv~k~G~-kW~~IAk~----l~gRT~~qcr~Rw~~llrr~~ 286 (440)
++||+|||+.|+++|++||. +|+.|++. |+|||+.+||+||++++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999996 99999996 899999999999999998653
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.12 E-value=7.6e-11 Score=100.67 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=48.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhc----CCCCHHHHHHHHHHhhHHH
Q 044021 233 PDIKKEAWSEEEDMILIQAHKEVGN-RWAEIARRL----IGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 233 p~ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l----~gRT~~qcr~Rw~~llrr~ 285 (440)
+..++++||+|||+.|+++|++||. +|+.|++.+ +|||..+||+||+.+++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4567899999999999999999996 999999965 8999999999999999754
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.11 E-value=7.9e-11 Score=102.89 Aligned_cols=55 Identities=24% Similarity=0.418 Sum_probs=50.2
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhc----CCCCHHHHHHHHHHhhHH
Q 044021 230 HLKPDIKKEAWSEEEDMILIQAHKEVGN-RWAEIARRL----IGRTENTIKNHWNATKRR 284 (440)
Q Consensus 230 ~L~p~ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l----~gRT~~qcr~Rw~~llrr 284 (440)
-+.+..++++||+|||+.|+++|++||. +|+.|++.+ +|||..+||+||+.+++.
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3556778999999999999999999996 999999984 899999999999999985
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.07 E-value=1.9e-10 Score=96.18 Aligned_cols=50 Identities=28% Similarity=0.525 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 236 KKEAWSEEEDMILIQAHKEVG----NRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G----~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
.+++||.|||.+|++++.+|| ++|.+||+.|||||..+|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999987664
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.07 E-value=8.2e-11 Score=113.03 Aligned_cols=55 Identities=20% Similarity=0.421 Sum_probs=48.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021 233 PDIKKEAWSEEEDMILIQAHKEVGNR------WAEIARRLIGRTENTIKNHWNATKRRQQS 287 (440)
Q Consensus 233 p~ikk~~WT~EED~~Ll~lv~k~G~k------W~~IAk~l~gRT~~qcr~Rw~~llrr~~s 287 (440)
+.+++++||+|||++|+++|++||++ |..||+.|+|||++|||+||+.+|++...
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999875 99999999999999999999999988754
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.06 E-value=2.4e-10 Score=99.93 Aligned_cols=53 Identities=21% Similarity=0.423 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhc----CCCCHHHHHHHHHHhhHHH
Q 044021 233 PDIKKEAWSEEEDMILIQAHKEVGN-RWAEIARRL----IGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 233 p~ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l----~gRT~~qcr~Rw~~llrr~ 285 (440)
...++++||+|||+.|+++|++||. +|+.|++.+ +|||..+||+||+++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3456889999999999999999996 999999974 8999999999999999754
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.05 E-value=5.6e-11 Score=99.45 Aligned_cols=48 Identities=19% Similarity=0.478 Sum_probs=43.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhC---CCChHHHHHHhcCCccccccchhcccc
Q 044021 184 IKGQWTPQEDRMLIRLVAQHG---TKKWSVIAKAMTGRVGKQCRERWYNHL 231 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~G---~~nW~~IA~~lpgRt~~QCr~Rw~~~L 231 (440)
.++.||+|||++|++++.+|| ..+|..||..|||||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 367899999999999999997 456999999999999999999998764
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=84.11 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021 236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR 283 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llr 283 (440)
...+||+||++++++++.+||.+|..||..|++||..+|+.+|...++
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999987654
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.84 E-value=1.1e-09 Score=84.99 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=43.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCChHHHHH---HhcCCccccccchhccccc
Q 044021 184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAK---AMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~---~lpgRt~~QCr~Rw~~~L~ 232 (440)
.+++||+|||+.|+++|++||. +|..|+. .+++||...+++||+++..
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 5789999999999999999998 6999994 6789999999999987654
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.80 E-value=7.5e-09 Score=86.51 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=59.7
Q ss_pred ccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhc-----CCCCHHHHHHHHHHhhHHHhhhh
Q 044021 219 VGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRL-----IGRTENTIKNHWNATKRRQQSKR 289 (440)
Q Consensus 219 t~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l-----~gRT~~qcr~Rw~~llrr~~sk~ 289 (440)
...=+.++|.++|.+ .+||.||+..|++++++||.+|..|+.++ ++||..++|+||..+.++....+
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345678899999976 89999999999999999999999999999 58999999999999988876544
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.77 E-value=1.2e-08 Score=97.27 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=57.1
Q ss_pred ChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 207 KWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 207 nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+|..+-..|..+....+ ++++..-.......+||+||+.++++++.+||++|..||+.+++||..||+++|+..++|.
T Consensus 104 ~~kQ~~~~L~~~~~~~I-e~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 104 NIKQTNSALKEKLDGGI-EPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp HHHHHHHHHHHHSTTTT-GGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHhhc-ccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 46666655544443222 2343311112235699999999999999999999999999999999999999999877653
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=6.6e-09 Score=80.06 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=42.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021 184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH 230 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~ 230 (440)
..++||+||++++++++.+||. +|..||..|++||..||..+|...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4679999999999999999996 599999999999999999999654
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.71 E-value=6e-09 Score=83.20 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=44.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhC---CCChHHHHHHhcCCccccccchhcccccC
Q 044021 182 NIIKGQWTPQEDRMLIRLVAQHG---TKKWSVIAKAMTGRVGKQCRERWYNHLKP 233 (440)
Q Consensus 182 ~ikKG~WT~EED~~Ll~lV~k~G---~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p 233 (440)
...++.||.|||++|.+++.+|+ +++|.+||..+ |||..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34577899999999999999997 45699999998 99999999999776543
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.70 E-value=2.3e-08 Score=79.88 Aligned_cols=49 Identities=24% Similarity=0.431 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----CchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 235 IKKEAWSEEEDMILIQAHKEVG----NRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 235 ikk~~WT~EED~~Ll~lv~k~G----~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
.+.+.||.|||++|.+++.+|+ .+|.+||..+ |||..+|++||+.+++.
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 4567999999999999999997 5799999998 99999999999887654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.64 E-value=2e-08 Score=105.18 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 238 EAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 238 ~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
..||++|..++++++.+||.+|..||+.+++||..|||++|....+|
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999765444
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.49 E-value=6.3e-08 Score=77.58 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021 237 KEAWSEEEDMILIQAHKEVGN----RWAEIARRLIGRTENTIKNHWNATKRRQQS 287 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~----kW~~IAk~l~gRT~~qcr~Rw~~llrr~~s 287 (440)
...||.+|+++|.+++..|+. +|.+||..++|||..+|+.||..+++...+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s 62 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGS 62 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcccc
Confidence 468999999999999999984 699999999999999999999998665443
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.47 E-value=7.7e-08 Score=77.06 Aligned_cols=49 Identities=20% Similarity=0.400 Sum_probs=43.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhcCCccccccchhcccccC
Q 044021 185 KGQWTPQEDRMLIRLVAQHGT---KKWSVIAKAMTGRVGKQCRERWYNHLKP 233 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G~---~nW~~IA~~lpgRt~~QCr~Rw~~~L~p 233 (440)
...||.+|+++|.+++..|+. ++|..||..++|||..+|+.||..++.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999975 4699999999999999999999877543
No 68
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.39 E-value=6.2e-07 Score=89.27 Aligned_cols=98 Identities=19% Similarity=0.256 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccc-----------------------------------
Q 044021 187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHL----------------------------------- 231 (440)
Q Consensus 187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L----------------------------------- 231 (440)
.||..+...++.++.+||..+|..||..|+|+|...++.. ...+
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y-~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEY-NAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHH-HHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHH-HHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999998776441 1111
Q ss_pred ----------------cCCCCCCCCCHHHHHHHHHHHHHhCC----chHHHHH------------hcCCCCHHHHHHHHH
Q 044021 232 ----------------KPDIKKEAWSEEEDMILIQAHKEVGN----RWAEIAR------------RLIGRTENTIKNHWN 279 (440)
Q Consensus 232 ----------------~p~ikk~~WT~EED~~Ll~lv~k~G~----kW~~IAk------------~l~gRT~~qcr~Rw~ 279 (440)
-+..+...||++||+.||-++.+||- .|..|.. ++..||+.+|..|.+
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 01224568999999999999999994 5999973 456899999999999
Q ss_pred HhhHHH
Q 044021 280 ATKRRQ 285 (440)
Q Consensus 280 ~llrr~ 285 (440)
.|++--
T Consensus 271 tLi~~i 276 (304)
T 1ofc_X 271 TLITLI 276 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.34 E-value=1.6e-07 Score=72.11 Aligned_cols=48 Identities=21% Similarity=0.506 Sum_probs=43.6
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCChHHHHH-HhcCCccccccchhccccc
Q 044021 185 KGQWTPQEDRMLIRLVAQH--------GTKKWSVIAK-AMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~--------G~~nW~~IA~-~lpgRt~~QCr~Rw~~~L~ 232 (440)
|.+||+|||.+|++.|.+| |..-|..+|+ .++++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5556999999 7999999999999998874
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.33 E-value=4.5e-07 Score=86.55 Aligned_cols=53 Identities=13% Similarity=0.299 Sum_probs=46.6
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021 179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~ 232 (440)
.......++||.||++++++++.+||. +|..||+.|++||..||+.+|.++..
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344456789999999999999999996 59999999999999999999987654
No 71
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.22 E-value=1.2e-06 Score=67.20 Aligned_cols=47 Identities=21% Similarity=0.478 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-hHHHHH-hcCCCCHHHHHHHHHHhhH
Q 044021 237 KEAWSEEEDMILIQAHKEV--------GNR-WAEIAR-RLIGRTENTIKNHWNATKR 283 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~--------G~k-W~~IAk-~l~gRT~~qcr~Rw~~llr 283 (440)
+.+||+|||..|++.|.+| |++ |..+++ .++++|-.+||+||.+.++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 7999999999999987653
No 72
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.13 E-value=3.7e-07 Score=76.26 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=49.3
Q ss_pred cccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-----cCCccccccchhccccc
Q 044021 171 VKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM-----TGRVGKQCRERWYNHLK 232 (440)
Q Consensus 171 ~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l-----pgRt~~QCr~Rw~~~L~ 232 (440)
+..+|+.++.+ ++||.||+..|++|+++|+.+ |..|+..+ ++||..++++||..+..
T Consensus 20 t~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 20 SEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 34567777755 799999999999999999987 99999999 58999999999977654
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=5.6e-06 Score=64.12 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=45.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHH-hcCCCCHHHHHHHHHHhh
Q 044021 232 KPDIKKEAWSEEEDMILIQAHKEVGNRWAEIAR-RLIGRTENTIKNHWNATK 282 (440)
Q Consensus 232 ~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk-~l~gRT~~qcr~Rw~~ll 282 (440)
.|.+....||+||-.+..+++.+||.+|..|++ .+++||..+|...|....
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 366778899999999999999999999999999 589999999998886543
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.93 E-value=9.1e-07 Score=70.74 Aligned_cols=44 Identities=14% Similarity=0.366 Sum_probs=39.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhcCCccccccchhc
Q 044021 185 KGQWTPQEDRMLIRLVAQHGTK---KWSVIAKAMTGRVGKQCRERWY 228 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G~~---nW~~IA~~lpgRt~~QCr~Rw~ 228 (440)
.+.||.||+++|.+++..|+.. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999754 7999999999999999999984
No 75
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.92 E-value=1.6e-05 Score=65.96 Aligned_cols=48 Identities=17% Similarity=0.363 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC---chHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 238 EAWSEEEDMILIQAHKEVGN---RWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 238 ~~WT~EED~~Ll~lv~k~G~---kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
--||.|||+.||...++-|. .|..||+.|.+|+++|+++||+.+++--
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 36999999999999999996 6999999999999999999999988753
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.76 E-value=4.2e-06 Score=66.89 Aligned_cols=43 Identities=26% Similarity=0.542 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chHHHHHhcCCCCHHHHHHHHH
Q 044021 237 KEAWSEEEDMILIQAHKEVGN----RWAEIARRLIGRTENTIKNHWN 279 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~----kW~~IAk~l~gRT~~qcr~Rw~ 279 (440)
...||.+|+++|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999985 6999999999999999999985
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=2.3e-05 Score=60.64 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=43.4
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHH-HhcCCccccccchhcc
Q 044021 180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAK-AMTGRVGKQCRERWYN 229 (440)
Q Consensus 180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~-~lpgRt~~QCr~Rw~~ 229 (440)
.|.+....||+||-++..+++.+||.. |..|++ .|++|+..||...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKd-f~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKN-FFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSC-HHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCcc-HHHHHHHHcCCCcHHHHHHHHhc
Confidence 466778899999999999999999975 999999 5899999999887743
No 78
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.88 E-value=5.2e-06 Score=65.35 Aligned_cols=45 Identities=16% Similarity=0.455 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHhCC---chHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 239 AWSEEEDMILIQAHKEVGN---RWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 239 ~WT~EED~~Ll~lv~k~G~---kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
-||.|||+.||..+++-|. .|+.||+.| +||++|+.+||+.+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 699999999 99999999999988764
No 79
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.67 E-value=8.5e-05 Score=61.96 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=50.6
Q ss_pred hhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcC-----CCCHHHHHHHHHHhhHHHhhhh
Q 044021 226 RWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLI-----GRTENTIKNHWNATKRRQQSKR 289 (440)
Q Consensus 226 Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~-----gRT~~qcr~Rw~~llrr~~sk~ 289 (440)
-|..+|. ...||.||...|++++++|+-+|..|+..+. +||-.++|.||..+.++....+
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3444554 3689999999999999999999999999874 7999999999999988876543
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.67 E-value=7.8e-05 Score=58.87 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHH-hcCCCCHHHHHHHHHHhh
Q 044021 237 KEAWSEEEDMILIQAHKEVGNRWAEIAR-RLIGRTENTIKNHWNATK 282 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk-~l~gRT~~qcr~Rw~~ll 282 (440)
...||+||-.++.+++.+||.+|..|++ .|++||..+|...|....
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 54 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWK 54 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999999999 589999999999987433
No 81
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.66 E-value=0.00023 Score=66.25 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=71.6
Q ss_pred cCCCCHHHHHHHHHHHHHhC--CCChHHHHHH--hcCCccccccchhc-------c------------------------
Q 044021 185 KGQWTPQEDRMLIRLVAQHG--TKKWSVIAKA--MTGRVGKQCRERWY-------N------------------------ 229 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G--~~nW~~IA~~--lpgRt~~QCr~Rw~-------~------------------------ 229 (440)
...||..|-..|++++.+|| ..+|..|+.. |.+|+...++.-+. .
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPTF 86 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchhh
Confidence 45799999999999999999 5679999875 56776644332000 0
Q ss_pred --------------------ccc--------------------CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHh--c
Q 044021 230 --------------------HLK--------------------PDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARR--L 266 (440)
Q Consensus 230 --------------------~L~--------------------p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~--l 266 (440)
.|. +......||++||..||.++.+|| ++|..|-.. +
T Consensus 87 ~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l 166 (211)
T 4b4c_A 87 RISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDL 166 (211)
T ss_dssp EETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSS
T ss_pred hhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhc
Confidence 000 000123599999999999999999 899999762 1
Q ss_pred ------------CCCCHHHHHHHHHHhhHHH
Q 044021 267 ------------IGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 267 ------------~gRT~~qcr~Rw~~llrr~ 285 (440)
..++...+..|...+++-.
T Consensus 167 ~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 167 SLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp SCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CccccccccccccCCChHHHHHHHHHHHHHH
Confidence 1245677999988877754
No 82
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.61 E-value=7.6e-05 Score=62.21 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021 237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR 283 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llr 283 (440)
...||+||..++.+++..||.+|..||..|++||..+|...|....+
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK 89 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcccc
Confidence 46899999999999999999999999999999999999999876544
No 83
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.45 E-value=0.00038 Score=70.96 Aligned_cols=99 Identities=20% Similarity=0.340 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHhc-CCccccccchhcccc----------------------------------
Q 044021 187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-GRVGKQCRERWYNHL---------------------------------- 231 (440)
Q Consensus 187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp-gRt~~QCr~Rw~~~L---------------------------------- 231 (440)
.||.-+=..++.++.+||..+-..||..|. |++...++. |.+.+
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999997 888866653 22211
Q ss_pred ------------------cCC-CCCCCCCHHHHHHHHHHHHHhC----CchHHHHHh------------cCCCCHHHHHH
Q 044021 232 ------------------KPD-IKKEAWSEEEDMILIQAHKEVG----NRWAEIARR------------LIGRTENTIKN 276 (440)
Q Consensus 232 ------------------~p~-ikk~~WT~EED~~Ll~lv~k~G----~kW~~IAk~------------l~gRT~~qcr~ 276 (440)
.+. .++..||++||..||-++.+|| +.|..|-.. +..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 011 1345799999999999999999 459999542 45799999999
Q ss_pred HHHHhhHHHh
Q 044021 277 HWNATKRRQQ 286 (440)
Q Consensus 277 Rw~~llrr~~ 286 (440)
|.+.|++-..
T Consensus 284 Rc~tLi~~Ie 293 (374)
T 2y9y_A 284 RGNTLLQCLE 293 (374)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 84
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.27 E-value=0.00023 Score=74.67 Aligned_cols=48 Identities=15% Similarity=0.349 Sum_probs=43.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021 182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH 230 (440)
Q Consensus 182 ~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~ 230 (440)
......||.||-+++++++.+||. +|..||..+++||..||+..|.++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345689999999999999999996 599999999999999999998654
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.20 E-value=0.00018 Score=59.61 Aligned_cols=46 Identities=20% Similarity=0.506 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CChHHHHHHhcCCccccccchhcccc
Q 044021 186 GQWTPQEDRMLIRLVAQHGT--KKWSVIAKAMTGRVGKQCRERWYNHL 231 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~G~--~nW~~IA~~lpgRt~~QCr~Rw~~~L 231 (440)
-.||.|||..|+...++.|. +.|..||+.|.+|+..|+++||+.++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 36999999999999999986 25999999999999999999997654
No 86
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.28 E-value=5.3e-05 Score=59.66 Aligned_cols=45 Identities=22% Similarity=0.491 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhCCC--ChHHHHHHhcCCccccccchhccccc
Q 044021 187 QWTPQEDRMLIRLVAQHGTK--KWSVIAKAMTGRVGKQCRERWYNHLK 232 (440)
Q Consensus 187 ~WT~EED~~Ll~lV~k~G~~--nW~~IA~~lpgRt~~QCr~Rw~~~L~ 232 (440)
.||.|||..|+..+++-|.. -|..||..| +|++.|+.+||+.++.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 69999999999999999972 499999999 9999999999987654
No 87
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.16 E-value=0.00024 Score=59.22 Aligned_cols=43 Identities=21% Similarity=0.422 Sum_probs=39.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhc
Q 044021 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWY 228 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~ 228 (440)
...||+||-+++.++...||.. |..||..|++||..+|.+.|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~-F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKN-FGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTC-HHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-HHHHHHHcCCCCHHHHHHHHh
Confidence 4579999999999999999965 999999999999999998774
No 88
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.12 E-value=0.00031 Score=55.42 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=39.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChHHHHH-HhcCCccccccchhcc
Q 044021 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAK-AMTGRVGKQCRERWYN 229 (440)
Q Consensus 185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~-~lpgRt~~QCr~Rw~~ 229 (440)
...||+||-++..+++.+||.. |..|++ .|++|+..+|..-|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKd-f~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKD-FNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSC-HHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcc-HHHHHHHHcCCCCHHHHHHHHHh
Confidence 4579999999999999999975 999999 5999999999987753
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.02 E-value=0.00065 Score=54.99 Aligned_cols=48 Identities=19% Similarity=0.526 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------chHHHHHhcC----CCCHHHHHHHHHHhhHH
Q 044021 237 KEAWSEEEDMILIQAHKEVGN----------RWAEIARRLI----GRTENTIKNHWNATKRR 284 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~----------kW~~IAk~l~----gRT~~qcr~Rw~~llrr 284 (440)
...||.+|-..||+++..+.. .|..||..|. .||+.||+.+|..|.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999976321 4999999873 69999999999998776
No 90
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.96 E-value=0.00023 Score=57.66 Aligned_cols=49 Identities=29% Similarity=0.547 Sum_probs=39.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC------C---ChHHHHHHhc----CCccccccchhccccc
Q 044021 184 IKGQWTPQEDRMLIRLVAQHGT------K---KWSVIAKAMT----GRVGKQCRERWYNHLK 232 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~G~------~---nW~~IA~~lp----gRt~~QCr~Rw~~~L~ 232 (440)
+...||.+|..+|+++...... . .|..||..|. .||+.||+.+|.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999976411 1 4999999883 6999999999987653
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.47 E-value=0.0019 Score=53.82 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHhc-----CCccccccchhccccc
Q 044021 186 GQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-----GRVGKQCRERWYNHLK 232 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp-----gRt~~QCr~Rw~~~L~ 232 (440)
..||.||...|.+|+++|+.+ |..|+.... .|+..+.++||..+..
T Consensus 31 ~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999987 999999873 7999999999977653
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.86 E-value=0.031 Score=43.52 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc---hHHHHHhc--CCCCHHHHHHHHHHhhHH
Q 044021 236 KKEAWSEEEDMILIQAHKEVGNR---WAEIARRL--IGRTENTIKNHWNATKRR 284 (440)
Q Consensus 236 kk~~WT~EED~~Ll~lv~k~G~k---W~~IAk~l--~gRT~~qcr~Rw~~llrr 284 (440)
.+-.||+|..+.++++|.++|.. |..|.+.| +|.|..+|++|.+++...
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~ 59 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999954 89999987 599999999999876543
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.68 E-value=0.079 Score=41.19 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=39.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCC--hHHHHHHh--cCCccccccchhccc
Q 044021 183 IIKGQWTPQEDRMLIRLVAQHGTKK--WSVIAKAM--TGRVGKQCRERWYNH 230 (440)
Q Consensus 183 ikKG~WT~EED~~Ll~lV~k~G~~n--W~~IA~~l--pgRt~~QCr~Rw~~~ 230 (440)
..+-.||+|..+.++++|++.|..+ |..|.+.| +|.|..+++.+.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3466799999999999999999543 89999988 688888888776543
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.07 E-value=0.21 Score=49.62 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 237 KEAWSEEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
-+.||..|...++.++.+||. .|..||..|+|+|...|+..+.....|-
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 457999999999999999995 7999999999999999987777666554
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.52 E-value=0.48 Score=43.62 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---CchHHHHHh--cCCCCHHHHHHHHHHhhHH
Q 044021 235 IKKEAWSEEEDMILIQAHKEVG---NRWAEIARR--LIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 235 ikk~~WT~EED~~Ll~lv~k~G---~kW~~IAk~--l~gRT~~qcr~Rw~~llrr 284 (440)
-....||+.|-..|+.++.+|| .+|..|+.. |.++|...++.-+..++.+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999 579999875 7899999999877666554
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.16 E-value=0.26 Score=48.16 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHH
Q 044021 186 GQWTPQEDRMLIRLVAQHGTKKWSVIAK 213 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~ 213 (440)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999976
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=86.70 E-value=0.43 Score=46.62 Aligned_cols=27 Identities=30% Similarity=0.633 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHhC-CchHHHHH
Q 044021 238 EAWSEEEDMILIQAHKEVG-NRWAEIAR 264 (440)
Q Consensus 238 ~~WT~EED~~Ll~lv~k~G-~kW~~IAk 264 (440)
..|+.+||..||.+|-+|| +.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999 89999965
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=79.37 E-value=1.6 Score=44.57 Aligned_cols=44 Identities=16% Similarity=0.333 Sum_probs=35.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---CChHHHHHHh------------cCCccccccchh
Q 044021 184 IKGQWTPQEDRMLIRLVAQHGT---KKWSVIAKAM------------TGRVGKQCRERW 227 (440)
Q Consensus 184 kKG~WT~EED~~Ll~lV~k~G~---~nW~~IA~~l------------pgRt~~QCr~Rw 227 (440)
++..||.+||..|+-++.+||. ++|..|-..+ ..||+..+..|-
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc 285 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRG 285 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 4568999999999999999999 8899997754 346666666655
No 99
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=65.58 E-value=7 Score=35.53 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=23.5
Q ss_pred CCCCcCCCCHHHHHHH--------HHHHHHhCCCChHHHHH
Q 044021 181 NNIIKGQWTPQEDRML--------IRLVAQHGTKKWSVIAK 213 (440)
Q Consensus 181 p~ikKG~WT~EED~~L--------l~lV~k~G~~nW~~IA~ 213 (440)
|.-.+|-||+|+|+.| .+++++|| |..|..
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~ 147 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEM 147 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 4567899999999988 57888887 566654
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=59.00 E-value=16 Score=26.52 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 240 WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++ +.+..++.++-..|-.+.+||..+ |-+...++.+....+++.
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44 445566666667788999999999 889999998887766554
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=57.41 E-value=9.8 Score=32.05 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC--------chHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 247 ILIQAHKEVGN--------RWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 247 ~Ll~lv~k~G~--------kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
+|..+|.+.|+ .|..|+..|.--....+|..|..++-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 67888888885 599999998644478899999887654
No 102
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=53.30 E-value=23 Score=26.45 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHH----hCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 243 EEDMILIQAHKE----VGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 243 EED~~Ll~lv~k----~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+.+..++.+.-- .|-.|.+||..+ |-|...|+.+....+++..
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 344455555544 567899999999 9999999998877766654
No 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=51.52 E-value=19 Score=30.29 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCC--------chHHHHHhcCCCC----HHHHHHHHHHhhHH
Q 044021 246 MILIQAHKEVGN--------RWAEIARRLIGRT----ENTIKNHWNATKRR 284 (440)
Q Consensus 246 ~~Ll~lv~k~G~--------kW~~IAk~l~gRT----~~qcr~Rw~~llrr 284 (440)
-+|..+|.+.|+ .|..|++.|.--. ..++|..|..++-.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 468888888885 6999999984222 56789989887665
No 104
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=51.45 E-value=23 Score=29.10 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCC--------chHHHHHhcCC-CC---HHHHHHHHHHhhHH
Q 044021 246 MILIQAHKEVGN--------RWAEIARRLIG-RT---ENTIKNHWNATKRR 284 (440)
Q Consensus 246 ~~Ll~lv~k~G~--------kW~~IAk~l~g-RT---~~qcr~Rw~~llrr 284 (440)
-+|..+|.+.|+ .|..|++.|.- .+ ..++|..|.+++-.
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 467788888884 69999999953 22 46788888776654
No 105
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=49.11 E-value=15 Score=31.43 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC--------chHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021 247 ILIQAHKEVGN--------RWAEIARRLIGRTENTIKNHWNATKRR 284 (440)
Q Consensus 247 ~Ll~lv~k~G~--------kW~~IAk~l~gRT~~qcr~Rw~~llrr 284 (440)
+|..+|.+.|+ .|..|++.|.--....+|..|.++|-.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 57777777774 599999998544488899999877654
No 106
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.52 E-value=25 Score=29.81 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCC--------chHHHHHhcCCC-C---HHHHHHHHHHhhHH
Q 044021 246 MILIQAHKEVGN--------RWAEIARRLIGR-T---ENTIKNHWNATKRR 284 (440)
Q Consensus 246 ~~Ll~lv~k~G~--------kW~~IAk~l~gR-T---~~qcr~Rw~~llrr 284 (440)
-+|..+|.+.|+ .|..|++.|.-- + ...+|..|.+++-.
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 467788888885 599999998422 1 35778888776654
No 107
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=47.37 E-value=23 Score=26.01 Aligned_cols=42 Identities=10% Similarity=0.183 Sum_probs=31.1
Q ss_pred HHHHHHHHHH----HhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 244 EDMILIQAHK----EVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 244 ED~~Ll~lv~----k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
.+..++.+.- ..|-.+.+||..+ |-|...++.+....+++..
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3444554543 2467899999999 9999999999887766653
No 108
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=45.77 E-value=28 Score=29.62 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCC--------chHHHHHhcCC-CC---HHHHHHHHHHhhHH
Q 044021 246 MILIQAHKEVGN--------RWAEIARRLIG-RT---ENTIKNHWNATKRR 284 (440)
Q Consensus 246 ~~Ll~lv~k~G~--------kW~~IAk~l~g-RT---~~qcr~Rw~~llrr 284 (440)
.+|..+|.+.|+ .|.+|++.|.- .+ ..++|..|.++|-.
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 467788888885 69999999852 22 45778888776654
No 109
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.99 E-value=25 Score=30.47 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 243 EEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 243 EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+-|.+|+.++.+-|. .|..||+.+ |-|...|+.|++.+.....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 568889999988774 699999999 9999999999988877653
No 110
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=43.51 E-value=46 Score=25.84 Aligned_cols=42 Identities=31% Similarity=0.276 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+.++.++.++-..|-.-..||..+ |-+...|+.|....+++.
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 445566666666778899999999 899999999987766554
No 111
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=40.96 E-value=36 Score=28.97 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCC--------chHHHHHhcC--CC---CHHHHHHHHHHhhHHH
Q 044021 246 MILIQAHKEVGN--------RWAEIARRLI--GR---TENTIKNHWNATKRRQ 285 (440)
Q Consensus 246 ~~Ll~lv~k~G~--------kW~~IAk~l~--gR---T~~qcr~Rw~~llrr~ 285 (440)
.+|..+|.+.|+ .|..|+..|. .. ....+|..|..+|-.-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 468888888885 6999999984 22 2578899998877653
No 112
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=40.40 E-value=65 Score=29.22 Aligned_cols=57 Identities=16% Similarity=0.347 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCC--hHHHHHHhcCCccc---cccchhccccc-CCCCCCCCCHHHHHHHH
Q 044021 193 DRMLIRLVAQHGTKK--WSVIAKAMTGRVGK---QCRERWYNHLK-PDIKKEAWSEEEDMILI 249 (440)
Q Consensus 193 D~~Ll~lV~k~G~~n--W~~IA~~lpgRt~~---QCr~Rw~~~L~-p~ikk~~WT~EED~~Ll 249 (440)
+.++..|...-|.++ =+.|-..+.+.+.. ++-+.|..-.. |....|.||.++|+.|.
T Consensus 64 ~~Lv~~l~~e~Gi~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 64 EKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHHHHCBCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 344455557778662 13333344444433 34444444333 45678999999999987
No 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=39.10 E-value=21 Score=28.74 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCC--------chHHHHHhcCC-C---CHHHHHHHHHHhhHH
Q 044021 246 MILIQAHKEVGN--------RWAEIARRLIG-R---TENTIKNHWNATKRR 284 (440)
Q Consensus 246 ~~Ll~lv~k~G~--------kW~~IAk~l~g-R---T~~qcr~Rw~~llrr 284 (440)
-+|..+|.+.|+ .|.+|++.|.- . ...++|..|.+++-.
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 39 YALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 357777877774 69999999842 1 256778888766543
No 114
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=36.58 E-value=21 Score=31.39 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=27.9
Q ss_pred HHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHH
Q 044021 209 SVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQ 250 (440)
Q Consensus 209 ~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~ 250 (440)
..||..+.|+|+.+||..| ++ ...+|+||++.+.+
T Consensus 119 ~~vA~~ikgkt~eeir~~f------~I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTF------NI-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHT------TC-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHc------CC-CCCCCHHHHHHHHH
Confidence 6788899999999999987 22 23599999988654
No 115
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=36.07 E-value=45 Score=29.13 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCC--------chHHHHHhcC--CC---CHHHHHHHHHHhhHH
Q 044021 246 MILIQAHKEVGN--------RWAEIARRLI--GR---TENTIKNHWNATKRR 284 (440)
Q Consensus 246 ~~Ll~lv~k~G~--------kW~~IAk~l~--gR---T~~qcr~Rw~~llrr 284 (440)
.+|..+|.+.|+ .|..|+..|. .. ....+|..|..+|-.
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 467788888885 5999999984 21 257889999887755
No 116
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=35.35 E-value=67 Score=23.50 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHH
Q 044021 242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHW 278 (440)
Q Consensus 242 ~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw 278 (440)
.-|...|.+++..+|+++++.|+.+ |=+...+..+-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rkl 53 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477788999999999999999999 55555554443
No 117
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=34.77 E-value=45 Score=28.47 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCC--------chHHHHHhcC-CC----CHHHHHHHHHHhhHHH
Q 044021 246 MILIQAHKEVGN--------RWAEIARRLI-GR----TENTIKNHWNATKRRQ 285 (440)
Q Consensus 246 ~~Ll~lv~k~G~--------kW~~IAk~l~-gR----T~~qcr~Rw~~llrr~ 285 (440)
-+|..+|.+.|+ .|..|+..|. .. ....+|.+|.++|-.=
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 467888888885 6999999983 12 2578899998877654
No 118
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=34.55 E-value=23 Score=29.14 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCC--------chHHHHHhcCC-C----CHHHHHHHHHHhhHH
Q 044021 246 MILIQAHKEVGN--------RWAEIARRLIG-R----TENTIKNHWNATKRR 284 (440)
Q Consensus 246 ~~Ll~lv~k~G~--------kW~~IAk~l~g-R----T~~qcr~Rw~~llrr 284 (440)
.+|..+|.+.|+ .|..|+..|.- . ...++|..|..+|-.
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 467788888884 69999999842 1 246788888877654
No 119
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.02 E-value=20 Score=31.18 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC
Q 044021 191 QEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI 235 (440)
Q Consensus 191 EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i 235 (440)
+-|.+|++++++.|.-.|..||+.+ |-+...|+.|+.+....++
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 4578889999888888899999999 8899999999877665544
No 120
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.33 E-value=65 Score=24.86 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=31.1
Q ss_pred HHHHHHHHHHH----hCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 244 EDMILIQAHKE----VGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 244 ED~~Ll~lv~k----~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
.++.++.+.-- .|-.+..||..+ |-|...|+.+....+++..
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 34455555443 467899999999 9999999998877766654
No 121
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=32.20 E-value=67 Score=27.46 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 245 DMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 245 D~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
++.++.+.-..|-...+||..+ |-+...++.|....+++.
T Consensus 145 ~r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 145 LRMAITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3344444445577899999999 899999999887766654
No 122
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=31.96 E-value=80 Score=26.53 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 243 EEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 243 EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+-|..|+.++.+.| -.|..||+.+ |-+...|+.|.+.+.+...
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45677888888777 4699999999 8899999999988876654
No 123
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.19 E-value=95 Score=22.82 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 240 WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+|+.|- .++.++ ..|-...+||..+ |-+...++.+....+++..
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 445554 444455 6678899999999 8899999998877766543
No 124
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=30.97 E-value=91 Score=22.48 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 238 EAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 238 ~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
..+|+.|-+.|.. + ..|....+||..+ |-+...++.+...+.++..
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHC
Confidence 4577777665554 4 6677899999999 8899999998887766543
No 125
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=30.86 E-value=89 Score=24.57 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 239 AWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 239 ~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
..|+.|-+.|. ++ ..|-.-.+||..+ |-+...|+.|....+++..
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 46666655544 45 7788899999999 8899999999887766653
No 126
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=30.73 E-value=70 Score=28.09 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 242 EEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 242 ~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
.+-|.+|+.++.+.|. .|..||+.+ |-+...|+.|.+.+....
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 69 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 3567788888888774 699999999 889999999998886654
No 127
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=29.52 E-value=29 Score=30.90 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=28.2
Q ss_pred hHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHH
Q 044021 208 WSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILI 249 (440)
Q Consensus 208 W~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll 249 (440)
=..||..+.|+|+.++|..| ++. ..||+||++.+.
T Consensus 126 c~~vA~~ikgktpeeiR~~f------~I~-nd~t~eEe~~ir 160 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTF------NIV-NDFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHH------TCC-CCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHc------CCC-CCCCHHHHHHHH
Confidence 47889999999999999988 222 349999998765
No 128
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=28.70 E-value=84 Score=24.72 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHH
Q 044021 242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHW 278 (440)
Q Consensus 242 ~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw 278 (440)
.-|...|.+++.++|++.++.|+.| |=+...+..|-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477888999999999999999999 66666665443
No 129
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=28.48 E-value=93 Score=26.22 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 243 EEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 243 EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+-|..|+.++.+.|. .+..||+.+ |-+...|+.|.+.+.....
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 446678888887774 699999999 8899999999988876643
No 130
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=28.30 E-value=1e+02 Score=23.53 Aligned_cols=44 Identities=32% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 239 AWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 239 ~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
..|+.|-+.|.. + ..|-.-.+||+.+ |-+...|+.|....+++.
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666555544 4 6788899999999 899999999887776654
No 131
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=28.19 E-value=26 Score=29.97 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=37.6
Q ss_pred HHHHHHHHhCC-------CChHHHHHHh--cCC---ccccccchhcccccCCCCCCCCCHHHHHHHHHHHH
Q 044021 195 MLIRLVAQHGT-------KKWSVIAKAM--TGR---VGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHK 253 (440)
Q Consensus 195 ~Ll~lV~k~G~-------~nW~~IA~~l--pgR---t~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~ 253 (440)
+|..+|.+.|. +.|..||..| +.- .+...+..|.++|.+-- ..+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 45666666642 2599999998 221 13467888888887642 377888888876654
No 132
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=28.16 E-value=83 Score=25.77 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 246 MILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 246 ~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
..++. ....|-...+||+.+ |-|...|+.+....+++.
T Consensus 115 r~v~~-~~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 115 KEVLT-YLIRGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp HHHHH-HHTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 33444 445677899999999 899999999987766554
No 133
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=27.28 E-value=31 Score=30.12 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHhCCCC-----hHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHH
Q 044021 188 WTPQEDRMLIRLVAQHGTKK-----WSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQ 250 (440)
Q Consensus 188 WT~EED~~Ll~lV~k~G~~n-----W~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~ 250 (440)
.+.+.--.|+.+..-.+... =..||..+.|+|+.+||..| ++ ...+|+||++.+.+
T Consensus 94 id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f------~I-~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 94 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF------NI-KNDFTEEEEAQVRK 154 (159)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHT------TC-CCCSCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHc------CC-CCCCCHHHHHHHHH
Confidence 56666666777766665441 25688889999999999988 22 23589999887653
No 134
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=26.96 E-value=1.5e+02 Score=23.31 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
....|+.|-+.|..++ .|..-.+||..| |-+...|+.+...++++.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3457777766655444 788999999999 899999999998877664
No 135
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=25.82 E-value=22 Score=29.81 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC-------CChHHHHHHhcCCccccccchhcccccC
Q 044021 195 MLIRLVAQHGT-------KKWSVIAKAMTGRVGKQCRERWYNHLKP 233 (440)
Q Consensus 195 ~Ll~lV~k~G~-------~nW~~IA~~lpgRt~~QCr~Rw~~~L~p 233 (440)
.|..+|.+.|. +.|..||..|.--.+..++..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 57777777653 2599999999444477788888887764
No 136
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=25.72 E-value=1.1e+02 Score=25.09 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
.+..++.++-..|-...+||..+ |-+...++.|....+++..
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 44556666667788999999999 8999999988876655543
No 137
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.11 E-value=1.4e+02 Score=20.79 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 245 DMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 245 D~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+..++.+ -..|-.-.+||..+ |-+...++.+.....++..
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHC
Confidence 3455555 36688899999999 8999999999887776543
No 138
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=23.99 E-value=1.1e+02 Score=25.05 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHH
Q 044021 241 SEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKN 276 (440)
Q Consensus 241 T~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~ 276 (440)
|+.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66777788888899999999999999 666665543
No 139
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.59 E-value=1.1e+02 Score=26.89 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+.++.++.+.-..|-...+||+.+ |-|...|+.+....+++.
T Consensus 190 ~~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 190 EREKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 444555555555677899999999 899999998887666554
No 140
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=23.24 E-value=1.3e+02 Score=25.19 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 243 EEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 243 EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+-|..|+.++.+.|. .+..||+.+ |-+...|+.|.+.+.....
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 51 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGI 51 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCC
Confidence 346778888888774 699999999 8899999999988876654
No 141
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=23.10 E-value=1e+02 Score=24.34 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHH
Q 044021 241 SEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNH 277 (440)
Q Consensus 241 T~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~R 277 (440)
.+-|.+.|.++++++|++.++.|+.| |=+...+..|
T Consensus 39 ~~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyrK 74 (81)
T 1umq_A 39 DRVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQRI 74 (81)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHH
Confidence 34567788899999999999999999 6666655443
No 142
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.78 E-value=59 Score=28.61 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC
Q 044021 191 QEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI 235 (440)
Q Consensus 191 EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i 235 (440)
+-|..|++++.+.|...|..||+.+ |-+...|+.|..++...++
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 4566788888888877899999999 7899999998877665544
No 143
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.30 E-value=3.3e+02 Score=22.40 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc------ccCCCC----CCCCCHHHHHHHHHHHHHh
Q 044021 186 GQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH------LKPDIK----KEAWSEEEDMILIQAHKEV 255 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~------L~p~ik----k~~WT~EED~~Ll~lv~k~ 255 (440)
...|.++-..++.++. .|. ....||..+ |.+...++ ||.+. +.+... ....++++...|++++.+.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~-s~~~iA~~l-gis~~TV~-rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV-RPCDISRQL-RVSHGCVS-KILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC-CHHHHHHHH-TCCHHHHH-HHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHH-CcCHHHHH-HHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 4689999888888884 464 489999998 65554443 33322 222211 2347888888888888765
Q ss_pred CC-chHHHHHhc
Q 044021 256 GN-RWAEIARRL 266 (440)
Q Consensus 256 G~-kW~~IAk~l 266 (440)
+. .-..|+..+
T Consensus 107 ~~~s~~~i~~~l 118 (149)
T 1k78_A 107 PTMFAWEIRDRL 118 (149)
T ss_dssp TTCCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 32 233455444
No 144
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=22.11 E-value=1.3e+02 Score=25.60 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 243 EEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 243 EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
+-|..|+.++.+.| -.++.||+.+ |-+...|+.|.+.+.+...
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 53 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGI 53 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45667888888777 4799999999 8899999999988876654
No 145
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.96 E-value=1.2e+02 Score=23.32 Aligned_cols=44 Identities=27% Similarity=0.176 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021 240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286 (440)
Q Consensus 240 WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~ 286 (440)
.|+.|-+.| .++ ..|-.-.+||..| |-+...|+.|....+++..
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 455555444 444 6788899999999 8999999999887766543
No 146
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=21.82 E-value=3.1e+02 Score=21.92 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc-CC-----CCCCCCCHHHHHHHHHHHHHhCCch
Q 044021 186 GQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK-PD-----IKKEAWSEEEDMILIQAHKEVGNRW 259 (440)
Q Consensus 186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~-p~-----ikk~~WT~EED~~Ll~lv~k~G~kW 259 (440)
...|.++-..++.++. -|. .-..||..+ |.+...++. |.+... .+ ......|++++..|+.+...-+-.-
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~l-gis~~Tv~r-~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKI-SRSRHCIRV-YLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHH-TCCHHHHHH-HHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHH-CcCHHHHHH-HHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 3578888888888774 454 379999998 666665543 322211 11 1223578888888887733222345
Q ss_pred HHHHHhcC-CCCHHHHHHHH
Q 044021 260 AEIARRLI-GRTENTIKNHW 278 (440)
Q Consensus 260 ~~IAk~l~-gRT~~qcr~Rw 278 (440)
..|+..++ .-+...|....
T Consensus 81 ~~i~~~lg~~~s~~tV~r~l 100 (141)
T 1u78_A 81 RDIRNELQLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHTTCCSCHHHHHHHH
T ss_pred HHHHHHHCCCccHHHHHHHH
Confidence 78888883 15666665444
No 147
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=21.20 E-value=45 Score=28.42 Aligned_cols=42 Identities=24% Similarity=0.117 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+.++.++.+.-..|-.+.+||..+ |-+...+++|....+++.
T Consensus 138 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 138 EAQRALIERAFFGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HHHHHHHHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344555555556778899999999 889999999987766654
No 148
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=20.48 E-value=1.7e+02 Score=23.98 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021 240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285 (440)
Q Consensus 240 WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~ 285 (440)
+++. +..++.++-..|-....||..+ |-|...++.+.....++.
T Consensus 23 L~~~-~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 23 LTDK-QMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp SCHH-HHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4444 4556666667788999999999 899999999887666544
Done!