Query 044024
Match_columns 296
No_of_seqs 27 out of 29
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 18:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e2f_A Diapausin; Ca-channel b 49.5 5.6 0.00019 27.8 1.0 14 181-194 10-24 (41)
2 3kdg_A DNA mismatch repair pro 24.2 45 0.0016 27.7 2.7 29 235-263 151-179 (197)
3 3ncv_A DNA mismatch repair pro 22.1 49 0.0017 28.5 2.6 38 226-263 157-202 (220)
4 1upt_B Golgi autoantigen, golg 19.6 61 0.0021 24.1 2.3 23 225-251 10-32 (60)
5 2ao6_B NCOA-2, 14-MER fragment 17.4 59 0.002 20.8 1.5 22 227-251 3-24 (26)
6 2bpt_B Nucleoporin NUP1; nucle 16.8 68 0.0023 22.0 1.8 32 53-90 4-35 (39)
7 3e0j_B DNA polymerase subunit 16.7 23 0.00079 29.5 -0.6 29 222-250 15-45 (144)
8 1wdy_A 2-5A-dependent ribonucl 11.1 1.1E+02 0.0037 23.7 1.8 22 127-148 263-284 (285)
9 4g8k_A 2-5A-dependent ribonucl 11.1 98 0.0033 25.5 1.6 15 131-145 315-329 (337)
10 1dj8_A HDEA, protein HNS-depen 10.9 1E+02 0.0035 23.9 1.6 21 162-184 48-68 (89)
No 1
>2e2f_A Diapausin; Ca-channel blocker, antifungal peptide, structural genomics, antifungal protein; NMR {Gastrophysa atrocyanea}
Probab=49.51 E-value=5.6 Score=27.80 Aligned_cols=14 Identities=36% Similarity=1.170 Sum_probs=11.3
Q ss_pred hhccCCchh-HHhHH
Q 044024 181 ACGKVDPVK-ECCQQ 194 (296)
Q Consensus 181 AC~~VDPvk-ECC~~ 194 (296)
-|+.|||-| ||||-
T Consensus 10 vcsri~pekdeccra 24 (41)
T 2e2f_A 10 VCPRIVPERHECCRA 24 (41)
T ss_dssp STTSCSTTTHHHHHH
T ss_pred cccCcCcchhHHHHh
Confidence 589999987 78873
No 2
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=24.19 E-value=45 Score=27.74 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=25.7
Q ss_pred ccCCcchhhHHhhhhhcCcCCcccccCCC
Q 044024 235 SKLDPSSANGVLRALSNCKVNKASKLPAR 263 (296)
Q Consensus 235 ~KL~p~~An~~lR~LSnCkVNkvCPL~F~ 263 (296)
.+|+.+++++.+|.|..|+.-..||-.=|
T Consensus 151 ~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRP 179 (197)
T 3kdg_A 151 RHLRNDEIKALLDDLRSTSDPFTCPHGRP 179 (197)
T ss_dssp CCCCHHHHHHHHHHHHHSSCTTBCTTSCB
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcCCCCCc
Confidence 58999999999999999999999996533
No 3
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=22.13 E-value=49 Score=28.45 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=31.0
Q ss_pred hhHHHHHHh--------ccCCcchhhHHhhhhhcCcCCcccccCCC
Q 044024 226 KSIVFRWLA--------SKLDPSSANGVLRALSNCKVNKASKLPAR 263 (296)
Q Consensus 226 K~VVlrwLa--------~KL~p~~An~~lR~LSnCkVNkvCPL~F~ 263 (296)
..-++.|+| .+|+.+++++.+|.|..|+.-..||-.=|
T Consensus 157 ~~~~~as~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRP 202 (220)
T 3ncv_A 157 ENRILATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRP 202 (220)
T ss_dssp HHHHHHHHTTCSSSCSSCCCCHHHHHHHHHHHHTSTTTTBCTTSCB
T ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhCCCCCcCCCCCc
Confidence 344667776 57999999999999999999999996533
No 4
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=19.58 E-value=61 Score=24.11 Aligned_cols=23 Identities=4% Similarity=0.456 Sum_probs=17.4
Q ss_pred chhHHHHHHhccCCcchhhHHhhhhhc
Q 044024 225 CKSIVFRWLASKLDPSSANGVLRALSN 251 (296)
Q Consensus 225 CK~VVlrwLa~KL~p~~An~~lR~LSn 251 (296)
=|||+++|+-.+ +.+++++.|+.
T Consensus 10 LrNVl~~ym~g~----~~~~m~kaI~a 32 (60)
T 1upt_B 10 LRKVLFEYMMGR----ETKTMAKVITT 32 (60)
T ss_dssp HHHHHHHHHTTS----SHHHHHHHHHH
T ss_pred HHHHHHHHHHcc----cHHHHHHHHHH
Confidence 389999999876 66667766654
No 5
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=17.43 E-value=59 Score=20.76 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=16.6
Q ss_pred hHHHHHHhccCCcchhhHHhhhhhc
Q 044024 227 SIVFRWLASKLDPSSANGVLRALSN 251 (296)
Q Consensus 227 ~VVlrwLa~KL~p~~An~~lR~LSn 251 (296)
|-.+||| |+-+..|.++|-|-+
T Consensus 3 ~~LLRyL---LDkDdgnaalryllg 24 (26)
T 2ao6_B 3 NALLRYL---LDKDDGNAALRYLLG 24 (26)
T ss_pred cHHHHHH---HccccchHHHHHHhc
Confidence 5678888 566888999997743
No 6
>2bpt_B Nucleoporin NUP1; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae}
Probab=16.80 E-value=68 Score=21.96 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=14.7
Q ss_pred CCCCCCCccccccccccccchhhhhhhccchhhhhhhh
Q 044024 53 ISNSSLPKLSGLCTLNFSAAESFVSTTATDCWASFAPY 90 (296)
Q Consensus 53 f~n~~~PkLsG~C~lNFsA~~~~m~~TA~DC~~~fApl 90 (296)
|+-+++|+ .|||-+.+=|+.||.+-.-|---|
T Consensus 4 ftpstvpn------infsglnggitntatnalrpsdif 35 (39)
T 2bpt_B 4 FTPSTVPN------INFSGLNGGITNTATNALRPSDIF 35 (39)
T ss_dssp CCCCSSCC------CCCC---------CCC-CCGGGTT
T ss_pred ccccccCc------ccccccccccccccccccCchhcc
Confidence 56677776 599999999999998766554333
No 7
>3e0j_B DNA polymerase subunit delta-3; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=16.67 E-value=23 Score=29.53 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=21.3
Q ss_pred cccchhHHHHHHhccCCc--chhhHHhhhhh
Q 044024 222 IDDCKSIVFRWLASKLDP--SSANGVLRALS 250 (296)
Q Consensus 222 v~DCK~VVlrwLa~KL~p--~~An~~lR~LS 250 (296)
.++-|-|=+||||+.|+- ..||+||...-
T Consensus 15 ~de~k~VTYr~LSr~l~VhvN~AK~mL~ef~ 45 (144)
T 3e0j_B 15 TDQNKIVTYKWLSYTLGVHVNQAKQMLYDYV 45 (144)
T ss_dssp TTTCCCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HhCCceEEHHHHHHHhCCCHHHHHHHHHHHH
Confidence 455666779999998764 67888885543
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=11.14 E-value=1.1e+02 Score=23.67 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhcCcccccccc
Q 044024 127 HCLSDFEKILETQGANRNLKTI 148 (296)
Q Consensus 127 ~C~SDi~~iL~sqGAn~~l~~i 148 (296)
+-..|+.++|..+||+.++..+
T Consensus 263 ~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 263 LKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp TTCHHHHHHHHHHSSCSCCSSC
T ss_pred cCcHHHHHHHHHcCCCCCcccc
Confidence 3456888999999998877653
No 9
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=11.07 E-value=98 Score=25.51 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=6.7
Q ss_pred HHHHHHHhcCccccc
Q 044024 131 DFEKILETQGANRNL 145 (296)
Q Consensus 131 Di~~iL~sqGAn~~l 145 (296)
||.++|.++||+-++
T Consensus 315 ~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 315 SLVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHHHHTTCCC--
T ss_pred HHHHHHHHCcCCCCC
Confidence 455555555555443
No 10
>1dj8_A HDEA, protein HNS-dependent expression A; alpha helical, structural protein; 2.00A {Escherichia coli} SCOP: a.57.1.1 PDB: 1bg8_A
Probab=10.92 E-value=1e+02 Score=23.87 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=18.6
Q ss_pred cccchhhhhhhhchhHHHhhhcc
Q 044024 162 PVVDANKFESIVDSSKILTACGK 184 (296)
Q Consensus 162 PV~dV~~FE~~VdtSKLL~AC~~ 184 (296)
+|.|++++|.+ +-|+.+.|.+
T Consensus 48 ~vvD~~~~e~v--~P~vve~Ckk 68 (89)
T 1dj8_A 48 AVLDVQGIATV--TPAIVQACTQ 68 (89)
T ss_dssp CCCCHHHHHHH--HHHHHHHHHT
T ss_pred ceeehhHHHHh--hHHHHHHHHh
Confidence 57899999988 8999999986
Done!