Query 044024
Match_columns 296
No_of_seqs 27 out of 29
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 18:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044024.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044024hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r5la1 a.5.3.1 (A:25-90) Alph 29.6 23 0.0017 23.8 3.4 49 197-250 1-50 (66)
2 d1auaa1 a.5.3.1 (A:4-96) N-ter 20.5 23 0.0017 25.2 2.0 22 227-248 53-75 (93)
3 d1olma1 a.5.3.1 (A:1-75) Super 19.4 26 0.0019 23.4 2.0 22 227-248 36-58 (75)
4 d2cvla1 d.79.1.1 (A:1-124) Put 18.1 28 0.0021 24.7 2.1 42 108-151 29-73 (124)
5 d1wdya_ d.211.1.1 (A:) RNase L 15.9 29 0.0021 25.3 1.7 24 125-148 261-284 (285)
6 d1qd9a_ d.79.1.1 (A:) Purine r 10.3 74 0.0054 22.4 2.5 28 123-152 47-74 (124)
7 d1k1aa_ d.211.1.1 (A:) bcl-3 { 9.4 66 0.0048 21.4 1.8 21 126-146 186-206 (228)
8 d1go3f_ a.60.8.2 (F:) RNA poly 9.3 58 0.0043 23.7 1.6 26 230-256 41-66 (107)
9 d1xgsa1 a.4.5.25 (A:195-271) M 8.5 42 0.0031 22.9 0.4 23 230-252 43-65 (77)
10 d1myoa_ d.211.1.1 (A:) Myotrop 8.3 80 0.0058 21.1 1.9 19 129-147 80-98 (118)
No 1
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.61 E-value=23 Score=23.78 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCcccccchhHHHHHH-hccCCcchhhHHhhhhh
Q 044024 197 QNAILDAARKIAMDGMVSMPENSTRIDDCKSIVFRWL-ASKLDPSSANGVLRALS 250 (296)
Q Consensus 197 Q~AI~eAA~~Is~~~~~~~~~~s~~v~DCK~VVlrwL-a~KL~p~~An~~lR~LS 250 (296)
|.||.|-=..|+..+...++. ..+| ...+||| |+|.+.+.|.+|++.--
T Consensus 1 q~aL~elR~~l~~~~~p~lp~---~~dD--~~LlrFLRarkf~~~ka~~~l~~y~ 50 (66)
T d1r5la1 1 QPGLAALRRRAREAGVPLAPL---PLTD--SFLLRFLRARDFDLDLAWRLLKNYY 50 (66)
T ss_dssp CTTHHHHHHHHHHHTCCCSSS---CCCH--HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcCCC---CCCH--HHHHHHHHHccCCHHHHHHHHHHHH
Confidence 345555544554433333332 2233 6889999 67899999999998753
No 2
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.48 E-value=23 Score=25.21 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.6
Q ss_pred hHHHHHH-hccCCcchhhHHhhh
Q 044024 227 SIVFRWL-ASKLDPSSANGVLRA 248 (296)
Q Consensus 227 ~VVlrwL-a~KL~p~~An~~lR~ 248 (296)
..++||| |+|.+.+.|.+||+.
T Consensus 53 ~~llRfLrAr~fd~~~a~~ml~~ 75 (93)
T d1auaa1 53 STLLRFLRARKFDVQLAKEMFEN 75 (93)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHH
Confidence 6899999 789999999999975
No 3
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.45 E-value=26 Score=23.40 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=19.2
Q ss_pred hHHHHHH-hccCCcchhhHHhhh
Q 044024 227 SIVFRWL-ASKLDPSSANGVLRA 248 (296)
Q Consensus 227 ~VVlrwL-a~KL~p~~An~~lR~ 248 (296)
..++||| |+|.+.+.|.+|||.
T Consensus 36 ~~LlRFLrAr~fdv~kA~~ml~~ 58 (75)
T d1olma1 36 YFLLRWLRARSFDLQKSEAMLRK 58 (75)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Confidence 6789999 679999999999974
No 4
>d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]}
Probab=18.05 E-value=28 Score=24.75 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=28.8
Q ss_pred hhhccCCccceecc---ccchhhhHHHHHHHHHhcCccccccccccc
Q 044024 108 MGQYSKYSGMLSLN---TTNAQHCLSDFEKILETQGANRNLKTICSI 151 (296)
Q Consensus 108 ~Gq~Sk~s~~LaLn---~t~A~~C~SDi~~iL~sqGAn~~l~~iCSv 151 (296)
-||-+.+.+...+. .+.+..||..+.++|.+.|++ +..+..+
T Consensus 29 SGq~~~d~~~~~~~~~~~~Q~~~~l~~i~~~L~~~G~~--~~dvvk~ 73 (124)
T d2cvla1 29 SGQIPLAPDGSLVEGDIRVQTERVMENLKAVLEAAGSG--LSRVVQT 73 (124)
T ss_dssp EEECSBCTTSCBCCSSHHHHHHHHHHHHHHHHHHTTCC--GGGEEEE
T ss_pred EEecCCCCCcccccCCHhHHHHHHHHHHHHHHHHhcCC--ccccEEE
Confidence 45555554444444 457889999999999999995 4455443
No 5
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.88 E-value=29 Score=25.34 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHhcCcccccccc
Q 044024 125 AQHCLSDFEKILETQGANRNLKTI 148 (296)
Q Consensus 125 A~~C~SDi~~iL~sqGAn~~l~~i 148 (296)
+.+.-.++.++|.+.||+-|.+.+
T Consensus 261 ~~~~~~eiv~~Ll~~GAd~n~~d~ 284 (285)
T d1wdya_ 261 VELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp HHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred HHcCCHHHHHHHHHCCCCCCcccC
Confidence 455678899999999999887654
No 6
>d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus subtilis [TaxId: 1423]}
Probab=10.34 E-value=74 Score=22.37 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=23.3
Q ss_pred cchhhhHHHHHHHHHhcCcccccccccccc
Q 044024 123 TNAQHCLSDFEKILETQGANRNLKTICSIH 152 (296)
Q Consensus 123 t~A~~C~SDi~~iL~sqGAn~~l~~iCSv~ 152 (296)
..+..+|.-|+.+|.+.|+ ++..++.++
T Consensus 47 ~Q~~~~l~ni~~iL~~aG~--~~~div~~~ 74 (124)
T d1qd9a_ 47 EQTHQVFSNLKAVLEEAGA--SFETVVKAT 74 (124)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCC--CcccCceEE
Confidence 4788999999999999888 566777765
No 7
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.43 E-value=66 Score=21.42 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHhcCcccccc
Q 044024 126 QHCLSDFEKILETQGANRNLK 146 (296)
Q Consensus 126 ~~C~SDi~~iL~sqGAn~~l~ 146 (296)
.+...|+.++|.++||+-++.
T Consensus 186 ~~g~~~~v~~Ll~~Gad~n~~ 206 (228)
T d1k1aa_ 186 GRGLLPLVRTLVRSGADSSLK 206 (228)
T ss_dssp HHTCHHHHHHHHHTTCCTTCC
T ss_pred HcCCHHHHHHHHHCCCCCCCC
Confidence 344578999999999987654
No 8
>d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.29 E-value=58 Score=23.74 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=20.5
Q ss_pred HHHHhccCCcchhhHHhhhhhcCcCCc
Q 044024 230 FRWLASKLDPSSANGVLRALSNCKVNK 256 (296)
Q Consensus 230 lrwLa~KL~p~~An~~lR~LSnCkVNk 256 (296)
++|.| |++|+.|.++.+.|.+.++.+
T Consensus 41 ~~~fa-k~~~e~~~~l~~~L~~~~~~~ 66 (107)
T d1go3f_ 41 LQKFA-KLDKEEAKKLVEELISLGIDE 66 (107)
T ss_dssp HHHHC-CSCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHH-cCCHHHHHHHHHHHHhcCCCH
Confidence 45666 679999999999999876543
No 9
>d1xgsa1 a.4.5.25 (A:195-271) Methionine aminopeptidase, insert domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.49 E-value=42 Score=22.92 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=18.8
Q ss_pred HHHHhccCCcchhhHHhhhhhcC
Q 044024 230 FRWLASKLDPSSANGVLRALSNC 252 (296)
Q Consensus 230 lrwLa~KL~p~~An~~lR~LSnC 252 (296)
.|||..+.+...++-+|+.|..-
T Consensus 43 ~RwL~~~~~~~k~~~~L~~lv~~ 65 (77)
T d1xgsa1 43 YRWLQNDMPEGQLKLALKTLEKA 65 (77)
T ss_dssp SGGGTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC
Confidence 48999988888889999888653
No 10
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.34 E-value=80 Score=21.11 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCccccccc
Q 044024 129 LSDFEKILETQGANRNLKT 147 (296)
Q Consensus 129 ~SDi~~iL~sqGAn~~l~~ 147 (296)
-.|+.++|.++||+-++.+
T Consensus 80 ~~~~v~~Ll~~Gad~~~~d 98 (118)
T d1myoa_ 80 HVSCVKLLLSKGADKTVKG 98 (118)
T ss_dssp CCHHHHHHHTTCCCSSSSS
T ss_pred chhhhhhhhcccccceeeC
Confidence 4689999999999877654
Done!