BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044025
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 103 bits (258), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/87 (59%), Positives = 66/87 (75%), Gaps = 9/87 (10%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGMDN 108
KEA WAIS+AT GGSH+ I++LVS+G IKPLCDLL+C D RIVTVCL G K+G +
Sbjct: 389 KEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETD 448
Query: 109 R------VNVYTQMINECDGLDKIENL 129
+ VNV++QMI+E +GL+KIENL
Sbjct: 449 KTLAAGDVNVFSQMIDEAEGLEKIENL 475
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 103 bits (257), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/87 (59%), Positives = 66/87 (75%), Gaps = 9/87 (10%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGMDN 108
KEA WAIS+AT GGSH+ I++LVS+G IKPLCDLL+C D RIVTVCL G K+G +
Sbjct: 351 KEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETD 410
Query: 109 R------VNVYTQMINECDGLDKIENL 129
+ VNV++QMI+E +GL+KIENL
Sbjct: 411 KTLAAGDVNVFSQMIDEAEGLEKIENL 437
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGMDN 108
KEA WAI++AT GGS E I++LV G IKPLCDLL D +IV V LNG +LG
Sbjct: 333 KEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 392
Query: 109 R------VNVYTQMINECDGLDKIENL 129
+N Y +I E GLDKIE L
Sbjct: 393 AKRNGTGINPYCALIEEAYGLDKIEFL 419
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGMDN 108
KEA WAI++AT GGS E I++LV G IKPLCDLL D +IV V LNG +LG
Sbjct: 336 KEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 395
Query: 109 R------VNVYTQMINECDGLDKIENL 129
+N Y +I E GLDKIE L
Sbjct: 396 AKRNGTGINPYCALIEEAYGLDKIEFL 422
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 436 GETEKLSI---MIEECGGLDKIEAL 457
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 362 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 421
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 422 GETEKLSI---MIEECGGLDKIEAL 443
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 436 GETEKLSI---MIEECGGLDKIEAL 457
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 436 GETEKLSI---MIEECGGLDKIEAL 457
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 360 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 419
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 420 GETEKLSI---MIEECGGLDKIEAL 441
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 391
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 392 GETEKLSI---MIEECGGLDKIEAL 413
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 326 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 385
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 386 GETEKLSI---MIEECGGLDKIEAL 407
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 321 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 380
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 381 GETEKLSI---MIEECGGLDKIEAL 402
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 325 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 384
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 385 GETEKLSI---MIEECGGLDKIEAL 406
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 321 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 380
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 381 GETEKLSI---MIEECGGLDKIEAL 402
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 325 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 384
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 385 GETEKLSI---MIEECGGLDKIEAL 406
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 326 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 385
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 386 GETEKLSI---MIEECGGLDKIEAL 407
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 326 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 385
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 386 GETEKLSI---MIEECGGLDKIEAL 407
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 352 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 411
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 412 GETEKLSI---MIEECGGLDKIEAL 433
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
KEA WA+++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 327 KEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKL 386
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 387 GETEKLSI---MIEECGGLDKIEAL 408
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 10/85 (11%)
Query: 52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
K A WAI++ T GG+ E I +LV G I+PL +LL D +I+ V L+ KL
Sbjct: 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 454
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
G ++++ MI EC GLDKIE L
Sbjct: 455 GETEKLSI---MIEECGGLDKIEAL 476
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52 KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
KEA WAIS+A+ GG I++LVSQG IKPLCDLL +D RI+ V L+ K+G
Sbjct: 315 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 374
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
++ +N I + G++KI N
Sbjct: 375 ADKEARGLNINENADFIEKAGGMEKIFN 402
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52 KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
KEA WAIS+A+ GG I++LVSQG IKPLCDLL +D RI+ V L+ K+G
Sbjct: 314 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 373
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
++ +N I + G++KI N
Sbjct: 374 ADKEARGLNINENADFIEKAGGMEKIFN 401
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52 KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
KEA WAIS+A+ GG I++LVSQG IKPLCDLL +D RI+ V L+ K+G
Sbjct: 315 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 374
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
++ +N I + G++KI N
Sbjct: 375 ADKEARGLNINENADFIEKAGGMEKIFN 402
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52 KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
KEA WAIS+A+ GG I++LVSQG IKPLCDLL +D RI+ V L+ K+G
Sbjct: 313 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKMGE 372
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
++ +N I + G++KI N
Sbjct: 373 ADKEARGLNINENADFIEKAGGMEKIFN 400
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52 KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
KEA WAIS+A+ GG I++LVSQG IKPLCDLL +D RI+ V L+ K+G
Sbjct: 313 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 372
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
++ +N I + G++KI N
Sbjct: 373 ADKEARGLNINENADFIEKAGGMEKIFN 400
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52 KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
KEA WAIS+A+ GG I++LVSQG IKPLCDLL +D RI+ V L+ K+G
Sbjct: 314 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 373
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
++ +N I + G++KI N
Sbjct: 374 ADKEARGLNINENADFIEKAGGMEKIFN 401
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 58.9 bits (141), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 11/88 (12%)
Query: 52 KEATWAISSATYGGSH--EHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
KEA WAIS+A+ GG + I++LVSQG IKPLCDLL +D RI+ V L+ K+G
Sbjct: 401 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
++ +N I + G++KI N
Sbjct: 461 ADKEARGLNINENADFIEKAGGMEKIFN 488
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 51 IKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRV 110
++EA WA+S+ GG +E IQ ++ G + L LL +++I+ L +
Sbjct: 113 LQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-- 169
Query: 111 NVYTQMINECDGLDKIENL 129
N Q + E L+K+E L
Sbjct: 170 NEQKQAVKEAGALEKLEQL 188
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 IKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCL 98
++EA WA+S+ GG +E IQ ++ G + L LL +++I+ L
Sbjct: 71 LQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 51 IKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRV 110
++EA WA+S+ GG +E IQ ++ G + L LL +++I+ L +
Sbjct: 155 LQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-- 211
Query: 111 NVYTQMINECDGLDKIENL 129
N Q + E L+K+E L
Sbjct: 212 NEQKQAVKEAGALEKLEQL 230
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 IKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCL 98
++EA WA+S+ GG +E IQ ++ G + L LL +++I+ L
Sbjct: 71 LQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 IKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCL 98
++EA WA+S+ GG +E IQ ++ G + L LL +++I+ L
Sbjct: 113 LQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 51 IKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRV 110
++EA WA+S+ GG +E IQ ++ G + L LL +++I+ L +
Sbjct: 113 LQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-- 169
Query: 111 NVYTQMINECDGLDKIENL 129
N Q + E L+K+E L
Sbjct: 170 NEQKQAVKEAGALEKLEQL 188
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 IKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCL 98
++EA WA+S+ GG +E IQ ++ G + L LL +++I+ L
Sbjct: 71 LQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 IKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCL 98
++EA WA+S+ GG +E IQ ++ G + L LL +++I+ L
Sbjct: 71 LQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 IKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCL 98
++EA WA+S+ GG +E IQ ++ G + L LL +++I+ L
Sbjct: 113 LQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159
>pdb|1VB3|A Chain A, Crystal Structure Of Threonine Synthase From Escherichia
Coli
Length = 428
Score = 25.4 bits (54), Expect = 9.9, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 57 AISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS-DQRIVTVCLNGN 101
A++ A YG + + L +G I PL + L C+ I TV ++G+
Sbjct: 140 AVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDGD 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,174,145
Number of Sequences: 62578
Number of extensions: 91687
Number of successful extensions: 264
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 65
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)