Query 044025
Match_columns 129
No_of_seqs 117 out of 1029
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 3E-31 6.6E-36 214.8 11.3 114 16-129 341-465 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 7.1E-29 1.5E-33 192.8 7.0 121 8-129 339-475 (526)
3 KOG0166 Karyopherin (importin) 99.8 9.1E-21 2E-25 154.1 8.7 120 4-128 201-328 (514)
4 COG5064 SRP1 Karyopherin (impo 99.7 3.8E-18 8.3E-23 133.2 6.2 112 11-127 214-333 (526)
5 PLN03200 cellulose synthase-in 99.7 7.2E-16 1.6E-20 140.3 11.0 120 5-127 617-741 (2102)
6 PLN03200 cellulose synthase-in 99.5 1.8E-13 3.9E-18 125.0 12.4 115 10-127 417-536 (2102)
7 cd00020 ARM Armadillo/beta-cat 99.4 3.3E-12 7.2E-17 84.3 10.4 99 6-105 16-119 (120)
8 cd00020 ARM Armadillo/beta-cat 99.3 1.6E-11 3.5E-16 80.9 9.9 95 30-127 2-97 (120)
9 KOG4224 Armadillo repeat prote 99.3 7.6E-12 1.6E-16 98.9 8.8 115 9-128 178-299 (550)
10 PF00514 Arm: Armadillo/beta-c 99.0 5.6E-10 1.2E-14 61.9 4.7 37 27-63 4-41 (41)
11 KOG4224 Armadillo repeat prote 99.0 1.8E-09 4E-14 85.6 8.9 119 3-126 214-338 (550)
12 PF05804 KAP: Kinesin-associat 98.7 3.1E-07 6.6E-12 78.5 12.1 110 14-128 265-379 (708)
13 PF04826 Arm_2: Armadillo-like 98.6 9.4E-07 2E-11 67.3 10.7 53 13-65 29-85 (254)
14 PF00514 Arm: Armadillo/beta-c 98.5 2.3E-07 5.1E-12 51.2 4.6 40 66-105 1-40 (41)
15 PF05804 KAP: Kinesin-associat 98.5 9.3E-07 2E-11 75.6 10.2 116 3-126 296-416 (708)
16 smart00185 ARM Armadillo/beta- 98.5 4.8E-07 1E-11 49.2 4.7 36 28-63 5-41 (41)
17 PF10508 Proteasom_PSMB: Prote 98.4 2E-06 4.4E-11 71.1 10.4 113 12-128 133-250 (503)
18 PF13513 HEAT_EZ: HEAT-like re 98.3 2.5E-06 5.3E-11 49.8 4.9 45 16-61 6-55 (55)
19 PF13513 HEAT_EZ: HEAT-like re 98.2 3.3E-06 7.1E-11 49.2 5.0 54 49-104 1-55 (55)
20 PF04826 Arm_2: Armadillo-like 98.1 4.1E-05 8.9E-10 58.4 9.3 94 9-105 107-204 (254)
21 PF10508 Proteasom_PSMB: Prote 98.1 5.1E-05 1.1E-09 62.8 10.5 108 16-127 96-208 (503)
22 KOG2160 Armadillo/beta-catenin 98.0 0.00012 2.7E-09 57.7 11.8 97 27-126 116-214 (342)
23 smart00185 ARM Armadillo/beta- 97.9 2.7E-05 5.8E-10 42.1 4.6 38 68-105 3-40 (41)
24 PF13646 HEAT_2: HEAT repeats; 97.9 2.8E-05 6.1E-10 48.8 4.5 57 37-105 1-59 (88)
25 KOG4199 Uncharacterized conser 97.8 0.00027 5.8E-09 56.1 9.9 98 27-127 181-289 (461)
26 PF03224 V-ATPase_H_N: V-ATPas 97.7 0.00025 5.4E-09 55.2 8.2 107 19-128 172-290 (312)
27 PF13646 HEAT_2: HEAT repeats; 97.7 0.00019 4.1E-09 44.9 6.2 74 10-102 13-88 (88)
28 KOG4199 Uncharacterized conser 97.6 0.00066 1.4E-08 54.0 9.0 111 13-128 205-335 (461)
29 KOG0168 Putative ubiquitin fus 97.6 0.00014 3E-09 63.1 5.3 85 34-124 210-297 (1051)
30 KOG1048 Neural adherens juncti 97.5 0.00028 6E-09 60.4 7.1 90 36-127 234-325 (717)
31 KOG1048 Neural adherens juncti 97.5 0.00057 1.2E-08 58.5 8.3 110 14-128 535-661 (717)
32 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0023 4.9E-08 41.9 7.4 82 19-104 8-94 (97)
33 PF02985 HEAT: HEAT repeat; I 97.2 0.00047 1E-08 35.6 3.2 28 36-63 1-29 (31)
34 PRK09687 putative lyase; Provi 97.0 0.0032 6.9E-08 48.6 7.1 60 35-104 159-219 (280)
35 PF14668 RICTOR_V: Rapamycin-i 96.9 0.0057 1.2E-07 38.1 6.5 66 51-121 4-70 (73)
36 KOG2160 Armadillo/beta-catenin 96.8 0.018 3.9E-07 45.7 9.9 89 15-104 142-238 (342)
37 PRK09687 putative lyase; Provi 96.6 0.0079 1.7E-07 46.4 6.8 64 34-104 53-118 (280)
38 KOG4500 Rho/Rac GTPase guanine 96.6 0.0092 2E-07 49.0 7.1 94 31-127 83-184 (604)
39 cd00256 VATPase_H VATPase_H, r 96.5 0.023 4.9E-07 46.5 8.9 108 19-128 166-284 (429)
40 PF14668 RICTOR_V: Rapamycin-i 96.4 0.026 5.6E-07 35.1 6.8 62 14-77 3-70 (73)
41 KOG1293 Proteins containing ar 96.2 0.13 2.8E-06 44.0 11.7 94 11-105 431-532 (678)
42 PF01602 Adaptin_N: Adaptin N 96.2 0.017 3.6E-07 47.3 6.4 80 17-104 99-179 (526)
43 KOG1293 Proteins containing ar 96.0 0.083 1.8E-06 45.1 9.9 98 6-104 385-488 (678)
44 PF03224 V-ATPase_H_N: V-ATPas 95.8 0.02 4.3E-07 44.5 5.3 87 36-127 106-197 (312)
45 PF12717 Cnd1: non-SMC mitotic 95.8 0.11 2.4E-06 37.1 8.8 92 20-119 11-105 (178)
46 KOG2171 Karyopherin (importin) 95.6 0.094 2E-06 47.1 9.1 103 1-104 393-502 (1075)
47 KOG3678 SARM protein (with ste 95.6 0.074 1.6E-06 44.4 7.9 92 30-127 175-270 (832)
48 PF11698 V-ATPase_H_C: V-ATPas 95.5 0.038 8.2E-07 37.6 5.0 69 34-104 42-113 (119)
49 COG5096 Vesicle coat complex, 95.5 0.095 2E-06 45.7 8.5 88 10-104 103-193 (757)
50 KOG0168 Putative ubiquitin fus 95.4 0.046 9.9E-07 48.0 6.3 84 20-105 278-363 (1051)
51 PF09759 Atx10homo_assoc: Spin 95.2 0.19 4E-06 33.3 7.4 50 16-65 4-61 (102)
52 KOG2122 Beta-catenin-binding p 95.2 0.05 1.1E-06 50.4 6.0 94 12-106 499-601 (2195)
53 KOG4646 Uncharacterized conser 95.2 0.17 3.7E-06 35.7 7.4 88 35-127 16-105 (173)
54 PF02985 HEAT: HEAT repeat; I 95.0 0.026 5.6E-07 28.9 2.4 28 78-105 1-28 (31)
55 PRK13800 putative oxidoreducta 94.9 0.1 2.2E-06 46.2 7.3 23 39-61 811-834 (897)
56 KOG4500 Rho/Rac GTPase guanine 94.8 0.11 2.4E-06 42.9 6.5 76 27-104 306-388 (604)
57 KOG2171 Karyopherin (importin) 94.8 0.34 7.4E-06 43.6 9.9 95 8-104 358-459 (1075)
58 KOG3678 SARM protein (with ste 94.5 0.32 6.8E-06 40.8 8.6 118 7-127 231-354 (832)
59 PF05536 Neurochondrin: Neuroc 94.4 0.29 6.3E-06 41.2 8.3 89 11-104 70-166 (543)
60 PF09759 Atx10homo_assoc: Spin 94.1 0.55 1.2E-05 31.0 7.6 54 51-105 2-58 (102)
61 KOG1222 Kinesin associated pro 94.0 0.58 1.3E-05 39.4 9.1 110 14-128 279-393 (791)
62 PTZ00429 beta-adaptin; Provisi 94.0 0.3 6.5E-06 42.7 7.8 87 12-105 118-207 (746)
63 COG5369 Uncharacterized conser 93.9 0.26 5.6E-06 41.7 7.0 87 17-104 407-500 (743)
64 PF01602 Adaptin_N: Adaptin N 93.6 1 2.3E-05 36.7 10.1 87 9-105 53-142 (526)
65 KOG4646 Uncharacterized conser 93.5 0.92 2E-05 32.1 8.1 83 20-104 40-126 (173)
66 KOG2122 Beta-catenin-binding p 92.9 0.45 9.7E-06 44.6 7.2 97 32-129 232-347 (2195)
67 KOG0946 ER-Golgi vesicle-tethe 91.7 1.2 2.7E-05 39.2 8.3 105 20-128 145-261 (970)
68 PF12755 Vac14_Fab1_bd: Vacuol 91.6 0.93 2E-05 29.5 5.9 46 17-62 47-95 (97)
69 PRK13800 putative oxidoreducta 91.5 0.48 1E-05 42.1 5.9 61 34-105 651-712 (897)
70 KOG1222 Kinesin associated pro 90.9 0.7 1.5E-05 38.9 5.8 96 7-104 514-619 (791)
71 PF10363 DUF2435: Protein of u 89.7 1.3 2.8E-05 28.6 5.3 67 36-106 4-72 (92)
72 KOG2023 Nuclear transport rece 89.5 0.52 1.1E-05 40.8 4.1 77 20-104 381-461 (885)
73 PF07923 N1221: N1221-like pro 88.5 0.93 2E-05 35.1 4.7 55 33-87 58-126 (293)
74 KOG1061 Vesicle coat complex A 88.5 1.4 2.9E-05 38.5 5.9 67 35-105 121-188 (734)
75 COG1413 FOG: HEAT repeat [Ener 88.4 1.7 3.8E-05 33.6 6.1 59 34-104 73-133 (335)
76 PF08045 CDC14: Cell division 88.3 2.7 5.9E-05 32.3 6.9 71 54-127 111-182 (257)
77 KOG1789 Endocytosis protein RM 88.0 6.5 0.00014 36.5 9.8 103 18-126 1746-1858(2235)
78 KOG4413 26S proteasome regulat 87.6 3.6 7.9E-05 33.2 7.4 95 27-127 120-219 (524)
79 PF04063 DUF383: Domain of unk 87.4 9.3 0.0002 27.9 9.1 85 19-105 17-131 (192)
80 PF10165 Ric8: Guanine nucleot 87.3 4 8.7E-05 33.6 7.9 81 44-126 41-127 (446)
81 cd00256 VATPase_H VATPase_H, r 87.2 1.3 2.9E-05 36.3 5.0 68 35-104 353-423 (429)
82 PF06371 Drf_GBD: Diaphanous G 87.1 1.9 4.2E-05 30.4 5.3 76 27-104 99-185 (187)
83 PF11698 V-ATPase_H_C: V-ATPas 87.1 1.5 3.2E-05 29.9 4.4 35 28-62 78-114 (119)
84 KOG1824 TATA-binding protein-i 87.1 2.6 5.6E-05 38.1 6.8 61 7-67 828-890 (1233)
85 TIGR02270 conserved hypothetic 86.7 3 6.4E-05 34.1 6.7 57 36-104 148-205 (410)
86 COG1413 FOG: HEAT repeat [Ener 86.6 3.5 7.6E-05 31.8 6.9 59 35-105 43-102 (335)
87 KOG2259 Uncharacterized conser 86.5 0.57 1.2E-05 40.5 2.5 73 27-105 365-438 (823)
88 PF11701 UNC45-central: Myosin 86.5 4.9 0.00011 28.2 7.0 69 31-102 82-155 (157)
89 PTZ00429 beta-adaptin; Provisi 86.3 2.9 6.3E-05 36.7 6.8 48 17-64 160-209 (746)
90 PF05918 API5: Apoptosis inhib 86.3 2.5 5.4E-05 35.9 6.2 61 35-101 59-120 (556)
91 PF12460 MMS19_C: RNAPII trans 86.3 2.5 5.5E-05 34.2 6.1 75 28-105 317-393 (415)
92 KOG4535 HEAT and armadillo rep 86.2 1.4 3.1E-05 37.1 4.6 96 10-106 446-559 (728)
93 KOG3036 Protein involved in ce 85.6 5.1 0.00011 30.9 7.0 107 17-123 98-215 (293)
94 KOG2759 Vacuolar H+-ATPase V1 85.6 7.7 0.00017 31.9 8.4 94 33-128 196-297 (442)
95 PF12830 Nipped-B_C: Sister ch 85.6 6.2 0.00013 28.5 7.3 61 36-104 9-72 (187)
96 PF12719 Cnd3: Nuclear condens 85.5 3.9 8.4E-05 31.5 6.6 70 34-104 63-141 (298)
97 KOG0946 ER-Golgi vesicle-tethe 85.1 4.1 8.9E-05 36.1 7.0 93 33-125 120-225 (970)
98 KOG1241 Karyopherin (importin) 84.7 3.8 8.2E-05 36.1 6.6 94 11-105 376-476 (859)
99 KOG2734 Uncharacterized conser 84.2 6 0.00013 32.9 7.3 93 30-124 120-227 (536)
100 KOG2023 Nuclear transport rece 84.2 1.3 2.8E-05 38.6 3.6 92 11-104 405-503 (885)
101 COG5231 VMA13 Vacuolar H+-ATPa 84.2 2 4.3E-05 34.4 4.4 44 20-63 377-428 (432)
102 KOG4535 HEAT and armadillo rep 83.1 0.44 9.6E-06 40.0 0.4 57 46-103 541-600 (728)
103 PF11701 UNC45-central: Myosin 82.3 3.7 8.1E-05 28.8 4.9 84 20-104 28-115 (157)
104 PF06025 DUF913: Domain of Unk 82.2 11 0.00024 30.4 8.1 96 27-126 97-201 (379)
105 KOG4413 26S proteasome regulat 81.6 7.1 0.00015 31.6 6.6 72 34-105 81-156 (524)
106 PF12348 CLASP_N: CLASP N term 81.4 11 0.00023 27.4 7.3 82 16-105 71-159 (228)
107 KOG1241 Karyopherin (importin) 80.9 6.6 0.00014 34.7 6.6 71 35-106 364-435 (859)
108 COG5369 Uncharacterized conser 80.8 5.4 0.00012 34.1 5.9 74 31-105 469-544 (743)
109 KOG2759 Vacuolar H+-ATPase V1 80.7 3.6 7.7E-05 33.8 4.8 68 35-104 366-436 (442)
110 smart00567 EZ_HEAT E-Z type HE 80.5 3.3 7.1E-05 20.5 3.0 13 50-62 2-15 (30)
111 TIGR02270 conserved hypothetic 80.3 6.9 0.00015 32.0 6.4 67 37-104 88-174 (410)
112 PF08216 CTNNBL: Catenin-beta- 80.2 2.5 5.5E-05 28.2 3.2 41 53-95 65-105 (108)
113 KOG1991 Nuclear transport rece 79.6 6.1 0.00013 35.6 6.2 87 13-101 478-571 (1010)
114 PF12348 CLASP_N: CLASP N term 79.0 22 0.00047 25.8 8.5 83 20-104 117-204 (228)
115 COG5215 KAP95 Karyopherin (imp 78.5 8.8 0.00019 33.2 6.5 80 36-117 598-681 (858)
116 PF10274 ParcG: Parkin co-regu 75.9 13 0.00028 27.1 6.1 70 34-104 37-107 (183)
117 PF08569 Mo25: Mo25-like; Int 75.1 23 0.0005 28.2 7.8 91 28-123 69-166 (335)
118 KOG2259 Uncharacterized conser 75.0 7.8 0.00017 33.9 5.3 68 36-104 235-308 (823)
119 PF04063 DUF383: Domain of unk 74.6 24 0.00051 25.8 7.3 74 13-88 74-158 (192)
120 PF05536 Neurochondrin: Neuroc 74.1 21 0.00046 30.2 7.8 102 20-126 28-145 (543)
121 KOG2973 Uncharacterized conser 74.0 9.5 0.00021 30.4 5.3 63 37-105 5-70 (353)
122 KOG0567 HEAT repeat-containing 72.5 19 0.00041 28.0 6.5 53 41-105 193-248 (289)
123 KOG2973 Uncharacterized conser 72.2 38 0.00081 27.1 8.2 94 8-105 13-110 (353)
124 cd03568 VHS_STAM VHS domain fa 72.2 19 0.00041 25.0 6.1 86 18-104 17-108 (144)
125 PF12717 Cnd1: non-SMC mitotic 71.6 13 0.00029 26.3 5.3 51 48-104 1-52 (178)
126 PF08713 DNA_alkylation: DNA a 71.5 12 0.00025 26.9 5.1 63 10-76 132-196 (213)
127 PF08506 Cse1: Cse1; InterPro 71.1 22 0.00048 28.6 7.0 69 27-101 301-370 (370)
128 PF11841 DUF3361: Domain of un 71.0 25 0.00054 25.1 6.5 76 28-105 4-88 (160)
129 PF04078 Rcd1: Cell differenti 70.7 47 0.001 25.7 9.5 77 27-105 131-217 (262)
130 COG5096 Vesicle coat complex, 70.6 13 0.00027 32.9 5.7 62 36-105 93-155 (757)
131 PF12463 DUF3689: Protein of u 68.5 53 0.0011 25.9 8.4 74 33-106 93-173 (303)
132 PF08506 Cse1: Cse1; InterPro 68.1 7.8 0.00017 31.2 3.8 49 10-58 321-370 (370)
133 PF14664 RICTOR_N: Rapamycin-i 67.5 30 0.00066 27.8 7.1 107 13-127 39-153 (371)
134 KOG0212 Uncharacterized conser 66.9 2.5 5.4E-05 36.1 0.8 59 33-93 82-141 (675)
135 KOG0213 Splicing factor 3b, su 66.4 17 0.00036 32.6 5.6 104 8-115 855-963 (1172)
136 KOG1943 Beta-tubulin folding c 66.0 42 0.00091 31.0 8.1 98 2-101 384-495 (1133)
137 PF12031 DUF3518: Domain of un 65.9 46 0.001 25.6 7.3 81 8-91 134-230 (257)
138 COG5231 VMA13 Vacuolar H+-ATPa 65.3 12 0.00025 30.2 4.1 69 35-104 356-426 (432)
139 COG5209 RCD1 Uncharacterized p 64.0 22 0.00049 27.3 5.3 96 27-122 132-235 (315)
140 cd03561 VHS VHS domain family; 63.8 43 0.00092 22.6 6.9 85 19-104 18-110 (133)
141 KOG2025 Chromosome condensatio 63.0 27 0.00058 31.0 6.1 70 27-102 118-189 (892)
142 cd03569 VHS_Hrs_Vps27p VHS dom 62.2 45 0.00098 23.0 6.3 87 17-104 20-112 (142)
143 PF08216 CTNNBL: Catenin-beta- 62.1 15 0.00032 24.6 3.6 45 8-52 50-104 (108)
144 PF10274 ParcG: Parkin co-regu 61.9 48 0.001 24.2 6.6 31 34-64 79-110 (183)
145 PF03130 HEAT_PBS: PBS lyase H 61.3 9.7 0.00021 18.5 2.1 13 51-63 1-14 (27)
146 KOG1059 Vesicle coat complex A 60.7 35 0.00076 30.3 6.5 64 36-105 145-209 (877)
147 KOG1061 Vesicle coat complex A 60.7 13 0.00028 32.6 4.0 60 5-64 129-190 (734)
148 KOG4524 Uncharacterized conser 60.6 32 0.00069 31.3 6.3 77 27-106 797-876 (1014)
149 PF12460 MMS19_C: RNAPII trans 60.4 52 0.0011 26.6 7.3 47 19-65 345-396 (415)
150 PF03752 ALF: Short repeats of 60.0 27 0.00058 19.1 4.0 34 40-77 4-38 (43)
151 cd06561 AlkD_like A new struct 59.4 35 0.00077 24.0 5.6 66 8-76 115-182 (197)
152 KOG1517 Guanine nucleotide bin 58.6 37 0.00079 31.5 6.4 73 32-104 639-730 (1387)
153 cd03567 VHS_GGA VHS domain fam 56.8 63 0.0014 22.3 6.5 86 17-103 17-113 (139)
154 KOG0567 HEAT repeat-containing 56.4 34 0.00074 26.7 5.2 55 36-102 219-276 (289)
155 KOG1967 DNA repair/transcripti 55.1 47 0.001 30.2 6.4 84 20-105 890-981 (1030)
156 KOG1062 Vesicle coat complex A 54.1 28 0.0006 31.1 4.9 52 17-72 127-179 (866)
157 PF07814 WAPL: Wings apart-lik 53.3 73 0.0016 25.4 6.9 85 2-87 26-116 (361)
158 PF08045 CDC14: Cell division 52.8 1E+02 0.0022 23.7 7.3 74 27-101 124-202 (257)
159 KOG1242 Protein containing ada 52.5 91 0.002 26.8 7.6 68 35-104 254-322 (569)
160 COG5181 HSH155 U2 snRNP splice 52.0 26 0.00056 30.8 4.3 104 8-116 660-769 (975)
161 PF08389 Xpo1: Exportin 1-like 49.8 32 0.00069 22.7 3.9 62 35-101 82-148 (148)
162 PF07539 DRIM: Down-regulated 49.7 33 0.00071 23.8 3.9 27 77-103 17-43 (141)
163 PF14663 RasGEF_N_2: Rapamycin 49.5 59 0.0013 21.5 5.0 39 36-76 9-48 (115)
164 PF04499 SAPS: SIT4 phosphatas 48.9 59 0.0013 27.2 5.9 57 31-87 58-128 (475)
165 KOG2073 SAP family cell cycle 48.7 32 0.0007 30.8 4.5 60 28-87 183-249 (838)
166 KOG1243 Protein kinase [Genera 48.6 63 0.0014 28.4 6.1 67 34-104 329-396 (690)
167 PF11864 DUF3384: Domain of un 48.1 39 0.00085 27.8 4.8 87 13-104 230-328 (464)
168 KOG2137 Protein kinase [Signal 47.4 52 0.0011 28.9 5.5 69 32-104 386-456 (700)
169 COG5218 YCG1 Chromosome conden 47.4 68 0.0015 28.2 6.0 42 21-62 118-160 (885)
170 PF08569 Mo25: Mo25-like; Int 47.4 1.4E+02 0.0031 23.7 7.6 76 28-104 157-236 (335)
171 COG5215 KAP95 Karyopherin (imp 46.7 70 0.0015 28.0 6.0 70 35-105 366-436 (858)
172 COG2854 Ttg2D ABC-type transpo 46.6 64 0.0014 24.0 5.2 69 7-75 25-97 (202)
173 PF12719 Cnd3: Nuclear condens 45.5 81 0.0018 24.2 5.9 64 35-104 26-91 (298)
174 PF14500 MMS19_N: Dos2-interac 45.2 28 0.00061 26.6 3.3 60 39-105 3-68 (262)
175 PF10521 DUF2454: Protein of u 44.6 1.4E+02 0.0031 22.8 8.5 87 17-104 100-201 (282)
176 PF14664 RICTOR_N: Rapamycin-i 44.5 1.2E+02 0.0027 24.4 7.0 68 33-104 106-174 (371)
177 KOG2734 Uncharacterized conser 44.1 68 0.0015 27.0 5.4 39 66-104 114-152 (536)
178 PF01347 Vitellogenin_N: Lipop 44.0 70 0.0015 27.0 5.8 59 36-101 522-584 (618)
179 KOG4151 Myosin assembly protei 43.4 62 0.0013 28.7 5.4 69 35-104 541-611 (748)
180 KOG1517 Guanine nucleotide bin 43.3 2.7E+02 0.0059 26.3 9.3 99 5-105 562-670 (1387)
181 PF05004 IFRD: Interferon-rela 42.2 57 0.0012 25.5 4.7 35 27-62 221-256 (309)
182 KOG1820 Microtubule-associated 41.3 74 0.0016 28.6 5.6 87 35-121 371-458 (815)
183 KOG1789 Endocytosis protein RM 41.2 62 0.0014 30.6 5.1 93 31-127 2043-2136(2235)
184 PF11707 Npa1: Ribosome 60S bi 40.9 1.7E+02 0.0038 22.9 7.2 53 50-103 129-184 (330)
185 KOG1991 Nuclear transport rece 40.2 97 0.0021 28.4 6.1 53 11-63 431-491 (1010)
186 PF00790 VHS: VHS domain; Int 40.1 52 0.0011 22.4 3.7 84 19-103 23-115 (140)
187 PF11791 Aconitase_B_N: Aconit 39.7 21 0.00046 25.3 1.7 27 37-63 96-123 (154)
188 KOG1824 TATA-binding protein-i 39.6 45 0.00097 30.7 4.0 70 34-105 965-1035(1233)
189 PF06371 Drf_GBD: Diaphanous G 39.4 97 0.0021 21.5 5.2 36 27-62 149-186 (187)
190 cd03572 ENTH_epsin_related ENT 39.2 1.2E+02 0.0025 20.6 5.3 51 35-85 38-90 (122)
191 KOG3723 PH domain protein Melt 39.0 2.1E+02 0.0045 25.1 7.6 65 35-104 199-264 (851)
192 PF09205 DUF1955: Domain of un 38.9 33 0.00071 24.3 2.5 71 29-102 10-97 (161)
193 smart00288 VHS Domain present 37.7 1.3E+02 0.0028 20.3 6.4 84 19-103 18-108 (133)
194 KOG1243 Protein kinase [Genera 37.3 1.5E+02 0.0032 26.2 6.6 67 30-103 288-356 (690)
195 PF06012 DUF908: Domain of Unk 36.8 2.1E+02 0.0045 22.5 7.9 46 20-65 242-299 (329)
196 PF10363 DUF2435: Protein of u 36.6 1.1E+02 0.0025 19.4 5.4 54 11-64 17-73 (92)
197 PF14225 MOR2-PAG1_C: Cell mor 35.9 92 0.002 23.9 4.8 65 34-104 187-252 (262)
198 PF06298 PsbY: Photosystem II 35.6 66 0.0014 17.2 2.8 15 17-31 16-34 (36)
199 KOG1242 Protein containing ada 35.1 1.3E+02 0.0028 26.0 5.9 68 36-104 373-442 (569)
200 KOG0915 Uncharacterized conser 34.4 65 0.0014 31.0 4.3 66 37-103 820-887 (1702)
201 KOG1059 Vesicle coat complex A 34.4 1.3E+02 0.0028 27.0 5.8 31 34-64 180-211 (877)
202 PF04388 Hamartin: Hamartin pr 34.2 1.1E+02 0.0024 26.7 5.6 66 35-103 70-137 (668)
203 smart00638 LPD_N Lipoprotein N 34.2 1.3E+02 0.0028 25.2 5.9 17 48-64 493-510 (574)
204 PF13606 Ank_3: Ankyrin repeat 33.9 51 0.0011 16.2 2.2 16 63-78 11-26 (30)
205 PF10165 Ric8: Guanine nucleot 32.3 2.9E+02 0.0062 22.8 9.0 93 11-104 45-166 (446)
206 PF11865 DUF3385: Domain of un 32.3 1.8E+02 0.0038 20.4 5.8 19 8-26 21-40 (160)
207 KOG2005 26S proteasome regulat 32.1 2.3E+02 0.005 25.3 6.9 73 37-117 642-715 (878)
208 PRK13240 pbsY photosystem II p 32.1 92 0.002 17.0 3.2 18 16-33 15-36 (40)
209 PF05004 IFRD: Interferon-rela 32.0 1.4E+02 0.003 23.4 5.3 55 49-104 200-255 (309)
210 KOG1077 Vesicle coat complex A 30.4 1.9E+02 0.0041 26.0 6.1 68 34-105 328-397 (938)
211 KOG1240 Protein kinase contain 30.3 1.2E+02 0.0026 28.7 5.2 60 34-94 461-524 (1431)
212 KOG0212 Uncharacterized conser 30.3 2.6E+02 0.0056 24.4 6.9 70 35-107 336-407 (675)
213 COG5218 YCG1 Chromosome conden 30.3 2E+02 0.0044 25.4 6.3 70 34-105 90-160 (885)
214 KOG3036 Protein involved in ce 30.2 2.7E+02 0.0058 21.8 10.2 75 28-104 161-245 (293)
215 KOG2062 26S proteasome regulat 30.0 1.2E+02 0.0027 27.2 5.0 31 34-64 587-619 (929)
216 PF01347 Vitellogenin_N: Lipop 29.4 2.3E+02 0.0051 23.8 6.7 79 14-104 451-551 (618)
217 KOG1060 Vesicle coat complex A 29.4 2.1E+02 0.0046 25.9 6.4 99 20-127 380-479 (968)
218 KOG1062 Vesicle coat complex A 29.3 2.9E+02 0.0063 25.0 7.2 59 38-104 353-412 (866)
219 PF00023 Ank: Ankyrin repeat H 29.1 76 0.0017 15.5 2.4 17 62-78 10-26 (33)
220 PF12726 SEN1_N: SEN1 N termin 29.0 4E+02 0.0086 23.4 8.6 52 53-105 500-552 (727)
221 PF09450 DUF2019: Domain of un 28.9 17 0.00037 24.2 -0.1 44 36-80 48-93 (106)
222 CHL00196 psbY photosystem II p 28.8 1E+02 0.0022 16.4 2.9 10 17-26 16-25 (36)
223 PF04078 Rcd1: Cell differenti 28.5 1.6E+02 0.0034 22.8 4.9 75 30-104 86-166 (262)
224 KOG1078 Vesicle coat complex C 27.9 1.6E+02 0.0034 26.6 5.3 67 33-105 243-310 (865)
225 KOG2032 Uncharacterized conser 27.9 2.1E+02 0.0046 24.3 5.9 66 34-103 253-326 (533)
226 COG5116 RPN2 26S proteasome re 27.3 1.1E+02 0.0023 26.9 4.2 64 33-104 583-648 (926)
227 PF06685 DUF1186: Protein of u 26.8 1.9E+02 0.0041 22.1 5.2 43 33-75 71-121 (249)
228 KOG0413 Uncharacterized conser 26.6 1.4E+02 0.0029 28.0 4.8 96 13-123 945-1045(1529)
229 KOG1943 Beta-tubulin folding c 26.5 2.2E+02 0.0047 26.6 6.1 56 44-104 553-609 (1133)
230 KOG1566 Conserved protein Mo25 26.1 1E+02 0.0022 24.7 3.7 58 28-85 72-134 (342)
231 KOG0414 Chromosome condensatio 26.1 1.6E+02 0.0035 27.7 5.3 50 12-62 937-989 (1251)
232 PF06025 DUF913: Domain of Unk 26.1 3.5E+02 0.0077 21.8 7.6 61 28-90 144-209 (379)
233 PF06540 GMAP: Galanin message 26.0 1.1E+02 0.0023 18.3 2.9 28 89-127 21-48 (62)
234 KOG2274 Predicted importin 9 [ 25.9 1.6E+02 0.0036 26.9 5.1 63 37-104 92-155 (1005)
235 PF06012 DUF908: Domain of Unk 25.8 2.7E+02 0.0059 21.8 6.1 51 55-105 240-296 (329)
236 KOG1240 Protein kinase contain 25.7 1.2E+02 0.0026 28.8 4.3 89 12-104 630-723 (1431)
237 PF06436 Pneumovirus_M2: Pneum 25.1 2.2E+02 0.0047 20.0 4.7 55 20-75 27-87 (157)
238 COG5240 SEC21 Vesicle coat com 24.7 85 0.0018 27.5 3.1 49 53-103 356-404 (898)
239 PF15573 Imm27: Immunity prote 24.7 1.2E+02 0.0026 23.1 3.7 27 38-64 49-77 (259)
240 KOG0211 Protein phosphatase 2A 24.7 2.5E+02 0.0055 25.1 6.1 80 20-103 580-661 (759)
241 PF13925 Katanin_con80: con80 24.6 2.5E+02 0.0055 19.6 8.0 55 47-104 41-96 (164)
242 KOG2062 26S proteasome regulat 24.6 2E+02 0.0043 26.0 5.3 25 44-69 564-589 (929)
243 COG5116 RPN2 26S proteasome re 24.5 3E+02 0.0065 24.4 6.3 31 34-64 550-582 (926)
244 PF10798 YmgB: Biofilm develop 24.5 64 0.0014 19.2 1.8 38 31-68 21-59 (61)
245 KOG2025 Chromosome condensatio 24.2 1.5E+02 0.0032 26.6 4.5 70 34-105 84-154 (892)
246 KOG0414 Chromosome condensatio 23.7 3.3E+02 0.0072 25.8 6.7 56 37-98 1000-1056(1251)
247 cd00197 VHS_ENTH_ANTH VHS, ENT 23.7 2.1E+02 0.0046 18.4 6.6 68 35-102 37-111 (115)
248 cd07064 AlkD_like_1 A new stru 23.4 1.5E+02 0.0033 21.6 4.0 38 37-75 152-190 (208)
249 PF08167 RIX1: rRNA processing 23.4 2.7E+02 0.0058 19.4 6.6 68 34-104 24-95 (165)
250 PF13001 Ecm29: Proteasome sta 23.0 1.9E+02 0.0042 24.1 4.9 84 18-104 349-441 (501)
251 PF11841 DUF3361: Domain of un 22.1 3E+02 0.0065 19.6 8.3 53 19-71 82-139 (160)
252 KOG2611 Neurochondrin/leucine- 21.8 2E+02 0.0043 24.7 4.7 66 20-89 86-164 (698)
253 cd00930 Cyt_c_Oxidase_VIII Cyt 21.5 61 0.0013 18.0 1.2 10 53-62 29-38 (43)
254 PF09268 Clathrin-link: Clathr 21.1 48 0.001 16.0 0.6 20 33-52 1-20 (24)
255 KOG0213 Splicing factor 3b, su 20.9 2.5E+02 0.0055 25.6 5.3 64 39-104 803-868 (1172)
256 PF11486 DUF3212: Protein of u 20.4 1.2E+02 0.0026 20.4 2.6 17 11-27 5-21 (120)
257 KOG0915 Uncharacterized conser 20.1 6E+02 0.013 25.0 7.7 84 34-118 997-1080(1702)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-31 Score=214.84 Aligned_cols=114 Identities=48% Similarity=0.720 Sum_probs=106.5
Q ss_pred HHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCC
Q 044025 16 KENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSD 90 (129)
Q Consensus 16 r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d 90 (129)
.++|++|||++ |+|+|+++|++|.|+.+|+++|+++| ||+|||+|++.+|+++|+.||+++|+|++||++|.+.|
T Consensus 341 EAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D 420 (514)
T KOG0166|consen 341 EACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD 420 (514)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC
Confidence 35699999999 99999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCC---CC---hHHHHHHHhccchhhhcCC
Q 044025 91 QRIVTVCLNGNRKLGMDN---RV---NVYTQMINECDGLDKIENL 129 (129)
Q Consensus 91 ~~~~~~aL~al~ni~~~~---~~---~~~~~~i~e~ggl~~le~L 129 (129)
.+++.++|+|++||.+.+ .. ++++.+|+||||+++||.|
T Consensus 421 ~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~L 465 (514)
T KOG0166|consen 421 VKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENL 465 (514)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHh
Confidence 999999999999984411 11 8999999999999999976
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=7.1e-29 Score=192.83 Aligned_cols=121 Identities=43% Similarity=0.650 Sum_probs=108.2
Q ss_pred CCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCC--HHHHHHHHhcCChH
Q 044025 8 PKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGS--HEHIQFLVSQGYIK 80 (129)
Q Consensus 8 ~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~--~~~i~~lv~~g~i~ 80 (129)
|++ .....+||++|||++ |||+|++++++|+|+++|++.++++| |||||++|++.||. |++++||+++|+|+
T Consensus 339 ~ke-~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~Ik 417 (526)
T COG5064 339 PKE-NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIK 417 (526)
T ss_pred hhh-hhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchh
Confidence 455 233356799999999 99999999999999999999999999 99999999999974 89999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhccc---------CCCChHHHHHHHhccchhhhcCC
Q 044025 81 PLCDLLVCSDQRIVTVCLNGNRKLGM---------DNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 81 ~l~~lL~~~d~~~~~~aL~al~ni~~---------~~~~~~~~~~i~e~ggl~~le~L 129 (129)
|||++|...|.++++++|++++|+.+ +...|.|+.+++++||.|+|+.|
T Consensus 418 pLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~ 475 (526)
T COG5064 418 PLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGL 475 (526)
T ss_pred HHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHh
Confidence 99999999999999999999999844 33467899999999999999754
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=9.1e-21 Score=154.08 Aligned_cols=120 Identities=29% Similarity=0.355 Sum_probs=109.2
Q ss_pred cccCCCCChHHHHHH-HHHHHhhH------hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025 4 QQKNPKLPLSKLKEN-TLDSNIVV------CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS 75 (129)
Q Consensus 4 ~~~~~~~~~~~~r~~-w~lsNI~~------qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~ 75 (129)
..+.++.+.+++|.+ |++||+|+ +...+ +.++|.|..++.+.|.++. +||||++|+++|++ +.++.+++
T Consensus 201 ~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v--~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n-e~iq~vi~ 277 (514)
T KOG0166|consen 201 RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV--APILPALLRLLHSTDEEVLTDACWALSYLTDGSN-EKIQMVID 277 (514)
T ss_pred HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHH
Confidence 345577778999987 99999999 56666 8899999999999999999 99999999999955 89999999
Q ss_pred cCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 76 QGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 76 ~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
.|++|.|+++|.+..+.++.++|++++|| .+|++.+++.+.++|+++.|..
T Consensus 278 ~gvv~~LV~lL~~~~~~v~~PaLRaiGNI--vtG~d~QTq~vi~~~~L~~l~~ 328 (514)
T KOG0166|consen 278 AGVVPRLVDLLGHSSPKVVTPALRAIGNI--VTGSDEQTQVVINSGALPVLSN 328 (514)
T ss_pred ccchHHHHHHHcCCCcccccHHHhhccce--eeccHHHHHHHHhcChHHHHHH
Confidence 99999999999999999999999999999 5689999999999999998754
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.73 E-value=3.8e-18 Score=133.22 Aligned_cols=112 Identities=25% Similarity=0.326 Sum_probs=102.1
Q ss_pred ChHHHHHH-HHHHHhhH------hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH
Q 044025 11 PLSKLKEN-TLDSNIVV------CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL 82 (129)
Q Consensus 11 ~~~~~r~~-w~lsNI~~------qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l 82 (129)
-++++|++ |+|||+|+ .-+.+ +..+|.|..++.+.|+++- +||||+|++.+|.+ +.++.+++.|+-++|
T Consensus 214 ~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~-E~i~avld~g~~~RL 290 (526)
T COG5064 214 HISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPN-EKIQAVLDVGIPGRL 290 (526)
T ss_pred hHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH-HHHHHHHhcCCcHHH
Confidence 36899998 89999999 34445 6789999999999999999 99999999999955 889999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 83 CDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 83 ~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
+++|.+++.+++.++|++++|| .+|++.+++.+.+||.|+.+.
T Consensus 291 vElLs~~sa~iqtPalR~vGNI--VTG~D~QTqviI~~G~L~a~~ 333 (526)
T COG5064 291 VELLSHESAKIQTPALRSVGNI--VTGSDDQTQVIINCGALKAFR 333 (526)
T ss_pred HHHhcCccccccCHHHHhhcCe--eecCccceehheecccHHHHH
Confidence 9999999999999999999999 568999999999999998764
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.65 E-value=7.2e-16 Score=140.34 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=102.8
Q ss_pred ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI 79 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i 79 (129)
.+..+++..+..++|+|+|+++ +.+.++++|++|+++.+|++++++++ ||+|+|+|++.+++.+|..++++.|++
T Consensus 617 LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV 696 (2102)
T PLN03200 617 LLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAI 696 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCH
Confidence 3444445566667799999999 78889999999999999999999999 999999999998888888899999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 80 KPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 80 ~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
|+|+++|+++|.+++..++.+|.|+.+. .+....+.+.|+++.|-
T Consensus 697 ~pL~~LL~~~d~~v~e~Al~ALanLl~~---~e~~~ei~~~~~I~~Lv 741 (2102)
T PLN03200 697 KPLIKLAKSSSIEVAEQAVCALANLLSD---PEVAAEALAEDIILPLT 741 (2102)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHcC---chHHHHHHhcCcHHHHH
Confidence 9999999999999999999999999752 22455566778887664
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.51 E-value=1.8e-13 Score=125.04 Aligned_cols=115 Identities=14% Similarity=0.018 Sum_probs=100.6
Q ss_pred CChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh
Q 044025 10 LPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD 84 (129)
Q Consensus 10 ~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~ 84 (129)
....+...+|++++++. .++.+++.|.+|.|+++|.+++..+| .|+|+++|++++ +.++...++++|+||+|++
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~-ndenr~aIieaGaIP~LV~ 495 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE-VDESKWAITAAGGIPPLVQ 495 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHH
Confidence 34455556799999997 78889999999999999999999999 999999999987 6577888999999999999
Q ss_pred hcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 85 LLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 85 lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
+|.+++.++...+.|+|+|+.. +.++....+.++|+++.|-
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~--~~~qir~iV~~aGAIppLV 536 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCC--HSEDIRACVESAGAVPALL 536 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhC--CcHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999963 4666677788999998753
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.42 E-value=3.3e-12 Score=84.27 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=81.7
Q ss_pred cCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025 6 KNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIK 80 (129)
Q Consensus 6 ~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~ 80 (129)
+.+.++......+|++.|++. ..+.+++.|++|.+.++|++++++++ .|+|+++|++.+. +.....+++.|+++
T Consensus 16 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~ 94 (120)
T cd00020 16 LSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP-EDNKLIVLEAGGVP 94 (120)
T ss_pred HHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc-HHHHHHHHHCCChH
Confidence 333333333334479999997 45667788999999999999999999 9999999999974 45566778899999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 81 PLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 81 ~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.+..+|...+.++...+++++.|+.
T Consensus 95 ~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 95 KLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999873
No 8
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.34 E-value=1.6e-11 Score=80.93 Aligned_cols=95 Identities=29% Similarity=0.436 Sum_probs=83.3
Q ss_pred HHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCC
Q 044025 30 TVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDN 108 (129)
Q Consensus 30 ~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~ 108 (129)
.+++.|++|.+++++.+++.++| .|+|++.|++.+ +++....+++.|++|.+.++|.+++++++..++++++|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~-- 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA-- 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc--
Confidence 35678999999999999999999 999999999998 45777888899999999999999999999999999999964
Q ss_pred CChHHHHHHHhccchhhhc
Q 044025 109 RVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 109 ~~~~~~~~i~e~ggl~~le 127 (129)
........+.+.|+++.+.
T Consensus 79 ~~~~~~~~~~~~g~l~~l~ 97 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLV 97 (120)
T ss_pred CcHHHHHHHHHCCChHHHH
Confidence 4556677778888887764
No 9
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=7.6e-12 Score=98.88 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=99.7
Q ss_pred CCChHHHHHHH-HHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC--ChHH
Q 044025 9 KLPLSKLKENT-LDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG--YIKP 81 (129)
Q Consensus 9 ~~~~~~~r~~w-~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g--~i~~ 81 (129)
.......|++. +++|++. .-+.++.+|.+|.|+.+++++|.++| .++-+++|++.+. ...+.+++.+ ++|.
T Consensus 178 skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~--~~Rk~Laqaep~lv~~ 255 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR--RARKILAQAEPKLVPA 255 (550)
T ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH--HHHHHHHhcccchHHH
Confidence 33455667887 9999998 55667899999999999999999999 9999999999863 5667888877 9999
Q ss_pred HHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 82 LCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 82 l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
|++++..+++++...+--|++|++. +.+|...+.++|+++.+-+
T Consensus 256 Lv~Lmd~~s~kvkcqA~lALrnlas---dt~Yq~eiv~ag~lP~lv~ 299 (550)
T KOG4224|consen 256 LVDLMDDGSDKVKCQAGLALRNLAS---DTEYQREIVEAGSLPLLVE 299 (550)
T ss_pred HHHHHhCCChHHHHHHHHHHhhhcc---cchhhhHHHhcCCchHHHH
Confidence 9999999999999999999999973 6778888999999987654
No 10
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=99.02 E-value=5.6e-10 Score=61.93 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=34.6
Q ss_pred hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025 27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATY 63 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~ 63 (129)
+.+.++++|++|.|+++|+++++++| +|+|||+|++.
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57789999999999999999999999 99999999974
No 11
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.8e-09 Score=85.56 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=90.2
Q ss_pred ccccCCCCChHHHHHHHHHHHhhH---hHHHHHhhc--cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc
Q 044025 3 IQQKNPKLPLSKLKENTLDSNIVV---CMYTVIVAN--IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ 76 (129)
Q Consensus 3 i~~~~~~~~~~~~r~~w~lsNI~~---qiq~vi~~g--~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~ 76 (129)
+..++..++.+.-+...++|||+. .-+.+..++ ++|.|++++.++++++| .|.-|+.|++++ + +-...++++
T Consensus 214 Vsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t-~Yq~eiv~a 291 (550)
T KOG4224|consen 214 VSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-T-EYQREIVEA 291 (550)
T ss_pred hhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-c-hhhhHHHhc
Confidence 344555556666667779999998 444555677 99999999999999999 999999999997 4 445678999
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025 77 GYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKI 126 (129)
Q Consensus 77 g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~l 126 (129)
|.+|.++.+|+++...++-....+|+|+.-+.. | ...+.+.|.+..+
T Consensus 292 g~lP~lv~Llqs~~~plilasVaCIrnisihpl-N--e~lI~dagfl~pL 338 (550)
T KOG4224|consen 292 GSLPLLVELLQSPMGPLILASVACIRNISIHPL-N--EVLIADAGFLRPL 338 (550)
T ss_pred CCchHHHHHHhCcchhHHHHHHHHHhhcccccC-c--ccceecccchhHH
Confidence 999999999998887787788889988742211 1 1235555555443
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.69 E-value=3.1e-07 Score=78.49 Aligned_cols=110 Identities=18% Similarity=0.132 Sum_probs=95.4
Q ss_pred HHHHHH-HHHHhhH--hHH-HHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025 14 KLKENT-LDSNIVV--CMY-TVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88 (129)
Q Consensus 14 ~~r~~w-~lsNI~~--qiq-~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~ 88 (129)
.+|.+. .|.|++. +++ .+.+.|+++.|+.+|++.+.++. -+.+.|.+++... +.-..+.+.|++++|+.++.+
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~--ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK--ENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHhcC
Confidence 455565 8999999 444 35589999999999999999999 9999999999874 455677899999999999999
Q ss_pred CCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 89 SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 89 ~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
++..++..+++.|.|+. ++...+..|.++|+++++..
T Consensus 343 ~~~~l~~~aLrlL~NLS---fd~~~R~~mV~~GlIPkLv~ 379 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLS---FDPELRSQMVSLGLIPKLVE 379 (708)
T ss_pred CCHHHHHHHHHHHHHhC---cCHHHHHHHHHCCCcHHHHH
Confidence 99999999999999985 57888999999999998854
No 13
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.57 E-value=9.4e-07 Score=67.31 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhH--hHHHHH-hhccHHHHHHHhccCChHHH-HHHHHHHHhccCC
Q 044025 13 SKLKENTLDSNIVV--CMYTVI-VANIILLLVHLLQHAELEIK-EATWAISSATYGG 65 (129)
Q Consensus 13 ~~~r~~w~lsNI~~--qiq~vi-~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~ 65 (129)
..-+..++++|.++ ..|.++ +.|.++.+..+|.++++.+| .|.|++.|++...
T Consensus 29 i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 29 IQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence 33334469999988 666666 68999999999999999999 9999999998763
No 14
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.52 E-value=2.3e-07 Score=51.22 Aligned_cols=40 Identities=30% Similarity=0.316 Sum_probs=37.3
Q ss_pred CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 66 SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 66 ~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
++++.+.+++.|++|+|+++|.+.|++++..++++|+|+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999984
No 15
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.51 E-value=9.3e-07 Score=75.58 Aligned_cols=116 Identities=18% Similarity=0.148 Sum_probs=89.0
Q ss_pred ccccCCCCChHHHHH-HHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025 3 IQQKNPKLPLSKLKE-NTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG 77 (129)
Q Consensus 3 i~~~~~~~~~~~~r~-~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g 77 (129)
+..+..+ +...+-. +++|.+++- ....+.+.|++|.|..++.+++.+.+ .|..+|.|++.+. +....+++.|
T Consensus 296 v~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~--~~R~~mV~~G 372 (708)
T PF05804_consen 296 VKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP--ELRSQMVSLG 372 (708)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH--HHHHHHHHCC
Confidence 3344333 3333333 468888887 55667789999999999999999999 9999999999874 5567889999
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025 78 YIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKI 126 (129)
Q Consensus 78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~l 126 (129)
++|+|+.+|.. +.....++..+.++.. +++...++...++++.+
T Consensus 373 lIPkLv~LL~d--~~~~~val~iLy~LS~---dd~~r~~f~~TdcIp~L 416 (708)
T PF05804_consen 373 LIPKLVELLKD--PNFREVALKILYNLSM---DDEARSMFAYTDCIPQL 416 (708)
T ss_pred CcHHHHHHhCC--CchHHHHHHHHHHhcc---CHhhHHHHhhcchHHHH
Confidence 99999999974 4455678888999863 55666777777777665
No 16
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=98.45 E-value=4.8e-07 Score=49.23 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=32.9
Q ss_pred HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025 28 MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATY 63 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~ 63 (129)
.+.+++.|++|.|++++++++.+++ +|+|+|+|++.
T Consensus 5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4567899999999999999999999 99999999873
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.45 E-value=2e-06 Score=71.09 Aligned_cols=113 Identities=17% Similarity=0.116 Sum_probs=96.8
Q ss_pred hHHHHHH-HHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhc
Q 044025 12 LSKLKEN-TLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86 (129)
Q Consensus 12 ~~~~r~~-w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL 86 (129)
...-+.+ -++++++. ..+.+++.+.++.|..++.+.+..+| .+..++.+++.. +++...++.+.|+++.+...|
T Consensus 133 ~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~~~~sgll~~ll~eL 211 (503)
T PF10508_consen 133 LSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-SPEAAEAVVNSGLLDLLLKEL 211 (503)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-CHHHHHHHHhccHHHHHHHHh
Confidence 3334455 49999998 56678899999999999999888999 999999999987 678888889999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 87 VCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 87 ~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
..+|.-+...+++.+..++. ++.-.+.+.+.|++++|..
T Consensus 212 ~~dDiLvqlnalell~~La~---~~~g~~yL~~~gi~~~L~~ 250 (503)
T PF10508_consen 212 DSDDILVQLNALELLSELAE---TPHGLQYLEQQGIFDKLSN 250 (503)
T ss_pred cCccHHHHHHHHHHHHHHHc---ChhHHHHHHhCCHHHHHHH
Confidence 99888899999999999974 6666788999999998753
No 18
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.26 E-value=2.5e-06 Score=49.75 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=37.3
Q ss_pred HHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHh
Q 044025 16 KENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSA 61 (129)
Q Consensus 16 r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni 61 (129)
.++|+|++++. ..+. .-..++|.|..+|++++.+|| .|+|+|+|+
T Consensus 6 ~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 6 AAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45699999886 3333 447899999999999999999 999999985
No 19
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.23 E-value=3.3e-06 Score=49.23 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=44.4
Q ss_pred hHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 49 LEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 49 ~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+.+| .|+|+|++++.+ .+++.+. ....++|.|..+|+.++++++..++++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~-~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG-CPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTT-THHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcc-cHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689 999999998876 4455544 3457999999999988899999999999975
No 20
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.06 E-value=4.1e-05 Score=58.37 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCChHHHHHHHHHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025 9 KLPLSKLKENTLDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL 85 (129)
Q Consensus 9 ~~~~~~~r~~w~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l 85 (129)
.++...+...-.|.|++. ..+.++ ++.+|.++.+|..|+..+| .+.+++.|++.. ++..++++.+++.+.|+.+
T Consensus 107 lns~~Q~agLrlL~nLtv~~~~~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n--p~~~~~Ll~~q~~~~~~~L 183 (254)
T PF04826_consen 107 LNSEVQLAGLRLLTNLTVTNDYHHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN--PDMTRELLSAQVLSSFLSL 183 (254)
T ss_pred CCCHHHHHHHHHHHccCCCcchhhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhccC--HHHHHHHHhccchhHHHHH
Confidence 344444444459999988 555555 5689999999999999999 999999999985 5788999999999999999
Q ss_pred cCCC-CHHHHHHHHHHHhhcc
Q 044025 86 LVCS-DQRIVTVCLNGNRKLG 105 (129)
Q Consensus 86 L~~~-d~~~~~~aL~al~ni~ 105 (129)
++.+ +..+...+|.-.+|+.
T Consensus 184 f~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 184 FNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred HccCCccHHHHHHHHHHHHHH
Confidence 9874 5777888888888873
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.06 E-value=5.1e-05 Score=62.83 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=92.2
Q ss_pred HHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCC
Q 044025 16 KENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSD 90 (129)
Q Consensus 16 r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d 90 (129)
-.++.+.++.. ..+.+.+.+++|.++.++.++|..+. .|+-+|.+++.. +...+.+++.+.++.|.+++...+
T Consensus 96 l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~~l~~~~~ 173 (503)
T PF10508_consen 96 LALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLKSLMSQSS 173 (503)
T ss_pred HHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHHHHHhccC
Confidence 34578888877 56777889999999999999999999 999999999985 256677889999999999998778
Q ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 91 QRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 91 ~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
..++..+++.+.++++ .+++....+.+.|.++++.
T Consensus 174 ~~vR~Rv~el~v~i~~--~S~~~~~~~~~sgll~~ll 208 (503)
T PF10508_consen 174 DIVRCRVYELLVEIAS--HSPEAAEAVVNSGLLDLLL 208 (503)
T ss_pred HHHHHHHHHHHHHHHh--cCHHHHHHHHhccHHHHHH
Confidence 7888889999999864 5788889999999988865
No 22
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00012 Score=57.71 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=74.9
Q ss_pred hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCH-HHHHHHHHHHhhc
Q 044025 27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQ-RIVTVCLNGNRKL 104 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~-~~~~~aL~al~ni 104 (129)
....++..|.++++...+++.+..+| -|+|+|+-++.. +|.--..+++.|.++.|...|.++++ .....||.|++.+
T Consensus 116 nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qN-NP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissL 194 (342)
T KOG2160|consen 116 NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQN-NPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSL 194 (342)
T ss_pred hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 34556777888888889999999999 999999999998 77766678899999999999987665 4558899999987
Q ss_pred ccCCCChHHHHHHHhccchhhh
Q 044025 105 GMDNRVNVYTQMINECDGLDKI 126 (129)
Q Consensus 105 ~~~~~~~~~~~~i~e~ggl~~l 126 (129)
.+ ...+....+...+|...|
T Consensus 195 IR--n~~~g~~~fl~~~G~~~L 214 (342)
T KOG2160|consen 195 IR--NNKPGQDEFLKLNGYQVL 214 (342)
T ss_pred Hh--cCcHHHHHHHhcCCHHHH
Confidence 43 344444555555555443
No 23
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.93 E-value=2.7e-05 Score=42.09 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=34.7
Q ss_pred HHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 68 EHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 68 ~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
++..++++.|++|+|+.+|.+++++++..++++|+|+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46678889999999999999999999999999999984
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.86 E-value=2.8e-05 Score=48.78 Aligned_cols=57 Identities=23% Similarity=0.319 Sum_probs=48.5
Q ss_pred HHHHHHHh-ccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 37 ILLLVHLL-QHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 37 lp~L~~ll-~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+|.|++.| +++++.+| +|+++++++- ++ .++|.|..++.++|+.++..++++++++.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP---------EAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 58899998 88899999 9999999542 22 25889999999999999999999999874
No 25
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.00027 Score=56.10 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=80.1
Q ss_pred hHHHHHhhccHHHHHHHhc-cCChHHH-HHHHHHHHhccCCC--------HHHHHHHHhcCChHHHHhhcCC-CCHHHHH
Q 044025 27 CMYTVIVANIILLLVHLLQ-HAELEIK-EATWAISSATYGGS--------HEHIQFLVSQGYIKPLCDLLVC-SDQRIVT 95 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~~~~~--------~~~i~~lv~~g~i~~l~~lL~~-~d~~~~~ 95 (129)
.-|.+.+.+++|.+...|. ++..++- |++|+++-+....+ ..+.+.+++.|.+..|.+.|.. -||....
T Consensus 181 nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~ 260 (461)
T KOG4199|consen 181 NRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLV 260 (461)
T ss_pred HHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHH
Confidence 3556779999999996655 4666676 99999999987532 3567788888999999999975 7788888
Q ss_pred HHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 96 VCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 96 ~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
-..-+|+.++ ..+++|+.|.|.|||+.+-
T Consensus 261 ~l~~tl~~lA---Vr~E~C~~I~e~GGl~tl~ 289 (461)
T KOG4199|consen 261 SLSTTLKALA---VRDEICKSIAESGGLDTLL 289 (461)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHccCHHHHH
Confidence 8888999886 3789999999999999764
No 26
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.69 E-value=0.00025 Score=55.16 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=81.0
Q ss_pred HHHHHhhH--hHHHH-HhhccHHHHHHHh-----c--cCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC
Q 044025 19 TLDSNIVV--CMYTV-IVANIILLLVHLL-----Q--HAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV 87 (129)
Q Consensus 19 w~lsNI~~--qiq~v-i~~g~lp~L~~ll-----~--~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~ 87 (129)
.+++++.+ +.+.+ .++|.++.+.+++ . ..+..++ +++.++=-++-. ++-+..+.+.+++|.+++++.
T Consensus 172 ~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~~~~~~~i~~L~~i~~ 249 (312)
T PF03224_consen 172 QCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE--PEIAEELNKKYLIPLLADILK 249 (312)
T ss_dssp HHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS--HHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC--HHHHHHHhccchHHHHHHHHH
Confidence 58888888 55444 4899999999999 2 3466777 988888777764 467788889999999999996
Q ss_pred -CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 88 -CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 88 -~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
+...+++++++.++.|+... ..+.....+.++|+++.++.
T Consensus 250 ~~~KEKvvRv~la~l~Nl~~~-~~~~~~~~mv~~~~l~~l~~ 290 (312)
T PF03224_consen 250 DSIKEKVVRVSLAILRNLLSK-APKSNIELMVLCGLLKTLQN 290 (312)
T ss_dssp H--SHHHHHHHHHHHHHTTSS-SSTTHHHHHHHH-HHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHhc-cHHHHHHHHHHccHHHHHHH
Confidence 47899999999999999632 23337788899999887754
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.68 E-value=0.00019 Score=44.92 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025 10 LPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88 (129)
Q Consensus 10 ~~~~~~r~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~ 88 (129)
.+......+++++++.. ..++|.|.++++++++.+| .|+|+++.+- ++ .+++.|..++..
T Consensus 13 ~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---~~---------~~~~~L~~~l~~ 73 (88)
T PF13646_consen 13 DPQVRAEAARALGELGD-------PEAIPALIELLKDEDPMVRRAAARALGRIG---DP---------EAIPALIKLLQD 73 (88)
T ss_dssp SHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---HH---------HTHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---CH---------HHHHHHHHHHcC
Confidence 34444445578887632 2468999999999999999 9999999872 22 277888888876
Q ss_pred C-CHHHHHHHHHHHh
Q 044025 89 S-DQRIVTVCLNGNR 102 (129)
Q Consensus 89 ~-d~~~~~~aL~al~ 102 (129)
+ +..+...+.++|+
T Consensus 74 ~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 74 DDDEVVREAAAEALG 88 (88)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhcC
Confidence 4 4556777888774
No 28
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00066 Score=53.97 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=89.2
Q ss_pred HHHHHH-HHHHHhhH-------------hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhc
Q 044025 13 SKLKEN-TLDSNIVV-------------CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQ 76 (129)
Q Consensus 13 ~~~r~~-w~lsNI~~-------------qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~ 76 (129)
...|++ |++.-+.. +.+.+...|++..|++.+.-+ |+++- +++-+++.++.. + +--+.+.+.
T Consensus 205 ~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~-E~C~~I~e~ 282 (461)
T KOG4199|consen 205 RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-D-EICKSIAES 282 (461)
T ss_pred HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-H-HHHHHHHHc
Confidence 466776 78877765 566777788999999999976 89999 999999999986 2 666777899
Q ss_pred CChHHHHhhcCC-CCH---HHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 77 GYIKPLCDLLVC-SDQ---RIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 77 g~i~~l~~lL~~-~d~---~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
|.++.+..++.. ++. .+.+.++..|+.++ |++.....|.+.||+++|..
T Consensus 283 GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA---G~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 283 GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA---GSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh---CCCchHHHHHHhcChHHHHH
Confidence 999999999976 333 35567777777776 57777889999999999864
No 29
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00014 Score=63.06 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=69.6
Q ss_pred hccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHhhcccCCCC
Q 044025 34 ANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-CSDQRIVTVCLNGNRKLGMDNRV 110 (129)
Q Consensus 34 ~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~~d~~~~~~aL~al~ni~~~~~~ 110 (129)
.-++|.|+.+|++. ++|++ .||.|++|++.- -|.-...+|+.++||.|+.=|. -+.-++.+++|+|++.|.+
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev-lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---- 284 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEV-LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---- 284 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh-ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh----
Confidence 45789999999985 89999 999999999975 5666788999999999999554 4778899999999999853
Q ss_pred hHHHHHHHhccchh
Q 044025 111 NVYTQMINECDGLD 124 (129)
Q Consensus 111 ~~~~~~i~e~ggl~ 124 (129)
.....+.++|+|.
T Consensus 285 -~H~~AiL~AG~l~ 297 (1051)
T KOG0168|consen 285 -RHPKAILQAGALS 297 (1051)
T ss_pred -hccHHHHhcccHH
Confidence 2233567777764
No 30
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.55 E-value=0.00028 Score=60.37 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=73.2
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHH
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVY 113 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~ 113 (129)
=+|..+.+|.+.++.+| .|+.-+-.++.|. ..++.-+ +.|-|+.|+.+|.+...+++..+..+++|+.....+..-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd--~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD--NKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhh--HHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 46888999999999999 9999999999984 3455555 679999999999999999999999999998533233223
Q ss_pred HHHHHhccchhhhc
Q 044025 114 TQMINECDGLDKIE 127 (129)
Q Consensus 114 ~~~i~e~ggl~~le 127 (129)
.-.|.+++|+..+-
T Consensus 312 Klai~~~~Gv~~l~ 325 (717)
T KOG1048|consen 312 KLAIKELNGVPTLV 325 (717)
T ss_pred chhhhhcCChHHHH
Confidence 45688999987764
No 31
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.50 E-value=0.00057 Score=58.52 Aligned_cols=110 Identities=17% Similarity=0.129 Sum_probs=87.0
Q ss_pred HHHHH-HHHHHhhH-------hH-HHH-HhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH
Q 044025 14 KLKEN-TLDSNIVV-------CM-YTV-IVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL 82 (129)
Q Consensus 14 ~~r~~-w~lsNI~~-------qi-q~v-i~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l 82 (129)
.++++ -+|=|+++ .+ +.+ -....+|.++++|+.+|.++. .++-+|.|++.+ -+.+.++..+++|-|
T Consensus 535 TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d---~rnk~ligk~a~~~l 611 (717)
T KOG1048|consen 535 TLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD---IRNKELIGKYAIPDL 611 (717)
T ss_pred HHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC---chhhhhhhcchHHHH
Confidence 33444 49999999 22 334 246789999999999999999 999999999998 457788889999999
Q ss_pred HhhcCCCC------HHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 83 CDLLVCSD------QRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 83 ~~lL~~~d------~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
++.|.... .+++..++.++-|+.. ..-..+.-+.+.+|+++|-.
T Consensus 612 v~~Lp~~~~~~~~sedtv~~vc~tl~niv~--~~~~nAkdl~~~~g~~kL~~ 661 (717)
T KOG1048|consen 612 VRCLPGSGPSTSLSEDTVRAVCHTLNNIVR--KNVLNAKDLLEIKGIPKLRL 661 (717)
T ss_pred HHhCcCCCCCcCchHHHHHHHHHhHHHHHH--HhHHHHHHHHhccChHHHHH
Confidence 99997532 5788889999998842 35566777889999998753
No 32
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.27 E-value=0.0023 Score=41.95 Aligned_cols=82 Identities=11% Similarity=0.172 Sum_probs=59.3
Q ss_pred HHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHH
Q 044025 19 TLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRI 93 (129)
Q Consensus 19 w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~ 93 (129)
++|+.++- ++..-+ ..++|++...+.+.|.+|| .||-++.|++.....+-+.++ ..+++.|+.+....|+.+
T Consensus 8 i~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~D~d~~V 84 (97)
T PF12755_consen 8 IGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSADPDENV 84 (97)
T ss_pred HHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCchhH
Confidence 57777655 333322 5689999999999999999 999999999976432222222 358899999998888887
Q ss_pred HHHHHHHHhhc
Q 044025 94 VTVCLNGNRKL 104 (129)
Q Consensus 94 ~~~aL~al~ni 104 (129)
.. +.+.+.++
T Consensus 85 r~-~a~~Ld~l 94 (97)
T PF12755_consen 85 RS-AAELLDRL 94 (97)
T ss_pred HH-HHHHHHHH
Confidence 55 44656554
No 33
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.24 E-value=0.00047 Score=35.62 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=24.9
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATY 63 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~ 63 (129)
++|.+.+++++++++|| .|++++++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 58999999999999999 99999999874
No 34
>PRK09687 putative lyase; Provisional
Probab=97.00 E-value=0.0032 Score=48.56 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=39.0
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
..+|.|+.+|++.++++| .|+++|+++..+ ++ .+++.|..+|...+..+...++++|+++
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~-~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSNKYD-NP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC-CH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 467788888888888888 888888877332 22 1344555555556666666666666554
No 35
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.93 E-value=0.0057 Score=38.09 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHhhcccCCCChHHHHHHHhcc
Q 044025 51 IKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECD 121 (129)
Q Consensus 51 v~eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~g 121 (129)
+|.|.||++|+.+. +.=+.++-+.++++.++++... +-..++-.+..+++-+++ +.+-++.+.+.|
T Consensus 4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~---T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS---TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC---CHHHHHHHHHcC
Confidence 34899999999875 2445556678999999998874 668899999999999874 777788887776
No 36
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.018 Score=45.66 Aligned_cols=89 Identities=17% Similarity=0.074 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhH---hH-HHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025 15 LKENTLDSNIVV---CM-YTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88 (129)
Q Consensus 15 ~r~~w~lsNI~~---qi-q~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~ 88 (129)
.+++|+++-.+. .+ +.+++.|.++.|+..+++. +..+| .|.+|+|++...--+. +..+...+-...|.+.|..
T Consensus 142 ~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g-~~~fl~~~G~~~L~~vl~~ 220 (342)
T KOG2160|consen 142 ELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG-QDEFLKLNGYQVLRDVLQS 220 (342)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH-HHHHHhcCCHHHHHHHHHc
Confidence 346688887666 33 4577999999999999976 55778 9999999999874444 4455666669999999987
Q ss_pred --CCHHHHHHHHHHHhhc
Q 044025 89 --SDQRIVTVCLNGNRKL 104 (129)
Q Consensus 89 --~d~~~~~~aL~al~ni 104 (129)
.+.++.+.++.-+..+
T Consensus 221 ~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 221 NNTSVKLKRKALFLLSLL 238 (342)
T ss_pred CCcchHHHHHHHHHHHHH
Confidence 6678888888877765
No 37
>PRK09687 putative lyase; Provisional
Probab=96.64 E-value=0.0079 Score=46.38 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=40.2
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh-cCCCCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL-LVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l-L~~~d~~~~~~aL~al~ni 104 (129)
..+++.+..++++.++.+| .|+|+|+.+-..... ...+++.|..+ ++.+|+.+...+..+|+++
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-------QDNVFNILNNLALEDKSACVRASAINATGHR 118 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 3466777777788888888 888888887543211 11244555554 4556666666666666665
No 38
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.61 E-value=0.0092 Score=48.97 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=70.3
Q ss_pred HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC---CC----HHHHHHHHHHHh
Q 044025 31 VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC---SD----QRIVTVCLNGNR 102 (129)
Q Consensus 31 vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~---~d----~~~~~~aL~al~ 102 (129)
-|+++++..|.+..+++|.++- +++.+++|+|...+ +-...+.+.|.=..++++|+. .| .+...++---+.
T Consensus 83 ~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~-E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~ 161 (604)
T KOG4500|consen 83 CIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNN-ENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH 161 (604)
T ss_pred hhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCc-hhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence 3789999999999999999999 99999999999854 545566677764455555532 22 366666655566
Q ss_pred hcccCCCChHHHHHHHhccchhhhc
Q 044025 103 KLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 103 ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
|-. .+.+.++..+.+.|.++++.
T Consensus 162 Ny~--l~~~~l~aq~~~~gVl~tL~ 184 (604)
T KOG4500|consen 162 NYI--LDSRELRAQVADAGVLNTLA 184 (604)
T ss_pred Hhh--CCcHHHHHHHHhcccHHHHH
Confidence 652 36888899999999998764
No 39
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.51 E-value=0.023 Score=46.54 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=76.7
Q ss_pred HHHHHhhH--hHHHH-HhhccHHHHHHHhccC--ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-CCH
Q 044025 19 TLDSNIVV--CMYTV-IVANIILLLVHLLQHA--ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-SDQ 91 (129)
Q Consensus 19 w~lsNI~~--qiq~v-i~~g~lp~L~~ll~~~--~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-~d~ 91 (129)
-+++++.+ ..+.+ .+.+.++.|+++|+.. +...+ +++.++==++-.+ +-...+.+.++||.+++++.. ...
T Consensus 166 ~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~--~~~~~~~~~~~i~~l~~i~k~s~KE 243 (429)
T cd00256 166 RCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNP--HAAEVLKRLSLIQDLSDILKESTKE 243 (429)
T ss_pred HHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccH--HHHHhhccccHHHHHHHHHHhhhhH
Confidence 37777777 44544 4778999999999874 55777 8776655555432 333455578999999999974 778
Q ss_pred HHHHHHHHHHhhcccCC----CChHHHHHHHhccchhhhcC
Q 044025 92 RIVTVCLNGNRKLGMDN----RVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 92 ~~~~~aL~al~ni~~~~----~~~~~~~~i~e~ggl~~le~ 128 (129)
+++++++-++.|+.... ....+...+.++|.+..+..
T Consensus 244 KvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~ 284 (429)
T cd00256 244 KVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQS 284 (429)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHH
Confidence 99999999999985321 13345667888888776543
No 40
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.40 E-value=0.026 Score=35.13 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=46.4
Q ss_pred HHHHH-HHHHHhhH---hHHHHHhhccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025 14 KLKEN-TLDSNIVV---CMYTVIVANIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVSQG 77 (129)
Q Consensus 14 ~~r~~-w~lsNI~~---qiq~vi~~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g 77 (129)
.+|.+ |++.||++ -++-+-+.+++|.++++..+ +-..+| =|.|+++=++.. .+=.+.|-+.|
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T--~~G~~~L~~~g 70 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST--EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC--HHHHHHHHHcC
Confidence 45655 99999999 56656678999999999885 577899 999999888874 23344444444
No 41
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.18 E-value=0.13 Score=43.98 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=70.9
Q ss_pred ChHHHH-HHH-HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH-
Q 044025 11 PLSKLK-ENT-LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL- 82 (129)
Q Consensus 11 ~~~~~r-~~w-~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l- 82 (129)
|-.+.. .+. ++.|+.- .-...+..|.+..+...+.+.|+.+| .+.|++.|..-+.. +..+......+-..+
T Consensus 431 p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d-e~~k~~~~~ki~a~~i 509 (678)
T KOG1293|consen 431 PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD-EEEKFQLLAKIPANLI 509 (678)
T ss_pred cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch-HHHHHHHHHHhhHHHH
Confidence 333333 344 9999887 55678899999999999999999999 99999999998865 333333333344333
Q ss_pred HhhcCCCCHHHHHHHHHHHhhcc
Q 044025 83 CDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 83 ~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
..+.+.+|..++..+++-++|+.
T Consensus 510 ~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 510 LDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhh
Confidence 34446799999999999999984
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.16 E-value=0.017 Score=47.29 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=61.1
Q ss_pred HHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025 17 ENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 17 ~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~ 95 (129)
+..+++|++. ..++ ..++|.+.+++.++++.|| .|+-++..+... +|+.+. +. .++.+..+|..+|+.++.
T Consensus 99 AL~~l~~i~~--~~~~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~---~~-~~~~l~~lL~d~~~~V~~ 170 (526)
T PF01602_consen 99 ALRTLSNIRT--PEMA-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVE---DE-LIPKLKQLLSDKDPSVVS 170 (526)
T ss_dssp HHHHHHHH-S--HHHH-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHH---GG-HHHHHHHHTTHSSHHHHH
T ss_pred HHhhhhhhcc--cchh-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHH---HH-HHHHHhhhccCCcchhHH
Confidence 3358888864 2222 3378899999999999999 999999999876 444332 22 688999999889999999
Q ss_pred HHHHHHhhc
Q 044025 96 VCLNGNRKL 104 (129)
Q Consensus 96 ~aL~al~ni 104 (129)
.++.++..+
T Consensus 171 ~a~~~l~~i 179 (526)
T PF01602_consen 171 AALSLLSEI 179 (526)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 43
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.02 E-value=0.083 Score=45.07 Aligned_cols=98 Identities=17% Similarity=0.027 Sum_probs=74.8
Q ss_pred cCCCCChHHHHHHH-HHHHhhHhHHH----HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025 6 KNPKLPLSKLKENT-LDSNIVVCMYT----VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI 79 (129)
Q Consensus 6 ~~~~~~~~~~r~~w-~lsNI~~qiq~----vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i 79 (129)
++|--+..+.+++. ++-+.++.+.+ .-+..+..+|++++..++..++ -+.-|++|++-.=+ .--..++..|.|
T Consensus 385 ~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngI 463 (678)
T KOG1293|consen 385 LPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGI 463 (678)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcH
Confidence 33434445555444 77777663322 2245778899999999999999 99999999997533 223567889999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 80 KPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 80 ~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
..+.+++...|+......+|++++.
T Consensus 464 d~l~s~~~~~~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 464 DILESMLTDPDFNSRANSLWVLRHL 488 (678)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999986
No 44
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.84 E-value=0.02 Score=44.54 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=60.7
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC----CCCHHHHHHHHHHHhhcccCCCC
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV----CSDQRIVTVCLNGNRKLGMDNRV 110 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~----~~d~~~~~~aL~al~ni~~~~~~ 110 (129)
...++..+++++|.-++ -|+..++.+...+...... .. .++++.+.+.|. +++...+..+++++.++.+ .
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~-~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~---~ 180 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEK-LV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR---S 180 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HH-HH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT---S
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccc-hH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC---c
Confidence 67888889999999999 9999999999876533222 11 345566666554 4667788999999999864 7
Q ss_pred hHHHHHHHhccchhhhc
Q 044025 111 NVYTQMINECDGLDKIE 127 (129)
Q Consensus 111 ~~~~~~i~e~ggl~~le 127 (129)
++|+..+-+.||+..+-
T Consensus 181 ~~~R~~f~~~~~v~~l~ 197 (312)
T PF03224_consen 181 KEYRQVFWKSNGVSPLF 197 (312)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred chhHHHHHhcCcHHHHH
Confidence 88999998888887653
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.83 E-value=0.11 Score=37.12 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=65.9
Q ss_pred HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC-hHHHHhhcCCCCHHHHHH
Q 044025 20 LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY-IKPLCDLLVCSDQRIVTV 96 (129)
Q Consensus 20 ~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~-i~~l~~lL~~~d~~~~~~ 96 (129)
+++-++. .-..+ ...+|.+...|+++++.+| .|.-+++++...+- +--.|- +..+..++..+|+++...
T Consensus 11 ~l~DL~~r~~~~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 11 ALGDLCIRYPNLV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHhCcHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHHHHHcCCCHHHHHH
Confidence 7777765 32223 5678999999999999999 99999999987632 111233 377778888899999999
Q ss_pred HHHHHhhcccCCCChHHHHHHHh
Q 044025 97 CLNGNRKLGMDNRVNVYTQMINE 119 (129)
Q Consensus 97 aL~al~ni~~~~~~~~~~~~i~e 119 (129)
|...+..+.+....+.+...+.+
T Consensus 83 A~~~~~e~~~~~~~~~i~~~~~e 105 (178)
T PF12717_consen 83 ARSFFSELLKKRNPNIIYNNFPE 105 (178)
T ss_pred HHHHHHHHHHhccchHHHHHHHH
Confidence 99999887543234545544444
No 46
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.094 Score=47.08 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=74.6
Q ss_pred CcccccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHH
Q 044025 1 MVIQQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLV 74 (129)
Q Consensus 1 ~~i~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv 74 (129)
||+..++.-.|....-++-+++-++. .+|+-...-+.|.|+..+.+. .++++ .|+-|+-|..-+...+.+.--+
T Consensus 393 ~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL 472 (1075)
T KOG2171|consen 393 IVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL 472 (1075)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 46666755555555444459999998 688887788999999999875 77999 9999999998765444443322
Q ss_pred hcCChH-HHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 75 SQGYIK-PLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 75 ~~g~i~-~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+ +++. .|..++.+..+.++..++-+|+.+
T Consensus 473 d-~lm~~~l~~L~~~~~~~v~e~vvtaIasv 502 (1075)
T KOG2171|consen 473 D-GLMEKKLLLLLQSSKPYVQEQAVTAIASV 502 (1075)
T ss_pred H-HHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 2 3344 444455678899999999999875
No 47
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=95.62 E-value=0.074 Score=44.39 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=72.5
Q ss_pred HHHhhccHHHHHHHhccCChHH--H-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHhhcc
Q 044025 30 TVIVANIILLLVHLLQHAELEI--K-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-SDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 30 ~vi~~g~lp~L~~ll~~~~~~v--~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-~d~~~~~~aL~al~ni~ 105 (129)
.+-+.|-+..|+.++..++.+. | ||+..+-.+....+ .++++..| +..++.+-.. ..+++.+.++--|+++.
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN---~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAEN---RDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhh---hhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 3445689999999999986655 9 99999999998744 55777766 5555555443 55788888999999997
Q ss_pred cCCCChHHHHHHHhccchhhhc
Q 044025 106 MDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 106 ~~~~~~~~~~~i~e~ggl~~le 127 (129)
| .+++.++-+.+.||+|++.
T Consensus 251 K--HSeet~~~Lvaa~~lD~vl 270 (832)
T KOG3678|consen 251 K--HSEETCQRLVAAGGLDAVL 270 (832)
T ss_pred h--hhHHHHHHHHhhcccchhe
Confidence 6 5999999999999999864
No 48
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.52 E-value=0.038 Score=37.58 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=55.3
Q ss_pred hccHHHHHHHhc-cCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQ-HAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
..++..|+++|. +.|+.+. =||.-|+.++.. -|. .+.++ +.|+=..++.||+++|+++...||.++..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~-~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH-YPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHH-Chh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 357788999994 4588888 999999999976 344 44555 679999999999999999999999999875
No 49
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.50 E-value=0.095 Score=45.68 Aligned_cols=88 Identities=18% Similarity=0.191 Sum_probs=70.8
Q ss_pred CChHHHHHH--HHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhc
Q 044025 10 LPLSKLKEN--TLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86 (129)
Q Consensus 10 ~~~~~~r~~--w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL 86 (129)
+|..++|.. .++|-+ ..++++ ..+++++.+++.++.+.|| .|+.|+.++-.- ++ ++..+.|.+..+..++
T Consensus 103 d~N~~iR~~AlR~ls~l--~~~el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~---~l~~~~g~~~~l~~l~ 175 (757)
T COG5096 103 DPNEEIRGFALRTLSLL--RVKELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DK---DLYHELGLIDILKELV 175 (757)
T ss_pred CCCHHHHHHHHHHHHhc--ChHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CH---hhhhcccHHHHHHHHh
Confidence 456666653 266655 555554 4688999999999999999 999999999865 22 3555789999999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 044025 87 VCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 87 ~~~d~~~~~~aL~al~ni 104 (129)
..+||.++..|+.++..+
T Consensus 176 ~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 176 ADSDPIVIANALASLAEI 193 (757)
T ss_pred hCCCchHHHHHHHHHHHh
Confidence 999999999999999877
No 50
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.046 Score=48.03 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=73.6
Q ss_pred HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHH
Q 044025 20 LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVC 97 (129)
Q Consensus 20 ~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~a 97 (129)
++--|++ +=.+++.+|.+-..+..|..=...+| -|.-..+|+|..-.++..+++++ ++|.|+.+|...|.+.+..+
T Consensus 278 ALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~ 355 (1051)
T KOG0168|consen 278 ALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESV 355 (1051)
T ss_pred HHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHH
Confidence 5556666 66778899999999999988888999 99999999998877788899987 89999999999999999999
Q ss_pred HHHHhhcc
Q 044025 98 LNGNRKLG 105 (129)
Q Consensus 98 L~al~ni~ 105 (129)
+-++.+++
T Consensus 356 ~ic~~ri~ 363 (1051)
T KOG0168|consen 356 CICLTRIA 363 (1051)
T ss_pred HHHHHHHH
Confidence 99988774
No 51
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.20 E-value=0.19 Score=33.31 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=39.3
Q ss_pred HHHH-HHHHhhH---hHHHHH-hhccHHHHHHHhc--cCChHHH-HHHHHHHHhccCC
Q 044025 16 KENT-LDSNIVV---CMYTVI-VANIILLLVHLLQ--HAELEIK-EATWAISSATYGG 65 (129)
Q Consensus 16 r~~w-~lsNI~~---qiq~vi-~~g~lp~L~~ll~--~~~~~v~-eA~wal~Ni~~~~ 65 (129)
+.+- .++|+|. .+|..+ +.|.+|.+...-. ..+|-+| -|.||+-|++.+.
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 4554 8999999 666655 5677888887744 4588999 9999999999983
No 52
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=95.18 E-value=0.05 Score=50.37 Aligned_cols=94 Identities=19% Similarity=0.144 Sum_probs=77.3
Q ss_pred hHHHHHHH-HHHHhhH-------hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH
Q 044025 12 LSKLKENT-LDSNIVV-------CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL 82 (129)
Q Consensus 12 ~~~~r~~w-~lsNI~~-------qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l 82 (129)
......+- +|-|... +-|.+-+++++..|.+.|++...-+- .+|=+|-|+..- +++.-++|.+.|+++.|
T Consensus 499 LaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mL 577 (2195)
T KOG2122|consen 499 LAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPML 577 (2195)
T ss_pred hhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHH
Confidence 33344444 6666554 44556689999999999999999999 999999999987 66767889999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHhhccc
Q 044025 83 CDLLVCSDQRIVTVCLNGNRKLGM 106 (129)
Q Consensus 83 ~~lL~~~d~~~~~~aL~al~ni~~ 106 (129)
-+|+.+.+..+..-...+|.|+.+
T Consensus 578 rnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 578 RNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHhc
Confidence 999988888888889999999743
No 53
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=95.16 E-value=0.17 Score=35.69 Aligned_cols=88 Identities=20% Similarity=0.217 Sum_probs=69.0
Q ss_pred ccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChH
Q 044025 35 NIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNV 112 (129)
Q Consensus 35 g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~ 112 (129)
+-+..|+.-+.. .+.+.| ...--+.|.+-+ |-...++.+..++..|++.|..+|..++...+-+|.|+. -+..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC---~d~~ 90 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC---LDKT 90 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc---cChH
Confidence 445666666665 477888 777778888875 355678889999999999999999999999999999985 2555
Q ss_pred HHHHHHhccchhhhc
Q 044025 113 YTQMINECDGLDKIE 127 (129)
Q Consensus 113 ~~~~i~e~ggl~~le 127 (129)
-...|.|.+|++.+.
T Consensus 91 n~~~I~ea~g~plii 105 (173)
T KOG4646|consen 91 NAKFIREALGLPLII 105 (173)
T ss_pred HHHHHHHhcCCceEE
Confidence 577899999987653
No 54
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.02 E-value=0.026 Score=28.89 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=24.7
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 78 YIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
++|.+.++++.++++++..++++++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999885
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.95 E-value=0.1 Score=46.24 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=11.5
Q ss_pred HHHHHhccCChHHH-HHHHHHHHh
Q 044025 39 LLVHLLQHAELEIK-EATWAISSA 61 (129)
Q Consensus 39 ~L~~ll~~~~~~v~-eA~wal~Ni 61 (129)
.+...|++++..+| +|+++|+.+
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGA 834 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhc
Confidence 34444555555555 555555443
No 56
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.80 E-value=0.11 Score=42.89 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=65.6
Q ss_pred hHHHHHhhc-cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-----CCHHHHHHHHH
Q 044025 27 CMYTVIVAN-IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-----SDQRIVTVCLN 99 (129)
Q Consensus 27 qiq~vi~~g-~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-----~d~~~~~~aL~ 99 (129)
..|.+...+ ++..+..-+.+.|.+.+ -++-+++|.+... ++-.|+|++|.+..|+++|.. .|...+..++.
T Consensus 306 SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D--~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 306 SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD--DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLS 383 (604)
T ss_pred HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence 567777666 89999999999999999 9999999999863 677799999999999998843 55678888999
Q ss_pred HHhhc
Q 044025 100 GNRKL 104 (129)
Q Consensus 100 al~ni 104 (129)
|++|+
T Consensus 384 ALRnl 388 (604)
T KOG4500|consen 384 ALRNL 388 (604)
T ss_pred HHHhc
Confidence 99996
No 57
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=0.34 Score=43.65 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=70.4
Q ss_pred CCCChHHHHHHH-HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHH
Q 044025 8 PKLPLSKLKENT-LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKP 81 (129)
Q Consensus 8 ~~~~~~~~r~~w-~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~ 81 (129)
+++...+.+++. ++|-|+. ++...+ ..++|..+..|++++++|| -||.|++-++++=- ..++.--..-++|.
T Consensus 358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-p~iqk~~~e~l~~a 435 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-PEIQKKHHERLPPA 435 (1075)
T ss_pred cCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-HHHHHHHHHhccHH
Confidence 445556666665 9999888 333322 5788999999999999999 99999999998733 33444455568888
Q ss_pred HHhhcCC-CCHHHHHHHHHHHhhc
Q 044025 82 LCDLLVC-SDQRIVTVCLNGNRKL 104 (129)
Q Consensus 82 l~~lL~~-~d~~~~~~aL~al~ni 104 (129)
|...+.+ .++++..-+.-++-|.
T Consensus 436 L~~~ld~~~~~rV~ahAa~al~nf 459 (1075)
T KOG2171|consen 436 LIALLDSTQNVRVQAHAAAALVNF 459 (1075)
T ss_pred HHHHhcccCchHHHHHHHHHHHHH
Confidence 9998876 4567777777777654
No 58
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=94.53 E-value=0.32 Score=40.79 Aligned_cols=118 Identities=9% Similarity=0.086 Sum_probs=88.7
Q ss_pred CCCCChHHHHHHH-HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025 7 NPKLPLSKLKENT-LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIK 80 (129)
Q Consensus 7 ~~~~~~~~~r~~w-~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~ 80 (129)
+...++...|..- .+.|+-. ..|.++.+|.+..++--.+..|+++- .|+.|++|++-.+-.+--+.+++..+-.
T Consensus 231 K~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~E 310 (832)
T KOG3678|consen 231 KEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAE 310 (832)
T ss_pred hhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhh
Confidence 3556777878765 8888887 56778999999999888888999998 9999999999776545456778777776
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 81 PLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 81 ~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
-|.-|-.+.|.-+.-.+.-+..-++ ...++-..++.+|-+.-.|
T Consensus 311 WLF~LA~skDel~R~~AClAV~vla---t~KE~E~~VrkS~TlaLVE 354 (832)
T KOG3678|consen 311 WLFPLAFSKDELLRLHACLAVAVLA---TNKEVEREVRKSGTLALVE 354 (832)
T ss_pred hhhhhhcchHHHHHHHHHHHHhhhh---hhhhhhHHHhhccchhhhh
Confidence 6666666677777666777777664 2556666777777765544
No 59
>PF05536 Neurochondrin: Neurochondrin
Probab=94.38 E-value=0.29 Score=41.25 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=67.5
Q ss_pred ChHHHHHH-HHHHHhhH--hH---HHHHhhccHHHHHHHhccCCh-HHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH
Q 044025 11 PLSKLKEN-TLDSNIVV--CM---YTVIVANIILLLVHLLQHAEL-EIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL 82 (129)
Q Consensus 11 ~~~~~r~~-w~lsNI~~--qi---q~vi~~g~lp~L~~ll~~~~~-~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l 82 (129)
+..++.-+ ..++-.|+ .+ .++ -+-+|.|++++.+.+. .+. +|.-+|..++. +++=.+.+++.|.++.|
T Consensus 70 ~~~~~~LavsvL~~f~~~~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias--~~~G~~aLl~~g~v~~L 145 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCRDPELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIAS--SPEGAKALLESGAVPAL 145 (543)
T ss_pred HHHHHHHHHHHHHHHcCChhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc--CcHhHHHHHhcCCHHHH
Confidence 34554444 37777777 22 334 4689999999988766 888 99999999994 44667889999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHhhc
Q 044025 83 CDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 83 ~~lL~~~d~~~~~~aL~al~ni 104 (129)
++.+.. .+.....++..+.++
T Consensus 146 ~ei~~~-~~~~~E~Al~lL~~L 166 (543)
T PF05536_consen 146 CEIIPN-QSFQMEIALNLLLNL 166 (543)
T ss_pred HHHHHh-CcchHHHHHHHHHHH
Confidence 999875 666677777777665
No 60
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.09 E-value=0.55 Score=31.05 Aligned_cols=54 Identities=17% Similarity=0.106 Sum_probs=43.1
Q ss_pred HH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC--CCCHHHHHHHHHHHhhcc
Q 044025 51 IK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV--CSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 51 v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~--~~d~~~~~~aL~al~ni~ 105 (129)
.| +..-.|+|++.. ++.--..+.+.|.||.+++.-. ..+|-+.+-++++|+|+.
T Consensus 2 ~K~~lvrlianl~~~-~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~ 58 (102)
T PF09759_consen 2 FKRDLVRLIANLCYK-NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLC 58 (102)
T ss_pred cHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence 46 788899999987 5454456668899999998654 467999999999999984
No 61
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=0.58 Score=39.38 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=81.0
Q ss_pred HHHHHH-HHHHhhH--hH-HHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025 14 KLKENT-LDSNIVV--CM-YTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88 (129)
Q Consensus 14 ~~r~~w-~lsNI~~--qi-q~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~ 88 (129)
.+|.+. .+-|++. .. .+..+.+++..|+..|...+++.- -..--+--+.--+. .-..+.+.|++..|..+...
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~e--NK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDE--NKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhcc--chHHHHhccHHHHHHHhcCC
Confidence 456665 8889988 32 234578999999999999988887 65555555554332 22345678999999999999
Q ss_pred CCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 89 SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 89 ~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
++++++...+.-+-|+. ++-..+..+...|.++++-.
T Consensus 357 ~h~dL~~~tl~LlfNlS---FD~glr~KMv~~GllP~l~~ 393 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLS---FDSGLRPKMVNGGLLPHLAS 393 (791)
T ss_pred CCHHHHHHHHHHhhhcc---ccccccHHHhhccchHHHHH
Confidence 99999999999988874 34444556778888887643
No 62
>PTZ00429 beta-adaptin; Provisional
Probab=93.97 E-value=0.3 Score=42.73 Aligned_cols=87 Identities=10% Similarity=0.084 Sum_probs=65.7
Q ss_pred hHHHHHH--HHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025 12 LSKLKEN--TLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88 (129)
Q Consensus 12 ~~~~r~~--w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~ 88 (129)
....|.. .++|+|- ...++ .-+++.+.+.+.+.++.|| .|+.++..+... +++ .+.+.|.++.+.++|..
T Consensus 118 Np~IRaLALRtLs~Ir--~~~i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~-~pe---lv~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 118 SPVVRALAVRTMMCIR--VSSVL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD-DMQ---LFYQQDFKKDLVELLND 190 (746)
T ss_pred CHHHHHHHHHHHHcCC--cHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-Ccc---cccccchHHHHHHHhcC
Confidence 3445543 3777774 33332 2366778888999999999 999999999875 433 23456888999999999
Q ss_pred CCHHHHHHHHHHHhhcc
Q 044025 89 SDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 89 ~d~~~~~~aL~al~ni~ 105 (129)
+|+.++..|+.++..+.
T Consensus 191 ~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVN 207 (746)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 99999999999998874
No 63
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=0.26 Score=41.74 Aligned_cols=87 Identities=17% Similarity=0.131 Sum_probs=69.7
Q ss_pred HHH--HHHHhhHhH----HHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCC
Q 044025 17 ENT--LDSNIVVCM----YTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89 (129)
Q Consensus 17 ~~w--~lsNI~~qi----q~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~ 89 (129)
.+| ++--+++.+ --+.+..+...|+++|++++..+. -+.-++||...--+ ..-..+++.|+|..+.+++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fs-nL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFS-NLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeecc-chHHHHHHhhHHHHHHHHhhcc
Confidence 455 444555511 124578899999999999999999 99999999987644 2334677999999999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 044025 90 DQRIVTVCLNGNRKL 104 (129)
Q Consensus 90 d~~~~~~aL~al~ni 104 (129)
|..++...+|.++++
T Consensus 486 DdaLqans~wvlrHl 500 (743)
T COG5369 486 DDALQANSEWVLRHL 500 (743)
T ss_pred hhhhhhcchhhhhhh
Confidence 999999999999976
No 64
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.60 E-value=1 Score=36.73 Aligned_cols=87 Identities=17% Similarity=-0.032 Sum_probs=67.0
Q ss_pred CCChHHHHHHH-HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025 9 KLPLSKLKENT-LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL 85 (129)
Q Consensus 9 ~~~~~~~r~~w-~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l 85 (129)
+......|-++ +++.+.. .-+..+ =++..+..=|.++++.+| -|..+++|+.+ ++-.+. +++.+..+
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~~~~--l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~-----l~~~v~~l 122 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPELLI--LIINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEP-----LIPDVIKL 122 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHHHHH--HHHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcchhHHH--HHHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhH-----HHHHHHHH
Confidence 66677777777 8888887 333221 156677777889999999 99999999984 355544 47888999
Q ss_pred cCCCCHHHHHHHHHHHhhcc
Q 044025 86 LVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 86 L~~~d~~~~~~aL~al~ni~ 105 (129)
|.++++.+++.|+-++.++.
T Consensus 123 l~~~~~~VRk~A~~~l~~i~ 142 (526)
T PF01602_consen 123 LSDPSPYVRKKAALALLKIY 142 (526)
T ss_dssp HHSSSHHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHh
Confidence 99999999999999998874
No 65
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=93.50 E-value=0.92 Score=32.08 Aligned_cols=83 Identities=10% Similarity=-0.019 Sum_probs=65.5
Q ss_pred HHHHhhH-hH--HHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025 20 LDSNIVV-CM--YTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 20 ~lsNI~~-qi--q~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~ 95 (129)
-+.|.+- ++ ..+-..+++..+++.|+..+.... -+.-.+||+|.+. ...+.+++++-+|..+..+.+.....+.
T Consensus 40 NLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~--~n~~~I~ea~g~plii~~lssp~e~tv~ 117 (173)
T KOG4646|consen 40 NLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK--TNAKFIREALGLPLIIFVLSSPPEITVH 117 (173)
T ss_pred HHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh--HHHHHHHHhcCCceEEeecCCChHHHHH
Confidence 4455544 33 334567899999999999999999 9999999999864 4567888999999999999887777777
Q ss_pred HHHHHHhhc
Q 044025 96 VCLNGNRKL 104 (129)
Q Consensus 96 ~aL~al~ni 104 (129)
.++-++..+
T Consensus 118 sa~~~l~~l 126 (173)
T KOG4646|consen 118 SAALFLQLL 126 (173)
T ss_pred HHHHHHHHh
Confidence 777777554
No 66
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=92.89 E-value=0.45 Score=44.56 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=61.2
Q ss_pred HhhccHHHHHHHhccCC---hHHH-HHHHHHHHhccCCCHHHHHHHHhcCC------hHHHHhhc----CC-----CCHH
Q 044025 32 IVANIILLLVHLLQHAE---LEIK-EATWAISSATYGGSHEHIQFLVSQGY------IKPLCDLL----VC-----SDQR 92 (129)
Q Consensus 32 i~~g~lp~L~~ll~~~~---~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~------i~~l~~lL----~~-----~d~~ 92 (129)
...|.+|.|+++|..+| .+.| +|--+|-|++.. .+++-+.=-+..+ |...|..+ .. .+..
T Consensus 232 R~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhS-qPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~ 310 (2195)
T KOG2122|consen 232 RRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHS-QPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS 310 (2195)
T ss_pred HhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhc-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 35899999999999754 4778 999999999986 3332111111112 22223322 21 2223
Q ss_pred HHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025 93 IVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 93 ~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L 129 (129)
.......|+.-+-|..++++|+..+-|.|||..|-+|
T Consensus 311 ~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeL 347 (2195)
T KOG2122|consen 311 DEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAEL 347 (2195)
T ss_pred cchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHH
Confidence 3344444555554556899999999999999987553
No 67
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=1.2 Score=39.21 Aligned_cols=105 Identities=23% Similarity=0.207 Sum_probs=79.4
Q ss_pred HHHHhhH----hHHHHH-h-hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc-CChHHHHhhcCC---
Q 044025 20 LDSNIVV----CMYTVI-V-ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ-GYIKPLCDLLVC--- 88 (129)
Q Consensus 20 ~lsNI~~----qiq~vi-~-~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~-g~i~~l~~lL~~--- 88 (129)
.+|++-+ +.|..+ . .-.+..++.+|.+.-.-+| ||..-|+-++.+ + .+++.+|.. +++..|.+++..
T Consensus 145 Llsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~-n-~~IQKlVAFENaFerLfsIIeeEGg 222 (970)
T KOG0946|consen 145 LLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKD-N-SSIQKLVAFENAFERLFSIIEEEGG 222 (970)
T ss_pred HHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHcc-C-chHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6677666 455543 2 4678899999999999999 999999999987 4 578888864 899999999964
Q ss_pred CCH-HHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 89 SDQ-RIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 89 ~d~-~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
.|. -++.-||.-+-|+.|.+.+| ...+.|.+.++++..
T Consensus 223 ~dGgIVveDCL~ll~NLLK~N~SN--Q~~FrE~~~i~rL~k 261 (970)
T KOG0946|consen 223 LDGGIVVEDCLILLNNLLKNNISN--QNFFREGSYIPRLLK 261 (970)
T ss_pred CCCcchHHHHHHHHHHHHhhCcch--hhHHhccccHHHHHh
Confidence 343 56677888888886543333 456888888888764
No 68
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.61 E-value=0.93 Score=29.51 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=34.1
Q ss_pred HHHHHHHhhH-hHHHHHh--hccHHHHHHHhccCChHHHHHHHHHHHhc
Q 044025 17 ENTLDSNIVV-CMYTVIV--ANIILLLVHLLQHAELEIKEATWAISSAT 62 (129)
Q Consensus 17 ~~w~lsNI~~-qiq~vi~--~g~lp~L~~ll~~~~~~v~eA~wal~Ni~ 62 (129)
++-++-||+. .-..++. ..+++.|..+....|+.||.+++.+-++.
T Consensus 47 AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 47 ACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 3349999998 3333333 57889999999999999996667776654
No 69
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.54 E-value=0.48 Score=42.11 Aligned_cols=61 Identities=18% Similarity=0.057 Sum_probs=37.1
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
...+|.|..+|++++..+| .|+-+|..+.... ...+.+...|.++|+.++..++++|+.+.
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~ 712 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----------PPAPALRDHLGSPDPVVRAAALDVLRALR 712 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----------CchHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 3455555555555555555 5555554442210 12356677777788888888888887763
No 70
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=0.7 Score=38.91 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=71.1
Q ss_pred CCCCChHHHHHHH-HHHHhhH---hHHHHH-hhccHHHHHHHhccC--ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025 7 NPKLPLSKLKENT-LDSNIVV---CMYTVI-VANIILLLVHLLQHA--ELEIK-EATWAISSATYGGSHEHIQFLVSQGY 78 (129)
Q Consensus 7 ~~~~~~~~~r~~w-~lsNI~~---qiq~vi-~~g~lp~L~~ll~~~--~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~ 78 (129)
+-+++-+|.-+|. ++.|++. .-..++ +.+++|.+-+.|.-+ +.+.. +..-+++-++.+. ....-+..+|+
T Consensus 514 ~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~--~cA~Lla~a~~ 591 (791)
T KOG1222|consen 514 KNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL--DCARLLAPAKL 591 (791)
T ss_pred hcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh--HHHHHhCcccc
Confidence 3455667777886 9999887 445555 579999999999875 67788 9998888887763 34445557899
Q ss_pred hHHHHhhcCC--CCHHHHHHHHHHHhhc
Q 044025 79 IKPLCDLLVC--SDQRIVTVCLNGNRKL 104 (129)
Q Consensus 79 i~~l~~lL~~--~d~~~~~~aL~al~ni 104 (129)
|+.|+++|+. .|.+++.+++.....+
T Consensus 592 i~tlieLL~a~QeDDEfV~QiiyVF~Q~ 619 (791)
T KOG1222|consen 592 IDTLIELLQACQEDDEFVVQIIYVFLQF 619 (791)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 9999999975 6667766666665443
No 71
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.69 E-value=1.3 Score=28.57 Aligned_cols=67 Identities=9% Similarity=0.021 Sum_probs=53.2
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhccc
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGM 106 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~ 106 (129)
.+...+..+.++.+-+| ++..-|+.++...+ ..+. -.+++..+.+.|..+|+-+--.|.+++..++.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 34556777888999999 99999999998754 1111 24678889999999999999999999988764
No 72
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.51 E-value=0.52 Score=40.84 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=60.6
Q ss_pred HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc--CChHHHHhhcCCCCHHHHH
Q 044025 20 LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ--GYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 20 ~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~--g~i~~l~~lL~~~d~~~~~ 95 (129)
+++|+-. ++-.+ ++|.|-+.|.+.+..+| .+..|++.++-|.- ++++.. .++|.|..+|....+-++.
T Consensus 381 VLanvf~~elL~~----l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM----~g~~p~LpeLip~l~~~L~DKkplVRs 452 (885)
T KOG2023|consen 381 VLANVFGDELLPI----LLPLLKEHLSSEEWKVREAGVLALGAIAEGCM----QGFVPHLPELIPFLLSLLDDKKPLVRS 452 (885)
T ss_pred HHHHhhHHHHHHH----HHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh----hhcccchHHHHHHHHHHhccCccceee
Confidence 6777754 33333 78888888999999999 99999999998853 344432 4789999999988898999
Q ss_pred HHHHHHhhc
Q 044025 96 VCLNGNRKL 104 (129)
Q Consensus 96 ~aL~al~ni 104 (129)
...|++++-
T Consensus 453 ITCWTLsRy 461 (885)
T KOG2023|consen 453 ITCWTLSRY 461 (885)
T ss_pred eeeeeHhhh
Confidence 999999875
No 73
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=88.54 E-value=0.93 Score=35.12 Aligned_cols=55 Identities=27% Similarity=0.311 Sum_probs=44.4
Q ss_pred hhccHHHHHHHhccCChHHH-HHHHHHHHhccCC------CHHHHH-------HHHhcCChHHHHhhcC
Q 044025 33 VANIILLLVHLLQHAELEIK-EATWAISSATYGG------SHEHIQ-------FLVSQGYIKPLCDLLV 87 (129)
Q Consensus 33 ~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~------~~~~i~-------~lv~~g~i~~l~~lL~ 87 (129)
+...+..+++-|.+++...| +|+-+|.+++.|. ..+|++ .+.+.|+++++.++|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 35677889999999999999 9999999999883 245554 3447899999999885
No 74
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.51 E-value=1.4 Score=38.46 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=57.5
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
-+.-++...++++++.+| -|+-.+.++-.- + .+...+.|.++.|.+++..+||.++.+|+.++..|.
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~-~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI-D---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcC-C---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 466788899999999999 999888888775 2 345668899999999999999999999999999874
No 75
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=88.37 E-value=1.7 Score=33.58 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=42.3
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-CSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~~d~~~~~~aL~al~ni 104 (129)
.-.+|.+.+++.+.++.+| .|+++++++-.. + .++++..+|. +.+..++..+.++|+.+
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~---------a~~~li~~l~~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELGDP---E---------AVPPLVELLENDENEGVRAAAARALGKL 133 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---h---------HHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence 3467777788888888888 888877655432 2 4566777776 47788888888888776
No 76
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=88.31 E-value=2.7 Score=32.27 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=48.8
Q ss_pred HHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 54 ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 54 A~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
|.-+|--++-- .|.--..+-+...+..|+++|. ...+.+...+|+++-.+. -+.......+|+++|+..+-
T Consensus 111 aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iL--ld~p~N~r~FE~~~Gl~~v~ 182 (257)
T PF08045_consen 111 ALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCIL--LDSPENQRDFEELNGLSTVC 182 (257)
T ss_pred HHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHH--HcChHHHHHHHHhCCHHHHH
Confidence 33444444432 2333334557789999999995 467889999999998763 23555566899999998764
No 77
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=87.99 E-value=6.5 Score=36.49 Aligned_cols=103 Identities=22% Similarity=0.125 Sum_probs=75.8
Q ss_pred HHHHHHhhH---hHHHHHh-----hccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC
Q 044025 18 NTLDSNIVV---CMYTVIV-----ANIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV 87 (129)
Q Consensus 18 ~w~lsNI~~---qiq~vi~-----~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~ 87 (129)
..++.|+.. ..-.|+- -|.+|.+..++.. ++++++ =|.-+++-+++. .+.+..+++.|++..|..+|
T Consensus 1746 LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lL- 1822 (2235)
T KOG1789|consen 1746 LTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLL- 1822 (2235)
T ss_pred HHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHH-
Confidence 358999877 3333332 3788888888775 688999 888888777765 37888999999999999987
Q ss_pred CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025 88 CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKI 126 (129)
Q Consensus 88 ~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~l 126 (129)
++-|+.+.-+|+.+..+.. +.+....-.+.||+..|
T Consensus 1823 HS~PS~R~~vL~vLYAL~S---~~~i~keA~~hg~l~yi 1858 (2235)
T KOG1789|consen 1823 HSQPSMRARVLDVLYALSS---NGQIGKEALEHGGLMYI 1858 (2235)
T ss_pred hcChHHHHHHHHHHHHHhc---CcHHHHHHHhcCchhhh
Confidence 5688999999999987742 44455555666766544
No 78
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=87.60 E-value=3.6 Score=33.23 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=66.3
Q ss_pred hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh---cCCCCHHHHH-HHHHHH
Q 044025 27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL---LVCSDQRIVT-VCLNGN 101 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l---L~~~d~~~~~-~aL~al 101 (129)
.|+-|++++++|.++..+.+.|.++- .|.-.++.++-. ++-...+++.+.+.++..- .+++| +.+ .+++-|
T Consensus 120 eillvvNaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcnd--iaRvRVleLI 195 (524)
T KOG4413|consen 120 EILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCND--IARVRVLELI 195 (524)
T ss_pred HHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhhh--HHHHHHHHHH
Confidence 67888999999999999999999999 999999999874 4566677777777766553 23333 222 245555
Q ss_pred hhcccCCCChHHHHHHHhccchhhhc
Q 044025 102 RKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 102 ~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
-.+. .-+.........+|.++-++
T Consensus 196 ieif--SiSpesaneckkSGLldlLe 219 (524)
T KOG4413|consen 196 IEIF--SISPESANECKKSGLLDLLE 219 (524)
T ss_pred HHHH--hcCHHHHhHhhhhhHHHHHH
Confidence 4442 23455555666677776655
No 79
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=87.45 E-value=9.3 Score=27.95 Aligned_cols=85 Identities=12% Similarity=-0.029 Sum_probs=57.9
Q ss_pred HHHHHhhH---hHHHHH----------------hhccHHHHHHHhcc------CChHHH-HHHHHHHHhccCCCHHHHHH
Q 044025 19 TLDSNIVV---CMYTVI----------------VANIILLLVHLLQH------AELEIK-EATWAISSATYGGSHEHIQF 72 (129)
Q Consensus 19 w~lsNI~~---qiq~vi----------------~~g~lp~L~~ll~~------~~~~v~-eA~wal~Ni~~~~~~~~i~~ 72 (129)
-.|||+|+ -...++ ....+..|++.+.. ...+-- -.+.+++|++.- ++-.++
T Consensus 17 MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~--~~gR~~ 94 (192)
T PF04063_consen 17 MLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL--PEGRQF 94 (192)
T ss_pred HHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC--HHHHHH
Confidence 39999999 222232 23477888888877 233334 889999999986 344556
Q ss_pred HHhc--CC--hHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 73 LVSQ--GY--IKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 73 lv~~--g~--i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+++. +. +..+.....+.+..=+.-++.+|.|..
T Consensus 95 ~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 95 FLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC 131 (192)
T ss_pred HhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence 6643 45 777777777776555666888999974
No 80
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=87.35 E-value=4 Score=33.55 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=53.2
Q ss_pred hccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCC-----CHHHHHHHHHHHhhcccCCCChHHHHHH
Q 044025 44 LQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS-----DQRIVTVCLNGNRKLGMDNRVNVYTQMI 117 (129)
Q Consensus 44 l~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~-----d~~~~~~aL~al~ni~~~~~~~~~~~~i 117 (129)
....+.++. ||.-+|+|+.-. ++.-.+.+++.|..+.++..|... +.++.-..++-+- +......+...+.+
T Consensus 41 ~~~~~~~v~~EALKCL~N~lf~-s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLF-LlTa~~~~~~~~L~ 118 (446)
T PF10165_consen 41 FESPDPDVSREALKCLCNALFL-SPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLF-LLTALRPDDRKKLI 118 (446)
T ss_pred ccCCChHHHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHH-HHhcCChhHHHHHH
Confidence 445688999 999999999987 445446778999999999999754 3444333333221 11112344555677
Q ss_pred Hhccchhhh
Q 044025 118 NECDGLDKI 126 (129)
Q Consensus 118 ~e~ggl~~l 126 (129)
.+.+|++.|
T Consensus 119 ~e~~~~~~l 127 (446)
T PF10165_consen 119 EEHHGVELL 127 (446)
T ss_pred HHhhhHHHH
Confidence 777776654
No 81
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=87.18 E-value=1.3 Score=36.34 Aligned_cols=68 Identities=22% Similarity=0.190 Sum_probs=56.1
Q ss_pred ccHHHHHHHhc-cCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 35 NIILLLVHLLQ-HAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 35 g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.++..|+++|+ +.|+.+. =||.-|+..+.. .|. -+.++ +.|+=..++.+|+++|+++...||.|+..+
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~-~P~-gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRH-YPR-GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHH-Ccc-HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46778899995 5688888 999999999976 333 34455 579999999999999999999999999876
No 82
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=87.15 E-value=1.9 Score=30.38 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=57.1
Q ss_pred hHHHHHhhccHHHHHHHhcc---------CChHHH-HHHHHHHHhccCCCHHHHHHHHh-cCChHHHHhhcCCCCHHHHH
Q 044025 27 CMYTVIVANIILLLVHLLQH---------AELEIK-EATWAISSATYGGSHEHIQFLVS-QGYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~~---------~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~i~~l~~lL~~~d~~~~~ 95 (129)
=++.+++.|.+..|+++|.. .+.+.. ++..++-.+.... .=...+++ .++++.++..|.++++++..
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~--~G~~~v~~~~~~v~~i~~~L~s~~~~~r~ 176 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK--YGLEAVLSHPDSVNLIALSLDSPNIKTRK 176 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH--HHHHHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH--HHHHHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence 46778888888888888774 244678 9999998888752 33566774 69999999999999999999
Q ss_pred HHHHHHhhc
Q 044025 96 VCLNGNRKL 104 (129)
Q Consensus 96 ~aL~al~ni 104 (129)
.+++-|.-+
T Consensus 177 ~~leiL~~l 185 (187)
T PF06371_consen 177 LALEILAAL 185 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999877643
No 83
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.09 E-value=1.5 Score=29.85 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=27.8
Q ss_pred HHHHH-hhccHHHHHHHhccCChHHH-HHHHHHHHhc
Q 044025 28 MYTVI-VANIILLLVHLLQHAELEIK-EATWAISSAT 62 (129)
Q Consensus 28 iq~vi-~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~ 62 (129)
-..++ +.|+=..+++++.++|++|| ||.-|+.-+.
T Consensus 78 gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 78 GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34445 57999999999999999999 9998886553
No 84
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=87.06 E-value=2.6 Score=38.11 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=41.1
Q ss_pred CCCCChHHHHHHH-HHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCH
Q 044025 7 NPKLPLSKLKENT-LDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSH 67 (129)
Q Consensus 7 ~~~~~~~~~r~~w-~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~ 67 (129)
+|+++.+..-.+. ++..+.+...-.-..++...+++.++++..+++ .|++|+++++.|..+
T Consensus 828 s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~ 890 (1233)
T KOG1824|consen 828 SPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP 890 (1233)
T ss_pred CCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH
Confidence 4566555444443 777776611111113444578899999999999 999999999998543
No 85
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=86.70 E-value=3 Score=34.07 Aligned_cols=57 Identities=18% Similarity=0.003 Sum_probs=38.7
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
..+.+..+|++.++.+| +|+.+++.+-.. ..++.|...+.+.|+.+...++.++..+
T Consensus 148 ~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 148 PGPALEAALTHEDALVRAAALRALGELPRR------------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhhccc------------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 34556666666666666 666666555432 2555666778889999999999998766
No 86
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=86.59 E-value=3.5 Score=31.84 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=49.4
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
..++.+...+.+.++.+| .|+|+++.+-.- -++|.+..+|...++.++..+..+++++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~~~vr~~a~~aLg~~~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDEDPRVRDAAADALGELG 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCCHHHHHHHHHHHHccC
Confidence 478899999999999999 999996544321 26789999999999999999999999874
No 87
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.46 E-value=0.57 Score=40.48 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=56.8
Q ss_pred hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+-..+|.+|+...++.-|.+.-++|| .|+..++.++.. +|.-.. .++..|+++++.+...++..++.++..|.
T Consensus 365 ~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is 438 (823)
T KOG2259|consen 365 EEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMIS 438 (823)
T ss_pred cccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999999999 999999999986 333222 25667888888877888888888887664
No 88
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=86.45 E-value=4.9 Score=28.21 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=51.0
Q ss_pred HHhhccHHHHHHHhc--cCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-CCCHH-HHHHHHHHHh
Q 044025 31 VIVANIILLLVHLLQ--HAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-CSDQR-IVTVCLNGNR 102 (129)
Q Consensus 31 vi~~g~lp~L~~ll~--~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~~d~~-~~~~aL~al~ 102 (129)
+...|+.+.+..+.. +.+..++ .++-+++..|.. +..+..+....++-|.+++. ++|.. +...++=+|-
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 346899999999999 7888999 999999999986 44556666678889999885 45555 5555555543
No 89
>PTZ00429 beta-adaptin; Provisional
Probab=86.32 E-value=2.9 Score=36.73 Aligned_cols=48 Identities=13% Similarity=-0.023 Sum_probs=38.6
Q ss_pred HHHHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccC
Q 044025 17 ENTLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYG 64 (129)
Q Consensus 17 ~~w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~ 64 (129)
++.++..+-. .-+.+.+.|.++.|.++|.+.|+.|. .|.-++..+...
T Consensus 160 Aalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 160 AAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 4468888876 22334467999999999999999999 999999999754
No 90
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.32 E-value=2.5 Score=35.90 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=40.8
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHH
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGN 101 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al 101 (129)
.++-.+.+|....|..|| .|.-.|..+|.+ +++.+..+ ...|+.||.+.|+.-+..+=++|
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL 120 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-NPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSL 120 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHH-----HHHHHHHTT---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-HHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHH
Confidence 466778899999999999 999999999998 66777654 45888899888876555555555
No 91
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.27 E-value=2.5 Score=34.17 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=60.3
Q ss_pred HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh-cCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 28 MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS-QGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
-|.++ .-++|.+++-.+..+...| ...-|++++..+ .|.++ ++-+ ..++|.+.+-|..+|+.+...+|+++..+.
T Consensus 317 kQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~-vP~~v-l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 317 KQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSHLLKN-VPKSV-LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred hHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh-CCHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 45555 4588999999999888899 999999999997 45443 2222 368999999999999999999999998874
No 92
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=86.20 E-value=1.4 Score=37.06 Aligned_cols=96 Identities=10% Similarity=-0.074 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHhhH-----------hHHHHHhhccHHHHHHHhc---cCChHHH-HHHHHHHHhccCCCH--HHHHH
Q 044025 10 LPLSKLKENTLDSNIVV-----------CMYTVIVANIILLLVHLLQ---HAELEIK-EATWAISSATYGGSH--EHIQF 72 (129)
Q Consensus 10 ~~~~~~r~~w~lsNI~~-----------qiq~vi~~g~lp~L~~ll~---~~~~~v~-eA~wal~Ni~~~~~~--~~i~~ 72 (129)
.-+..-|++|+++||++ +...+ -.-.+..+...-. -..++|+ .|..++.|+..--.+ +-...
T Consensus 446 ~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~-sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~ 524 (728)
T KOG4535|consen 446 SLNVRAKAAWSLGNITDALIVNMPTPDSFQERF-SGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFA 524 (728)
T ss_pred hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHH
Confidence 34456678899999998 12222 2334444444422 2477899 999999887643100 00011
Q ss_pred HHhcCChHHHHhhc-CCCCHHHHHHHHHHHhhccc
Q 044025 73 LVSQGYIKPLCDLL-VCSDQRIVTVCLNGNRKLGM 106 (129)
Q Consensus 73 lv~~g~i~~l~~lL-~~~d~~~~~~aL~al~ni~~ 106 (129)
.+..|.+..+.+-. .....++.=++..+++|+.+
T Consensus 525 e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 525 EIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 12223333333322 33567888899999999854
No 93
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.60 E-value=5.1 Score=30.93 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=71.4
Q ss_pred HHHHHHHhhH---hHHHH-HhhccH----HHHHHHhccCCh-HHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhc
Q 044025 17 ENTLDSNIVV---CMYTV-IVANII----LLLVHLLQHAEL-EIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86 (129)
Q Consensus 17 ~~w~lsNI~~---qiq~v-i~~g~l----p~L~~ll~~~~~-~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL 86 (129)
++.++--..+ .++.. +++.+- |.|..-.++..+ -.| -+.=+|+.+...++.+-++++...+++|.....+
T Consensus 98 naL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim 177 (293)
T KOG3036|consen 98 NALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM 177 (293)
T ss_pred HHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence 3444444444 34443 355443 444444444444 557 9999999999998888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc-ccCCCChHHHHHHHhccch
Q 044025 87 VCSDQRIVTVCLNGNRKL-GMDNRVNVYTQMINECDGL 123 (129)
Q Consensus 87 ~~~d~~~~~~aL~al~ni-~~~~~~~~~~~~i~e~ggl 123 (129)
.....--..++...++.| .+..|.+..|+..+....+
T Consensus 178 e~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av 215 (293)
T KOG3036|consen 178 ESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAV 215 (293)
T ss_pred hcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHH
Confidence 876666666777777776 3344666667666554433
No 94
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=85.59 E-value=7.7 Score=31.94 Aligned_cols=94 Identities=16% Similarity=0.267 Sum_probs=67.0
Q ss_pred hhccHHHHHHHh-c-cCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHhhcccCC
Q 044025 33 VANIILLLVHLL-Q-HAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-SDQRIVTVCLNGNRKLGMDN 108 (129)
Q Consensus 33 ~~g~lp~L~~ll-~-~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-~d~~~~~~aL~al~ni~~~~ 108 (129)
.++-+..++..+ + ..++.+| +.++++==++-. +.-.+++-..+.|+.+.+++.. ...++.+.++-++.|+...+
T Consensus 196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn--~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN--PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC--HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456666777777 3 3588888 777776666654 3445556567999999999975 67899999999999984321
Q ss_pred ----CChHHHHHHHhccchhhhcC
Q 044025 109 ----RVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 109 ----~~~~~~~~i~e~ggl~~le~ 128 (129)
.....+..+..|+.++.++.
T Consensus 274 ~~~~~~k~~~~~mv~~~v~k~l~~ 297 (442)
T KOG2759|consen 274 PDRETKKDIASQMVLCKVLKTLQS 297 (442)
T ss_pred chhhHHHHHHHHHHhcCchHHHHH
Confidence 12355567888888877654
No 95
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=85.56 E-value=6.2 Score=28.45 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=49.7
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCC--CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGG--SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~--~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
-++.+.++..+.+..+| -|.-.+.-+...| +|.+ ++|.++-|..++++.+...|...+..+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~--------cvp~lIAL~ts~~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ--------CVPTLIALETSPNPSIRSRAYQLLKEL 72 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH--------HHhHhhhhhCCCChHHHHHHHHHHHHH
Confidence 45677888888999999 9998887777665 3432 789999999999999999999988877
No 96
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=85.52 E-value=3.9 Score=31.53 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=53.0
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccC-CCHHHHHHH-------HhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYG-GSHEHIQFL-------VSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~-~~~~~i~~l-------v~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
..-++.+.+.++.++..+| .|+-++.-+..- |. +....- -...+++.|.+.|.+.++++...+.+|+.++
T Consensus 63 ~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 63 KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGI-DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc-hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4567888888988899999 999999988632 22 222111 1245788888888888999999999999886
No 97
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.05 E-value=4.1 Score=36.13 Aligned_cols=93 Identities=25% Similarity=0.158 Sum_probs=61.9
Q ss_pred hhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHH-HhcCChHHHHhhcCCCCHHHHHHHHHHHhhc------
Q 044025 33 VANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFL-VSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL------ 104 (129)
Q Consensus 33 ~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~l-v~~g~i~~l~~lL~~~d~~~~~~aL~al~ni------ 104 (129)
..+.+..++..+...|+.|| .|.--++++...-.++--+.+ +..-.|..++++|..+-.-++.-++--|..+
T Consensus 120 ~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 120 NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch
Confidence 46889999999999999999 999999999876443322333 3567889999998754444443344433322
Q ss_pred -cc-CCC---ChHHHHHHHhccchhh
Q 044025 105 -GM-DNR---VNVYTQMINECDGLDK 125 (129)
Q Consensus 105 -~~-~~~---~~~~~~~i~e~ggl~~ 125 (129)
+| .-+ -+.....+++-||+|-
T Consensus 200 IQKlVAFENaFerLfsIIeeEGg~dG 225 (970)
T KOG0946|consen 200 IQKLVAFENAFERLFSIIEEEGGLDG 225 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 11 001 2444567888888764
No 98
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.73 E-value=3.8 Score=36.07 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=64.1
Q ss_pred ChHHHHHHH--HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHH
Q 044025 11 PLSKLKENT--LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLC 83 (129)
Q Consensus 11 ~~~~~r~~w--~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~ 83 (129)
|.+..|++= +..-|-. ....-+..+++|.++.++.++..-+| -++|+++.++++-....+....-.+.++.+.
T Consensus 376 pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~ 455 (859)
T KOG1241|consen 376 PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALL 455 (859)
T ss_pred cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHH
Confidence 445555543 4444444 11223447899999999998888999 9999999999873212222222345667777
Q ss_pred hhcCCCCHHHHHHHHHHHhhcc
Q 044025 84 DLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 84 ~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.-|. ..|++...+.|++.+++
T Consensus 456 ~gL~-DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 456 EGLN-DEPRVASNVCWAFISLA 476 (859)
T ss_pred HHhh-hCchHHHHHHHHHHHHH
Confidence 7664 57999999999998763
No 99
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.22 E-value=6 Score=32.93 Aligned_cols=93 Identities=19% Similarity=0.107 Sum_probs=69.4
Q ss_pred HHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccC--------CCHHHHHHHHhcCChHHHHhhcCC------CCHHHH
Q 044025 30 TVIVANIILLLVHLLQHAELEIK-EATWAISSATYG--------GSHEHIQFLVSQGYIKPLCDLLVC------SDQRIV 94 (129)
Q Consensus 30 ~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~--------~~~~~i~~lv~~g~i~~l~~lL~~------~d~~~~ 94 (129)
.+++.+.++.|.++|.|.+.|+- ...--+--+++. |-...+..||+.++++.|+.-+.. .+..=+
T Consensus 120 ~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv 199 (536)
T KOG2734|consen 120 ILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGV 199 (536)
T ss_pred HHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhh
Confidence 36688999999999999999999 877777777752 123568899999999999998853 223445
Q ss_pred HHHHHHHhhcccCCCChHHHHHHHhccchh
Q 044025 95 TVCLNGNRKLGMDNRVNVYTQMINECDGLD 124 (129)
Q Consensus 95 ~~aL~al~ni~~~~~~~~~~~~i~e~ggl~ 124 (129)
...|.-++|+. ...+.++..+.+-|.+.
T Consensus 200 ~~~L~vveNlv--~~r~~~~~~~~e~~ll~ 227 (536)
T KOG2734|consen 200 HNTLAVVENLV--EVRPAICTEIVEQGLLS 227 (536)
T ss_pred HHHHHHHHHHH--hccHHHHHHHHHhhHHH
Confidence 66777777873 35778887766666553
No 100
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.21 E-value=1.3 Score=38.56 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=63.1
Q ss_pred ChHHHHHHH--HHHHhhH-hHHHHHh--hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHH-HHHHHHhcCChHHHH
Q 044025 11 PLSKLKENT--LDSNIVV-CMYTVIV--ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHE-HIQFLVSQGYIKPLC 83 (129)
Q Consensus 11 ~~~~~r~~w--~lsNI~~-qiq~vi~--~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~-~i~~lv~~g~i~~l~ 83 (129)
..++.|++- ++.-|+. -.+-++. ..++|.|+.+|++..+-|| =.||.+|..+.-...+ .-+|+.. ++..|.
T Consensus 405 ~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll 482 (885)
T KOG2023|consen 405 EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLL 482 (885)
T ss_pred chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHH
Confidence 457778763 8888888 4555544 3589999999999999999 9999999876542111 1233332 344444
Q ss_pred hhcCCCCHHHHHHHHHHHhhc
Q 044025 84 DLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 84 ~lL~~~d~~~~~~aL~al~ni 104 (129)
..+-.++.++++.+..|..-+
T Consensus 483 ~~llD~NK~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 483 RRLLDSNKKVQEAACSAFATL 503 (885)
T ss_pred HHHhcccHHHHHHHHHHHHHH
Confidence 444457888888888877543
No 101
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=84.17 E-value=2 Score=34.44 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=36.0
Q ss_pred HHHHhhH------hHHHHHh-hccHHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025 20 LDSNIVV------CMYTVIV-ANIILLLVHLLQHAELEIK-EATWAISSATY 63 (129)
Q Consensus 20 ~lsNI~~------qiq~vi~-~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~ 63 (129)
|++.|.+ .+..+++ -|+=..++++++|+|+++| ||.-|+.-+.+
T Consensus 377 Ac~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 377 ACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred eHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 6667766 5666764 6999999999999999999 99998876654
No 102
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=83.13 E-value=0.44 Score=39.99 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=40.8
Q ss_pred cCChHHH-HHHHHHHHhccCCCHHHHHHH-HhcCChHHHHhhcC-CCCHHHHHHHHHHHhh
Q 044025 46 HAELEIK-EATWAISSATYGGSHEHIQFL-VSQGYIKPLCDLLV-CSDQRIVTVCLNGNRK 103 (129)
Q Consensus 46 ~~~~~v~-eA~wal~Ni~~~~~~~~i~~l-v~~g~i~~l~~lL~-~~d~~~~~~aL~al~n 103 (129)
.+.++|| .||+|++|+..+.... .+.. ...-+++.|+.|+. +.+.+++..+.-++.-
T Consensus 541 ~~~~kV~WNaCya~gNLfkn~a~~-lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 541 EAAMKVRWNACYAMGNLFKNPALP-LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred ccccccchHHHHHHHHhhcCcccc-ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 4577999 9999999999874321 0100 11237788999886 5889999999888854
No 103
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=82.34 E-value=3.7 Score=28.82 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=60.5
Q ss_pred HHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcC--CCCHHHHH
Q 044025 20 LDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLV--CSDQRIVT 95 (129)
Q Consensus 20 ~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~--~~d~~~~~ 95 (129)
+++.+-...+.-...-+-..+-..+..++.+-. .+.-+++.+-.+ -|+-...++ ..|..+.+..++. ..+..+..
T Consensus 28 ~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~ 106 (157)
T PF11701_consen 28 ILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVGSELFLSEGFLESLLPLASRKSKDRKVQK 106 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHH
Confidence 555443322222333455666667777777788 999999999987 457666676 6799999999998 78999999
Q ss_pred HHHHHHhhc
Q 044025 96 VCLNGNRKL 104 (129)
Q Consensus 96 ~aL~al~ni 104 (129)
.+++.+...
T Consensus 107 ~~lell~aA 115 (157)
T PF11701_consen 107 AALELLSAA 115 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999653
No 104
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=82.17 E-value=11 Score=30.40 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=70.1
Q ss_pred hHHHHHh-hccHHHHHHHhccC---ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-C---CCHHHHHHH
Q 044025 27 CMYTVIV-ANIILLLVHLLQHA---ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-C---SDQRIVTVC 97 (129)
Q Consensus 27 qiq~vi~-~g~lp~L~~ll~~~---~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~---~d~~~~~~a 97 (129)
.++.++| ..++..|..++++. -+.+- .|+-.++.++.. .|.....+.++|+++.|.+-+. . ...+++...
T Consensus 97 ~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n-ePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~l 175 (379)
T PF06025_consen 97 RLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHN-EPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSL 175 (379)
T ss_pred ccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhc-CCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHH
Confidence 4566888 77888888889886 34667 888899999987 6777888889999999999887 2 445666666
Q ss_pred HHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025 98 LNGNRKLGMDNRVNVYTQMINECDGLDKI 126 (129)
Q Consensus 98 L~al~ni~~~~~~~~~~~~i~e~ggl~~l 126 (129)
-.+++-+. -++...+.+.+++.++++
T Consensus 176 P~~l~Aic---LN~~Gl~~~~~~~~l~~~ 201 (379)
T PF06025_consen 176 PNVLSAIC---LNNRGLEKVKSSNPLDKL 201 (379)
T ss_pred HHHHhHHh---cCHHHHHHHHhcChHHHH
Confidence 66666553 244555666666666654
No 105
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=81.64 E-value=7.1 Score=31.62 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=57.9
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCC---CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGG---SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~---~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.++.|-|-.-|.++|..++ =||-.+.-+.-+. ....+..+|++|++|.+++....+|.++...+.++|++++
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4566777777778899999 8888887775432 2456777889999999999998899999999999998874
No 106
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=81.40 E-value=11 Score=27.43 Aligned_cols=82 Identities=16% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHH-HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCC-HHHHHHHHhcCChHHHHhhcCC
Q 044025 16 KENT-LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGS-HEHIQFLVSQGYIKPLCDLLVC 88 (129)
Q Consensus 16 r~~w-~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~-~~~i~~lv~~g~i~~l~~lL~~ 88 (129)
+.+. +++.++. ..+.. -..++|.|+..+.++...++ .|.-++..++...+ ...+ ..+.+...+.+
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------~~~~l~~~~~~ 142 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPY-ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------LLEILSQGLKS 142 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------HHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------HHHHHHHHHhC
Confidence 3444 7777776 33222 25688999999999988999 99999999988643 1222 14555566778
Q ss_pred CCHHHHHHHHHHHhhcc
Q 044025 89 SDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 89 ~d~~~~~~aL~al~ni~ 105 (129)
.++.+...++..+..+.
T Consensus 143 Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 143 KNPQVREECAEWLAIIL 159 (228)
T ss_dssp S-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 88999888888887663
No 107
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.93 E-value=6.6 Score=34.66 Aligned_cols=71 Identities=10% Similarity=0.126 Sum_probs=57.7
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhccc
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGM 106 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~ 106 (129)
-++|.+=+-++++|.+-| -|+-|++.+-.|.++++...++. +++|.+..++..+.--+...+.|+++++.+
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~-qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVI-QALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHh-hhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 456666667788999999 99999999999998888887774 688999999985555566789999998854
No 108
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=80.76 E-value=5.4 Score=34.13 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=59.7
Q ss_pred HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCC-CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 31 VIVANIILLLVHLLQHAELEIK-EATWAISSATYGG-SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 31 vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~-~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.++.|++..++.++.+.|...| ...|++.++.-+- +.++.+.+.+.| ...++++-+.++-.++.++++.++|..
T Consensus 469 fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig-~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 469 FLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIG-VEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred HHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcC-HHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 5688999999999999999999 9999999988763 234565555544 467778777788899999999999873
No 109
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=80.67 E-value=3.6 Score=33.80 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=56.8
Q ss_pred ccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 35 NIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 35 g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.++..|+.+|+.. |+.+- =||.-|+..+.. .|+ .+.++ +-|+=..+++||+++||.+.-.||.|+..+
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~-yP~-gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRH-YPE-GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHh-Cch-HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 5788999999976 57777 999999998876 555 34455 679999999999999999999999998765
No 110
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=80.46 E-value=3.3 Score=20.46 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=11.2
Q ss_pred HHH-HHHHHHHHhc
Q 044025 50 EIK-EATWAISSAT 62 (129)
Q Consensus 50 ~v~-eA~wal~Ni~ 62 (129)
.+| +|+|+|+++-
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 579 9999999983
No 111
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=80.33 E-value=6.9 Score=31.98 Aligned_cols=67 Identities=12% Similarity=-0.011 Sum_probs=43.5
Q ss_pred HHHHHHHhccCChHHH-HHHHHHHHhcc------------CCCHHHHH-HHH------hcCChHHHHhhcCCCCHHHHHH
Q 044025 37 ILLLVHLLQHAELEIK-EATWAISSATY------------GGSHEHIQ-FLV------SQGYIKPLCDLLVCSDQRIVTV 96 (129)
Q Consensus 37 lp~L~~ll~~~~~~v~-eA~wal~Ni~~------------~~~~~~i~-~lv------~~g~i~~l~~lL~~~d~~~~~~ 96 (129)
+..|++.|.+.+..++ +++-+|+-+-. +.++. .+ ..+ .....+++..+|.+.|+.+...
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~-vR~aal~al~~r~~~~~~~L~~~L~d~d~~Vra~ 166 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPP-GRAIGLAALGAHRHDPGPALEAALTHEDALVRAA 166 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChH-HHHHHHHHHHhhccChHHHHHHHhcCCCHHHHHH
Confidence 6777777777777777 77777754322 11111 11 111 1234678888888889999999
Q ss_pred HHHHHhhc
Q 044025 97 CLNGNRKL 104 (129)
Q Consensus 97 aL~al~ni 104 (129)
++.+++.+
T Consensus 167 A~raLG~l 174 (410)
T TIGR02270 167 ALRALGEL 174 (410)
T ss_pred HHHHHHhh
Confidence 99999876
No 112
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=80.20 E-value=2.5 Score=28.22 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=34.1
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025 53 EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 53 eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~ 95 (129)
++.-.++.+++. |+....+++.|+++.|+.||.+.+.++..
T Consensus 65 ~~Ik~l~~La~~--P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATA--PELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCC--hhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 677778877764 58888999999999999999998877643
No 113
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.64 E-value=6.1 Score=35.65 Aligned_cols=87 Identities=17% Similarity=0.070 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhH-h-HHHHHhhccHHHHHHHhc-cCChHHH-HHHHHHHHhccCCCHHHHHHHHhc---CChHHHHhh
Q 044025 13 SKLKENTLDSNIVV-C-MYTVIVANIILLLVHLLQ-HAELEIK-EATWAISSATYGGSHEHIQFLVSQ---GYIKPLCDL 85 (129)
Q Consensus 13 ~~~r~~w~lsNI~~-q-iq~vi~~g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~---g~i~~l~~l 85 (129)
-.-|+||.+|-++. . -...+-+.++....+.|. +.+--|| ||+.|+.-+... . ++.+.=++. +..+.|..+
T Consensus 478 Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~-~-~~~~e~~~~hvp~~mq~lL~L 555 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISN-Q-EQADEKVSAHVPPIMQELLKL 555 (1010)
T ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhc-c-hhhhhhHhhhhhHHHHHHHHH
Confidence 34467899999996 1 111222556777777777 7788999 999999998875 2 333221222 445555566
Q ss_pred cCCCCHHHHHHHHHHH
Q 044025 86 LVCSDQRIVTVCLNGN 101 (129)
Q Consensus 86 L~~~d~~~~~~aL~al 101 (129)
.+.-+.+.+..+++.+
T Consensus 556 ~ne~End~Lt~vme~i 571 (1010)
T KOG1991|consen 556 SNEVENDDLTNVMEKI 571 (1010)
T ss_pred HHhcchhHHHHHHHHH
Confidence 6655556666666666
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.05 E-value=22 Score=25.77 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=51.7
Q ss_pred HHHHhhHhHHHHHhhcc-HHHHHHHhccCChHHH-HHHHHHHHhccCCC--HHHHHHHH-hcCChHHHHhhcCCCCHHHH
Q 044025 20 LDSNIVVCMYTVIVANI-ILLLVHLLQHAELEIK-EATWAISSATYGGS--HEHIQFLV-SQGYIKPLCDLLVCSDQRIV 94 (129)
Q Consensus 20 ~lsNI~~qiq~vi~~g~-lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~--~~~i~~lv-~~g~i~~l~~lL~~~d~~~~ 94 (129)
++-.|+.... ....+ ++.+...+.+.++.+| +++-.+..+..... ...+..-. =..+++.+..++...+++++
T Consensus 117 ~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR 194 (228)
T PF12348_consen 117 ALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVR 194 (228)
T ss_dssp HHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHH
T ss_pred HHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHH
Confidence 6666654111 11234 7778888899999999 88888888875532 12221110 13477889999999999999
Q ss_pred HHHHHHHhhc
Q 044025 95 TVCLNGNRKL 104 (129)
Q Consensus 95 ~~aL~al~ni 104 (129)
..+-.++..+
T Consensus 195 ~~Ar~~~~~l 204 (228)
T PF12348_consen 195 EAARECLWAL 204 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888765
No 115
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=78.45 E-value=8.8 Score=33.20 Aligned_cols=80 Identities=18% Similarity=0.304 Sum_probs=56.4
Q ss_pred cHHHHHHHhccCChHHH--HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhccc--CCCCh
Q 044025 36 IILLLVHLLQHAELEIK--EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGM--DNRVN 111 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~--eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~--~~~~~ 111 (129)
++..++++|.+.++-+- +...+++++.+.-. ++...-+ ...+|-|..-|+..|..+...+.--++.+++ ..+-+
T Consensus 598 lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~-e~Fe~y~-~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~ 675 (858)
T COG5215 598 LMELFIRILESTKPTTAFGDVYTAISALSTSLE-ERFEQYA-SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN 675 (858)
T ss_pred HHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH-HHHHHHH-hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 77888999999876665 99999999998522 3333222 3588999998988888887777777776643 23445
Q ss_pred HHHHHH
Q 044025 112 VYTQMI 117 (129)
Q Consensus 112 ~~~~~i 117 (129)
.|++.+
T Consensus 676 ~y~d~~ 681 (858)
T COG5215 676 IYADVL 681 (858)
T ss_pred HHHHHH
Confidence 555543
No 116
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=75.85 E-value=13 Score=27.12 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=52.6
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.-.+|.+++-|...+.--+ =|.-.+.-+...+..+.+.-++ ..+++++..-|++.|++++..+|++|..+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4688999999998877777 6666666665542334454444 35888999999999999999999999665
No 117
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=75.15 E-value=23 Score=28.18 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=57.4
Q ss_pred HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCC--CH--HHHHHHHhc--CChHHHHhhcCCCCHHHHHHHHHH
Q 044025 28 MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGG--SH--EHIQFLVSQ--GYIKPLCDLLVCSDQRIVTVCLNG 100 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~--~~--~~i~~lv~~--g~i~~l~~lL~~~d~~~~~~aL~a 100 (129)
.+++...++++.|+..|..-+++.| +++-..+|+.... +. -..+|+.++ .++..|+.-.. ++++.-.+=.-
T Consensus 69 a~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~m 146 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHH
Confidence 3556788999999999999999999 9999999997542 21 236788754 56666666544 44444444444
Q ss_pred HhhcccCCCChHHHHHHHhccch
Q 044025 101 NRKLGMDNRVNVYTQMINECDGL 123 (129)
Q Consensus 101 l~ni~~~~~~~~~~~~i~e~ggl 123 (129)
++...+ -+..+..+.+...+
T Consensus 147 lRec~k---~e~l~~~iL~~~~f 166 (335)
T PF08569_consen 147 LRECIK---HESLAKIILYSECF 166 (335)
T ss_dssp HHHHTT---SHHHHHHHHTSGGG
T ss_pred HHHHHh---hHHHHHHHhCcHHH
Confidence 444332 45555555555443
No 118
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.95 E-value=7.8 Score=33.86 Aligned_cols=68 Identities=7% Similarity=-0.001 Sum_probs=48.9
Q ss_pred cHHHHHHHhccCChHHH-HH---HHHHHHhccCCCHHH-H-HHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 36 IILLLVHLLQHAELEIK-EA---TWAISSATYGGSHEH-I-QFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA---~wal~Ni~~~~~~~~-i-~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+..+.++.+++.+.+|| +| .|..+|..-+..+.+ - ..+. -.++..+|+.++...-.++..|.++++.+
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~ 308 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEF 308 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchH
Confidence 56888999999999999 77 788889884322111 1 1122 24788889988877777777888888765
No 119
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=74.58 E-value=24 Score=25.81 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhH--hHHHHH-h--hcc--HHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh---cCChHH
Q 044025 13 SKLKENTLDSNIVV--CMYTVI-V--ANI--ILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS---QGYIKP 81 (129)
Q Consensus 13 ~~~r~~w~lsNI~~--qiq~vi-~--~g~--lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~---~g~i~~ 81 (129)
.+..-+-.++|++. +.+..+ + .+. +..|...+++.+..-| -++.+|-|+|-. +..| .+|++ .+++|.
T Consensus 74 ~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd-~~~H-~~LL~~~~~~iLp~ 151 (192)
T PF04063_consen 74 NYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD-TDSH-EWLLSDDEVDILPY 151 (192)
T ss_pred chhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc-HhHH-HHhcCchhhhhHHH
Confidence 44445669999998 555554 3 244 7888888888855556 999999999987 3344 56764 467777
Q ss_pred HHhhcCC
Q 044025 82 LCDLLVC 88 (129)
Q Consensus 82 l~~lL~~ 88 (129)
++--|..
T Consensus 152 LLlPLaG 158 (192)
T PF04063_consen 152 LLLPLAG 158 (192)
T ss_pred HHhhccC
Confidence 7766643
No 120
>PF05536 Neurochondrin: Neurochondrin
Probab=74.06 E-value=21 Score=30.22 Aligned_cols=102 Identities=16% Similarity=0.061 Sum_probs=67.4
Q ss_pred HHHHhhH------h-HHHHHhhccHHHHHHHhccC------C-hHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh
Q 044025 20 LDSNIVV------C-MYTVIVANIILLLVHLLQHA------E-LEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD 84 (129)
Q Consensus 20 ~lsNI~~------q-iq~vi~~g~lp~L~~ll~~~------~-~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~ 84 (129)
.+.+++. + -+.+.++=-.+.+-++|+++ + ...+ =|.-.++-.++..+-..-..++ +-||.|++
T Consensus 28 lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~--~~IP~Lle 105 (543)
T PF05536_consen 28 LVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMV--SRIPLLLE 105 (543)
T ss_pred HHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHH--HHHHHHHH
Confidence 5555555 2 23577776678888999873 2 2334 5666666666532110012233 47999999
Q ss_pred hcCCCCH-HHHHHHHHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025 85 LLVCSDQ-RIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKI 126 (129)
Q Consensus 85 lL~~~d~-~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~l 126 (129)
.+...+. .++.-++++|..+. ..++-.+.+.+.|+++.+
T Consensus 106 ~l~~~s~~~~v~dalqcL~~Ia---s~~~G~~aLl~~g~v~~L 145 (543)
T PF05536_consen 106 ILSSSSDLETVDDALQCLLAIA---SSPEGAKALLESGAVPAL 145 (543)
T ss_pred HHHcCCchhHHHHHHHHHHHHH---cCcHhHHHHHhcCCHHHH
Confidence 9976555 89999999999986 366667788888888765
No 121
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.04 E-value=9.5 Score=30.36 Aligned_cols=63 Identities=25% Similarity=0.245 Sum_probs=48.6
Q ss_pred HHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH--hcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 37 ILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV--SQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 37 lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv--~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+-.++.++.+..+.+| .|.--+.+++.++ .+.+. +.-.++.+..|+...++ .+++..++.|.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~----~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnls 70 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRG----LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLS 70 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccc----hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHH
Confidence 3467889999999999 9999999998763 22333 34578888888887777 778888888875
No 122
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=72.51 E-value=19 Score=28.04 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=31.7
Q ss_pred HHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC--CCCHHHHHHHHHHHhhcc
Q 044025 41 VHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV--CSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 41 ~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~--~~d~~~~~~aL~al~ni~ 105 (129)
++-+..+..-.| |++++++.+-+- -.||.|...|. ...+.++.-+++||+.|+
T Consensus 193 ~~~l~~~SalfrhEvAfVfGQl~s~------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 193 IDGLADDSALFRHEVAFVFGQLQSP------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred HHhcccchHHHHHHHHHHHhhccch------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 344444455556 777766555432 24555555453 366778888888888774
No 123
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.23 E-value=38 Score=27.10 Aligned_cols=94 Identities=15% Similarity=0.090 Sum_probs=61.4
Q ss_pred CCCChHHHHHHH-HHHHhhH-hHHHHH--hhccHHHHHHHhccCChHHHHHHHHHHHhccCCCHHHHHHHHhcCChHHHH
Q 044025 8 PKLPLSKLKENT-LDSNIVV-CMYTVI--VANIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLC 83 (129)
Q Consensus 8 ~~~~~~~~r~~w-~lsNI~~-qiq~vi--~~g~lp~L~~ll~~~~~~v~eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~ 83 (129)
++.++...+.+. -++++++ +.|... +.-.++.+.+++...++ .+.|+.|+.|++... .-.+.+++. .++.++
T Consensus 13 ~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~--~l~~~ll~~-~~k~l~ 88 (353)
T KOG2973|consen 13 HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKE--ELRKKLLQD-LLKVLM 88 (353)
T ss_pred ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhH--HHHHHHHHH-HHHHHH
Confidence 334444444554 7778877 555554 35688889999998877 449999999999862 334455555 777888
Q ss_pred hhcCCCCHHHHHHHHHHHhhcc
Q 044025 84 DLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 84 ~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+.+.....-+-....-.+.|+.
T Consensus 89 ~~~~~p~~~lad~~cmlL~NLs 110 (353)
T KOG2973|consen 89 DMLTDPQSPLADLICMLLSNLS 110 (353)
T ss_pred HHhcCcccchHHHHHHHHHHhc
Confidence 8776544444444555556654
No 124
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.22 E-value=19 Score=25.00 Aligned_cols=86 Identities=9% Similarity=0.067 Sum_probs=61.5
Q ss_pred HH-HHHHhhHhHH--HHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHH-HHHhcCChHHHHhhcCC-CCH
Q 044025 18 NT-LDSNIVVCMY--TVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQ-FLVSQGYIKPLCDLLVC-SDQ 91 (129)
Q Consensus 18 ~w-~lsNI~~qiq--~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~-~lv~~g~i~~l~~lL~~-~d~ 91 (129)
=| .+-.||..|. ..--..++..+..-|.++++.++ -|.-.+--++...- ..++ .+.+...+..|..++.. .++
T Consensus 17 dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evask~Fl~eL~kl~~~~~~~ 95 (144)
T cd03568 17 NWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCG-KRFHQEVASRDFTQELKKLINDRVHP 95 (144)
T ss_pred CHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHhhHHHHHHHHHHhcccCCH
Confidence 36 6667776221 12224677778888899999999 99888888876533 3333 45577888999998876 788
Q ss_pred HHHHHHHHHHhhc
Q 044025 92 RIVTVCLNGNRKL 104 (129)
Q Consensus 92 ~~~~~aL~al~ni 104 (129)
.+..-++.-+..-
T Consensus 96 ~Vk~kil~li~~W 108 (144)
T cd03568 96 TVKEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888654
No 125
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=71.59 E-value=13 Score=26.32 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=40.6
Q ss_pred ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 48 ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 48 ~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
++.+| .+.-+++-++.- -+..++ ..+|.+...|..+++.++..++..+.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r-~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~L 52 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR-YPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHL 52 (178)
T ss_pred CHHHHHHHHHHHHHHHHh-CcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 46789 999999888765 223333 3678999999999999999999999875
No 126
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=71.52 E-value=12 Score=26.90 Aligned_cols=63 Identities=8% Similarity=0.101 Sum_probs=38.9
Q ss_pred CChHHHHHHH-HHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc
Q 044025 10 LPLSKLKENT-LDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ 76 (129)
Q Consensus 10 ~~~~~~r~~w-~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~ 76 (129)
.+....|.+| ++...... ... ..++..+...+.+.++.+| -..|+|..+... +++.+...++.
T Consensus 132 ~~~w~rR~~~v~~~~~~~~-~~~--~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~~~l~~ 196 (213)
T PF08713_consen 132 DNEWVRRAAIVMLLRYIRK-EDF--DELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVLEFLQK 196 (213)
T ss_dssp SSHHHHHHHHHCTTTHGGG-CHH--HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHh-cCH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence 3455566666 33332221 111 2345556666788899999 999999999998 67777666654
No 127
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=71.06 E-value=22 Score=28.60 Aligned_cols=69 Identities=12% Similarity=-0.020 Sum_probs=47.8
Q ss_pred hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHH
Q 044025 27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGN 101 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al 101 (129)
++..++...++|-|. -=.+..+-+| .|+|.+......-+++++. +++|.+...|.+++..+-..|..++
T Consensus 301 ~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~-----~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL-----QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH-----HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 355666777788776 2224466789 9999999888775555443 3789999999998888888887664
No 128
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=71.04 E-value=25 Score=25.12 Aligned_cols=76 Identities=18% Similarity=0.148 Sum_probs=52.7
Q ss_pred HHHHHhhccHHHHHHHhccCCh------HHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC--CCHHHHHHHH
Q 044025 28 MYTVIVANIILLLVHLLQHAEL------EIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC--SDQRIVTVCL 98 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~~~~~------~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~--~d~~~~~~aL 98 (129)
.+++|..|.++.|+.++.++.. ++- -+.-|+..+-..|.... ..++...|...+...+. .|+.+.+.+|
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW--d~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW--DTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch--hhccHHHHHHHHHHHccccccchHHHHHH
Confidence 4678889999999999998863 444 56666666666553222 23334456666666654 4789999999
Q ss_pred HHHhhcc
Q 044025 99 NGNRKLG 105 (129)
Q Consensus 99 ~al~ni~ 105 (129)
.-++++.
T Consensus 82 aILEs~V 88 (160)
T PF11841_consen 82 AILESIV 88 (160)
T ss_pred HHHHHHH
Confidence 9998873
No 129
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=70.70 E-value=47 Score=25.66 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=52.0
Q ss_pred hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccC--------CCHHHHHHHHhcCChHHHHh-hcCCCCHHHHHH
Q 044025 27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYG--------GSHEHIQFLVSQGYIKPLCD-LLVCSDQRIVTV 96 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~--------~~~~~i~~lv~~g~i~~l~~-lL~~~d~~~~~~ 96 (129)
-|..+++.+++|...+.++.|..-.| -|.+.+..+..+ .++++...+.. ++..++. +.....+.+.+.
T Consensus 131 vi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKh 208 (262)
T PF04078_consen 131 VISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKH 208 (262)
T ss_dssp HHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHH
Confidence 35556789999999999999999999 999999988754 13344333322 4444443 334577888888
Q ss_pred HHHHHhhcc
Q 044025 97 CLNGNRKLG 105 (129)
Q Consensus 97 aL~al~ni~ 105 (129)
++++-.++.
T Consensus 209 IIrCYlRLs 217 (262)
T PF04078_consen 209 IIRCYLRLS 217 (262)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 888887663
No 130
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=70.56 E-value=13 Score=32.94 Aligned_cols=62 Identities=21% Similarity=0.118 Sum_probs=45.3
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+++.+.+=++++++.+| -|...++-+=.+ +-+.+ +++++.+++++..+.+++.|..|+.++.
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~~---el~~~-----~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRVK---ELLGN-----IIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcChH---HHHHH-----HHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 44555566667777777 777777655443 33433 6788999999999999999999998874
No 131
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=68.53 E-value=53 Score=25.89 Aligned_cols=74 Identities=14% Similarity=0.241 Sum_probs=58.1
Q ss_pred hhccHHHHHHHhccC--ChHHH-HHHHHHHHhccCCCH-HHHHHHHhcCChHHHHhhcCCC---CHHHHHHHHHHHhhcc
Q 044025 33 VANIILLLVHLLQHA--ELEIK-EATWAISSATYGGSH-EHIQFLVSQGYIKPLCDLLVCS---DQRIVTVCLNGNRKLG 105 (129)
Q Consensus 33 ~~g~lp~L~~ll~~~--~~~v~-eA~wal~Ni~~~~~~-~~i~~lv~~g~i~~l~~lL~~~---d~~~~~~aL~al~ni~ 105 (129)
+.|++..+++.+... +...| --+.|+-...-|+++ ..-.++.+.|.++.+++-+-++ +..+.+..-+-+|.+-
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 358899999988764 66778 999999999999887 3445888999999999977543 3457888888888774
Q ss_pred c
Q 044025 106 M 106 (129)
Q Consensus 106 ~ 106 (129)
|
T Consensus 173 K 173 (303)
T PF12463_consen 173 K 173 (303)
T ss_pred C
Confidence 4
No 132
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=68.14 E-value=7.8 Score=31.18 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHH
Q 044025 10 LPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAI 58 (129)
Q Consensus 10 ~~~~~~r~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal 58 (129)
.|.-..+++|.++-.-.|+..-.-.+++|.++..|.++++-|+ .|+.||
T Consensus 321 ~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 321 HPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 3555556667766554432222226799999999999999999 999886
No 133
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=67.51 E-value=30 Score=27.84 Aligned_cols=107 Identities=13% Similarity=0.258 Sum_probs=68.3
Q ss_pred HHHHHH-H-HHHHhhH---hHHHHHhhccHHHHHHHhccC-Ch-HHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh
Q 044025 13 SKLKEN-T-LDSNIVV---CMYTVIVANIILLLVHLLQHA-EL-EIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD 84 (129)
Q Consensus 13 ~~~r~~-w-~lsNI~~---qiq~vi~~g~lp~L~~ll~~~-~~-~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~ 84 (129)
...|++ . ++..... .++.+.+.++--.++.-|..+ .. .-| +|.--+..+..-.. -...+..|+++.++.
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~---~~~~~~~~vvralva 115 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK---GPKEIPRGVVRALVA 115 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC---CcccCCHHHHHHHHH
Confidence 444443 3 4444433 566666777777777777764 22 335 66665555543310 011246688999999
Q ss_pred hcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 85 LLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 85 lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
+..+.+..+...+++++..+.- . -.+++.+|||+..+.
T Consensus 116 iae~~~D~lr~~cletL~El~l---~--~P~lv~~~gG~~~L~ 153 (371)
T PF14664_consen 116 IAEHEDDRLRRICLETLCELAL---L--NPELVAECGGIRVLL 153 (371)
T ss_pred HHhCCchHHHHHHHHHHHHHHh---h--CHHHHHHcCCHHHHH
Confidence 9999999999999999998741 1 135677888876653
No 134
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.85 E-value=2.5 Score=36.07 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=42.4
Q ss_pred hhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHH
Q 044025 33 VANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRI 93 (129)
Q Consensus 33 ~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~ 93 (129)
-++++|+.+..+++.|.++| .||-.+.|++....-+-+.| -..+...+|.+...+|..+
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iFdvL~klsaDsd~~V 141 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIFDVLCKLSADSDQNV 141 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc--hHHHHHHHHHHhcCCcccc
Confidence 47899999999999999999 99999999987643222222 2345667777665555443
No 135
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=66.36 E-value=17 Score=32.57 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=67.4
Q ss_pred CCCChHHHHHHHHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHH---HHHHHhcCChHHH
Q 044025 8 PKLPLSKLKENTLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEH---IQFLVSQGYIKPL 82 (129)
Q Consensus 8 ~~~~~~~~r~~w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~---i~~lv~~g~i~~l 82 (129)
|+.-.+.+.+..++-|.-. ....---.+++|+|.-+|++...+++ .+.=-++-++..|. +- ..++ .+.=.|
T Consensus 855 pEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp-E~v~aREWM---RIcfeL 930 (1172)
T KOG0213|consen 855 PEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP-EYVSAREWM---RICFEL 930 (1172)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc-ccCCHHHHH---HHHHHH
Confidence 4444455555566666432 00000126899999999999999999 88888888887754 21 1111 133356
Q ss_pred HhhcCCCCHHHHHHHHHHHhhcccCCCChHHHH
Q 044025 83 CDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQ 115 (129)
Q Consensus 83 ~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~ 115 (129)
+++|.+-+..+.+.+..+++-|++.-|..++..
T Consensus 931 lelLkahkK~iRRaa~nTfG~IakaIGPqdVLa 963 (1172)
T KOG0213|consen 931 LELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLA 963 (1172)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHH
Confidence 678887888999999999987766444444443
No 136
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=42 Score=30.95 Aligned_cols=98 Identities=11% Similarity=0.016 Sum_probs=57.6
Q ss_pred cccccCCCCChHHHHH-HHHHHHhhH----hHHHHHhhccHHHHHHHhccCCh--------HHH-HHHHHHHHhccCCCH
Q 044025 2 VIQQKNPKLPLSKLKE-NTLDSNIVV----CMYTVIVANIILLLVHLLQHAEL--------EIK-EATWAISSATYGGSH 67 (129)
Q Consensus 2 ~i~~~~~~~~~~~~r~-~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~--------~v~-eA~wal~Ni~~~~~~ 67 (129)
||+..+|-++...+.. +.++..++. -...+ ..++|.+...|...+. .|| .|||++-..+.+-++
T Consensus 384 vid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~ 461 (1133)
T KOG1943|consen 384 VIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSP 461 (1133)
T ss_pred HHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCCh
Confidence 5667788885544444 459999887 33333 4578888887776544 588 777777776666555
Q ss_pred HHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHH
Q 044025 68 EHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGN 101 (129)
Q Consensus 68 ~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al 101 (129)
+.++-+++.=.--.++.-+-..+-..++.|--|+
T Consensus 462 ~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 462 SDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred hhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 5555433321111222233335555666666666
No 137
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=65.95 E-value=46 Score=25.59 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=53.8
Q ss_pred CCCChHHHHHHH-HHHHhhH------------hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHH
Q 044025 8 PKLPLSKLKENT-LDSNIVV------------CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQF 72 (129)
Q Consensus 8 ~~~~~~~~r~~w-~lsNI~~------------qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~ 72 (129)
|..+.+-.|=+. ++.-++. ....+ ..++..|++++... +.-.| =|.-.++|++.+++ .-.+.
T Consensus 134 ~~~~lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRl--E~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~-~~~r~ 210 (257)
T PF12031_consen 134 PHSPLSPQRLALEALCKLSVIENNVDLILATPPFSRL--ERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDE-AAARA 210 (257)
T ss_pred CCCCCCHHHHHHHHHHHhheeccCcceeeeCCCHHHH--HHHHHHHHHHhccccchhHHHHHHHHHHHHhcccH-HHHHH
Confidence 445667777665 7777765 22222 34566778887765 66678 78888899998854 32223
Q ss_pred H-HhcCChHHHHhhcCCCCH
Q 044025 73 L-VSQGYIKPLCDLLVCSDQ 91 (129)
Q Consensus 73 l-v~~g~i~~l~~lL~~~d~ 91 (129)
+ .+.++|..|+.++...+.
T Consensus 211 iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 211 IAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred HHHhhchHHHHHHHHHHHHH
Confidence 3 367999999999875443
No 138
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=65.30 E-value=12 Score=30.21 Aligned_cols=69 Identities=19% Similarity=0.117 Sum_probs=56.2
Q ss_pred ccHHHHHHHhccCChHHH--HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 35 NIILLLVHLLQHAELEIK--EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~--eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.++..|.+++++.++.+- =||--+...+.. .|+-..-+.+-|+=..+++|++++|+++.=-||+|+.-+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~-~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRA-SPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh-CchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 577888999998877754 788788877765 677666566789999999999999999998899988654
No 139
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=64.05 E-value=22 Score=27.30 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=63.9
Q ss_pred hHHHHH-hhc----cHHHHHHHhccCChH-HH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHH
Q 044025 27 CMYTVI-VAN----IILLLVHLLQHAELE-IK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN 99 (129)
Q Consensus 27 qiq~vi-~~g----~lp~L~~ll~~~~~~-v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~ 99 (129)
.++.++ ++. +.|.|...=++..++ .| -+.-+++.+...++++-+.++....++|.....+.....--..++..
T Consensus 132 etk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaif 211 (315)
T COG5209 132 ETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIF 211 (315)
T ss_pred chheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 455543 443 345555554445554 47 99999999999999888888889999999999887644433445555
Q ss_pred HHhhc-ccCCCChHHHHHHHhccc
Q 044025 100 GNRKL-GMDNRVNVYTQMINECDG 122 (129)
Q Consensus 100 al~ni-~~~~~~~~~~~~i~e~gg 122 (129)
.++.+ .+..|.+..|+.++..-.
T Consensus 212 I~qkil~dDvGLqYiCqT~eRFyA 235 (315)
T COG5209 212 IFQKILGDDVGLQYICQTFERFYA 235 (315)
T ss_pred HHHHHhccchhHHHHHHHHHHHHH
Confidence 55655 233356666776665543
No 140
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=63.78 E-value=43 Score=22.63 Aligned_cols=85 Identities=7% Similarity=-0.008 Sum_probs=58.5
Q ss_pred H-HHHHhhHhHHHH--HhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCC---CC
Q 044025 19 T-LDSNIVVCMYTV--IVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVC---SD 90 (129)
Q Consensus 19 w-~lsNI~~qiq~v--i~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~---~d 90 (129)
| .+..||..|+.- --..++..+-.-|.++++.++ -|.-.+--+..... ..++..+ +...+..|..++.. .+
T Consensus 18 ~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg-~~f~~~i~s~~fl~~l~~l~~~~~~~~ 96 (133)
T cd03561 18 WALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCG-KPFHLQVADKEFLLELVKIAKNSPKYD 96 (133)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC-hHHHHHHhhHHHHHHHHHHhCCCCCCC
Confidence 6 666666522221 123567788888999999999 99988888887643 3344444 44667678888754 57
Q ss_pred HHHHHHHHHHHhhc
Q 044025 91 QRIVTVCLNGNRKL 104 (129)
Q Consensus 91 ~~~~~~aL~al~ni 104 (129)
+.+..-+++.+.+-
T Consensus 97 ~~Vk~kil~ll~~W 110 (133)
T cd03561 97 PKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888888754
No 141
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.02 E-value=27 Score=30.99 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=49.5
Q ss_pred hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHh
Q 044025 27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-CSDQRIVTVCLNGNR 102 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~~d~~~~~~aL~al~ 102 (129)
+|...+-.++...+..-+.+.++.|| ||..|+|.+-.....+. +.+...+..+++ .+.+++++.+|-.|.
T Consensus 118 eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee------~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 118 EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE------CPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc------ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 67666666777888888888999999 99999999973322121 235556666665 366788887776664
No 142
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=62.19 E-value=45 Score=22.99 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=59.5
Q ss_pred HHH-HHHHhhHhHHH--HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHH-HHHhcCChHHHHhhcC-CCC
Q 044025 17 ENT-LDSNIVVCMYT--VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQ-FLVSQGYIKPLCDLLV-CSD 90 (129)
Q Consensus 17 ~~w-~lsNI~~qiq~--vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~-~lv~~g~i~~l~~lL~-~~d 90 (129)
.=| .+-.||..|.. .--..++-.+-.-|.++++.++ -|.-.+--++...- ..++ .+.+.+.+..|..++. ..+
T Consensus 20 ~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas~~fl~~l~~l~~~~~~ 98 (142)
T cd03569 20 PDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCG-THFHDEVASREFMDELKDLIKTTKN 98 (142)
T ss_pred cCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC-HHHHHHHhhHHHHHHHHHHHcccCC
Confidence 346 66666652211 1123567778888899999999 99888877776522 2333 4457789999999886 467
Q ss_pred HHHHHHHHHHHhhc
Q 044025 91 QRIVTVCLNGNRKL 104 (129)
Q Consensus 91 ~~~~~~aL~al~ni 104 (129)
+.+..-++..+.+-
T Consensus 99 ~~Vk~kil~li~~W 112 (142)
T cd03569 99 EEVRQKILELIQAW 112 (142)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888888653
No 143
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=62.14 E-value=15 Score=24.60 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=31.6
Q ss_pred CCCChHHHH------HHH-HHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH
Q 044025 8 PKLPLSKLK------ENT-LDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK 52 (129)
Q Consensus 8 ~~~~~~~~r------~~w-~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~ 52 (129)
|++|-.|.. +.. .++.++. ---.+++.|.++.|+.+|.|.+.++.
T Consensus 50 ~ddP~KFmdSE~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 50 PDDPEKFMDSEVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred CCCHHHHHHhHHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 555555543 223 6666666 33446789999999999999988875
No 144
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=61.89 E-value=48 Score=24.19 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=25.9
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccC
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYG 64 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~ 64 (129)
..+++++-..|.+.|+++. .+.-+|..+++.
T Consensus 79 PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 79 PQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3567777788899999999 999999999654
No 145
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=61.35 E-value=9.7 Score=18.51 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=10.3
Q ss_pred HH-HHHHHHHHhcc
Q 044025 51 IK-EATWAISSATY 63 (129)
Q Consensus 51 v~-eA~wal~Ni~~ 63 (129)
+| +|+|+|+++-+
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68 99999988875
No 146
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.73 E-value=35 Score=30.29 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=33.9
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+-+-++.+|++..+-+| -|.-++.-+.-. -|+-++ -++|.|.+-|..+||.++..|...|..++
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLk-YPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELA 209 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLK-YPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELA 209 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHh-hhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 33445555566555666 555555555432 222222 25566666666666666666666555543
No 147
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.72 E-value=13 Score=32.63 Aligned_cols=60 Identities=13% Similarity=0.002 Sum_probs=46.3
Q ss_pred ccCCCCChHHHHHHHHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccC
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYG 64 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~ 64 (129)
+++.+.+.+....+-++.+.-. ..+.+.++|+++.|-.++.+.++.|- .|.-+++.+...
T Consensus 129 ~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 129 CLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred hccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 3445555555444456666555 78888899999999999999999999 999999988754
No 148
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.55 E-value=32 Score=31.30 Aligned_cols=77 Identities=25% Similarity=0.270 Sum_probs=58.4
Q ss_pred hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccC-C-CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhh
Q 044025 27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYG-G-SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRK 103 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~-~-~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~n 103 (129)
|++.+ ..++.+-..+|++.+-.+| +|.=+++....- + -+++.--++ +-.=|+++.-+...|+-++..|..+|++
T Consensus 797 qv~iv--~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv-hq~W~~vie~~~~k~~L~v~~a~~~i~~ 873 (1014)
T KOG4524|consen 797 QVKIV--LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV-HQTWPSVIECLLCKDPLIVQRAFSCIEQ 873 (1014)
T ss_pred HHHHH--HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH-HhhhhHHHHHHhcCchHHHHHHHHHHHH
Confidence 55555 6799999999999999999 999999865421 1 123333333 3466888888999999999999999998
Q ss_pred ccc
Q 044025 104 LGM 106 (129)
Q Consensus 104 i~~ 106 (129)
+..
T Consensus 874 m~~ 876 (1014)
T KOG4524|consen 874 MGK 876 (1014)
T ss_pred HHH
Confidence 854
No 149
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=60.40 E-value=52 Score=26.57 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=38.3
Q ss_pred HHHHHhhH--hHHHHHh--hccHHHHHHHhccCChHHH-HHHHHHHHhccCC
Q 044025 19 TLDSNIVV--CMYTVIV--ANIILLLVHLLQHAELEIK-EATWAISSATYGG 65 (129)
Q Consensus 19 w~lsNI~~--qiq~vi~--~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~ 65 (129)
.++|++.. +.+.+.. ..++|.+++.|+.+|.+++ .+.-++..+....
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 38888888 4333332 5799999999999999999 9999999999874
No 150
>PF03752 ALF: Short repeats of unknown function; InterPro: IPR005506 This set of repeats is found in a small family of secreted proteins of no known function, which may be involved in signal transduction.
Probab=60.01 E-value=27 Score=19.08 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=26.5
Q ss_pred HHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025 40 LVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG 77 (129)
Q Consensus 40 L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g 77 (129)
+..++.++-+.+| .|--|| +.|+++.++.+++.|
T Consensus 4 v~~l~~~gG~~vr~AA~~AL----~~G~~~~l~~FL~~G 38 (43)
T PF03752_consen 4 VVQLLASGGPAVRAAAQAAL----DAGTPEALREFLETG 38 (43)
T ss_pred HHHHHHcCCHHHHHHHHHHH----HhCCHHHHHHHHHHh
Confidence 4677888889999 887777 456888888888766
No 151
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=59.43 E-value=35 Score=24.02 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=42.6
Q ss_pred CCCChHHHHHHH-HHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc
Q 044025 8 PKLPLSKLKENT-LDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ 76 (129)
Q Consensus 8 ~~~~~~~~r~~w-~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~ 76 (129)
.+......|.+| ++.....+ .---..+++.+-.++.+.++.+| -..|+|..+... .++.+...++.
T Consensus 115 ~s~~~~~rR~~~~~~~~~~~~--~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~~ 182 (197)
T cd06561 115 KSENEWVRRAAIVLLLRLIKK--ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLEK 182 (197)
T ss_pred hCCcHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence 345566777777 44433211 01113456666666777899999 999999999987 66766655543
No 152
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.60 E-value=37 Score=31.53 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=49.6
Q ss_pred HhhccHHHHHHHhccCChHHH-HHHHHHHHhccCC---CHHHHHHH------------HhcCChH---HHHhhcCCCCHH
Q 044025 32 IVANIILLLVHLLQHAELEIK-EATWAISSATYGG---SHEHIQFL------------VSQGYIK---PLCDLLVCSDQR 92 (129)
Q Consensus 32 i~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~---~~~~i~~l------------v~~g~i~---~l~~lL~~~d~~ 92 (129)
.+.++...|..+|+.+-++|| .|.+|++.+..++ .+++...+ ++.-+.. .+..++....+-
T Consensus 639 ~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgspl 718 (1387)
T KOG1517|consen 639 RRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPL 718 (1387)
T ss_pred ccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchH
Confidence 356889999999999999999 9999999998865 22332222 2222332 455555556666
Q ss_pred HHHHHHHHHhhc
Q 044025 93 IVTVCLNGNRKL 104 (129)
Q Consensus 93 ~~~~aL~al~ni 104 (129)
+...+..++.+.
T Consensus 719 vr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 719 VRTEVVVALSHF 730 (1387)
T ss_pred HHHHHHHHHHHH
Confidence 666666677654
No 153
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=56.76 E-value=63 Score=22.31 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=59.1
Q ss_pred HHH-HHHHhhHhHHH--HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHH-HHHhcCChHHHHhhcCC---
Q 044025 17 ENT-LDSNIVVCMYT--VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQ-FLVSQGYIKPLCDLLVC--- 88 (129)
Q Consensus 17 ~~w-~lsNI~~qiq~--vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~-~lv~~g~i~~l~~lL~~--- 88 (129)
+=| .+..||..|.. .--..++..+..-|.++++.++ -|.-.+-.+....- ..++ .+.+.+.+.-|+.++..
T Consensus 17 ~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evas~~Fl~el~kl~~~k~~ 95 (139)
T cd03567 17 EDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCG-ERFHSEVGKFRFLNELIKLVSPKYL 95 (139)
T ss_pred CCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHHhHHHHHHHHHHhccccC
Confidence 347 77778772211 1113567778888899999999 99988888886422 3343 34467888888888852
Q ss_pred ---CCHHHHHHHHHHHhh
Q 044025 89 ---SDQRIVTVCLNGNRK 103 (129)
Q Consensus 89 ---~d~~~~~~aL~al~n 103 (129)
.++.+..-+|.-+..
T Consensus 96 ~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 96 GSRTSEKVKTKIIELLYS 113 (139)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 567888888888864
No 154
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=56.42 E-value=34 Score=26.66 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=38.3
Q ss_pred cHHHHHHHhcc--CChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHh
Q 044025 36 IILLLVHLLQH--AELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR 102 (129)
Q Consensus 36 ~lp~L~~ll~~--~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ 102 (129)
.+|.|.+.|.. ..+-+| ||+.||+.++.. + +++.|...+...++.+..-+--++.
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---------~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---------CVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H---------HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 37888888875 477899 999999999864 3 3344556666666666655555554
No 155
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=55.10 E-value=47 Score=30.23 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=57.1
Q ss_pred HHHHhhH--hHHHHHh--hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCC---H
Q 044025 20 LDSNIVV--CMYTVIV--ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSD---Q 91 (129)
Q Consensus 20 ~lsNI~~--qiq~vi~--~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d---~ 91 (129)
+|||.-. +.|.++. ..++|.|.+.|+-+|..+| ++.-++.-..+-..+=+..++ .-++|.++.+=..+| .
T Consensus 890 ~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~--~Tlvp~lLsls~~~~n~~~ 967 (1030)
T KOG1967|consen 890 ALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL--STLVPYLLSLSSDNDNNMM 967 (1030)
T ss_pred HHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH--hHHHHHHHhcCCCCCcchh
Confidence 4555433 6666664 5899999999999999999 999998877654321111221 126788888655555 4
Q ss_pred HHHHHHHHHHhhcc
Q 044025 92 RIVTVCLNGNRKLG 105 (129)
Q Consensus 92 ~~~~~aL~al~ni~ 105 (129)
.++..||+++.-+.
T Consensus 968 ~VR~~ALqcL~aL~ 981 (1030)
T KOG1967|consen 968 VVREDALQCLNALT 981 (1030)
T ss_pred HHHHHHHHHHHHHh
Confidence 56677888887653
No 156
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.14 E-value=28 Score=31.07 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=38.6
Q ss_pred HHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHH
Q 044025 17 ENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQF 72 (129)
Q Consensus 17 ~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~ 72 (129)
+..+++||+. -+.. ..+.|.+.+++++.++-+| -|+-|...+..- .|+....
T Consensus 127 AL~alg~i~s-~Ema--rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK-~P~l~e~ 179 (866)
T KOG1062|consen 127 ALCALGNICS-PEMA--RDLAPEVERLLQHRDPYIRKKAALCAVRFIRK-VPDLVEH 179 (866)
T ss_pred HHHHhhccCC-HHHh--HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CchHHHH
Confidence 3458888875 2222 4578999999999999999 999998888765 4555544
No 157
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=53.33 E-value=73 Score=25.39 Aligned_cols=85 Identities=15% Similarity=0.090 Sum_probs=52.1
Q ss_pred cccccCCCCChHHHHHHH-HHHHhhH---hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025 2 VIQQKNPKLPLSKLKENT-LDSNIVV---CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVS 75 (129)
Q Consensus 2 ~i~~~~~~~~~~~~r~~w-~lsNI~~---qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~ 75 (129)
+.+.+.|..|.+..|..- -|...+. ..+.+-+.|....+...+... +..+- -++-++..+..... ...+.+.+
T Consensus 26 lld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~-~~~~l~~~ 104 (361)
T PF07814_consen 26 LLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDG-LNMHLLLD 104 (361)
T ss_pred HHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCC-cchhhhhc
Confidence 456777888888877664 6666666 556666889999999999654 44355 44445555544322 11222234
Q ss_pred cCChHHHHhhcC
Q 044025 76 QGYIKPLCDLLV 87 (129)
Q Consensus 76 ~g~i~~l~~lL~ 87 (129)
.+.++.+..++.
T Consensus 105 ~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 105 RDSLRLLLKLLK 116 (361)
T ss_pred hhHHHHHHHHhc
Confidence 455555566665
No 158
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=52.78 E-value=1e+02 Score=23.72 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=58.1
Q ss_pred hHHHHH-hhccHHHHHHHhc-cCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC--CCHHHHHHHHHHH
Q 044025 27 CMYTVI-VANIILLLVHLLQ-HAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC--SDQRIVTVCLNGN 101 (129)
Q Consensus 27 qiq~vi-~~g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~--~d~~~~~~aL~al 101 (129)
+.+..+ +...+..++++|+ ...+.++ .+.-++..+..+ ++...+.+-+.+.+..++.+++. .+.++.--+++.+
T Consensus 124 ~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld-~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL 202 (257)
T PF08045_consen 124 PSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD-SPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFL 202 (257)
T ss_pred hHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc-ChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHH
Confidence 455555 5788999999995 4688999 999999998887 55767777788999999999975 5556656666666
No 159
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=52.51 E-value=91 Score=26.81 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=53.1
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
-++|.++.-+.....+.+ .++..++.++..+ +.|.. +.-..++|.+.+.|..+++++...+-.++.++
T Consensus 254 ~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 254 LLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 355666666666677888 8999999888774 46654 44568999999999999999999999998765
No 160
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=52.03 E-value=26 Score=30.79 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=67.0
Q ss_pred CCCChHHHHHHHHHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHH---HHHHHhcCChHH
Q 044025 8 PKLPLSKLKENTLDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEH---IQFLVSQGYIKP 81 (129)
Q Consensus 8 ~~~~~~~~r~~w~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~---i~~lv~~g~i~~ 81 (129)
|+.-.+.+++..++-|.-. ..|-- -+|++|.+..+|++...+++ ...--++-++..+. +- -+++ .+.=.
T Consensus 660 pEvLgsil~Ai~~I~sv~~~~~mqpP-i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~p-eyi~~rEWM---RIcfe 734 (975)
T COG5181 660 PEVLGSILKAICSIYSVHRFRSMQPP-ISGILPSLTPILRNKHQKVVANTIALVGTICMNSP-EYIGVREWM---RICFE 734 (975)
T ss_pred HHHHHHHHHHHHHHhhhhcccccCCc-hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCc-ccCCHHHHH---HHHHH
Confidence 3334455555555555443 12211 27999999999999999999 88888888887643 21 1111 13335
Q ss_pred HHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHH
Q 044025 82 LCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQM 116 (129)
Q Consensus 82 l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~ 116 (129)
|+++|.+-+.++.+.|-.+++-|++.-|..+....
T Consensus 735 Lvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~ 769 (975)
T COG5181 735 LVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDI 769 (975)
T ss_pred HHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHH
Confidence 67888888899999999998876543344444443
No 161
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=49.78 E-value=32 Score=22.75 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=42.7
Q ss_pred ccHHHHHHHhccCC----hHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHH
Q 044025 35 NIILLLVHLLQHAE----LEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGN 101 (129)
Q Consensus 35 g~lp~L~~ll~~~~----~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al 101 (129)
.++..+.+.+.... .+.. .+.-++.....-. ....+.+.+.++.++++|.. +++...|+++|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~---~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWI---PIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS----HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC---CHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 55666666666543 6777 8888888888754 35577778899999999854 34466666654
No 162
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=49.71 E-value=33 Score=23.80 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=22.3
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHhh
Q 044025 77 GYIKPLCDLLVCSDQRIVTVCLNGNRK 103 (129)
Q Consensus 77 g~i~~l~~lL~~~d~~~~~~aL~al~n 103 (129)
.+-..+..+|.+.|++++..||++|-.
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344567789999999999999999953
No 163
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=49.53 E-value=59 Score=21.52 Aligned_cols=39 Identities=31% Similarity=0.245 Sum_probs=31.8
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ 76 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~ 76 (129)
.++.|+..|.+++.+|. .|.-++..++... +..+++++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~--~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK--EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch--hhHHHHHHc
Confidence 56788999999999999 9999999999874 556666653
No 164
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=48.91 E-value=59 Score=27.18 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=43.4
Q ss_pred HHhhccHHHHHHHhcc-CChHHH-HHHHHHHHhccCC------------CHHHHHHHHhcCChHHHHhhcC
Q 044025 31 VIVANIILLLVHLLQH-AELEIK-EATWAISSATYGG------------SHEHIQFLVSQGYIKPLCDLLV 87 (129)
Q Consensus 31 vi~~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~------------~~~~i~~lv~~g~i~~l~~lL~ 87 (129)
+-+.+++|.|+..|+. .+.+++ .|+-.|+.++.-+ .....++|++...+..|++.+-
T Consensus 58 L~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL 128 (475)
T PF04499_consen 58 LAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIML 128 (475)
T ss_pred HHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHh
Confidence 3468999999999984 478889 9998888775421 1256778888888888888664
No 165
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=48.73 E-value=32 Score=30.83 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=48.2
Q ss_pred HHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccC-----CCHHHHHHHHhcCChHHHHhhcC
Q 044025 28 MYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYG-----GSHEHIQFLVSQGYIKPLCDLLV 87 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~-----~~~~~i~~lv~~g~i~~l~~lL~ 87 (129)
+|-+-+..++|.+++++... +++++ .|...++-++.. |.....++|++...+..|+..+-
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml 249 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIML 249 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHc
Confidence 44445679999999999864 78999 999999999887 66567888888888888877553
No 166
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=48.62 E-value=63 Score=28.38 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=49.8
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.+++|.++.+++..|..+| --.-=+-+.+..=+ +..++..++|.+...+..+++.++...+.++.-+
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt----~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT----KQILNDQIFPHVALGFLDTNATLREQTLKSMAVL 396 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC----HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 4588888888888888888 65544444443323 2345567899999999999999999999998644
No 167
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=48.05 E-value=39 Score=27.82 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=51.8
Q ss_pred HHHHHHH-HHHHhhH-hHHHHHhhccHHHHHHHhcc------CChHHH-HHHHHHHHhccCCCHHHHHHHHhc---CChH
Q 044025 13 SKLKENT-LDSNIVV-CMYTVIVANIILLLVHLLQH------AELEIK-EATWAISSATYGGSHEHIQFLVSQ---GYIK 80 (129)
Q Consensus 13 ~~~r~~w-~lsNI~~-qiq~vi~~g~lp~L~~ll~~------~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~---g~i~ 80 (129)
..-+.+| +++|++. +.... ++-.|.++|.+ .+..+- -|.+.+.-+..+...+.... +.. -++|
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~----~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~-l~~~~~~vl~ 304 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHS----AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPS-LPFSPSSVLP 304 (464)
T ss_pred ccchhHHHHHHHHHcCccHHH----HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcce-ecccHHHHHH
Confidence 3445689 9999998 43322 34556666632 234444 78888887776632121211 222 2778
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 81 PLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 81 ~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.|...|...++.+--.++..+.++
T Consensus 305 sl~~al~~~~~~v~~eIl~~i~~l 328 (464)
T PF11864_consen 305 SLLNALKSNSPRVDYEILLLINRL 328 (464)
T ss_pred HHHHHHhCCCCeehHHHHHHHHHH
Confidence 888888877776655666666554
No 168
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=47.39 E-value=52 Score=28.89 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=54.1
Q ss_pred HhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHhhc
Q 044025 32 IVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-CSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 32 i~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~~d~~~~~~aL~al~ni 104 (129)
+...++|.|...+++.+..+| ++.-.+.+.+..-+ -..++.-++|.+..+-. +++..+...+|-+++.+
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD----~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l 456 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID----VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGL 456 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc----HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHH
Confidence 346789999999999999999 98888877775432 23467789999998743 47788888899999765
No 169
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=47.38 E-value=68 Score=28.15 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=35.5
Q ss_pred HHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhc
Q 044025 21 DSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSAT 62 (129)
Q Consensus 21 lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~ 62 (129)
++|-.+.|..++-.|++..|..-+-..++-|| ||..+++..-
T Consensus 118 ~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q 160 (885)
T COG5218 118 LSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ 160 (885)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34433388888888999999999999999999 9999999886
No 170
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=47.37 E-value=1.4e+02 Score=23.73 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=60.4
Q ss_pred HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc---CChHHHHhhcCCCCHHHHHHHHHHHhh
Q 044025 28 MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ---GYIKPLCDLLVCSDQRIVTVCLNGNRK 103 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~---g~i~~l~~lL~~~d~~~~~~aL~al~n 103 (129)
.+.++....+-.+.+....+.+++- +|.-.+.-+-+. .++-....+.. ..+..+..||.+++....+.+|+-|+.
T Consensus 157 ~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~e 235 (335)
T PF08569_consen 157 AKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGE 235 (335)
T ss_dssp HHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHH
Confidence 3456778889999999999999999 999988887665 44555555544 356788889999999999999999987
Q ss_pred c
Q 044025 104 L 104 (129)
Q Consensus 104 i 104 (129)
+
T Consensus 236 l 236 (335)
T PF08569_consen 236 L 236 (335)
T ss_dssp H
T ss_pred H
Confidence 6
No 171
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=46.68 E-value=70 Score=27.96 Aligned_cols=70 Identities=9% Similarity=0.037 Sum_probs=54.5
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.++...-+-+++++..-| -|+-|++.+-.|.+.++.-++|. .++|.+.+++..+---+.....|+++.|+
T Consensus 366 pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~i~n~m~D~~l~vk~ttAwc~g~ia 436 (858)
T COG5215 366 PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPGIENEMSDSCLWVKSTTAWCFGAIA 436 (858)
T ss_pred HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHHHHHhcccceeehhhHHHHHHHHHH
Confidence 345555555778888889 89999999999988888888874 57888888887544566777899998874
No 172
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.62 E-value=64 Score=23.96 Aligned_cols=69 Identities=16% Similarity=0.057 Sum_probs=47.0
Q ss_pred CCCCChHHHHHHH--HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025 7 NPKLPLSKLKENT--LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS 75 (129)
Q Consensus 7 ~~~~~~~~~r~~w--~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~ 75 (129)
.|.++-+..+++- ++|.|-. |.+.--|..-+-..++-.-.+-.+.+ -|..++++-..++||+|.+.+.+
T Consensus 25 ~~~~~~~~v~~~a~~~ls~lk~~~~~~k~dp~~l~~~v~~~l~p~vd~~~~a~~vLGk~~k~aspeQ~~~F~~ 97 (202)
T COG2854 25 APANPYSLVQEAADKVLSILKNNQAKIKQDPQYLRQIVDQELLPYVDFKYAAKLVLGKYYKTASPEQRQAFFK 97 (202)
T ss_pred CccchHHHHHHHHHHHHHHHhccchhhccCHHHHHHHHHHHhhhhhcHHHHHHHHhccccccCCHHHHHHHHH
Confidence 3666666666653 7777766 33333344455555555555567889 99999999999999999887653
No 173
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=45.53 E-value=81 Score=24.19 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=44.8
Q ss_pred ccHHHHH-HHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 35 NIILLLV-HLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 35 g~lp~L~-~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+++..++ ..+++.+..+| .|.-+++=.+-- +.+... ..++.|...+...++.+...+++++-.+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dl 91 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLL-DKELAK-----EHLPLFLQALQKDDEEVKITALKALFDL 91 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-ChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555554 56789999999 999999988765 222221 2355666666667888888899998654
No 174
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=45.24 E-value=28 Score=26.60 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=39.3
Q ss_pred HHHHHhccCChHHH-HHHHHHHHhccCCC-----HHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 39 LLVHLLQHAELEIK-EATWAISSATYGGS-----HEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 39 ~L~~ll~~~~~~v~-eA~wal~Ni~~~~~-----~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.|-..|.+.|..+| .|...|+++...-. .++++. ++..+++-| .|...+..++.|+..+.
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~-----L~~F~~~rl--~D~~~~~~~l~gl~~L~ 68 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQV-----LLDFFCSRL--DDHACVQPALKGLLALV 68 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHH-----HHHHHHHHh--ccHhhHHHHHHHHHHHH
Confidence 35567888999999 99999998876533 233332 223444444 57777777788886553
No 175
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=44.61 E-value=1.4e+02 Score=22.80 Aligned_cols=87 Identities=14% Similarity=0.051 Sum_probs=56.6
Q ss_pred HHHHHH-HhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh----hcC--
Q 044025 17 ENTLDS-NIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD----LLV-- 87 (129)
Q Consensus 17 ~~w~ls-NI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~----lL~-- 87 (129)
-.|++. +... .+.+.. .=++|.+..++++.++.+| ..+.++..+...-....-..+.+.|..+.+-+ +|.
T Consensus 100 l~w~v~~~~~~~~i~~~~-~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~L 178 (282)
T PF10521_consen 100 LSWIVLSQLDRPWISQHW-PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYL 178 (282)
T ss_pred HHHHHHhcCCcchHHHhh-hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcC
Confidence 358766 5544 444433 4588999999999999999 99999999997643333223455664443333 232
Q ss_pred ------CCCHHHHHHHHHHHhhc
Q 044025 88 ------CSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 88 ------~~d~~~~~~aL~al~ni 104 (129)
.+...+...+..++..+
T Consensus 179 P~~tp~~~s~~Ll~~ay~~L~~L 201 (282)
T PF10521_consen 179 PPITPEDESLELLQAAYPALLSL 201 (282)
T ss_pred CCCCCchhhHHHHHHHHHHHHHH
Confidence 23356777777777665
No 176
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=44.52 E-value=1.2e+02 Score=24.36 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=53.4
Q ss_pred hhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 33 VANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 33 ~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
-.|++..++.+..+.+...| -|.-.++-++-. +|+ -++++|.++.+.+.+.....++...++.++-.+
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~l 174 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALL-NPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYL 174 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHH
Confidence 45788889999999999999 999999999986 554 466889999999988655555666677777544
No 177
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.07 E-value=68 Score=26.99 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=34.2
Q ss_pred CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 66 SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 66 ~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
-|+..-.+++.++++.|..||.++++++...+++-+..+
T Consensus 114 ~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqEL 152 (536)
T KOG2734|consen 114 MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQEL 152 (536)
T ss_pred ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHh
Confidence 467777899999999999999999999998888888765
No 178
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=43.95 E-value=70 Score=26.97 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=30.2
Q ss_pred cHHHHHHHhccC---ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHH
Q 044025 36 IILLLVHLLQHA---ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGN 101 (129)
Q Consensus 36 ~lp~L~~ll~~~---~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al 101 (129)
.+|.+...+... +..+| .|.||+..++.. .++.++.+ ++|.+.+ ...+++++..|...|
T Consensus 522 ~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-~~~~v~~~----l~~I~~n--~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 522 SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-CPEKVREI----LLPIFMN--TTEDPEVRIAAYLIL 584 (618)
T ss_dssp GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHH----HHHHHH---TTS-HHHHHHHHHHH
T ss_pred hhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-CcHHHHHH----HHHHhcC--CCCChhHHHHHHHHH
Confidence 566666666655 66777 888887777554 33333322 2222222 235566665555555
No 179
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=43.44 E-value=62 Score=28.69 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=51.8
Q ss_pred ccHHHHHHHhccCChHHH--HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 35 NIILLLVHLLQHAELEIK--EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~--eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
..++++...+++...... |+.-++.|++.-.+.+ -+.+++...++.+-.++..+++.+++.+++.+.|+
T Consensus 541 ~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~-r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NL 611 (748)
T KOG4151|consen 541 EVVKPLDSALHNDEKGLENFEALEALTNLASISESD-RQKILKEKALGKIEELMTEENPALQRAALESIINL 611 (748)
T ss_pred hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhh-HHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHH
Confidence 456666666666655555 9999999998774433 34477777777777777778899999999999887
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.35 E-value=2.7e+02 Score=26.27 Aligned_cols=99 Identities=10% Similarity=0.004 Sum_probs=73.9
Q ss_pred ccCCCCChH-HHHHH--HHHHHhhH---hHH-HHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHH-H
Q 044025 5 QKNPKLPLS-KLKEN--TLDSNIVV---CMY-TVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFL-V 74 (129)
Q Consensus 5 ~~~~~~~~~-~~r~~--w~lsNI~~---qiq-~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~l-v 74 (129)
.+.|+.... .+|++ .+|+-|++ .-| +-++.+++....+.|.++ ++-.| =+|-+|+-+=.+- +..++. +
T Consensus 562 vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~--~~Arw~G~ 639 (1387)
T KOG1517|consen 562 VLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY--DEARWSGR 639 (1387)
T ss_pred EecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc--chhhhccc
Confidence 344544333 55654 58999998 333 456889999999999986 67788 8888999887753 333444 4
Q ss_pred hcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 75 SQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 75 ~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+.++-..|..+|..+-++++..++.||+...
T Consensus 640 r~~AhekL~~~LsD~vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 640 RDNAHEKLILLLSDPVPEVRAAAVFALGTFL 670 (1387)
T ss_pred cccHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence 6788999999998888999999999998763
No 181
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=42.16 E-value=57 Score=25.48 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=27.3
Q ss_pred hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhc
Q 044025 27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSAT 62 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~ 62 (129)
.+.... ...+|.|+.+|.++|.++| .|.-+|.=+.
T Consensus 221 ~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 221 KLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 344332 4579999999999999999 9988887554
No 182
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=41.31 E-value=74 Score=28.58 Aligned_cols=87 Identities=10% Similarity=0.129 Sum_probs=52.1
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHH
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVY 113 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~ 113 (129)
.+.+...+.++++.+.++ ++.-.+.-....-++.....-.-.+++|.++..-+..|..++..+++++.-+.+..|.+.+
T Consensus 371 ~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 371 KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 455666777788888888 6443333333221111000111135777888877778999999999999876555555655
Q ss_pred HHHHHhcc
Q 044025 114 TQMINECD 121 (129)
Q Consensus 114 ~~~i~e~g 121 (129)
-..+.+..
T Consensus 451 ~k~L~~~~ 458 (815)
T KOG1820|consen 451 KKLLKDLD 458 (815)
T ss_pred HHHHHhhc
Confidence 55555544
No 183
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=41.22 E-value=62 Score=30.58 Aligned_cols=93 Identities=4% Similarity=0.007 Sum_probs=67.3
Q ss_pred HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCC
Q 044025 31 VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNR 109 (129)
Q Consensus 31 vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~ 109 (129)
+-.-|-+|.++..+.+.+..+- .|..++-.++... -..+.+.+..++.+++..|. ..+..+..++++|.++.+ ..
T Consensus 2043 ip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~--~C~~AMA~l~~i~~~m~~mk-K~~~~~GLA~EalkR~~~-r~ 2118 (2235)
T KOG1789|consen 2043 LPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ--FCCDAMAQLPCIDGIMKSMK-KQPSLMGLAAEALKRLMK-RN 2118 (2235)
T ss_pred CCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc--HHHHHHhccccchhhHHHHH-hcchHHHHHHHHHHHHHH-Hh
Confidence 3346999999999998877777 8888888887652 34556667778888888775 466788899999998753 23
Q ss_pred ChHHHHHHHhccchhhhc
Q 044025 110 VNVYTQMINECDGLDKIE 127 (129)
Q Consensus 110 ~~~~~~~i~e~ggl~~le 127 (129)
..+......+||.++.+-
T Consensus 2119 ~~eLVAQ~LK~gLvpyLL 2136 (2235)
T KOG1789|consen 2119 TGELVAQMLKCGLVPYLL 2136 (2235)
T ss_pred HHHHHHHHhccCcHHHHH
Confidence 444444566777776653
No 184
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=40.88 E-value=1.7e+02 Score=22.85 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=41.5
Q ss_pred HHH--HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhh
Q 044025 50 EIK--EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRK 103 (129)
Q Consensus 50 ~v~--eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~n 103 (129)
++| -.-++++.+..+ ++...+.++ +.+.+..+..-|...+++++..+|+++..
T Consensus 129 siR~~fI~F~Lsfl~~~-~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSG-DPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred CHHHHHHHHHHHHHccC-CHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 888 445667777666 667777777 45788999998888889999999999963
No 185
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.17 E-value=97 Score=28.40 Aligned_cols=53 Identities=8% Similarity=0.038 Sum_probs=37.2
Q ss_pred ChHHHHHHH-HHHHhhH------hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025 11 PLSKLKENT-LDSNIVV------CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATY 63 (129)
Q Consensus 11 ~~~~~r~~w-~lsNI~~------qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~ 63 (129)
+......+. ++++++. .-...++.=+++.+.-.++++--..| .|||+++..+.
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~ 491 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSS 491 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHh
Confidence 334433454 8899888 23334444467777777888888899 99999999983
No 186
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=40.11 E-value=52 Score=22.38 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=54.2
Q ss_pred H-HHHHhhHhHHHH--HhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHH-HHhcCChHHHHhhcCC-CCHH
Q 044025 19 T-LDSNIVVCMYTV--IVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQF-LVSQGYIKPLCDLLVC-SDQR 92 (129)
Q Consensus 19 w-~lsNI~~qiq~v--i~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~-lv~~g~i~~l~~lL~~-~d~~ 92 (129)
| .+.+||..+..- --..++..+-.-|.++++.++ -|.-.+--+..... ..++. +.+...+..|..++.. ....
T Consensus 23 w~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg-~~f~~ev~~~~fl~~l~~l~~~~~~~~ 101 (140)
T PF00790_consen 23 WSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCG-PRFHREVASKEFLDELVKLIKSKKTDP 101 (140)
T ss_dssp HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH-HHHHHHHTSHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHhHHHHHHHHHHHHccCCCCc
Confidence 5 555666522211 113566777888899999999 99988888887643 33433 4466778888887753 3332
Q ss_pred ---HHHHHHHHHhh
Q 044025 93 ---IVTVCLNGNRK 103 (129)
Q Consensus 93 ---~~~~aL~al~n 103 (129)
+..-++.-+..
T Consensus 102 ~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 102 ETPVKEKILELLQE 115 (140)
T ss_dssp HSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 67777777654
No 187
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=39.70 E-value=21 Score=25.31 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=20.0
Q ss_pred HHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025 37 ILLLVHLLQHAELEIK-EATWAISSATY 63 (129)
Q Consensus 37 lp~L~~ll~~~~~~v~-eA~wal~Ni~~ 63 (129)
+++|+++|.+.|..+. +|+-+|+|..-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 5899999999999999 99999998763
No 188
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=39.61 E-value=45 Score=30.66 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=56.5
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
..++|.|-..+.++.+..| -+.-|+-...+. .++-++.+.+ ..|..|..+++.+|.++.+.+|.++...+
T Consensus 965 esLlpkL~~~~~S~a~~~rs~vvsavKfsisd-~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaa 1035 (1233)
T KOG1824|consen 965 ESLLPKLKLLLRSEASNTRSSVVSAVKFSISD-QPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAA 1035 (1233)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhheeeeeecC-CCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 4688999999999999999 999898888876 4455554443 46677888899999999999999997653
No 189
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=39.39 E-value=97 Score=21.50 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=28.8
Q ss_pred hHHHHHh-hccHHHHHHHhccCChHHH-HHHHHHHHhc
Q 044025 27 CMYTVIV-ANIILLLVHLLQHAELEIK-EATWAISSAT 62 (129)
Q Consensus 27 qiq~vi~-~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~ 62 (129)
-.+.+++ .+.+..++..|.+.++++| .|+-.|+.+|
T Consensus 149 G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 149 GLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5677774 7999999999999999999 9998887765
No 190
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=39.23 E-value=1.2e+02 Score=20.61 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=37.9
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc-CChHHHHhh
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ-GYIKPLCDL 85 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~-g~i~~l~~l 85 (129)
.+...|..=|++.++.|+ -|.-.|-+++..|+++-.+.+.++ -.|+.+.+.
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f 90 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANY 90 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHc
Confidence 356677888888999999 999999999999886655555543 455554443
No 191
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=38.97 E-value=2.1e+02 Score=25.11 Aligned_cols=65 Identities=20% Similarity=0.038 Sum_probs=46.0
Q ss_pred ccHHHHHHHhccCChHHHHHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCC-HHHHHHHHHHHhhc
Q 044025 35 NIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSD-QRIVTVCLNGNRKL 104 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d-~~~~~~aL~al~ni 104 (129)
.-+|.|.-+|.+.++.-+-+...+.-++....++-++ .++|.|+.-+..++ ..+...++.-|.++
T Consensus 199 PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~-----~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~ 264 (851)
T KOG3723|consen 199 PHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQ-----KCIPFLIGHLKDSTHNDIILNILKEIAVY 264 (851)
T ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhccccchhHHHHHHHHHHhc
Confidence 5678888889999887777777777777653333222 37899998776544 56777777777665
No 192
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=38.93 E-value=33 Score=24.27 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=37.9
Q ss_pred HHHHhhccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHh-------------cCChHHHHh--hcCCCCH
Q 044025 29 YTVIVANIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVS-------------QGYIKPLCD--LLVCSDQ 91 (129)
Q Consensus 29 q~vi~~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~-------------~g~i~~l~~--lL~~~d~ 91 (129)
...+-.|.+..=++++.. ..+.-+ |+-|.+||+.+.++- +|+++ +|=++..+. .+...+.
T Consensus 10 K~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C---~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 10 KERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADC---DYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--H---HHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhch---hHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchH
Confidence 344446777666666654 345566 999999999987653 33332 233333333 2334566
Q ss_pred HHHHHHHHHHh
Q 044025 92 RIVTVCLNGNR 102 (129)
Q Consensus 92 ~~~~~aL~al~ 102 (129)
+.+..||..|-
T Consensus 87 e~vD~ALd~lv 97 (161)
T PF09205_consen 87 EYVDLALDILV 97 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777773
No 193
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=37.74 E-value=1.3e+02 Score=20.33 Aligned_cols=84 Identities=12% Similarity=0.030 Sum_probs=55.7
Q ss_pred H-HHHHhhHhHHH--HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHH-HHHHhcCChHHHHhhcCCCC--H
Q 044025 19 T-LDSNIVVCMYT--VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHI-QFLVSQGYIKPLCDLLVCSD--Q 91 (129)
Q Consensus 19 w-~lsNI~~qiq~--vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i-~~lv~~g~i~~l~~lL~~~d--~ 91 (129)
| .+-.||..|.. .--..++..+-.-|.++++.++ -|.-.+--+....- ..+ ..+.+.+.+..|..++.... +
T Consensus 18 w~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg-~~f~~ev~s~~fl~~L~~l~~~~~~~~ 96 (133)
T smart00288 18 WELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG-SKFHLEVASKEFLNELVKLIKPKYPLP 96 (133)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHhHHHHHHHHHHHcCCCCcH
Confidence 6 55566652211 1123566777788889999999 99888888877622 333 34457788899998887533 3
Q ss_pred HHHHHHHHHHhh
Q 044025 92 RIVTVCLNGNRK 103 (129)
Q Consensus 92 ~~~~~aL~al~n 103 (129)
.+..-++..+.+
T Consensus 97 ~Vk~kil~li~~ 108 (133)
T smart00288 97 LVKKRILELIQE 108 (133)
T ss_pred HHHHHHHHHHHH
Confidence 377777777764
No 194
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=37.31 E-value=1.5e+02 Score=26.21 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHHhhccHHHHHHHhccCC-hHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhh
Q 044025 30 TVIVANIILLLVHLLQHAE-LEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRK 103 (129)
Q Consensus 30 ~vi~~g~lp~L~~ll~~~~-~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~n 103 (129)
.++...++|.|...+..++ ..-. .....+.-..+.+. .+.+++|.++.|....|..++..-|+-+.+
T Consensus 288 ~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~e-------yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~ 356 (690)
T KOG1243|consen 288 EIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEE-------YQVRIIPVLLKLFKSPDRQIRLLLLQYIEK 356 (690)
T ss_pred HHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccc-------cccchhhhHHHHhcCcchHHHHHHHHhHHH
Confidence 4555667788887777776 3333 55556655555532 445799999999999999999988888865
No 195
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=36.75 E-value=2.1e+02 Score=22.47 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=35.8
Q ss_pred HHHHhhH------hHHHHHhhc--cHHHHHHHhccC---ChHHH-HHHHHHHHhccCC
Q 044025 20 LDSNIVV------CMYTVIVAN--IILLLVHLLQHA---ELEIK-EATWAISSATYGG 65 (129)
Q Consensus 20 ~lsNI~~------qiq~vi~~g--~lp~L~~ll~~~---~~~v~-eA~wal~Ni~~~~ 65 (129)
|++|++. ....++..+ ++-.|+++++.. ..++| .|..+|.-++...
T Consensus 242 Ai~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 242 AIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 7788755 345566555 999999999875 56889 9999999998753
No 196
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=36.61 E-value=1.1e+02 Score=19.42 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHhhH-hHHHHHh-hccHHHHHHHhccCChHHH-HHHHHHHHhccC
Q 044025 11 PLSKLKENTLDSNIVV-CMYTVIV-ANIILLLVHLLQHAELEIK-EATWAISSATYG 64 (129)
Q Consensus 11 ~~~~~r~~w~lsNI~~-qiq~vi~-~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~ 64 (129)
++..-...-.|+++.. ....+++ .+++..+...|++.|+-+= .|.-+++.++..
T Consensus 17 ~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 17 PPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred cchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 3333334446666555 2212222 4677777888888888888 888888777765
No 197
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=35.93 E-value=92 Score=23.88 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=44.2
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
..++-.+..+|.++...+| ...-.|..+....+.+.- ....++.++..+|+++.- ..||+.+.++
T Consensus 187 ~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~---~~~dlispllrlL~t~~~---~eAL~VLd~~ 252 (262)
T PF14225_consen 187 FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP---HGADLISPLLRLLQTDLW---MEALEVLDEI 252 (262)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC---cchHHHHHHHHHhCCccH---HHHHHHHHHH
Confidence 4567778889999988888 888888888765432211 445688999999876443 3344444443
No 198
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=35.57 E-value=66 Score=17.16 Aligned_cols=15 Identities=13% Similarity=-0.186 Sum_probs=11.1
Q ss_pred HHHHHHHhhH----hHHHH
Q 044025 17 ENTLDSNIVV----CMYTV 31 (129)
Q Consensus 17 ~~w~lsNI~~----qiq~v 31 (129)
..|++-||.+ |.|..
T Consensus 16 ~gWa~fNIg~~Al~Q~~~~ 34 (36)
T PF06298_consen 16 AGWALFNIGRAALNQLQRM 34 (36)
T ss_pred HHHHHHHhHHHHHHHHHHh
Confidence 4599999988 66554
No 199
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=35.06 E-value=1.3e+02 Score=25.95 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=48.5
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCC-CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGG-SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~-~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
++|.|-+-+...+..++ .++-.+.|++.-- ++..+.-.+ ..++|.|-..+...+|+++..+.++++.+
T Consensus 373 mvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 373 MVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred HHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 55666666666778888 8888999998753 333332222 24778888877777999999999999654
No 200
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.42 E-value=65 Score=30.98 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=47.6
Q ss_pred HHHHHHHhccCChHHH--HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhh
Q 044025 37 ILLLVHLLQHAELEIK--EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRK 103 (129)
Q Consensus 37 lp~L~~ll~~~~~~v~--eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~n 103 (129)
...+..++.++++..| ++.|-|+.+-.-|... -..+....+..+|.++|..+|.-.+.++-+|++=
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~-~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlgl 887 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQP-EVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGL 887 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc-hhhhccHHHHHHHHHHhcccHHHHHHHHhcCceE
Confidence 3455666777889998 9999999776544211 1122234566899999999999999999999964
No 201
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.35 E-value=1.3e+02 Score=26.96 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=28.9
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccC
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYG 64 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~ 64 (129)
...+|+|.+=|.++|+.|+ .|+-++|-++.-
T Consensus 180 r~~FprL~EkLeDpDp~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDPDPSVVSAAVSVICELARK 211 (877)
T ss_pred hhhHHHHHHhccCCCchHHHHHHHHHHHHHhh
Confidence 4789999999999999999 999999999976
No 202
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=34.22 E-value=1.1e+02 Score=26.67 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=50.1
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHhh
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-SDQRIVTVCLNGNRK 103 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-~d~~~~~~aL~al~n 103 (129)
.++-.+-+.+.. +..| +|.-.++.++.. .|.++..+++..+++-|...|.. .+..++..++-+|--
T Consensus 70 ~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~-qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Lim 137 (668)
T PF04388_consen 70 HLFDKLNDYFVK--PSYRLQALTLLGHFVRS-QPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIM 137 (668)
T ss_pred HHHHHHHHHHcC--chhHHHHHHHHHHHHhc-CCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 344455555554 4788 999999999986 55788888899999999998864 667777778887754
No 203
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.19 E-value=1.3e+02 Score=25.22 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=11.7
Q ss_pred ChHHH-HHHHHHHHhccC
Q 044025 48 ELEIK-EATWAISSATYG 64 (129)
Q Consensus 48 ~~~v~-eA~wal~Ni~~~ 64 (129)
+..+| .|+||+.+++..
T Consensus 493 ~~~iR~~Av~Alr~~a~~ 510 (574)
T smart00638 493 STFIRLAAILALRNLAKR 510 (574)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 45677 888888777643
No 204
>PF13606 Ank_3: Ankyrin repeat
Probab=33.93 E-value=51 Score=16.20 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=11.6
Q ss_pred cCCCHHHHHHHHhcCC
Q 044025 63 YGGSHEHIQFLVSQGY 78 (129)
Q Consensus 63 ~~~~~~~i~~lv~~g~ 78 (129)
..++.+-+++|++.|+
T Consensus 11 ~~g~~e~v~~Ll~~ga 26 (30)
T PF13606_consen 11 SNGNIEIVKYLLEHGA 26 (30)
T ss_pred HhCCHHHHHHHHHcCC
Confidence 3357788888888774
No 205
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=32.28 E-value=2.9e+02 Score=22.77 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=61.1
Q ss_pred ChHHHHHHH-HHHHhhH---hHHH-HHhhccHHHHHHHhccC-----ChHHH-HHHHHHHHhccCCCHHHHHHHHh-cCC
Q 044025 11 PLSKLKENT-LDSNIVV---CMYT-VIVANIILLLVHLLQHA-----ELEIK-EATWAISSATYGGSHEHIQFLVS-QGY 78 (129)
Q Consensus 11 ~~~~~r~~w-~lsNI~~---qiq~-vi~~g~lp~L~~ll~~~-----~~~v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~ 78 (129)
+....++|- ||+|+.- ..|+ ..+.|..+.+++.|+.. +.++. =....+-=++.. +++....+++ .+.
T Consensus 45 ~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~-~~~~~~~L~~e~~~ 123 (446)
T PF10165_consen 45 DPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTAL-RPDDRKKLIEEHHG 123 (446)
T ss_pred ChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC-ChhHHHHHHHHhhh
Confidence 334445665 9999988 3444 45889999999999987 67777 766666656655 4455666764 466
Q ss_pred hHHHHhhcCC-----------------CCHHHHHHHHHHHhhc
Q 044025 79 IKPLCDLLVC-----------------SDQRIVTVCLNGNRKL 104 (129)
Q Consensus 79 i~~l~~lL~~-----------------~d~~~~~~aL~al~ni 104 (129)
+..+...|.. .+.....-+|+.+-|+
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNi 166 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNI 166 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHh
Confidence 6555554421 1344566677777777
No 206
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=32.26 E-value=1.8e+02 Score=20.35 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=13.6
Q ss_pred CCCChHHHHHHH-HHHHhhH
Q 044025 8 PKLPLSKLKENT-LDSNIVV 26 (129)
Q Consensus 8 ~~~~~~~~r~~w-~lsNI~~ 26 (129)
-+++....|++- +++.|.|
T Consensus 21 ~e~s~~iR~E~lr~lGilGA 40 (160)
T PF11865_consen 21 TEQSQSIRREALRVLGILGA 40 (160)
T ss_pred hCCCHHHHHHHHHHhhhccc
Confidence 345667777775 8888888
No 207
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.12 E-value=2.3e+02 Score=25.29 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=50.0
Q ss_pred HHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHH
Q 044025 37 ILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQ 115 (129)
Q Consensus 37 lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~ 115 (129)
+-.+-.+|..+++.+| -.--|++=++.. +|+ . +++.-|..+....|.++...+..+++-+.-++.+-..++
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvS-NPq-~------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~ 713 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVS-NPQ-V------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQ 713 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccC-CCc-c------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHH
Confidence 4566778888999999 888888877765 543 3 256677777777888888888888876643333333334
Q ss_pred HH
Q 044025 116 MI 117 (129)
Q Consensus 116 ~i 117 (129)
++
T Consensus 714 mL 715 (878)
T KOG2005|consen 714 ML 715 (878)
T ss_pred HH
Confidence 33
No 208
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=32.12 E-value=92 Score=17.00 Aligned_cols=18 Identities=11% Similarity=-0.175 Sum_probs=13.2
Q ss_pred HHHHHHHHhhH----hHHHHHh
Q 044025 16 KENTLDSNIVV----CMYTVIV 33 (129)
Q Consensus 16 r~~w~lsNI~~----qiq~vi~ 33 (129)
-..|++-||.+ |.|..+.
T Consensus 15 A~~Wa~fNIg~~Al~Q~q~~~~ 36 (40)
T PRK13240 15 AAGWAVFNIGKAAREQFQRFLN 36 (40)
T ss_pred HHHHHHHHhhHHHHHHHHHHHh
Confidence 34599999988 7776653
No 209
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=31.97 E-value=1.4e+02 Score=23.35 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=37.5
Q ss_pred hHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 49 LEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 49 ~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+.+. .|.-+-+-+.+.-....+...+ ...+|.|..+|.++|..++..|=++|.=+
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4566 6655555555543333444333 34689999999999999999999988533
No 210
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.36 E-value=1.9e+02 Score=26.03 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=49.1
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHhhcc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-CSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~~d~~~~~~aL~al~ni~ 105 (129)
...+..|.++|++.+..+| =|.-..+.+++.+ ..+..++.. .....+.|+ ..|.++++.+++-|.-+.
T Consensus 328 ~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~---~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 328 SRAVNQLGQFLSHRETNIRYLALESMCKLASSE---FSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHHhcc---chHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 3566677778888888888 8888888888763 223334333 666777777 688999999999887664
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=30.35 E-value=1.2e+02 Score=28.74 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=41.8
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCC---CHHHHHHHHhcCChHHHHhhcCCCCHHHH
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGG---SHEHIQFLVSQGYIKPLCDLLVCSDQRIV 94 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~---~~~~i~~lv~~g~i~~l~~lL~~~d~~~~ 94 (129)
.-++|.++.++.+.+.+|| .|.-+|+-+..-- .+... .+.-.=++|.|-.|+..+++..+
T Consensus 461 DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da-niF~eYlfP~L~~l~~d~~~~~v 524 (1431)
T KOG1240|consen 461 DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA-NIFPEYLFPHLNHLLNDSSAQIV 524 (1431)
T ss_pred hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc-hhhHhhhhhhhHhhhccCcccee
Confidence 3689999999999999999 9999998776431 12222 12223367889998877444433
No 212
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.33 E-value=2.6e+02 Score=24.40 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=51.9
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhcccC
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMD 107 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~ 107 (129)
.++..+...++++..+.| ++.--+..+-.. .|.|+ ++ ...+.+-|..-|...+..++..+|.-+.++.+.
T Consensus 336 ~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~-~p~ql--~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 336 SIIEVLTKYLSDDREETRIAVLNWIILLYHK-APGQL--LVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHhh-Ccchh--hhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 577888889999999999 887666665544 23332 33 456788888888777888888899999988653
No 213
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=30.33 E-value=2e+02 Score=25.37 Aligned_cols=70 Identities=9% Similarity=0.082 Sum_probs=54.6
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+|.+-.+.+-+.+.|-.|| ..+-.+.-+...- ..+...+-+|.+..+.+=+..-.+.++..|+.++...+
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v--~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q 160 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVV--REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ 160 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 7788888888888999999 9888887776542 44667777788888887666677888888999997654
No 214
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=30.17 E-value=2.7e+02 Score=21.76 Aligned_cols=75 Identities=11% Similarity=0.203 Sum_probs=51.8
Q ss_pred HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh--------cCChHHH-HhhcCCCCHHHHHHH
Q 044025 28 MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS--------QGYIKPL-CDLLVCSDQRIVTVC 97 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~--------~g~i~~l-~~lL~~~d~~~~~~a 97 (129)
+..++..+++|.....+..|....| -|.+.+.-+..+. .-..|... ..++..+ ..+.+.+++.+...+
T Consensus 161 i~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhv 238 (293)
T KOG3036|consen 161 IRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHV 238 (293)
T ss_pred HHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4555678999999999999999999 9999998776542 11222221 1133333 334456788888888
Q ss_pred HHHHhhc
Q 044025 98 LNGNRKL 104 (129)
Q Consensus 98 L~al~ni 104 (129)
++..-++
T Consensus 239 iRcYlrL 245 (293)
T KOG3036|consen 239 IRCYLRL 245 (293)
T ss_pred HHHHHHh
Confidence 8888665
No 215
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.01 E-value=1.2e+02 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=26.2
Q ss_pred hccHHHHHHHhcc-CChHHH-HHHHHHHHhccC
Q 044025 34 ANIILLLVHLLQH-AELEIK-EATWAISSATYG 64 (129)
Q Consensus 34 ~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~ 64 (129)
...+|..+++|+. .++.|| -|+.||+=.|+|
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 4567888999885 599999 999999988877
No 216
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=29.42 E-value=2.3e+02 Score=23.82 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=45.4
Q ss_pred HHHHHH-HHHHhhH--hHH-----------HHHhhccHHHHHHHhc----cCChHHH-HHHHHHHHhccCCCHHHHHHHH
Q 044025 14 KLKENT-LDSNIVV--CMY-----------TVIVANIILLLVHLLQ----HAELEIK-EATWAISSATYGGSHEHIQFLV 74 (129)
Q Consensus 14 ~~r~~w-~lsNI~~--qiq-----------~vi~~g~lp~L~~ll~----~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv 74 (129)
....+| +++.+.. ... ..+-..+++.+.+.+. .+|.+.+ -+.-||+|+-.. .
T Consensus 451 l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~---~------ 521 (618)
T PF01347_consen 451 LRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP---E------ 521 (618)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G---G------
T ss_pred HHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc---h------
Confidence 344567 8888877 222 1222456666666665 4677888 999999999653 2
Q ss_pred hcCChHHHHhhcCC---CCHHHHHHHHHHHhhc
Q 044025 75 SQGYIKPLCDLLVC---SDQRIVTVCLNGNRKL 104 (129)
Q Consensus 75 ~~g~i~~l~~lL~~---~d~~~~~~aL~al~ni 104 (129)
.++.+...+.. ....++..|++|+.++
T Consensus 522 ---~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~ 551 (618)
T PF01347_consen 522 ---SIPVLLPYIEGKEEVPHFIRVAAIQALRRL 551 (618)
T ss_dssp ---GHHHHHTTSTTSS-S-HHHHHHHHHTTTTG
T ss_pred ---hhHHHHhHhhhccccchHHHHHHHHHHHHH
Confidence 23333333332 3456667778888765
No 217
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.37 E-value=2.1e+02 Score=25.95 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHH
Q 044025 20 LDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCL 98 (129)
Q Consensus 20 ~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL 98 (129)
.|||++ ..+.+ +-+++.|-...++.|.++- .|.-||+-+++. .-.-... ++..|+.+|.+.|..++..+.
T Consensus 380 iLs~La-~esni--~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~-~~sv~~t-----CL~gLv~Llsshde~Vv~eaV 450 (968)
T KOG1060|consen 380 ILSNLA-NESNI--SEILRELQTYIKSSDRSFAAAAVKAIGRCASR-IGSVTDT-----CLNGLVQLLSSHDELVVAEAV 450 (968)
T ss_pred HHHHHh-hhccH--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHh-hCchhhH-----HHHHHHHHHhcccchhHHHHH
Q ss_pred HHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 99 NGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 99 ~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
-.|..+.+..-.+...-...=+..++.++
T Consensus 451 ~vIk~Llq~~p~~h~~ii~~La~lldti~ 479 (968)
T KOG1060|consen 451 VVIKRLLQKDPAEHLEILFQLARLLDTIL 479 (968)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHhhhhh
No 218
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.27 E-value=2.9e+02 Score=25.02 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=40.6
Q ss_pred HHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 38 LLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 38 p~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
..++++|+++|.-+| .|.--..-++...+ ++.+ .+.|.+.|...|+++...+...+..+
T Consensus 353 ~tIleCL~DpD~SIkrralELs~~lvn~~N---v~~m-----v~eLl~fL~~~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 353 STILECLKDPDVSIKRRALELSYALVNESN---VRVM-----VKELLEFLESSDEDFKADIASKIAEL 412 (866)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhcccc---HHHH-----HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 457888999999999 88877777776533 4443 34667777766777766666666443
No 219
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=29.09 E-value=76 Score=15.48 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=11.4
Q ss_pred ccCCCHHHHHHHHhcCC
Q 044025 62 TYGGSHEHIQFLVSQGY 78 (129)
Q Consensus 62 ~~~~~~~~i~~lv~~g~ 78 (129)
+..+..+-+++|+++|+
T Consensus 10 ~~~~~~~~v~~Ll~~ga 26 (33)
T PF00023_consen 10 AQRGHPDIVKLLLKHGA 26 (33)
T ss_dssp HHTTCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCcC
Confidence 34456677888887765
No 220
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=29.04 E-value=4e+02 Score=23.36 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=43.3
Q ss_pred HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 53 EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 53 eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
-.+-.+..++.. +++++..++ +.++..++..++-+++.++-+.|.+-++.+.
T Consensus 500 ~~~~il~rls~~-~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~ 552 (727)
T PF12726_consen 500 LISQILERLSDF-DPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAF 552 (727)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHh
Confidence 455566667766 789999998 5799999999999999999999999988764
No 221
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=28.87 E-value=17 Score=24.16 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=24.4
Q ss_pred cHHHHHHHhccCChHHH-HHH-HHHHHhccCCCHHHHHHHHhcCChH
Q 044025 36 IILLLVHLLQHAELEIK-EAT-WAISSATYGGSHEHIQFLVSQGYIK 80 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~-wal~Ni~~~~~~~~i~~lv~~g~i~ 80 (129)
--..|..||+|+++.|| -|+ .+|......+ ..+++.+.+.|..|
T Consensus 48 ~r~aLl~LL~hpn~~VRl~AA~~~L~~~p~eA-~~~Le~ia~~~~~~ 93 (106)
T PF09450_consen 48 QRDALLPLLKHPNMQVRLWAAAHTLRYAPEEA-RKVLEEIASSKWFP 93 (106)
T ss_dssp GGGGGGGGGGSS-HHHHHHHHHTTTTT-HHHH-HHHHHHHHHHT-TT
T ss_pred hHHHHHHHHcCCChhHHHHHHHHHHHhCHHHH-HHHHHHHHHcCCCC
Confidence 35778889999999999 554 4443222211 23455555555554
No 222
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=28.80 E-value=1e+02 Score=16.45 Aligned_cols=10 Identities=20% Similarity=-0.266 Sum_probs=8.1
Q ss_pred HHHHHHHhhH
Q 044025 17 ENTLDSNIVV 26 (129)
Q Consensus 17 ~~w~lsNI~~ 26 (129)
..|++-||.+
T Consensus 16 ~~Wa~fNIg~ 25 (36)
T CHL00196 16 ASWALFNIGR 25 (36)
T ss_pred HHHHHHHhHH
Confidence 4589999988
No 223
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=28.47 E-value=1.6e+02 Score=22.85 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=52.6
Q ss_pred HHHhhccHHHHHHHhccC-----ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhh
Q 044025 30 TVIVANIILLLVHLLQHA-----ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRK 103 (129)
Q Consensus 30 ~vi~~g~lp~L~~ll~~~-----~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~n 103 (129)
.++++.+.-.|...|+.. -...| -..-+++.++...+++-+.++.+..++|.....|.....--..+|...+.+
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 355777665555555432 24668 889999999998888999999999999999999987655555556666666
Q ss_pred c
Q 044025 104 L 104 (129)
Q Consensus 104 i 104 (129)
|
T Consensus 166 I 166 (262)
T PF04078_consen 166 I 166 (262)
T ss_dssp H
T ss_pred H
Confidence 5
No 224
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.94 E-value=1.6e+02 Score=26.56 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=49.9
Q ss_pred hhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 33 VANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 33 ~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+.-++|.+-..+++...-+. ||+.++.++..- +..++.- ++..|-.++.+..+.++=.+.+.|..++
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~-~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvA 310 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT-NSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVA 310 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc-CHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34677888888999999999 999999999865 3333322 5566666666788888888888887653
No 225
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.89 E-value=2.1e+02 Score=24.34 Aligned_cols=66 Identities=9% Similarity=0.113 Sum_probs=40.3
Q ss_pred hccHHHHHHH----hccCChHHH-HHHHHHHHhccCCCHHHHHHHHh---cCChHHHHhhcCCCCHHHHHHHHHHHhh
Q 044025 34 ANIILLLVHL----LQHAELEIK-EATWAISSATYGGSHEHIQFLVS---QGYIKPLCDLLVCSDQRIVTVCLNGNRK 103 (129)
Q Consensus 34 ~g~lp~L~~l----l~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~---~g~i~~l~~lL~~~d~~~~~~aL~al~n 103 (129)
.|.+.-+... .++++..+| -|+..|.|.+.+. |+..+.-.. -++|..|++.++ .+++..++.++..
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th~~~~ldaii~gL~D~~~---~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA-PDKVRTHKTTQLDAIIRGLYDDLN---EEVQLEAMKCLTM 326 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC-cHHHHHhHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHH
Confidence 3444444444 345677889 9999999999984 332222211 256777777554 5566666666643
No 226
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.27 E-value=1.1e+02 Score=26.90 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=34.2
Q ss_pred hhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 33 VANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 33 ~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
|.+++|..+++|+.. ++.+| -.+.|++=.|+| +-++. ++..|-.|+.....-+++-+.-|++-|
T Consensus 583 D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag-~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 583 DRDLLVGTVELLSESHNFHVRAGVAVALGIACAG-TGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcC-CccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 345566666666543 66666 666666666555 21222 233444444444445555566666665
No 227
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=26.83 E-value=1.9e+02 Score=22.08 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=24.9
Q ss_pred hhccHHHHHHHhccCCh-------HHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025 33 VANIILLLVHLLQHAEL-------EIK-EATWAISSATYGGSHEHIQFLVS 75 (129)
Q Consensus 33 ~~g~lp~L~~ll~~~~~-------~v~-eA~wal~Ni~~~~~~~~i~~lv~ 75 (129)
+...+|.++++++.++. |.- |-.+.+-+...+|+.++++.+++
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~ 121 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDIEPLKELIE 121 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHh
Confidence 45788999999986542 333 44444444444445565555543
No 228
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=26.62 E-value=1.4e+02 Score=28.00 Aligned_cols=96 Identities=10% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHH-H-HHHHhhH-hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC
Q 044025 13 SKLKEN-T-LDSNIVV-CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV 87 (129)
Q Consensus 13 ~~~r~~-w-~lsNI~~-qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~ 87 (129)
..+|+. | ++.++|- +=+-. ...+|.|++-|... +..+| ...-|++-+|..-|.-.=+| ||.+..-|.
T Consensus 945 ~~vra~~vvTlakmcLah~~La--Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Y------iP~I~~~L~ 1016 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA--KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRY------IPMIAASLC 1016 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHh------hHHHHHHhc
Q ss_pred CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccch
Q 044025 88 CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGL 123 (129)
Q Consensus 88 ~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl 123 (129)
.+++-+++..+--|.++.+ ...+..-|.|
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq-------~~~vKw~G~L 1045 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQ-------FGIVKWNGEL 1045 (1529)
T ss_pred CchHHHHHHHHHHHHHHHh-------hhhhhcchhh
No 229
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=26.51 E-value=2.2e+02 Score=26.61 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=42.5
Q ss_pred hccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 44 LQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 44 l~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+.|=|..+| -|+|+|.++... .|+ .+..+++|++++...+.|...+.-+--+.+.+
T Consensus 553 v~HWd~~irelaa~aL~~Ls~~-~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 553 VCHWDVKIRELAAYALHKLSLT-EPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred cccccHHHHHHHHHHHHHHHHh-hHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence 456699999 999999998765 333 34457889999988888988877776666554
No 230
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=26.13 E-value=1e+02 Score=24.65 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=42.8
Q ss_pred HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccC--CCH-HHHHHHHh-cCChHHHHhh
Q 044025 28 MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYG--GSH-EHIQFLVS-QGYIKPLCDL 85 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~--~~~-~~i~~lv~-~g~i~~l~~l 85 (129)
.|++.++|+++.++.-+...+++.| ++.-..+|+-.. |+. -...|+.. ..++..|+.-
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~ 134 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG 134 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh
Confidence 5778899999999999999999999 999999998632 232 23556663 3455555443
No 231
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.10 E-value=1.6e+02 Score=27.65 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=29.4
Q ss_pred hHHHHHHH-HHHHhhHhHHHHHhhccHHHHHHHhc-cCChHHH-HHHHHHHHhc
Q 044025 12 LSKLKENT-LDSNIVVCMYTVIVANIILLLVHLLQ-HAELEIK-EATWAISSAT 62 (129)
Q Consensus 12 ~~~~r~~w-~lsNI~~qiq~vi~~g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~ 62 (129)
+..+.+|. +++-+. .+..-+-.--+|.|+..+. ++++.+| .+.-+++-++
T Consensus 937 p~Lq~AAtLaL~klM-~iSa~fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 937 PELQAAATLALGKLM-CISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 45556665 776655 3333344455667777766 5666667 6666665554
No 232
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=26.08 E-value=3.5e+02 Score=21.82 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=42.9
Q ss_pred HHHHHhhccHHHHHHHhc-cC---ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCC
Q 044025 28 MYTVIVANIILLLVHLLQ-HA---ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSD 90 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~-~~---~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d 90 (129)
...+-++|+.+.+.+.+. .+ ..++- ..--+++-+|-. .+=.+.+.+.+.++.|.+.+.+.+
T Consensus 144 ~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN--~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 144 FSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN--NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred hHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC--HHHHHHHHhcChHHHHHHHhCCHH
Confidence 344558999999999998 54 34444 555556666654 255667778899999999887644
No 233
>PF06540 GMAP: Galanin message associated peptide (GMAP); InterPro: IPR013068 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. This domain represents the galanin message-associated peptide (GMAP) domain which is found C-terminal to the galanin domain in the preprogalanin precursor protein. GMAP sequences in different species show a high degree of homology, but the biological function of the GMAP peptide is not known [].
Probab=25.97 E-value=1.1e+02 Score=18.34 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 89 SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 89 ~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
.|..+++.+++-|.-+ .+.|+|.|++|-
T Consensus 21 ~d~nivrTiiEFLtfL-----------hLKEaGALd~Lp 48 (62)
T PF06540_consen 21 ADDNIVRTIIEFLTFL-----------HLKEAGALDNLP 48 (62)
T ss_pred chhHHHHHHHHHHHHH-----------HHHHhcchhccC
Confidence 5677888887777665 366788887764
No 234
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=25.85 E-value=1.6e+02 Score=26.90 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=46.3
Q ss_pred HHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 37 ILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 37 lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
-..|.+++..++.+++ +++++++-++.-.-|++-.. .+|.+.+++.+.+..=+..+++.+..+
T Consensus 92 Re~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpE-----lv~~i~~~l~~~n~n~i~~am~vL~el 155 (1005)
T KOG2274|consen 92 REQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPE-----LVPFILKLLSSGNENSIHGAMRVLAEL 155 (1005)
T ss_pred HHHHHhhhhccccccchHHHHHHHHHHhccCchhhHH-----HHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 3456666678889999 99999999998756666555 456777777766666666777777554
No 235
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=25.81 E-value=2.7e+02 Score=21.78 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=33.7
Q ss_pred HHHHHHhccC-CCHHHHHHHHhcC--ChHHHHhhcCCCC---HHHHHHHHHHHhhcc
Q 044025 55 TWAISSATYG-GSHEHIQFLVSQG--YIKPLCDLLVCSD---QRIVTVCLNGNRKLG 105 (129)
Q Consensus 55 ~wal~Ni~~~-~~~~~i~~lv~~g--~i~~l~~lL~~~d---~~~~~~aL~al~ni~ 105 (129)
+-|+++++.- .+++....++..+ .+..|++++..++ ..++..|+++|+-+.
T Consensus 240 llAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~ 296 (329)
T PF06012_consen 240 LLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAIS 296 (329)
T ss_pred HHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 3455555321 2334555666665 9999999997644 467888899998774
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=25.72 E-value=1.2e+02 Score=28.77 Aligned_cols=89 Identities=13% Similarity=0.040 Sum_probs=54.1
Q ss_pred hHHHHHHH--HHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhc
Q 044025 12 LSKLKENT--LDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86 (129)
Q Consensus 12 ~~~~r~~w--~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL 86 (129)
.+.+|.+. .|+-++. +-+ -++..++|.|.+-|.++++.|- .|..+++-++..|.-+. .++++ +++-..-+|
T Consensus 630 Dw~LR~aFfdsI~gvsi~VG~r-s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K-~~v~~--i~~~v~PlL 705 (1431)
T KOG1240|consen 630 DWRLRGAFFDSIVGVSIFVGWR-SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK-PAVKD--ILQDVLPLL 705 (1431)
T ss_pred cHHHHHHHHhhccceEEEEeee-eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch-HHHHH--HHHhhhhhe
Confidence 44555553 4444444 221 1356788888888888888888 88888888887653221 22222 344444556
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 044025 87 VCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 87 ~~~d~~~~~~aL~al~ni 104 (129)
.+++.=+++.++.-|..+
T Consensus 706 ~hPN~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 706 CHPNLWIRRAVLGIIAAI 723 (1431)
T ss_pred eCchHHHHHHHHHHHHHH
Confidence 677777777776666443
No 237
>PF06436 Pneumovirus_M2: Pneumovirus matrix protein 2 (M2); InterPro: IPR009452 This entry consists of several Pneumovirus matrix glycoprotein M2 sequences. This family functions as a transcription processivity factor that is essential for virus replication [].; GO: 0005198 structural molecule activity, 0046782 regulation of viral transcription, 0019031 viral envelope; PDB: 2L9J_A.
Probab=25.06 E-value=2.2e+02 Score=20.03 Aligned_cols=55 Identities=11% Similarity=-0.056 Sum_probs=29.2
Q ss_pred HHHHhhH-----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025 20 LDSNIVV-----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS 75 (129)
Q Consensus 20 ~lsNI~~-----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~ 75 (129)
++|-|+- .+|.. .-|....+-..+.+...-.+ .||++++|+...-....++..-+
T Consensus 27 ~lS~ISGa~~~dRT~e~-~LG~~~Vlq~Yi~~~~nITK~~AC~sl~~il~~L~~~dvk~aRd 87 (157)
T PF06436_consen 27 GLSLISGAGREDRTQEY-ALGSIGVLQSYIESNNNITKSSACYSLYNILKQLQEDDVKQARD 87 (157)
T ss_dssp -------S------SST-T-SHHHHHHHHHH-SS---HHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred chhhccCCCcccchhhh-hhhhHHHHHHHhccccchhHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 5565554 23332 35777777788888888899 99999999998755555555544
No 238
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=24.73 E-value=85 Score=27.54 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhh
Q 044025 53 EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRK 103 (129)
Q Consensus 53 eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~n 103 (129)
=+.||+.-+...|+.+.+..|++ .||.|++=+......++.-+++.|++
T Consensus 356 IstyAITtLLKTGt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl 404 (898)
T COG5240 356 ISTYAITTLLKTGTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSL 404 (898)
T ss_pred chHHHHHHHHHcCchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHh
Confidence 56667776666667677776664 45555554433333344445555543
No 239
>PF15573 Imm27: Immunity protein 27
Probab=24.69 E-value=1.2e+02 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=15.1
Q ss_pred HHHHHHhccCChHH-H-HHHHHHHHhccC
Q 044025 38 LLLVHLLQHAELEI-K-EATWAISSATYG 64 (129)
Q Consensus 38 p~L~~ll~~~~~~v-~-eA~wal~Ni~~~ 64 (129)
|.|++++.+...++ - =+....|.+|++
T Consensus 49 ~LLiqLMN~TkDE~vLNLCiRlFcSV~TH 77 (259)
T PF15573_consen 49 NLLIQLMNQTKDEAVLNLCIRLFCSVATH 77 (259)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhhcch
Confidence 55666666543333 3 555666666665
No 240
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=24.69 E-value=2.5e+02 Score=25.11 Aligned_cols=80 Identities=4% Similarity=-0.022 Sum_probs=57.1
Q ss_pred HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHH
Q 044025 20 LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVC 97 (129)
Q Consensus 20 ~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~a 97 (129)
+++-++. .-+.+....++|.+.++..++.+.|| .++..+.-+...-+. ...+.-+.|.+..+-..+|.++.-.+
T Consensus 580 si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~~dvr~~a 655 (759)
T KOG0211|consen 580 SIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQELDVRYRA 655 (759)
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcccchhHHH
Confidence 5554444 55667778899999999999999999 999999877765332 33444566667676666777766666
Q ss_pred HHHHhh
Q 044025 98 LNGNRK 103 (129)
Q Consensus 98 L~al~n 103 (129)
..+.+-
T Consensus 656 ~~a~~~ 661 (759)
T KOG0211|consen 656 ILAFGS 661 (759)
T ss_pred HHHHHH
Confidence 666654
No 241
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=24.64 E-value=2.5e+02 Score=19.65 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=38.6
Q ss_pred CChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 47 AELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 47 ~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.|..+- +...++.+.-.... =.+... .-++|.+..+|.+.+..-+..+|+++..+
T Consensus 41 ~D~svlvD~L~vl~~~~~~~~-~tLd~c--~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i 96 (164)
T PF13925_consen 41 NDPSVLVDVLSVLNQSLKPEK-WTLDLC--VDLLPLIEELLQSKYESYISVALEMLRSI 96 (164)
T ss_pred CCchHHHHHHHHHHHhcCcCc-ccHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 677777 88888776555421 011111 13789999999999999999999999766
No 242
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.55 E-value=2e+02 Score=25.97 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=17.0
Q ss_pred hccCChHHH-HHHHHHHHhccCCCHHH
Q 044025 44 LQHAELEIK-EATWAISSATYGGSHEH 69 (129)
Q Consensus 44 l~~~~~~v~-eA~wal~Ni~~~~~~~~ 69 (129)
.++.+.||| .|+-+|+-++.. +|++
T Consensus 564 VsD~nDDVrRaAVialGFVl~~-dp~~ 589 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFR-DPEQ 589 (929)
T ss_pred ccccchHHHHHHHHHheeeEec-Chhh
Confidence 445677888 888888777765 4554
No 243
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.50 E-value=3e+02 Score=24.35 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=24.9
Q ss_pred hccHHHHHHH-hccCChHHH-HHHHHHHHhccC
Q 044025 34 ANIILLLVHL-LQHAELEIK-EATWAISSATYG 64 (129)
Q Consensus 34 ~g~lp~L~~l-l~~~~~~v~-eA~wal~Ni~~~ 64 (129)
.|++..+... .+.++.++| .|+.|++-+|-.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~ 582 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD 582 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEec
Confidence 4566666666 677899999 999999998875
No 244
>PF10798 YmgB: Biofilm development protein YmgB/AriR; InterPro: IPR024753 YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid, which indicates that YmgB has an important function in acid-resistance []. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole) [].; GO: 0042710 biofilm formation, 0071229 cellular response to acid; PDB: 2OXL_B.
Probab=24.45 E-value=64 Score=19.16 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=23.4
Q ss_pred HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHH
Q 044025 31 VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHE 68 (129)
Q Consensus 31 vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~ 68 (129)
+=+..++-.|+.-|.+....++ +.....-.+..+-||+
T Consensus 21 vsnKaII~~LI~~LE~e~Dv~~~dvyR~~LEiVv~~T~D 59 (61)
T PF10798_consen 21 VSNKAIILKLIHRLESESDVVQLDVYRNALEIVVGRTPD 59 (61)
T ss_dssp -SHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHccCCC
Confidence 4456778888888888877777 7777666665554444
No 245
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.24 E-value=1.5e+02 Score=26.60 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=54.2
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+|.+..+.+-..+.+-.|| -.|-.|.-+... ..++..-+-.++...+..=+....|.++..|+.+|.+.+
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ 154 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ 154 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence 6777778877888899999 998887766652 245666666677777777677778999999999998875
No 246
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.69 E-value=3.3e+02 Score=25.78 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=45.8
Q ss_pred HHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHH
Q 044025 37 ILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCL 98 (129)
Q Consensus 37 lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL 98 (129)
-+.|..-|...++.+| -|.-+++++.-. ++++- .|.++-+.-+|..+++.+...|=
T Consensus 1000 T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiKV---KGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 1000 TEHLYRRLRDESPSVRKTALLVLSHLILN---DMIKV---KGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred hHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhHh---cccHHHHHHHhcCCcHHHHHHHH
Confidence 3667778889999999 999999999976 34432 69999999999888888877766
No 247
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=23.65 E-value=2.1e+02 Score=18.37 Aligned_cols=68 Identities=7% Similarity=0.043 Sum_probs=44.8
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh----cC--CCCHHHHHHHHHHHh
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL----LV--CSDQRIVTVCLNGNR 102 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l----L~--~~d~~~~~~aL~al~ 102 (129)
.++..+-.-|.+.++.++ -|...+-.++..+.+.-..++.+...+-.++.+ .. ..+..+...+++.+.
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 466677777888999999 999999999988765544455555555555432 11 134566666665544
No 248
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=23.41 E-value=1.5e+02 Score=21.61 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=28.3
Q ss_pred HHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025 37 ILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS 75 (129)
Q Consensus 37 lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~ 75 (129)
...+..++.+.++-|| -..|+|..++.. +++.+...++
T Consensus 152 ~~~~~~~~~d~e~fI~KAiGW~LRe~~k~-d~~~V~~fl~ 190 (208)
T cd07064 152 FEIILANLGSKEFFIRKAIGWALREYSKT-NPDWVRDFVA 190 (208)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHhcc-CHHHHHHHHH
Confidence 3445556777888999 999999999987 6666665554
No 249
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=23.37 E-value=2.7e+02 Score=19.45 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=48.9
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc--CChHHHHhhcCCCC-HHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ--GYIKPLCDLLVCSD-QRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~--g~i~~l~~lL~~~d-~~~~~~aL~al~ni 104 (129)
.....++..+|++.+++-| .++-.+.-.+..+.. +.+.++ -.++.+...|+.++ +.+...+..++..+
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~---e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW---EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4567788899999999999 888777776665333 234333 36788888887644 56677788888776
No 250
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=23.05 E-value=1.9e+02 Score=24.15 Aligned_cols=84 Identities=13% Similarity=0.039 Sum_probs=58.5
Q ss_pred HHHHHHhhH----hHHHHHhhccHHHHH----HHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025 18 NTLDSNIVV----CMYTVIVANIILLLV----HLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88 (129)
Q Consensus 18 ~w~lsNI~~----qiq~vi~~g~lp~L~----~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~ 88 (129)
.|...++.. .+..++.+++.|.+- .--...+...| -|.-+|+.++.. .|.-+ .-+-+.+..|.+-|..
T Consensus 349 ~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~-~p~l~--~~d~~li~~LF~sL~~ 425 (501)
T PF13001_consen 349 SWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKR-APSLF--SKDLSLIEFLFDSLED 425 (501)
T ss_pred hHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHcc-Ccccc--cccHHHHHHHHHHhhC
Confidence 356666555 455567777877772 01234577889 999999999987 33321 0134678888888888
Q ss_pred CCHHHHHHHHHHHhhc
Q 044025 89 SDQRIVTVCLNGNRKL 104 (129)
Q Consensus 89 ~d~~~~~~aL~al~ni 104 (129)
+++++...+-+||..+
T Consensus 426 ~~~evr~sIqeALssl 441 (501)
T PF13001_consen 426 ESPEVRVSIQEALSSL 441 (501)
T ss_pred cchHHHHHHHHHHHHH
Confidence 8899999999999876
No 251
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=22.06 E-value=3e+02 Score=19.60 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=34.9
Q ss_pred HHHHHhhH---h-HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHH
Q 044025 19 TLDSNIVV---C-MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQ 71 (129)
Q Consensus 19 w~lsNI~~---q-iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~ 71 (129)
-.+-++.- . -+.|-..--++.|+..|...+.++| .|.--+--+..++++++.+
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~ 139 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRK 139 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHH
Confidence 35556555 2 3334445678899999999999999 8876665555665544443
No 252
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=21.83 E-value=2e+02 Score=24.74 Aligned_cols=66 Identities=8% Similarity=0.155 Sum_probs=44.6
Q ss_pred HHHHhhH-----hHHHHHhhccHHHHHHHhccC-ChH------HH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhc
Q 044025 20 LDSNIVV-----CMYTVIVANIILLLVHLLQHA-ELE------IK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86 (129)
Q Consensus 20 ~lsNI~~-----qiq~vi~~g~lp~L~~ll~~~-~~~------v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL 86 (129)
.+...|+ .-.+++ +-+|.+.+.++.+ |++ +- ++.-++.-+++. . .-.+.++..|.++.++++-
T Consensus 86 vLacFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e-~G~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 86 VLACFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-E-AGLMTLIASGGLRVIAQMY 161 (698)
T ss_pred HHHHHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-C-chhHHHHhcCchHHHHHHH
Confidence 6666676 223343 4689999998864 444 44 666677666654 3 3456899999999999876
Q ss_pred CCC
Q 044025 87 VCS 89 (129)
Q Consensus 87 ~~~ 89 (129)
...
T Consensus 162 ~~~ 164 (698)
T KOG2611|consen 162 ELP 164 (698)
T ss_pred hCC
Confidence 543
No 253
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=21.54 E-value=61 Score=17.99 Aligned_cols=10 Identities=30% Similarity=0.621 Sum_probs=6.6
Q ss_pred HHHHHHHHhc
Q 044025 53 EATWAISSAT 62 (129)
Q Consensus 53 eA~wal~Ni~ 62 (129)
-+.|+++|+-
T Consensus 29 p~gWVLshL~ 38 (43)
T cd00930 29 PAGWVLSHLE 38 (43)
T ss_pred hHHHHHHHHH
Confidence 3677777764
No 254
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=21.15 E-value=48 Score=16.04 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=12.2
Q ss_pred hhccHHHHHHHhccCChHHH
Q 044025 33 VANIILLLVHLLQHAELEIK 52 (129)
Q Consensus 33 ~~g~lp~L~~ll~~~~~~v~ 52 (129)
+.+++|...+-|++.|-.+|
T Consensus 1 e~~IVpyi~~~L~N~~LAl~ 20 (24)
T PF09268_consen 1 EENIVPYILNTLQNPDLALR 20 (24)
T ss_dssp TTTHHHHHHHTT--HHHHHH
T ss_pred CccchhHHHhccCCHHHHHH
Confidence 35678888887777665544
No 255
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=20.86 E-value=2.5e+02 Score=25.59 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=41.6
Q ss_pred HHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 39 LLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 39 ~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.....|++..+++| .|+=.++.++.--...+-..++ ..|++ |.+-|...+|++.-.+|.|+..|
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI 868 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAI 868 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHH
Confidence 34445667788888 8888887776321111112233 45654 67777888999999888888765
No 256
>PF11486 DUF3212: Protein of unknown function (DUF3212); InterPro: IPR021579 Members in this family of proteins are annotated as YfmB however currently no function for this protein is known. ; PDB: 2EUC_B.
Probab=20.42 E-value=1.2e+02 Score=20.44 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=13.4
Q ss_pred ChHHHHHHHHHHHhhHh
Q 044025 11 PLSKLKENTLDSNIVVC 27 (129)
Q Consensus 11 ~~~~~r~~w~lsNI~~q 27 (129)
|+..+.++|.+|.+..|
T Consensus 5 speqq~nawvvsdlvkq 21 (120)
T PF11486_consen 5 SPEQQYNAWVVSDLVKQ 21 (120)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred CHHHHcchHHHHHHHHH
Confidence 56788899999999763
No 257
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.12 E-value=6e+02 Score=25.04 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=53.3
Q ss_pred hccHHHHHHHhccCChHHHHHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHH
Q 044025 34 ANIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVY 113 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~ 113 (129)
..++|+|.+.=.+++..||.|---|=|.....+..-+. .-=..+++-|..-|++..-+++..+.-|+..+.++...+.+
T Consensus 997 ~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd-~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 997 KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVD-EYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 57889999888888888885555555555442211111 11134666666767777788888888888777555555555
Q ss_pred HHHHH
Q 044025 114 TQMIN 118 (129)
Q Consensus 114 ~~~i~ 118 (129)
.+.+.
T Consensus 1076 ~e~lp 1080 (1702)
T KOG0915|consen 1076 KEKLP 1080 (1702)
T ss_pred HHHHH
Confidence 55443
Done!