Query 044025
Match_columns 129
No_of_seqs 117 out of 1029
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:40:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 99.9 1.6E-23 5.5E-28 169.8 11.9 119 11-129 349-476 (529)
2 3ul1_B Importin subunit alpha- 99.9 3.4E-23 1.2E-27 167.5 12.3 125 5-129 324-457 (510)
3 4b8j_A Importin subunit alpha- 99.8 2.3E-18 7.9E-23 138.3 9.2 120 10-129 342-475 (528)
4 3ul1_B Importin subunit alpha- 99.7 5.9E-18 2E-22 136.8 10.7 122 3-127 63-191 (510)
5 4db6_A Armadillo repeat protei 99.7 3.1E-17 1.1E-21 117.0 12.0 122 4-128 61-187 (210)
6 1xqr_A HSPBP1 protein; armadil 99.7 3.7E-18 1.3E-22 130.8 7.3 101 5-106 132-238 (296)
7 1wa5_B Importin alpha subunit; 99.7 8.5E-18 2.9E-22 135.4 9.0 125 5-129 349-489 (530)
8 2jdq_A Importin alpha-1 subuni 99.7 6.2E-18 2.1E-22 131.9 7.8 124 6-129 285-422 (450)
9 1xm9_A Plakophilin 1; armadill 99.7 1.1E-17 3.7E-22 133.8 8.7 108 17-129 304-427 (457)
10 1xqr_A HSPBP1 protein; armadil 99.7 2.3E-17 7.9E-22 126.3 9.6 121 5-128 90-216 (296)
11 4db6_A Armadillo repeat protei 99.7 1.5E-16 5.1E-21 113.4 12.6 120 5-127 20-144 (210)
12 4db8_A Armadillo-repeat protei 99.7 4.8E-16 1.7E-20 113.4 13.9 123 4-129 103-230 (252)
13 3tpo_A Importin subunit alpha- 99.7 2.3E-16 8E-21 127.7 11.4 121 5-128 84-211 (529)
14 3now_A UNC-45 protein, SD10334 99.6 4.5E-16 1.6E-20 132.6 10.0 113 14-129 639-758 (810)
15 4db8_A Armadillo-repeat protei 99.6 5.8E-15 2E-19 107.6 12.6 122 4-128 61-187 (252)
16 3nmz_A APC variant protein; pr 99.6 1.8E-15 6.2E-20 121.9 10.4 99 14-114 351-457 (458)
17 3tt9_A Plakophilin-2; cell adh 99.6 6E-15 2.1E-19 109.7 12.4 120 3-127 14-141 (233)
18 4hxt_A De novo protein OR329; 99.6 7.5E-15 2.6E-19 106.2 12.2 121 5-128 94-219 (252)
19 1jdh_A Beta-catenin; beta-cate 99.6 2.3E-15 7.9E-20 119.7 9.7 122 5-129 363-509 (529)
20 3nmw_A APC variant protein; AR 99.6 4.6E-15 1.6E-19 116.0 10.9 99 14-114 235-341 (354)
21 4b8j_A Importin subunit alpha- 99.6 3.8E-15 1.3E-19 119.5 10.3 122 5-128 294-421 (528)
22 4hxt_A De novo protein OR329; 99.6 1.8E-14 6E-19 104.2 12.1 121 4-127 9-134 (252)
23 1xm9_A Plakophilin 1; armadill 99.6 5.1E-15 1.8E-19 118.3 9.5 118 5-127 10-133 (457)
24 2z6h_A Catenin beta-1, beta-ca 99.6 7.6E-15 2.6E-19 121.1 8.9 122 5-129 360-506 (644)
25 1wa5_B Importin alpha subunit; 99.6 1.5E-14 5.2E-19 116.3 10.2 114 13-128 315-435 (530)
26 3now_A UNC-45 protein, SD10334 99.5 1.8E-14 6.2E-19 122.8 10.4 100 5-105 673-781 (810)
27 2jdq_A Importin alpha-1 subuni 99.5 8.3E-14 2.8E-18 108.5 9.7 115 11-127 248-367 (450)
28 3nmw_A APC variant protein; AR 99.5 2.6E-13 8.9E-18 106.0 10.4 117 11-129 184-313 (354)
29 3l6x_A Catenin delta-1; cateni 99.5 2.1E-13 7.1E-18 112.8 10.1 120 3-126 54-179 (584)
30 2z6g_A B-catenin; FULL-length, 99.5 1.5E-13 5.2E-18 116.2 9.1 122 5-129 496-642 (780)
31 3nmz_A APC variant protein; pr 99.5 4.6E-13 1.6E-17 107.9 11.3 118 10-129 299-429 (458)
32 3l6x_A Catenin delta-1; cateni 99.4 1.2E-12 4E-17 108.3 10.4 115 4-122 362-489 (584)
33 3tt9_A Plakophilin-2; cell adh 99.3 3.2E-12 1.1E-16 94.9 7.4 90 36-128 9-101 (233)
34 1jdh_A Beta-catenin; beta-cate 99.2 1.1E-10 3.9E-15 92.6 11.6 112 13-127 76-191 (529)
35 2z6h_A Catenin beta-1, beta-ca 99.2 1.1E-10 3.9E-15 96.1 9.6 114 11-127 70-188 (644)
36 2z6g_A B-catenin; FULL-length, 99.1 5.4E-10 1.9E-14 94.6 9.7 113 11-126 206-323 (780)
37 3opb_A SWI5-dependent HO expre 98.7 1.4E-08 4.9E-13 86.1 6.5 122 8-129 468-614 (778)
38 4gmo_A Putative uncharacterize 98.7 2.4E-08 8.2E-13 83.5 7.8 86 3-88 40-130 (684)
39 3opb_A SWI5-dependent HO expre 98.6 3.2E-08 1.1E-12 84.1 4.6 95 10-105 618-727 (778)
40 1te4_A Conserved protein MTH18 98.4 5.4E-07 1.9E-11 59.9 5.4 68 17-103 62-130 (131)
41 4gmo_A Putative uncharacterize 98.3 7.9E-07 2.7E-11 74.3 6.4 93 31-127 31-125 (684)
42 3grl_A General vesicular trans 98.2 8E-06 2.7E-10 68.2 10.5 109 17-129 142-262 (651)
43 3ltj_A Alpharep-4; protein eng 97.9 0.00011 3.6E-09 51.4 9.8 28 77-104 138-165 (201)
44 3ltm_A Alpha-REP4; protein eng 97.9 0.00012 4.2E-09 51.4 9.7 27 78-104 144-170 (211)
45 3ltm_A Alpha-REP4; protein eng 97.9 7.4E-05 2.5E-09 52.6 8.4 29 77-105 112-140 (211)
46 3ltj_A Alpharep-4; protein eng 97.8 8.4E-05 2.9E-09 51.9 8.2 28 78-105 108-135 (201)
47 1oyz_A Hypothetical protein YI 97.8 0.00011 3.8E-09 53.8 9.0 75 17-104 111-186 (280)
48 1oyz_A Hypothetical protein YI 97.8 0.0001 3.6E-09 54.0 8.6 76 13-105 144-220 (280)
49 4fdd_A Transportin-1; heat rep 97.7 9.9E-06 3.4E-10 68.3 2.5 98 6-105 409-511 (852)
50 4fdd_A Transportin-1; heat rep 97.7 1.7E-05 5.9E-10 66.8 3.3 87 17-105 379-470 (852)
51 1te4_A Conserved protein MTH18 97.7 8.5E-05 2.9E-09 49.1 5.6 57 37-105 44-101 (131)
52 1ibr_B P95, importin beta-1 su 97.6 0.00011 3.7E-09 56.7 6.7 89 15-106 345-437 (462)
53 2vgl_B AP-2 complex subunit be 97.5 0.00016 5.6E-09 59.1 6.8 81 19-106 108-189 (591)
54 3grl_A General vesicular trans 97.5 0.0008 2.7E-08 56.2 10.0 115 12-127 179-317 (651)
55 2vgl_B AP-2 complex subunit be 97.3 0.00022 7.6E-09 58.3 5.3 101 5-105 129-267 (591)
56 2qk1_A Protein STU2; STU2P, XM 97.3 0.00051 1.8E-08 50.6 6.8 101 20-120 127-234 (249)
57 1qgr_A Protein (importin beta 97.2 0.0023 7.9E-08 53.2 10.0 85 19-105 350-436 (876)
58 1b3u_A Protein (protein phosph 97.2 0.003 1E-07 50.0 10.0 83 18-104 501-585 (588)
59 1w63_A Adapter-related protein 97.2 0.0009 3.1E-08 55.1 7.0 87 10-105 120-207 (618)
60 2bpt_A Importin beta-1 subunit 97.0 0.0078 2.7E-07 49.9 11.0 86 19-105 353-439 (861)
61 1b3u_A Protein (protein phosph 96.9 0.0038 1.3E-07 49.5 8.4 83 19-106 463-548 (588)
62 1qgr_A Protein (importin beta 96.7 0.0015 5.3E-08 54.3 4.6 84 18-105 387-478 (876)
63 2qk2_A LP04448P; mini spindles 96.6 0.0036 1.2E-07 45.0 5.8 79 20-105 121-204 (242)
64 1ibr_B P95, importin beta-1 su 96.0 0.0052 1.8E-07 47.2 3.7 89 15-104 107-201 (462)
65 2bpt_A Importin beta-1 subunit 96.0 0.0051 1.8E-07 51.0 3.9 81 18-105 390-481 (861)
66 2qk2_A LP04448P; mini spindles 95.5 0.21 7.1E-06 35.5 10.4 77 19-104 79-160 (242)
67 2vgl_A Adaptor protein complex 94.8 0.039 1.3E-06 45.5 5.3 80 19-105 133-215 (621)
68 3b2a_A TON_1937, putative unch 94.6 0.33 1.1E-05 36.1 9.4 103 3-105 39-178 (265)
69 3b2a_A TON_1937, putative unch 94.5 0.05 1.7E-06 40.5 4.8 67 35-106 150-218 (265)
70 1wa5_C Importin alpha RE-expor 94.4 0.052 1.8E-06 46.5 5.4 54 10-63 471-525 (960)
71 1w63_A Adapter-related protein 93.7 0.61 2.1E-05 38.2 10.2 78 19-106 335-414 (618)
72 2db0_A 253AA long hypothetical 93.5 0.64 2.2E-05 33.7 8.8 76 20-104 164-244 (253)
73 4ady_A RPN2, 26S proteasome re 93.5 0.17 6E-06 44.1 6.8 63 35-105 611-675 (963)
74 3tjz_B Coatomer subunit gamma; 93.1 0.95 3.3E-05 35.0 9.9 83 13-105 118-204 (355)
75 1u6g_C TIP120 protein, CAND1; 92.8 0.17 6E-06 44.1 6.0 86 19-106 108-204 (1230)
76 2x19_B Importin-13; nuclear tr 92.3 0.33 1.1E-05 41.2 6.9 90 10-105 502-598 (963)
77 3dad_A FH1/FH2 domain-containi 92.3 0.61 2.1E-05 36.1 7.7 99 4-104 125-229 (339)
78 3m1i_C Exportin-1; heat repeat 92.3 0.65 2.2E-05 40.2 8.8 84 16-105 519-617 (1049)
79 1u6g_C TIP120 protein, CAND1; 91.2 0.55 1.9E-05 41.0 7.2 67 34-105 47-114 (1230)
80 4hat_C Exportin-1; heat repeat 91.0 0.47 1.6E-05 41.5 6.5 90 11-105 465-568 (1023)
81 2x1g_F Cadmus; transport prote 90.9 0.47 1.6E-05 40.4 6.5 89 10-105 519-614 (971)
82 2of3_A ZYG-9; multifunctional 90.5 0.78 2.7E-05 34.2 6.6 64 34-104 166-234 (266)
83 2db0_A 253AA long hypothetical 89.5 4.6 0.00016 29.2 11.4 72 34-106 106-210 (253)
84 4hat_C Exportin-1; heat repeat 89.0 1.9 6.5E-05 37.7 8.7 83 18-106 521-618 (1023)
85 2qk1_A Protein STU2; STU2P, XM 87.6 0.74 2.5E-05 33.4 4.6 69 35-105 60-132 (249)
86 1wa5_C Importin alpha RE-expor 86.4 1.8 6.1E-05 37.0 6.9 57 44-105 464-524 (960)
87 1ho8_A Vacuolar ATP synthase s 86.1 1 3.5E-05 36.4 4.9 68 35-104 395-474 (480)
88 3dad_A FH1/FH2 domain-containi 85.2 3 0.0001 32.2 7.0 64 40-104 123-187 (339)
89 2vgl_A Adaptor protein complex 84.5 4.2 0.00014 33.3 8.1 87 9-105 85-176 (621)
90 3tjz_B Coatomer subunit gamma; 80.5 7.9 0.00027 29.8 7.8 61 36-104 105-166 (355)
91 3m1i_C Exportin-1; heat repeat 78.8 5.8 0.0002 34.2 7.2 90 13-105 467-568 (1049)
92 3gjx_A Exportin-1; transport, 78.2 5 0.00017 35.4 6.6 92 8-104 488-593 (1073)
93 1ho8_A Vacuolar ATP synthase s 72.5 5.6 0.00019 32.1 5.1 77 49-127 242-325 (480)
94 4ffb_C Protein STU2; tubulin f 71.5 5.1 0.00018 28.9 4.4 66 38-104 142-210 (278)
95 2f31_A Diaphanous protein homo 68.3 29 0.00099 24.6 8.9 88 14-104 21-123 (233)
96 3c2g_A SYS-1 protein; beta-cat 67.7 21 0.00072 28.4 7.2 69 34-104 323-408 (619)
97 4ady_A RPN2, 26S proteasome re 66.8 12 0.00041 32.8 6.2 77 17-103 632-718 (963)
98 2iw3_A Elongation factor 3A; a 66.3 35 0.0012 30.0 9.0 81 20-104 118-202 (986)
99 3u0r_A Apoptosis inhibitor 5; 65.4 18 0.0006 29.4 6.6 60 35-102 65-125 (507)
100 3jxy_A Alkylpurine DNA glycosy 64.5 14 0.00048 26.3 5.5 42 35-77 166-208 (232)
101 2r17_C Vacuolar protein sortin 62.8 5.8 0.0002 30.0 3.2 40 34-73 6-46 (298)
102 2b6c_A Hypothetical protein EF 62.1 15 0.00053 25.9 5.2 45 36-81 160-205 (220)
103 1upk_A MO25 protein; transfera 60.4 54 0.0018 25.2 8.2 63 28-90 71-138 (341)
104 2x19_B Importin-13; nuclear tr 58.9 39 0.0013 28.4 7.9 54 45-104 459-516 (963)
105 3oc3_A Helicase MOT1, MOT1; re 58.7 14 0.00048 31.2 4.9 71 34-104 298-402 (800)
106 3l9t_A Putative uncharacterize 58.2 14 0.00047 27.1 4.4 39 36-75 179-218 (240)
107 3eg5_B Protein diaphanous homo 54.3 72 0.0025 24.5 10.8 74 28-104 103-189 (383)
108 2iw3_A Elongation factor 3A; a 54.3 60 0.0021 28.5 8.4 70 34-104 250-322 (986)
109 1x5b_A Signal transducing adap 53.4 30 0.001 23.4 5.3 68 35-103 52-122 (163)
110 3ldz_A STAM-1, signal transduc 53.1 19 0.00066 23.7 4.2 69 35-104 42-112 (140)
111 2fv2_A RCD1 required for cell 51.8 71 0.0024 23.7 11.3 76 27-104 137-222 (268)
112 3o2t_A Symplekin; heat repeat, 51.7 38 0.0013 26.4 6.2 72 27-104 48-127 (386)
113 2fv2_A RCD1 required for cell 50.7 54 0.0018 24.4 6.6 74 31-104 93-172 (268)
114 1t06_A Hypothetical protein; s 50.3 33 0.0011 24.5 5.4 41 34-75 150-191 (235)
115 1mhq_A ADP-ribosylation factor 49.5 55 0.0019 21.7 6.3 70 34-104 37-114 (148)
116 1juq_A ADP-ribosylation factor 48.8 45 0.0015 22.7 5.7 69 35-104 50-126 (171)
117 3gs3_A Symplekin, LD45768P; he 48.0 43 0.0015 24.5 5.7 72 27-104 38-117 (257)
118 2bnx_A Diaphanous protein homo 46.5 97 0.0033 23.8 9.0 87 15-104 26-127 (386)
119 1upk_A MO25 protein; transfera 42.3 1.1E+02 0.0039 23.4 8.3 75 29-104 158-236 (341)
120 1lrv_A LRV, leucine-rich repea 41.1 45 0.0015 24.0 4.9 57 44-101 59-122 (244)
121 3g2s_A C-terminal fragment of 41.1 58 0.002 21.7 5.1 69 35-104 48-124 (149)
122 3ibv_A Exportin-T; karyopherin 40.3 22 0.00075 30.9 3.5 64 36-104 491-564 (980)
123 4ffb_C Protein STU2; tubulin f 37.6 1.1E+02 0.0036 21.7 9.3 64 34-104 101-166 (278)
124 2x1g_F Cadmus; transport prote 35.4 1.4E+02 0.0049 25.1 7.8 65 36-105 460-534 (971)
125 1wy6_A Hypothetical protein ST 34.5 23 0.00077 24.3 2.2 76 28-103 14-103 (172)
126 2of3_A ZYG-9; multifunctional 33.5 99 0.0034 22.6 5.8 63 34-104 131-194 (266)
127 1lrv_A LRV, leucine-rich repea 30.0 57 0.0019 23.5 3.9 17 84-100 177-193 (244)
128 3ibv_A Exportin-T; karyopherin 29.8 21 0.00072 31.0 1.7 55 8-64 506-567 (980)
129 1vdy_A Hypothetical protein (R 28.3 1.3E+02 0.0045 19.9 5.5 51 34-84 48-100 (140)
130 3l9t_A Putative uncharacterize 28.0 74 0.0025 23.2 4.1 21 80-100 142-162 (240)
131 2l9j_A M2-1, matrix protein 2- 27.9 82 0.0028 20.2 3.8 42 34-75 18-60 (121)
132 3gjx_A Exportin-1; transport, 27.0 3.3E+02 0.011 24.0 9.5 66 36-103 478-552 (1073)
133 1lsh_A Lipovitellin (LV-1N, LV 25.9 91 0.0031 27.3 5.0 16 49-64 492-508 (1056)
134 3ebb_A Phospholipase A2-activa 25.5 2.1E+02 0.007 21.2 12.0 106 13-125 164-280 (304)
135 1v54_M VIIIB, IX, cytochrome C 24.8 26 0.0009 18.9 0.9 10 53-62 29-38 (46)
136 1sz9_A PCF11 protein; RNA poly 23.5 1.6E+02 0.0055 19.2 7.0 78 17-101 31-109 (144)
137 1lsh_A Lipovitellin (LV-1N, LV 21.8 3.1E+02 0.011 23.9 7.6 87 14-105 411-506 (1056)
138 2euc_A Hypothetical protein YF 21.7 72 0.0025 20.6 2.7 16 11-26 5-20 (130)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.90 E-value=1.6e-23 Score=169.75 Aligned_cols=119 Identities=34% Similarity=0.511 Sum_probs=108.3
Q ss_pred ChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025 11 PLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL 85 (129)
Q Consensus 11 ~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l 85 (129)
+.....++|+|+||++ +++.++++|++|.|+.++.++++++| +|+|||+|++.+++++++.++++.|++++|+++
T Consensus 349 ~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~L 428 (529)
T 3tpo_A 349 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 428 (529)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHH
Confidence 3344446699999998 78889999999999999999999999 999999999999899999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhccc----CCCChHHHHHHHhccchhhhcCC
Q 044025 86 LVCSDQRIVTVCLNGNRKLGM----DNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 86 L~~~d~~~~~~aL~al~ni~~----~~~~~~~~~~i~e~ggl~~le~L 129 (129)
|.++|++++..+|++|.|+.+ .+..+.++.+|+||||+++||.|
T Consensus 429 L~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L 476 (529)
T 3tpo_A 429 LSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 476 (529)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH
Confidence 999999999999999999842 44678999999999999999976
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.89 E-value=3.4e-23 Score=167.49 Aligned_cols=125 Identities=33% Similarity=0.478 Sum_probs=110.5
Q ss_pred ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI 79 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i 79 (129)
.++...+.....++|+++||++ +++.++++|++|.|+.+++++++++| +|+|||+|++.+++++++.++++.|++
T Consensus 324 LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i 403 (510)
T 3ul1_B 324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII 403 (510)
T ss_dssp CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCH
Confidence 3433333344445699999998 78889999999999999999999999 999999999999899999999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhhccc----CCCChHHHHHHHhccchhhhcCC
Q 044025 80 KPLCDLLVCSDQRIVTVCLNGNRKLGM----DNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 80 ~~l~~lL~~~d~~~~~~aL~al~ni~~----~~~~~~~~~~i~e~ggl~~le~L 129 (129)
++|+++|.++|++++..+|++|.|+.+ .+..++++.+|+++||+++||.|
T Consensus 404 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L 457 (510)
T 3ul1_B 404 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 457 (510)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999999999999843 45678999999999999999875
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.75 E-value=2.3e-18 Score=138.28 Aligned_cols=120 Identities=56% Similarity=0.807 Sum_probs=106.0
Q ss_pred CChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh
Q 044025 10 LPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD 84 (129)
Q Consensus 10 ~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~ 84 (129)
.+.....++|+|+|+++ +++.+++.|++|.|+++|.++++++| +|+|+|+|++.++++++..++++.|++++|++
T Consensus 342 ~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~ 421 (528)
T 4b8j_A 342 KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD 421 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence 33444456699999997 78889999999999999999999999 99999999999888899999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHhhcccCC---------CChHHHHHHHhccchhhhcCC
Q 044025 85 LLVCSDQRIVTVCLNGNRKLGMDN---------RVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 85 lL~~~d~~~~~~aL~al~ni~~~~---------~~~~~~~~i~e~ggl~~le~L 129 (129)
+|...|++++..++++|.++.+.. ..++|+..++++||+++|+.|
T Consensus 422 lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L 475 (528)
T 4b8j_A 422 LLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL 475 (528)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH
Confidence 999999999999999999984321 356799999999999998764
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.75 E-value=5.9e-18 Score=136.79 Aligned_cols=122 Identities=17% Similarity=0.276 Sum_probs=103.7
Q ss_pred ccccCCCCChHHHHHHHHHHHhhH-----hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025 3 IQQKNPKLPLSKLKENTLDSNIVV-----CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVS 75 (129)
Q Consensus 3 i~~~~~~~~~~~~r~~w~lsNI~~-----qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~ 75 (129)
+..++.+++...++++..+..+.. +|+.++++|++|+|+++|++. ++++| +|+|||+|++.+ ++++.+.+++
T Consensus 63 v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-~~e~~~~vv~ 141 (510)
T 3ul1_B 63 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-TSEQTKAVVD 141 (510)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 344556666666666656666544 799999999999999999865 68999 999999999987 7789999999
Q ss_pred cCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 76 QGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 76 ~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
.|++|+|+.+|.++++.++..++++|+|++. +....++.+.++|+++.+-
T Consensus 142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~--d~~~~r~~v~~~G~i~~Ll 191 (510)
T 3ul1_B 142 GGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLL 191 (510)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHcCChHHHH
Confidence 9999999999999999999999999999963 5678889999999998764
No 5
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.74 E-value=3.1e-17 Score=116.95 Aligned_cols=122 Identities=27% Similarity=0.307 Sum_probs=104.2
Q ss_pred cccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025 4 QQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY 78 (129)
Q Consensus 4 ~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~ 78 (129)
..++.+.+.....++|+++|++. ..+.+++.|.+|.|+.+|+++++++| +|+|+|+|++.+ ++++.+.+++.|+
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~ 139 (210)
T 4db6_A 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGA 139 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCc
Confidence 34444444445456689999996 66778899999999999999999999 999999999986 6678888999999
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
+|+|+++|.+++++++..++++|.|+.. ..++....+.+.|+++.|..
T Consensus 140 i~~L~~ll~~~~~~v~~~a~~aL~~l~~--~~~~~~~~~~~~g~i~~L~~ 187 (210)
T 4db6_A 140 LPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQ 187 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCcHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999964 45777888999999988764
No 6
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.73 E-value=3.7e-18 Score=130.76 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=88.6
Q ss_pred ccCCCCChHHHHH-HHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025 5 QKNPKLPLSKLKE-NTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY 78 (129)
Q Consensus 5 ~~~~~~~~~~~r~-~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~ 78 (129)
.++++.+....++ +|+|||+++ +.+.++++|.+|.|+.+|+++++++| +|+|+|+|++.+ ++++++++++.|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCC
Confidence 3443334455554 599999998 57788899999999999999999999 999999999998 6688999999999
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHhhccc
Q 044025 79 IKPLCDLLVCSDQRIVTVCLNGNRKLGM 106 (129)
Q Consensus 79 i~~l~~lL~~~d~~~~~~aL~al~ni~~ 106 (129)
+|+|+.+|.++|++++..++++|+|+.+
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999964
No 7
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.73 E-value=8.5e-18 Score=135.35 Aligned_cols=125 Identities=40% Similarity=0.509 Sum_probs=107.0
Q ss_pred ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCH--HHHHHHHhcC
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSH--EHIQFLVSQG 77 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~--~~i~~lv~~g 77 (129)
.+....+.....++|+|+|+++ +++.+++.|++|.|+.+|.++++++| +|+|+|+|++.++++ ++.+++++.|
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 3433333444456699999997 78888999999999999999999999 999999999998777 8899999999
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHhhcccC---------CCChHHHHHHHhccchhhhcCC
Q 044025 78 YIKPLCDLLVCSDQRIVTVCLNGNRKLGMD---------NRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~~~---------~~~~~~~~~i~e~ggl~~le~L 129 (129)
++|+|+.+|...|++++..++++|.++... ...++++..++++||+++|+.|
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L 489 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC 489 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGG
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHH
Confidence 999999999999999999999999988431 1346789999999999999865
No 8
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.73 E-value=6.2e-18 Score=131.94 Aligned_cols=124 Identities=45% Similarity=0.597 Sum_probs=105.4
Q ss_pred cCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025 6 KNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIK 80 (129)
Q Consensus 6 ~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~ 80 (129)
++...+.....++|+++|+++ +++.+++.|++|.++++|.++++++| +|+|+++|++.++++++.+++++.|++|
T Consensus 285 l~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 285 LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 433333344445689999996 77888899999999999999999999 9999999999887888999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhcccCC---------CChHHHHHHHhccchhhhcCC
Q 044025 81 PLCDLLVCSDQRIVTVCLNGNRKLGMDN---------RVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 81 ~l~~lL~~~d~~~~~~aL~al~ni~~~~---------~~~~~~~~i~e~ggl~~le~L 129 (129)
+|+++|...+++++..++++|.++.... ..++|+..+.++||+++|+.|
T Consensus 365 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l 422 (450)
T 2jdq_A 365 PLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFL 422 (450)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999999874311 235789999999999998753
No 9
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.72 E-value=1.1e-17 Score=133.82 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=93.8
Q ss_pred HHHHHHHhhH-------hH-HHHH-hhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhc
Q 044025 17 ENTLDSNIVV-------CM-YTVI-VANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86 (129)
Q Consensus 17 ~~w~lsNI~~-------qi-q~vi-~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL 86 (129)
++|+|+|+|+ ++ |.++ ++|++|.|+++|.++++++| +|+|+|+|++.+ ++.++++..|++|+|+++|
T Consensus 304 a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL 380 (457)
T 1xm9_A 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLL 380 (457)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhc
Confidence 4699999997 24 5566 58999999999999999999 999999999986 5678899889999999999
Q ss_pred CCCCH------HHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025 87 VCSDQ------RIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 87 ~~~d~------~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L 129 (129)
...++ +++..++++++|+.. ++++++..+.++||+++|..|
T Consensus 381 ~~~~~~~~~~~~v~~~~l~~l~ni~~--~~~~~~~~i~~~g~l~~L~~L 427 (457)
T 1xm9_A 381 TSHTGNTSNSEDILSSACYTVRNLMA--SQPQLAKQYFSSSMLNNIINL 427 (457)
T ss_dssp TSCCSCSTTHHHHHHHHHHHHHHHHT--TCTHHHHHHCCHHHHHHHHHH
T ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHh--cCHHHHHHHHHcCCHHHHHHH
Confidence 88653 688899999999953 577899999999999998754
No 10
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.72 E-value=2.3e-17 Score=126.32 Aligned_cols=121 Identities=10% Similarity=-0.017 Sum_probs=103.0
Q ss_pred ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGY 78 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~ 78 (129)
+++...+.....++|+|+||+. .-+.+++.|++|+|+.+|+++ +..+| +|+|||+|++.+ ++.+.+.+++.|.
T Consensus 90 lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~-~~~~~~~~~~~gg 168 (296)
T 1xqr_A 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDG 168 (296)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCC
Confidence 5655455556667899999997 456678999999999999964 88999 999999999987 6677778889999
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
+|+|..+|.++|+++...++|+|+++.. ++++..+.+.+.|+++.|-.
T Consensus 169 i~~L~~lL~~~d~~v~~~A~~aLs~L~~--~~~~~~~~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLV--GHPEHKGTLCSMGMVQQLVA 216 (296)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHh--CChHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999964 36778889999999987743
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.71 E-value=1.5e-16 Score=113.38 Aligned_cols=120 Identities=25% Similarity=0.272 Sum_probs=102.6
Q ss_pred ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI 79 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i 79 (129)
.++.+++.....++|+|+|++. ..+.+++.|++|.|+++|+++++++| .|+|+|+|++.+ +++..+.+++.|++
T Consensus 20 LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i 98 (210)
T 4db6_A 20 QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGAL 98 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCH
Confidence 3444445555556799999996 66788899999999999999999999 999999999987 55777888999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 80 KPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 80 ~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
|.|+.+|.+.++.++..++++|+|+.. +.+.....+.+.|+++.+-
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~ 144 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALV 144 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHc--CCHHHHHHHHHcCcHHHHH
Confidence 999999999999999999999999963 5667777888999998764
No 12
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.70 E-value=4.8e-16 Score=113.37 Aligned_cols=123 Identities=28% Similarity=0.316 Sum_probs=103.9
Q ss_pred cccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025 4 QQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY 78 (129)
Q Consensus 4 ~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~ 78 (129)
..++.+++......+|+|+|++. ..+.+++.|++|.|+++|+++++++| +|+|+++|++.+ +++..+.+++.|+
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~ 181 (252)
T 4db8_A 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGA 181 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCC
Confidence 34444444444445689999999 34678899999999999999999999 999999999987 5577888899999
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025 79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L 129 (129)
+|.|+.+|.++++.++..++++|+|+.. +.+.....+.+.|+++.+..+
T Consensus 182 i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~l 230 (252)
T 4db8_A 182 LPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQL 230 (252)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHH
Confidence 9999999999999999999999999963 567778889999999988653
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.68 E-value=2.3e-16 Score=127.69 Aligned_cols=121 Identities=17% Similarity=0.261 Sum_probs=100.3
Q ss_pred ccCCCCChHHHHHHHHHHHhhH-----hHHHHHhhccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV-----CMYTVIVANIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVSQG 77 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~-----qiq~vi~~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g 77 (129)
.++++++...+.++-.+.++.. .++.++++|++|.|+++|+. .++++| +|+|+|+|++.+ ++++.+.+++.|
T Consensus 84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~-~~~~~~~vv~~G 162 (529)
T 3tpo_A 84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-TSEQTKAVVDGG 162 (529)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTT
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCC
Confidence 3444444444444445555443 79999999999999999975 468999 999999999998 668888999999
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 78 YIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
++|+|+.+|.++++.+...++++|+|++. +....+..+.++|+++.+-.
T Consensus 163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~--~~~~~r~~i~~~g~i~~Ll~ 211 (529)
T 3tpo_A 163 AIPAFISLLASPHAHISEQAVWALGNIAG--AGSAFRDLVIKHGAIDPLLA 211 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhc--cCHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999999999999963 56788999999999987643
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.65 E-value=4.5e-16 Score=132.58 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=99.0
Q ss_pred HHHH-HHHHHHhhH---hHHHHHh-hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh-cCChHHHHhhc
Q 044025 14 KLKE-NTLDSNIVV---CMYTVIV-ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS-QGYIKPLCDLL 86 (129)
Q Consensus 14 ~~r~-~w~lsNI~~---qiq~vi~-~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~i~~l~~lL 86 (129)
..++ +|+++|++. ....+++ +|.+|.|+.++++.+.++| +|+|+|+|++.+ ++++++++++ .|.+|+|+.+|
T Consensus 639 Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL 717 (810)
T 3now_A 639 LTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLI 717 (810)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHH
Confidence 3444 579999998 3333444 7999999999999999999 999999999997 6689999998 89999999999
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025 87 VCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 87 ~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L 129 (129)
.++|.+++..+++++.|+.. ++++++..+.++|+++.|..|
T Consensus 718 ~s~d~~vq~~A~~aL~NL~~--~s~e~~~~l~e~G~i~~L~~L 758 (810)
T 3now_A 718 ANPSPAVQHRGIVIILNMIN--AGEEIAKKLFETDIMELLSGL 758 (810)
T ss_dssp TCSSHHHHHHHHHHHHHHHT--TCHHHHHHHHTSTHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999964 467889999999999998765
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.63 E-value=5.8e-15 Score=107.63 Aligned_cols=122 Identities=25% Similarity=0.259 Sum_probs=101.7
Q ss_pred cccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025 4 QQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY 78 (129)
Q Consensus 4 ~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~ 78 (129)
..+....+.....++|+|+|++. ..+.+++.|++|.|+.+|+++++++| .|+|+|+|++.+ .+.+...+++.|+
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~ 139 (252)
T 4db8_A 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGA 139 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CchHHHHHHHCCC
Confidence 34444444444456689999997 56777899999999999999999999 999999999987 4455578899999
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
+|.|+.+|.++++.++..++++|+|+.. +.+.....+.+.|+++.+..
T Consensus 140 i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ 187 (252)
T 4db8_A 140 LPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQ 187 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999963 46677788888999987753
No 16
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=121.94 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhh----H---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025 14 KLKENTLDSNIV----V---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL 85 (129)
Q Consensus 14 ~~r~~w~lsNI~----~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l 85 (129)
...++|+|+|++ . +.+.++++|++|.|+++|++++++++ +|+|+|+|++.+ ++++.+++++.|++|+|+++
T Consensus 351 ~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~L 429 (458)
T 3nmz_A 351 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNL 429 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence 334569999998 2 77888899999999999999999999 999999999986 67889999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhcccCCCChHHH
Q 044025 86 LVCSDQRIVTVCLNGNRKLGMDNRVNVYT 114 (129)
Q Consensus 86 L~~~d~~~~~~aL~al~ni~~~~~~~~~~ 114 (129)
|.+.++++...++++|.|+... ...+|.
T Consensus 430 L~s~~~~v~~~Aa~AL~nL~~~-~p~ky~ 457 (458)
T 3nmz_A 430 IHSKHKMIAMGSAAALRNLMAN-RPAKYK 457 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTC-CSCC--
T ss_pred HhCCCHHHHHHHHHHHHHHHcC-CHhhhc
Confidence 9999999999999999999743 344443
No 17
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.62 E-value=6e-15 Score=109.66 Aligned_cols=120 Identities=11% Similarity=0.040 Sum_probs=93.2
Q ss_pred ccccCCCCC--hHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025 3 IQQKNPKLP--LSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS 75 (129)
Q Consensus 3 i~~~~~~~~--~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~ 75 (129)
+..+..+++ ..+..++|++.|++. ..+.++++|.+|+|+++|++++.++| +|+|+|.|++.+ +++....+++
T Consensus 14 V~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~-~~~nk~~I~~ 92 (233)
T 3tt9_A 14 VSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE-DNDNKLEVAE 92 (233)
T ss_dssp HHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHH
Confidence 345554444 344456689999997 56678899999999999999999999 999999999986 5577788899
Q ss_pred cCChHHHHhhcC-CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 76 QGYIKPLCDLLV-CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 76 ~g~i~~l~~lL~-~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
.|+||+|+.+|. +.+..+...+..+|.|+.. .+.....+.+ +|++.|-
T Consensus 93 ~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~---~~~~k~~i~~-~~i~~Lv 141 (233)
T 3tt9_A 93 LNGVPRLLQVLKQTRDLETKKQITGLLWNLSS---NDKLKNLMIT-EALLTLT 141 (233)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT---SGGGHHHHHH-HHHHHHC
T ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc---ChhhHHHHHh-ccHHHHH
Confidence 999999999997 5789999999988888853 2233334444 3565553
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.61 E-value=7.5e-15 Score=106.16 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=102.0
Q ss_pred ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI 79 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i 79 (129)
.++.+++......+|+++|++. ..+.+++.|.+|.++++++++++++| .|+|+++|++.+ +++..+.+++.|++
T Consensus 94 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i 172 (252)
T 4hxt_A 94 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGV 172 (252)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCH
Confidence 3443334444445689999995 56667789999999999999999999 999999999987 55777889999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 80 KPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 80 ~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
|.|+++|.++++.+...++++|.++.. +.......+.+.|+++.+..
T Consensus 173 ~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ 219 (252)
T 4hxt_A 173 EVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQK 219 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999963 57777888999999988754
No 19
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.61 E-value=2.3e-15 Score=119.67 Aligned_cols=122 Identities=17% Similarity=0.109 Sum_probs=93.3
Q ss_pred ccCCCCChHHHH-HHHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHH--hccCCCHHHH-------
Q 044025 5 QKNPKLPLSKLK-ENTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISS--ATYGGSHEHI------- 70 (129)
Q Consensus 5 ~~~~~~~~~~~r-~~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~N--i~~~~~~~~i------- 70 (129)
.+..+.+....+ .+|+++|++. ..+.+++.|++|.|+++|+++++++| +|+|+++| ++.+++++++
T Consensus 363 lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~a 442 (529)
T 1jdh_A 363 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442 (529)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHH
T ss_pred HhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHH
Confidence 344444333444 4599999998 34677899999999999999999999 99999999 7777666654
Q ss_pred -----------HHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025 71 -----------QFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 71 -----------~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L 129 (129)
..+.+.|++++|+.++.+.++.++..+.+++.++. .+++++..+.++||+++|+.|
T Consensus 443 l~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~---~~~~~~~~i~~~~~~~~L~~l 509 (529)
T 1jdh_A 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA---QDKEAAEAIEAEGATAPLTEL 509 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT---TSHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh---cCHHHHHHHHHcCChHHHHHH
Confidence 34778999999999999999999999999999985 357889999999999998764
No 20
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.60 E-value=4.6e-15 Score=115.99 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhH-------hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025 14 KLKENTLDSNIVV-------CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL 85 (129)
Q Consensus 14 ~~r~~w~lsNI~~-------qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l 85 (129)
...++|+|+|++. +.+.++++|.+|.|+++|++++.++| +|+|+|+|++.+ ++++.+.+++.|++|+|+++
T Consensus 235 ~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~L 313 (354)
T 3nmw_A 235 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNL 313 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHH
Confidence 3335689999982 67888899999999999999999999 999999999986 67888999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhcccCCCChHHH
Q 044025 86 LVCSDQRIVTVCLNGNRKLGMDNRVNVYT 114 (129)
Q Consensus 86 L~~~d~~~~~~aL~al~ni~~~~~~~~~~ 114 (129)
|.+.++++...++++|.|+... ..+.|.
T Consensus 314 L~s~~~~i~~~A~~aL~nL~~~-~~~~~~ 341 (354)
T 3nmw_A 314 IHSKHKMIAMGSAAALRNLMAN-RPAKYK 341 (354)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTT-CCGGGC
T ss_pred HhCCCHHHHHHHHHHHHHHHcC-CHHHHh
Confidence 9999999999999999999643 344444
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.60 E-value=3.8e-15 Score=119.55 Aligned_cols=122 Identities=21% Similarity=0.225 Sum_probs=103.6
Q ss_pred ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGY 78 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~ 78 (129)
.+....+.....++|+|+|++. +.+.+++.|++|.|+.+|.++ ++.+| +|+|+|+|++.+ ++++++.+++.|+
T Consensus 294 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~ 372 (528)
T 4b8j_A 294 LLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGI 372 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTC
T ss_pred HHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCC
Confidence 3444444444455689999998 778889999999999999999 99999 999999999986 6788999999999
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025 79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN 128 (129)
Q Consensus 79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~ 128 (129)
+|+|+.+|...++++...++++|+|+... ++......+.+.|+++.|..
T Consensus 373 i~~L~~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~i~~L~~ 421 (528)
T 4b8j_A 373 IGPLVNLLQTAEFDIKKEAAWAISNATSG-GSHDQIKYLVSEGCIKPLCD 421 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHH-SCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999642 35677778888999887754
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.59 E-value=1.8e-14 Score=104.20 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=103.0
Q ss_pred cccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025 4 QQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY 78 (129)
Q Consensus 4 ~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~ 78 (129)
..+..+++.....++|++.|++. ..+.+++.|++|.|+++|++++.++| .|+|+++|++.+ +++....+++.|+
T Consensus 9 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~ 87 (252)
T 4hxt_A 9 KLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGG 87 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCC
Confidence 34544444555566789999998 56777899999999999999999999 999999999987 4577778889999
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
+|.++.+|.++++.++..++++|+|+.. ..+.....+.+.|+++.+.
T Consensus 88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~ 134 (252)
T 4hxt_A 88 VEVLVKLLTSTDSEVQKEAARALANIAS--GPDEAIKAIVDAGGVEVLV 134 (252)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999963 5677788888999988764
No 23
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.58 E-value=5.1e-15 Score=118.30 Aligned_cols=118 Identities=14% Similarity=0.042 Sum_probs=99.1
Q ss_pred ccCCCCChHHHHHHHHHHHhhH---h-HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV---C-MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI 79 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~---q-iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i 79 (129)
.++.+++.....++|++.|++. . .+.++++|.+|.|+++|+++++++| +|+|+|.|++.+ +++....+++.|++
T Consensus 10 ~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i 88 (457)
T 1xm9_A 10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGI 88 (457)
T ss_dssp HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCH
T ss_pred HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCH
Confidence 3444455566677899999997 3 4488899999999999999999999 999999999996 56777778899999
Q ss_pred HHHHhhcC-CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 80 KPLCDLLV-CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 80 ~~l~~lL~-~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
|+|+.+|. +.++++...+.++|.|+... ++....+.+ |+++.|-
T Consensus 89 ~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~---~~~~~~i~~-g~i~~Lv 133 (457)
T 1xm9_A 89 REAVSLLRRTGNAEIQKQLTGLLWNLSST---DELKEELIA-DALPVLA 133 (457)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTS---SSTHHHHHH-HHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHhcC---HHhHHHHHh-ccHHHHH
Confidence 99999998 78999999999999999742 445666777 9988764
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.56 E-value=7.6e-15 Score=121.05 Aligned_cols=122 Identities=17% Similarity=0.103 Sum_probs=94.4
Q ss_pred ccCCCCChHHHH-HHHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHH--hccCCCHHHHH------
Q 044025 5 QKNPKLPLSKLK-ENTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISS--ATYGGSHEHIQ------ 71 (129)
Q Consensus 5 ~~~~~~~~~~~r-~~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~N--i~~~~~~~~i~------ 71 (129)
.+..+......+ .+|+++|+++ ..+.+++.|++|.|+++|.++++++| +|+|+++| ++.+++.+++.
T Consensus 360 lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~a 439 (644)
T 2z6h_A 360 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 439 (644)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHH
T ss_pred HhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHH
Confidence 444443333444 4589999998 33778899999999999999999999 99999999 88777777764
Q ss_pred ------------HHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025 72 ------------FLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 72 ------------~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L 129 (129)
.+.+.|++|+|+++|.+.++.++..+++++.++.. .++++..++++|++++|+.|
T Consensus 440 L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~---~~~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 440 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ---DKEAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT---SHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc---CHHHHHHHHHcCChhHHHHH
Confidence 56789999999999999999999999999999863 57889999999999988753
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.56 E-value=1.5e-14 Score=116.34 Aligned_cols=114 Identities=23% Similarity=0.253 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC
Q 044025 13 SKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV 87 (129)
Q Consensus 13 ~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~ 87 (129)
....++|+++|++. +.+.+++.|++|.|+.+|.++++.+| +|+|+|+|++.+ ++++++.+++.|++|+|+.+|.
T Consensus 315 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHh
Confidence 33345589999997 67888899999999999999999999 999999999987 6688899999999999999999
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCh--HHHHHHHhccchhhhcC
Q 044025 88 CSDQRIVTVCLNGNRKLGMDNRVN--VYTQMINECDGLDKIEN 128 (129)
Q Consensus 88 ~~d~~~~~~aL~al~ni~~~~~~~--~~~~~i~e~ggl~~le~ 128 (129)
..++.++..++++|+|+... +.. ++...+.+.|+++.|..
T Consensus 394 ~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~l~~~~~l~~L~~ 435 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASSG-GLQRPDIIRYLVSQGCIKPLCD 435 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHHH-TTTCTHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHCCCHHHHHH
Confidence 89999999999999999642 233 66777788999887753
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.55 E-value=1.8e-14 Score=122.79 Aligned_cols=100 Identities=11% Similarity=0.030 Sum_probs=86.5
Q ss_pred ccCCCCChHHHHHHHHHHHhhH----hHHHHHh-hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIV-ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY 78 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~-~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~ 78 (129)
.+..+.......++|+|+|+++ +++.+++ +|.+|+|+++|.++++++| +|+|+++|++.+ ++++.+++++.|+
T Consensus 673 LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~ 751 (810)
T 3now_A 673 LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDI 751 (810)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTH
T ss_pred HhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCC
Confidence 3444333344445699999998 7899998 9999999999999999999 999999999986 5689999999999
Q ss_pred hHHHHhhcCCC---CHHHHHHHHHHHhhcc
Q 044025 79 IKPLCDLLVCS---DQRIVTVCLNGNRKLG 105 (129)
Q Consensus 79 i~~l~~lL~~~---d~~~~~~aL~al~ni~ 105 (129)
+++|+++|..+ +++++..++++|+++.
T Consensus 752 i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 752 MELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 99999999765 7999999999999874
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.50 E-value=8.3e-14 Score=108.47 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025 11 PLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL 85 (129)
Q Consensus 11 ~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l 85 (129)
+......+|+++|++. +.+.+++.|++|.|+.+++++++.+| +|+|+|+|++.+ ++++.+.+++.|++|.|+.+
T Consensus 248 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~ 326 (450)
T 2jdq_A 248 YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG-NRAQIQTVIDANIFPALISI 326 (450)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence 3334445689999998 56778899999999999999999999 999999999987 66888889999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 86 LVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 86 L~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
|.+++++++..++++|+|+... ++.+....+.+.|+++.|.
T Consensus 327 l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~l~~~~~i~~L~ 367 (450)
T 2jdq_A 327 LQTAEFRTRKEAAWAITNATSG-GSAEQIKYLVELGCIKPLC 367 (450)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999632 2445566666888887764
No 28
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.47 E-value=2.6e-13 Score=106.01 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=94.6
Q ss_pred ChHHHHHH-HHHHHhhH---h-HHHHH-hhccHHHHHHHhccCCh----HHH-HHHHHHHHhcc--CCCHHHHHHHHhcC
Q 044025 11 PLSKLKEN-TLDSNIVV---C-MYTVI-VANIILLLVHLLQHAEL----EIK-EATWAISSATY--GGSHEHIQFLVSQG 77 (129)
Q Consensus 11 ~~~~~r~~-w~lsNI~~---q-iq~vi-~~g~lp~L~~ll~~~~~----~v~-eA~wal~Ni~~--~~~~~~i~~lv~~g 77 (129)
+...++.+ +++.|++. . -..+. ++|.+|.|+++|++++. +++ +|+|+|.|++. .+++++.+.+++.|
T Consensus 184 ~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g 263 (354)
T 3nmw_A 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 263 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC
Confidence 34444544 58888876 2 22333 79999999999998754 589 99999999996 12567788888999
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025 78 YIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L 129 (129)
++|+|+.+|.+.+.+++..++++|.|+.. ++.+..+.+.++|+++.|..|
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~i~~Lv~L 313 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNL 313 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHHHHHTTHHHHHHTT
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999953 578888999999999988654
No 29
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.47 E-value=2.1e-13 Score=112.81 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=95.0
Q ss_pred ccccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025 3 IQQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG 77 (129)
Q Consensus 3 i~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g 77 (129)
+..|...++.....++|+|.|+|. ..+.++++|.+|.|+++|++++.++| +|+|||.|++.+.+++....+++.|
T Consensus 54 V~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~G 133 (584)
T 3l6x_A 54 IAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCD 133 (584)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTT
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcC
Confidence 345555555555567799999997 67778899999999999999999999 9999999999864456777888999
Q ss_pred ChHHHHhhcCC-CCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025 78 YIKPLCDLLVC-SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKI 126 (129)
Q Consensus 78 ~i~~l~~lL~~-~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~l 126 (129)
+||+|+.+|.+ .+..+...+..+|.|+.. .++....+.+ ||++.|
T Consensus 134 aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~---~~~~k~~I~~-~alp~L 179 (584)
T 3l6x_A 134 GVPALVRLLRKARDMDLTEVITGTLWNLSS---HDSIKMEIVD-HALHAL 179 (584)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHTT---SGGGHHHHHH-HTHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CchhhHHHHh-ccHHHH
Confidence 99999999986 678899999999999864 2333444443 456554
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.46 E-value=1.5e-13 Score=116.24 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=94.4
Q ss_pred ccCCCCChHHH-HHHHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHH--hccCCCHHHHH------
Q 044025 5 QKNPKLPLSKL-KENTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISS--ATYGGSHEHIQ------ 71 (129)
Q Consensus 5 ~~~~~~~~~~~-r~~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~N--i~~~~~~~~i~------ 71 (129)
.+..+...... ..+|+|+|+++ ..+.+++.|++|.|+++|.++++++| +|+|+++| ++.++++++++
T Consensus 496 lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~a 575 (780)
T 2z6g_A 496 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGA 575 (780)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHH
Confidence 34444443333 45699999998 33567789999999999999999999 99999988 66666555543
Q ss_pred ------------HHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025 72 ------------FLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 72 ------------~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L 129 (129)
.+++.|++|+|+.+|.+.++.++..++.+|.++. .+++++..+.++||++.|.+|
T Consensus 576 L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~---~~~~~~~~i~~~g~i~~L~~L 642 (780)
T 2z6g_A 576 LHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA---QDKEAAEAIEAEGATAPLTEL 642 (780)
T ss_dssp HHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH---TSHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh---cCHHHHHHHHHCCCHHHHHHH
Confidence 3668999999999999999999999999999986 367889999999999998754
No 31
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.46 E-value=4.6e-13 Score=107.94 Aligned_cols=118 Identities=17% Similarity=0.119 Sum_probs=95.1
Q ss_pred CChHHHHHH-HHHHHhhH-----hHHHHHhhccHHHHHHHhccCCh----HHH-HHHHHHHHhcc--CCCHHHHHHHHhc
Q 044025 10 LPLSKLKEN-TLDSNIVV-----CMYTVIVANIILLLVHLLQHAEL----EIK-EATWAISSATY--GGSHEHIQFLVSQ 76 (129)
Q Consensus 10 ~~~~~~r~~-w~lsNI~~-----qiq~vi~~g~lp~L~~ll~~~~~----~v~-eA~wal~Ni~~--~~~~~~i~~lv~~ 76 (129)
.+...++.+ .++.|++. +.+.+.++|.+|.|+++|.+++. +++ +|+|+|.|++. .+++++.+.+++.
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence 344455544 47777776 23323379999999999998754 489 99999999996 1366788888999
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025 77 GYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 77 g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L 129 (129)
|++|+|+.+|.+.+.+++..++++|.|+.. ++.+....+.++|+++.|-.|
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~I~~Lv~L 429 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNL 429 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHS--SCHHHHHHHHHHTHHHHHHTT
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999963 477888999999999988654
No 32
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.40 E-value=1.2e-12 Score=108.32 Aligned_cols=115 Identities=11% Similarity=-0.066 Sum_probs=94.9
Q ss_pred cccCCCCChHHHHHHHHHHHhhH--hHHHHHhhccHHHHHHHhccC--------ChHHH-HHHHHHHHhccCCCHHHHHH
Q 044025 4 QQKNPKLPLSKLKENTLDSNIVV--CMYTVIVANIILLLVHLLQHA--------ELEIK-EATWAISSATYGGSHEHIQF 72 (129)
Q Consensus 4 ~~~~~~~~~~~~r~~w~lsNI~~--qiq~vi~~g~lp~L~~ll~~~--------~~~v~-eA~wal~Ni~~~~~~~~i~~ 72 (129)
..+...+......++|+|+|++. +.+.+|+.|.+|.|+++|.++ ..+++ .|||+|+|++++ ++++.+.
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~~ 440 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAKK 440 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 34444444444445689999999 788889999999999999987 36789 999999999987 7789999
Q ss_pred HHhcCChHHHHhhcCCC--CHHHHHHHHHHHhhcccCCCChHHHHHHHhccc
Q 044025 73 LVSQGYIKPLCDLLVCS--DQRIVTVCLNGNRKLGMDNRVNVYTQMINECDG 122 (129)
Q Consensus 73 lv~~g~i~~l~~lL~~~--d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~gg 122 (129)
+++.|+||+|+.+|.+. .+++.+.|.++|.|+.. ..+.+..+++.|.
T Consensus 441 I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~---~~elr~~~kk~G~ 489 (584)
T 3l6x_A 441 LRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG---YKELRKPLEKEGW 489 (584)
T ss_dssp HHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT---SHHHHHHHHTTTC
T ss_pred HHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc---CHHHHHHHHHcCC
Confidence 99999999999999875 78999999999999853 6677777777543
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.32 E-value=3.2e-12 Score=94.92 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=80.0
Q ss_pred cHHHHHHHhccCCh--HHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChH
Q 044025 36 IILLLVHLLQHAEL--EIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNV 112 (129)
Q Consensus 36 ~lp~L~~ll~~~~~--~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~ 112 (129)
-+|.++++|+++++ ++| +|+|++.|++.+ +++..+.+++.|+||+|+.+|.+++++++..+.++|.|+.. ++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~-~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~--~~~~ 85 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF--EDND 85 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC-CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CCHH
Confidence 58999999999988 999 999999999987 45666778899999999999999999999999999999963 4677
Q ss_pred HHHHHHhccchhhhcC
Q 044025 113 YTQMINECDGLDKIEN 128 (129)
Q Consensus 113 ~~~~i~e~ggl~~le~ 128 (129)
....|.++||++.|-.
T Consensus 86 nk~~I~~~GaI~~Lv~ 101 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQ 101 (233)
T ss_dssp HHHHHHHTTHHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 8889999999988743
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.22 E-value=1.1e-10 Score=92.55 Aligned_cols=112 Identities=11% Similarity=0.040 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025 13 SKLKENTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88 (129)
Q Consensus 13 ~~~r~~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~ 88 (129)
.....++++.|++. ..+.+++.|.+|.|+++|+++++++| +|+|++.|++.+. ++..+.+++.|++|+|+++|.+
T Consensus 76 ~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~ 154 (529)
T 1jdh_A 76 TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNK 154 (529)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhc
Confidence 33344579999988 56667789999999999999999999 9999999999873 3456677799999999999999
Q ss_pred CCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 89 SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 89 ~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
+++++...+..++.++.. ++++....+.+.|+++.+-
T Consensus 155 ~~~~~~~~~~~~L~~la~--~~~~~~~~i~~~~~i~~L~ 191 (529)
T 1jdh_A 155 TNVKFLAITTDCLQILAY--GNQESKLIILASGGPQALV 191 (529)
T ss_dssp CCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh--CCHHHHHHHHHCCCHHHHH
Confidence 999999999999999863 4677788888889887653
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=96.11 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=95.1
Q ss_pred ChHHHHH-HHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025 11 PLSKLKE-NTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL 85 (129)
Q Consensus 11 ~~~~~r~-~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l 85 (129)
+....+. +.+|.|++. ..+.+.+.|++|.|+++|+++++++| +|+|+|.|++.+. ++..+.+++.|++|.|+.+
T Consensus 70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHH
Confidence 3444444 469999988 56667789999999999999999999 9999999999873 3556677899999999999
Q ss_pred cCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025 86 LVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 86 L~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le 127 (129)
|.+.++++...++.+|.++.. +.++....+.+.|+++.|-
T Consensus 149 L~~~~~~~~~~a~~~L~~La~--~~~~~~~~i~~~g~v~~Lv 188 (644)
T 2z6h_A 149 LNKTNVKFLAITTDCLQILAY--GNQESKLIILASGGPQALV 188 (644)
T ss_dssp GGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHH
T ss_pred HCcCCHHHHHHHHHHHHHHHh--cCcHHHHHHHHcCChHHHH
Confidence 999899999989999999963 4677788888999987653
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.07 E-value=5.4e-10 Score=94.56 Aligned_cols=113 Identities=11% Similarity=0.072 Sum_probs=92.2
Q ss_pred ChHHHHH-HHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025 11 PLSKLKE-NTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL 85 (129)
Q Consensus 11 ~~~~~r~-~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l 85 (129)
+....+. +++|.|++. ..+.+.+.|++|.|+++|+++++.+| +|+|+|.|++.+. ++..+.+++.|++|.|+.+
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~l 284 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVAL 284 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHH
Confidence 3444444 579999987 55667789999999999999999999 9999999999873 3555667789999999999
Q ss_pred cCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025 86 LVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKI 126 (129)
Q Consensus 86 L~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~l 126 (129)
|..++.++...++.++.++.. +.++....+.+.|+++.|
T Consensus 285 L~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~i~~L 323 (780)
T 2z6g_A 285 LNKTNVKFLAITTDCLQILAY--GNQESKLIILASGGPQAL 323 (780)
T ss_dssp GGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCCHHHH
Confidence 999999999999999998853 356667777777887654
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.4e-08 Score=86.11 Aligned_cols=122 Identities=16% Similarity=0.015 Sum_probs=86.8
Q ss_pred CCCChHHHHHHHHHHHhhH---hHHHHHhhccHHHHHHHhccCChH---HH-HHHHHHHHhccCCCHHHHHHHHh-cCCh
Q 044025 8 PKLPLSKLKENTLDSNIVV---CMYTVIVANIILLLVHLLQHAELE---IK-EATWAISSATYGGSHEHIQFLVS-QGYI 79 (129)
Q Consensus 8 ~~~~~~~~r~~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~---v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~i 79 (129)
...+.+....+|++.|++. ....++..|++|.|+.++.++... .| .|++||+|++...+|+++-.--+ .|++
T Consensus 468 S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI 547 (778)
T 3opb_A 468 NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAI 547 (778)
T ss_dssp GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccch
Confidence 3344455556799999998 577788999999999999998654 89 99999999997767665310001 3899
Q ss_pred HHHHhhcCC-CCH-------------HHHHHHHHHHhhcccCCCC--hHHHHHHHh-ccchhhhcCC
Q 044025 80 KPLCDLLVC-SDQ-------------RIVTVCLNGNRKLGMDNRV--NVYTQMINE-CDGLDKIENL 129 (129)
Q Consensus 80 ~~l~~lL~~-~d~-------------~~~~~aL~al~ni~~~~~~--~~~~~~i~e-~ggl~~le~L 129 (129)
|||++||.. ++. .-.-.++.||.|++...++ ++.+..+.. +|++++|+.|
T Consensus 548 ~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L 614 (778)
T 3opb_A 548 PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614 (778)
T ss_dssp HHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred HHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence 999999972 221 1255799999999753222 355665566 5999998764
No 38
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.73 E-value=2.4e-08 Score=83.49 Aligned_cols=86 Identities=8% Similarity=0.096 Sum_probs=68.0
Q ss_pred ccccCCCCChHHHHHHHHHHHhhH---hHHHHHhhccHHHH-HHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025 3 IQQKNPKLPLSKLKENTLDSNIVV---CMYTVIVANIILLL-VHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG 77 (129)
Q Consensus 3 i~~~~~~~~~~~~r~~w~lsNI~~---qiq~vi~~g~lp~L-~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g 77 (129)
++.+...++.....++|+++||+. ..+.+...|+++.+ ..+|.+.+.++| +|+|++.|++..+.++-..++++.|
T Consensus 40 l~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~ 119 (684)
T 4gmo_A 40 LKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLD 119 (684)
T ss_dssp HHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcC
Confidence 344555556666678899999999 34445567777664 567899999999 9999999999776667788999999
Q ss_pred ChHHHHhhcCC
Q 044025 78 YIKPLCDLLVC 88 (129)
Q Consensus 78 ~i~~l~~lL~~ 88 (129)
++++|..+|..
T Consensus 120 il~~L~~~l~~ 130 (684)
T 4gmo_A 120 VLTAIEHAAKA 130 (684)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 99999998853
No 39
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.2e-08 Score=84.05 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=78.1
Q ss_pred CChHHHHHH-HHHHHhhH---hH-HHHHhhc------cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc-
Q 044025 10 LPLSKLKEN-TLDSNIVV---CM-YTVIVAN------IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ- 76 (129)
Q Consensus 10 ~~~~~~r~~-w~lsNI~~---qi-q~vi~~g------~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~- 76 (129)
+.....|++ |+++|++. .+ +.+++.+ -++.|+.+++.+|+++| .|+||++|++++ ++.-.+.+++.
T Consensus 618 ~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~~~ia~~ll~~~ 696 (778)
T 3opb_A 618 ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-IPLIAKELLTKK 696 (778)
T ss_dssp SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-CHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHcc
Confidence 344566666 59999998 44 5665432 38899999999999999 999999999875 54556788876
Q ss_pred CChHHHHhhcCC--CCHHHHHHHHHHHhhcc
Q 044025 77 GYIKPLCDLLVC--SDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 77 g~i~~l~~lL~~--~d~~~~~~aL~al~ni~ 105 (129)
+.++.++.+|.. +++.++..++.++.|+.
T Consensus 697 ~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 697 ELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 899999999987 89999999999999985
No 40
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.37 E-value=5.4e-07 Score=59.92 Aligned_cols=68 Identities=12% Similarity=0.006 Sum_probs=38.6
Q ss_pred HHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025 17 ENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 17 ~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~ 95 (129)
.+|+++++.. ...+|.|..+|+++++.+| +|+|+++++.. + .+++.|..+|..+|+.+..
T Consensus 62 A~~aL~~~~~-------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~ 122 (131)
T 1te4_A 62 AAWIIGNFQD-------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARK 122 (131)
T ss_dssp HHHHHGGGCS-------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHH
T ss_pred HHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHH
Confidence 3456666531 2345666666666666666 66666666541 1 1345556666666666666
Q ss_pred HHHHHHhh
Q 044025 96 VCLNGNRK 103 (129)
Q Consensus 96 ~aL~al~n 103 (129)
.+.++|++
T Consensus 123 ~A~~aL~~ 130 (131)
T 1te4_A 123 VAVNYLET 130 (131)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHh
Confidence 66666654
No 41
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.32 E-value=7.9e-07 Score=74.33 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=73.0
Q ss_pred HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH-HhhcCCCCHHHHHHHHHHHhhcccCC
Q 044025 31 VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL-CDLLVCSDQRIVTVCLNGNRKLGMDN 108 (129)
Q Consensus 31 vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l-~~lL~~~d~~~~~~aL~al~ni~~~~ 108 (129)
..+..++| +++.|++++++.| .|||||+|++.+ ++..+.+++.|+++++ ..+|..++..++..+..+++|++. .
T Consensus 31 ~~~~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~-~ 106 (684)
T 4gmo_A 31 LREDKILP-VLKDLKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ-E 106 (684)
T ss_dssp HHHHTTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH-H
T ss_pred cchhhHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh-h
Confidence 34456666 4567999999999 999999999975 3555667788888775 557888999999999999999963 2
Q ss_pred CChHHHHHHHhccchhhhc
Q 044025 109 RVNVYTQMINECDGLDKIE 127 (129)
Q Consensus 109 ~~~~~~~~i~e~ggl~~le 127 (129)
+....+..+.+.|++..|.
T Consensus 107 ~g~d~~~~l~~~~il~~L~ 125 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTAIE 125 (684)
T ss_dssp SCHHHHHHHHHTTHHHHHH
T ss_pred cCchHHHHHHHcChHHHHH
Confidence 4567778888888887764
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.23 E-value=8e-06 Score=68.17 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=88.0
Q ss_pred HHHHHHHhhH----hHHHHH-hh-ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc-CChHHHHhhcCC
Q 044025 17 ENTLDSNIVV----CMYTVI-VA-NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ-GYIKPLCDLLVC 88 (129)
Q Consensus 17 ~~w~lsNI~~----qiq~vi-~~-g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~-g~i~~l~~lL~~ 88 (129)
.+-.|+.++. ..|..| ++ +.+|.|+.+|++....+| ||.-.|++++.+ + ..++.++.. |+++++.+++..
T Consensus 142 alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~-n-~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 142 GVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS-N-GAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-C-HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC-C-HHHHHHHHHhccHHHHHHHHHh
Confidence 3348888887 366654 44 999999999999999999 999999999998 4 568888876 999999999976
Q ss_pred CC----HHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025 89 SD----QRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129 (129)
Q Consensus 89 ~d----~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L 129 (129)
+. ..++.-+|..+.|+.+. +......+.|.|+++++..|
T Consensus 220 Eg~~~Ggivv~DCL~ll~nLLr~--N~sNQ~~FrEt~~i~~L~~L 262 (651)
T 3grl_A 220 EGNSDGGIVVEDCLILLQNLLKN--NNSNQNFFKEGSYIQRMKPW 262 (651)
T ss_dssp HTGGGSHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCGGGGGGG
T ss_pred cCCCccchhHHHHHHHHHHHHhc--CHHHHHHHHHcCCHHHHHHH
Confidence 44 47888899999999753 33345679999999988643
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.92 E-value=0.00011 Score=51.37 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=20.3
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 77 GYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 77 g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+.++.|..+|..+++.++..++++|+++
T Consensus 138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 138 RAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777777766
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.88 E-value=0.00012 Score=51.41 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=19.2
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 78 YIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 78 ~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.++.|..+|..+++.++..++++|+++
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 566677777767777777777777766
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.87 E-value=7.4e-05 Score=52.57 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=23.7
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 77 GYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 77 g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+.++.|..+|..+++.+...++++++++.
T Consensus 112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 112 RAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 36788888888888888888888888763
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.84 E-value=8.4e-05 Score=51.88 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=22.2
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 78 YIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+++.+..+|..+++.++..++++++++.
T Consensus 108 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 108 AVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 6777788888888888888888887763
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.82 E-value=0.00011 Score=53.80 Aligned_cols=75 Identities=11% Similarity=-0.028 Sum_probs=34.6
Q ss_pred HHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025 17 ENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 17 ~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~ 95 (129)
.+|++++++... ......++|.|..+++++++.+| .|+|+++++... +++|.|..+|..+++.+..
T Consensus 111 a~~aL~~l~~~~-~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~ 177 (280)
T 1oyz_A 111 AIESTAQRCKKN-PIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK------------ATIPLLINLLKDPNGDVRN 177 (280)
T ss_dssp HHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------------CCHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHhccC-CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------------HHHHHHHHHHcCCCHHHHH
Confidence 346666665200 00012345555556666666666 666666554321 2344444444444444444
Q ss_pred HHHHHHhhc
Q 044025 96 VCLNGNRKL 104 (129)
Q Consensus 96 ~aL~al~ni 104 (129)
.++++++++
T Consensus 178 ~a~~aL~~~ 186 (280)
T 1oyz_A 178 WAAFAININ 186 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 444444443
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.80 E-value=0.0001 Score=53.97 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCH
Q 044025 13 SKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQ 91 (129)
Q Consensus 13 ~~~r~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~ 91 (129)
.....+++++++.. ...+|.|..+++++++.+| .|+|+++++..+ ++ .+++.|..+|..+++
T Consensus 144 vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~---------~~~~~L~~~l~d~~~ 206 (280)
T 1oyz_A 144 VRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININKYD-NS---------DIRDCFVEMLQDKNE 206 (280)
T ss_dssp HHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-CH---------HHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-cH---------HHHHHHHHHhcCCCH
Confidence 33334568877642 4589999999999999999 999999998543 22 245677777877888
Q ss_pred HHHHHHHHHHhhcc
Q 044025 92 RIVTVCLNGNRKLG 105 (129)
Q Consensus 92 ~~~~~aL~al~ni~ 105 (129)
.+...++++|+++.
T Consensus 207 ~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 207 EVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888888763
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.75 E-value=9.9e-06 Score=68.33 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=69.0
Q ss_pred cCCCCChHHHHHHHHHHHhhHhH----HHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025 6 KNPKLPLSKLKENTLDSNIVVCM----YTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIK 80 (129)
Q Consensus 6 ~~~~~~~~~~r~~w~lsNI~~qi----q~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~ 80 (129)
++...+.....++|++++++... ....-.+++|.+++.+.+.++++| .|+|++++++.+..++...|+ .++++
T Consensus 409 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~ 486 (852)
T 4fdd_A 409 LSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILD 486 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHH
Confidence 33333334444569999999821 122346889999999999999999 999999999976433322233 45788
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 81 PLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 81 ~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.|..++...+.+....++++++.+.
T Consensus 487 ~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 487 TLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHH
Confidence 8888887667777777888887763
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.70 E-value=1.7e-05 Score=66.85 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=66.1
Q ss_pred HHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCH
Q 044025 17 ENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQ 91 (129)
Q Consensus 17 ~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~ 91 (129)
++|++++|+. +++. .-.+++|.+..++++.++.+| .|+|++++++.... .+.....-.++++.+...|..+++
T Consensus 379 a~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~~~~ll~~L~~~L~d~~~ 456 (852)
T 4fdd_A 379 GILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV-SQPPDTYLKPLMTELLKRILDSNK 456 (852)
T ss_dssp HHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH-HSCTTTTHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHhCCCH
Confidence 3479999988 2222 336889999999999999999 99999999986421 110011113578899999988899
Q ss_pred HHHHHHHHHHhhcc
Q 044025 92 RIVTVCLNGNRKLG 105 (129)
Q Consensus 92 ~~~~~aL~al~ni~ 105 (129)
.++..+++++.++.
T Consensus 457 ~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 457 RVQEAACSAFATLE 470 (852)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998874
No 51
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.66 E-value=8.5e-05 Score=49.06 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=49.8
Q ss_pred HHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 37 ILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 37 lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+|.|..+|++.++.+| .|+|+++++.. + .+++.|..+|..+|+.++..++++|+++.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~---~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD---E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS---H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC---H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 6999999999999999 99999999863 1 24788888888899999999999999884
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.64 E-value=0.00011 Score=56.71 Aligned_cols=89 Identities=9% Similarity=0.082 Sum_probs=68.8
Q ss_pred HHHH-HHHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCC
Q 044025 15 LKEN-TLDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSD 90 (129)
Q Consensus 15 ~r~~-w~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d 90 (129)
.+.+ .++..++. . +.++ ..++|.+...+++.+..+| .|++++++++.|..++.+...+ ..++|.+..+|..++
T Consensus 345 r~~a~~~L~~l~~~~~-~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~ 421 (462)
T 1ibr_B 345 CKAAGVCLMLLATCCE-DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS 421 (462)
T ss_dssp HHHHHHHHHHHHHHTT-TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHHHHhcc-HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCC
Confidence 3344 58888876 2 2222 4688999999999999999 9999999999875433332222 468999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 044025 91 QRIVTVCLNGNRKLGM 106 (129)
Q Consensus 91 ~~~~~~aL~al~ni~~ 106 (129)
+.++..++++++++..
T Consensus 422 ~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 422 VVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998843
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.54 E-value=0.00016 Score=59.07 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=64.4
Q ss_pred HHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHH
Q 044025 19 TLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVC 97 (129)
Q Consensus 19 w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~a 97 (129)
.+++++.. .. +...++|.+..++.+.++.+| .|++++.++... +++.+. +.++++.+..+|..+|+.++..+
T Consensus 108 ~~L~~i~~--~~-~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~---~~~~~~~l~~lL~d~d~~V~~~A 180 (591)
T 2vgl_B 108 RTMGCIRV--DK-ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVE---DQGFLDSLRDLIADSNPMVVANA 180 (591)
T ss_dssp HHHHTCCS--GG-GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHH---HHHHHHHHHHTTSCSCHHHHHHH
T ss_pred HHHHcCCh--HH-HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-Chhhcc---cccHHHHHHHHhCCCChhHHHHH
Confidence 47777753 11 123467889999999999999 999999999985 445332 35788999999999999999999
Q ss_pred HHHHhhccc
Q 044025 98 LNGNRKLGM 106 (129)
Q Consensus 98 L~al~ni~~ 106 (129)
+.++.++..
T Consensus 181 ~~aL~~i~~ 189 (591)
T 2vgl_B 181 VAALSEISE 189 (591)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999999854
No 54
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.47 E-value=0.0008 Score=56.24 Aligned_cols=115 Identities=13% Similarity=0.174 Sum_probs=81.3
Q ss_pred hHHHHH-H-HHHHHhhH---hHHHHHhh-ccHHHHHHHhccCCh----HHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025 12 LSKLKE-N-TLDSNIVV---CMYTVIVA-NIILLLVHLLQHAEL----EIK-EATWAISSATYGGSHEHIQFLVSQGYIK 80 (129)
Q Consensus 12 ~~~~r~-~-w~lsNI~~---qiq~vi~~-g~lp~L~~ll~~~~~----~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~ 80 (129)
...+|+ + -.|+++++ .+|+++.. |++++|+.++..... .+. ++.-.+.|+..+ ++..-.++.+.|++|
T Consensus 179 rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~-N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN-NNSNQNFFKEGSYIQ 257 (651)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCGG
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc-CHHHHHHHHHcCCHH
Confidence 355564 3 49999999 89999875 999999999997544 566 999999999998 555445777899999
Q ss_pred HHHhhcCCCCHH------HHHH---HHHHHhhcccCCC----ChHHHHHHHhccchhhhc
Q 044025 81 PLCDLLVCSDQR------IVTV---CLNGNRKLGMDNR----VNVYTQMINECDGLDKIE 127 (129)
Q Consensus 81 ~l~~lL~~~d~~------~~~~---aL~al~ni~~~~~----~~~~~~~i~e~ggl~~le 127 (129)
+|..+|...+.. -+.+ ++..++-+...++ +......+-++|++..+-
T Consensus 258 ~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll 317 (651)
T 3grl_A 258 RMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLC 317 (651)
T ss_dssp GGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHH
Confidence 999999753321 2233 5555554422211 233445788999987654
No 55
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.35 E-value=0.00022 Score=58.26 Aligned_cols=101 Identities=13% Similarity=0.050 Sum_probs=72.5
Q ss_pred ccCCCCChHHHHHHHHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCC--------HHHHHHHH
Q 044025 5 QKNPKLPLSKLKENTLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGS--------HEHIQFLV 74 (129)
Q Consensus 5 ~~~~~~~~~~~r~~w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~--------~~~i~~lv 74 (129)
.++...+....++++++.++.. .-+.+-+.+++|.+.++|.+.++.++ .|+++++.++.... +..+.+++
T Consensus 129 ~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll 208 (591)
T 2vgl_B 129 CLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLL 208 (591)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHH
Confidence 4444444455556689999987 21223346899999999999999999 99999999987531 12244444
Q ss_pred h----------------------------cCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 75 S----------------------------QGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 75 ~----------------------------~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
+ ..+++.+..+|++.++.++..+.+++..+.
T Consensus 209 ~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 209 TALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp HHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred HcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 2 246777778888888888888999888874
No 56
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00051 Score=50.56 Aligned_cols=101 Identities=10% Similarity=0.091 Sum_probs=71.6
Q ss_pred HHHHhhHhHHHHH----hhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCH--HHHHHHHhcCChHHHHhhcCCCCHH
Q 044025 20 LDSNIVVCMYTVI----VANIILLLVHLLQHAELEIK-EATWAISSATYGGSH--EHIQFLVSQGYIKPLCDLLVCSDQR 92 (129)
Q Consensus 20 ~lsNI~~qiq~vi----~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~--~~i~~lv~~g~i~~l~~lL~~~d~~ 92 (129)
++.+++..+.... -..+++.+...|++.++.+| +++.+|+.++..... +++...+...++|.+..+|..+++.
T Consensus 127 al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~ 206 (249)
T 2qk1_A 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPA 206 (249)
T ss_dssp HHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHH
Confidence 7777765211011 12588899999999999999 999999998865331 4444444457999999999999999
Q ss_pred HHHHHHHHHhhcccCCCChHHHHHHHhc
Q 044025 93 IVTVCLNGNRKLGMDNRVNVYTQMINEC 120 (129)
Q Consensus 93 ~~~~aL~al~ni~~~~~~~~~~~~i~e~ 120 (129)
++..+.++++.+.+.-|.+.+...+.+.
T Consensus 207 VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 207 IRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999998864432444444444443
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.21 E-value=0.0023 Score=53.23 Aligned_cols=85 Identities=9% Similarity=0.142 Sum_probs=66.1
Q ss_pred HHHHHhhHhH-HHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHH
Q 044025 19 TLDSNIVVCM-YTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTV 96 (129)
Q Consensus 19 w~lsNI~~qi-q~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~ 96 (129)
.++..++... +.++ ..++|.+...+.+.++++| .|+|++++++.+..++.+...+ ..++|.+...|..+++.++..
T Consensus 350 ~~l~~l~~~~~~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~ 427 (876)
T 1qgr_A 350 VCLMLLATCCEDDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDT 427 (876)
T ss_dssp HHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHCcHhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHH
Confidence 4888877611 1222 4678888888999999999 9999999999875545444333 358999999999899999999
Q ss_pred HHHHHhhcc
Q 044025 97 CLNGNRKLG 105 (129)
Q Consensus 97 aL~al~ni~ 105 (129)
++++++++.
T Consensus 428 a~~~l~~~~ 436 (876)
T 1qgr_A 428 AAWTVGRIC 436 (876)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
No 58
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.17 E-value=0.003 Score=50.00 Aligned_cols=83 Identities=6% Similarity=-0.017 Sum_probs=56.2
Q ss_pred HHHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025 18 NTLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 18 ~w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~ 95 (129)
+++++.++. --...+...++|.+...++++++++| .++|+++.++..-.++. ....++|.+..++...|++++.
T Consensus 501 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~~d~d~~vr~ 576 (588)
T 1b3u_A 501 LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKY 576 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHcCCCchhHHH
Confidence 467777776 11122335678888888888888888 88888888875422221 2234566677777778888888
Q ss_pred HHHHHHhhc
Q 044025 96 VCLNGNRKL 104 (129)
Q Consensus 96 ~aL~al~ni 104 (129)
.+.++++.+
T Consensus 577 ~a~~al~~l 585 (588)
T 1b3u_A 577 FAQEALTVL 585 (588)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888888766
No 59
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.16 E-value=0.0009 Score=55.08 Aligned_cols=87 Identities=7% Similarity=-0.004 Sum_probs=69.1
Q ss_pred CChHHHHHHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025 10 LPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88 (129)
Q Consensus 10 ~~~~~~r~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~ 88 (129)
++...--+++++++|.. ..+. ..++|.+..+|.+.++.+| .|++++.++... +|+.+. +.++.+..+|..
T Consensus 120 n~~vr~lAL~~L~~i~~--~~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-~p~~v~-----~~~~~l~~lL~D 190 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGS--SEMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-VPELME-----MFLPATKNLLNE 190 (618)
T ss_dssp SSHHHHHHHHHHHHHCC--HHHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-CGGGGG-----GGGGGTTTSTTC
T ss_pred CHhHHHHHHHHHHhcCC--HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ChHHHH-----HHHHHHHHHhCC
Confidence 33343345579999975 1222 4678999999999999999 999999999986 555442 688999999999
Q ss_pred CCHHHHHHHHHHHhhcc
Q 044025 89 SDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 89 ~d~~~~~~aL~al~ni~ 105 (129)
.|+.++..++.++..+.
T Consensus 191 ~d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 191 KNHGVLHTSVVLLTEMC 207 (618)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHhHHHHHHHHHHHHH
Confidence 99999999999999885
No 60
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.97 E-value=0.0078 Score=49.95 Aligned_cols=86 Identities=8% Similarity=0.040 Sum_probs=65.3
Q ss_pred HHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHH
Q 044025 19 TLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVC 97 (129)
Q Consensus 19 w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~a 97 (129)
.++.+++.....-+-..++|.+.+.+.+.+.++| .|+|++++++.+..++.+...++ .++|.+...+..+++.++..+
T Consensus 353 ~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a 431 (861)
T 2bpt_A 353 ACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETT 431 (861)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHH
Confidence 5888877611111124577888888889999999 99999999998754455544443 488999999988899999999
Q ss_pred HHHHhhcc
Q 044025 98 LNGNRKLG 105 (129)
Q Consensus 98 L~al~ni~ 105 (129)
+++++++.
T Consensus 432 ~~~l~~l~ 439 (861)
T 2bpt_A 432 AWCIGRIA 439 (861)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 61
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.92 E-value=0.0038 Score=49.46 Aligned_cols=83 Identities=8% Similarity=0.022 Sum_probs=63.3
Q ss_pred HHHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025 19 TLDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 19 w~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~ 95 (129)
.++++++. .-+ .....++|.+..++++.++.+| .++++++.++..-.++ .....++|.+..++..+++.++.
T Consensus 463 ~~l~~l~~~~~~~-~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~ 537 (588)
T 1b3u_A 463 SNLKKLVEKFGKE-WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRF 537 (588)
T ss_dssp HHHHHHHHHHCHH-HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHhCch-hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHH
Confidence 48888776 111 1235788999999888999999 9999999988641111 12346889999999989999999
Q ss_pred HHHHHHhhccc
Q 044025 96 VCLNGNRKLGM 106 (129)
Q Consensus 96 ~aL~al~ni~~ 106 (129)
.++++++.+.+
T Consensus 538 ~a~~~l~~l~~ 548 (588)
T 1b3u_A 538 NVAKSLQKIGP 548 (588)
T ss_dssp HHHHHHHHHGG
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.68 E-value=0.0015 Score=54.28 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=61.3
Q ss_pred HHHHHHhhH--h---HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHH--HHHHHHhcCChHHHHhhcCCC
Q 044025 18 NTLDSNIVV--C---MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHE--HIQFLVSQGYIKPLCDLLVCS 89 (129)
Q Consensus 18 ~w~lsNI~~--q---iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~--~i~~lv~~g~i~~l~~lL~~~ 89 (129)
+|++++++. . +.. .-..++|.++..+++.++.+| .|+|++++++..-.+. ...++ ..+++.+...|..
T Consensus 387 ~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~- 462 (876)
T 1qgr_A 387 VMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSA- 462 (876)
T ss_dssp HHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTS-
T ss_pred HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcC-
Confidence 479999987 2 322 235799999999999999999 9999999998752211 01111 2467788888876
Q ss_pred CHHHHHHHHHHHhhcc
Q 044025 90 DQRIVTVCLNGNRKLG 105 (129)
Q Consensus 90 d~~~~~~aL~al~ni~ 105 (129)
++.+...+++++.++.
T Consensus 463 ~~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 463 EPRVASNVCWAFSSLA 478 (876)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4888888999998764
No 63
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.65 E-value=0.0036 Score=45.00 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=61.3
Q ss_pred HHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHH--HHHHHhcCChHHHHhhcCCCCHHHH
Q 044025 20 LDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIV 94 (129)
Q Consensus 20 ~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~--i~~lv~~g~i~~l~~lL~~~d~~~~ 94 (129)
++.+++. .. ..++|.+...+++.++.+| +++-.++.+.....+++ ..++ ..++|.+..+|..++++++
T Consensus 121 aL~~~~~~~~~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR 193 (242)
T 2qk2_A 121 AIDAIYASTSL-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVR 193 (242)
T ss_dssp HHHHHHTTSCH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHcCCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHH
Confidence 7777765 32 2478899999999999999 99999999755433332 2333 2589999999999999999
Q ss_pred HHHHHHHhhcc
Q 044025 95 TVCLNGNRKLG 105 (129)
Q Consensus 95 ~~aL~al~ni~ 105 (129)
..+..+++.+.
T Consensus 194 ~~A~~~l~~l~ 204 (242)
T 2qk2_A 194 DSSAEALGTLI 204 (242)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 64
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.99 E-value=0.0052 Score=47.18 Aligned_cols=89 Identities=11% Similarity=0.002 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhHh-HHHHHhhccHHHHHHHhccC--ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCC-
Q 044025 15 LKENTLDSNIVVC-MYTVIVANIILLLVHLLQHA--ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS- 89 (129)
Q Consensus 15 ~r~~w~lsNI~~q-iq~vi~~g~lp~L~~ll~~~--~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~- 89 (129)
...+.+++.|+.+ ...---.+++|.+++.+.++ ++.+| .|++++.+++....++.....+ ..+++.+...|...
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~ 185 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEE 185 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCC
Confidence 3445688888761 11001157999999999998 99999 9999999998642222211111 23778888988876
Q ss_pred -CHHHHHHHHHHHhhc
Q 044025 90 -DQRIVTVCLNGNRKL 104 (129)
Q Consensus 90 -d~~~~~~aL~al~ni 104 (129)
++.++..+++++.++
T Consensus 186 ~~~~vr~~a~~~l~~~ 201 (462)
T 1ibr_B 186 PSNNVKLAATNALLNS 201 (462)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 789999999999875
No 65
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.97 E-value=0.0051 Score=51.02 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=59.7
Q ss_pred HHHHHHhhH-----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCC-----HHHHHHHHhcCChHHHHhhc
Q 044025 18 NTLDSNIVV-----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGS-----HEHIQFLVSQGYIKPLCDLL 86 (129)
Q Consensus 18 ~w~lsNI~~-----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~-----~~~i~~lv~~g~i~~l~~lL 86 (129)
++++++++. .+...+ ..++|.+...+.+.++.+| .++|++++++..-. .+... .++|.+...|
T Consensus 390 ~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-----~~l~~l~~~l 463 (861)
T 2bpt_A 390 VMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP-----GVVQACLIGL 463 (861)
T ss_dssp HHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH-----HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH-----HHHHHHHHHh
Confidence 369999986 222222 4689999999999999999 99999999986411 12222 3577888888
Q ss_pred CCCCHHHHHHHHHHHhhcc
Q 044025 87 VCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 87 ~~~d~~~~~~aL~al~ni~ 105 (129)
..+ +.+...+.+++.++.
T Consensus 464 ~~~-~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 464 QDH-PKVATNCSWTIINLV 481 (861)
T ss_dssp TSC-HHHHHHHHHHHHHHH
T ss_pred ccC-hHHHHHHHHHHHHHH
Confidence 654 888888999998764
No 66
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.48 E-value=0.21 Score=35.52 Aligned_cols=77 Identities=6% Similarity=-0.047 Sum_probs=60.9
Q ss_pred HHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHH
Q 044025 19 TLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRI 93 (129)
Q Consensus 19 w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~ 93 (129)
-+++.++. .++. .-..++|.+.+.+.+.+..+| .|+-++.+++...+. .. ++|.+...|.+.++.+
T Consensus 79 ~~l~~la~~l~~~~~~-~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---~~-----ll~~l~~~l~~~~~~v 149 (242)
T 2qk2_A 79 KCLALLAKGLAKRFSN-YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---EA-----QQESIVESLSNKNPSV 149 (242)
T ss_dssp HHHHHHHHHHGGGGHH-HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---HH-----HHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHhhhHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---HH-----HHHHHHHHHcCCChHH
Confidence 38888776 2211 225689999999999999999 999999999876432 22 5678888899899999
Q ss_pred HHHHHHHHhhc
Q 044025 94 VTVCLNGNRKL 104 (129)
Q Consensus 94 ~~~aL~al~ni 104 (129)
...++..|+.+
T Consensus 150 r~~~l~~l~~~ 160 (242)
T 2qk2_A 150 KSETALFIARA 160 (242)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999885
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=94.79 E-value=0.039 Score=45.54 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=63.5
Q ss_pred HHHHHhhHhHHHHHhhccHHHHHHHh--ccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025 19 TLDSNIVVCMYTVIVANIILLLVHLL--QHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 19 w~lsNI~~qiq~vi~~g~lp~L~~ll--~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~ 95 (129)
.+++||.. ..+. ..++|.+.+++ .+.++.|| -|+.|+.++..- +|+.+.+ .+.++.+.++|...|+.++.
T Consensus 133 r~L~~i~~--~e~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~~~---~~~~~~l~~lL~d~d~~V~~ 205 (621)
T 2vgl_A 133 HCIANVGS--REMA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPM---GDWTSRVVHLLNDQHLGVVT 205 (621)
T ss_dssp HHHHHHCC--HHHH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGCCC---CSCHHHHHHHTTCSCHHHHH
T ss_pred HHhhccCC--HHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ChhhcCc---hhHHHHHHHHhCCCCccHHH
Confidence 38888754 2222 45788999999 88999999 999999999975 4554331 48999999999999999999
Q ss_pred HHHHHHhhcc
Q 044025 96 VCLNGNRKLG 105 (129)
Q Consensus 96 ~aL~al~ni~ 105 (129)
.++.++..+.
T Consensus 206 ~a~~~l~~i~ 215 (621)
T 2vgl_A 206 AATSLITTLA 215 (621)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988774
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.63 E-value=0.33 Score=36.10 Aligned_cols=103 Identities=8% Similarity=0.023 Sum_probs=71.1
Q ss_pred ccccCCCCChHHHHHHHHHHHhhHh----HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCC--CHHHHHHHHh
Q 044025 3 IQQKNPKLPLSKLKENTLDSNIVVC----MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGG--SHEHIQFLVS 75 (129)
Q Consensus 3 i~~~~~~~~~~~~r~~w~lsNI~~q----iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~--~~~~i~~lv~ 75 (129)
+..+..+++....|+.-++-++-.+ ....+-..++|.++.++.+.|.++- .|.-++..+..|. ++++...+.+
T Consensus 39 ~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~ 118 (265)
T 3b2a_A 39 LELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAK 118 (265)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3456677888888888899988762 3333347899999999999999999 9999999998875 3444333221
Q ss_pred ------------------------------cCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 76 ------------------------------QGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 76 ------------------------------~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.+++..+.+++.+.|+.+...++.++-|++
T Consensus 119 aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 119 TLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 013344455555666666666666666664
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.50 E-value=0.05 Score=40.48 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=55.7
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCC-CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhccc
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGG-SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGM 106 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~-~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~ 106 (129)
+++..+..++.+.|.++| -|..++.|++... +++... +++.-+.++|++.|+.++..+|.++.++..
T Consensus 150 ~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 150 LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 566788889989999999 9999999999752 334333 577888899999999999999999998753
No 70
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.41 E-value=0.052 Score=46.53 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025 10 LPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATY 63 (129)
Q Consensus 10 ~~~~~~r~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~ 63 (129)
.+....+++|+++.++..++.-.-..++|.+++.|.+.+..|| .||||+.+++.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 5666777889999998721111236688999999998899999 99999999886
No 71
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.68 E-value=0.61 Score=38.15 Aligned_cols=78 Identities=18% Similarity=0.081 Sum_probs=55.9
Q ss_pred HHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHH
Q 044025 19 TLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTV 96 (129)
Q Consensus 19 w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~ 96 (129)
.+++.++. .-+.+ ....+.+..++.++|..+| .|...+..+++..+.+. +++.|...+...|.++...
T Consensus 335 ~~L~~i~~~~p~~~--~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~--------iv~eL~~~l~~~d~e~r~~ 404 (618)
T 1w63_A 335 TSLLKTVQTDHNAV--QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRG--------MMKELLYFLDSCEPEFKAD 404 (618)
T ss_dssp HHHHHHHHHHHHHH--GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHH--------HHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHhhCHHHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHH--------HHHHHHHHHHhCCHHHHHH
Confidence 46666654 22222 4466788888899999999 99999999988755332 2356666666788899999
Q ss_pred HHHHHhhccc
Q 044025 97 CLNGNRKLGM 106 (129)
Q Consensus 97 aL~al~ni~~ 106 (129)
+..+|++++.
T Consensus 405 ~v~~I~~la~ 414 (618)
T 1w63_A 405 CASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=93.54 E-value=0.64 Score=33.72 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=53.7
Q ss_pred HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHH
Q 044025 20 LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIV 94 (129)
Q Consensus 20 ~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~ 94 (129)
+++-|.+ |.+.+ ...+|+|..+|.+.|.-+| .|.-++.|++.- ++. .+.++ +..+-. ++.....+.
T Consensus 164 aLnFi~alGen~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npk-lRkii----~~kl~e-~~D~S~lv~ 234 (253)
T 2db0_A 164 ALNFIEAMGENSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDK-LRKVV----IKRLEE-LNDTSSLVN 234 (253)
T ss_dssp HHHHHHTCCTTTHHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHH-HHHHH----HHHHHH-CCCSCHHHH
T ss_pred HHHHHHHHhccCcccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHH-HHHHH----HHHHHH-hcCcHHHHH
Confidence 5555555 77777 7889999999999999999 999999999886 544 44443 334444 344455666
Q ss_pred HHHHHHHhhc
Q 044025 95 TVCLNGNRKL 104 (129)
Q Consensus 95 ~~aL~al~ni 104 (129)
.-+-+|++++
T Consensus 235 ~~V~egL~rl 244 (253)
T 2db0_A 235 KTVKEGISRL 244 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777888776
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.46 E-value=0.17 Score=44.08 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=49.4
Q ss_pred ccHHHHHHHh-ccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 35 NIILLLVHLL-QHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 35 g~lp~L~~ll-~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
..+|+++..| ++.|+.+| -|+||++.++.| ++.. .++..|..++..+|..+.+.|+.+++.+.
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aG-n~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG-KGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS-SCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC-CCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 4678888754 56899999 999999999987 4321 14556667777899999999999999874
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.08 E-value=0.95 Score=35.03 Aligned_cols=83 Identities=7% Similarity=-0.018 Sum_probs=64.5
Q ss_pred HHHHHH--HHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025 13 SKLKEN--TLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88 (129)
Q Consensus 13 ~~~r~~--w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~ 88 (129)
.+.|.. .++++|.. .+- ..+.+.+-+.|.+.++.|| -|+.+...+... .|+.++ +.+..+-+++..
T Consensus 118 ~~iR~lALRtL~~I~~~~m~----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~-----~~~~~l~~ll~d 187 (355)
T 3tjz_B 118 DSYRGPAVRALCQITDSTML----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVK-----RWVNEAQEAASS 187 (355)
T ss_dssp HHHHHHHHHHHHHHCCTTTH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHH-----TTHHHHHHHTTC
T ss_pred HhHHHHHHHHHhcCCCHHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHH-----HHHHHHHHHhcC
Confidence 455543 48888865 211 2467788889999999999 999999999987 566443 688899999988
Q ss_pred CCHHHHHHHHHHHhhcc
Q 044025 89 SDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 89 ~d~~~~~~aL~al~ni~ 105 (129)
.++.++-.++-++..+.
T Consensus 188 ~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 188 DNIMVQYHALGLLYHVR 204 (355)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 99999888888887774
No 75
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.82 E-value=0.17 Score=44.14 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=61.8
Q ss_pred HHHHHhhH--hH-------HHHHhhccHHHHHHHhc-cCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC
Q 044025 19 TLDSNIVV--CM-------YTVIVANIILLLVHLLQ-HAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV 87 (129)
Q Consensus 19 w~lsNI~~--qi-------q~vi~~g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~ 87 (129)
-+++.++. .- ..-.-..++|.|.+.+. ++++++| .|+-++++++.........|+ ..+++.|...|.
T Consensus 108 ~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~ 185 (1230)
T 1u6g_C 108 IGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLT 185 (1230)
T ss_dssp HHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGG
T ss_pred HHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHc
Confidence 48888876 21 11233679999999998 5889999 999999999852110111122 346788888898
Q ss_pred CCCHHHHHHHHHHHhhccc
Q 044025 88 CSDQRIVTVCLNGNRKLGM 106 (129)
Q Consensus 88 ~~d~~~~~~aL~al~ni~~ 106 (129)
+.++.++..++.+++.+..
T Consensus 186 ~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 186 SPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 8899999999999988753
No 76
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.31 E-value=0.33 Score=41.16 Aligned_cols=90 Identities=8% Similarity=-0.050 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh
Q 044025 10 LPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD 84 (129)
Q Consensus 10 ~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~ 84 (129)
.+....+.+|+++..+. +-+.+ ..+++.++..|.+ ++++ .||+++.+++.... +++.-.+ ..+++.+..
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~-~~l~p~~-~~il~~l~~ 575 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVLHALGN--PELSVSSVSTLKKICRECK-YDLPPYA-ANIVAVSQD 575 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG-GGCTTTH-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH-HHHHhhH-HHHHHHHHH
Confidence 34444455699999887 22222 6788999988865 8999 99999999996422 2211000 123344444
Q ss_pred hcCC--CCHHHHHHHHHHHhhcc
Q 044025 85 LLVC--SDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 85 lL~~--~d~~~~~~aL~al~ni~ 105 (129)
++.. -+.+....++++++.+.
T Consensus 576 ~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 576 VLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HhccCCCChHHHHHHHHHHHHHH
Confidence 4443 24677777888887764
No 77
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=92.28 E-value=0.61 Score=36.06 Aligned_cols=99 Identities=10% Similarity=-0.048 Sum_probs=74.5
Q ss_pred cccCCCCChHHHHHHHHHHHhh-H---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcC
Q 044025 4 QQKNPKLPLSKLKENTLDSNIV-V---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQG 77 (129)
Q Consensus 4 ~~~~~~~~~~~~r~~w~lsNI~-~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g 77 (129)
+.|...+.....|....|..+- . -++++|..+-+..|+.....++-..+ .+.-|+.++-... +-..-++ +..
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v--~Gm~gvvs~~~ 202 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV--DGMLGVVAHSD 202 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH--HHHHHHHHCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc--ccccchhCCHH
Confidence 3344444455555555777633 2 58889999999999999999999999 9999999998751 2233444 345
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 78 YIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 78 ~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.|..+..++.+.+..+++.+|.-|..+
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~ 229 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVF 229 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 778888888888899999999988766
No 78
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=92.26 E-value=0.65 Score=40.17 Aligned_cols=84 Identities=11% Similarity=0.011 Sum_probs=53.9
Q ss_pred HHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH--h--------cCChH
Q 044025 16 KENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV--S--------QGYIK 80 (129)
Q Consensus 16 r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv--~--------~g~i~ 80 (129)
+.+|+++..+. +-+.+ ..+++.+++.|.++++++| .||+++.+++.... +. ++ . ..++.
T Consensus 519 ~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~-~~---l~~~~~~~~~p~~~~il~ 592 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK-YH---FVIQQPRESEPFIQTIIR 592 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT-HH---HHSCCTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HH---hhcccCCCCCcHHHHHHH
Confidence 45689998887 22222 5678888888888899999 99999999997522 22 22 0 11233
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 81 PLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 81 ~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.+..++..-+.+-...+.+|++.+.
T Consensus 593 ~l~~~~~~~~~~~~~~~~eai~~ii 617 (1049)
T 3m1i_C 593 DIQKTTADLQPQQVHTFYKACGIII 617 (1049)
T ss_dssp THHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3334444445555566777877663
No 79
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=91.17 E-value=0.55 Score=41.01 Aligned_cols=67 Identities=10% Similarity=0.242 Sum_probs=54.6
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
..+++.+.+.|.+.++++| .|+-++++++.+..+++..+ +++.++..|..+++.++..+..+++.+.
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~-----i~~~Ll~~l~d~~~~vR~~a~~~L~~i~ 114 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET-----IVDTLCTNMLSDKEQLRDISSIGLKTVI 114 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH-----HHHHHHHHTTCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 3688999999999999999 99999999998754444433 5678888888888888888999998764
No 80
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=90.96 E-value=0.47 Score=41.50 Aligned_cols=90 Identities=9% Similarity=-0.007 Sum_probs=59.8
Q ss_pred ChHHHHHH--HHHHHhhH----hHHHHHhhccHHHHHHHhcc-----CChHHH-HHHHHHHHhccC--CCHHHHHHHHhc
Q 044025 11 PLSKLKEN--TLDSNIVV----CMYTVIVANIILLLVHLLQH-----AELEIK-EATWAISSATYG--GSHEHIQFLVSQ 76 (129)
Q Consensus 11 ~~~~~r~~--w~lsNI~~----qiq~vi~~g~lp~L~~ll~~-----~~~~v~-eA~wal~Ni~~~--~~~~~i~~lv~~ 76 (129)
+.+..+++ |+++-|+. ....-+-..++|.|+.++.+ ....+| -++|+++..+.- .+++.+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~----- 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR----- 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----
Confidence 44666654 89999987 22333336788888888874 344567 788999987642 1223222
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 77 GYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 77 g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.++..+...|..+++.+...|.+|+.++.
T Consensus 540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~ 568 (1023)
T 4hat_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIV 568 (1023)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 24455666665567899999999998873
No 81
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.95 E-value=0.47 Score=40.38 Aligned_cols=89 Identities=11% Similarity=-0.082 Sum_probs=57.5
Q ss_pred CChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh
Q 044025 10 LPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD 84 (129)
Q Consensus 10 ~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~ 84 (129)
.+....+.+|+++..+. +-+.+ ..++|.++..| + ++++ .|+|++.+++.... +.+.-.+ ..++..+..
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~-~~l~p~~-~~ll~~l~~ 591 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ-LQLKPYA-DPLLNACHA 591 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH-HHHHHHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH-HhccccH-HHHHHHHHH
Confidence 34444456699999887 12222 45777777777 3 7899 99999999996532 3222111 245566666
Q ss_pred hcCC--CCHHHHHHHHHHHhhcc
Q 044025 85 LLVC--SDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 85 lL~~--~d~~~~~~aL~al~ni~ 105 (129)
++.. -+.+....++++++.+.
T Consensus 592 ~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 592 SLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHHHH
Confidence 6665 35678888888888764
No 82
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.48 E-value=0.78 Score=34.17 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=51.3
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccC-CCHHHHHHHHhcCCh---HHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYG-GSHEHIQFLVSQGYI---KPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~-~~~~~i~~lv~~g~i---~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
..+++.+.+-+.+.+.++| |++-.+.++... |.+ ....+ |.++.++...|..++..|+.++..+
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3577888888888899999 988888887632 322 13478 9999999999999999999999765
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=89.52 E-value=4.6 Score=29.24 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=52.0
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHH-----------------HHHHH-----h----------cCChH
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEH-----------------IQFLV-----S----------QGYIK 80 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~-----------------i~~lv-----~----------~g~i~ 80 (129)
.+++|.+..=+.-+|+++| .-.+++.-++.. +|+. ...++ + ...+|
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIara-nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLp 184 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLP 184 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHH
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHHHh-ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchH
Confidence 4677777777788899999 999999877643 3322 12111 1 12678
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhccc
Q 044025 81 PLCDLLVCSDQRIVTVCLNGNRKLGM 106 (129)
Q Consensus 81 ~l~~lL~~~d~~~~~~aL~al~ni~~ 106 (129)
.+..||...|.-++..+.+++.+++.
T Consensus 185 rL~aLL~D~deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 185 RIINLLHDGDEIVRASAVEALVHLAT 210 (253)
T ss_dssp HHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCcchhhhHHHHHHHHHHHH
Confidence 88899988888888889999998853
No 84
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.02 E-value=1.9 Score=37.74 Aligned_cols=83 Identities=8% Similarity=-0.029 Sum_probs=52.2
Q ss_pred HHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh--c--------CChHHH
Q 044025 18 NTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS--Q--------GYIKPL 82 (129)
Q Consensus 18 ~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~--~--------g~i~~l 82 (129)
+|+++..+. +-+.+ ..++..+.+.+....++++ -||||+.+++.... + .++. . .++..+
T Consensus 521 ~~~lGry~~wl~~~~~~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~-~---~l~~~~~~e~~p~~~~il~~l 594 (1023)
T 4hat_C 521 MYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK-Y---HFVIQQPRESEPFIQTIIRDI 594 (1023)
T ss_dssp HHHHHTCHHHHHHCHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT-H---HHHSCCTTCSSCHHHHHHHTH
T ss_pred HHHHHHHHHHHhccHHHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-H---HhhccCCCCCchhHHHHHHHH
Confidence 499999988 22222 4566666666666778999 99999999997521 2 2221 1 122223
Q ss_pred HhhcCCCCHHHHHHHHHHHhhccc
Q 044025 83 CDLLVCSDQRIVTVCLNGNRKLGM 106 (129)
Q Consensus 83 ~~lL~~~d~~~~~~aL~al~ni~~ 106 (129)
......-+++-...+.+|++.+.+
T Consensus 595 ~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 595 QKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHH
Confidence 333333566777788888887643
No 85
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.56 E-value=0.74 Score=33.40 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=51.7
Q ss_pred ccHHHHHHHh-ccCChHHH-HHHHHHHHhccCCC-HHHH-HHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 35 NIILLLVHLL-QHAELEIK-EATWAISSATYGGS-HEHI-QFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 35 g~lp~L~~ll-~~~~~~v~-eA~wal~Ni~~~~~-~~~i-~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.++..|...+ +..+..++ .|+-+++.++.+-. +.-- .|... ++|++++.+....+.++..+-.++..+.
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~ 132 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTIC 132 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5677888888 68899999 99999999997532 2211 34433 7899999998888888877777776653
No 86
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=86.38 E-value=1.8 Score=36.99 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=44.0
Q ss_pred hccC---ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 44 LQHA---ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 44 l~~~---~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
|.++ .+.+| .|||+++.++..-.++... .+++.++..|..+++.+...|..|+.++.
T Consensus 464 l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 464 LTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hcCCCCCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 4555 88999 9999999998754333322 36778888888778899999999999864
No 87
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=86.08 E-value=1 Score=36.39 Aligned_cols=68 Identities=25% Similarity=0.186 Sum_probs=55.9
Q ss_pred ccHHHHHHHhcc----------CChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHh
Q 044025 35 NIILLLVHLLQH----------AELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNR 102 (129)
Q Consensus 35 g~lp~L~~ll~~----------~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ 102 (129)
.++..|+++|++ .|+.+. =||.-|+..+.. -|+ -+.++ +.|+=..++.||.++|+++...||.|+.
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~-gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-Ccc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 577889999973 377888 999999999976 344 33454 6699999999999999999999999998
Q ss_pred hc
Q 044025 103 KL 104 (129)
Q Consensus 103 ni 104 (129)
.+
T Consensus 473 kl 474 (480)
T 1ho8_A 473 AI 474 (480)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 88
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=85.19 E-value=3 Score=32.20 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=54.1
Q ss_pred HHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 40 LVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 40 L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+++-|.+++.+.+ .+.+-|..+... +.+-+..+++.+.+..|+......+...+..+|.|++++
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~-D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~L 187 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQE-DKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQL 187 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHT-CTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhc-chHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4455667777778 999999996553 447788999999999999999999999999999999987
No 89
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=84.54 E-value=4.2 Score=33.32 Aligned_cols=87 Identities=10% Similarity=-0.065 Sum_probs=61.9
Q ss_pred CCChHHHHHHH-HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025 9 KLPLSKLKENT-LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL 85 (129)
Q Consensus 9 ~~~~~~~r~~w-~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l 85 (129)
+......|-+. ++++++. +-+.+ --++..+.+=|.++++.+| -|..+++++.. ++-.++ ++|.+..+
T Consensus 85 s~~~~~Krl~YL~l~~~~~~~~e~~--~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~~-----l~~~v~~~ 154 (621)
T 2vgl_A 85 SNRYTEKQIGYLFISVLVNSNSELI--RLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAEA-----FAGEIPKI 154 (621)
T ss_dssp CSCHHHHHHHHHHHHHSCCCCHHHH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHHH-----HTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHccCCcHHH--HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHHH-----HHHHHHHH
Confidence 34445555554 7777766 22222 1145566667788899999 99999999964 454443 56888898
Q ss_pred c--CCCCHHHHHHHHHHHhhcc
Q 044025 86 L--VCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 86 L--~~~d~~~~~~aL~al~ni~ 105 (129)
| .+.++.+...|+-++.++.
T Consensus 155 l~~~d~~~~VRK~A~~al~kl~ 176 (621)
T 2vgl_A 155 LVAGDTMDSVKQSAALCLLRLY 176 (621)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHHH
Confidence 8 8899999999999998763
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=80.50 E-value=7.9 Score=29.80 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=46.2
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
++..+.+=++++++-+| -|..+++++.... -+++ +.+++...|.+.+|.+...|+-+..++
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~---m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL 166 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITDST---MLQA-----IERYMKQAIVDKVPSVSSSALVSSLHL 166 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT---THHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH---HHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45666677778888888 8888888888763 3333 345677888888899999888888776
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=78.81 E-value=5.8 Score=34.25 Aligned_cols=90 Identities=12% Similarity=0.049 Sum_probs=55.0
Q ss_pred HHHHHH--HHHHHhhH----hHHHHHhhccHHHHHHHhcc-----CChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025 13 SKLKEN--TLDSNIVV----CMYTVIVANIILLLVHLLQH-----AELEIK-EATWAISSATYGGSHEHIQFLVSQGYIK 80 (129)
Q Consensus 13 ~~~r~~--w~lsNI~~----qiq~vi~~g~lp~L~~ll~~-----~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~ 80 (129)
+..+++ |+++-|+. ....-+-..+++.+..+... +.+.++ .++|+++..+.- -..+-+++- .+++
T Consensus 467 W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~-~~~~~~~l~--~vl~ 543 (1049)
T 3m1i_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRF-LKAHWNFLR--TVIL 543 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHH-HHHCHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH-HHhHHHHHH--HHHH
Confidence 444443 79988876 21222123455555554332 355667 799999977642 011112222 3667
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025 81 PLCDLLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 81 ~l~~lL~~~d~~~~~~aL~al~ni~ 105 (129)
.+.+.|..+++.+...|..++.++.
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~ 568 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIV 568 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7777887788999999999998874
No 92
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=78.22 E-value=5 Score=35.42 Aligned_cols=92 Identities=9% Similarity=-0.024 Sum_probs=57.4
Q ss_pred CCCChHHHHH--HHHHHHhhH----hHHHHHhhccHHHHHHHhccC-----ChHHH-HHHHHHHHhccC--CCHHHHHHH
Q 044025 8 PKLPLSKLKE--NTLDSNIVV----CMYTVIVANIILLLVHLLQHA-----ELEIK-EATWAISSATYG--GSHEHIQFL 73 (129)
Q Consensus 8 ~~~~~~~~r~--~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~-----~~~v~-eA~wal~Ni~~~--~~~~~i~~l 73 (129)
++...+...+ +|+++-|+. ..+.-+=..+++.|+.+..+. ...++ ..+|+++..+.- .+++.++.
T Consensus 488 ~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~- 566 (1073)
T 3gjx_A 488 GTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT- 566 (1073)
T ss_dssp SCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-
T ss_pred CCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-
Confidence 3333344444 489999876 233333346677777776654 33456 778999877632 12333322
Q ss_pred HhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 74 VSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 74 v~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
++..+.+.+..+++.++..|..|+..+
T Consensus 567 ----vl~~L~~~m~~~~~~vq~aA~~af~~i 593 (1073)
T 3gjx_A 567 ----VVNKLFEFMHETHDGVQDMACDTFIKI 593 (1073)
T ss_dssp ----HHHHHHHHTTCCSTTHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 555666777778889999999999776
No 93
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=72.52 E-value=5.6 Score=32.10 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=48.4
Q ss_pred hHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh--HHHHhhcC-CCCHHHHHHHHHHHhhcccCCCC---hHHHHHHHhcc
Q 044025 49 LEIK-EATWAISSATYGGSHEHIQFLVSQGYI--KPLCDLLV-CSDQRIVTVCLNGNRKLGMDNRV---NVYTQMINECD 121 (129)
Q Consensus 49 ~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i--~~l~~lL~-~~d~~~~~~aL~al~ni~~~~~~---~~~~~~i~e~g 121 (129)
+.++ +++.++==++-. ++-.+.+.+.++. +.+.+.++ +...+++++++-++.|+...... ....+++..++
T Consensus 242 ~Ql~Y~~ll~iWlLSF~--~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~ 319 (480)
T 1ho8_A 242 IQLQYHSLLLIWLLTFN--PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGN 319 (480)
T ss_dssp HHHHHHHHHHHHHHTTS--HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcC--HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHcc
Confidence 5567 777666555553 3555666666644 66667675 46799999999999998532211 12234565566
Q ss_pred chhhhc
Q 044025 122 GLDKIE 127 (129)
Q Consensus 122 gl~~le 127 (129)
+++.++
T Consensus 320 ~l~~l~ 325 (480)
T 1ho8_A 320 ALPTVQ 325 (480)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 666544
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=71.53 E-value=5.1 Score=28.89 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHHhccCChHHH-HHHHHHHHhccC-CC-HHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 38 LLLVHLLQHAELEIK-EATWAISSATYG-GS-HEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 38 p~L~~ll~~~~~~v~-eA~wal~Ni~~~-~~-~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+.+...+.+..++++ +++-.++++... |. .-.....+ ..+++.+..+|.+.|+.++..+...+..+
T Consensus 142 e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 142 ELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 334444555556666 555555554321 10 00011111 12455667778899999999999988665
No 95
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=68.28 E-value=29 Score=24.61 Aligned_cols=88 Identities=14% Similarity=0.011 Sum_probs=60.2
Q ss_pred HHHHHH-HHHHhhH-hHHHHHhhccHHHHHHHhccC-----------ChHHH-HHHHHHHHhccCCCHHHHHHHHh-cCC
Q 044025 14 KLKENT-LDSNIVV-CMYTVIVANIILLLVHLLQHA-----------ELEIK-EATWAISSATYGGSHEHIQFLVS-QGY 78 (129)
Q Consensus 14 ~~r~~w-~lsNI~~-qiq~vi~~g~lp~L~~ll~~~-----------~~~v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~ 78 (129)
.++..| .|.+=.. =++.. ..+.+..|++.|..- +.+.+ ++.-|+..+... ..=..++++ .+.
T Consensus 21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~--~~G~~~vl~~~~~ 97 (233)
T 2f31_A 21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN--KFGIKTMLETEEG 97 (233)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS--HHHHHHHHTSSSH
T ss_pred HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC--hHHHHHHHcCcHH
Confidence 445555 5544222 34555 455666666666531 45677 999999888764 234666775 578
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 79 IKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 79 i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+..++..|.++++++...+++-+.-+
T Consensus 98 i~~l~~~L~s~~~~~r~~~leLL~~l 123 (233)
T 2f31_A 98 ILLLVRAMDPAVPNMMIDAAKLLSAL 123 (233)
T ss_dssp HHHHHTTCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 99999999999999999998877655
No 96
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=67.66 E-value=21 Score=28.43 Aligned_cols=69 Identities=22% Similarity=0.356 Sum_probs=53.6
Q ss_pred hccHHHHHHHhc-cCChHHH-HHHHHHHHhccCCCHHHHHHH-HhcCChHHHHhhcCC-------CCH-------HHHHH
Q 044025 34 ANIILLLVHLLQ-HAELEIK-EATWAISSATYGGSHEHIQFL-VSQGYIKPLCDLLVC-------SDQ-------RIVTV 96 (129)
Q Consensus 34 ~g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~~~~~~~~i~~l-v~~g~i~~l~~lL~~-------~d~-------~~~~~ 96 (129)
.+.+|.++..+. ++|.++- .-.--+||..++. +.++.+ +..|+|+.|++.... .+. .++..
T Consensus 323 ~e~LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHK--q~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 323 ENILPFLLRLIEIHPDDEVIYSGTGFLSNVVAHK--QHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHSTTC--HHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred cccchHHHHHhccCCCcceEEecchHHHHHHhcc--cchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 367899998887 6899999 9999999999874 667777 488999999986632 111 47888
Q ss_pred HHHHHhhc
Q 044025 97 CLNGNRKL 104 (129)
Q Consensus 97 aL~al~ni 104 (129)
+|+++.|.
T Consensus 401 ~LRalNNF 408 (619)
T 3c2g_A 401 CLRTLNNF 408 (619)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 89999874
No 97
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=66.83 E-value=12 Score=32.80 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=49.0
Q ss_pred HHHHHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHH---HHHHHHhcCChHHHHhhcC--C
Q 044025 17 ENTLDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHE---HIQFLVSQGYIKPLCDLLV--C 88 (129)
Q Consensus 17 ~~w~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~---~i~~lv~~g~i~~l~~lL~--~ 88 (129)
.++++..+++ .-..+ +..|..+.++.|..|| .|+.+++.+..|.+.. .+..+ ++.|.+... +
T Consensus 632 AalALGli~aGn~~~~a-----id~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~-----l~~L~~~~~dk~ 701 (963)
T 4ady_A 632 TAFALGIACAGKGLQSA-----IDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI-----NKNFLSVITNKH 701 (963)
T ss_dssp HHHHHHHHTSSSCCHHH-----HHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH-----HHHHHHHHHCSS
T ss_pred HHHHHHHhccCCCcHHH-----HHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHH-----HHHHHHHHhccc
Confidence 4478888877 32333 4466777888999999 9999999999885533 34433 334555543 3
Q ss_pred CCH--HHHHHHHHHHhh
Q 044025 89 SDQ--RIVTVCLNGNRK 103 (129)
Q Consensus 89 ~d~--~~~~~aL~al~n 103 (129)
.|+ +......++|-+
T Consensus 702 ~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 702 QEGLAKFGACVAQGIMN 718 (963)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 453 444445555533
No 98
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=66.29 E-value=35 Score=29.96 Aligned_cols=81 Identities=11% Similarity=0.095 Sum_probs=62.2
Q ss_pred HHHHhhH--hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025 20 LDSNIVV--CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 20 ~lsNI~~--qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~ 95 (129)
++.-|.. .-.++ ..++|.|.+.|.+. ....+ -|+.++..++..+ ++|+..-+ ..++|.+.+.+....+++-.
T Consensus 118 ~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~-~~~~p~~~~~~~d~k~~v~~ 193 (986)
T 2iw3_A 118 TLISIVNAVNPVAI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRM-PELIPVLSETMWDTKKEVKA 193 (986)
T ss_dssp HHHHHHHHSCGGGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHH-HHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHhCCHHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhc-cchhcchHhhcccCcHHHHH
Confidence 5555544 22233 67899999999876 78999 9999999999874 66654433 35899999999888999999
Q ss_pred HHHHHHhhc
Q 044025 96 VCLNGNRKL 104 (129)
Q Consensus 96 ~aL~al~ni 104 (129)
.+..++..+
T Consensus 194 ~~~~~~~~~ 202 (986)
T 2iw3_A 194 AATAAMTKA 202 (986)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888764
No 99
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=65.39 E-value=18 Score=29.40 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=44.6
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHh
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR 102 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ 102 (129)
.++-.+.++....|..|| .|.-.|-.+|.+ +.+.. +...|..||.+.|+.-+..+=++|-
T Consensus 65 ~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~k-----iaDvL~QlLqtdd~~E~~~V~~sL~ 125 (507)
T 3u0r_A 65 SAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPR-----VADILTQLLQTDDSAEFNLVNNALL 125 (507)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHH-----HHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhh-----HHHHHHHHHhccchHHHHHHHHHHH
Confidence 355678889999999999 999999999987 33433 4557788888877765555555543
No 100
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=64.49 E-value=14 Score=26.29 Aligned_cols=42 Identities=12% Similarity=0.197 Sum_probs=34.1
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG 77 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g 77 (129)
.+++.+..++.+.++-|| -..|+|..+... +++.+...++..
T Consensus 166 ~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~p~~v~~fl~~~ 208 (232)
T 3jxy_A 166 LLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-NPDVVWEYVQNN 208 (232)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHC
Confidence 345566677889999999 999999999987 778877777654
No 101
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=62.77 E-value=5.8 Score=29.98 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=33.6
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHH
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFL 73 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~l 73 (129)
-+.+.++++++.++|++.+ +-.-.+.+....|.+.++++-
T Consensus 6 Q~~varliHli~~~d~d~~f~il~~~rk~~~~gg~~Ri~~T 46 (298)
T 2r17_C 6 QSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFT 46 (298)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccceeec
Confidence 4788999999999999999 999888887766666777774
No 102
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=62.07 E-value=15 Score=25.86 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=33.4
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHH
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKP 81 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~ 81 (129)
+++.+-.++.++++-|| -.+|+|..+... +++.+...+..+-+++
T Consensus 160 ~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~~v~~fl~~~~l~~ 205 (220)
T 2b6c_A 160 LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEELMKELVLSP 205 (220)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHHHHSCCCH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHHHHHHHHhhccCCH
Confidence 35555557888999999 999999999987 7776666554444444
No 103
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=60.38 E-value=54 Score=25.19 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=46.5
Q ss_pred HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccC---CCHHHHHHHHhc-CChHHHHhhcCCCC
Q 044025 28 MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYG---GSHEHIQFLVSQ-GYIKPLCDLLVCSD 90 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~---~~~~~i~~lv~~-g~i~~l~~lL~~~d 90 (129)
++++...+++..|+..|..-+++.| +++-..+|+... +..-.+.|+.++ .++..|+.-...+|
T Consensus 71 ~~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~d 138 (341)
T 1upk_A 71 AQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE 138 (341)
T ss_dssp HHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT
T ss_pred HHHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccch
Confidence 4677889999999999999999999 999999999753 222356788753 45555555444333
No 104
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=58.89 E-value=39 Score=28.40 Aligned_cols=54 Identities=7% Similarity=-0.011 Sum_probs=29.4
Q ss_pred ccCChHHH-HHHHHHHHhccCCCH---HHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 45 QHAELEIK-EATWAISSATYGGSH---EHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 45 ~~~~~~v~-eA~wal~Ni~~~~~~---~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.+.+.+.+ -|+|+++.++.+... +.+.. +++.+..+ ..+++.+...++++++..
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~-----l~~~l~~l-~~~~~~vr~~~~~~l~~~ 516 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPG-----LIGLIPRI-SISNVQLADTVMFTIGAL 516 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHH-----HHHHGGGS-CCCSHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHH-----HHHHHHhC-CCCcHHHHHHHHHHHHHH
Confidence 44566777 777777777765331 11222 22222232 224566777777777654
No 105
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=58.73 E-value=14 Score=31.15 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=52.0
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCH---------------------HHHHHHHhc------------CCh
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSH---------------------EHIQFLVSQ------------GYI 79 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~---------------------~~i~~lv~~------------g~i 79 (129)
.+++|.++..|++.|.||| -|+-++.-++....- ..+-.|+.. ..+
T Consensus 298 d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LV 377 (800)
T 3oc3_A 298 DGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERL 377 (800)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGG
T ss_pred HHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHH
Confidence 5778899999999999999 999888887721111 111122221 467
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 80 KPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 80 ~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
|.|-..|+++-++++..+++++..+
T Consensus 378 PRL~PFLRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 378 KDIFPCFTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp GGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHHH
Confidence 7788888999999999999999765
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=58.16 E-value=14 Score=27.10 Aligned_cols=39 Identities=8% Similarity=0.061 Sum_probs=29.9
Q ss_pred cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025 36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS 75 (129)
Q Consensus 36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~ 75 (129)
++|.+-.+..++++-|| ..+|+|..++.. +|+.+..+++
T Consensus 179 ll~iL~~L~~D~s~yVrKSVan~LrD~SK~-~Pd~V~~~~~ 218 (240)
T 3l9t_A 179 AIRRIADLKEDVSEYVRKSVGNALRDISKK-FPDLVKIELK 218 (240)
T ss_dssp HHHHHHTTTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhhh-CHHHHHHHHH
Confidence 56777777777888888 888888888887 7777766654
No 107
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=54.30 E-value=72 Score=24.51 Aligned_cols=74 Identities=12% Similarity=0.024 Sum_probs=54.7
Q ss_pred HHHHHhhccHHHHHHHhc-----------cCChHHH-HHHHHHHHhccCCCHHHHHHHHh-cCChHHHHhhcCCCCHHHH
Q 044025 28 MYTVIVANIILLLVHLLQ-----------HAELEIK-EATWAISSATYGGSHEHIQFLVS-QGYIKPLCDLLVCSDQRIV 94 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~-----------~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~i~~l~~lL~~~d~~~~ 94 (129)
++.++ ++.+..|.+.|. ..|.+.+ ++.-|+..+... ..=+.++++ ...+..++..|.+..+.+.
T Consensus 103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~--~~G~~~vl~~~~~i~~l~~~L~s~~~~~~ 179 (383)
T 3eg5_B 103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN--KFGIKTMLETEEGILLLVRAMDPAVPNMM 179 (383)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS--HHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc--hhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence 45555 555677777775 2356788 999999888764 244666775 4789999999999999999
Q ss_pred HHHHHHHhhc
Q 044025 95 TVCLNGNRKL 104 (129)
Q Consensus 95 ~~aL~al~ni 104 (129)
..+++-+.-+
T Consensus 180 ~~aleLL~~l 189 (383)
T 3eg5_B 180 IDAAKLLSAL 189 (383)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888665
No 108
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=54.26 E-value=60 Score=28.47 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=53.8
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCC-CHHHHHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGG-SHEHIQFLVSQGYIKPLCDLLV-CSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~-~~~~i~~lv~~g~i~~l~~lL~-~~d~~~~~~aL~al~ni 104 (129)
+=++|.|.+-|......++ .++-.+.|+|.-- +|.....++ ...+|.+-.... .+||+.+..+-+|+.-+
T Consensus 250 ~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 250 SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 3478889999988899999 9999999999753 455554444 467888887665 49999999888877544
No 109
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.40 E-value=30 Score=23.45 Aligned_cols=68 Identities=4% Similarity=0.069 Sum_probs=47.6
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHH-HhcCChHHHHhhcCC-CCHHHHHHHHHHHhh
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFL-VSQGYIKPLCDLLVC-SDQRIVTVCLNGNRK 103 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~l-v~~g~i~~l~~lL~~-~d~~~~~~aL~al~n 103 (129)
.++..+..-|.++++.++ -|.-.+--+....- ..++.. .+...+..|..++.. .++.+..-++..+..
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG-~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCG-KIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC-HHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh-HHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 455667777889999999 88887777776532 344433 355677777776654 678888888887764
No 110
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=53.10 E-value=19 Score=23.69 Aligned_cols=69 Identities=7% Similarity=0.112 Sum_probs=46.7
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
.++..+..-|.++++.++ -|.-.+-.++...- ..++..+ +...+..+..++...++.+..-++..+..-
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG-~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCG-KIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcC-HHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 456667777888999999 88776666665422 3344333 455666666766667888888888888643
No 111
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=51.76 E-value=71 Score=23.70 Aligned_cols=76 Identities=12% Similarity=0.175 Sum_probs=53.1
Q ss_pred hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh--------cCChHHHHh-hcCCCCHHHHHH
Q 044025 27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS--------QGYIKPLCD-LLVCSDQRIVTV 96 (129)
Q Consensus 27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~--------~g~i~~l~~-lL~~~d~~~~~~ 96 (129)
-|..++..+++|...+.++.|..-.| =|.+.+..+..+. .-..|+.. ..++..++. +...+.+.+.+.
T Consensus 137 Vi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd--~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKh 214 (268)
T 2fv2_A 137 VINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD--TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKH 214 (268)
T ss_dssp HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccc--hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 35666789999999999999999999 9999998876541 22333321 123433443 334577888888
Q ss_pred HHHHHhhc
Q 044025 97 CLNGNRKL 104 (129)
Q Consensus 97 aL~al~ni 104 (129)
++++--++
T Consensus 215 iircYlRL 222 (268)
T 2fv2_A 215 VVRCYLRL 222 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887665
No 112
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=51.73 E-value=38 Score=26.38 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=53.2
Q ss_pred hHHHH-Hh------hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHH
Q 044025 27 CMYTV-IV------ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCL 98 (129)
Q Consensus 27 qiq~v-i~------~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL 98 (129)
|+|++ +. .+++|.++++-...+.++| -.+--|.-.+.. ..+.. ..+++.|..+|+..|+.+++.+.
T Consensus 48 q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~-----~~~l~~L~~LL~d~d~~V~K~~I 121 (386)
T 3o2t_A 48 QVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELL-----LKLIANLNMLLRDENVNVVKKAI 121 (386)
T ss_dssp HHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGH-----HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHHcCCCHHHHHHHH
Confidence 77775 32 2788889888888889998 777667666653 22332 23677888889889999999999
Q ss_pred HHHhhc
Q 044025 99 NGNRKL 104 (129)
Q Consensus 99 ~al~ni 104 (129)
.+..++
T Consensus 122 ~~~tsl 127 (386)
T 3o2t_A 122 LTMTQL 127 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888775
No 113
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=50.72 E-value=54 Score=24.36 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=55.9
Q ss_pred HHhhccHHHHHHHhccC-----ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 31 VIVANIILLLVHLLQHA-----ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 31 vi~~g~lp~L~~ll~~~-----~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
++++.+.-.|...|+.. -...| -..-+++.+....+++-+.++++.+++|.....+.....--..+|..-+.+|
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 45677665555555543 23668 8999999999888889999999999999999999876665555666666655
No 114
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=50.27 E-value=33 Score=24.46 Aligned_cols=41 Identities=7% Similarity=0.087 Sum_probs=31.0
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS 75 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~ 75 (129)
..++..+...+.+.++-+| -..|+|..+... +++..+..++
T Consensus 150 ~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~-~~~~~~~al~ 191 (235)
T 1t06_A 150 SDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS-YVPLHEKAVE 191 (235)
T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH-CGGGHHHHHH
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHhh-CHHHHHHHHH
Confidence 3456666668899999999 999999988876 5565555443
No 115
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=49.46 E-value=55 Score=21.72 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=50.4
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCC------CCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVC------SDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~------~d~~~~~~aL~al~ni 104 (129)
..++..+..-|.++++.++ -|.-.+-.+....- ..++..+ +...+..|..++.. .++.+..-++.-+..-
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCG-EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 3456677777889999999 99888888876532 3444444 66788888887753 4778888888888653
No 116
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=48.81 E-value=45 Score=22.73 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=49.7
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHH-HHhcCChHHHHhhcC------CCCHHHHHHHHHHHhhc
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQF-LVSQGYIKPLCDLLV------CSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~-lv~~g~i~~l~~lL~------~~d~~~~~~aL~al~ni 104 (129)
.++-.+..-|.++++.++ -|.-.+-.+..... ..++. +.+...+..|..++. ..++.+..-+++.+..-
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG-~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCG-RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH-HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 456677777889999999 99888888876532 44543 345677778888775 24678888888888653
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=47.97 E-value=43 Score=24.48 Aligned_cols=72 Identities=8% Similarity=0.131 Sum_probs=48.2
Q ss_pred hHHHHH-h------hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHH
Q 044025 27 CMYTVI-V------ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCL 98 (129)
Q Consensus 27 qiq~vi-~------~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL 98 (129)
|.++++ + ..++|.+..+-.+.+.++| -.+--+.-.+.. .++..- .+++.|..+|+..|+.+++.+.
T Consensus 38 qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I 111 (257)
T 3gs3_A 38 KVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLP-----HVINVVSMLLRDNSAQVIKRVI 111 (257)
T ss_dssp HHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHH
Confidence 666643 2 2455556665556778888 766666666533 223222 3678888889889999999999
Q ss_pred HHHhhc
Q 044025 99 NGNRKL 104 (129)
Q Consensus 99 ~al~ni 104 (129)
.+..++
T Consensus 112 ~~~~~i 117 (257)
T 3gs3_A 112 QACGSI 117 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 118
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=46.53 E-value=97 Score=23.76 Aligned_cols=87 Identities=14% Similarity=0.014 Sum_probs=57.8
Q ss_pred HHHHH-HHHHhhH-hHHHHHhhccHHHHHHHhcc-----------CChHHH-HHHHHHHHhccCCCHHHHHHHHh-cCCh
Q 044025 15 LKENT-LDSNIVV-CMYTVIVANIILLLVHLLQH-----------AELEIK-EATWAISSATYGGSHEHIQFLVS-QGYI 79 (129)
Q Consensus 15 ~r~~w-~lsNI~~-qiq~vi~~g~lp~L~~ll~~-----------~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~i 79 (129)
++..| .|.+=.. =++.+. .+.+..|++.|.. .+.+.+ ++.-|+..+... ..=+.++++ .+.+
T Consensus 26 L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~--~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 26 LESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN--KFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS--HHHHHHHHHSSSHH
T ss_pred HHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC--HHHHHHHHcCcHHH
Confidence 45555 5554222 344444 4555566666542 145777 999999888764 233556664 4789
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 80 KPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 80 ~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
..++..|.++.+++...+++-+.-+
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~al 127 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSAL 127 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHH
Confidence 9999999999999988888777654
No 119
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=42.26 E-value=1.1e+02 Score=23.37 Aligned_cols=75 Identities=9% Similarity=0.043 Sum_probs=59.5
Q ss_pred HHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc---CChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 29 YTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ---GYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 29 q~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~---g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+.++.++.+-.+.+..+.+.+++- +|.-.+--+-+. ........++. .....+-.||.+++....+.+++-|+.+
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgel 236 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGEL 236 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 346677888899999999999999 999888877665 44444455543 3567778899999999999999999876
No 120
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=41.10 E-value=45 Score=24.02 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=26.2
Q ss_pred hccCChHHH-HHHHH-----HHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHH
Q 044025 44 LQHAELEIK-EATWA-----ISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGN 101 (129)
Q Consensus 44 l~~~~~~v~-eA~wa-----l~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al 101 (129)
+.++++.+| .|+.. +..+..+.+ ..+++.+ +.--.+.|..+++.+|+.+...+...+
T Consensus 59 l~d~~~~VR~~AA~~l~~~~l~~L~~D~~-~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l 122 (244)
T 1lrv_A 59 LADPFWERRAIAVRYSPVEALTPLIRDSD-EVVRRAVAYRLPREQLSALMFDEDREVRITVADRL 122 (244)
T ss_dssp TTCSSHHHHHHHHTTSCGGGGGGGTTCSS-HHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHS
T ss_pred hcCCCHHHHHHHHHhCCHHHHHHHccCcC-HHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhC
Confidence 455566666 55532 223333333 2233333 221224455555556666666655544
No 121
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.07 E-value=58 Score=21.67 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=48.6
Q ss_pred ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcC------CCCHHHHHHHHHHHhhc
Q 044025 35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLV------CSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~------~~d~~~~~~aL~al~ni 104 (129)
.++..+..-+.+.++.++ -|.-.+--+....- ..++..+ +...+..|..++. ..++.+..-++..+..-
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG-~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCG-KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC-HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 456677777889999999 88877777775432 3444433 5667777777775 25778888888888653
No 122
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=40.30 E-value=22 Score=30.86 Aligned_cols=64 Identities=8% Similarity=-0.031 Sum_probs=42.3
Q ss_pred cHHHHHHHhc-----cCChHHH-HHHHHHHHhccCC--CHHHHHHHHhcCChHHHHh--hcCCCCHHHHHHHHHHHhhc
Q 044025 36 IILLLVHLLQ-----HAELEIK-EATWAISSATYGG--SHEHIQFLVSQGYIKPLCD--LLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 36 ~lp~L~~ll~-----~~~~~v~-eA~wal~Ni~~~~--~~~~i~~lv~~g~i~~l~~--lL~~~d~~~~~~aL~al~ni 104 (129)
+++.+..+++ .+.+.+| -++|+++..+.-- .++.+. .+++.|++ .+.++++++...+..++.++
T Consensus 491 l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f 564 (980)
T 3ibv_A 491 LSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRF 564 (980)
T ss_dssp HHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHH
Confidence 5566666665 6788999 9999999887541 222221 23444555 45556778888888888765
No 123
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=37.59 E-value=1.1e+02 Score=21.66 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=42.6
Q ss_pred hccHHHHHH-HhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVH-LLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~-ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
..++|.+++ .+.+....+| .|.-++.-++....+. .. +++.+...+.+.+|+++..++..|.++
T Consensus 101 ~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 101 STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQ-----SVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HH-----HHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 456787876 4778888888 7777666555332211 11 234555677888999998888888765
No 124
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=35.42 E-value=1.4e+02 Score=25.08 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=39.2
Q ss_pred cHHHHHHHhcc-----CChHHH-HHHHHHHHhccCCCHH---HHHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHhhcc
Q 044025 36 IILLLVHLLQH-----AELEIK-EATWAISSATYGGSHE---HIQFLVSQGYIKPLCDLLV-CSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 36 ~lp~L~~ll~~-----~~~~v~-eA~wal~Ni~~~~~~~---~i~~lv~~g~i~~l~~lL~-~~d~~~~~~aL~al~ni~ 105 (129)
+++.+.+.+.+ .+.+.+ -|+++++.++.+.... ++..++ +.+..+.. ..++.+...++++++...
T Consensus 460 ~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~-----~~l~~l~~~d~~~~vr~~a~~~l~~~~ 534 (971)
T 2x1g_F 460 LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLM-----RVLAEIPYEKLNVKLLGTALETMGSYC 534 (971)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHH-----HHHHHSCTTTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHH-----HHHHhcCccccCHHHHHHHHHHHHHHH
Confidence 34444444544 577888 9999999998874422 222222 22323221 247899999999999764
No 125
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=34.45 E-value=23 Score=24.33 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=45.3
Q ss_pred HHHHHhhccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHh----------cCChHHHHh--hcCCCCHHH
Q 044025 28 MYTVIVANIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVS----------QGYIKPLCD--LLVCSDQRI 93 (129)
Q Consensus 28 iq~vi~~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~----------~g~i~~l~~--lL~~~d~~~ 93 (129)
....+-.|.+..=++++.. ..+.-+ |+-|.+||+...++-+-.-..++ +|=++..++ .....+.+.
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~ 93 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 93 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHH
Confidence 3344556777776777654 355567 99999999998766432222221 233444433 223456677
Q ss_pred HHHHHHHHhh
Q 044025 94 VTVCLNGNRK 103 (129)
Q Consensus 94 ~~~aL~al~n 103 (129)
+..||..|-+
T Consensus 94 vd~ALd~lv~ 103 (172)
T 1wy6_A 94 VNKALDILVI 103 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7778777743
No 126
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=33.53 E-value=99 Score=22.64 Aligned_cols=63 Identities=13% Similarity=0.020 Sum_probs=42.2
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni 104 (129)
+-++|.|++=+.++...+| .+--++--+..-..++ .+.+.+++-+.+.+.+...-+++.+..+
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 4578999998888888888 4443332222111222 2556677777888999999999988876
No 127
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=29.95 E-value=57 Score=23.46 Aligned_cols=17 Identities=0% Similarity=-0.021 Sum_probs=7.6
Q ss_pred hhcCCCCHHHHHHHHHH
Q 044025 84 DLLVCSDQRIVTVCLNG 100 (129)
Q Consensus 84 ~lL~~~d~~~~~~aL~a 100 (129)
.++..+++.+...+...
T Consensus 177 ~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 177 LMTQDPEPEVRRIVASR 193 (244)
T ss_dssp GSTTCSSHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHh
Confidence 33344444444444433
No 128
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=29.79 E-value=21 Score=30.98 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHH--HhccCChHHH-HHHHHHHHhccC
Q 044025 8 PKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVH--LLQHAELEIK-EATWAISSATYG 64 (129)
Q Consensus 8 ~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~--ll~~~~~~v~-eA~wal~Ni~~~ 64 (129)
+..+......+|+++.-+. +-+.+ ..+++.+.. .+.+++.++| -|++++.+++..
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l--~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAI--PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTH--HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhH--HHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 3344455556688888877 11111 233444444 4445678999 999999999865
No 129
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=28.34 E-value=1.3e+02 Score=19.87 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=38.2
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc-CChHHHHh
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ-GYIKPLCD 84 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~-g~i~~l~~ 84 (129)
..+.+.|..-|.+..+.++ .|.-.|-+++..|++.-.+.+.++ ..|+.+.+
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~ 100 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFH 100 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTT
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHh
Confidence 3467788888899999999 999999999998886666555543 34444444
No 130
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=27.97 E-value=74 Score=23.18 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=9.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHH
Q 044025 80 KPLCDLLVCSDQRIVTVCLNG 100 (129)
Q Consensus 80 ~~l~~lL~~~d~~~~~~aL~a 100 (129)
+.+.....++++.+++.|.++
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~ 162 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEG 162 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHh
Confidence 333344444444444444444
No 131
>2l9j_A M2-1, matrix protein 2-1; processivity, transcription CO-factor, viral protein, RNA BI protein; NMR {Human respiratory syncytial virus}
Probab=27.89 E-value=82 Score=20.22 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=29.1
Q ss_pred hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025 34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS 75 (129)
Q Consensus 34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~ 75 (129)
-|..-.+-..+.+.+--.+ .||++++|+...-+...++..-+
T Consensus 18 LGs~~VlqsYi~~~~nITK~~AC~sl~~il~~L~~~dVk~aRD 60 (121)
T 2l9j_A 18 LGVVGVLESYIGSINNITKQSACVAMSKLLTELNSDDIKKLRD 60 (121)
T ss_dssp CSHHHHHHHHHHTSSCCCHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hhhHHHHHHHHccccchhHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3555556666677777778 99999999988765555555544
No 132
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=27.02 E-value=3.3e+02 Score=24.03 Aligned_cols=66 Identities=23% Similarity=0.223 Sum_probs=38.5
Q ss_pred cHHHHHHHhccC--ChHHH-HHHHHHHHhccCCCHH-HHHHHHhcCChHHHHhhcCCC---CHH--HHHHHHHHHhh
Q 044025 36 IILLLVHLLQHA--ELEIK-EATWAISSATYGGSHE-HIQFLVSQGYIKPLCDLLVCS---DQR--IVTVCLNGNRK 103 (129)
Q Consensus 36 ~lp~L~~ll~~~--~~~v~-eA~wal~Ni~~~~~~~-~i~~lv~~g~i~~l~~lL~~~---d~~--~~~~aL~al~n 103 (129)
+++.+-+.++.. +.... -+|||++.++..-+++ .-..+.+ +++.|+++.... |.+ +...+.+.+++
T Consensus 478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~--vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgr 552 (1073)
T 3gjx_A 478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT--VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQ 552 (1073)
T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH--HHHHHhcccccccccchhHHHHHHHHHHHhh
Confidence 566666666543 46777 8899999998432322 2233433 677777766433 333 44445566654
No 133
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=25.89 E-value=91 Score=27.25 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=10.9
Q ss_pred hHHH-HHHHHHHHhccC
Q 044025 49 LEIK-EATWAISSATYG 64 (129)
Q Consensus 49 ~~v~-eA~wal~Ni~~~ 64 (129)
.++| +|+||+.+++..
T Consensus 492 ~rvr~aAi~ALr~~~~~ 508 (1056)
T 1lsh_A 492 TRVQAEAIMALRNIAKR 508 (1056)
T ss_dssp HHHHHHHHHTTTTGGGT
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 4677 777777777654
No 134
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=25.54 E-value=2.1e+02 Score=21.21 Aligned_cols=106 Identities=10% Similarity=-0.052 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhH---hHHHHHh--hccHHHHHHHhccCChHHH-HHHHHHHHhccCC----CHHHHHHHHhcCChHHH
Q 044025 13 SKLKENTLDSNIVV---CMYTVIV--ANIILLLVHLLQHAELEIK-EATWAISSATYGG----SHEHIQFLVSQGYIKPL 82 (129)
Q Consensus 13 ~~~r~~w~lsNI~~---qiq~vi~--~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~----~~~~i~~lv~~g~i~~l 82 (129)
..+=.+-++.|+.. -.+.++. ..+++.+...+.+.+..+| -++-.+.|++... +.++... ++..+
T Consensus 164 n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l 238 (304)
T 3ebb_A 164 NQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLI 238 (304)
T ss_dssp HHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHH
Confidence 33334458999887 2222322 3566677777777788999 9999999998631 1122222 33334
Q ss_pred HhhcC-CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhh
Q 044025 83 CDLLV-CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDK 125 (129)
Q Consensus 83 ~~lL~-~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~ 125 (129)
..++. .+|++.+--.|-|++++.. .+.+..+.....|..+.
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~--~~~~~~~lak~l~~~~~ 280 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLIS--DDSNAVQLAKSLGVDSQ 280 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHh--CChhHHHHHHHcCHHHH
Confidence 44443 4788888889999999853 34555555555444433
No 135
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=24.78 E-value=26 Score=18.94 Aligned_cols=10 Identities=20% Similarity=0.488 Sum_probs=7.0
Q ss_pred HHHHHHHHhc
Q 044025 53 EATWAISSAT 62 (129)
Q Consensus 53 eA~wal~Ni~ 62 (129)
-+.|+|+|+=
T Consensus 29 PagWVLshL~ 38 (46)
T 1v54_M 29 PAGWVLYHLD 38 (46)
T ss_dssp HHHHHHHTHH
T ss_pred hHHHHHHHHH
Confidence 4678887764
No 136
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=23.47 E-value=1.6e+02 Score=19.24 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=52.6
Q ss_pred HHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025 17 ENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT 95 (129)
Q Consensus 17 ~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~ 95 (129)
..||+.|+-. . ..++..+-+-+....++-| -+.|.+-.++.... ......+..++.+.|++....-|+....
T Consensus 31 T~~a~~~~~~-a-----~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g-~~y~~~F~~~l~~~f~~~~~~~d~~~r~ 103 (144)
T 1sz9_A 31 TKLAEENISC-A-----QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVG-SPYTIYFSRNLFNLYKRTYLLVDNTTRT 103 (144)
T ss_dssp HHHHHHTGGG-H-----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-TTHHHHHHTTHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHH-H-----HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3467776532 1 2334444555567788999 99999998886532 3456778889999999988766776666
Q ss_pred HHHHHH
Q 044025 96 VCLNGN 101 (129)
Q Consensus 96 ~aL~al 101 (129)
-..+-+
T Consensus 104 k~~rL~ 109 (144)
T 1sz9_A 104 KLINMF 109 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 137
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=21.77 E-value=3.1e+02 Score=23.90 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=44.6
Q ss_pred HHHHHH-HHHHhhH--hHH-HHHhhccHH----HHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh
Q 044025 14 KLKENT-LDSNIVV--CMY-TVIVANIIL----LLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD 84 (129)
Q Consensus 14 ~~r~~w-~lsNI~~--qiq-~vi~~g~lp----~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~ 84 (129)
..+.+| +++++.. ... ......+++ .+.+.++.++.+-+ -+..||+|+-.. .-+..+.+ +++..-.
T Consensus 411 l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---~~l~~l~~--~l~~~~~ 485 (1056)
T 1lsh_A 411 LRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---NSIKKIQR--FLPGQGK 485 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---GGHHHHHT--TSTTSSS
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---hHHHHHHH--hhcCccc
Confidence 334567 8888876 111 001112233 34455567788888 999999999864 32333322 1111100
Q ss_pred hcCCCCHHHHHHHHHHHhhcc
Q 044025 85 LLVCSDQRIVTVCLNGNRKLG 105 (129)
Q Consensus 85 lL~~~d~~~~~~aL~al~ni~ 105 (129)
-=......+...|++||.++.
T Consensus 486 ~~~~~~~rvr~aAi~ALr~~~ 506 (1056)
T 1lsh_A 486 SLDEYSTRVQAEAIMALRNIA 506 (1056)
T ss_dssp CCCCSCHHHHHHHHHTTTTGG
T ss_pred cccccchHHHHHHHHHHHHhh
Confidence 000112355566777776664
No 138
>2euc_A Hypothetical protein YFMB; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus subtilis} SCOP: a.249.1.1
Probab=21.66 E-value=72 Score=20.57 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHHHhhH
Q 044025 11 PLSKLKENTLDSNIVV 26 (129)
Q Consensus 11 ~~~~~r~~w~lsNI~~ 26 (129)
|+....++|.+|.+..
T Consensus 5 SpEQQyNAWvVSDLVK 20 (130)
T 2euc_A 5 SPEQQYNAWIVSDLVK 20 (130)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHhhHHHHHHHHH
Confidence 5678889999999976
Done!