BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044026
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LYD|A Chain A, The Solution Structure Of The Dm Dcp1 Evh1 Domain In
          Complex With The Xrn1 Dbm Peptide
          Length = 134

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)

Query: 5  GKLMPNL--DQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
          G  M +L  D+  T+M NL  +++IDP+ +EI+ +++HV FY FN   N+W + DVEG
Sbjct: 1  GPHMADLMADESITRM-NLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEG 57


>pdb|1Q67|A Chain A, Crystal Structure Of Dcp1p
 pdb|1Q67|B Chain B, Crystal Structure Of Dcp1p
          Length = 231

 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 28/44 (63%)

Query: 17 KMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
          K LN  V+ R DP I+++L    H + Y+++ + ++W++ + +G
Sbjct: 20 KALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQG 63


>pdb|2QKL|A Chain A, The Crystal Structure Of Fission Yeast Mrna Decapping
          Enzyme Dcp1-Dcp2 Complex
 pdb|2QKM|A Chain A, The Crystal Structure Of Fission Yeast Mrna Decapping
          Enzyme Dcp1-Dcp2 Complex
 pdb|2QKM|C Chain C, The Crystal Structure Of Fission Yeast Mrna Decapping
          Enzyme Dcp1-Dcp2 Complex
 pdb|2QKM|E Chain E, The Crystal Structure Of Fission Yeast Mrna Decapping
          Enzyme Dcp1-Dcp2 Complex
 pdb|2QKM|G Chain G, The Crystal Structure Of Fission Yeast Mrna Decapping
          Enzyme Dcp1-Dcp2 Complex
          Length = 127

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 19 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
          +NL VL+   P IE I+  A+HV  Y+F++ S +W +  +EG
Sbjct: 11 VNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEG 52


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,923,232
Number of Sequences: 62578
Number of extensions: 49542
Number of successful extensions: 47
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 3
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)