BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044026
         (101 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana
          GN=At1g08370 PE=1 SV=2
          Length = 367

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 75/96 (78%), Gaps = 2/96 (2%)

Query: 1  MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
          MSQ GK++PNLDQ ST++LNLTVLQRIDP+IEEILITAAHVTFYEFNIE +QWSRKDVEG
Sbjct: 1  MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEG 60

Query: 61 SLFVVKRFLS--FFFFLINVANCSHLLPRFFFHFYF 94
          SLFVVKR     F F ++N  N  +L+      F +
Sbjct: 61 SLFVVKRSTQPRFQFIVMNRRNTDNLVENLLGDFEY 96


>sp|Q5R413|DCP1B_PONAB mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1
          Length = 609

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 19 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFLS 70
          ++L  LQR DP+I  I+  A+ V  Y F   +N+W + DVEG+LFV  R  S
Sbjct: 16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSAS 67


>sp|Q8IZD4|DCP1B_HUMAN mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=2
          Length = 617

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 19 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFLS 70
          ++L  LQR DP+I  I+  A+ V  Y F   +N+W + DVEG+LFV  R  S
Sbjct: 16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSAS 67


>sp|Q3SZL6|DCP1B_BOVIN mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE=2 SV=1
          Length = 581

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 19 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFLS 70
          ++L  L+R DP+I  I+  A+ V  Y F   +N+W + DVEG+LFV  R  S
Sbjct: 14 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYSRSAS 65


>sp|Q91YD3|DCP1A_MOUSE mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a PE=1 SV=1
          Length = 602

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 11 LDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFLS 70
          L  ++ + ++L  L++ DP+I  I      V  Y F  ++NQW + D+EG+LFV +R  S
Sbjct: 23 LLSRAEQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSAS 82

Query: 71 FF--FFLINVANCSHLL 85
           +  F ++N  N  +L+
Sbjct: 83 PYHGFTIVNRLNMHNLV 99


>sp|Q9NPI6|DCP1A_HUMAN mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A PE=1 SV=2
          Length = 582

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 19 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFLSFF--FFLI 76
          ++L  L++ DP+I  I      V  Y F  ++NQW + D+EG+LFV +R  S +  F ++
Sbjct: 11 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGFTIV 70

Query: 77 NVANCSHLL 85
          N  N  +L+
Sbjct: 71 NRLNMHNLV 79


>sp|Q3U564|DCP1B_MOUSE mRNA-decapping enzyme 1B OS=Mus musculus GN=Dcp1b PE=2 SV=1
          Length = 578

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 19 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFLS 70
          ++L  L+R DP+I  I+  A+ V  Y F   +N+W +  VEG+LFV  R  S
Sbjct: 16 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFVYTRSAS 67


>sp|Q9P805|DCP1_SCHPO mRNA-decapping enzyme subunit 1 OS=Schizosaccharomyces pombe
          (strain 972 / ATCC 24843) GN=dcp1 PE=1 SV=1
          Length = 127

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 13/86 (15%)

Query: 19 LNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFLSF------- 71
          +NL VL+   P IE I+  A+HV  Y+F++ S +W +  +EG+ F+VK   +        
Sbjct: 11 VNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQRARVGYVILN 70

Query: 72 ------FFFLINVANCSHLLPRFFFH 91
                 +  IN  +  HL+ R+  H
Sbjct: 71 RNSPENLYLFINHPSNVHLVDRYLIH 96


>sp|Q12517|DCP1_YEAST mRNA-decapping enzyme subunit 1 OS=Saccharomyces cerevisiae
          (strain ATCC 204508 / S288c) GN=DCP1 PE=1 SV=1
          Length = 231

 Score = 40.4 bits (93), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 17 KMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFLSFFFFLI 76
          K LN  V+ R DP I+++L    H + Y+++ + ++W++ + +G L +         +L 
Sbjct: 20 KALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAI---------YLR 70

Query: 77 NVANCSHLLP 86
          +V+  ++LLP
Sbjct: 71 DVSQNTNLLP 80


>sp|Q74Z05|DCP1_ASHGO mRNA-decapping enzyme subunit 1 OS=Ashbya gossypii (strain ATCC
          10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DCP1
          PE=3 SV=1
          Length = 193

 Score = 38.9 bits (89), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 17 KMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKR 67
          K LN  V+ R DP I+++L    H T Y++    N+W++ + +G L +  R
Sbjct: 17 KTLNFNVIGRYDPKIKQLLFHTPHATVYKWEAGENKWNKLEYQGVLAIYLR 67


>sp|A8AY51|EZRA_STRGC Septation ring formation regulator EzrA OS=Streptococcus gordonii
           (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=ezrA
           PE=3 SV=1
          Length = 574

 Score = 29.6 bits (65), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 7   LMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFN---IESNQWSRKDVEGSLF 63
           L+ +L+++  K+ NL V   ++      LI  + VTF E+N   ++ +  S  D+E ++F
Sbjct: 33  LLDSLEERKEKLYNLPVNDEVEAIKNMHLIGQSQVTFREWNQKWVDLSLNSFADIENNIF 92

Query: 64  VVKRFLSFFFFL 75
             + + + F FL
Sbjct: 93  EAEGYNNSFRFL 104


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.334    0.144    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,912,972
Number of Sequences: 539616
Number of extensions: 1151044
Number of successful extensions: 3920
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3909
Number of HSP's gapped (non-prelim): 16
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)