Query 044026
Match_columns 101
No_of_seqs 101 out of 173
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 10:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06058 DCP1: Dcp1-like decap 100.0 5.1E-37 1.1E-41 216.7 3.8 83 14-96 2-86 (122)
2 KOG2868 Decapping enzyme compl 100.0 7E-31 1.5E-35 210.6 6.1 91 6-96 2-94 (335)
3 cd00837 EVH1 EVH1 (Enabled, Va 94.3 0.31 6.8E-06 33.0 6.9 32 38-69 6-38 (104)
4 cd00835 RanBD Ran-binding doma 94.0 0.12 2.6E-06 35.6 4.6 37 38-75 15-53 (122)
5 PF00568 WH1: WH1 domain; Int 94.0 0.24 5.2E-06 33.7 5.9 57 38-94 13-73 (111)
6 PF00638 Ran_BP1: RanBP1 domai 92.6 0.33 7.2E-06 33.0 4.9 36 39-75 15-52 (122)
7 smart00160 RanBD Ran-binding d 91.1 0.54 1.2E-05 33.1 4.7 36 38-74 24-62 (130)
8 KOG4693 Uncharacterized conser 90.4 0.16 3.4E-06 41.9 1.6 22 41-62 105-126 (392)
9 PF09951 DUF2185: Protein of u 76.5 3.7 8E-05 27.6 3.2 36 18-55 50-85 (89)
10 PF01344 Kelch_1: Kelch motif; 75.3 3.8 8.3E-05 22.7 2.6 20 37-56 24-43 (47)
11 PF13964 Kelch_6: Kelch motif 73.8 3.2 6.9E-05 23.7 2.1 20 38-57 25-44 (50)
12 smart00612 Kelch Kelch domain. 71.0 4.3 9.2E-05 21.8 2.1 20 38-57 12-31 (47)
13 PF13418 Kelch_4: Galactose ox 70.1 3.9 8.4E-05 23.1 1.8 18 39-56 27-44 (49)
14 smart00461 WH1 WASP homology r 70.1 25 0.00054 23.8 6.1 27 40-66 10-36 (106)
15 PF13415 Kelch_3: Galactose ox 68.0 4.7 0.0001 23.0 1.9 18 39-56 17-34 (49)
16 cd01205 WASP WASP-type EVH1 do 67.7 17 0.00036 25.3 4.9 32 37-69 8-39 (105)
17 KOG3671 Actin regulatory prote 63.6 3.7 8E-05 36.0 1.2 46 23-69 28-73 (569)
18 PF07646 Kelch_2: Kelch motif; 58.6 9.7 0.00021 21.7 2.1 21 38-58 27-47 (49)
19 PRK10708 hypothetical protein; 52.8 22 0.00048 22.7 3.1 29 59-87 29-60 (62)
20 COG3055 Uncharacterized protei 45.7 12 0.00025 31.6 1.4 20 41-60 113-132 (381)
21 PF14598 PAS_11: PAS domain; P 40.6 1.1E+02 0.0024 20.4 5.4 50 30-79 54-105 (111)
22 PF07193 DUF1408: Protein of u 34.4 31 0.00068 22.6 1.8 17 51-69 37-53 (75)
23 COG2723 BglB Beta-glucosidase/ 32.7 26 0.00056 30.2 1.5 40 6-48 84-125 (460)
24 PRK13511 6-phospho-beta-galact 32.4 27 0.00058 29.4 1.5 31 18-48 87-119 (469)
25 PRK09593 arb 6-phospho-beta-gl 30.5 36 0.00078 28.9 2.0 31 18-48 107-139 (478)
26 PLN02772 guanylate kinase 28.6 42 0.00091 28.3 2.0 21 41-61 51-71 (398)
27 PHA03092 semaphorin-like prote 28.6 50 0.0011 23.9 2.2 33 31-65 32-64 (134)
28 PF10781 DSRB: Dextransucrase 28.4 91 0.002 19.9 3.1 24 59-82 29-53 (62)
29 KOG1747 Protein tyrosine kinas 28.0 88 0.0019 26.1 3.7 45 38-85 231-299 (342)
30 PLN02814 beta-glucosidase 27.9 34 0.00073 29.3 1.4 31 18-48 110-142 (504)
31 PF08077 Cm_res_leader: Chlora 27.4 59 0.0013 15.7 1.6 13 56-68 2-14 (17)
32 PLN02998 beta-glucosidase 26.8 37 0.0008 29.1 1.4 31 18-48 115-147 (497)
33 PLN02849 beta-glucosidase 26.5 45 0.00097 28.6 1.9 39 6-48 104-144 (503)
34 PRK09589 celA 6-phospho-beta-g 23.6 56 0.0012 27.7 1.9 40 18-57 101-148 (476)
35 TIGR01233 lacG 6-phospho-beta- 23.1 34 0.00073 28.9 0.5 31 18-48 86-118 (467)
36 cd02989 Phd_like_TxnDC9 Phosdu 22.2 1E+02 0.0022 20.5 2.6 43 25-67 38-84 (113)
37 PF12673 DUF3794: Domain of un 22.0 74 0.0016 19.5 1.8 32 29-63 1-32 (87)
38 smart00767 DCD DCD is a plant 22.0 74 0.0016 23.2 2.0 40 58-99 3-47 (132)
39 PRK15014 6-phospho-beta-glucos 21.6 69 0.0015 27.2 2.1 31 18-48 103-135 (477)
40 KOG4693 Uncharacterized conser 21.3 43 0.00092 28.0 0.8 21 41-61 268-288 (392)
41 PLN02153 epithiospecifier prot 20.9 66 0.0014 25.0 1.7 19 42-60 218-236 (341)
42 PHA03098 kelch-like protein; P 20.4 1.1E+02 0.0024 25.3 3.0 17 41-57 406-422 (534)
43 PRK10557 hypothetical protein; 20.3 1.5E+02 0.0033 22.1 3.5 33 37-69 86-120 (192)
No 1
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=100.00 E-value=5.1e-37 Score=216.69 Aligned_cols=83 Identities=39% Similarity=0.647 Sum_probs=75.3
Q ss_pred hhhhhccHHHHHhhCcchHHHhhhCCeEEEEeeeCCCCCeeecCceeeEEEEEecC--ceEEEEEecCCCCCcccccccc
Q 044026 14 QSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL--SFFFFLINVANCSHLLPRFFFH 91 (101)
Q Consensus 14 ~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~--~y~~iILNR~~~~n~~e~i~~~ 91 (101)
+++++|||+||||+||+|++|+++|+|||||+||+++++|+|+|+||+||||+|+. +|+++||||+|++||+++|+++
T Consensus 2 ~~~~~lnl~vL~r~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~~i~~~ 81 (122)
T PF06058_consen 2 RTRNELNLRVLQRYDPSIESILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVEPITPD 81 (122)
T ss_dssp HHHHHHHHHHHHHC-TTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEEEE-SG
T ss_pred chHHHHhHHHHhhhCchHHHHHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceeeecCCC
Confidence 57889999999999999999999999999999999999999999999999999987 9999999999999999999999
Q ss_pred eEEEE
Q 044026 92 FYFNF 96 (101)
Q Consensus 92 ~e~~~ 96 (101)
++++.
T Consensus 82 ~~~e~ 86 (122)
T PF06058_consen 82 LDFEL 86 (122)
T ss_dssp GGEEE
T ss_pred cEEEE
Confidence 99874
No 2
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=99.96 E-value=7e-31 Score=210.64 Aligned_cols=91 Identities=34% Similarity=0.596 Sum_probs=84.3
Q ss_pred CCCCCCchhhhhhccHHHHHhhCcchHHHhhhCCeEEEEeeeCCCCCeeecCceeeEEEEEecC--ceEEEEEecCCCCC
Q 044026 6 KLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL--SFFFFLINVANCSH 83 (101)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~--~y~~iILNR~~~~n 83 (101)
+.++......++++||+|||||||+|++||++|+||+||+||...++|+|+||||+||||+|+. +++|+|+||++++|
T Consensus 2 ~~~~~~~~~~~~a~nla~l~r~DP~ik~Ild~ashva~Y~fd~~~~eWnKtdiEGtffvY~R~~~p~~gf~i~NR~~~~n 81 (335)
T KOG2868|consen 2 ENMADELIFRGRALNLAVLQRIDPYIKSILDVASHVALYTFDFGANEWNKTDIEGTFFVYKRDASPRHGFLIVNRLSPDN 81 (335)
T ss_pred cchhHHHHHhhhhhhHHHHhhhCHHHHHHHhhccceeEEEeccccchhhhccceeEEEEEEccCCCccceEeecCCChhh
Confidence 4455555666788999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccccccceEEEE
Q 044026 84 LLPRFFFHFYFNF 96 (101)
Q Consensus 84 ~~e~i~~~~e~~~ 96 (101)
|+++|+++++|++
T Consensus 82 f~e~lt~d~~~~~ 94 (335)
T KOG2868|consen 82 FVEPLTKDLIFQL 94 (335)
T ss_pred hhhhcCCCeeeee
Confidence 9999999999864
No 3
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=94.28 E-value=0.31 Score=32.98 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=28.1
Q ss_pred CCeEEEEeeeCCCCCeeec-CceeeEEEEEecC
Q 044026 38 AAHVTFYEFNIESNQWSRK-DVEGSLFVVKRFL 69 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~-dvEG~LFv~~R~~ 69 (101)
++-|.||.+|+.+++|.+. +..|.+-+++-..
T Consensus 6 ~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~ 38 (104)
T cd00837 6 TAVAQVYTADPSTGKWVPASGGTGAVSLVKDST 38 (104)
T ss_pred EEEEEEEEECCCCCceEECCCCeEEEEEEEECC
Confidence 4678999999999999998 7889999998766
No 4
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=94.01 E-value=0.12 Score=35.62 Aligned_cols=37 Identities=22% Similarity=0.575 Sum_probs=30.4
Q ss_pred CCeEEEEeeeCCCCCeeecCceeeEEEEEecC--ceEEEE
Q 044026 38 AAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL--SFFFFL 75 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~--~y~~iI 75 (101)
...|-||.|+.++++|...|+ |+|-|..... ++++++
T Consensus 15 ~~r~KLy~~~~~~~~WkerG~-G~lki~~~k~~~~~Rivm 53 (122)
T cd00835 15 SVRAKLYRFDDETKEWKERGV-GELKILKHKDTGKYRLLM 53 (122)
T ss_pred EEEeEEEEEcCCCCCCeeceE-EEEEEEEcCCCCcEEEEE
Confidence 456899999999999999998 9999988764 666544
No 5
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=93.96 E-value=0.24 Score=33.72 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=38.6
Q ss_pred CCeEEEEeeeCCCCC-eeecCceeeEEEEEecC--ceEEEEEecCCC-CCcccccccceEE
Q 044026 38 AAHVTFYEFNIESNQ-WSRKDVEGSLFVVKRFL--SFFFFLINVANC-SHLLPRFFFHFYF 94 (101)
Q Consensus 38 as~v~lY~f~~~~~~-WeK~dvEG~LFv~~R~~--~y~~iILNR~~~-~n~~e~i~~~~e~ 94 (101)
++-|-||..|+.++. |.+....|.+-+++-.. .|.+.+..-.+- -=+-..|.+++++
T Consensus 13 ~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y 73 (111)
T PF00568_consen 13 TAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVY 73 (111)
T ss_dssp EEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EE
T ss_pred EEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEE
Confidence 467889999988887 99988889999998776 565555552321 1222356666665
No 6
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=92.58 E-value=0.33 Score=33.00 Aligned_cols=36 Identities=22% Similarity=0.593 Sum_probs=28.3
Q ss_pred CeEEEEeeeCCCCCeeecCceeeEEEEEecC--ceEEEE
Q 044026 39 AHVTFYEFNIESNQWSRKDVEGSLFVVKRFL--SFFFFL 75 (101)
Q Consensus 39 s~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~--~y~~iI 75 (101)
..|-||.|+.++++|...|+ |+|-|.+... ++++++
T Consensus 15 ~r~Kl~~~~~~~~~W~erG~-G~l~i~~~k~~~~~Rlvm 52 (122)
T PF00638_consen 15 VRAKLYRFDKEDKEWKERGV-GTLKILKHKETGKYRLVM 52 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEETTSCEEEEEE
T ss_pred EEEEEEEEeCCCCCccccce-eEEEEEEccCCcceEEEE
Confidence 45999999998899999888 9998887654 554443
No 7
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=91.09 E-value=0.54 Score=33.13 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=29.5
Q ss_pred CCeEEEEeeeCCCCCeeecCceeeEEEEEecC---ceEEE
Q 044026 38 AAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL---SFFFF 74 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~---~y~~i 74 (101)
+..|-||.|+.++++|.-.|+ |.|.|..... +++++
T Consensus 24 ~~r~KL~~~~~~~~~WkerG~-G~lki~~~~~~~~~~Riv 62 (130)
T smart00160 24 SARAKLYRFANDKKEWKERGV-GDLKILKSKDNGGKVRIV 62 (130)
T ss_pred EEEeEEEEEcCCCCCCeeccE-EEEEEEEcCCCCCeEEEE
Confidence 367899999998999999999 9999987653 55554
No 8
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=90.35 E-value=0.16 Score=41.93 Aligned_cols=22 Identities=41% Similarity=0.842 Sum_probs=20.0
Q ss_pred EEEEeeeCCCCCeeecCceeeE
Q 044026 41 VTFYEFNIESNQWSRKDVEGSL 62 (101)
Q Consensus 41 v~lY~f~~~~~~WeK~dvEG~L 62 (101)
-+||.||++++.|.|..|||++
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~v 126 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFV 126 (392)
T ss_pred ceeeeeccccccccccceeeec
Confidence 4799999999999999999963
No 9
>PF09951 DUF2185: Protein of unknown function (DUF2185); InterPro: IPR018689 This domain has no known function.
Probab=76.46 E-value=3.7 Score=27.65 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=29.8
Q ss_pred hccHHHHHhhCcchHHHhhhCCeEEEEeeeCCCCCeee
Q 044026 18 MLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSR 55 (101)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~WeK 55 (101)
-..|+.+-++||.|..|+.. +.-+.|..+..++ |.|
T Consensus 50 i~~ln~i~~idp~i~~ll~~-p~Gt~~er~e~g~-~~~ 85 (89)
T PF09951_consen 50 IVDLNTILNIDPSIIPLLDA-PYGTAFERDEDGE-FYE 85 (89)
T ss_pred EEeHHHHHhhChHHHHHhcC-CCCceEEECCCCC-EEE
Confidence 35799999999999999985 6677888887655 987
No 10
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=75.34 E-value=3.8 Score=22.69 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=17.0
Q ss_pred hCCeEEEEeeeCCCCCeeec
Q 044026 37 TAAHVTFYEFNIESNQWSRK 56 (101)
Q Consensus 37 ~as~v~lY~f~~~~~~WeK~ 56 (101)
......+|.||.++++|++.
T Consensus 24 ~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 24 NQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp SSBEEEEEEEETTTTEEEEE
T ss_pred CceeeeEEEEeCCCCEEEEc
Confidence 45678899999999999974
No 11
>PF13964 Kelch_6: Kelch motif
Probab=73.84 E-value=3.2 Score=23.67 Aligned_cols=20 Identities=15% Similarity=0.327 Sum_probs=16.4
Q ss_pred CCeEEEEeeeCCCCCeeecC
Q 044026 38 AAHVTFYEFNIESNQWSRKD 57 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~d 57 (101)
...-.++.||.++++|++..
T Consensus 25 ~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 25 KYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CccccEEEEcCCCCcEEECC
Confidence 34567999999999999853
No 12
>smart00612 Kelch Kelch domain.
Probab=71.00 E-value=4.3 Score=21.77 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=16.1
Q ss_pred CCeEEEEeeeCCCCCeeecC
Q 044026 38 AAHVTFYEFNIESNQWSRKD 57 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~d 57 (101)
.....++.||+++++|++..
T Consensus 12 ~~~~~v~~yd~~~~~W~~~~ 31 (47)
T smart00612 12 QRLKSVEVYDPETNKWTPLP 31 (47)
T ss_pred ceeeeEEEECCCCCeEccCC
Confidence 34567899999999999754
No 13
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=70.09 E-value=3.9 Score=23.07 Aligned_cols=18 Identities=33% Similarity=0.741 Sum_probs=12.7
Q ss_pred CeEEEEeeeCCCCCeeec
Q 044026 39 AHVTFYEFNIESNQWSRK 56 (101)
Q Consensus 39 s~v~lY~f~~~~~~WeK~ 56 (101)
..--+|.||.++++|++.
T Consensus 27 ~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E---EEEEETTTTEEEE-
T ss_pred ccCCEEEEECCCCEEEEC
Confidence 445689999999999986
No 14
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=70.05 E-value=25 Score=23.76 Aligned_cols=27 Identities=11% Similarity=0.318 Sum_probs=18.7
Q ss_pred eEEEEeeeCCCCCeeecCceeeEEEEE
Q 044026 40 HVTFYEFNIESNQWSRKDVEGSLFVVK 66 (101)
Q Consensus 40 ~v~lY~f~~~~~~WeK~dvEG~LFv~~ 66 (101)
-+++-.|+..++.|.+.+..|.+-+..
T Consensus 10 ~avV~~y~~~~~~W~~~~~gg~~~~~~ 36 (106)
T smart00461 10 RAVVQLYDADTKKWVPTGEGGAANLVI 36 (106)
T ss_pred EEEEEEEeCCCCCeEECCCCCEEEEEE
Confidence 344555566667899999988665555
No 15
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=68.00 E-value=4.7 Score=23.01 Aligned_cols=18 Identities=22% Similarity=0.665 Sum_probs=15.2
Q ss_pred CeEEEEeeeCCCCCeeec
Q 044026 39 AHVTFYEFNIESNQWSRK 56 (101)
Q Consensus 39 s~v~lY~f~~~~~~WeK~ 56 (101)
...-+|.||.++++|++.
T Consensus 17 ~~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 17 RLNDVWVFDLDTNTWTRI 34 (49)
T ss_pred EecCEEEEECCCCEEEEC
Confidence 345689999999999987
No 16
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=67.66 E-value=17 Score=25.29 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=26.6
Q ss_pred hCCeEEEEeeeCCCCCeeecCceeeEEEEEecC
Q 044026 37 TAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL 69 (101)
Q Consensus 37 ~as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~ 69 (101)
.++-|-||.=.++.++|.++ .+|.+-+++-..
T Consensus 8 ~~aVvqlY~a~p~~~~W~~~-~~Gvl~~vkD~~ 39 (105)
T cd01205 8 ATAVVQLYKAYPDPGRWTKT-LTGAVCLVKDNV 39 (105)
T ss_pred EEEEEEEEEecCCCCeeEEE-eEEEEEEEEECC
Confidence 34667899988778999999 999999998655
No 17
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=63.59 E-value=3.7 Score=35.98 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=34.9
Q ss_pred HHHhhCcchHHHhhhCCeEEEEeeeCCCCCeeecCceeeEEEEEecC
Q 044026 23 VLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL 69 (101)
Q Consensus 23 vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~ 69 (101)
.|+++-+. +-..-.++-|-||.=+...++|.|++.-|.|.+++-..
T Consensus 28 ~lf~~lgk-~~~~l~aAVVqLY~a~p~~~~W~~~~~~Gal~lVkD~~ 73 (569)
T KOG3671|consen 28 TLFKLLGK-KCKTLAAAVVQLYKAYPDPNHWNKTGLCGALCLVKDNA 73 (569)
T ss_pred HHHHHhcc-chhhHHHHHHHHHhhcCChhhhccccCceeEEEeeccc
Confidence 45555555 33333455677999998889999999999999998776
No 18
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=58.57 E-value=9.7 Score=21.67 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=16.7
Q ss_pred CCeEEEEeeeCCCCCeeecCc
Q 044026 38 AAHVTFYEFNIESNQWSRKDV 58 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~dv 58 (101)
...-.++.||.++++|++...
T Consensus 27 ~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 27 SSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred cccceeEEEECCCCEEeecCC
Confidence 345678899999999998654
No 19
>PRK10708 hypothetical protein; Provisional
Probab=52.78 E-value=22 Score=22.73 Aligned_cols=29 Identities=17% Similarity=0.341 Sum_probs=23.2
Q ss_pred eeeEEEEEecC-ceEEEEEecCCCCC--cccc
Q 044026 59 EGSLFVVKRFL-SFFFFLINVANCSH--LLPR 87 (101)
Q Consensus 59 EG~LFv~~R~~-~y~~iILNR~~~~n--~~e~ 87 (101)
||++|++.... +-++-..|-.+-.+ |+|+
T Consensus 29 EG~MyLvaL~dYP~GiWFFNE~~~~~G~FVep 60 (62)
T PRK10708 29 EGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEK 60 (62)
T ss_pred CcEEEEEEcCcCCCceEEEeccCCCCceEecc
Confidence 79999999998 88888999887654 5544
No 20
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.73 E-value=12 Score=31.62 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=17.0
Q ss_pred EEEEeeeCCCCCeeecCcee
Q 044026 41 VTFYEFNIESNQWSRKDVEG 60 (101)
Q Consensus 41 v~lY~f~~~~~~WeK~dvEG 60 (101)
-.+|.||+.+++|+|.+..-
T Consensus 113 nd~Y~y~p~~nsW~kl~t~s 132 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRS 132 (381)
T ss_pred eeeEEecCCCChhheecccc
Confidence 46899999999999988643
No 21
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=40.59 E-value=1.1e+02 Score=20.40 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=34.7
Q ss_pred chHHHhhhCCeE-EEEeeeCCCCCeeecCceeeEEEEEecC-ceEEEEEecC
Q 044026 30 FIEEILITAAHV-TFYEFNIESNQWSRKDVEGSLFVVKRFL-SFFFFLINVA 79 (101)
Q Consensus 30 ~I~~Il~~as~v-~lY~f~~~~~~WeK~dvEG~LFv~~R~~-~y~~iILNR~ 79 (101)
..++++....-+ ..|.|-...++|-....++.+|.-..+. .-.++-.|+.
T Consensus 54 ~~~~~~~~g~~~~~~yR~~~k~g~~vwvqt~~~~~~n~~~~~~~~Iv~~n~v 105 (111)
T PF14598_consen 54 HHREVLQKGQSVSPYYRFRTKNGGYVWVQTKATLFYNPWTSKPEFIVCTNTV 105 (111)
T ss_dssp HHHHHHHHSSEEEEEEEEE-TTSSEEEEEEEEEEEEETTTTCEEEEEEEEEE
T ss_pred HHHHHhhCCCcCcceEEEEecCCcEEEEEEEEEEEECCCCCCccEEEEEEEE
Confidence 344555555434 4899999999999999999999865555 3345557764
No 22
>PF07193 DUF1408: Protein of unknown function (DUF1408); InterPro: IPR009848 This entry is represented by Bacteriophage bIL285, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Lactococcus lactis and related phage proteins of around 75 residues in length. The function of this family is unknown.
Probab=34.38 E-value=31 Score=22.63 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=14.0
Q ss_pred CCeeecCceeeEEEEEecC
Q 044026 51 NQWSRKDVEGSLFVVKRFL 69 (101)
Q Consensus 51 ~~WeK~dvEG~LFv~~R~~ 69 (101)
..|++.| |+||+.+|+.
T Consensus 37 ~t~~r~d--gs~y~~~r~~ 53 (75)
T PF07193_consen 37 ETWERPD--GSMYMTSRKK 53 (75)
T ss_pred EEEEcCC--CeEEEEEccc
Confidence 4699865 9999999885
No 23
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=32.68 E-value=26 Score=30.18 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=33.1
Q ss_pred CCCCCCchhhhhhccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 6 KLMPNLDQQSTKMLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
++.|+-+. .+.|-..|+-+|.-|.+++..- +.|+||+||.
T Consensus 84 RIfP~g~~---~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~ 125 (460)
T COG2723 84 RIFPNGDG---GEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDL 125 (460)
T ss_pred EeecCCCC---CCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 35565543 2689999999999999999876 9999999996
No 24
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=32.44 E-value=27 Score=29.42 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=28.5
Q ss_pred hccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 18 MLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
..|-..|+.+|.-|.+++..- +.|+||+||.
T Consensus 87 ~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dl 119 (469)
T PRK13511 87 EVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDT 119 (469)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 589999999999999999765 9999999996
No 25
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=30.48 E-value=36 Score=28.87 Aligned_cols=31 Identities=23% Similarity=0.120 Sum_probs=28.6
Q ss_pred hccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 18 MLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
..|-..|+.++.-|..++..- +.|+||+||.
T Consensus 107 ~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dl 139 (478)
T PRK09593 107 EPNEAGLQFYEDIFKECHKYGIEPLVTITHFDC 139 (478)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 489999999999999999876 9999999996
No 26
>PLN02772 guanylate kinase
Probab=28.63 E-value=42 Score=28.35 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=19.2
Q ss_pred EEEEeeeCCCCCeeecCceee
Q 044026 41 VTFYEFNIESNQWSRKDVEGS 61 (101)
Q Consensus 41 v~lY~f~~~~~~WeK~dvEG~ 61 (101)
-.||-||..++.|.+..|.|+
T Consensus 51 ~~v~i~D~~t~~W~~P~V~G~ 71 (398)
T PLN02772 51 IGVQILDKITNNWVSPIVLGT 71 (398)
T ss_pred ceEEEEECCCCcEecccccCC
Confidence 479999999999999999885
No 27
>PHA03092 semaphorin-like protein; Provisional
Probab=28.59 E-value=50 Score=23.91 Aligned_cols=33 Identities=18% Similarity=0.482 Sum_probs=26.8
Q ss_pred hHHHhhhCCeEEEEeeeCCCCCeeecCceeeEEEE
Q 044026 31 IEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVV 65 (101)
Q Consensus 31 I~~Il~~as~v~lY~f~~~~~~WeK~dvEG~LFv~ 65 (101)
|.++|++...-++|+|+. ++-.|++.-.+=||-
T Consensus 32 iddvlytgvngavytfsn--n~lnktglan~nyit 64 (134)
T PHA03092 32 IDDVLYTGVNGAVYTFSN--NKLNKTGLANTNYIT 64 (134)
T ss_pred hhhhhccccCceEEEecC--CccccccccccceEE
Confidence 678999999999999996 888888766655554
No 28
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=28.36 E-value=91 Score=19.94 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=20.0
Q ss_pred eeeEEEEEecC-ceEEEEEecCCCC
Q 044026 59 EGSLFVVKRFL-SFFFFLINVANCS 82 (101)
Q Consensus 59 EG~LFv~~R~~-~y~~iILNR~~~~ 82 (101)
||++|++.... +-++-..|-.+-.
T Consensus 29 EG~MYLvaL~dYP~GiWFFNE~~~~ 53 (62)
T PF10781_consen 29 EGTMYLVALEDYPAGIWFFNEKDSP 53 (62)
T ss_pred CcEEEEEEcCcCCcceEEEecCCCC
Confidence 79999999988 8888888877643
No 29
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=27.97 E-value=88 Score=26.11 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=33.9
Q ss_pred CCeEEEEeeeCCCCCeeecCceeeEEEEEecC------------------------ceEEEEEecCCCCCcc
Q 044026 38 AAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL------------------------SFFFFLINVANCSHLL 85 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~------------------------~y~~iILNR~~~~n~~ 85 (101)
.+.=++|.|+ ..|++...|-.+|||+--. .+++.|-+....++..
T Consensus 231 ~prY~ff~~~---ht~eGD~~es~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~ 299 (342)
T KOG1747|consen 231 GPRYHFFLFK---HTHEGDPLESIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGA 299 (342)
T ss_pred CCceEEEecc---cccCCCCceeEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHH
Confidence 4556788888 5799999999999997432 6778887776665543
No 30
>PLN02814 beta-glucosidase
Probab=27.89 E-value=34 Score=29.35 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=28.8
Q ss_pred hccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 18 MLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
+.|-..|+.++.-|.+++..- +.|+||+||.
T Consensus 110 ~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl 142 (504)
T PLN02814 110 LINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL 142 (504)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 689999999999999999876 9999999996
No 31
>PF08077 Cm_res_leader: Chloramphenicol resistance gene leader peptide; InterPro: IPR012537 This family consists of chloramphenicol (Cm) resistance gene leader peptides. Inducible resistance to Cm in both Gram-positive and Gram-negative bacteria is controlled by translation attenuation. In translation attenuation, the ribosome-binding-site (RBS) for the resistance determinant is sequestered in a secondary structure domain within the mRNA. Preceding the secondary structure is a short, translated ORF termed the leader. Ribosome stalling in the leader causes the destabilisation of the downstream secondary structure, allowing initiation of translation of the Cm resistance gene [].
Probab=27.37 E-value=59 Score=15.72 Aligned_cols=13 Identities=46% Similarity=0.537 Sum_probs=10.5
Q ss_pred cCceeeEEEEEec
Q 044026 56 KDVEGSLFVVKRF 68 (101)
Q Consensus 56 ~dvEG~LFv~~R~ 68 (101)
.++-|.|-++.|.
T Consensus 2 sgvpgalavvtrr 14 (17)
T PF08077_consen 2 SGVPGALAVVTRR 14 (17)
T ss_pred CCCCceEEEEEEe
Confidence 3678999999886
No 32
>PLN02998 beta-glucosidase
Probab=26.82 E-value=37 Score=29.08 Aligned_cols=31 Identities=29% Similarity=0.496 Sum_probs=28.6
Q ss_pred hccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 18 MLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
+.|-..|+.++--|.+++..- +.|+||+||.
T Consensus 115 ~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dl 147 (497)
T PLN02998 115 PINPKGLQYYNNLIDELITHGIQPHVTLHHFDL 147 (497)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 589999999999999999876 9999999996
No 33
>PLN02849 beta-glucosidase
Probab=26.49 E-value=45 Score=28.61 Aligned_cols=39 Identities=31% Similarity=0.511 Sum_probs=32.2
Q ss_pred CCCCCCchhhhhhccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 6 KLMPNLDQQSTKMLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
++.|.-+ .+.|-..|+.++.-|.+++..- +.|+||+||.
T Consensus 104 RI~P~G~----g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dl 144 (503)
T PLN02849 104 RLIPNGR----GSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDH 144 (503)
T ss_pred hcCcCCC----CCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCC
Confidence 3556432 3589999999999999999866 9999999996
No 34
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=23.63 E-value=56 Score=27.72 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=32.8
Q ss_pred hccHHHHHhhCcchHHHhhhC--CeEEEEeeeCC-----C-CCeeecC
Q 044026 18 MLNLTVLQRIDPFIEEILITA--AHVTFYEFNIE-----S-NQWSRKD 57 (101)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~~-----~-~~WeK~d 57 (101)
..|-..|+.++.-|.+++..- +.|+||+||.- . +.|...+
T Consensus 101 ~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~ 148 (476)
T PRK09589 101 EPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRK 148 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChH
Confidence 479999999999999999876 99999999952 2 6666543
No 35
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=23.13 E-value=34 Score=28.89 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=28.6
Q ss_pred hccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 18 MLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
+.|-..|+.++.-|.+++..- +.|+||+||.
T Consensus 86 ~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dl 118 (467)
T TIGR01233 86 EVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDT 118 (467)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCC
Confidence 589999999999999999865 9999999996
No 36
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=22.16 E-value=1e+02 Score=20.51 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=31.3
Q ss_pred HhhCcchHHHhhhCCeEEEEeeeCCCCC--eeecCcee--eEEEEEe
Q 044026 25 QRIDPFIEEILITAAHVTFYEFNIESNQ--WSRKDVEG--SLFVVKR 67 (101)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~lY~f~~~~~~--WeK~dvEG--~LFv~~R 67 (101)
++.+|.++++...-+.+.+|+-|.+.+. |++-+|.+ ++.+|+.
T Consensus 38 ~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~ 84 (113)
T cd02989 38 KIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKN 84 (113)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEEC
Confidence 5667788888877778899999987664 77777776 4555543
No 37
>PF12673 DUF3794: Domain of unknown function (DUF3794); InterPro: IPR024300 This presumed domain is functionally uncharacterised. It is found in bacteria, and is approximately 90 amino acids in length.
Probab=22.00 E-value=74 Score=19.53 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=24.3
Q ss_pred cchHHHhhhCCeEEEEeeeCCCCCeeecCceeeEE
Q 044026 29 PFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLF 63 (101)
Q Consensus 29 p~I~~Il~~as~v~lY~f~~~~~~WeK~dvEG~LF 63 (101)
|.|.+|+..-..+.+-......+ |--++|.+.
T Consensus 1 P~I~~Il~~~~~v~i~~~~v~~~---kv~v~G~l~ 32 (87)
T PF12673_consen 1 PDIEKILSSDAEVKITEIKVIDD---KVIVEGELN 32 (87)
T ss_pred CChHhEEEeeeEEEEEEEEEECC---EEEEEEEEE
Confidence 77888988888888877765444 667888765
No 38
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=22.00 E-value=74 Score=23.17 Aligned_cols=40 Identities=10% Similarity=0.193 Sum_probs=28.3
Q ss_pred ceeeEEEEEecC-----ceEEEEEecCCCCCcccccccceEEEEeEe
Q 044026 58 VEGSLFVVKRFL-----SFFFFLINVANCSHLLPRFFFHFYFNFVFD 99 (101)
Q Consensus 58 vEG~LFv~~R~~-----~y~~iILNR~~~~n~~e~i~~~~e~~~~~~ 99 (101)
.-|..|+|..++ +++++=|.+.. .++++.|.++.-+ |+||
T Consensus 3 lgG~IF~Cn~~T~~Ecf~~~lFGLP~~~-~~~V~~IkpG~~L-FLfn 47 (132)
T smart00767 3 LGGYIFMCNNDTKEECFRRQLFGLPRGY-RDFVRNIKPGLPL-FLYN 47 (132)
T ss_pred cceEEEEeCCCCHHHHHhcccccCChhh-hhhhheeCCCCEE-EEEe
Confidence 458899998887 77788787544 4478888887654 4443
No 39
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=21.57 E-value=69 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=28.6
Q ss_pred hccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 18 MLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
..|-..|+.+|.-|..++..- +.|+||+||.
T Consensus 103 ~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (477)
T PRK15014 103 QPNEEGLKFYDDMFDELLKYNIEPVITLSHFEM 135 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 479999999999999999876 9999999996
No 40
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=21.30 E-value=43 Score=27.97 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=18.3
Q ss_pred EEEEeeeCCCCCeeecCceee
Q 044026 41 VTFYEFNIESNQWSRKDVEGS 61 (101)
Q Consensus 41 v~lY~f~~~~~~WeK~dvEG~ 61 (101)
--||.||+.+.-|.+-.+.|.
T Consensus 268 ndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 268 NDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred cceeecccccchheeeeccCC
Confidence 358999999999999888885
No 41
>PLN02153 epithiospecifier protein
Probab=20.88 E-value=66 Score=25.01 Aligned_cols=19 Identities=21% Similarity=0.517 Sum_probs=15.4
Q ss_pred EEEeeeCCCCCeeecCcee
Q 044026 42 TFYEFNIESNQWSRKDVEG 60 (101)
Q Consensus 42 ~lY~f~~~~~~WeK~dvEG 60 (101)
.+|.||.++++|++....|
T Consensus 218 ~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 218 AVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ceEEEEcCCCcEEeccccC
Confidence 5899999999999865434
No 42
>PHA03098 kelch-like protein; Provisional
Probab=20.37 E-value=1.1e+02 Score=25.28 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=14.3
Q ss_pred EEEEeeeCCCCCeeecC
Q 044026 41 VTFYEFNIESNQWSRKD 57 (101)
Q Consensus 41 v~lY~f~~~~~~WeK~d 57 (101)
-.++.||+.+++|++..
T Consensus 406 ~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 406 KTVECFSLNTNKWSKGS 422 (534)
T ss_pred ceEEEEeCCCCeeeecC
Confidence 56899999999999753
No 43
>PRK10557 hypothetical protein; Provisional
Probab=20.34 E-value=1.5e+02 Score=22.07 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=24.1
Q ss_pred hCCeEEEEeeeCCC-CCeee-cCceeeEEEEEecC
Q 044026 37 TAAHVTFYEFNIES-NQWSR-KDVEGSLFVVKRFL 69 (101)
Q Consensus 37 ~as~v~lY~f~~~~-~~WeK-~dvEG~LFv~~R~~ 69 (101)
....|.+|.||... +.|++ .+.|-..|.|+.+.
T Consensus 86 ~~~sCi~~~YD~n~nG~~~~~~~~~~e~~gyrl~~ 120 (192)
T PRK10557 86 AQGSCLIVAWDLNSNGRWEGAPHKESEQFGYRLRN 120 (192)
T ss_pred CCCCeEEEEEcCCCCCcccCCCCCccceEEEEecC
Confidence 36788999999654 45997 45566689998665
Done!