Query 044026
Match_columns 101
No_of_seqs 101 out of 173
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lyd_A Decapping protein 1; DC 100.0 4.4E-37 1.5E-41 219.3 5.4 85 12-96 9-95 (134)
2 2qkl_A DCP1 protein, SPBC3B9.2 100.0 5.4E-37 1.9E-41 217.3 3.5 83 14-96 6-89 (127)
3 1q67_A Decapping protein invol 100.0 1.1E-29 3.8E-34 194.1 5.3 76 15-90 18-159 (231)
4 1xke_A RAN-binding protein 2; 91.8 0.28 9.6E-06 33.6 4.9 34 39-73 13-48 (130)
5 1rrp_B Nuclear pore complex pr 91.7 0.28 9.7E-06 33.6 4.9 35 39-74 27-63 (134)
6 4hat_B RAN-specific GTPase-act 91.2 0.4 1.4E-05 33.5 5.2 35 38-73 27-63 (140)
7 3n7c_A ABR034WP; nuclear pore 89.4 0.54 1.8E-05 32.4 4.6 35 39-74 16-53 (130)
8 3m1i_B RAN-specific GTPase-act 89.2 0.66 2.3E-05 34.3 5.2 35 38-73 78-114 (191)
9 1qc6_A EVH1 domain from ENA/VA 87.7 1 3.5E-05 30.7 5.1 24 38-62 8-31 (130)
10 2crf_A RAN binding protein 3; 86.4 1.1 3.7E-05 31.4 4.8 29 39-68 32-60 (150)
11 2y8g_A Ranbp3-B, RAN-binding p 85.2 1.2 4E-05 30.8 4.4 29 39-68 20-48 (138)
12 1evh_A WH1 domain, protein (ME 84.7 1.2 3.9E-05 29.9 4.0 32 38-69 8-42 (112)
13 1egx_A VAsp, vasodilator-stimu 83.5 1.1 3.8E-05 30.1 3.5 32 38-69 8-43 (115)
14 1k5d_B RAN-specific GTPase-act 83.3 1.7 5.7E-05 32.2 4.7 35 39-74 51-89 (201)
15 1ddw_A GLGF-domain protein hom 77.0 5.1 0.00017 27.1 5.1 37 38-74 8-48 (120)
16 2ec1_A Nucleoporin 50 kDa; ran 69.6 21 0.00071 24.0 6.8 39 39-80 18-57 (125)
17 1i2h_A PSD-ZIP45(homer-1C/VESL 60.8 15 0.00051 26.5 4.9 37 38-74 13-53 (168)
18 4dny_A Metalloprotease STCE; m 47.6 39 0.0014 23.3 5.2 71 20-99 33-113 (126)
19 1xod_A Spred1; sprouty, EVH1, 45.7 21 0.0007 23.9 3.4 30 38-67 8-39 (118)
20 2jp2_A Spred-2, sprouty-relate 40.3 34 0.0012 23.2 3.9 31 37-67 16-48 (126)
21 4a3y_A Raucaffricine-O-beta-D- 27.6 25 0.00084 29.0 1.7 32 17-48 110-143 (540)
22 1mke_A WIP - N-WAsp, fusion pr 26.8 97 0.0033 21.7 4.5 30 38-69 45-74 (152)
23 3vii_A Beta-glucosidase; cellu 23.9 31 0.0011 28.2 1.6 32 17-48 99-132 (487)
24 3gnp_A OS03G0212800 protein; b 23.6 28 0.00096 28.4 1.3 32 17-48 102-135 (488)
25 3ptm_A Beta-glucosidase OS4BGl 21.4 36 0.0012 28.0 1.5 32 17-48 122-155 (505)
26 4dde_A 6-phospho-beta-glucosid 20.8 39 0.0013 27.5 1.7 32 17-48 103-136 (480)
27 3ta9_A Glycoside hydrolase fam 20.5 37 0.0013 27.5 1.5 32 17-48 98-131 (458)
28 2dbc_A PDCL2, unnamed protein 20.1 96 0.0033 19.5 3.2 41 25-66 46-88 (135)
No 1
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=100.00 E-value=4.4e-37 Score=219.34 Aligned_cols=85 Identities=29% Similarity=0.559 Sum_probs=81.4
Q ss_pred chhhhhhccHHHHHhhCcchHHHhhhCCeEEEEeeeCCCCCeeecCceeeEEEEEecC--ceEEEEEecCCCCCcccccc
Q 044026 12 DQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL--SFFFFLINVANCSHLLPRFF 89 (101)
Q Consensus 12 ~~~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~--~y~~iILNR~~~~n~~e~i~ 89 (101)
.++++.+|||+||||+||+|++||++|+||+||+||+++++|+|+|+||+||||+|+. +|+|+||||+|++||+++|+
T Consensus 9 ~~~~~~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~~P~~~~ivLNR~~~~n~~~~l~ 88 (134)
T 2lyd_A 9 ADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAEPFHSIFINNRLNTTSFVEPIT 88 (134)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSSSSSEEEEEEETTTTEEEEEECC
T ss_pred ChHHHHhhhHHHHhhhCcHHHHHHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccCCCceEEEEEcCCCCcceeEEcC
Confidence 4577788999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred cceEEEE
Q 044026 90 FHFYFNF 96 (101)
Q Consensus 90 ~~~e~~~ 96 (101)
++++++.
T Consensus 89 ~~~~~e~ 95 (134)
T 2lyd_A 89 GSLELQS 95 (134)
T ss_dssp SSCEEEE
T ss_pred CCcEEEe
Confidence 9999975
No 2
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=100.00 E-value=5.4e-37 Score=217.34 Aligned_cols=83 Identities=27% Similarity=0.411 Sum_probs=73.8
Q ss_pred hhhhhccHHHHHhhCcchHHHhhhCCeEEEEeeeCCCCCeeecCceeeEEEEEecC-ceEEEEEecCCCCCcccccccce
Q 044026 14 QSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL-SFFFFLINVANCSHLLPRFFFHF 92 (101)
Q Consensus 14 ~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~-~y~~iILNR~~~~n~~e~i~~~~ 92 (101)
..++++||+||||+||+|++|+++|+|||||+||+++++|+|+||||+||||+|+. +|+|+||||+|++||+++|++++
T Consensus 6 ~~r~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEGtLFv~~R~~P~~~~iVlNR~~~~n~~~~i~~~~ 85 (127)
T 2qkl_A 6 ILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQRARVGYVILNRNSPENLYLFINHPS 85 (127)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEEEEEEECC------CCEEEEEEEEEEEEETTCCEEEEEEESSSSCCEEEEECSGG
T ss_pred HHHHHhHHHHHhhhCchHHHHhccCCeEEEEEecCCCCceEEcCcEEEEEEEEccCCceEEEEEcCCCCcCeeEecCCCc
Confidence 46788999999999999999999999999999999999999999999999999996 99999999999999999999999
Q ss_pred EEEE
Q 044026 93 YFNF 96 (101)
Q Consensus 93 e~~~ 96 (101)
+++.
T Consensus 86 ~~e~ 89 (127)
T 2qkl_A 86 NVHL 89 (127)
T ss_dssp GEEE
T ss_pred eEEE
Confidence 9874
No 3
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=99.96 E-value=1.1e-29 Score=194.10 Aligned_cols=76 Identities=22% Similarity=0.481 Sum_probs=69.4
Q ss_pred hhhhccHHHHHhhCcchHHHhhhCCeEEEEeeeCCCCCeeecCceeeEEEEEecC-------------------------
Q 044026 15 STKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL------------------------- 69 (101)
Q Consensus 15 ~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~------------------------- 69 (101)
-|++|||+||+|+||+|++||++|+||+||+||.++++|+|+++||+||||.|+.
T Consensus 18 yRkaLNlnVL~RyDP~IkqIL~~t~hasvYkfd~~~~eW~K~~~eG~LfIy~Rd~~p~~~~l~~s~~~~~~~~~~~~~~~ 97 (231)
T 1q67_A 18 YRKALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQNTNLLPVSPQEVDIFDSQNGSNN 97 (231)
T ss_dssp ----CCHHHHHHHCTTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECCC------------------------
T ss_pred HHHHhHHHHHHhhChhHHHHHhcCCeEEEEEecCCCCceEecCcEEEEEEEEecCCCCccccCcccccccchhccccccc
Confidence 3689999999999999999999999999999999999999999999999999953
Q ss_pred -----------------------------------------ceEEEEEecCCCCCccccccc
Q 044026 70 -----------------------------------------SFFFFLINVANCSHLLPRFFF 90 (101)
Q Consensus 70 -----------------------------------------~y~~iILNR~~~~n~~e~i~~ 90 (101)
+||||||||++++||+++|+|
T Consensus 98 ~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~~~d~y~yglIILNR~npeNfs~~I~p 159 (231)
T 1q67_A 98 IQVNNGSDNSNRNSSGNGNSYKSNDSLTYNCGKTLSGKDIYNYGLIILNRINPDNFSMGIVP 159 (231)
T ss_dssp -------------------------------------CCCCSEEEEEEESSSSCEEEEEECC
T ss_pred cccccccccccccccccccccccccccccccccccccccccceeEEEEecCCcccceeeccc
Confidence 399999999999999999995
No 4
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=91.78 E-value=0.28 Score=33.56 Aligned_cols=34 Identities=24% Similarity=0.592 Sum_probs=27.5
Q ss_pred CeEEEEeeeCCCCCeeecCceeeEEEEEecC--ceEE
Q 044026 39 AHVTFYEFNIESNQWSRKDVEGSLFVVKRFL--SFFF 73 (101)
Q Consensus 39 s~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~--~y~~ 73 (101)
..|-||.||.++++|.-.|+ |.|-|.+... ++++
T Consensus 13 ~raKL~~~~~~~~~WkERG~-G~lkil~~k~~~k~Rl 48 (130)
T 1xke_A 13 QRVKLFRFDAEVSQWKERGL-GNLKILKNEVNGKLRM 48 (130)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEETTSSCEEE
T ss_pred EEEEEEEEcCCCCCcccCcE-EEEEEEEcCCCCeEEE
Confidence 46899999998999999998 9999987543 4444
No 5
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=91.71 E-value=0.28 Score=33.64 Aligned_cols=35 Identities=14% Similarity=0.579 Sum_probs=27.8
Q ss_pred CeEEEEeeeCCCCCeeecCceeeEEEEEecC--ceEEE
Q 044026 39 AHVTFYEFNIESNQWSRKDVEGSLFVVKRFL--SFFFF 74 (101)
Q Consensus 39 s~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~--~y~~i 74 (101)
..|-||.||.++++|...|+ |.|-|.+... +++++
T Consensus 27 ~raKL~~~~~~~~~WkerG~-G~lkil~~k~~~k~Rlv 63 (134)
T 1rrp_B 27 NRAKLFRFDVESKEWKERGI-GNVKILRHKTSGKIRLL 63 (134)
T ss_dssp EEEEEEEECSSSSCEEEEEE-EEEEEEEESSSCCCEEE
T ss_pred EEEEEEEEcccCCCcccCcE-EEEEEEEECCCCeEEEE
Confidence 56899999988999999998 9999886443 44443
No 6
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=91.20 E-value=0.4 Score=33.54 Aligned_cols=35 Identities=11% Similarity=0.375 Sum_probs=27.7
Q ss_pred CCeEEEEeeeCCCCCeeecCceeeEEEEEecC--ceEE
Q 044026 38 AAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL--SFFF 73 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~--~y~~ 73 (101)
+..|-||.|+.++++|...|+ |.|-|.+... ++++
T Consensus 27 ~~raKLf~f~~~~~~WkerG~-G~lkilk~k~~~k~Rl 63 (140)
T 4hat_B 27 KVRAKLFRFDKDAKEWKERGT-GDCKFLKNKKTNKVRI 63 (140)
T ss_dssp EEEEEEEEEETTTTEEEEEEE-EEEEEEEETTTCCEEE
T ss_pred EEeEEEEEEcCCCCCcccccE-EEEEEEEcCCCCeEEE
Confidence 346899999988899999988 9999976443 5553
No 7
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=89.39 E-value=0.54 Score=32.36 Aligned_cols=35 Identities=11% Similarity=0.319 Sum_probs=25.3
Q ss_pred CeEEEEeeeCCCCCeeecCceeeEEEEEec--C-ceEEE
Q 044026 39 AHVTFYEFNIESNQWSRKDVEGSLFVVKRF--L-SFFFF 74 (101)
Q Consensus 39 s~v~lY~f~~~~~~WeK~dvEG~LFv~~R~--~-~y~~i 74 (101)
..|-||.||.++++|...|+ |+|-|.+.. . +++++
T Consensus 16 ~raKL~~f~~~~~~WkerG~-G~lkil~~k~~~~k~Rll 53 (130)
T 3n7c_A 16 EKAKLLIFDSDTKGYTSRGV-GELKLLRKKDDKGKVRVL 53 (130)
T ss_dssp EEEEEEEECC---CEEEEEE-EEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEeCCCCCchhcce-EEEEEEEecCCCCEEEEE
Confidence 46899999998899999987 999998754 2 56643
No 8
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=89.24 E-value=0.66 Score=34.29 Aligned_cols=35 Identities=11% Similarity=0.387 Sum_probs=28.4
Q ss_pred CCeEEEEeeeCCCCCeeecCceeeEEEEEecC--ceEE
Q 044026 38 AAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL--SFFF 73 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~--~y~~ 73 (101)
...|-||.|+..+++|.-.|+ |.|-|.+... ++++
T Consensus 78 ~~RaKLf~f~~~~~~WKERGv-G~lkilk~ket~k~Rl 114 (191)
T 3m1i_B 78 KVRAKLFRFDADAKEWKERGT-GDCKFLKNKKTNKVRI 114 (191)
T ss_dssp EEEEEEEEEETTTTEEEEEEE-EEEEEEEETTTCCEEE
T ss_pred EEeeEEEEEecCCCCccceeE-EEEEEEEcCCCCeEEE
Confidence 357999999988899999998 9999977543 5554
No 9
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=87.72 E-value=1 Score=30.69 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=17.7
Q ss_pred CCeEEEEeeeCCCCCeeecCceeeE
Q 044026 38 AAHVTFYEFNIESNQWSRKDVEGSL 62 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~dvEG~L 62 (101)
++-|.||.+|+++++|.+.+ .|.+
T Consensus 8 ~~~A~V~~~d~~~~~W~~~g-~G~~ 31 (130)
T 1qc6_A 8 QARASVMVYDDTSKKWVPIK-PGQQ 31 (130)
T ss_dssp EEEEEEEEEETTTTEEEECC-----
T ss_pred EEEEEEEEECCCCCceeECC-CCce
Confidence 35688999999999999998 6744
No 10
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=86.43 E-value=1.1 Score=31.44 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=25.2
Q ss_pred CeEEEEeeeCCCCCeeecCceeeEEEEEec
Q 044026 39 AHVTFYEFNIESNQWSRKDVEGSLFVVKRF 68 (101)
Q Consensus 39 s~v~lY~f~~~~~~WeK~dvEG~LFv~~R~ 68 (101)
..|-||.||..+++|...|+ |+|-|....
T Consensus 32 ~raKL~~fd~~~~~WkERG~-G~lkil~~k 60 (150)
T 2crf_A 32 MQCKLFVFDKTSQSWVERGR-GLLRLNDMA 60 (150)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEEE
T ss_pred EEeEEEEEcCCCCCccccee-EEEEEEecc
Confidence 46999999998999999987 999998753
No 11
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=85.24 E-value=1.2 Score=30.84 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=25.2
Q ss_pred CeEEEEeeeCCCCCeeecCceeeEEEEEec
Q 044026 39 AHVTFYEFNIESNQWSRKDVEGSLFVVKRF 68 (101)
Q Consensus 39 s~v~lY~f~~~~~~WeK~dvEG~LFv~~R~ 68 (101)
..|-||.|+..+++|...|+ |.|-|....
T Consensus 20 ~raKL~~f~~~~~~WkERG~-G~lkil~~k 48 (138)
T 2y8g_A 20 MQCKLFVFDKTSQSWVAVGR-GLLRLNDMA 48 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEEE
T ss_pred EEeEEEEEecCCCCchhceE-EEEEEEEec
Confidence 46889999998899999998 999998753
No 12
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=84.75 E-value=1.2 Score=29.88 Aligned_cols=32 Identities=9% Similarity=0.202 Sum_probs=26.0
Q ss_pred CCeEEEEeeeCCCCCeeecCce-ee--EEEEEecC
Q 044026 38 AAHVTFYEFNIESNQWSRKDVE-GS--LFVVKRFL 69 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~dvE-G~--LFv~~R~~ 69 (101)
++-|.||.+|+.++.|.+.+-. |. +-+|+..+
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~ 42 (112)
T 1evh_A 8 QARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTG 42 (112)
T ss_dssp EEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCceEECCCCCCceEEEEEEECC
Confidence 4678999999999999999864 43 77888766
No 13
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=83.46 E-value=1.1 Score=30.12 Aligned_cols=32 Identities=6% Similarity=0.193 Sum_probs=26.6
Q ss_pred CCeEEEEeeeCCCCCeeecCc--ee--eEEEEEecC
Q 044026 38 AAHVTFYEFNIESNQWSRKDV--EG--SLFVVKRFL 69 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~dv--EG--~LFv~~R~~ 69 (101)
++-|.||.+|+.++.|.+.+. +| ++-+|+-..
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~ 43 (115)
T 1egx_A 8 SSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPT 43 (115)
T ss_dssp EEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCC
Confidence 467889999999999999886 67 488888766
No 14
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=83.30 E-value=1.7 Score=32.15 Aligned_cols=35 Identities=11% Similarity=0.395 Sum_probs=27.5
Q ss_pred CeEEEEee--eCCCCCeeecCceeeEEEEEecC--ceEEE
Q 044026 39 AHVTFYEF--NIESNQWSRKDVEGSLFVVKRFL--SFFFF 74 (101)
Q Consensus 39 s~v~lY~f--~~~~~~WeK~dvEG~LFv~~R~~--~y~~i 74 (101)
..|-||.| +..+++|.-.|+ |.|-|.+... +++|+
T Consensus 51 ~RaKLf~f~~d~~~~~WKERGv-G~lkIlk~k~t~k~Rlv 89 (201)
T 1k5d_B 51 MRAKLFRFASENDLPEWKERGT-GDVKLLKHKEKGAIRLL 89 (201)
T ss_dssp EEEEEEEECCTTSSCCEEEEEE-EEEEEEECSSSCCEEEE
T ss_pred EeeeEEEecccccCCCccccce-EEEEEEEcCCCCcEEEE
Confidence 46899999 777899999998 9999986543 55443
No 15
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=76.96 E-value=5.1 Score=27.14 Aligned_cols=37 Identities=3% Similarity=0.155 Sum_probs=26.1
Q ss_pred CCeEEEEeeeCCCC-CeeecC-ceeeEEEEEecC--ceEEE
Q 044026 38 AAHVTFYEFNIESN-QWSRKD-VEGSLFVVKRFL--SFFFF 74 (101)
Q Consensus 38 as~v~lY~f~~~~~-~WeK~d-vEG~LFv~~R~~--~y~~i 74 (101)
++-|.||.+|+.++ .|.+.+ -.|.+-+|.... .|+++
T Consensus 8 ~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d~~~~~yRIv 48 (120)
T 1ddw_A 8 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRII 48 (120)
T ss_dssp EEEEEEEEECTTTSCSEEESCSSCEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEEEcCCCCCceEeCCCCceEEEEEEcCCCCEEEEE
Confidence 35789999999885 999954 236666776665 45554
No 16
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.59 E-value=21 Score=23.98 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=28.9
Q ss_pred CeEEEEeeeCCCCCeeecCceeeEEEEEecC-ceEEEEEecCC
Q 044026 39 AHVTFYEFNIESNQWSRKDVEGSLFVVKRFL-SFFFFLINVAN 80 (101)
Q Consensus 39 s~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~-~y~~iILNR~~ 80 (101)
..|-||.|+. ++|.-.|+ |+|-|-.... ++++++=+..+
T Consensus 18 ~raKLf~~~~--~~WkERGv-G~lki~~~k~~k~RllmR~d~~ 57 (125)
T 2ec1_A 18 KKCKLFYKKD--NEFKEKGI-GTLHLKPTANQKTQLLVRADTN 57 (125)
T ss_dssp EEEEEEEECS--SSEEEEEE-EEEEEEECSSSSEEEEEEESSS
T ss_pred EeeEEEEecC--CCcccccE-EEEEeeecCCCcEEEEEEecCC
Confidence 5688999965 89999998 9999965434 77766655443
No 17
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=60.80 E-value=15 Score=26.47 Aligned_cols=37 Identities=3% Similarity=0.158 Sum_probs=25.4
Q ss_pred CCeEEEEeeeCCCC-CeeecCc-eeeEEEEEecC--ceEEE
Q 044026 38 AAHVTFYEFNIESN-QWSRKDV-EGSLFVVKRFL--SFFFF 74 (101)
Q Consensus 38 as~v~lY~f~~~~~-~WeK~dv-EG~LFv~~R~~--~y~~i 74 (101)
++-|.||.+|+.++ .|.+.+- .|.+-||.... .|+++
T Consensus 13 s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~d~~rnsyRIv 53 (168)
T 1i2h_A 13 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRII 53 (168)
T ss_dssp EEEEEEEEECTTSSCCSEESCSSCEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEEECCCCCCceeecCCCCeEEEEEEcCCCCEEEEE
Confidence 46789999999886 9999553 34555666555 45554
No 18
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=47.59 E-value=39 Score=23.33 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=50.0
Q ss_pred cHHHHHhhCcc---hHHHhhhCCeEEEEeeeCCCCCeeec-------CceeeEEEEEecCceEEEEEecCCCCCcccccc
Q 044026 20 NLTVLQRIDPF---IEEILITAAHVTFYEFNIESNQWSRK-------DVEGSLFVVKRFLSFFFFLINVANCSHLLPRFF 89 (101)
Q Consensus 20 NL~vL~R~Dp~---I~~Il~~as~v~lY~f~~~~~~WeK~-------dvEG~LFv~~R~~~y~~iILNR~~~~n~~e~i~ 89 (101)
.|+.|+ |+. +..+|.....+.+..-| +.|.|. +.+|....+++++-|...| ...+-...|.
T Consensus 33 ~l~~~s--d~sg~~l~~~L~~~d~V~v~t~D---G~W~rdI~LP~~~~~~gK~V~~~S~AgY~S~V----~y~~~svtl~ 103 (126)
T 4dny_A 33 EVNKLS--DASGSSIHSHLTNNALVEIHTAN---GRWVRDIYLPQGPDLEGKMVRFVSSAGYSSTV----FYGDRKVTLS 103 (126)
T ss_dssp HHHGGG--CTTCHHHHHHHTSCSEEEEEEET---TBCCSEEECCCSGGGTTCEEEEEEECSSCEEE----EETTEEEEEC
T ss_pred hhhhcc--CCchHHHHHHhccCCEEEEEecC---CceEcceECCCCcccCCCEEEEEEecCccEEE----EECCcEEEec
Confidence 344555 664 77888888888888887 899972 3589999999998555544 1224445777
Q ss_pred cceEEEEeEe
Q 044026 90 FHFYFNFVFD 99 (101)
Q Consensus 90 ~~~e~~~~~~ 99 (101)
.+-++.|.++
T Consensus 104 rG~t~~F~y~ 113 (126)
T 4dny_A 104 VGNTLLFKYV 113 (126)
T ss_dssp TTCEEEEEEE
T ss_pred CCCEEEEEEc
Confidence 7777777764
No 19
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=45.69 E-value=21 Score=23.89 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=22.5
Q ss_pred CCeEEEEeeeCCCCCeeecCcee--eEEEEEe
Q 044026 38 AAHVTFYEFNIESNQWSRKDVEG--SLFVVKR 67 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~dvEG--~LFv~~R 67 (101)
++-|.||.+|+.++.|.+.+--| ..-||..
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~ 39 (118)
T 1xod_A 8 RVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKT 39 (118)
T ss_dssp EEEEEEEEECSSSSCEEEGGGCCCEEEEEECC
T ss_pred EEEEEEeeEcCCCCCEeeCCCCCcccEEEEEe
Confidence 46789999999999999987533 2556654
No 20
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=40.34 E-value=34 Score=23.18 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=22.7
Q ss_pred hCCeEEEEeeeCCCCCeeecCcee--eEEEEEe
Q 044026 37 TAAHVTFYEFNIESNQWSRKDVEG--SLFVVKR 67 (101)
Q Consensus 37 ~as~v~lY~f~~~~~~WeK~dvEG--~LFv~~R 67 (101)
.++-|.||.+|+.++.|.+.+--| ..-||..
T Consensus 16 ~~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~ 48 (126)
T 2jp2_A 16 VRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKV 48 (126)
T ss_dssp EEEEEEEEEECTTSSSSEECSCCSCEEEEEECC
T ss_pred EEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEe
Confidence 346789999999999999987533 2445543
No 21
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A {Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Probab=27.56 E-value=25 Score=28.98 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.4
Q ss_pred hhccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 17 KMLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
.+.|-..|+-+|.-|.+++..- +.|+||+||.
T Consensus 110 g~~N~~Gl~fY~~lid~l~~~GIeP~VTL~H~dl 143 (540)
T 4a3y_A 110 GGVNKEGINYYNNLIDGLLANGIKPFVTLFHWDV 143 (540)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCccceeccCCCC
Confidence 4789999999999999999876 9999999996
No 22
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=26.77 E-value=97 Score=21.70 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=24.1
Q ss_pred CCeEEEEeeeCCCCCeeecCceeeEEEEEecC
Q 044026 38 AAHVTFYEFNIESNQWSRKDVEGSLFVVKRFL 69 (101)
Q Consensus 38 as~v~lY~f~~~~~~WeK~dvEG~LFv~~R~~ 69 (101)
++-|-||.-++. ++|.+. ..|.+-+++-..
T Consensus 45 taVaqLy~a~~~-~~W~~~-~~Gal~~VkD~~ 74 (152)
T 1mke_A 45 SAVVQLYAADRN-CMWSKK-CSGVACLVKDNP 74 (152)
T ss_dssp EEEEEEEEEETT-TEEEEE-EEEEEEEEEETT
T ss_pred EeeEEEEEECCC-CceEec-CceEEEEEEECC
Confidence 466779999874 799996 699998888665
No 23
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET: BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A* 3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A* 3vij_A* 3vik_A* 3vil_A*
Probab=23.89 E-value=31 Score=28.22 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=29.1
Q ss_pred hhccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 17 KMLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
.+.|-..|+-+|.-|.+++..- +.|+||+||.
T Consensus 99 g~~N~~Gl~fY~~lId~Ll~~GIeP~VTL~H~Dl 132 (487)
T 3vii_A 99 NIVNQDGIDYYNNLINELLANGIEPMVTMYHWDL 132 (487)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEEecCCC
Confidence 4689999999999999999866 9999999995
No 24
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase; HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A* 3gnr_A*
Probab=23.61 E-value=28 Score=28.43 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=29.1
Q ss_pred hhccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 17 KMLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
.+.|-..|+.+|.-|.+++..- +.|+||+||.
T Consensus 102 g~~N~~Gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (488)
T 3gnp_A 102 GQVNQAGIDHYNKLIDALLAKGIQPYVTLYHWDL 135 (488)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 5789999999999999999865 9999999995
No 25
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase, hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A* 3ptq_A*
Probab=21.38 E-value=36 Score=27.98 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=29.0
Q ss_pred hhccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 17 KMLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
.+.|-..|+-+|.-|.+++..- +.|+||+||.
T Consensus 122 g~vN~~Gl~fY~~lid~l~~~GIeP~VTL~HwDl 155 (505)
T 3ptm_A 122 GGVNKEGIKYYNNLINELLSKGVQPFITLFHWDS 155 (505)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 3689999999999999999865 9999999996
No 26
>4dde_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: BG6; 1.45A {Streptococcus mutans} PDB: 3pn8_A* 4f66_A* 4gpn_A* 4f79_A*
Probab=20.79 E-value=39 Score=27.51 Aligned_cols=32 Identities=28% Similarity=0.257 Sum_probs=28.8
Q ss_pred hhccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 17 KMLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
...|-..|+-+|.-|.+++..- +.|+||+||.
T Consensus 103 g~~N~~Gl~fY~~lid~l~~~GIeP~VTL~H~Dl 136 (480)
T 4dde_A 103 AEPNEAGLQFYDDLFDECLKYGIEPVVTLSHFEL 136 (480)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCcceEEeeCCCC
Confidence 4689999999999999999864 9999999995
No 27
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A {Halothermothrix orenii}
Probab=20.52 E-value=37 Score=27.47 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=28.7
Q ss_pred hhccHHHHHhhCcchHHHhhhC--CeEEEEeeeC
Q 044026 17 KMLNLTVLQRIDPFIEEILITA--AHVTFYEFNI 48 (101)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~a--s~v~lY~f~~ 48 (101)
.+.|-..|+.+|.-|.+++..- +.|+||+||.
T Consensus 98 g~~N~~Gl~fY~~lid~l~~~GIeP~vTL~H~dl 131 (458)
T 3ta9_A 98 GRVNQKGLDFYKRLVDNLLKANIRPMITLYHWDL 131 (458)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4789999999999999999864 9999999995
No 28
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.05 E-value=96 Score=19.50 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=28.0
Q ss_pred HhhCcchHHHhhhCCeEEEEeeeCCCCCeeecCcee--eEEEEE
Q 044026 25 QRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG--SLFVVK 66 (101)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~lY~f~~~~~~WeK~dvEG--~LFv~~ 66 (101)
++..|.+.++...-..+.++..|.+... ++-+|.| ++++|+
T Consensus 46 ~~~~p~l~~la~~~~~v~~~~vd~~~~~-~~~~i~~~Pt~~~~~ 88 (135)
T 2dbc_A 46 LVVNQHLSVLARKFPETKFVKAIVNSCI-EHYHDNCLPTIFVYK 88 (135)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECCSSSC-SSCCSSCCSEEEEES
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEhhcCc-ccCCCCCCCEEEEEE
Confidence 4556777777766677889998876544 5667776 555654
Done!