BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044027
(638 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/484 (19%), Positives = 198/484 (40%), Gaps = 68/484 (14%)
Query: 178 VEEASSTAMADLKSIADCMINAGYTKECIKVYKVIRKSIIDEGIYRL-----------GV 226
+E + + D+ I+ ++ G ++ + VY IR S +D I L GV
Sbjct: 106 LEHLPESVLRDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGV 165
Query: 227 ERVTSSQINKMDW------------QVIDLKIKNWLEAVKIAMKTLFTGERILCD----- 269
+ + D ++D++ ++ V +K + R+L +
Sbjct: 166 PYSPAIPNKRKDTPTKKPIKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYRLLMEIIPEH 225
Query: 270 HVFASSESIRESCFTDISKEGAAILFAFPELVIKVKKAPAEKMFRVLDMYTAIAESWPVI 329
H + +S+ + + EG I+ A + +I+ + +F +L + ++ P
Sbjct: 226 HQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPIL---RHLKQTKPEF 282
Query: 330 ESIFSFESTSAVRSKALTSLIKIGES-ARQMILDFETHIQKDSSKT-QVPGGG-VHHLTI 386
+ + + T+A L LI E+ + + DF +I+ D K +P G VH LT
Sbjct: 283 DQVL--QGTAASTKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTS 340
Query: 387 DVMNYLTSLGDYSNILGDILADWDPPAKSTSSPLVSYFESPETTADNDSPAPAVTLHVAW 446
+ + +L L D+ G +LA + + +T + ++ ++ ++
Sbjct: 341 NAILFLQQLLDFQETAGAMLASQETSSSAT-------------SYSSEFSKRLLSTYICK 387
Query: 447 LIVSLLCKLDAKAKHYKDAHLAYLFLANNLQHVVAKVRTSYLQFLLGEEWINKNEAK--- 503
++ +L L +K+K Y+D L+ +FL NN +++ + S L L+ + + A+
Sbjct: 388 VLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVA---VTQKTAERSY 444
Query: 504 ---LKQFVASYVRVAWGPVLKSLPENPTAVITPG---------QAKDYFKSFNSTFEHVY 551
++Q + +Y R +W V + E V PG K+ FK FN E +
Sbjct: 445 REHIEQQIQTYQR-SWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELC 503
Query: 552 KQHSRCVVPYAKLREEIKETIARKLLAAYGRFYETHKVTVGERNVMLFVRFTPEDVDNYL 611
K +P + R++I++ + YG F + +N ++++ E V + +
Sbjct: 504 KIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMI 563
Query: 612 SDLF 615
LF
Sbjct: 564 DRLF 567
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 117/278 (42%), Gaps = 39/278 (14%)
Query: 367 IQKDSSKTQVP-GGGVHHLTIDVMNYLTSLGDYSNILGDILADWDPPAKSTSSPLVSYFE 425
I+K +S + +P GV T+D M+ L +Y N L D + P S ++
Sbjct: 294 IKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKN---GCLGAMDNITRENWLP--SNYK 348
Query: 426 SPETTADNDS-----PAPAVTLHVAWLIVSLLCKLDAKAK---------------HYKDA 465
E T N++ ++ ++ I +L L+ KA+ K+
Sbjct: 349 EKEYTLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNK 408
Query: 466 HLAYL--FLANNLQHVVAKVRTSYLQFLLGEEWINKNEAKLKQFVASYVRVAWGPVLKSL 523
H + F+ NL V V S L +L E ++ E +LK+ SY+ W + +L
Sbjct: 409 HKQRIGFFILMNLTLVEQIVEKSELNLMLAGEGHSRLE-RLKKRYISYMVSDWRDLTANL 467
Query: 524 PENPTAVITPG-------QAKDYFKSFNSTFEHVYKQHSRCVVPYAKLREEIKETIARKL 576
++ + + G Q K+ F+ FN FE + + + + L+ +K I +
Sbjct: 468 MDS-VFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLV 526
Query: 577 LAAYGRFYETHKVTVGERNVMLFVRFTPEDVDNYLSDL 614
+ Y RFY +K + +N +++TP+++ L+ L
Sbjct: 527 MPMYERFYSRYKDSF--KNPRKHIKYTPDELTTVLNQL 562
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 117/278 (42%), Gaps = 39/278 (14%)
Query: 367 IQKDSSKTQVP-GGGVHHLTIDVMNYLTSLGDYSNILGDILADWDPPAKSTSSPLVSYFE 425
I+K +S + +P GV T+D M+ L +Y N L D + P S ++
Sbjct: 293 IKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKN---GCLGAMDNITRENWLP--SNYK 347
Query: 426 SPETTADNDS-----PAPAVTLHVAWLIVSLLCKLDAKAK---------------HYKDA 465
E T N++ ++ ++ I +L L+ KA+ K+
Sbjct: 348 EKEYTLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNK 407
Query: 466 HLAYL--FLANNLQHVVAKVRTSYLQFLLGEEWINKNEAKLKQFVASYVRVAWGPVLKSL 523
H + F+ NL V V S L +L E ++ E +LK+ SY+ W + +L
Sbjct: 408 HKQRIGFFILMNLTLVEQIVEKSELNLMLAGEGHSRLE-RLKKRYISYMVSDWRDLTANL 466
Query: 524 PENPTAVITPG-------QAKDYFKSFNSTFEHVYKQHSRCVVPYAKLREEIKETIARKL 576
++ + + G Q K+ F+ FN FE + + + + L+ +K I +
Sbjct: 467 MDS-VFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLV 525
Query: 577 LAAYGRFYETHKVTVGERNVMLFVRFTPEDVDNYLSDL 614
+ Y RFY +K + +N +++TP+++ L+ L
Sbjct: 526 MPMYERFYSRYKDSF--KNPRKHIKYTPDELTTVLNQL 561
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,393,056
Number of Sequences: 62578
Number of extensions: 613783
Number of successful extensions: 1376
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1371
Number of HSP's gapped (non-prelim): 10
length of query: 638
length of database: 14,973,337
effective HSP length: 105
effective length of query: 533
effective length of database: 8,402,647
effective search space: 4478610851
effective search space used: 4478610851
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)