Query 044027
Match_columns 638
No_of_seqs 196 out of 495
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2344 Exocyst component prot 100.0 1E-110 2E-115 942.0 61.1 570 35-619 37-616 (623)
2 PF03081 Exo70: Exo70 exocyst 100.0 1.8E-77 3.9E-82 647.5 27.1 360 246-614 1-371 (371)
3 PF06419 COG6: Conserved oligo 99.2 2.7E-06 5.8E-11 98.2 46.9 469 40-611 89-618 (618)
4 PF04129 Vps52: Vps52 / Sac2 f 98.0 0.021 4.5E-07 64.8 33.8 376 41-511 66-507 (508)
5 KOG3758 Uncharacterized conser 98.0 0.054 1.2E-06 60.8 43.2 469 39-611 121-651 (655)
6 KOG1961 Vacuolar sorting prote 97.2 0.56 1.2E-05 52.7 36.7 346 41-485 127-550 (683)
7 PF09763 Sec3_C: Exocyst compl 97.1 1 2.2E-05 53.4 36.3 214 344-585 438-693 (701)
8 PF10191 COG7: Golgi complex c 82.1 1.2E+02 0.0027 36.4 27.8 132 187-335 201-335 (766)
9 PF04136 Sec34: Sec34-like fam 80.8 5.3 0.00012 38.1 7.0 89 40-131 58-150 (157)
10 TIGR02553 SipD_IpaD_SspD type 60.9 27 0.0006 36.6 7.2 108 492-615 117-237 (308)
11 KOG2148 Exocyst protein Sec3 [ 54.6 4.2E+02 0.009 31.1 34.5 211 345-590 605-841 (867)
12 KOG3821 Heparin sulfate cell s 50.6 15 0.00033 41.5 3.5 70 533-616 97-168 (563)
13 KOG1916 Nuclear protein, conta 48.5 1.1E+02 0.0023 37.0 9.9 49 533-584 1014-1064(1283)
14 PF08385 DHC_N1: Dynein heavy 47.1 3.6E+02 0.0079 30.8 14.5 89 308-406 327-419 (579)
15 PF15264 TSSC4: Tumour suppres 36.2 11 0.00024 34.0 -0.1 18 591-608 56-73 (115)
16 PF01153 Glypican: Glypican; 35.7 62 0.0014 37.4 5.7 71 533-617 89-161 (557)
17 PF07393 Sec10: Exocyst comple 32.1 9.3E+02 0.02 28.6 24.1 103 186-298 128-245 (710)
18 KOG2047 mRNA splicing factor [ 32.1 72 0.0016 37.1 5.2 47 571-617 135-182 (835)
19 PRK15330 cell invasion protein 31.5 84 0.0018 33.5 5.3 64 491-556 144-207 (343)
20 KOG4514 Uncharacterized conser 27.7 5.9E+02 0.013 24.9 9.7 21 177-197 118-138 (222)
21 PHA03373 tegument protein; Pro 26.9 2.1E+02 0.0045 28.9 6.7 59 204-269 70-131 (247)
22 PHA01746 hypothetical protein 24.8 28 0.00061 30.9 0.4 22 580-606 76-97 (131)
23 KOG4344 Uncharacterized conser 22.7 2.7E+02 0.0058 32.4 7.5 67 469-553 968-1038(1121)
24 PF08069 Ribosomal_S13_N: Ribo 20.2 87 0.0019 25.0 2.3 26 591-616 17-42 (60)
No 1
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-111 Score=942.05 Aligned_cols=570 Identities=44% Similarity=0.711 Sum_probs=495.5
Q ss_pred CccCCcchHHHHHHHHHHHhhccCCCCc--cccccccc-cccChhhHHHHHHHHHHHHHHHHHhhhcCCc-hHH--HHHH
Q 044027 35 RSSISVSPVDQIIDAASGMITKWDPGSS--TFARVTSL-FYESKREAMQFLRCVDDLQKTMHLLVSENSS-SAK--LIEA 108 (638)
Q Consensus 35 ~~~~~~~nie~~l~~~e~vi~~~~~~~~--~~~~~~~i-~~g~~~~l~~yL~Av~~l~~a~~~l~~~~~~-~~~--l~~~ 108 (638)
.+....+-++.++..++.++.+|+.+.. ... ..| |..++.++..|+++|++|+.+++++.+.++. ... ..++
T Consensus 37 ~~s~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~--~~i~~~~~~~e~~~~~~~v~~l~~~l~~l~s~~~~~~~~~~~~~~ 114 (623)
T KOG2344|consen 37 NQSEEKSPKEATIEQAEEIIEKFLTALNLRSSS--KIISFLESREEAKNFLSAVNTLQETLQFLVSQNGLQSSKLLKAQA 114 (623)
T ss_pred hhhcchhHHHhhhhhHHHHHHHHhhhcccchhh--hhhhccCChHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHhH
Confidence 3444444489999999999999998773 221 112 3368999999999999999999999877654 344 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccCccccccCCCCCCCCCCCCCCCCccccc-CCCCccccccCCHHHHH
Q 044027 109 QTLMQVAMKRLQKEFYQILSMNRAHLDPESLSTRSSRTSARSSLSDYDDEGSPDQDDNEVRD-AGDSIFEVEEASSTAMA 187 (638)
Q Consensus 109 ~~Ll~~am~~Le~EF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 187 (638)
..+++.||.+||+||++||..++.+++|+.+....+.............+ +.+........ .+.....++.+|++++.
T Consensus 115 d~l~~~am~~le~EF~~il~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 193 (623)
T KOG2344|consen 115 DSLLQIAMSRLEKEFRQILENNREELDPERLSVRLRSSLNSKDEEASLNS-DSKYSALSDEESFGDDEIEPDLFPPDVMT 193 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchHhhhhccccccccccccccccc-CcccccccccccccCceeeccCCCchhHH
Confidence 44999999999999999999999999999887765533221000000000 00000000001 33334568999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHhcCCCccChhhhhccchHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 044027 188 DLKSIADCMINAGYTKECIKVYKVIRKSIIDEGIYRLGVERVTSSQINKMDWQVIDLKIKNWLEAVKIAMKTLFTGERIL 267 (638)
Q Consensus 188 ~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~e~~~~~~v~k~~~e~~e~~i~~wi~al~~~v~~L~~~E~~L 267 (638)
+|+.||++|+++||.++|+++|..+|+.+++++|..||+++++++++++|+|+.++.+|++|+++++++++.||++|+.|
T Consensus 194 dLk~Ia~~mi~~gy~~eC~~~Y~~vrk~i~~e~l~~L~~e~ls~~~vq~~~we~le~~I~~Wi~~~kv~v~~lf~~E~~L 273 (623)
T KOG2344|consen 194 DLKAIAQRMIAAGYEKECFKVYKSIRKSILDESLVNLGVEKLSIEDVQRMDWEVLEGKIKKWIKAVKVAVSVLFEGEKKL 273 (623)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhcCeeeccHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCchhhhhHHHHHHHHHHHHHhhhHHHHHhhcCcCHHHHHHHHHHHHHHHhhhHHHHhhhcCCchHHHHHHHHH
Q 044027 268 CDHVFASSESIRESCFTDISKEGAAILFAFPELVIKVKKAPAEKMFRVLDMYTAIAESWPVIESIFSFESTSAVRSKALT 347 (638)
Q Consensus 268 ~~~vf~~~~~~~~~~F~~i~~~~~~~ll~f~~~va~~kr~~~eklf~lLdmye~L~~~~p~i~~lf~~~~~~~vr~~~~~ 347 (638)
|++||++.++....||.+|++.++++||+|+++|+..+| +|||+|++||||+++.+++|+++.+|++..++.+|.++..
T Consensus 274 cd~If~~~~~~~~~cF~eI~~~~~~~ll~F~eava~~kr-~pEklf~iLd~y~~i~~l~p~ie~lF~~~~~s~vr~~~~~ 352 (623)
T KOG2344|consen 274 CDQIFSDLESIVESCFPEIVKEAALQLLSFPEAVAISKR-SPEKLFKLLDLYETIVELRPDIERLFSDASCSEVRSQALS 352 (623)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHHHhhccchheeeccC-CHHHHHHHHHHHHHHHHHHHHHHHhccCccCHHHHHHHHH
Confidence 999999876543389999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccchhHHHHHHHHHHHhhchHHHHHHHccCCCCCCCCCCCCccccCCC
Q 044027 348 SLIKIGESARQMILDFETHIQKDSSKTQVPGGGVHHLTIDVMNYLTSLGDYSNILGDILADWDPPAKSTSSPLVSYFESP 427 (638)
Q Consensus 348 ~l~~L~~~~~~~~~ef~~~I~~~~s~~~~~dG~VH~lT~~vmnyL~~L~ey~~~L~~iL~~~~~~~~~~~~~p~~~~~s~ 427 (638)
++++|+++++++|.||++.|+.|++++|++||||||||+||||||+.|++|+++|.++|.+|+... .++.+
T Consensus 353 ~~~rL~~~~~~~~~efe~~I~~d~sk~pv~gG~VHpLTryvmnyl~~L~dy~~tL~~il~~~~~~~----~~~~~----- 423 (623)
T KOG2344|consen 353 LLKRLGEGVRSIFVEFESAIRKDSSKTPVPGGGVHPLTRYVMNYLNFLADYKDTLEQLLMEDPVDT----SLPKS----- 423 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcChhHHHHHHHHHHHHHHHHHHHHHHhcccccc----ccCcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999874110 11111
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHccHHHHHHHhhccchhhhhhhhHHHHHHHHHHHH
Q 044027 428 ETTADNDSPAPAVTLHVAWLIVSLLCKLDAKAKHYKDAHLAYLFLANNLQHVVAKVRTSYLQFLLGEEWINKNEAKLKQF 507 (638)
Q Consensus 428 ~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~KSk~y~d~aL~~iFLlNN~~yI~~~v~~SeL~~lLG~~w~~~~~~~v~~~ 507 (638)
+. +.....++++.+++|||..|++||++||+.|+|++|+|||||||+|||+++|++++|+.+||++|+++|..+++||
T Consensus 424 ~~--~~~~~~s~l~~~~~~ii~~L~~nLd~Ks~~Y~D~aL~~lFlmNN~~yiv~kvkss~L~~llGd~wl~kh~~~~~qy 501 (623)
T KOG2344|consen 424 ES--EDESSNSLLAVHIARIILALECNLDTKSKLYKDPALSYLFLMNNLHYIVQKVKSSELRLLLGDDWLRKHEEKLRQY 501 (623)
T ss_pred cc--cccccccHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHHHhhHHHHHHHHhcchHHHHhchHHHHHHHHHHHHH
Confidence 01 1122358999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHhcHHhhhccCCCCCCC---CCChhhHHhHHHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 044027 508 VASYVRVAWGPVLKSLPENPTA---VITPGQAKDYFKSFNSTFEHVYKQHSRCVVPYAKLREEIKETIARKLLAAYGRFY 584 (638)
Q Consensus 508 ~~~Y~~~sW~~vl~~L~d~~~~---~~~r~~iKekfk~FN~~FEe~~~~Q~~w~VpD~~LR~~Lr~~i~~~VlPaY~~F~ 584 (638)
++.|++++|++|+++|.+.+++ +++|+.+||||++||++|||+|++|++|+||||+||++||.+|+++|+|+|++||
T Consensus 502 ~~~Y~r~sW~~vl~~L~~~~s~~~~~~~~~~~Kerfk~FN~~FeEv~k~Qs~wvV~D~~Lr~eLk~si~~~v~P~Yr~F~ 581 (623)
T KOG2344|consen 502 ATSYERESWGKVLSLLTDEGSSSGGKKSKEVLKERFKLFNEQFEEVYKKQSQWVVPDPKLREELKISISEKVVPAYRSFY 581 (623)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccCHHHHHHHHHHHHHHHHHHHHhhCceecccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988743 3889999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCCCcccccccCHHHHHHHHHhhhCCCC
Q 044027 585 ETHKVTVGERNVMLFVRFTPEDVDNYLSDLFFERS 619 (638)
Q Consensus 585 ~ry~~~~~~kn~~KyiKYtpe~le~~L~~LFeg~~ 619 (638)
+||+..-.+|||+|||||||||||++|++||+|++
T Consensus 582 ~r~~~~~~~k~~~kyikYtpedlE~~L~dLF~g~~ 616 (623)
T KOG2344|consen 582 GRYRNSVSGKNPEKYIKYTPEDLENYLSDLFEGSP 616 (623)
T ss_pred HHhccccCCCCCCcccccCHHHHHHHHHHHhCCCC
Confidence 99987522899999999999999999999999987
No 2
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=100.00 E-value=1.8e-77 Score=647.55 Aligned_cols=360 Identities=38% Similarity=0.641 Sum_probs=314.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHhhhHHHHH---hhcCcCHHHHHHHHHHHHHH
Q 044027 246 IKNWLEAVKIAMKTLFTGERILCDHVFASSESIRESCFTDISKEGAAILFAFPELVI---KVKKAPAEKMFRVLDMYTAI 322 (638)
Q Consensus 246 i~~wi~al~~~v~~L~~~E~~L~~~vf~~~~~~~~~~F~~i~~~~~~~ll~f~~~va---~~kr~~~eklf~lLdmye~L 322 (638)
|++|+.++++++.+|+++|++||++||+..++.++.||.+++++++..|++|+++|+ ...+ +|+++|.+||||++|
T Consensus 1 ~~~wi~~~~~~~~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~~~~ll~~~~~v~~~~~~~~-~~~~lf~ll~~~~~l 79 (371)
T PF03081_consen 1 IKRWIQAYKVALKKLFQSERRLCDQVFPESSSIADECFAEIAKPPLLQLLNFADAVASVRNSQR-SPEKLFELLDMYEAL 79 (371)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHSSCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHC-CHTCCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-ChHHHHHHHHHHHHH
Confidence 678999999999999999999999999998878999999999999999999999999 7788 999999999999999
Q ss_pred HhhhHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCCCCCccchhHHHHHHHHHHHhhchH
Q 044027 323 AESWPVIESIFSFESTSAVRSKALTSLIKIGESARQMILDFETHIQK--DSSKTQVPGGGVHHLTIDVMNYLTSLGDYSN 400 (638)
Q Consensus 323 ~~~~p~i~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~~~ef~~~I~~--~~s~~~~~dG~VH~lT~~vmnyL~~L~ey~~ 400 (638)
.+++|+++.+|.+.++..++.++.+++++|+++++++|.+|.+.|+. ++.+.+|+||+|||+|++|||||+.|++|++
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~~~~i~~~~~~~~~~p~dg~Vh~lT~~vm~yl~~L~~y~~ 159 (371)
T PF03081_consen 80 SELLPDLDSLFSGESCESIRQEFDELLKKLREAIRKILEEFEESIKNDSDSSSSVPSDGGVHPLTSYVMNYLKRLAEYRD 159 (371)
T ss_dssp HHHHCCCHHCTCC-S-HHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGCS-TTS---HHHHHHHHHHHHHHCTHH
T ss_pred HHHhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 7788889999999999999999999999999
Q ss_pred HHHHHHccCCCCCCCCCCCCccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHccHHHHH
Q 044027 401 ILGDILADWDPPAKSTSSPLVSYFESPETTADNDSPAPAVTLHVAWLIVSLLCKLDAKAKHYKDAHLAYLFLANNLQHVV 480 (638)
Q Consensus 401 ~L~~iL~~~~~~~~~~~~~p~~~~~s~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~KSk~y~d~aL~~iFLlNN~~yI~ 480 (638)
+|+.+|.....+.....+.+... .+ .++.+.++++.||.++|++|+.|||+||+.|+|++|++||||||+|||+
T Consensus 160 ~l~~il~~~~~~~~~~~~~~~~~--~~----~~~~~~~~l~~~i~~ii~~L~~~Le~ks~~y~d~~l~~iFLlNN~~yI~ 233 (371)
T PF03081_consen 160 TLESILQSDGDGNWLSESGPPSE--SS----SSTDSQSSLSSYIADIISALESNLEAKSKSYKDPALRYIFLLNNYHYIL 233 (371)
T ss_dssp HHHHCCCTT-GGGGS-SS--GGG--S-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCHCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccccccc--cc----cccCccchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 99999976332110000000000 00 0022467899999999999999999999999999999999999999999
Q ss_pred HHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHhcHHhhhccCCCC------CCCCCChhhHHhHHHHHHHHHHHHHHhc
Q 044027 481 AKVRTSYLQFLLGEEWINKNEAKLKQFVASYVRVAWGPVLKSLPEN------PTAVITPGQAKDYFKSFNSTFEHVYKQH 554 (638)
Q Consensus 481 ~~v~~SeL~~lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~------~~~~~~r~~iKekfk~FN~~FEe~~~~Q 554 (638)
+++++|+|..+||++|++++.+++++|++.|++++|+||+++|.++ +..+++|+.+|+||++||++|||+|+.|
T Consensus 234 ~~~~~s~l~~~lg~~~~~~~~~~~~~~~~~Y~~~sW~~v~~~L~~~~~~~~~~~~~~~~~~~ke~f~~Fn~~fee~~~~q 313 (371)
T PF03081_consen 234 KKLKRSELKDLLGDDWEQRLSSKIEQYIKSYLRSSWGPVLSCLSDDSSSSGGKLSSKERELLKEKFKKFNSAFEEIYKAQ 313 (371)
T ss_dssp CCCCTSHHHHCCTTCHHHHHHHHHHHHHHHHHCHHHHHHHCTCCHHCC-T-SSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999998899999999883 1345789999999999999999999999
Q ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccCHHHHHHHHHhh
Q 044027 555 SRCVVPYAKLREEIKETIARKLLAAYGRFYETHKVTVGERNVMLFVRFTPEDVDNYLSDL 614 (638)
Q Consensus 555 ~~w~VpD~~LR~~Lr~~i~~~VlPaY~~F~~ry~~~~~~kn~~KyiKYtpe~le~~L~~L 614 (638)
+.|+||||+||++||++|+++|+|+|++||+||+...| ||+|||||||++||++|++|
T Consensus 314 ~~~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~~~--~~~Kyikyt~~~le~~l~~L 371 (371)
T PF03081_consen 314 KTWKVPDPELREELRREIKEKVVPAYRRFYERYRNSQF--NPEKYIKYTPEDLENMLNEL 371 (371)
T ss_dssp TT---S-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCSS--SHCCC-SS-HHHHHHHHHTC
T ss_pred cceecCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCCCCCccCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999977 99999999999999999986
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=99.16 E-value=2.7e-06 Score=98.19 Aligned_cols=469 Identities=14% Similarity=0.176 Sum_probs=261.1
Q ss_pred cchHHHHHHHHHHHhhccCCCCccccccccccccChhhHHHHHHHHHHHHHHHH---Hhhhc-CC--chHHHHHHHHHHH
Q 044027 40 VSPVDQIIDAASGMITKWDPGSSTFARVTSLFYESKREAMQFLRCVDDLQKTMH---LLVSE-NS--SSAKLIEAQTLMQ 113 (638)
Q Consensus 40 ~~nie~~l~~~e~vi~~~~~~~~~~~~~~~i~~g~~~~l~~yL~Av~~l~~a~~---~l~~~-~~--~~~~l~~~~~Ll~ 113 (638)
...++.--+.+...+++|-....+. ..+-.|...=-+.|..|++|+++..+ .|... +. +-+.++.....++
T Consensus 89 ~~~~~~k~~ll~~f~~~f~Ls~~E~---~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~~~~ag~~iM~~~~~~~e 165 (618)
T PF06419_consen 89 KEELELKKKLLDAFLERFTLSEEEE---DALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTENQRAGLEIMEQMSKYLE 165 (618)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHH---HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Confidence 3455666677888889999887765 44555533335689999999888665 34332 22 2456777788888
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCcccccCccccccCCCCCCCCCCCCCCCCcccccCCCCccccccCCHHHHHHHHHHH
Q 044027 114 VAMKRLQKEFYQILSMNRAHLDPESLSTRSSRTSARSSLSDYDDEGSPDQDDNEVRDAGDSIFEVEEASSTAMADLKSIA 193 (638)
Q Consensus 114 ~am~~Le~EF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ia 193 (638)
.|..||=.-...-..... .| -+..++..-..|+.+.
T Consensus 166 ~a~erl~~w~q~e~~~l~------------------------~~--------------------~~~~~~~l~~al~~L~ 201 (618)
T PF06419_consen 166 RAYERLYRWVQRECRSLN------------------------LD--------------------NPEVSPLLRRALRYLR 201 (618)
T ss_pred HHHHHHHHHHHHHHhhhh------------------------hc--------------------CcccchHHHHHHHHHh
Confidence 888777433321111110 00 0111233334455555
Q ss_pred HHHHhcCCchHHHHHHHHhhHHHHH-HHHHhcCCCcc------ChhhhhccchHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 044027 194 DCMINAGYTKECIKVYKVIRKSIID-EGIYRLGVERV------TSSQINKMDWQVIDLKIKNWLEAVKIAMKTLFTGERI 266 (638)
Q Consensus 194 ~~m~~~g~~~e~~~~Y~~~R~~~l~-~sL~~L~~e~~------~~~~v~k~~~e~~e~~i~~wi~al~~~v~~L~~~E~~ 266 (638)
++. .+-+.|++.|+..|+..+- +.+..|....- +++- +.-+---.=+.|-.|++.. +++|+.
T Consensus 202 ~rp---~lf~~~l~~~~~~R~~~l~~~F~~aLt~g~~~~~~~rPIel-~AhDP~RYvGDmLAwvHq~-------~a~E~E 270 (618)
T PF06419_consen 202 ERP---VLFNYCLDEFAEARSKALLRRFLDALTRGGPGGSPSRPIEL-HAHDPLRYVGDMLAWVHQA-------IASERE 270 (618)
T ss_pred cCh---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhh-hccChHHHHHHHHHHHHHH-------hhhHHH
Confidence 543 3668999999999988764 45556643221 1111 1000001124577788654 589999
Q ss_pred HHHhhcCCCch-h-----------------hhhHHHHHHHHHHHHHhh-hHHHHHhhcCcCH---HHHHHHHHHHHHHHh
Q 044027 267 LCDHVFASSES-I-----------------RESCFTDISKEGAAILFA-FPELVIKVKKAPA---EKMFRVLDMYTAIAE 324 (638)
Q Consensus 267 L~~~vf~~~~~-~-----------------~~~~F~~i~~~~~~~ll~-f~~~va~~kr~~~---eklf~lLdmye~L~~ 324 (638)
++..+|...+. . ...+..++.. ++..-|. =.+.|-.... .| -++..+|.-|...
T Consensus 271 ~l~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~i~~-~l~rplk~RvEQvi~se~-~~i~~yki~~LL~fY~~~-- 346 (618)
T PF06419_consen 271 FLESLFKFDEDEIAEGSSSGFDSNPWSEELINELLDRILE-GLCRPLKIRVEQVISSEE-DPITLYKIANLLSFYQMT-- 346 (618)
T ss_pred HHHHHhcccccccccccccccccccchHHHHHHHHHHHHH-HHhHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHHHH--
Confidence 99999986421 1 1111111111 0111111 1122212111 22 2567777777654
Q ss_pred hhHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccCCCCCCCCccchhHHHHHHHHHHHhhchH
Q 044027 325 SWPVIESIFSFESTSAVRSKALTSLIKIGESARQ----MILDFETHIQKDSSKTQVPGGGVHHLTIDVMNYLTSLGDYSN 400 (638)
Q Consensus 325 ~~p~i~~lf~~~~~~~vr~~~~~~l~~L~~~~~~----~~~ef~~~I~~~~s~~~~~dG~VH~lT~~vmnyL~~L~ey~~ 400 (638)
|..++...+ .+...+..|.+.+.+ ++.+....|.......++.|=...+.....++-|+.+.
T Consensus 347 ----~~k~i~~~s------~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~~~~~DL~PP~~l~d~l~~L~~il---- 412 (618)
T PF06419_consen 347 ----FSKLIGEDS------SLIETLKELQDLAQKKFFSSLRDHVAKLLRSAPEPPPADLSPPEWLIDFLSLLREIL---- 412 (618)
T ss_pred ----HHHHcCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHH----
Confidence 445544332 234455555555554 44555556665533445566565555555444444433
Q ss_pred HHHHHHccCCCCCCCCCCCCccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHccHHHHH
Q 044027 401 ILGDILADWDPPAKSTSSPLVSYFESPETTADNDSPAPAVTLHVAWLIVSLLCKLDAKAKHYKDAHLAYLFLANNLQHVV 480 (638)
Q Consensus 401 ~L~~iL~~~~~~~~~~~~~p~~~~~s~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~KSk~y~d~aL~~iFLlNN~~yI~ 480 (638)
...... . .+.++ .....-+...+..+|+-+....+..|....++.-..||++|.+.+|.
T Consensus 413 ------~~~~~s----------~--~~~~~---~~~~~~~~~Il~~~idpll~~c~~~a~~L~~~~~~~if~iNCl~~i~ 471 (618)
T PF06419_consen 413 ------DVYDSS----------L--SPDDD---RENDNDFKPILDEPIDPLLQMCQKSASPLAPKDDRAIFMINCLDLIQ 471 (618)
T ss_pred ------HHhhcc----------c--CCccc---hhhhhHHHHHHHHHhHHHHHHHHHHhhccCChhhhHHHHHHhHHHHH
Confidence 221110 0 00000 11125688889999999999999988877777667999999999999
Q ss_pred HHhhccchhhhhhhhHHHHHHHH--------HHHHHHHHHH-hcHHhhhccCC----CCC-------CCCCChhhHHhHH
Q 044027 481 AKVRTSYLQFLLGEEWINKNEAK--------LKQFVASYVR-VAWGPVLKSLP----ENP-------TAVITPGQAKDYF 540 (638)
Q Consensus 481 ~~v~~SeL~~lLG~~w~~~~~~~--------v~~~~~~Y~~-~sW~~vl~~L~----d~~-------~~~~~r~~iKekf 540 (638)
..+..-+.. .+|...+..+ ++.+....++ ..-+++...+. +.+ .+..+...++.-.
T Consensus 472 s~L~~~~~~----~~~~e~L~~~id~~~~~Lv~~Q~~~lL~~sGL~~~~~~l~~i~~~~~~~~pls~~p~~~~~~l~~a~ 547 (618)
T PF06419_consen 472 STLSPFEFT----SERVEELQDQIDAHVDTLVEEQASFLLERSGLGDLYNALNMIFFDYDMYGPLSENPGMDPDSLSNAL 547 (618)
T ss_pred HHccChHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHhhccCCcccCCcccCccCCHHHHHHHH
Confidence 998763211 2344444333 3333333333 22345555554 221 1345666665555
Q ss_pred HHHHHHHHHH-HHhccc-cccCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccCHHHHHHHH
Q 044027 541 KSFNSTFEHV-YKQHSR-CVVPYAKLREEIKETIARKLLAAYGRFYETHKVTVGERNVMLFVRFTPEDVDNYL 611 (638)
Q Consensus 541 k~FN~~FEe~-~~~Q~~-w~VpD~~LR~~Lr~~i~~~VlPaY~~F~~ry~~~~~~kn~~KyiKYtpe~le~~L 611 (638)
.+|+.-+--. .-.|.. -.+.+|.+|+.++......++-+|..||+...+...+ -+.-..+||++|..+|
T Consensus 548 ~kld~fL~sa~~d~~~~L~~L~Sp~l~~~I~~~a~~~f~~~Y~~v~~~v~d~~n~--y~sl~~~tpeeI~~LL 618 (618)
T PF06419_consen 548 QKLDDFLPSALTDAQPNLFKLQSPKLRDDIRERAFERFCKAYEKVYEAVMDPDNG--YESLFPRTPEEIRTLL 618 (618)
T ss_pred HHHHHHHcccchhhhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhChhcc--cccccCCCHHHHhhcC
Confidence 5555443221 122333 4478999999999999999999999999998875211 1135678999998764
No 4
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.99 E-value=0.021 Score=64.81 Aligned_cols=376 Identities=14% Similarity=0.112 Sum_probs=206.6
Q ss_pred chHHHHHHHHHHHhhccCCCCccccccccccccChhhHHHHHHHHHHHHHHHHHhhhc------CCchHHHHHHHHHHHH
Q 044027 41 SPVDQIIDAASGMITKWDPGSSTFARVTSLFYESKREAMQFLRCVDDLQKTMHLLVSE------NSSSAKLIEAQTLMQV 114 (638)
Q Consensus 41 ~nie~~l~~~e~vi~~~~~~~~~~~~~~~i~~g~~~~l~~yL~Av~~l~~a~~~l~~~------~~~~~~l~~~~~Ll~~ 114 (638)
.|-..+.+.+..+++.--+.++. +..|.+|+-++ .|+..+.++.+-...+... .+..+....+..|-..
T Consensus 66 ~Nrk~~~~~L~~~i~~i~ipP~l---I~~I~~~~v~e--~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~k 140 (508)
T PF04129_consen 66 KNRKAVEEKLSPFIDDIVIPPDL---IRSICEGPVNE--QYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNK 140 (508)
T ss_pred HhHHHHHHHHHHHHHHHcCCHHH---HHhHhcCCCCH--HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHH
Confidence 45555556666666655566543 35567776554 7777765555444444221 1224566788889999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCcccccCccccccCCCCCCCCCCCCCCCCcccccCCCCccccccCCHHHHHHHHHHHH
Q 044027 115 AMKRLQKEFYQILSMNRAHLDPESLSTRSSRTSARSSLSDYDDEGSPDQDDNEVRDAGDSIFEVEEASSTAMADLKSIAD 194 (638)
Q Consensus 115 am~~Le~EF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ia~ 194 (638)
|..|+-+.|-..+..-++|..+. ..+.. .+-..+.+..
T Consensus 141 a~~rir~fl~~kI~~lr~~~tn~-----------------------------------------q~iQ~-~LLk~~~~~~ 178 (508)
T PF04129_consen 141 AVERIRDFLLKKIKSLRKPKTNS-----------------------------------------QIIQQ-VLLKYKELFQ 178 (508)
T ss_pred HHHHHHHHHHHHHHHHcCCCCch-----------------------------------------HHHHH-HHHhhHHHHH
Confidence 99999999999999988764221 12222 4455666777
Q ss_pred HHHhcC--CchHHHHHHHHhhHHHH----H---HHHHhcCCCccCh-------------------------h--------
Q 044027 195 CMINAG--YTKECIKVYKVIRKSII----D---EGIYRLGVERVTS-------------------------S-------- 232 (638)
Q Consensus 195 ~m~~~g--~~~e~~~~Y~~~R~~~l----~---~sL~~L~~e~~~~-------------------------~-------- 232 (638)
+|.... ...|+.++|+..=+.+. . .+|..|....... .
T Consensus 179 FL~~~~~~~a~El~~~Yv~tM~~~Y~~~F~~Y~~~L~kl~~~~~~~~~dL~g~~~~~~~~~~s~~~~~~~~~~~Fslg~R 258 (508)
T PF04129_consen 179 FLKKHSPELAKELRQAYVETMSWYYSSYFKRYIRSLEKLQLRIIDSKDDLIGVEDSSKGGFFSSKSSLKNRSSVFSLGRR 258 (508)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCccccccccCCCcccccchhhhhhhHH
Confidence 776533 24567777764422221 1 2222221110000 0
Q ss_pred -hhhc--c------chH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHh
Q 044027 233 -QINK--M------DWQ--------VIDLKIKNWLEAVKIAMKTLFTGERILCDHVFASSESIRESCFTDISKEGAAILF 295 (638)
Q Consensus 233 -~v~k--~------~~e--------~~e~~i~~wi~al~~~v~~L~~~E~~L~~~vf~~~~~~~~~~F~~i~~~~~~~ll 295 (638)
++.+ . +.- ..|...+.|..++- --..+|+..|.+.|.......+.+|.+|-.+++..+.
T Consensus 259 ~~iL~~~~~~p~i~~~~a~~~~~k~~~E~iFRS~~~~L~----Dn~t~Ey~F~~~FF~~~~~~~~~if~~If~~t~~~~~ 334 (508)
T PF04129_consen 259 IDILNSELDAPIIVPQIAEDNSQKYPIEEIFRSLNKALI----DNATSEYLFISEFFSGSGDAAEDIFNQIFEPTFSLLQ 334 (508)
T ss_pred HHHHhhcccCCccccchhhcccccCCHHHHHHHHHHHHH----HhhhHHHHHHHHHHcccccchHHHHHHHHHHHHHHHH
Confidence 0000 0 000 13444555554442 2235799999999988554556778888887877777
Q ss_pred hhHHHHHhhcCcCHHHHHHHHHHHHHHHhhhHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-C
Q 044027 296 AFPELVIKVKKAPAEKMFRVLDMYTAIAESWPVIESIFSFESTSAVRSKALTSLIKIGESARQMILDFETHIQKDSSK-T 374 (638)
Q Consensus 296 ~f~~~va~~kr~~~eklf~lLdmye~L~~~~p~i~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~~~ef~~~I~~~~s~-~ 374 (638)
.|-+..... +++ .+.+|=|..-.....-.+ .......+..-+..+...|=-....++..=.+.|+.-..+ .
T Consensus 335 ~~~~~~l~~---~~D-~iglll~Irl~~~~~~~~----~~R~ip~ld~y~~~~~~~LWprF~~i~d~nieSlk~~~~~~~ 406 (508)
T PF04129_consen 335 EFTEQLLSN---SYD-AIGLLLCIRLNQRYQFEM----QRRRIPVLDSYLNSLLMLLWPRFQKIMDANIESLKKADPKKL 406 (508)
T ss_pred HHHHHHHHc---CCc-HHHHHHHHHHHHHHHHHH----HhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 776554221 233 233333333222221111 1111112233344444455555555666666677764443 3
Q ss_pred CCCCCccchhHHHHHHHHHHHhhchHHHHHHHccCCCCCCCCCCCCccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 044027 375 QVPGGGVHHLTIDVMNYLTSLGDYSNILGDILADWDPPAKSTSSPLVSYFESPETTADNDSPAPAVTLHVAWLIVSLLCK 454 (638)
Q Consensus 375 ~~~dG~VH~lT~~vmnyL~~L~ey~~~L~~iL~~~~~~~~~~~~~p~~~~~s~~~~~~~~~~~~~l~~~i~~ii~~L~~~ 454 (638)
.+.+.+.|++|+.--.|+..|. .+-... + ...+...+.++-..+..-
T Consensus 407 ~~~~~~PH~itrRyaef~~sll-------~L~~~~-------------------~-------~~~~~~~l~~L~~~~~~l 453 (508)
T PF04129_consen 407 GSIDTRPHYITRRYAEFLSSLL-------KLSSEH-------------------P-------DEQLEPSLNRLRREVEDL 453 (508)
T ss_pred ccCccCChHHHHHHHHHHHHHH-------HHhccC-------------------c-------hhhHHHHHHHHHHHHHHH
Confidence 3478888999886555544333 332111 0 112555566666666666
Q ss_pred HHHHhhccccchhhHHHHHccHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Q 044027 455 LDAKAKHYKDAHLAYLFLANNLQHVVAKVRTSYLQFLLGEEWINKNEAKLKQFVASY 511 (638)
Q Consensus 455 Le~KSk~y~d~aL~~iFLlNN~~yI~~~v~~SeL~~lLG~~w~~~~~~~v~~~~~~Y 511 (638)
|..-|+.++++..+.+||.||+.+|+..+...... .+. -...+.+..+.+...|
T Consensus 454 l~~~s~~~~~~k~~~iFLiNNY~lIl~iL~~~~~~--~~~-e~~~~~~~l~~~~~~f 507 (508)
T PF04129_consen 454 LTRLSKEFKDRKEREIFLINNYDLILSILSERTGK--LSK-EQKHFFELLQARTEEF 507 (508)
T ss_pred HHHHHHhcccccccceehHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHHhhc
Confidence 66667888888889999999999999999875322 111 2234455555555554
No 5
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.054 Score=60.76 Aligned_cols=469 Identities=13% Similarity=0.120 Sum_probs=229.9
Q ss_pred CcchHHHHHHHHHHHhhccCCCCccccccccccc-cChhhHHHHHHHHHHHHHHHH---HhhhcC---CchHHHHHHHHH
Q 044027 39 SVSPVDQIIDAASGMITKWDPGSSTFARVTSLFY-ESKREAMQFLRCVDDLQKTMH---LLVSEN---SSSAKLIEAQTL 111 (638)
Q Consensus 39 ~~~nie~~l~~~e~vi~~~~~~~~~~~~~~~i~~-g~~~~l~~yL~Av~~l~~a~~---~l~~~~---~~~~~l~~~~~L 111 (638)
-..-||...+-++...++|-..+++- ..+.+ ||- .+.|..+++|++...+ .|.... +.-+.+......
T Consensus 121 e~~~le~r~kii~~Fl~~fqLs~~E~---~~L~~~g~i--~e~FF~vL~rvqeIh~~~~~Ll~~~~~~Ag~eime~M~~~ 195 (655)
T KOG3758|consen 121 EAAQLELRKKIINAFLDNFQLSSEEL---DLLTESGPI--DEDFFKVLDRVQEIHDNCRLLLQTPNQTAGLEIMEKMALI 195 (655)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHH---HHHhcCCcc--hHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 34557778888999999998887653 33443 331 2467777777776554 343222 222334444444
Q ss_pred HHHHHHHHHHHHHHHHHhhC--CCCCCCcccccCccccccCCCCCCCCCCCCCCCCcccccCCCCccccccCCHHHHHHH
Q 044027 112 MQVAMKRLQKEFYQILSMNR--AHLDPESLSTRSSRTSARSSLSDYDDEGSPDQDDNEVRDAGDSIFEVEEASSTAMADL 189 (638)
Q Consensus 112 l~~am~~Le~EF~~lL~~~s--~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L 189 (638)
.+.|.++| -++.. ..-++. + .=+.++.+.|
T Consensus 196 ~E~a~erl-------~r~~qs~e~~~l~----------------~-------------------------t~~~E~~~il 227 (655)
T KOG3758|consen 196 QEGAYERL-------FRWSQSSECRNLT----------------G-------------------------TDSQEVSPIL 227 (655)
T ss_pred HHHHHHHH-------HHHhhhHhhcCCc----------------c-------------------------ccchhhHHHH
Confidence 44444443 33221 000000 0 0123455666
Q ss_pred HHHHHHHHhc-CCchHHHHHHHHhhHHH-HHHHHHhc--CCC-cc--ChhhhhccchHHHHHHHHhHHHHHHHHHHHHHH
Q 044027 190 KSIADCMINA-GYTKECIKVYKVIRKSI-IDEGIYRL--GVE-RV--TSSQINKMDWQVIDLKIKNWLEAVKIAMKTLFT 262 (638)
Q Consensus 190 ~~Ia~~m~~~-g~~~e~~~~Y~~~R~~~-l~~sL~~L--~~e-~~--~~~~v~k~~~e~~e~~i~~wi~al~~~v~~L~~ 262 (638)
++-..++..- -.-+.|++-|+..|+.. +.+.+..| |.. .. +++--..=|-. .=+.|-.|++.. .+
T Consensus 228 ~kA~~~L~~~p~lfk~~ide~~~aR~~~L~~~Fisaltrg~~~~~PrpIel~ahDPlR-yIGDmLawlHq~-------ia 299 (655)
T KOG3758|consen 228 RKAFVFLSSRPVLFKYLIDEVGTARSQSLLRQFISALTRGGPGGMPRPIELHAHDPLR-YIGDMLAWLHQA-------IA 299 (655)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCccccCCChHH-HHHHHHHHHHHH-------hh
Confidence 6666666532 23578999999999876 46777777 322 11 12110000111 123466787654 58
Q ss_pred HHHHHHHhhcCCCch-h-----hhhHHHHHHHHHHHHHhh-hHHHHH-----------hhcCcCHHH---HHHHHHHHHH
Q 044027 263 GERILCDHVFASSES-I-----RESCFTDISKEGAAILFA-FPELVI-----------KVKKAPAEK---MFRVLDMYTA 321 (638)
Q Consensus 263 ~E~~L~~~vf~~~~~-~-----~~~~F~~i~~~~~~~ll~-f~~~va-----------~~kr~~~ek---lf~lLdmye~ 321 (638)
+|+.+...+|..... . ...-...+..+....||. ..+.|+ ...+ ++-- +..+|.-|..
T Consensus 300 ~Ekelv~aLfd~~~~d~q~n~~~~en~~~vl~~~dn~lld~i~~gvcrPlkvRvEqil~~e~-~~Iilfki~nlL~FY~~ 378 (655)
T KOG3758|consen 300 NEKELVEALFDFKKEDLQDNISISENLPNVLGGIDNKLLDDILEGVCRPLKVRVEQILQAEK-NAIILFKISNLLKFYRV 378 (655)
T ss_pred hHHHHHHHHhcchhhhhccCCCchhHhHHHHhchhhhHHHHHHHHhcchhHHHHHHHHHcCc-CceeehhHHHHHHHHHH
Confidence 999999999932110 0 011112222222222222 122222 2222 3332 3444544443
Q ss_pred HHhhhHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccC-CCCCC-CCccch-hHHHHHHHHHHHhh
Q 044027 322 IAESWPVIESIFSFESTSAVRSKALTSLIKIGESARQMILDFET-HIQKDSS-KTQVP-GGGVHH-LTIDVMNYLTSLGD 397 (638)
Q Consensus 322 L~~~~p~i~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~~~ef~~-~I~~~~s-~~~~~-dG~VH~-lT~~vmnyL~~L~e 397 (638)
. |..+..+++ .+...++.|.+.++..|-...+ .++.=.. ..+|+ |=.-.| ++.+++++...+.-
T Consensus 379 ~------fs~~v~~ds------~l~~~l~~L~d~s~q~~~~~l~~~~~~l~~~~l~p~~DLlPpp~v~~~l~ll~ei~~~ 446 (655)
T KOG3758|consen 379 T------FSKLVQDDS------ALLNTLKELEDISKQRFIGYLEDHVKKLMRKELSPPSDLLPPPAVREYLNLLVEIFEI 446 (655)
T ss_pred H------HHHHhcccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHH
Confidence 2 444444432 3455667777777765544333 2221111 12333 544444 44444444444443
Q ss_pred chHHHHHHHccCCCCCCCCCCCCccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHccHH
Q 044027 398 YSNILGDILADWDPPAKSTSSPLVSYFESPETTADNDSPAPAVTLHVAWLIVSLLCKLDAKAKHYKDAHLAYLFLANNLQ 477 (638)
Q Consensus 398 y~~~L~~iL~~~~~~~~~~~~~p~~~~~s~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~KSk~y~d~aL~~iFLlNN~~ 477 (638)
|..++.... ++ ..+....+++.+..+|..-...-|.+-. -+|.+. -+||+|-.+
T Consensus 447 ~~a~~~~~d----------------------~~--~~df~~l~s~vldpilq~c~~sae~~lp-~~d~~~-~if~iNcL~ 500 (655)
T KOG3758|consen 447 YEASHTAED----------------------GE--QLDFKLLLSCVLDPILQMCQKSAEAHLP-TSDKGS-LIFMINCLD 500 (655)
T ss_pred hhhhhcccc----------------------cc--ccchHHHHHHHHHHHHHHHHHHHHhcCC-Cccccc-ceehhhhHH
Confidence 432221110 00 0112334455555554444444433311 123222 599999999
Q ss_pred HHHHHhhccc----hhhhhhhhHHHHHHHHHHHHHHHHHH-hcHHhhhccCCCCC--------CCCCChhhHHhHHHHHH
Q 044027 478 HVVAKVRTSY----LQFLLGEEWINKNEAKLKQFVASYVR-VAWGPVLKSLPENP--------TAVITPGQAKDYFKSFN 544 (638)
Q Consensus 478 yI~~~v~~Se----L~~lLG~~w~~~~~~~v~~~~~~Y~~-~sW~~vl~~L~d~~--------~~~~~r~~iKekfk~FN 544 (638)
.|...+.+=+ ....+++-.....+..+.-....|+. ..-+++.+.+.... ..+.+-..+++...+|-
T Consensus 501 ~iks~l~~~e~~~~~~e~lq~~ie~~~d~L~t~q~s~ll~~~GLs~~~q~~~~~~p~~~~ls~~~~l~s~~~~~~i~~fd 580 (655)
T KOG3758|consen 501 LIKSRLARYEFLDERVEMLQAKIEAYLDTLVTLQVSFLLENTGLSDLYQKFNMITPEDSVLSLDPDLESALLDEAIVKFD 580 (655)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHhcCcchhhhhccccccHHHHHHHHHHHH
Confidence 9988886532 11122222222222222222222222 22333333332211 12233334444444442
Q ss_pred HHHHHHHHhcccc------ccCChHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCCCc-ccccccCHHHHHHHH
Q 044027 545 STFEHVYKQHSRC------VVPYAKLREEIKETIARKLLAAYGRFYETHKVT-VGERNV-MLFVRFTPEDVDNYL 611 (638)
Q Consensus 545 ~~FEe~~~~Q~~w------~VpD~~LR~~Lr~~i~~~VlPaY~~F~~ry~~~-~~~kn~-~KyiKYtpe~le~~L 611 (638)
. ....-..+ .+.-|.+|+++++.....++-+|..+|++-.+. ..-|.| +--++++||++...+
T Consensus 581 ~----~l~~~~~~~lpq~q~l~sp~~r~~i~kr~~~~~~~aY~~i~~al~~~~ngy~dPve~ll~~~~dq~~tll 651 (655)
T KOG3758|consen 581 M----FLHAPLNLTLPQLQQLTSPMVRDEICKRSAKKFVLAYEIIYKALINPYNGYKDPVESLLHFSPDQVDTLL 651 (655)
T ss_pred H----HhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCChHHHHhcCCHHHhcccc
Confidence 2 12222222 345688999999999999999999999999987 445677 778888998876654
No 6
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.23 E-value=0.56 Score=52.68 Aligned_cols=346 Identities=15% Similarity=0.145 Sum_probs=174.0
Q ss_pred chHHHHHHHHHHHhhccCCCCccccccccccccChhhHHHHHHHHHHHHHHHHHhh---hcCC---chHHHHHHHHHHHH
Q 044027 41 SPVDQIIDAASGMITKWDPGSSTFARVTSLFYESKREAMQFLRCVDDLQKTMHLLV---SENS---SSAKLIEAQTLMQV 114 (638)
Q Consensus 41 ~nie~~l~~~e~vi~~~~~~~~~~~~~~~i~~g~~~~l~~yL~Av~~l~~a~~~l~---~~~~---~~~~l~~~~~Ll~~ 114 (638)
.|-..+...+...++-.-+.++ .+..|-+|+-.+ ..|++++++|..-+.... +++. .++...-++.|-..
T Consensus 127 ~Nrq~v~s~Ls~fVdd~iVpp~---lI~~I~~g~vne-~~f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~K 202 (683)
T KOG1961|consen 127 ENRQAVESKLSQFVDDLIVPPE---LIKTIVDGDVNE-PEFLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLK 202 (683)
T ss_pred HhHHHHHHHHHHHhccccCCHH---HHHHHHcCCCCc-hHHHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHH
Confidence 3444444445555554444442 223455665332 389999999988666543 1111 13455566778888
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCcccccCccccccCCCCCCCCCCCCCCCCcccccCCCCccccccCC-HHHHHHHHHHH
Q 044027 115 AMKRLQKEFYQILSMNRAHLDPESLSTRSSRTSARSSLSDYDDEGSPDQDDNEVRDAGDSIFEVEEAS-STAMADLKSIA 193 (638)
Q Consensus 115 am~~Le~EF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~L~~Ia 193 (638)
|+.+.-+..-.-+..-++|..- ..++ ..++-.-+.|.
T Consensus 203 Ai~kir~~IlqkI~~fRkp~tn------------------------------------------~qi~~Q~~LLK~k~~y 240 (683)
T KOG1961|consen 203 AIEKIREFILQKIKAFRKPMTN------------------------------------------YQIPQQHALLKYKFFY 240 (683)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC------------------------------------------cchHHHHHHHHHHHHH
Confidence 9999888777777777776431 1222 55666777777
Q ss_pred HHHHhcCC--chHHHHHHHHhhHH----HHHHHHHhc---------------CCC-ccChhh----------hh------
Q 044027 194 DCMINAGY--TKECIKVYKVIRKS----IIDEGIYRL---------------GVE-RVTSSQ----------IN------ 235 (638)
Q Consensus 194 ~~m~~~g~--~~e~~~~Y~~~R~~----~l~~sL~~L---------------~~e-~~~~~~----------v~------ 235 (638)
.++...+. ..|.+++|++-=+. +......+| |++ ..+.+- +.
T Consensus 241 ~FL~~n~r~~A~Elr~aYIdTM~k~y~~yF~sY~~~L~klq~~~iat~~D~~Gi~fn~skGl~~~fsk~~~~l~~r~tvF 320 (683)
T KOG1961|consen 241 EFLLENNRELALELRDAYIDTMNKIYLSYFKSYIRRLTKLQFEEIATKEDLMGIEFNASKGLFFFFSKLPEPLKNRSTVF 320 (683)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCccHHHHhccCcchhhccccee
Confidence 77765543 34667777654322 222222221 211 101000 00
Q ss_pred ---------c-------cch------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 044027 236 ---------K-------MDW------QVIDLKIKNWLEAVKIAMKTLFTGERILCDHVFASSESIRESCFTDISKEGAAI 293 (638)
Q Consensus 236 ---------k-------~~~------e~~e~~i~~wi~al~~~v~~L~~~E~~L~~~vf~~~~~~~~~~F~~i~~~~~~~ 293 (638)
+ +|. .-.|..+..|-.++ .-=..+|+-.|...|.-.+...+.+|.+|-.+++..
T Consensus 321 ~ig~R~~Iltq~d~p~lvphiae~~k~~~E~lfrs~~~al----~dn~tsEYlFl~efF~~~gd~~~~if~aIf~~tls~ 396 (683)
T KOG1961|consen 321 TIGKRLQILTQLDAPILVPHIAEANKYYIEALFRSLHLAL----LDNATSEYLFLEEFFAVSGDQAEDIFYAIFGKTLSV 396 (683)
T ss_pred ehhhhhhhhhhccccchhhhHHhcCCCcHHHHHHHHHHHH----HhcchhHHHHHHHHHhhcCchHHHHHHHHhcccHHH
Confidence 0 000 02344455555554 222357999999999655545667787775554444
Q ss_pred HhhhHHH-HHhhcCcCHHHHHHHHHHHHHH--------HhhhHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044027 294 LFAFPEL-VIKVKKAPAEKMFRVLDMYTAI--------AESWPVIESIFSFESTSAVRSKALTSLIKIGESARQMILDFE 364 (638)
Q Consensus 294 ll~f~~~-va~~kr~~~eklf~lLdmye~L--------~~~~p~i~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~~~ef~ 364 (638)
.+..-+. |+. ..+. +.+|-|.-.+ ....|.+++-..+-- ..+-.+|..+ |.-=.
T Consensus 397 ~~k~~~~~Is~----~~Da-Igvll~Iri~~k~ql~~~rR~VP~ld~y~n~v~-~~LWPRFq~V-----------~d~h~ 459 (683)
T KOG1961|consen 397 ILKYLESLISD----CYDA-IGVLLCIRIIHKLQLIAARRRVPALDSYWNSVL-IFLWPRFQLV-----------MDMHC 459 (683)
T ss_pred HHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHH-HHHHHHHHHH-----------HHHHH
Confidence 4432222 221 1111 1111111000 111222222111100 0011111111 11112
Q ss_pred HHHhhccCCCCC--CCCccchhHHHHHHHHHHHhhchHHHHHHHccCCCCCCCCCCCCccccCCCCCCCCCCCCCchHHH
Q 044027 365 THIQKDSSKTQV--PGGGVHHLTIDVMNYLTSLGDYSNILGDILADWDPPAKSTSSPLVSYFESPETTADNDSPAPAVTL 442 (638)
Q Consensus 365 ~~I~~~~s~~~~--~dG~VH~lT~~vmnyL~~L~ey~~~L~~iL~~~~~~~~~~~~~p~~~~~s~~~~~~~~~~~~~l~~ 442 (638)
+.++.-..++.+ .|.+-|++|+-.-.|+..+. .+=...+ ++ ..+..
T Consensus 460 eSlR~~di~~~~~~~d~rPHyitrRyAEf~ss~~-------~l~v~~~-----------------~~--------~~~~~ 507 (683)
T KOG1961|consen 460 ESLRKADITTLWEKLDTRPHYITRRYAEFLSSFL-------MLNVTYG-----------------NE--------QDVER 507 (683)
T ss_pred HHHHhcChhhcccccCCCchHHHHHHHHHHHHHH-------HHHHhcc-----------------cc--------chHHH
Confidence 233332223333 78999999987655554433 2211111 01 11445
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhHHHHHccHHHHHHHhhc
Q 044027 443 HVAWLIVSLLCKLDAKAKHYKDAHLAYLFLANNLQHVVAKVRT 485 (638)
Q Consensus 443 ~i~~ii~~L~~~Le~KSk~y~d~aL~~iFLlNN~~yI~~~v~~ 485 (638)
.+.++....+.-+.+-++.++++--+.+||.||+.+|..-+..
T Consensus 508 ll~~l~~~ve~fl~rmak~~~~~K~q~vFLiNNYdlil~vL~e 550 (683)
T KOG1961|consen 508 LLERLQMEVESFLLRMAKLFPTRKQQLVFLINNYDLILGVLME 550 (683)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccceeeeeccHHHHHHHHHh
Confidence 5555556666667777888999889999999999999988765
No 7
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=97.11 E-value=1 Score=53.38 Aligned_cols=214 Identities=14% Similarity=0.204 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCCCccchhHHHHHHHHHHHhhchHHHHHHHccCCCCCCCCCCCCc
Q 044027 344 KALTSLIKIGESARQMILDFETHIQKDS--SKTQVPGGGVHHLTIDVMNYLTSLGDYSNILGDILADWDPPAKSTSSPLV 421 (638)
Q Consensus 344 ~~~~~l~~L~~~~~~~~~ef~~~I~~~~--s~~~~~dG~VH~lT~~vmnyL~~L~ey~~~L~~iL~~~~~~~~~~~~~p~ 421 (638)
-+..++.++...+++.|..|++.--..- .+..... ...|+.|++.+..|-..++.++......
T Consensus 438 fl~~~L~~l~~~~k~~f~~fv~~Qi~~ie~~k~~~k~------r~GVl~~i~~fp~f~~~~E~~~~~~~~~--------- 502 (701)
T PF09763_consen 438 FLSNLLQKLQVRLKRLFDKFVDEQIKSIEETKVSKKK------RKGVLPFIKKFPEFVKRVESMFSGAERA--------- 502 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC------CCccchHHHHHHHHHHHHHHHHcccccc---------
Confidence 4677888888888888888877432211 2222211 1135566677777777788888643210
Q ss_pred cccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccc-----------cchhhHHHHHccHHHHHHHhhccchhh
Q 044027 422 SYFESPETTADNDSPAPAVTLHVAWLIVSLLCKLDAKAKHYK-----------DAHLAYLFLANNLQHVVAKVRTSYLQF 490 (638)
Q Consensus 422 ~~~~s~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~KSk~y~-----------d~aL~~iFLlNN~~yI~~~v~~SeL~~ 490 (638)
. .....+......++.++...|+..++.-+ ...-.+|.++=|+||+...+..-....
T Consensus 503 -------~-----~~r~~vd~aY~kl~~a~~~~l~~~a~~~~~~~~~~~~~dk~~~~~~v~~leN~~~~~e~l~~~~~~~ 570 (701)
T PF09763_consen 503 -------R-----EDRSLVDKAYEKLVRAMFDSLERIAKLSPKNSGSQDPEDKEKLNYHVVLLENYHHFYEELSQLKINS 570 (701)
T ss_pred -------c-----hHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCccccccchhhHHHHHHHHHHHHHHhhccchh
Confidence 0 01345888889999999999999997543 235579999999999999998754422
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH----hcHHhhhccCCC------C-C------CCCCChhhHHhHHHH-----HHHHHH
Q 044027 491 LLGEEWINKNEAKLKQFVASYVR----VAWGPVLKSLPE------N-P------TAVITPGQAKDYFKS-----FNSTFE 548 (638)
Q Consensus 491 lLG~~w~~~~~~~v~~~~~~Y~~----~sW~~vl~~L~d------~-~------~~~~~r~~iKekfk~-----FN~~FE 548 (638)
.| +.|.++-....+++...|.. -.++++..+... . + ...-+|+.+|.-++. .-...|
T Consensus 571 ~l-~~~~~~A~~~~~~~~~~Y~~~~l~r~~~kL~~F~~gve~l~~~~~~~ei~~~~~ySk~~l~kvl~~y~~kev~k~i~ 649 (701)
T PF09763_consen 571 VL-EEFRKEAKQIYDEHLEAYVTFLLRRPFGKLLDFFEGVEALLQTVSPEEISYQAAYSKQELKKVLKSYPSKEVRKGIE 649 (701)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccCchhcccchhccHHHHHHHHHhCChHHHHHHHH
Confidence 23 34666555555555555554 455565554321 1 1 023456666655544 456778
Q ss_pred HHHHhccccc-------cCChHHHHHHHHHHHHHHHHHHHHHHH
Q 044027 549 HVYKQHSRCV-------VPYAKLREEIKETIARKLLAAYGRFYE 585 (638)
Q Consensus 549 e~~~~Q~~w~-------VpD~~LR~~Lr~~i~~~VlPaY~~F~~ 585 (638)
.+|++=..-- ..+..|-+.+=.++.+..+-.|.+|++
T Consensus 650 ~l~krveKHf~~~~~~~~~~~~Ll~~vW~~~q~~~i~~~~~l~~ 693 (701)
T PF09763_consen 650 ALYKRVEKHFSRDADDPSFEEDLLQVVWSAMQEEFIRQYERLET 693 (701)
T ss_pred HHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877543323 234566666666666666666666654
No 8
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=82.12 E-value=1.2e+02 Score=36.41 Aligned_cols=132 Identities=18% Similarity=0.255 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHhcCCCccChhhhhccchHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 044027 187 ADLKSIADCMINAGYTKECIKVYKVIRKSIIDEGIYRLGVERVTSSQINKMDWQVIDLKIKNWLEAVKIAMKTLFTGERI 266 (638)
Q Consensus 187 ~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~e~~~~~~v~k~~~e~~e~~i~~wi~al~~~v~~L~~~E~~ 266 (638)
...+...+.+..-|...++.+-|..+|+..|.+-=....... .......|+..+=-.+..++..|.+
T Consensus 201 ~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~-------------~~~~~~~~L~~fyd~ll~~l~~E~~ 267 (766)
T PF10191_consen 201 DAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSD-------------QSQSFAEWLPSFYDELLSLLHQELK 267 (766)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556689999999999999987654322221110 0024566777765666788899999
Q ss_pred HHHhhcCCCchhhhhHHHHHHHHHHHHHhh-hHHHHHh-hcCcCHH-HHHHHHHHHHHHHhhhHHHHhhhcC
Q 044027 267 LCDHVFASSESIRESCFTDISKEGAAILFA-FPELVIK-VKKAPAE-KMFRVLDMYTAIAESWPVIESIFSF 335 (638)
Q Consensus 267 L~~~vf~~~~~~~~~~F~~i~~~~~~~ll~-f~~~va~-~kr~~~e-klf~lLdmye~L~~~~p~i~~lf~~ 335 (638)
-|.+||+.... +...+....+..|-. |..-|.. .++..+. ++..++++|.+-.+..-.++.+|..
T Consensus 268 w~~~vF~~~~~----~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~ 335 (766)
T PF10191_consen 268 WCSQVFPDESP----VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSS 335 (766)
T ss_pred HHHHHcCCchh----HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998553 223333333333333 4444432 2332333 4888999999888777777877775
No 9
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=80.83 E-value=5.3 Score=38.11 Aligned_cols=89 Identities=11% Similarity=0.140 Sum_probs=69.9
Q ss_pred cchHHHHHHHHHHHhhccCCCCccccccccccc-cChhhHHHHHHHHHHHHHHHHHhhhcC---CchHHHHHHHHHHHHH
Q 044027 40 VSPVDQIIDAASGMITKWDPGSSTFARVTSLFY-ESKREAMQFLRCVDDLQKTMHLLVSEN---SSSAKLIEAQTLMQVA 115 (638)
Q Consensus 40 ~~nie~~l~~~e~vi~~~~~~~~~~~~~~~i~~-g~~~~l~~yL~Av~~l~~a~~~l~~~~---~~~~~l~~~~~Ll~~a 115 (638)
+..+++..+.+...+.+|+.-....+ .+-. |+...-+.|+.-+.+|+..++|+..|. ....-+.+.+.++.+|
T Consensus 58 q~~L~~~ae~I~~~L~yF~~Ld~itr---~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRA 134 (157)
T PF04136_consen 58 QTRLEELAEEISEKLQYFEELDPITR---RLNSPGSSVNSDSFKPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRA 134 (157)
T ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHH---HHcCCCCcccchHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 45567778888888888887665431 1222 345678899999999999999998763 2356789999999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 044027 116 MKRLQKEFYQILSMNR 131 (638)
Q Consensus 116 m~~Le~EF~~lL~~~s 131 (638)
+.-+...|...|...+
T Consensus 135 l~lIk~y~~~~l~~~~ 150 (157)
T PF04136_consen 135 LTLIKNYVVNTLRSAT 150 (157)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998865
No 10
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=60.92 E-value=27 Score=36.64 Aligned_cols=108 Identities=12% Similarity=0.171 Sum_probs=65.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcHHhhhccCCCCCCCCCChhhHHhHHHHHHHHHHHHHHhcc------------cccc
Q 044027 492 LGEEWINKNEAKLKQFVASYVRVAWGPVLKSLPENPTAVITPGQAKDYFKSFNSTFEHVYKQHS------------RCVV 559 (638)
Q Consensus 492 LG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~~~~~r~~iKekfk~FN~~FEe~~~~Q~------------~w~V 559 (638)
++++.+..|...+++|..-|+ +.+.+++.|.+-..++++-..||=..+.|-.+++++..... .|.+
T Consensus 117 Ik~dYldvYa~lvk~YTd~yQ--~fn~~lSkls~~IsaG~DGn~VkFd~~~lk~~l~~~~~Ky~~~~~~~pa~~~~~i~~ 194 (308)
T TIGR02553 117 IGDSYLGVYENVVEGYTDFYQ--AFSDILSKMQDWISPGKDGNNVKLDVGKLKALLQQLIDHLPNQINSFPAQSDGGMQL 194 (308)
T ss_pred HHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhcccCCCCCeeeeCHHHHHHHHHHHHHHhccCccCCcccccccccc
Confidence 466788889999999998886 47889988865444444454566666666666666666555 3333
Q ss_pred CC-hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccCHHHHHHHHHhhh
Q 044027 560 PY-AKLREEIKETIARKLLAAYGRFYETHKVTVGERNVMLFVRFTPEDVDNYLSDLF 615 (638)
Q Consensus 560 pD-~~LR~~Lr~~i~~~VlPaY~~F~~ry~~~~~~kn~~KyiKYtpe~le~~L~~LF 615 (638)
+- .+.. ..++++.-.|-|+ +. . .+.+|+.++..|+.|+.+|=
T Consensus 195 ~s~~Ea~-~W~keLg~~v~~~---------~~-~---~~G~I~~dl~~i~~m~~sl~ 237 (308)
T TIGR02553 195 PKEADAR-RWRKELGLPVSCL---------QI-S---DSGVVTVDPTPLIKMRDDLP 237 (308)
T ss_pred CcHHHHH-HHHHHhCCCCccc---------cc-c---CCCeEEeChHHHHHHHHhcC
Confidence 32 1222 2222221111111 00 1 12289999999999999983
No 11
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.65 E-value=4.2e+02 Score=31.14 Aligned_cols=211 Identities=14% Similarity=0.188 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC--C-CCCCCCccchhHHHHHHHHHHHhhchHHHHHHHccCCCCCCCCCCCCc
Q 044027 345 ALTSLIKIGESARQMILDFETHIQKDSS--K-TQVPGGGVHHLTIDVMNYLTSLGDYSNILGDILADWDPPAKSTSSPLV 421 (638)
Q Consensus 345 ~~~~l~~L~~~~~~~~~ef~~~I~~~~s--~-~~~~dG~VH~lT~~vmnyL~~L~ey~~~L~~iL~~~~~~~~~~~~~p~ 421 (638)
+.-.+..|.-.++.-|..|+..-...-. + ..-.-+||-| |+-.+..|-...+.|+.+..
T Consensus 605 ls~tlgsllv~VkrqFdrfiq~qc~qieevki~kksk~gILP-------yv~rFenfa~raE~if~nae----------- 666 (867)
T KOG2148|consen 605 LSLTLGSLLVRVKRQFDRFIQNQCSQIEEVKIAKKSKIGILP-------YVFRFENFARRAEIIFENAE----------- 666 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------cHHHHHHHHHHHHHHHhhhh-----------
Confidence 3444455555666677777654332211 0 1112344444 66677777778888886421
Q ss_pred cccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHccHHHHHHHhhccchhhhhhhhHHHHHH
Q 044027 422 SYFESPETTADNDSPAPAVTLHVAWLIVSLLCKLDAKAKHYKDAHLAYLFLANNLQHVVAKVRTSYLQFLLGEEWINKNE 501 (638)
Q Consensus 422 ~~~~s~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~KSk~y~d~aL~~iFLlNN~~yI~~~v~~SeL~~lLG~~w~~~~~ 501 (638)
..+.+......++.+...+++.-|..|+... +.+-+|-|+|++...+-+ |.-..-+.-...+.
T Consensus 667 --------------rRtdlekaYtklvravfvgiek~Aqq~pKtp-~dVv~mENyh~~y~tLs~--Lkis~lda~kkeak 729 (867)
T KOG2148|consen 667 --------------RRTDLEKAYTKLVRAVFVGIEKIAQQDPKTP-ADVVLMENYHHFYATLSD--LKISCLDAAKKEAK 729 (867)
T ss_pred --------------hcchHHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHhhHHHHHHHHHH--HhccchhHHHHHHH
Confidence 1234777778889999999999998887632 457799999999877643 33222222333345
Q ss_pred HHHHHHHHHHHHhcHHhhhccCCC--CC-------C---------CCCChhhHH----hHH-HHHHHHHHHHHHhccccc
Q 044027 502 AKLKQFVASYVRVAWGPVLKSLPE--NP-------T---------AVITPGQAK----DYF-KSFNSTFEHVYKQHSRCV 558 (638)
Q Consensus 502 ~~v~~~~~~Y~~~sW~~vl~~L~d--~~-------~---------~~~~r~~iK----ekf-k~FN~~FEe~~~~Q~~w~ 558 (638)
.....+.+.|+..+.|..+..|.. ++ + -..+|+.++ +-- +.--.++|.+|++=..--
T Consensus 730 a~~~dhl~ayV~~~~GrPLekln~Ffe~v~~~vaqGirpeeiSYQ~aFsk~elrkvi~qypgkEVkKglenlYKKveKnL 809 (867)
T KOG2148|consen 730 ALYADHLAAYVKESMGRPLEKLNTFFEGVNNKVAQGIRPEEISYQLAFSKQELRKVIKQYPGKEVKKGLENLYKKVEKNL 809 (867)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHhhHHHHhcCCChhhhhHHHHhhHHHHHHHHHHcchhhHHHHHHHHHHHHHHhh
Confidence 566677778877666666554421 01 0 011222222 211 225567888887654444
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044027 559 VPYAKLREEIKETIARKLLAAYGRFYETHKVT 590 (638)
Q Consensus 559 VpD~~LR~~Lr~~i~~~VlPaY~~F~~ry~~~ 590 (638)
+....|-..+=....+-.|--|..|-+.-...
T Consensus 810 ~aeenLLqvvW~~mqeeFi~qy~~f~~lIakc 841 (867)
T KOG2148|consen 810 LAEENLLQVVWHKMQEEFIDQYESFEQLIAKC 841 (867)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777787776654443
No 12
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=50.58 E-value=15 Score=41.45 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=53.8
Q ss_pred hhhHHhHHHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCCcccccccCHHHHHHH
Q 044027 533 PGQAKDYFKSFNSTFEHVYKQHSRCVVPYAKLREEIKETIARKLLAAYGRFYETHKVT--VGERNVMLFVRFTPEDVDNY 610 (638)
Q Consensus 533 r~~iKekfk~FN~~FEe~~~~Q~~w~VpD~~LR~~Lr~~i~~~VlPaY~~F~~ry~~~--~~~kn~~KyiKYtpe~le~~ 610 (638)
|..+-.+.+.|++.|+|+.+.=. +....+..-.|+++|-..... +|.+--.-|+.++-..+|++
T Consensus 97 r~~l~s~~r~F~E~f~ell~~ae--------------~~l~~mF~~tYg~ly~qn~~~~~dlFtel~~y~~~~~~nlee~ 162 (563)
T KOG3821|consen 97 RFVLASNARKFDEFFLELLRNAE--------------NSLNAMFSKTYGSLYPQNAELFNDLFTELKLYYVGSNVNLEET 162 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 55667788999999999987533 345567788899888766655 44444557888999999999
Q ss_pred HHhhhC
Q 044027 611 LSDLFF 616 (638)
Q Consensus 611 L~~LFe 616 (638)
|++||.
T Consensus 163 l~eff~ 168 (563)
T KOG3821|consen 163 LNEFFA 168 (563)
T ss_pred HHHHHH
Confidence 999985
No 13
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=48.52 E-value=1.1e+02 Score=37.03 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=35.2
Q ss_pred hhhHHhHHHHHHHHHHHHHHhccccccC--ChHHHHHHHHHHHHHHHHHHHHHH
Q 044027 533 PGQAKDYFKSFNSTFEHVYKQHSRCVVP--YAKLREEIKETIARKLLAAYGRFY 584 (638)
Q Consensus 533 r~~iKekfk~FN~~FEe~~~~Q~~w~Vp--D~~LR~~Lr~~i~~~VlPaY~~F~ 584 (638)
|+.|-...|.-| |++++.+|-.--+- -| |.+.+|.+....|||+|.+=-
T Consensus 1014 kenI~ql~KSkn--l~dtvar~i~~~~Qtsg~-lQ~a~resm~SsviPafEKSc 1064 (1283)
T KOG1916|consen 1014 KENINQLLKSKN--LEDTVARQIQAQFQTSGP-LQEALRESMESSVIPAFEKSC 1064 (1283)
T ss_pred HHHHHHHHhhcc--HHHHHHHHHHHHHhccch-HHHHHHHHhhhhccHHHHHHH
Confidence 455555566656 77777766444442 33 999999999999999998753
No 14
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=47.10 E-value=3.6e+02 Score=30.77 Aligned_cols=89 Identities=17% Similarity=0.242 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHHHhhhHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccchhHHH
Q 044027 308 PAEKMFRVLDMYTAIAESWPVIESIFSFESTSAVRSKALTSLIKIGESARQMILDFETHIQKDSSKTQVPGGGVHHLTID 387 (638)
Q Consensus 308 ~~eklf~lLdmye~L~~~~p~i~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~~~ef~~~I~~~~s~~~~~dG~VH~lT~~ 387 (638)
+++..|.+|+.|..|. ..|.+...+ ......++..+.+-+..+=..|...-.......+|..-+..| +..
T Consensus 327 s~~~~~~ll~~f~~L~-~Rp~I~~~l--------~~~~~~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Pp-vag 396 (579)
T PF08385_consen 327 SPEEAFRLLQKFKSLL-NRPRIRKAL--------QEKYEQLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPP-VAG 396 (579)
T ss_pred CHHHHHHHHHHHHhHh-cchHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCcH-HHH
Confidence 7888999999999886 466665433 344555555555555544444444332112234444555555 444
Q ss_pred HHHHHHHHh----hchHHHHHHH
Q 044027 388 VMNYLTSLG----DYSNILGDIL 406 (638)
Q Consensus 388 vmnyL~~L~----ey~~~L~~iL 406 (638)
.+.+.+.|. .+...+..++
T Consensus 397 ~i~w~r~L~~ri~~~~~~~~~~~ 419 (579)
T PF08385_consen 397 AIIWARQLERRIKEPMQRLKSLL 419 (579)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhc
Confidence 555566555 3444455554
No 15
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=36.23 E-value=11 Score=33.99 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=16.4
Q ss_pred CCCCCcccccccCHHHHH
Q 044027 591 VGERNVMLFVRFTPEDVD 608 (638)
Q Consensus 591 ~~~kn~~KyiKYtpe~le 608 (638)
++-+||+||.|||-+++.
T Consensus 56 DYv~nP~KwTkYSL~dv~ 73 (115)
T PF15264_consen 56 DYVRNPEKWTKYSLDDVS 73 (115)
T ss_pred CCcCCcccceeeecCCCc
Confidence 788999999999999984
No 16
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=35.67 E-value=62 Score=37.36 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=49.9
Q ss_pred hhhHHhHHHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCCcccccccCHHHHHHH
Q 044027 533 PGQAKDYFKSFNSTFEHVYKQHSRCVVPYAKLREEIKETIARKLLAAYGRFYETHKVT--VGERNVMLFVRFTPEDVDNY 610 (638)
Q Consensus 533 r~~iKekfk~FN~~FEe~~~~Q~~w~VpD~~LR~~Lr~~i~~~VlPaY~~F~~ry~~~--~~~kn~~KyiKYtpe~le~~ 610 (638)
+..+..+.+.|.+.|+++.+.= .+....+..-.|+.+|...... ++...-..|+..+.-.|+++
T Consensus 89 ~~~l~~~~~~F~~~f~~ll~~s--------------e~~~~~~F~~~Y~~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~ 154 (557)
T PF01153_consen 89 QHLLSTRARKFDEFFRELLRQS--------------ENSLHSMFSRTYGSLYPQNRPIFQDLFTDLRRYYLGSNVNLEEA 154 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTHHHHCTHHHHHHHHHHHHHHHCCS-S-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 3456678889999999887632 3344566667788877776655 45555667888899999999
Q ss_pred HHhhhCC
Q 044027 611 LSDLFFE 617 (638)
Q Consensus 611 L~~LFeg 617 (638)
++++|..
T Consensus 155 l~~Ff~~ 161 (557)
T PF01153_consen 155 LNEFFDR 161 (557)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999863
No 17
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=32.09 E-value=9.3e+02 Score=28.63 Aligned_cols=103 Identities=18% Similarity=0.358 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHhcC-CCccChhhhhccchHHH----------HHHHHhHHHHHH
Q 044027 186 MADLKSIADCMINAGYTKECIKVYKVIRKSIIDEGIYRLG-VERVTSSQINKMDWQVI----------DLKIKNWLEAVK 254 (638)
Q Consensus 186 i~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~-~e~~~~~~v~k~~~e~~----------e~~i~~wi~al~ 254 (638)
...++.+|..|..-+.+..|++.|++.+.-..+. ..++ .+.+..+. .|+.+ ...+......+
T Consensus 128 ~~~M~~~A~vL~~fngg~~~i~~fi~k~~~f~~~--~~~~~~~~~~~~~----~~~~l~d~~~~~~~~~~~l~~~~~~i- 200 (710)
T PF07393_consen 128 YERMKEFAKVLLEFNGGSSCIDFFINKHEFFIDE--DQLDESNGFEDEE----IWEKLSDPDSHPPINEESLDAFFEDI- 200 (710)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHhChhhhhh--hhhccccccchhH----HHHhccCcccccccchHHHHHHHHHH-
Confidence 4778889999988777779999999987655521 1111 00110000 01111 12233334444
Q ss_pred HHHHHHHHHHHHHHHhhcCCCch----hhhhHHHHHHHHHHHHHhhhH
Q 044027 255 IAMKTLFTGERILCDHVFASSES----IRESCFTDISKEGAAILFAFP 298 (638)
Q Consensus 255 ~~v~~L~~~E~~L~~~vf~~~~~----~~~~~F~~i~~~~~~~ll~f~ 298 (638)
...+..|..+++.||+.... ..+.+|.+...+-+..+|.-+
T Consensus 201 ---~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~~i~~lL~~a 245 (710)
T PF07393_consen 201 ---RDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQEYIESLLEEA 245 (710)
T ss_pred ---HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999987653 345566666666666666543
No 18
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=32.08 E-value=72 Score=37.09 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhcccC-CCCCcccccccCHHHHHHHHHhhhCC
Q 044027 571 TIARKLLAAYGRFYETHKVTV-GERNVMLFVRFTPEDVDNYLSDLFFE 617 (638)
Q Consensus 571 ~i~~~VlPaY~~F~~ry~~~~-~~kn~~KyiKYtpe~le~~L~~LFeg 617 (638)
.--..|.|.|-+|++.+.-.+ ..+.-+.|+|+.|++.|+.|.-|=.-
T Consensus 135 tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 135 TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 334579999999999987642 23445789999999999999877543
No 19
>PRK15330 cell invasion protein SipD; Provisional
Probab=31.53 E-value=84 Score=33.46 Aligned_cols=64 Identities=11% Similarity=0.176 Sum_probs=51.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcHHhhhccCCCCCCCCCChhhHHhHHHHHHHHHHHHHHhccc
Q 044027 491 LLGEEWINKNEAKLKQFVASYVRVAWGPVLKSLPENPTAVITPGQAKDYFKSFNSTFEHVYKQHSR 556 (638)
Q Consensus 491 lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~~~~~r~~iKekfk~FN~~FEe~~~~Q~~ 556 (638)
-++++.+..|...+++|..-|+ +.+.+++-|.+-..++++...||=+++.|-.+++++....+.
T Consensus 144 sIk~dYldvYa~vVk~YTd~yQ--sfne~lSkls~~IsaGsDGntIkFd~~slk~~i~~lidKY~~ 207 (343)
T PRK15330 144 AIGDSYLGVYENVVAVYTDFYQ--AFSDILSKMGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKYNQ 207 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhcccCCCCCeeeecHHHHHHHHHHHHHhccc
Confidence 3577899999999999998886 589999988755455667777888889999999998877664
No 20
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.72 E-value=5.9e+02 Score=24.94 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=18.2
Q ss_pred ccccCCHHHHHHHHHHHHHHH
Q 044027 177 EVEEASSTAMADLKSIADCMI 197 (638)
Q Consensus 177 ~~~~~~~~~i~~L~~Ia~~m~ 197 (638)
.+|.+.|+++.+|-..++.+.
T Consensus 118 ~ip~vDp~VL~DlE~~~~el~ 138 (222)
T KOG4514|consen 118 NIPEVDPSVLSDLELEAQELA 138 (222)
T ss_pred CCCCCChHHHHHHHHHHHHHH
Confidence 388999999999998888875
No 21
>PHA03373 tegument protein; Provisional
Probab=26.88 E-value=2.1e+02 Score=28.94 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=37.7
Q ss_pred HHHHHHHH--hhHHHHHHHHHh-cCCCccChhhhhccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 044027 204 ECIKVYKV--IRKSIIDEGIYR-LGVERVTSSQINKMDWQVIDLKIKNWLEAVKIAMKTLFTGERILCD 269 (638)
Q Consensus 204 e~~~~Y~~--~R~~~l~~sL~~-L~~e~~~~~~v~k~~~e~~e~~i~~wi~al~~~v~~L~~~E~~L~~ 269 (638)
...-+|.. .|..+|.++|+. .-..-.+..++. -.+-++-++++.|++..|+-+|..+|+
T Consensus 70 ~LLP~Yk~c~~r~~~L~r~L~~~C~pH~r~AaevE-------c~KsqrIleaLDVvilKl~vGEFtmse 131 (247)
T PHA03373 70 QLLPIYKQCKSRYTFLERCLANGCPPHVRPAAEVE-------CMKSKRILEALDVVILKLLVGEFTMSE 131 (247)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccCccccccHHHHH-------HHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 34556654 466678999887 333222333332 235677789999999888888876664
No 22
>PHA01746 hypothetical protein
Probab=24.85 E-value=28 Score=30.89 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=13.2
Q ss_pred HHHHHHhhcccCCCCCcccccccCHHH
Q 044027 580 YGRFYETHKVTVGERNVMLFVRFTPED 606 (638)
Q Consensus 580 Y~~F~~ry~~~~~~kn~~KyiKYtpe~ 606 (638)
-..|++||.+. -.||+||+|.+
T Consensus 76 Ia~FLeKYS~~-----LnkYVkFs~~n 97 (131)
T PHA01746 76 IAEFLEKYSDF-----LNEYVKFTPRN 97 (131)
T ss_pred HHHHHHHHHHH-----HHHHeeeccCC
Confidence 34566666653 33677777754
No 23
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.73 E-value=2.7e+02 Score=32.42 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=38.6
Q ss_pred HHHHHccHH-HHHHHhhcc-chhh--hhhhhHHHHHHHHHHHHHHHHHHhcHHhhhccCCCCCCCCCChhhHHhHHHHHH
Q 044027 469 YLFLANNLQ-HVVAKVRTS-YLQF--LLGEEWINKNEAKLKQFVASYVRVAWGPVLKSLPENPTAVITPGQAKDYFKSFN 544 (638)
Q Consensus 469 ~iFLlNN~~-yI~~~v~~S-eL~~--lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~~~~~r~~iKekfk~FN 544 (638)
-||+.||.| ||...|-.| ++.- -+|+ ....+ ....-...|+ +|-+ ++-.++++||.|-
T Consensus 968 LiffiNnLHahIMeailhStgleFehqieE--aKdld-eLiiiHdehL--atih-------------dhClLrdefkafk 1029 (1121)
T KOG4344|consen 968 LIFFINNLHAHIMEAILHSTGLEFEHQIEE--AKDLD-ELIIIHDEHL--ATIH-------------DHCLLRDEFKAFK 1029 (1121)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhh--hcCHH-HHHHHHHHHH--HHHH-------------HhhhHHHHHHHHH
Confidence 689999986 777777655 3332 2222 11111 1112222444 4543 3556788999999
Q ss_pred HHHHHHHHh
Q 044027 545 STFEHVYKQ 553 (638)
Q Consensus 545 ~~FEe~~~~ 553 (638)
.+.+.++..
T Consensus 1030 eAidkifhL 1038 (1121)
T KOG4344|consen 1030 EAIDKIFHL 1038 (1121)
T ss_pred HHHHHHHHH
Confidence 998887653
No 24
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=20.24 E-value=87 Score=24.95 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=16.0
Q ss_pred CCCCCcccccccCHHHHHHHHHhhhC
Q 044027 591 VGERNVMLFVRFTPEDVDNYLSDLFF 616 (638)
Q Consensus 591 ~~~kn~~KyiKYtpe~le~~L~~LFe 616 (638)
.+.+.+-..++++++|||++|-+|-.
T Consensus 17 P~~~~~P~W~~~~~~eVe~~I~klak 42 (60)
T PF08069_consen 17 PYRRSPPSWLKYSPEEVEELIVKLAK 42 (60)
T ss_dssp -S-SS--TT--S-HHHHHHHHHHHCC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 44556668999999999999999854
Done!