Query 044027
Match_columns 638
No_of_seqs 196 out of 495
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 5E-105 2E-109 903.6 36.6 525 50-618 2-570 (571)
2 2b1e_A Exocyst complex compone 100.0 4.9E-97 2E-101 835.2 37.4 521 40-615 2-563 (564)
3 2d2s_A Exocyst complex compone 68.9 88 0.003 30.4 19.6 97 186-301 91-187 (235)
4 2p7n_A Pathogenicity island 1 39.9 1.1E+02 0.0036 32.1 9.2 74 477-554 179-252 (407)
5 4e9f_A Methyl-CPG-binding doma 27.9 38 0.0013 31.1 3.3 50 543-614 32-81 (161)
6 2x5h_A ORF 131; viral protein; 26.6 15 0.0005 29.7 0.2 20 580-604 77-96 (97)
7 3nft_A Translocator protein BI 21.9 53 0.0018 32.9 3.1 103 493-614 133-235 (303)
8 2wvq_A Small S protein; prion- 20.7 1.5E+02 0.0052 28.5 6.2 100 515-614 58-167 (225)
9 3odn_A Dally-like protein; alp 19.1 37 0.0013 36.9 1.5 69 534-616 75-145 (506)
10 2ket_A Cathelicidin-6; antimic 17.6 76 0.0026 19.4 1.9 16 539-554 2-17 (27)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=5.3e-105 Score=903.65 Aligned_cols=525 Identities=19% Similarity=0.287 Sum_probs=449.7
Q ss_pred HHHHhhccCCCCccccccccccccChhhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044027 50 ASGMITKWDPGSSTFARVTSLFYESKREAMQFLRCVDDLQKTMHLLVSENSSSAKLIEAQTLMQVAMKRLQKEFYQILSM 129 (638)
Q Consensus 50 ~e~vi~~~~~~~~~~~~~~~i~~g~~~~l~~yL~Av~~l~~a~~~l~~~~~~~~~l~~~~~Ll~~am~~Le~EF~~lL~~ 129 (638)
||+||++||+..++| .+||+||..+++.||+||++|+++++||..+++.+..+.++++|+++||.+||+||++||.+
T Consensus 2 ae~v~~~~d~~~~~e---~~i~~gp~~~l~~yL~av~~l~~a~~~~~~~~~~s~~l~~~~~Ll~~a~~~Le~eF~~lL~~ 78 (571)
T 2pft_A 2 SDHVISYYHVASDTE---KIIREGPTGRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTR 78 (571)
T ss_dssp -CTTSTHHHHHHHHH---HHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhh---hhhhcCcHhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999998877 67999999999999999999999999999888777889999999999999999999999999
Q ss_pred hCCCCCCCcccccCccccccCCCCCCCCCCCCCCCCcccccCCCCccccccCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 044027 130 NRAHLDPESLSTRSSRTSARSSLSDYDDEGSPDQDDNEVRDAGDSIFEVEEASSTAMADLKSIADCMINAGYTKECIKVY 209 (638)
Q Consensus 130 ~s~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~Ia~~m~~~g~~~e~~~~Y 209 (638)
++.|++|+.++..++. +++. +......++.+|++++.+|+.||+||+.+||.++|+++|
T Consensus 79 ~~~~~~p~~ll~~~~~----------~~~~-----------~~~~~~~~~~~~~~~~~~L~~Ia~~m~~~g~~~~~~~~Y 137 (571)
T 2pft_A 79 HSKVVSPVLLLDLISA----------DDEL-----------EVQEDVVLEHLPESVLRDVVRISRWLVEYGRNQDFMNVY 137 (571)
T ss_dssp HCCCCCHHHHHHHHHH----------TCCC-----------C--------SSCHHHHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred cCcCCChHHHHhcccc----------cccc-----------CccccccccCCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 9999999987654331 0000 000112366899999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHhcC------------------------CCccChhhhhccchHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 044027 210 KVIRKSIIDEGIYRLG------------------------VERVTSSQINKMDWQVIDLKIKNWLEAVKIAMKTLFTGER 265 (638)
Q Consensus 210 ~~~R~~~l~~sL~~L~------------------------~e~~~~~~v~k~~~e~~e~~i~~wi~al~~~v~~L~~~E~ 265 (638)
+++|+++|+++|..|+ .++.+..++++ +|+.++.+|+.|+++++++++ ||++||
T Consensus 138 ~~~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~i~~wi~~~~~~~~-l~~~Er 215 (571)
T 2pft_A 138 YQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPG-RDDMLDVETDAYIHCVSAFVK-LAQSEY 215 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccc-chHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 9999999999999993 33444444544 799999999999999977665 899999
Q ss_pred HHHHhhcCCCchhhhhHHHHHHHHHHHHHhhhHHHHH-hhcCcCH--HHHHHHH---HHHHHHHhhhHHHHhhhcCCchH
Q 044027 266 ILCDHVFASSESIRESCFTDISKEGAAILFAFPELVI-KVKKAPA--EKMFRVL---DMYTAIAESWPVIESIFSFESTS 339 (638)
Q Consensus 266 ~L~~~vf~~~~~~~~~~F~~i~~~~~~~ll~f~~~va-~~kr~~~--eklf~lL---dmye~L~~~~p~i~~lf~~~~~~ 339 (638)
+||++||+. ..++.||.+||++++.+|++|+++|+ ..+| +| +++|.++ ++|+.|.+++|+|+.+|.|.++
T Consensus 216 ~L~~~vf~~--~~~~~~F~~i~~~~~~~ll~f~e~v~~~~kr-~~~~~~~~~~l~l~~~l~~l~~l~p~~~~~f~g~~~- 291 (571)
T 2pft_A 216 RLLMEIIPE--HHQKKTFDSLIQDALDGLMLEGENIVSAARK-AIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQGTAA- 291 (571)
T ss_dssp HHHHHHSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCCSTTTTHHHHHHHHHHHHHHHHHHTTTSCH-
T ss_pred HHHHHHcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHccCch-
Confidence 999999987 56889999999999999999999997 5777 77 5555554 5555599999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCC-CCccchhHHHHHHHHHHHhhchHHHHHHHccCCCCCCCCC
Q 044027 340 AVRSKALTSLIKIGESARQMILDFETHIQKDS-SKTQVP-GGGVHHLTIDVMNYLTSLGDYSNILGDILADWDPPAKSTS 417 (638)
Q Consensus 340 ~vr~~~~~~l~~L~~~~~~~~~ef~~~I~~~~-s~~~~~-dG~VH~lT~~vmnyL~~L~ey~~~L~~iL~~~~~~~~~~~ 417 (638)
.++.++.+++++|+++++++|.||++.|++++ ++.+++ ||+|||+|+||||||+.|++|+++|+.+|.++....
T Consensus 292 ~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~y~~~l~~il~~~~~~~---- 367 (571)
T 2pft_A 292 STKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQETSS---- 367 (571)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHHTHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHhhHHHHHHHHhccCCCc----
Confidence 56899999999999999999999999999997 666555 999999999999999999999999999998774311
Q ss_pred CCCccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHccHHHHHHHhhccchhhhhh---h
Q 044027 418 SPLVSYFESPETTADNDSPAPAVTLHVAWLIVSLLCKLDAKAKHYKDAHLAYLFLANNLQHVVAKVRTSYLQFLLG---E 494 (638)
Q Consensus 418 ~~p~~~~~s~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~KSk~y~d~aL~~iFLlNN~~yI~~~v~~SeL~~lLG---~ 494 (638)
+ . .+..++.+.++|+.+|.++|++|+.|||+|||.|+|++|++||||||+|||+++|++|+|..+|| +
T Consensus 368 --~--~-----~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s~l~~llg~~~~ 438 (571)
T 2pft_A 368 --S--A-----TSYSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQK 438 (571)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTSTHHHHHHTTCT
T ss_pred --c--c-----ccCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhhHHHHHHHHhccchHHHhCcchh
Confidence 0 0 00000123578999999999999999999999999999999999999999999999999999999 6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcHHhhhccCCCCCC-----C----CCChhhHHhHHHHHHHHHHHHHHhccccccCChHHH
Q 044027 495 EWINKNEAKLKQFVASYVRVAWGPVLKSLPENPT-----A----VITPGQAKDYFKSFNSTFEHVYKQHSRCVVPYAKLR 565 (638)
Q Consensus 495 ~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~-----~----~~~r~~iKekfk~FN~~FEe~~~~Q~~w~VpD~~LR 565 (638)
+|+++++.++++|++.| +.+|++|++||.+++. + +++|+.|||||++||.+|||+|++|+.|+||||+||
T Consensus 439 ~~~~~~~~~i~~~~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ls~~~r~~iKe~fk~Fn~~Fee~~~~q~~w~VpD~~LR 517 (571)
T 2pft_A 439 TAERSYREHIEQQIQTY-QRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAIPDTEQR 517 (571)
T ss_dssp THHHHHHHHHHHHHHHH-HGGGHHHHTTTSGGGSCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcCCCCCCcCcccHHHHHHHHHHHHHHHHHHHHhCCcccCcCHHHH
Confidence 89999999999999999 8899999999987641 1 236889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccCHHHHHHHHHhhhCCC
Q 044027 566 EEIKETIARKLLAAYGRFYETHKVTVGERNVMLFVRFTPEDVDNYLSDLFFER 618 (638)
Q Consensus 566 ~~Lr~~i~~~VlPaY~~F~~ry~~~~~~kn~~KyiKYtpe~le~~L~~LFeg~ 618 (638)
++||.+|.++|+|+|++||+||++.+|+|||+|||||||+|||++|++||+|+
T Consensus 518 ~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~~L~~LFeg~ 570 (571)
T 2pft_A 518 DKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDRLFDTS 570 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999996
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=4.9e-97 Score=835.16 Aligned_cols=521 Identities=16% Similarity=0.207 Sum_probs=433.4
Q ss_pred cchHHHHHHHHHHHhhccCCCCccccccccccccCh-hhHHHHHHHHHHHHHHHHHhhhcCCch-------HHHHHHHHH
Q 044027 40 VSPVDQIIDAASGMITKWDPGSSTFARVTSLFYESK-REAMQFLRCVDDLQKTMHLLVSENSSS-------AKLIEAQTL 111 (638)
Q Consensus 40 ~~nie~~l~~~e~vi~~~~~~~~~~~~~~~i~~g~~-~~l~~yL~Av~~l~~a~~~l~~~~~~~-------~~l~~~~~L 111 (638)
++|||++|+++++|.++++..++.| .+|..||. .+++.||+||++|++|++||+.+|+.+ +.+.++.+|
T Consensus 2 ~~NId~~l~~i~~v~~~~~~~~~~e---~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L 78 (564)
T 2b1e_A 2 HMNIESTLNSVASVKDLANEASKYE---IILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQL 78 (564)
T ss_dssp ------CCGGGCCHHHHHHHHHHHH---HHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHH
Confidence 6899999999999999999988887 67889996 999999999999999999999877543 469999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCcccccCccccccCCCCCCCCCCCCCCCCcccccCCCCccccccCCHHHHHHHHH
Q 044027 112 MQVAMKRLQKEFYQILSMNRAHLDPESLSTRSSRTSARSSLSDYDDEGSPDQDDNEVRDAGDSIFEVEEASSTAMADLKS 191 (638)
Q Consensus 112 l~~am~~Le~EF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~ 191 (638)
+++|+.+||.||..||. ++.|++|..+... ..+++.+|++++.+|+.
T Consensus 79 ~~~g~~~L~~~F~~lL~-~s~p~~p~~~i~k--------------------------------~~p~p~l~~~~l~~L~~ 125 (564)
T 2b1e_A 79 IKRSEAQLRVYFISILN-SIKPFDPQINITK--------------------------------KMPFPYYEDQQLGALSW 125 (564)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCCCCHHHHHHH--------------------------------TCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hCCCCCHHHhhcc--------------------------------CCCCCCCCHHHHHHHHH
Confidence 99999999999999999 5899999876321 02488999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHhhHHHHHHHHHhcCCCccChhhhhccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 044027 192 IADCMINAGYTKECIKVYKVIRKSIIDEGIYRLGVERVTSSQINKMDWQVIDLKIKNWLEAVKIAMKTLFTGERILCDHV 271 (638)
Q Consensus 192 Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~e~~~~~~v~k~~~e~~e~~i~~wi~al~~~v~~L~~~E~~L~~~v 271 (638)
||+||+.+|+.++|+++|+++|+.+|+++|+.|.....+..+.++++|+.++.+|..|++++ ..|+.+|+.||++|
T Consensus 126 Ia~~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~----~~l~~~E~~L~~~v 201 (564)
T 2b1e_A 126 ILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEAL----LGFIANEKSLVDDL 201 (564)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976655566677899999999999999998 68999999999999
Q ss_pred cCCCchhhhhHHHHHHHHHHHHHhhhHHH-HHhhcCcCH-HHHHHHHHHHHHHHhhhHHHHhhhcCCchHHHHHHHHHHH
Q 044027 272 FASSESIRESCFTDISKEGAAILFAFPEL-VIKVKKAPA-EKMFRVLDMYTAIAESWPVIESIFSFESTSAVRSKALTSL 349 (638)
Q Consensus 272 f~~~~~~~~~~F~~i~~~~~~~ll~f~~~-va~~kr~~~-eklf~lLdmye~L~~~~p~i~~lf~~~~~~~vr~~~~~~l 349 (638)
|+.+++.++.||..|+++++..+....+. .+.+++ ++ +++|.+|+||++|.++ ..+|.|..+.. +.++.+++
T Consensus 202 f~~~~~~~~~~f~~i~~~~l~~~~~~l~~~~~~~k~-~~~~~~f~~l~~~~~l~~~----~~~~~~~~~~~-~~~~~~~l 275 (564)
T 2b1e_A 202 YSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRS-NLENFGFFSFELVESINDV----KKSLRGKELQN-YNLLQDCT 275 (564)
T ss_dssp SCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCTHHHHHHHHHHHH----HHHTTTCCCTT-HHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChhhcchhHHHHHHHHHHH----HHHHcccccch-HHHHHHHH
Confidence 99977789999999999999854443332 224677 77 8999999999999775 47888876655 38999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC--CCCCCccchhHHHHHHHHHHHhhchHHHHHHHcc-----CCCCCCCCCCCCcc
Q 044027 350 IKIGESARQMILDFETHIQKDSSKT--QVPGGGVHHLTIDVMNYLTSLGDYSNILGDILAD-----WDPPAKSTSSPLVS 422 (638)
Q Consensus 350 ~~L~~~~~~~~~ef~~~I~~~~s~~--~~~dG~VH~lT~~vmnyL~~L~ey~~~L~~iL~~-----~~~~~~~~~~~p~~ 422 (638)
++|+++++++|.||++.|+.++++. .|+||||||+|+||||||+.|++|+++|..+|.+ |...+ .+..
T Consensus 276 ~~L~~~~~~~~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~~y~~~l~~~l~~~~~~~~~~~~-----~~~~ 350 (564)
T 2b1e_A 276 QEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSN-----YKEK 350 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHGGGHHHHHHHTTTCCGGGTSCTT-----CCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCccc-----cccc
Confidence 9999999999999999999987643 3689999999999999999999999999999964 33210 0111
Q ss_pred ccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH------------------hhccccchhhHHHHHccHHHHHHHhh
Q 044027 423 YFESPETTADNDSPAPAVTLHVAWLIVSLLCKLDAK------------------AKHYKDAHLAYLFLANNLQHVVAKVR 484 (638)
Q Consensus 423 ~~~s~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~K------------------Sk~y~d~aL~~iFLlNN~~yI~~~v~ 484 (638)
+|..+.....+.++.++|++||.++|++|+.|||+| |+.|+|++++ +|||||+|||+++|+
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~FllNN~~yI~~~v~ 429 (564)
T 2b1e_A 351 EYTLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-FFILMNLTLVEQIVE 429 (564)
T ss_dssp GSCCCC----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-HHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhcCHHHHH-HHHHHhHHHHHHHHh
Confidence 211111000112245789999999999999999999 4679999996 599999999999999
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHhcHHhhhccCCCCC----C--CCCChhhHHhHHHHHHHHHHHHHHhccccc
Q 044027 485 TSYLQFLLGEEWINKNEAKLKQFVASYVRVAWGPVLKSLPENP----T--AVITPGQAKDYFKSFNSTFEHVYKQHSRCV 558 (638)
Q Consensus 485 ~SeL~~lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~----~--~~~~r~~iKekfk~FN~~FEe~~~~Q~~w~ 558 (638)
+|+|..+||++|.++|++++++|+ .|++++|++|++||.+++ + ++++|+.+||||++||++|||+|++|+.|+
T Consensus 430 ~SeL~~lLg~~~~~~~~~~~~~~~-~y~~~sW~~v~~~L~~~~~~~~~~ks~~~k~~iKe~fk~FN~~Fee~~~~q~~w~ 508 (564)
T 2b1e_A 430 KSELNLMLAGEGHSRLERLKKRYI-SYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYK 508 (564)
T ss_dssp TSTHHHHTTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhHhHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999995 899999999999997753 1 357899999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccCHHHHHHHHHhhh
Q 044027 559 VPYAKLREEIKETIARKLLAAYGRFYETHKVTVGERNVMLFVRFTPEDVDNYLSDLF 615 (638)
Q Consensus 559 VpD~~LR~~Lr~~i~~~VlPaY~~F~~ry~~~~~~kn~~KyiKYtpe~le~~L~~LF 615 (638)
||||+||++||++|+++|+|+|++||+||+. |+|||+|||||||+|||++|++|+
T Consensus 509 vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~--~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 509 LSDPSLKVTLKSEIISLVMPMYERFYSRYKD--SFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG--GSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCCCcccCCHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 889999999999999999999996
No 3
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.88 E-value=88 Score=30.40 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHhcCCCccChhhhhccchHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 044027 186 MADLKSIADCMINAGYTKECIKVYKVIRKSIIDEGIYRLGVERVTSSQINKMDWQVIDLKIKNWLEAVKIAMKTLFTGER 265 (638)
Q Consensus 186 i~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~e~~~~~~v~k~~~e~~e~~i~~wi~al~~~v~~L~~~E~ 265 (638)
...++....+|+.-|.....+..|-+.|+..+...+..++.+ +....|+..+...+-..+..=.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~----------------gd~~~Yi~~Ls~i~Fs~I~~t~ 154 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSV----------------DNPTNYLTQLAVIRFQTIKKTV 154 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--C----------------CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhccc----------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999999999887432 1245667666544433333222
Q ss_pred HHHHhhcCCCchhhhhHHHHHHHHHHHHHhhhHHHH
Q 044027 266 ILCDHVFASSESIRESCFTDISKEGAAILFAFPELV 301 (638)
Q Consensus 266 ~L~~~vf~~~~~~~~~~F~~i~~~~~~~ll~f~~~v 301 (638)
.--..+|+..+ ..|+..++.=+...+-.|+..+
T Consensus 155 ~~f~~~F~~~~---~~~~S~lV~Wa~~eve~f~~l~ 187 (235)
T 2d2s_A 155 EDFQDIFKELG---AKISSILVDWCSDEVDNHFKLI 187 (235)
T ss_dssp HHHHHHSTTCC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC---cccccHHHHHHHHHHHHHHHHH
Confidence 23345777632 1344444444444444555444
No 4
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}
Probab=39.85 E-value=1.1e+02 Score=32.14 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=45.6
Q ss_pred HHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHhcHHhhhccCCCCCCCCCChhhHHhHHHHHHHHHHHHHHhc
Q 044027 477 QHVVAKVRTSYLQFLLGEEWINKNEAKLKQFVASYVRVAWGPVLKSLPENPTAVITPGQAKDYFKSFNSTFEHVYKQH 554 (638)
Q Consensus 477 ~yI~~~v~~SeL~~lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~~~~~r~~iKekfk~FN~~FEe~~~~Q 554 (638)
..|...|.. +..-++++.+.-|...+++|.+-|++ .+.+++-|.+-.+.+++-..||=..+.|-.+|+++....
T Consensus 179 aeLw~~Isd--~I~nIksdYldvYa~IvK~YTdyyQd--fNeaLSklSdyIsAGkDGNkIkFd~~sfk~al~kl~~KY 252 (407)
T 2p7n_A 179 SDLWDMISD--QIGKIKDNYLGVYENVVGQYTDFYKA--FSDILSQMANWIKPGGDGNKVKLNVDALKAALEKLKKDF 252 (407)
T ss_dssp HHHHHHHHH--HHHHHHHHTHHHHHHHHHHHHHHHHH--HHHHHHHHGGGCC---------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhccCCCCCeeeecHHHHHHHHHHHHHhh
Confidence 344444433 33345678889999999999987764 788888875544444555556666677777888877666
No 5
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=27.92 E-value=38 Score=31.07 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccCHHHHHHHHHhh
Q 044027 543 FNSTFEHVYKQHSRCVVPYAKLREEIKETIARKLLAAYGRFYETHKVTVGERNVMLFVRFTPEDVDNYLSDL 614 (638)
Q Consensus 543 FN~~FEe~~~~Q~~w~VpD~~LR~~Lr~~i~~~VlPaY~~F~~ry~~~~~~kn~~KyiKYtpe~le~~L~~L 614 (638)
|---.-++..+|++|. .|.|+|.+|+++|.. |+...+-++++|+++|..+
T Consensus 32 ~~vLVs~ILsqQT~~~----------------~v~~~~~~l~~~~pt------~~~la~a~~~el~~~i~~l 81 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGK----------------MAIPVLWKFLEKYPS------AEVARTADWRDVSELLKPL 81 (161)
T ss_dssp HHHHHHHHHTTTSCHH----------------HHHHHHHHHHHHSCS------HHHHTTSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHhhCcHH----------------HHHHHHHHHHHHCCC------HHHHhccChHhHHhHhhhc
Confidence 3444556777777765 589999999999865 6778889999999999876
No 6
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=26.63 E-value=15 Score=29.75 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=10.0
Q ss_pred HHHHHHhhcccCCCCCcccccccCH
Q 044027 580 YGRFYETHKVTVGERNVMLFVRFTP 604 (638)
Q Consensus 580 Y~~F~~ry~~~~~~kn~~KyiKYtp 604 (638)
-..|++||.+. -+||+|+||
T Consensus 77 Ia~FLeKYS~~-----LnkYVkF~~ 96 (97)
T 2x5h_A 77 IAEFLEKYSDF-----LNEYVKFTP 96 (97)
T ss_dssp HHHHHHHTHHH-----HHHHC----
T ss_pred HHHHHHHHHHH-----HHHhhcccc
Confidence 34677777664 347888876
No 7
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=21.92 E-value=53 Score=32.90 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcHHhhhccCCCCCCCCCChhhHHhHHHHHHHHHHHHHHhccccccCChHHHHHHHHHH
Q 044027 493 GEEWINKNEAKLKQFVASYVRVAWGPVLKSLPENPTAVITPGQAKDYFKSFNSTFEHVYKQHSRCVVPYAKLREEIKETI 572 (638)
Q Consensus 493 G~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~d~~~~~~~r~~iKekfk~FN~~FEe~~~~Q~~w~VpD~~LR~~Lr~~i 572 (638)
|++.+.-|...+++|.+-|+. .+.+++.|.+-.++ ++-..||=..+.|-.+++++......+..|.++=.+..++
T Consensus 133 gkdYlDvYa~IVk~YTdyyQd--fNe~LSKlSd~IsA-kDGN~IKFD~~sfk~~l~~l~~kY~~v~~Psd~ea~~W~k-- 207 (303)
T 3nft_A 133 GKSDIDAYATIVEGLTKYFQS--VADVMSKLQDYISA-KDDKNMKIDGGKIKALIQQVIDHLPTMQLPKGADIARWRK-- 207 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHGGGGEEE-ETTTEEEECHHHHHHHHHHHHHTCCEEECCTTCCHHHHHH--
T ss_pred cHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccc-cCCCeeeecHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH--
Confidence 456777888999999977764 77888888543333 5555577778888889999998888888873222222222
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcccccccCHHHHHHHHHhh
Q 044027 573 ARKLLAAYGRFYETHKVTVGERNVMLFVRFTPEDVDNYLSDL 614 (638)
Q Consensus 573 ~~~VlPaY~~F~~ry~~~~~~kn~~KyiKYtpe~le~~L~~L 614 (638)
.+=|+ +..... . -|..++..|.+|++.|
T Consensus 208 --~Lg~~-------f~V~~s----G-~I~~Dl~~i~~m~~sL 235 (303)
T 3nft_A 208 --ELGDA-------VSISDS----G-VVTINPDKLIKMRDSL 235 (303)
T ss_dssp --HHCTT-------EEECTT----C-EEEECCHHHHHHHHTC
T ss_pred --HhCCC-------ceeCCC----c-eEEeCcHHHHHHHhcC
Confidence 22222 222111 1 4889999999999977
No 8
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory domain, heter incompatibility, prion- binding protein; 2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Probab=20.72 E-value=1.5e+02 Score=28.52 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=55.5
Q ss_pred cHHhhhccCCCCC--C---CCCChhhHHhHHHHHHHHHHHHHHhcccccc--CChHHHHHHHHHHHHHHHHHHH---HHH
Q 044027 515 AWGPVLKSLPENP--T---AVITPGQAKDYFKSFNSTFEHVYKQHSRCVV--PYAKLREEIKETIARKLLAAYG---RFY 584 (638)
Q Consensus 515 sW~~vl~~L~d~~--~---~~~~r~~iKekfk~FN~~FEe~~~~Q~~w~V--pD~~LR~~Lr~~i~~~VlPaY~---~F~ 584 (638)
.||..+....+.. . .....+.++.-+..--.-|++.-+.+..|.+ ||.++-..=-..+...+-+.|. +|.
T Consensus 58 ~WG~avGL~~~~~~~~~l~~~~~~~~v~~iL~~I~~lf~~~~~l~~Ry~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~ 137 (225)
T 2wvq_A 58 RWGEAVKINDDPRFHSDAPTDKSVQLAKSIVEEILLLFESAQKTSKRYELVADQQDLVVFEDKDMKPIGRALHRRLNDLV 137 (225)
T ss_dssp HHHHHTTTTTCGGGGCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGGCBCCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccChhhHHHHHHHHHHHHHHHH
Confidence 5999998775432 1 1122456777777777777777777766665 3322210001111123333343 334
Q ss_pred HhhcccCCCCCcccccccCHHHHHHHHHhh
Q 044027 585 ETHKVTVGERNVMLFVRFTPEDVDNYLSDL 614 (638)
Q Consensus 585 ~ry~~~~~~kn~~KyiKYtpe~le~~L~~L 614 (638)
.+-+........-+.+-|+.+.++.+|.++
T Consensus 138 ~~rq~~~s~~~r~~Wai~Dk~~F~~LV~~i 167 (225)
T 2wvq_A 138 SRRQKQTSLAKKTAWALYDGKSLEKIVDQV 167 (225)
T ss_dssp HHHSCCCCSCCCCCEEECSHHHHHHHHHHH
T ss_pred HhccccCCccceeeeeeechHHHHHHHHHH
Confidence 333333233445678889999988887664
No 9
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=19.08 E-value=37 Score=36.89 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=43.2
Q ss_pred hhHHhHHHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCCcccccccCHHHHHHHH
Q 044027 534 GQAKDYFKSFNSTFEHVYKQHSRCVVPYAKLREEIKETIARKLLAAYGRFYETHKVT--VGERNVMLFVRFTPEDVDNYL 611 (638)
Q Consensus 534 ~~iKekfk~FN~~FEe~~~~Q~~w~VpD~~LR~~Lr~~i~~~VlPaY~~F~~ry~~~--~~~kn~~KyiKYtpe~le~~L 611 (638)
..+..+.+.|++.|+++.+.= ++....+..-.|+.+|..+... ++...-..|+.=+..+|+++|
T Consensus 75 ~~l~~~~~~F~e~F~~LL~~S--------------e~~l~~mF~~tYg~ly~qn~~~f~~LF~~L~~Yy~g~~v~Lee~v 140 (506)
T 3odn_A 75 GILGSKATKFKDIFTALLKES--------------RTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDLLEVM 140 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTHHHHHTHHHHHHHHHHHHHHHHHSCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 346677888999999887532 2334455566677766665544 333334445444556788888
Q ss_pred HhhhC
Q 044027 612 SDLFF 616 (638)
Q Consensus 612 ~~LFe 616 (638)
+++|.
T Consensus 141 ~~Ff~ 145 (506)
T 3odn_A 141 DKFFN 145 (506)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88775
No 10
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=17.55 E-value=76 Score=19.40 Aligned_cols=16 Identities=31% Similarity=0.712 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 044027 539 YFKSFNSTFEHVYKQH 554 (638)
Q Consensus 539 kfk~FN~~FEe~~~~Q 554 (638)
||++|-..|..+++.-
T Consensus 2 rfkrfrkkfkklfkkl 17 (27)
T 2ket_A 2 RFKRFRKKFKKLFKKL 17 (27)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc
Confidence 6888888888888754
Done!