BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044030
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------HKK 110
IL+ ++ K G ++I+G SGSGK+TLL L G L + T GK+ + G ++K
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTE--GKVFLEGKEVDYTNEK 74
Query: 111 ALAYGTS---AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
L+ + +V Q LI LT E V L PK + KER E + E+GL
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVP---MLKMGKPKKEAKERGEYLLSELGLG 131
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
D ++ + LSGG+++RV+I+ + P LLF DEPT LDSA + VM K+ +
Sbjct: 132 DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-- 189
Query: 228 IGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259
G +I+ H+ E+ +L H + G+ V
Sbjct: 190 -GTSIVMVTHE--RELAELTHRTLEMKDGKVV 218
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 15/184 (8%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----- 108
G + ++DL+ K G L ++GPSG GKTT L +AG L TR G+I I +
Sbjct: 17 GDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG-LEEPTR--GQIYIEDNLVADP 73
Query: 109 KKALAYGTS----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
+K + A V Q L TV + + + +L+ +PK + +R +
Sbjct: 74 EKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXL 130
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
GL + +N + R LSGGQ++RV++ I+ RPK+ DEP S LD+ + + KL +
Sbjct: 131 GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 225 RDGI 228
+ G+
Sbjct: 191 QLGV 194
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 15/218 (6%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
KKG L+++ + G I+GPSG+GKTT + +AG D TG++ + +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL---DVPSTGELYFD--DRL 68
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYS----AQLQLPDT---MPKSDKKERAEVTIREM 164
+A V +D I + A+Y + + P T M K + ++R E + +
Sbjct: 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL 128
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
+ +N R LSGGQ++RV+++ ++ P LL LDEP S LD+ + + ++
Sbjct: 129 DIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
R +G T++ H P +++F + + +L G+ V G
Sbjct: 189 R--LGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVG 223
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 15/218 (6%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
KKG L+++ + G I+GPSG+GKTT + +AG D TG++ + +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL---DVPSTGELYFD--DRL 68
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYS----AQLQLPDT---MPKSDKKERAEVTIREM 164
+A V +D I + A+Y + + P T M K + ++R E + +
Sbjct: 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL 128
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
+ +N R LSG Q++RV+++ ++ P LL LDEP S LD+ + + ++
Sbjct: 129 DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
R +G T++ H P +++F + + +L G+ V G
Sbjct: 189 R--LGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVG 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 26/240 (10%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR---QTGKILINGHKK 110
G + + +++ K G + ++GPSG GKTT L +AG L +R G L+ +K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEK 72
Query: 111 ALAYGTS----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166
+ A V Q L +TV + + + +L+ +P+ + +R +GL
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL 129
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
+ +N + R LSGGQ++RV++ I+ +P++ +DEP S LD+ + + + KL ++
Sbjct: 130 TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189
Query: 227 GIGRTIIASIHQPSSEVFQLFHNLCLLSAG--------QTVYFGPATAANEFFA-FNGFP 277
G+ T I H E + + +++ G VY P AN F A F G P
Sbjct: 190 GV--TTIYVTHD-QVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP---ANTFVAGFIGSP 243
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 15/189 (7%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-------- 110
L+++ K G ++IMGPSGSGK+T+L+ + G L T G++ I+ K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE--GEVYIDNIKTNDLDDDEL 77
Query: 111 -ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
+ +V Q LI LT E V + M ++++RA ++ L++
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137
Query: 170 M-NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
N + +LSGGQ++RV+I+ + P ++ D+PT LDS +M + KL + D
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED-- 195
Query: 229 GRTIIASIH 237
G+T++ H
Sbjct: 196 GKTVVVVTH 204
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 15/189 (7%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-------- 110
L+++ K G ++IMGPSGSGK+T+L+ + G L T G++ I+ K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE--GEVYIDNIKTNDLDDDEL 77
Query: 111 -ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
+ +V Q LI LT E V + M ++++RA ++ L++
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137
Query: 170 M-NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
N + +LSGGQ++RV+I+ + P ++ D+PT LDS +M + KL + D
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED-- 195
Query: 229 GRTIIASIH 237
G+T++ H
Sbjct: 196 GKTVVVVTH 204
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 32/298 (10%)
Query: 48 VSNGKK--GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT--GKI 103
V N KK G ++ ++ K G +A++GPSG GKTT L LAG + + +
Sbjct: 6 VVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDV 65
Query: 104 LINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIRE 163
L+N Y V Q+ L +TV E + + + + + K + ++R R+
Sbjct: 66 LVNDIPPK--YREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARK 120
Query: 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
+ + + ++ + +LSGGQ++RV+++ ++ +PK+L DEP S LD+ + + I L
Sbjct: 121 LLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ 180
Query: 224 QRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF--AFNGFPCPTH 281
Q GI T + H +E + + + + G+ V +G +E + N F
Sbjct: 181 QELGI--TSVYVTHD-QAEAMTMASRIAVFNQGKLVQYG---TPDEVYDSPKNMFVASFI 234
Query: 282 QNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEIC 339
NP +FL+ D + E ILKR + E V ++ E+
Sbjct: 235 GNPPTNFLR---------------DFSVSVENKQTILKRDDVIIKLPEPVDVKLKEVV 277
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING----HKKALA 113
+L+D+T + KPG +A++GP+GSGKTT+++ L D G+IL++G K +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSS 426
Query: 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GLQDAMN 171
+S + DT++ + TVKE + Y + + ++ K ++ I+ + G + +
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLT 486
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
LS GQ++ ++I+ L PK+L LDE TS +D+ + + + KL + G+T
Sbjct: 487 DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME----GKT 542
Query: 232 IIASIHQ 238
I H+
Sbjct: 543 SIIIAHR 549
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 27/240 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK--- 110
G + +D+ G + +GPSG GK+TLL +AG +T +G + I G K+
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG---LETITSGDLFI-GEKRMND 69
Query: 111 -ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
A V Q L L+V E + + +L K +R + L
Sbjct: 70 TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHL 126
Query: 170 MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
++ + + LSGGQ++RV+I ++ P + LDEP S LD+A + I++L +R +G
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LG 184
Query: 230 RTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFL 289
RT+I H E L + +L AG+ G P + P+D F+
Sbjct: 185 RTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGK-------------PLELYHYPADRFV 230
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 27/240 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK--- 110
G + +D+ G + +GPSG GK+TLL +AG +T +G + I G K+
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG---LETITSGDLFI-GEKRMND 69
Query: 111 -ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
A V Q L L+V E + + +L K +R + L
Sbjct: 70 TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHL 126
Query: 170 MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
++ + + LSGGQ++RV+I ++ P + LDEP S LD+A + I++L +R +G
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LG 184
Query: 230 RTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFL 289
RT+I H E L + +L AG+ G P + P+D F+
Sbjct: 185 RTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGK-------------PLELYHYPADRFV 230
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 20/218 (9%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG-------RLGSDTRQTGKIL 104
K G+ + L ++ K G +A++GPSGSGK+TLL +AG ++ D + ++
Sbjct: 12 KFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP 71
Query: 105 INGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
L + Q+ L +TV + + + +L+ P+ + ++ + +
Sbjct: 72 PKDRNVGLVF-------QNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKML 121
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
+ +N +LSGGQ++RV+I+ ++ P++L LDEP S LD+ V + + +L +
Sbjct: 122 HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
GI T + H +E + + ++ G+ + G
Sbjct: 182 ELGI--TTVYVTHD-QAEALAMADRIAVIREGEILQVG 216
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 12/167 (7%)
Query: 45 VTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL 104
+ I S +K + L++L+ + G I+GP+G+GKT L+ +AG D+ G+IL
Sbjct: 2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRIL 58
Query: 105 INGHKK---ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTI 161
++G + A+V Q+ +L + VK+ + + + M K +R T
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMR------MKKIKDPKRVLDTA 112
Query: 162 REMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
R++ ++ ++ LSGG+++RV+++ ++T PK+L LDEP S LD
Sbjct: 113 RDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 29/196 (14%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTT---LLDALAGRLGSDTRQTGKILINGHK-KAL- 112
IL+ L+ +PG LA++GPSG GK+T LL+ LG G+I I+G + K L
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG------GEIFIDGSEIKTLN 1147
Query: 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT-----IREM 164
A V+Q+ TL ++ E + Y P ++ + +E A + I E+
Sbjct: 1148 PEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIAEL 1203
Query: 165 --GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
G + + R +LSGGQK+R++I+ ++ PK+L LDE TS LD+ + V + +
Sbjct: 1204 PEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA 1263
Query: 223 GQRDGIGRTIIASIHQ 238
+ GRT I H+
Sbjct: 1264 RE----GRTCIVIAHR 1275
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 19/193 (9%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLL-------DALAGRLGSDTRQTGKILINGHKK 110
IL + G +A++G SG GK+T++ D L G++ D I + +K
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GLQD 168
+A V+Q+ L T++E + + + M + K AE I+ + G
Sbjct: 493 NVAV-----VSQEPALFNC-TIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNT 546
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+ R +LSGGQK+R++I+ ++ PK+L LDE TS LD+ + V + K +
Sbjct: 547 LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK---- 602
Query: 229 GRTIIASIHQPSS 241
GRT I H+ S+
Sbjct: 603 GRTTIIIAHRLST 615
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 32/201 (15%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLL-------DALAGRL---GSDTRQTGKILING 107
I +D + G + A++GPSGSGK+T+L D +G + G D RQ + +
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 108 HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT-----IR 162
GT V+Q+ L + ++ E + Y A P ++ + + AEV IR
Sbjct: 419 K-----IGT---VSQEPILFSC-SIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIR 467
Query: 163 EM--GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
G + + LSGGQK+R++I+ +L PK+L LDE TS LD+ Y V +
Sbjct: 468 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 527
Query: 221 KLGQRDGIGRTIIASIHQPSS 241
+L GRT++ H+ S+
Sbjct: 528 RLMD----GRTVLVIAHRLST 544
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 27/240 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK--- 110
G + +D+ G + +GPSG GK+TLL +AG +T +G + I G K+
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG---LETITSGDLFI-GEKRMND 69
Query: 111 -ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
A V Q L L+V E + + +L K +R + L
Sbjct: 70 TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHL 126
Query: 170 MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
++ + + LSGGQ++RV+I ++ P + LD+P S LD+A + I++L +R +G
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKR--LG 184
Query: 230 RTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFL 289
RT+I H E L + +L AG+ G P + P+D F+
Sbjct: 185 RTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGK-------------PLELYHYPADRFV 230
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK---ALAYGTSAYVTQD 123
+ G ++ ++GPSGSGKTT+L +AG L T+ G + I G + V Q+
Sbjct: 39 REGEMVGLLGPSGSGKTTILRLIAG-LERPTK--GDVWIGGKRVTDLPPQKRNVGLVFQN 95
Query: 124 DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183
L +TV + V + + + +PK + R +R M L+ N LSGGQ++
Sbjct: 96 YALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQ 152
Query: 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV 243
RV+++ + RP++L DEP + +D+ + + + ++ D +G T + H E
Sbjct: 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV--HDEMGVTSVFVTHD-QEEA 209
Query: 244 FQLFHNLCLLSAGQTVYFG 262
++ + +L G FG
Sbjct: 210 LEVADRVLVLHEGNVEQFG 228
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 33/206 (16%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
K S IL+++ K G ++ I+G SGSGK+TL L R + G++LI+GH A
Sbjct: 14 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLA 70
Query: 112 LA-----YGTSAYVTQDDTLITTLTVK-----------EAVYYSAQLQLPDTMPKSDKKE 155
LA V QD+ L+ + E V Y+A+L S+ +E
Sbjct: 71 LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFI-SELRE 129
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
+ E G LSGGQ++R++I+ ++ PK+L DE TS LD + + +
Sbjct: 130 GYNTIVGEQGAG---------LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 216 MSRIAKLGQRDGIGRTIIASIHQPSS 241
M + K+ + GRT+I H+ S+
Sbjct: 181 MRNMHKICK----GRTVIIIAHRLST 202
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 33/206 (16%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
K S IL+++ K G ++ I+G SGSGK+TL L R + G++LI+GH A
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLA 68
Query: 112 LA-----YGTSAYVTQDDTLITTLTVK-----------EAVYYSAQLQLPDTMPKSDKKE 155
LA V QD+ L+ + E V Y+A+L S+ +E
Sbjct: 69 LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFI-SELRE 127
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
+ E G LSGGQ++R++I+ ++ PK+L DE TS LD + + +
Sbjct: 128 GYNTIVGEQGAG---------LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 216 MSRIAKLGQRDGIGRTIIASIHQPSS 241
M + K+ + GRT+I H+ S+
Sbjct: 179 MRNMHKICK----GRTVIIIAHRLST 200
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 33/206 (16%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
K S IL+++ K G ++ I+G SGSGK+TL L R + G++LI+GH A
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLA 74
Query: 112 LA-----YGTSAYVTQDDTLITTLTVK-----------EAVYYSAQLQLPDTMPKSDKKE 155
LA V QD+ L+ + E V Y+A+L S+ +E
Sbjct: 75 LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFI-SELRE 133
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
+ E G LSGGQ++R++I+ ++ PK+L DE TS LD + + +
Sbjct: 134 GYNTIVGEQGAG---------LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 216 MSRIAKLGQRDGIGRTIIASIHQPSS 241
M + K+ + GRT+I H+ S+
Sbjct: 185 MRNMHKICK----GRTVIIIAHRLST 206
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 32/201 (15%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLL-------DALAGRL---GSDTRQTGKILING 107
I +D + G + A++GPSGSGK+T+L D +G + G D RQ + +
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 108 HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT-----IR 162
GT V+Q+ L + ++ E + Y A P ++ + + AEV IR
Sbjct: 450 K-----IGT---VSQEPILFSC-SIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIR 498
Query: 163 EM--GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
G + + LSGGQK+R++I+ +L PK+L LDE TS LD+ Y V +
Sbjct: 499 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 558
Query: 221 KLGQRDGIGRTIIASIHQPSS 241
+L GRT++ H S+
Sbjct: 559 RLMD----GRTVLVIAHHLST 575
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G+ + + L K G L ++GPSG GKTT L +AG + G+I + +
Sbjct: 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG---LEEPTEGRIYFG--DRDVT 76
Query: 114 Y-----GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD 168
Y + V Q + +TV E + + +++ PK + +R + +++
Sbjct: 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEE 133
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+N +LSGGQ++RV+++ I+ P +L +DEP S LD+ + + I KL Q+ +
Sbjct: 134 LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--L 191
Query: 229 GRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265
T I H E + + +++ GQ + G T
Sbjct: 192 KVTTIYVTHD-QVEAMTMGDRIAVMNRGQLLQIGSPT 227
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G+ + + L K G L ++GPSG GKTT L +AG + G+I + +
Sbjct: 23 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG---LEEPTEGRIYFG--DRDVT 77
Query: 114 Y-----GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD 168
Y + V Q + +TV E + + +++ PK + +R + +++
Sbjct: 78 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEE 134
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+N +LSGGQ++RV+++ I+ P +L +DEP S LD+ + + I KL Q+ +
Sbjct: 135 LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--L 192
Query: 229 GRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265
T I H E + + +++ GQ + G T
Sbjct: 193 KVTTIYVTHD-QVEAMTMGDRIAVMNRGQLLQIGSPT 228
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 33/206 (16%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
K S IL+++ K G ++ I+G +GSGK+TL L R + G++LI+GH A
Sbjct: 14 KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLA 70
Query: 112 LA-----YGTSAYVTQDDTLITTLTVK-----------EAVYYSAQLQLPDTMPKSDKKE 155
LA V QD+ L+ + E V Y+A+L S+ +E
Sbjct: 71 LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFI-SELRE 129
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
+ E G LSGGQ++R++I+ ++ PK+L DE TS LD + + +
Sbjct: 130 GYNTIVGEQGAG---------LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 216 MSRIAKLGQRDGIGRTIIASIHQPSS 241
M + K+ + GRT+I H+ S+
Sbjct: 181 MRNMHKICK----GRTVIIIAHRLST 202
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 33/206 (16%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
K S IL+++ K G ++ I+G SGSGK+TL L R + G++LI+GH A
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLA 74
Query: 112 LA-----YGTSAYVTQDDTLITTLTVK-----------EAVYYSAQLQLPDTMPKSDKKE 155
LA V QD+ L+ + E V Y+A+L S+ +E
Sbjct: 75 LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFI-SELRE 133
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
+ E G LSGGQ++R++I+ ++ PK+L D+ TS LD + + +
Sbjct: 134 GYNTIVGEQGAG---------LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 216 MSRIAKLGQRDGIGRTIIASIHQPSS 241
M + K+ + GRT+I H+ S+
Sbjct: 185 MRNMHKICK----GRTVIIIAHRLST 206
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 13/184 (7%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA--LAYG 115
+L+D+ + G + ++G +GSGKTTLL LAG L + G+I ++G L
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA----AGEIFLDGSPADPFLLRK 81
Query: 116 TSAYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI 174
YV Q+ + I TV+E V +S ++ + +S+ ++R + + +GL
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIM---GLDESEMRKRIKKVLELVGLSGLAAADP 138
Query: 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIA 234
LSGGQK+R++I+ + + L LDEP S LD + + + L G+ II
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE---GKGIIL 195
Query: 235 SIHQ 238
H+
Sbjct: 196 VTHE 199
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 28/218 (12%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS--------- 117
K G + AI+G +G GK+TL G L +G+IL + K + Y
Sbjct: 32 KRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDN--KPIDYSRKGIMKLRESI 86
Query: 118 --AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR 175
+ D+ L + ++ + + ++LP+ + ++R + ++ G++ +
Sbjct: 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPE----DEIRKRVDNALKRTGIEHLKDKPTH 142
Query: 176 RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIAS 235
LS GQK+RV+I+ ++ PK+L LDEPT+GLD +M + ++ + GI TII +
Sbjct: 143 CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI--TIIIA 200
Query: 236 IHQPSSEVFQLF-HNLCLLSAGQTVYFGPATAANEFFA 272
H ++ L+ N+ ++ G+ + G E FA
Sbjct: 201 TH--DIDIVPLYCDNVFVMKEGRVILQG---NPKEVFA 233
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 18/196 (9%)
Query: 53 KGSSSI--LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110
+G+ +I L +++ + G + ++G SG+GK+TL+ + L T G +L++G +
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPTE--GSVLVDGQEL 69
Query: 111 AL--------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIR 162
A + Q L+++ TV V +L D PK + K R +
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLS 126
Query: 163 EMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
+GL D ++ LSGGQK+RV+I+ + + PK+L DE TS LD A + ++ + +
Sbjct: 127 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186
Query: 223 GQRDGIGRTIIASIHQ 238
+R +G TI+ H+
Sbjct: 187 NRR--LGLTILLITHE 200
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 15/192 (7%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-HKKAL 112
GS +L+ + + + G ++ ++GPSGSGK+T L L L D + G+I+I+G + KA
Sbjct: 14 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDE-GEIIIDGINLKAK 70
Query: 113 AYGTS------AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166
+ V Q L +TV + A +++ P+ + +A + ++GL
Sbjct: 71 DTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKV-RKWPREKAEAKAMELLDKVGL 128
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
+D + LSGGQ +RV+I+ + PK++ DEPTS LD V+S + +L
Sbjct: 129 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE- 187
Query: 227 GIGRTIIASIHQ 238
G T++ H+
Sbjct: 188 --GMTMVVVTHE 197
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 22/219 (10%)
Query: 30 VNEDDGVFLTWKDLTVTIVSNGKKGSSSI--LEDLTGYAKPGHLLAIMGPSGSGKTTLLD 87
+++DD + ++T +G+ +I L +++ + G + ++G SG+GK+TL+
Sbjct: 17 IDDDDKHMIKLSNITKVF----HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIR 72
Query: 88 ALAGRLGSDTRQTGKILINGHKKAL--------AYGTSAYVTQDDTLITTLTVKEAVYYS 139
+ L T G +L++G + A + Q L+++ TV V
Sbjct: 73 CV-NLLERPTE--GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 129
Query: 140 AQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLF 199
+L D PK + K R + +GL D ++ LSGGQK+RV+I+ + + PK+L
Sbjct: 130 LEL---DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 186
Query: 200 LDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
D+ TS LD A + ++ + + +R +G TI+ H+
Sbjct: 187 CDQATSALDPATTRSILELLKDINRR--LGLTILLITHE 223
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 33/198 (16%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
K S IL+++ K G ++ I+G SGSGK+TL L R + G++LI+GH A
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLA 68
Query: 112 LA-----YGTSAYVTQDDTLITTLTVK-----------EAVYYSAQLQLPDTMPKSDKKE 155
LA V QD+ L+ + E V Y+A+L S+ +E
Sbjct: 69 LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFI-SELRE 127
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
+ E G LSGGQ++R++I+ ++ PK+L DE TS LD + + +
Sbjct: 128 GYNTIVGEQGAG---------LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 216 MSRIAKLGQRDGIGRTII 233
M + K+ + GRT+I
Sbjct: 179 MRNMHKICK----GRTVI 192
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 33/198 (16%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
K S IL+++ K G ++ I+G SGSGK+TL L R + G++LI+GH A
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLA 74
Query: 112 LA-----YGTSAYVTQDDTLITTLTVK-----------EAVYYSAQLQLPDTMPKSDKKE 155
LA V QD+ L+ + E V Y+A+L S+ +E
Sbjct: 75 LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFI-SELRE 133
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
+ E G LSGGQ++R++I+ ++ PK+L DE TS LD + + +
Sbjct: 134 GYNTIVGEQGAG---------LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 216 MSRIAKLGQRDGIGRTII 233
M + K+ + GRT+I
Sbjct: 185 MRNMHKICK----GRTVI 198
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 15/192 (7%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-HKKAL 112
GS +L+ + + + G ++ ++GPSGSGK+T L L L D + G+I+I+G + KA
Sbjct: 35 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDE-GEIIIDGINLKAK 91
Query: 113 AYGTS------AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166
+ V Q L +TV + A +++ P+ + +A + ++GL
Sbjct: 92 DTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKV-RKWPREKAEAKAMELLDKVGL 149
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
+D + LSGGQ +RV+I+ + PK++ DEPTS LD V+S + +L
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE- 208
Query: 227 GIGRTIIASIHQ 238
G T++ H+
Sbjct: 209 --GMTMVVVTHE 218
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 15/181 (8%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK---------ALAYGTS 117
K G ++I GPSGSGK+T L+ + G L T G++ I+ K +
Sbjct: 29 KEGEFVSIXGPSGSGKSTXLNII-GCLDKPTE--GEVYIDNIKTNDLDDDELTKIRRDKI 85
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-NTRIRR 176
+V Q LI LT E V + ++++RA ++ L++ N + +
Sbjct: 86 GFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPNQ 145
Query: 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASI 236
LSGGQ++RV+I+ + P ++ DEPT LDS + + KL + D G+T++
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEED--GKTVVVVT 203
Query: 237 H 237
H
Sbjct: 204 H 204
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 22/219 (10%)
Query: 30 VNEDDGVFLTWKDLTVTIVSNGKKGSSSI--LEDLTGYAKPGHLLAIMGPSGSGKTTLLD 87
+++DD + ++T +G+ +I L +++ + G + ++G SG+GK+TL+
Sbjct: 17 IDDDDKHXIKLSNITKVF----HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIR 72
Query: 88 ALAGRLGSDTRQTGKILINGHKKAL--------AYGTSAYVTQDDTLITTLTVKEAVYYS 139
+ L T G +L++G + A + Q L+++ TV V
Sbjct: 73 CV-NLLERPTE--GSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALP 129
Query: 140 AQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLF 199
+L D PK + K R + +GL D ++ LSGGQK+RV+I+ + + PK+L
Sbjct: 130 LEL---DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 186
Query: 200 LDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
D+ TS LD A + ++ + + +R +G TI+ H+
Sbjct: 187 CDQATSALDPATTRSILELLKDINRR--LGLTILLITHE 223
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 16/195 (8%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128
G +LA++G +G GK+TLLD L LG GKI + Y + +V Q +
Sbjct: 31 GDILAVLGQNGCGKSTLLDLL---LGIHRPIQGKIEV--------YQSIGFVPQFFSSPF 79
Query: 129 TLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187
+V + V + PKS + A + + L LSGGQ++ + I
Sbjct: 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILI 139
Query: 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLF 247
+ I + KL+ LDEPTS LD A V+S + L Q + T++ + HQP+ V
Sbjct: 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM--TVVFTTHQPNQVV--AI 195
Query: 248 HNLCLLSAGQTVYFG 262
N LL Q FG
Sbjct: 196 ANKTLLLNKQNFKFG 210
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTT-------LLDALAGRLGSDTRQTGKILINGHKK 110
IL+ L K G +A++G SG GK+T L D L G + D + I + ++
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ--D 168
+ V+Q+ L T T+ E + Y + D + K+ K+ A I ++ Q
Sbjct: 465 IIGV-----VSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDT 518
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+ R +LSGGQK+R++I+ ++ PK+L LDE TS LD+ + V + + K +
Sbjct: 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE---- 574
Query: 229 GRTIIASIHQPSS 241
GRT I H+ S+
Sbjct: 575 GRTTIVIAHRLST 587
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 21/198 (10%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLL-------DALAGRLGSDTRQTGKILING 107
S +L+ L+ K G LA++G SG GK+T++ D +AG + D ++ ++ +
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQW 1104
Query: 108 HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
+ L + + ++ ++ E + Y ++ + A + L
Sbjct: 1105 LRAQLG------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLP 1158
Query: 168 DAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
D NTR+ +LSGGQK+R++I+ ++ +P +L LDE TS LD+ + V + K
Sbjct: 1159 DKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR 1218
Query: 224 QRDGIGRTIIASIHQPSS 241
+ GRT I H+ S+
Sbjct: 1219 E----GRTCIVIAHRLST 1232
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTT-------LLDALAGRLGSDTRQTGKILINGHKK 110
IL+ L K G +A++G SG GK+T L D L G + D + I + ++
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ--D 168
+ V+Q+ L T T+ E + Y + D + K+ K+ A I ++ Q
Sbjct: 465 IIGV-----VSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDT 518
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+ R +LSGGQK+R++I+ ++ PK+L LDE TS LD+ + V + + K +
Sbjct: 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE---- 574
Query: 229 GRTIIASIHQPSS 241
GRT I H+ S+
Sbjct: 575 GRTTIVIAHRLST 587
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 21/198 (10%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLL-------DALAGRLGSDTRQTGKILING 107
S +L+ L+ K G LA++G SG GK+T++ D +AG + D ++ ++ +
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQW 1104
Query: 108 HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
+ L + + ++ ++ E + Y ++ + A + L
Sbjct: 1105 LRAQLG------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLP 1158
Query: 168 DAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
D NTR+ +LSGGQK+R++I+ ++ +P +L LDE TS LD+ + V + K
Sbjct: 1159 DKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR 1218
Query: 224 QRDGIGRTIIASIHQPSS 241
+ GRT I H+ S+
Sbjct: 1219 E----GRTCIVIAHRLST 1232
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 47 IVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN 106
I G LE+++ G L + G +GSGK+TLL +AG + +G +L +
Sbjct: 11 IFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYD 67
Query: 107 GHKKALAYGTS-----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTI 161
G +K Y A+ +D E V+ + + P D + +
Sbjct: 68 GERKK-GYEIRRNIGIAFQYPEDQFFA-----ERVFDEVAFAVKNFYPDRDPVPLVKKAM 121
Query: 162 REMGLQ-DAMNTRIRR-LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219
+GL D+ R+ LSGG+KRRV+I+ I+ P +L LDEP GLD ++ +
Sbjct: 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 220 AKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
K +G+T+I H + V + +L G+ V+ G
Sbjct: 182 EKWKT---LGKTVILISHDIET-VINHVDRVVVLEKGKKVFDG 220
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 47 IVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN 106
I G LE+++ G L + G +GSGK+TLL +AG + +G +L +
Sbjct: 13 IFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYD 69
Query: 107 GHKKALAYGTS-----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTI 161
G +K Y A+ +D E V+ + + P D + +
Sbjct: 70 GERKK-GYEIRRNIGIAFQYPEDQFFA-----ERVFDEVAFAVKNFYPDRDPVPLVKKAM 123
Query: 162 REMGLQ-DAMNTRIRR-LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219
+GL D+ R+ LSGG+KRRV+I+ I+ P +L LDEP GLD ++ +
Sbjct: 124 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 183
Query: 220 AKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
K +G+T+I H + V + +L G+ V+ G
Sbjct: 184 EKWKT---LGKTVILISHDIET-VINHVDRVVVLEKGKKVFDG 222
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 9/159 (5%)
Query: 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-KALAY 114
+ IL+D+ + G +A +G SG GK+TL++ L R T +G+ILI+GH K
Sbjct: 354 APILKDINLSIEKGETVAFVGMSGGGKSTLIN-LIPRFYDVT--SGQILIDGHNIKDFLT 410
Query: 115 GT---SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GLQDA 169
G+ + Q D ++ + TVKE + + + ++ K A I + G
Sbjct: 411 GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTE 470
Query: 170 MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+ R +LSGGQK+R+SI+ L P +L LDE TS LD
Sbjct: 471 VGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 28/203 (13%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL-------AGRLGSDTRQTGKILING 107
S IL D++ A+P ++A GPSG GK+T+ L AG + D + I +
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN 73
Query: 108 HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--- 164
+ + + V+QD ++ T++E + Y + D D + ++
Sbjct: 74 WRSQIGF-----VSQDSAIMAG-TIRENLTYGLEGDYTD----EDLWQVLDLAFARSFVE 123
Query: 165 GLQDAMNTRIR----RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
+ D +NT + ++SGGQ++R++I+ L PK+L LDE T+ LDS + V +
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 221 KLGQRDGIGRTIIASIHQPSSEV 243
L + GRT + H+ S+ V
Sbjct: 184 SLMK----GRTTLVIAHRLSTIV 202
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 47/224 (20%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLL-------DALAGRL---GSDTRQTGKILINGH 108
L+D++ PG LA++GPSG+GK+T+L D +G + G D Q + + H
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH 129
Query: 109 KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD 168
V DT++ T+ + + Y + + E + G+ D
Sbjct: 130 ---------IGVVPQDTVLFNDTIADNIRYGR---------VTAGNDEVEAAAQAAGIHD 171
Query: 169 AM-----------NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS 217
A+ R +LSGG+K+RV+I+ IL P ++ LDE TS LD++ + +
Sbjct: 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231
Query: 218 RIAKLGQRDGIGRTIIASIHQPSSEV----FQLFHNLCLLSAGQ 257
+AK+ RT I H+ S+ V + + C++ G+
Sbjct: 232 SLAKVCAN----RTTIVVAHRLSTVVNADQILVIKDGCIVERGR 271
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 88/163 (53%), Gaps = 11/163 (6%)
Query: 53 KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR---QTGKILINGHK 109
+ + +L + KPG L+A++G +GSGK+TL++ L RL R + ++ + K
Sbjct: 353 ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN-LIPRLIDPERGRVEVDELDVRTVK 411
Query: 110 KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
G + V Q+ L + T+KE + + + D + ++ K A++ + L +
Sbjct: 412 LKDLRGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKI--AQIHDFIISLPEG 468
Query: 170 MNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
++R+ R SGGQK+R+SI+ ++ +PK+L LD+ TS +D
Sbjct: 469 YDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 91/217 (41%), Gaps = 27/217 (12%)
Query: 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD 96
L+ KDL V++ +IL L+ PG + AIMGP+GSGK+TL LAGR D
Sbjct: 1 MLSIKDLHVSVEDK------AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--ED 52
Query: 97 TRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER 156
TG + K LA + + V E S Q L T + + R
Sbjct: 53 YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV-EIPGVSNQFFL-QTALNAVRSYR 110
Query: 157 AEVTIREMGLQDAMNTRIRRL---------------SGGQKRRVSISIEILTRPKLLFLD 201
+ T+ QD M +I L SGG+K+R I + P+L LD
Sbjct: 111 GQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD 170
Query: 202 EPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
E SGLD A V + L RDG II + +Q
Sbjct: 171 ESDSGLDIDALKVVADGVNSL--RDGKRSFIIVTHYQ 205
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 91/217 (41%), Gaps = 27/217 (12%)
Query: 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD 96
L+ KDL V++ +IL L+ PG + AIMGP+GSGK+TL LAGR D
Sbjct: 20 MLSIKDLHVSVEDK------AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--ED 71
Query: 97 TRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER 156
TG + K LA + + V E S Q L T + + R
Sbjct: 72 YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV-EIPGVSNQFFL-QTALNAVRSYR 129
Query: 157 AEVTIREMGLQDAMNTRIRRL---------------SGGQKRRVSISIEILTRPKLLFLD 201
+ T+ QD M +I L SGG+K+R I + P+L LD
Sbjct: 130 GQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD 189
Query: 202 EPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
E SGLD A V + L RDG II + +Q
Sbjct: 190 ESDSGLDIDALKVVADGVNSL--RDGKRSFIIVTHYQ 224
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 19/184 (10%)
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS---DTRQTGKILINGHKKALA 113
+++ D++ + G ++AI+GP+G+GK+TLL L G L + G+ L + KALA
Sbjct: 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALA 84
Query: 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR 173
T A + Q L +V E + Q+ D++ +V + L A+ R
Sbjct: 85 R-TRAVMRQYSELAFPFSVSEVI----QMGRAPYGGSQDRQALQQVMAQTDCL--ALAQR 137
Query: 174 -IRRLSGGQKRRVSISIEILTR-------PKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
R LSGG+++RV ++ +L + P+ LFLDEPTS LD + + + +L ++
Sbjct: 138 DYRVLSGGEQQRVQLA-RVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196
Query: 226 DGIG 229
+ +
Sbjct: 197 EPLA 200
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 16/203 (7%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK------KALAYGTSAYVTQ 122
G ++ ++G +G+GKTT L A+AG + + Q GKI+ NG + A V +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRXGIALVPE 88
Query: 123 DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK 182
+ LTV E + A + K D + + R L++ + LSGG++
Sbjct: 89 GRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPR---LKERLKQLGGTLSGGEQ 145
Query: 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242
+ ++I + +RPKLL DEP+ GL V I K+ Q T I + Q +
Sbjct: 146 QXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEG----TTILLVEQNALG 201
Query: 243 VFQLFHNLCLLSAGQTVYFGPAT 265
++ H +L GQ V G A+
Sbjct: 202 ALKVAHYGYVLETGQIVLEGKAS 224
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 79/155 (50%), Gaps = 21/155 (13%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING--------HKKALAYGTSAYVTQDD 124
++GP+G+GK+ L+ +AG + D G++ +NG ++ + + V QD
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERRGIGF-----VPQDY 79
Query: 125 TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184
L L+V + Y + + + ++ R ++G+ ++ + RLSGG+++R
Sbjct: 80 ALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQR 134
Query: 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219
V+++ ++ +P+LL LDEP S +D +M +
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 22/166 (13%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQ-DDTLI 127
G + I+GP+GSGKTTLL A++G L +G I ING + Y T +
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNYIRYSTNLPEAYE 85
Query: 128 TTLTVKEAVYYSAQLQLPD-----TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK 182
+TV + VY +L+ D M K+ K +G ++ + ++ +LS GQ
Sbjct: 86 IGVTVNDIVYLYEELKGLDRDLFLEMLKALK----------LG-EEILRRKLYKLSAGQS 134
Query: 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
V S+ + ++P+++ LDEP +D AA +V+SR K ++GI
Sbjct: 135 VLVRTSLALASQPEIVGLDEPFENVD-AARRHVISRYIKEYGKEGI 179
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 15/162 (9%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114
++ +L D++ PG +L I+G SG GKTTLL LAG D+ G+I ++G K +
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS---GEISLSG-KTIFSK 71
Query: 115 GTS--------AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166
T+ Y+ Q+ L LTV + Y T + +++R E + G+
Sbjct: 72 NTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRT---AQERQRIEAMLELTGI 128
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+ LSGGQ++R +++ + P+L+ LDEP S LD
Sbjct: 129 SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 29/160 (18%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128
G L+A++G G GK++LL AL L + G + I G ++AY Q+D+L
Sbjct: 31 GALVAVVGQVGCGKSSLLSAL---LAEMDKVEGHVAIKG---SVAYVPQQAWIQNDSLRE 84
Query: 129 TLTVK---EAVYYSAQLQ----LPD--TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179
+ E YY + +Q LPD +P D+ E I E G+ LSG
Sbjct: 85 NILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE-----IGEKGVN---------LSG 130
Query: 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219
GQK+RVS++ + + + D+P S +D+ ++ +
Sbjct: 131 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL-----GSDTRQTGKILINGHKKALAYGTSAYV 120
K G ++ I+GP+G+GK+T + LAG+L G + G I + Y
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 121 TQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180
+ ++ V + + + + ++ + + K+D+ + E ++ + L++ + I+ LSGG
Sbjct: 104 GEIRPVVKPQYV-DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGG 162
Query: 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
+ +RV+I+ +L F DEP+S LD I +L + G++++ H
Sbjct: 163 ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE---GKSVLVVEH 216
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA 118
LE G K G ++ I+GP+G GKTT + LAG + GKI + T A
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAG---VEEPTEGKIEWDL--------TVA 350
Query: 119 YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178
Y Q TV E + +L K++ ++ +G+ D + + LS
Sbjct: 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDREVNELS 403
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
GG+ +RV+I+ +L + LDEP++ LD V I L +++
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKN 451
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT---GKILINGHKK 110
G L+ ++ G + I+GP+GSGK+TL++ + G L +D + K + N
Sbjct: 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSA---------QLQLPDTMPKSDKK-ERAEVT 160
L + Q + +TV E + L +PK ++ E+A
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 161 IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
+ + L + + LSGGQ + V I ++T PK++ +DEP +G+ ++ + + +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 221 KLGQRDGIGRTII 233
+L + GI II
Sbjct: 198 ELKAK-GITFLII 209
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT---GKILINGHKKALAYGTSAYVTQDDT 125
G + I+GP+GSGK+TL++ + G L +D + K + N L + Q
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ 92
Query: 126 LITTLTVKEAVYYSA---------QLQLPDTMPKSDKK-ERAEVTIREMGLQDAMNTRIR 175
+ +TV E + L +PK ++ E+A + + L + +
Sbjct: 93 PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152
Query: 176 RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
LSGGQ + V I ++T PK++ +DEP +G+ ++ + + + +L + GI II
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLII 209
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTR-QTGKILINGHK---------KALAYGTSAYVTQ 122
AI+G S SGK+T+++A+ L + R +G++L G + + + A V Q
Sbjct: 38 AIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQ 97
Query: 123 DDTLITTLTVKEAVYYSAQLQLPDT-MPKSDKKERAEVTIREMGL--QDAMNTRIRRLSG 179
T+K ++ ++ S+ E+A +R + L + +N+ +LSG
Sbjct: 98 AAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQLSG 157
Query: 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216
G K+RV I++ +L P +L LDEPTS LD +++
Sbjct: 158 GMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHII 194
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 32/215 (14%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+L+ LT PG + A++GP+GSGK+T+ AL L T GK+L++G + + Y
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTV-AALLQNLYQPT--GGKVLLDG-EPLVQYDHH 89
Query: 118 AYVTQ-----DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---- 168
TQ + L+ + +E + Y + ++ E E G D
Sbjct: 90 YLHTQVAAVGQEPLLFGRSFRENIAYG--------LTRTPTMEEITAVAMESGAHDFISG 141
Query: 169 ---AMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAK 221
+T + +LSGGQ++ V+++ ++ +P+LL LD+ TS LD+ V + +
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYE 201
Query: 222 LGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256
+ RT++ HQ S + + H++ L G
Sbjct: 202 --SPEWASRTVLLITHQLS--LAERAHHILFLKEG 232
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT---GKILINGHKK 110
G L+ ++ G + I+GP+GSGK+TL++ + G L +D + K + N
Sbjct: 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSA---------QLQLPDTMPKSDKK-ERAEVT 160
L + Q + +TV E + L +PK ++ E+A
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 161 IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
+ + L + + LSGGQ + V I ++T PK++ +D+P +G+ ++ + + +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 221 KLGQRDGIGRTII 233
+L + GI II
Sbjct: 198 ELKAK-GITFLII 209
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 22/210 (10%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKP-GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQ 99
KD+T T K S + ++ P G +A++G SGSGK+T+ + D+
Sbjct: 345 KDVTFTYQGKEKPALSHV-----SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS-- 397
Query: 100 TGKILINGHKKALAYGTS-----AYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDK 153
G I ++GH T+ A V+Q+ L T+ + Y+A+ + + + ++ +
Sbjct: 398 -GSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAAR 455
Query: 154 KERAEVTIREM--GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211
+ A I M GL + LSGGQ++RV+I+ +L +L LDE TS LD+ +
Sbjct: 456 QAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515
Query: 212 SYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241
+ + + +L + +T++ H+ S+
Sbjct: 516 ERAIQAALDELQK----NKTVLVIAHRLST 541
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 20/225 (8%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL----GSDTRQTGKILINGH- 108
G IL+ ++ + G + ++GP+G+GKTT L ++ + G T ++ H
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 109 -KKALAY-GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166
+K ++Y A ++ I L Y S+ ++ + + ++ E+ GL
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA----GL 136
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
+ + R+ S G R++ I+ ++ P+L LDEPTSGLD + V +I K ++
Sbjct: 137 GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV-RKILKQASQE 195
Query: 227 GIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271
G+ TI+ S H EV L + L+ G V G E +
Sbjct: 196 GL--TILVSSHN-MLEVEFLCDRIALIHNGTIVETGTVEELKERY 237
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 18/218 (8%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
K+ + L+ + + G A++G +GSGK+T+ L ++ G I I G K
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE----GDIKIGG-KNV 83
Query: 112 LAYGTSAY-----VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM-- 164
Y ++ + DT++ T+K + Y + + K+ K + I +
Sbjct: 84 NKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPK 143
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
+ + +LSGG+++R++I+ +L PK++ DE TS LDS Y + L +
Sbjct: 144 KWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK 203
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
RT+I H+ S+ ++ LL+ G+ V G
Sbjct: 204 N----RTLIIIAHRLST--ISSAESIILLNKGKIVEKG 235
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 28/169 (16%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+L+ LT PG + A++GP+GSGK+T+ AL L T GK+L++G + + Y
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTV-AALLQNLYQPT--GGKVLLDG-EPLVQYDHH 89
Query: 118 AYVTQ-----DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---- 168
TQ + L+ + +E + Y + ++ E E G D
Sbjct: 90 YLHTQVAAVGQEPLLFGRSFRENIAYG--------LTRTPTMEEITAVAMESGAHDFISG 141
Query: 169 ---AMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210
+T + +LSGGQ++ V+++ ++ +P+LL LD TS LD+
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 34/222 (15%)
Query: 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115
S+ L L+G + G +L ++GP+G+GK+TLL AG T G I G
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGX----TSGKGSIQFAGQPLEAWSA 68
Query: 116 TS-----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV---TIREMGLQ 167
T AY++Q T V++ L D K R E+ + L
Sbjct: 69 TKLALHRAYLSQQQ----TPPFATPVWHYLTLHQHD-------KTRTELLNDVAGALALD 117
Query: 168 DAMNTRIRRLSGGQKRRVSISIEIL-----TRP--KLLFLDEPTSGLDSAASYYVMSRIA 220
D + +LSGG+ +RV ++ +L P +LL LDEP + LD A + ++
Sbjct: 118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILS 177
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
L Q+ G I+ S H + + H LL G+ + G
Sbjct: 178 ALSQQ---GLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASG 215
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 37/244 (15%)
Query: 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS-AYVT 121
G AK G ++ I+GP+G GKTT L G + +D + K+ L+Y +
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGS-----VTPEKQILSYKPQRIFPN 342
Query: 122 QDDTLITTL--TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179
D T+ L K+A+ S+ EVT R + L + + + LSG
Sbjct: 343 YDGTVQQYLENASKDALSTSSWF-------------FEEVTKR-LNLHRLLESNVNDLSG 388
Query: 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239
G+ +++ I+ + L LD+P+S LD Y V I ++ + R + I
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE----RKAVTFIIDH 444
Query: 240 SSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKE 299
+ + ++ G+ G AT+ P T + + FL+ + F+++
Sbjct: 445 DLSIHDYIADRIIVFKGEPEKAGLATS----------PV-TLKTGMNEFLRELEVTFRRD 493
Query: 300 AEEG 303
AE G
Sbjct: 494 AETG 497
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRL----GSDTRQTGKILINGH---KKALAYGTSAY 119
K +L ++G +G GKTT+L LAG + G + GK + K+ Y Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQ--LPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL 177
+ L ++ Y S L+ + + + K D++ + + + + + N L
Sbjct: 83 SNE---LKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANIL 139
Query: 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
SGG +R+ ++ +L + D+P+S LD
Sbjct: 140 SGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 34/222 (15%)
Query: 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115
S+ L L+G + G +L ++GP+G+GK+TLL AG T G I G
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGX----TSGKGSIQFAGQPLEAWSA 68
Query: 116 TS-----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV---TIREMGLQ 167
T AY++Q T V++ L D K R E+ + L
Sbjct: 69 TKLALHRAYLSQQQ----TPPFATPVWHYLTLHQHD-------KTRTELLNDVAGALALD 117
Query: 168 DAMNTRIRRLSGGQKRRVSISIEIL-----TRP--KLLFLDEPTSGLDSAASYYVMSRIA 220
D + +LSGG+ +RV ++ +L P +LL LDEP + LD A + ++
Sbjct: 118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILS 177
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
L Q+ G I+ S H + + H LL G+ + G
Sbjct: 178 ALCQQ---GLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASG 215
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLS 178
V Q L + +TV E V A +Q+ + K D +ERA + ++G+ + A LS
Sbjct: 98 VFQHFNLWSHMTVLENVM-EAPIQVL-GLSKHDARERALKYLAKVGIDERAQGKYPVHLS 155
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
GGQ++RVSI+ + P +L DEPTS LD V+ + +L + G+T++ H+
Sbjct: 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE---GKTMVVVTHE 212
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 95/222 (42%), Gaps = 34/222 (15%)
Query: 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115
S+ L L+G + G +L ++GP+G+GK+TLL +AG T G I G
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWSA 68
Query: 116 TS-----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV---TIREMGLQ 167
T AY++Q T V++ L D K R E+ + L
Sbjct: 69 TKLALHRAYLSQQQ----TPPFATPVWHYLTLHQHD-------KTRTELLNDVAGALALD 117
Query: 168 DAMNTRIRRLSGGQKRRVSISIEIL-----TRP--KLLFLDEPTSGLDSAASYYVMSRIA 220
D + +LSGG+ +RV ++ +L P +LL LD+P + LD A + ++
Sbjct: 118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILS 177
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
L Q+ G I+ S H + + H LL G+ + G
Sbjct: 178 ALSQQ---GLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASG 215
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 34/222 (15%)
Query: 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115
S+ L L+G + G +L ++GP+G+GK+TLL +AG T G I G
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWSA 68
Query: 116 TS-----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV---TIREMGLQ 167
T AY++Q T V++ L D K R E+ + L
Sbjct: 69 TKLALHRAYLSQQQ----TPPFATPVWHYLTLHQHD-------KTRTELLNDVAGALALD 117
Query: 168 DAMNTRIRRLSGGQKRRVSISIEIL-----TRP--KLLFLDEPTSGLDSAASYYVMSRIA 220
D + +LSGG+ +RV ++ +L P +LL LD+P LD A + ++
Sbjct: 118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILS 177
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
L Q+ G I+ S H + + H LL G+ + G
Sbjct: 178 ALSQQ---GLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASG 215
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 30/208 (14%)
Query: 29 NVNEDD----GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTT 84
+V +DD G +T KDLT + +G ++ILE+++ PG + ++G +GSGK+T
Sbjct: 7 HVKKDDIWPSGGQMTVKDLT----AKYTEGGNAILENISFSISPGQRVGLLGRTGSGKST 62
Query: 85 LLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL 144
LL A L ++ G+I I+G S + Q + K ++ +
Sbjct: 63 LLSAFLRLLNTE----GEIQIDG-----VSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN 113
Query: 145 PDTMPKSDKKERAEVTIREMGLQDAMNTRIRR-----------LSGGQKRRVSISIEILT 193
D +E +V E+GL+ + + LS G K+ + ++ +L+
Sbjct: 114 LDPNAAHSDQEIWKVA-DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172
Query: 194 RPKLLFLDEPTSGLDSAASYYVMSRIAK 221
+ K+L LDEP++ LD +Y ++ R K
Sbjct: 173 KAKILLLDEPSAHLD-PVTYQIIRRTLK 199
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTT---LLDALAGRLGSDTRQTGKILINGHKKALAY 114
+L+ LT +PG + A++GP+GSGK+T LL L G GK L + L
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI 174
+A V Q+ + + Y Q + + + K A I GL +T +
Sbjct: 92 QVAA-VGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEV 148
Query: 175 ----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
+LSGGQ++ V+++ ++ +P +L LD+ TS LD+ + V
Sbjct: 149 DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 193
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDT 125
K G ++ I+GP+G+GKTT + LAG+L + + N + Y +
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER--- 170
Query: 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV--TIREMG----------LQDAMNTR 173
+ ++ V + Q D +PK+ K + E+ + E+G L++ ++
Sbjct: 171 -LKNGEIRPVV----KPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRE 225
Query: 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
+ +LSGG+ +RV+I+ +L + F DEP+S LD V I +L G+ ++
Sbjct: 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE---GKAVL 282
Query: 234 ASIH 237
H
Sbjct: 283 VVEH 286
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA 118
LE G + G ++ I+GP+G GKTT + LAG + GK+ + T A
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG---VEEPTEGKVEWDL--------TVA 420
Query: 119 YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178
Y Q TV E + +L K++ ++ +G+ D + + LS
Sbjct: 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRNVEDLS 473
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
GG+ +RV+I+ +L + LDEP++ LD V I L +++
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN 521
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDT 125
K G ++ I+GP+G+GKTT + LAG+L + + N + Y +
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER--- 156
Query: 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV--TIREMG----------LQDAMNTR 173
+ ++ V + Q D +PK+ K + E+ + E+G L++ ++
Sbjct: 157 -LKNGEIRPVV----KPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRE 211
Query: 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
+ +LSGG+ +RV+I+ +L + F DEP+S LD V I +L G+ ++
Sbjct: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE---GKAVL 268
Query: 234 ASIH 237
H
Sbjct: 269 VVEH 272
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA 118
LE G + G ++ I+GP+G GKTT + LAG + GK+ + T A
Sbjct: 358 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG---VEEPTEGKVEWDL--------TVA 406
Query: 119 YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178
Y Q TV E + +L K++ ++ +G+ D + + LS
Sbjct: 407 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRNVEDLS 459
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
GG+ +RV+I+ +L + LDEP++ LD V I L +++
Sbjct: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN 507
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+LE +T + G+++ GP+G GKTTLL ++ L G+I+ NG G
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPITKVKGKI 80
Query: 118 AYVTQDDTLITTLTVKE-----AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
++ ++ + ++V++ A Y ++ + M D E EV +
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM---DALESVEVL--------DLKK 129
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI 232
++ LS G RRV ++ +L ++ LD+P +D + + V+ I ++ + GI I
Sbjct: 130 KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI--VI 187
Query: 233 IAS 235
I+S
Sbjct: 188 ISS 190
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-----ALAYGTSAYVTQD 123
G +A++G SGSGK+T+ + D G+IL++GH A A V+Q+
Sbjct: 369 GKTVALVGRSGSGKSTIASLITRFYDIDE---GEILMDGHDLREYTLASLRNQVALVSQN 425
Query: 124 DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GLQDAMNTRIRRLSGGQ 181
L Y + + + ++ + A I +M GL + LSGGQ
Sbjct: 426 VHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ 485
Query: 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241
++R++I+ +L +L LDE TS LD+ + + + + +L + RT + H+ S+
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK----NRTSLVIAHRLST 541
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 20/141 (14%)
Query: 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQ-TGKILINGHKKALAYGTSAYVTQDDTLIT 128
+L +MG +G+GKTTL+ LAG L D Q K+ ++ + +A
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPG---------- 428
Query: 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188
TV++ + + Q + ++D ++ + + D ++ ++ LSGG+ +RV+I
Sbjct: 429 --TVRQLFFKKIRGQFLNPQFQTD-------VVKPLRIDDIIDQEVQHLSGGELQRVAIV 479
Query: 189 IEILTRPKLLFLDEPTSGLDS 209
+ + + +DEP++ LDS
Sbjct: 480 LALGIPADIYLIDEPSAYLDS 500
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 31/202 (15%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGR----LG--SDTRQTGKI--------LINGHKKAL 112
+PG +L ++G +G GK+T L LAG+ LG D + +I L N K L
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
A + +K V +L L M KS E + I+ + L++ +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGEL-LKLRMEKS--PEDVKRYIKILQLENVLKR 217
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI 232
I +LSGG+ +R +I + + + DEP+S LD V R+ I
Sbjct: 218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD------VKQRLN--------AAQI 263
Query: 233 IASIHQPSSEVFQLFHNLCLLS 254
I S+ P+ V + H+L +L
Sbjct: 264 IRSLLAPTKYVICVEHDLSVLD 285
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGH 108
++G + +L+D+ + G LLA+ G +G+GKT+LL + G L + +G+I
Sbjct: 29 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 88
Query: 109 KKALAYGTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGL 166
+ GT + +I ++ E Y S QL + + K +K+ + + E G+
Sbjct: 89 FSWIMPGTIK-----ENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN--IVLGEGGI 141
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGGQ+ R+S++ + L LD P LD
Sbjct: 142 T---------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 174
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGH 108
++G + +L+D+ + G LLA+ G +G+GKT+LL + G L + +G+I
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 76
Query: 109 KKALAYGTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGL 166
+ GT + +I ++ E Y S QL + + K +K+ + + E G+
Sbjct: 77 FSWIMPGTI-----KENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN--IVLGEGGI 129
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGGQ+ R+S++ + L LD P LD
Sbjct: 130 T---------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 14/180 (7%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-----ALAYGTSAYVTQD 123
G +A++G SGSGK+T+ + D G IL++GH A A V+Q+
Sbjct: 369 GKTVALVGRSGSGKSTIASLITRFYDIDE---GHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 124 DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GLQDAMNTRIRRLSGGQ 181
L Y + + + ++ + A I +M GL + LSGGQ
Sbjct: 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485
Query: 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241
++R++I+ +L +L LDE TS LD+ + + + + +L + RT + H+ S+
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK----NRTSLVIAHRLST 541
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 28/169 (16%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+L+ LT PG + A++GP+GSGK+T+ AL L T GK+L++G + + Y
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTV-AALLQNLYQPT--GGKVLLDG-EPLVQYDHH 89
Query: 118 AYVTQ-----DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---- 168
TQ + L+ + +E + Y + ++ E E G D
Sbjct: 90 YLHTQVAAVGQEPLLFGRSFRENIAYG--------LTRTPTMEEITAVAMESGAHDFISG 141
Query: 169 ---AMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210
+T + +L+ GQ++ V+++ ++ +P+LL LD TS LD+
Sbjct: 142 FPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAG 190
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 32/197 (16%)
Query: 17 MESSNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMG 76
E + + N+ N DD +F SN + +L+D+ + G LLA+ G
Sbjct: 22 FEKAKQNNNNRKTSNGDDSLFF----------SNFSLLGTPVLKDINFKIERGQLLAVAG 71
Query: 77 PSGSGKTTLLDALAGRL---GSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133
+G+GKT+LL + G L + +G+I + GT + ++ I ++
Sbjct: 72 STGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGT---IKEN---IIGVSYD 125
Query: 134 EAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191
E Y S QL + + K +K+ + + E G+ LSGGQ+ R+S++ +
Sbjct: 126 EYRYRSVIKACQLEEDISKFAEKDN--IVLGEGGIT---------LSGGQRARISLARAV 174
Query: 192 LTRPKLLFLDEPTSGLD 208
L LD P LD
Sbjct: 175 YKDADLYLLDSPFGYLD 191
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 21/156 (13%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGHKKALAY 114
+L+D+ + G LLA+ G +G+GKT+LL + G L + +G+I +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 115 GTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
GT + +I ++ E Y S QL + + K +K+ + + E G+
Sbjct: 113 GTIK-----ENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDN--IVLGEGGIT----- 160
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGGQ+ R+S++ + L LD P LD
Sbjct: 161 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 22/162 (13%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGH 108
++G + +L+D+ + G LLA+ G +G+GKT+LL + G L + +G+I
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 76
Query: 109 KKALAYGTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGL 166
+ GT + ++ I ++ E Y S QL + + K +K+ + + E G+
Sbjct: 77 FSWIMPGT---IKEN---IIGVSYDEYRYRSVIKACQLEEDISKFAEKDN--IVLGEGGI 128
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGGQ+ R+S++ + L LD P LD
Sbjct: 129 T---------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 161
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGHKKALAY 114
+L+D+ + G LLA+ G +G+GKT+LL + G L + +G+I +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112
Query: 115 GTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
GT + ++ I ++ E Y S QL + + K +K+ + + E G+
Sbjct: 113 GT---IKEN---IIGVSYDEYRYRSVIKACQLEEDISKFAEKDN--IVLGEGGIT----- 159
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGGQ+ R+S++ + L LD P LD
Sbjct: 160 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 28/154 (18%)
Query: 74 IMGPSGSGKTTLLDALA-GRL-GSDTRQTGKILINGHKKALAYGTSAYVTQD-DTLITTL 130
I GP+G GK+TL+ A+A G++ G T++ + + YV D D +
Sbjct: 466 ICGPNGCGKSTLMRAIANGQVDGFPTQEECR--------------TVYVEHDIDGTHSDT 511
Query: 131 TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-NTRIRRLSGGQKRRVSISI 189
+V + V+ S KE + + E G D M I LSGG K +++++
Sbjct: 512 SVLDFVFESG----------VGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALAR 561
Query: 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
+L +L LDEPT+ LD+ ++++ + G
Sbjct: 562 AVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG 595
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
++RIR LSGGQK ++ ++ RP L+ LDEPT+ LD
Sbjct: 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 72 LAIMGPSGSGKTTLLDALAGRL 93
+A++GP+G+GK+TL++ L G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 21/156 (13%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD---TRQTGKILINGHKKALAY 114
+L+++ + G +LAI G +GSGKT+LL + G L + + +G++ +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 115 GTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
GT + +I+ ++ E Y S QL + K E+ + E G+
Sbjct: 113 GTIK-----ENIISGVSYDEYRYKSVVKACQLQQDITKF--AEQDNTVLGEGGVT----- 160
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGGQ+ R+S++ + L LD P LD
Sbjct: 161 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
++RIR LSGGQK ++ ++ RP L+ LDEPT+ LD
Sbjct: 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 28/154 (18%)
Query: 74 IMGPSGSGKTTLLDALA-GRL-GSDTRQTGKILINGHKKALAYGTSAYVTQD-DTLITTL 130
I GP+G GK+TL A+A G++ G T++ + + YV D D +
Sbjct: 466 ICGPNGCGKSTLXRAIANGQVDGFPTQEECR--------------TVYVEHDIDGTHSDT 511
Query: 131 TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISI 189
+V + V+ S KE + + E G D + I LSGG K +++++
Sbjct: 512 SVLDFVFESG----------VGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALAR 561
Query: 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
+L +L LDEPT+ LD+ ++++ + G
Sbjct: 562 AVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG 595
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 72 LAIMGPSGSGKTTLLDALAGRL 93
+A++GP+G+GK+TL++ L G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
++RIR LSGGQK ++ ++ RP L+ LDEPT+ LD
Sbjct: 890 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 28/154 (18%)
Query: 74 IMGPSGSGKTTLLDALA-GRL-GSDTRQTGKILINGHKKALAYGTSAYVTQD-DTLITTL 130
I GP+G GK+TL A+A G++ G T++ + + YV D D +
Sbjct: 460 ICGPNGCGKSTLXRAIANGQVDGFPTQEECR--------------TVYVEHDIDGTHSDT 505
Query: 131 TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISI 189
+V + V+ S KE + + E G D + I LSGG K +++++
Sbjct: 506 SVLDFVFESG----------VGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALAR 555
Query: 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
+L +L LDEPT+ LD+ ++++ + G
Sbjct: 556 AVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG 589
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 72 LAIMGPSGSGKTTLLDALAGRL 93
+A++GP+G+GK+TL++ L G L
Sbjct: 696 IAVIGPNGAGKSTLINVLTGEL 717
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD---TRQTGKILINGHKKALAY 114
+L+++ + G +LAI G +GSGKT+LL + G L + + +G++ +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 115 GTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
GT + +I ++ E Y S QL + K E+ + E G+
Sbjct: 113 GTIK-----ENIIRGVSYDEYRYKSVVKACQLQQDITKF--AEQDNTVLGEGGVT----- 160
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGGQ+ R+S++ + L LD P LD
Sbjct: 161 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD---TRQTGKILINGHKKALAY 114
+L+++ + G +LAI G +GSGKT+LL + G L + + +G++ +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 115 GTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
GT + +I ++ E Y S QL + K E+ + E G+
Sbjct: 113 GTIK-----ENIIFGVSYDEYRYKSVVKACQLQQDITKF--AEQDNTVLGEGGVT----- 160
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGGQ+ R+S++ + L LD P LD
Sbjct: 161 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD---TRQTGKILINGHKKALAY 114
+L+++ + G +LAI G +GSGKT+LL + G L + + +G++ +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 115 GTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
GT + +I ++ E Y S QL + K E+ + E G+
Sbjct: 113 GTIK-----ENIIFGVSYDEYRYKSVVKACQLQQDITKF--AEQDNTVLGEGGVT----- 160
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGGQ+ R+S++ + L LD P LD
Sbjct: 161 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 21/156 (13%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGHKKALAY 114
+L+D+ + G LLA+ G +G+GKT+LL + G L + +G+I +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 115 GTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
GT + +I ++ E Y S QL + + K +K+ + + E G+
Sbjct: 113 GTIK-----ENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN--IVLGEGGIT----- 160
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LS GQ+ ++S++ + L LD P LD
Sbjct: 161 ----LSEGQQAKISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 15/170 (8%)
Query: 53 KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL-------AGRLGSDTRQTGKILI 105
K +IL+ ++ G + G +G+GKTTLL+ L +G + + GK+
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 106 NGH--KKALAYGTSAYVT--QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTI 161
+ ++ + + + + + Q+ + + + A Q D + + A +
Sbjct: 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID----DEIRNEAHQLL 146
Query: 162 REMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211
+ +G I LS G+K+RV I+ + +P++L LDEP +GLD A
Sbjct: 147 KLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIA 196
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD---TRQTGKILINGHKKALAY 114
+L+++ + G +LAI G +GSGKT+LL + G L + + +G++ +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 115 GTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
GT + ++ I ++ E Y S QL + K E+ + E G+
Sbjct: 113 GT---IKEN---IIGVSYDEYRYKSVVKACQLQQDITKF--AEQDNTVLGEGGVT----- 159
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGGQ+ R+S++ + L LD P LD
Sbjct: 160 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGHKKALAY 114
+L+D+ + G LLA+ G +G+GKT+LL + G L + +G+I +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 115 GTSAYVTQDDTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
GT + ++ I ++ E Y S QL + + K +K+ + + E G+
Sbjct: 113 GT---IKEN---IIGVSYDEYRYRSVIKACQLEEDISKFAEKDN--IVLGEGGIT----- 159
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LS GQ+ ++S++ + L LD P LD
Sbjct: 160 ----LSEGQQAKISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK----- 109
+IL+ + G + A+MGP+G+GK+TL LAG T + G+IL++G
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD-PEYTVERGEILLDGENILELS 73
Query: 110 -KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD 168
A Q + +T+ + + Q +L + ++ + + + + +
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE 133
Query: 169 AMNTRI--RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211
+ +R SGG+K+R I ++ P LDE SGLD A
Sbjct: 134 SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA 178
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 156 RAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTRPK---LLFLDEPTSGLDSAA 211
RA T+RE+GL + LSGG+ +R+ ++ E+ + + LDEPT+GL A
Sbjct: 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD 768
Query: 212 SYYVMSRIAKLGQRDGIGRTIIASIHQ 238
+ ++ KL G T+IA H+
Sbjct: 769 VERLQRQLVKLVD---AGNTVIAVEHK 792
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA--YVTQD----DTL 126
I+GP GSGK T+ +A G +G L K + G A Y+ + D +
Sbjct: 31 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 90
Query: 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184
IT L + E Q L D P++ + A I E+ L ++N L RR
Sbjct: 91 ITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR 148
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA--YVTQD----DTL 126
I+GP GSGK T+ +A G +G L K + G A Y+ + D +
Sbjct: 9 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 68
Query: 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184
IT L + E Q L D P++ + A I E+ L ++N L RR
Sbjct: 69 ITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR 126
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 177 LSGGQKRRVSISIEILTRPK---LLFLDEPTSGL---DSAASYYVMSRIAKLG 223
LSGG+ +RV ++ E+ R L LDEPT+GL D A V+ R+ G
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 49 SNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS 95
N ++ I+E + G + + GP G+GKT L A+A LGS
Sbjct: 43 ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 50 NGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS 95
N ++ I+E + G + + GP G+GKT L A+A LGS
Sbjct: 58 NAREACGVIVELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGS 103
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 177 LSGGQKRRVSISIEILTRPK---LLFLDEPTSGL---DSAASYYVMSRIAKLG 223
LSGG+ +RV ++ E+ R L LDEPT+GL D A V+ R+ G
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 177 LSGGQKRRVSISIEILTRPK---LLFLDEPTSGL---DSAASYYVMSRIAKLG 223
LSGG+ +RV ++ E+ R L LDEPT+GL D A V+ R+ G
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 70 HLLAIMGPSGSGKTTLLDALAGRLG 94
+ +I+GP+GSGK+ ++DA++ LG
Sbjct: 27 NFTSIIGPNGSGKSNMMDAISFVLG 51
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 47 IVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA-GRLG 94
+V G G SS+L+ L Y K G L+ +G +GKTTLL L RLG
Sbjct: 14 LVPRGSNGFSSVLQFLGLYKKSGKLV-FLGLDNAGKTTLLHMLKDDRLG 61
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQ 99
AI+GP+GSGK+ ++DA+ G +++
Sbjct: 28 AIVGPNGSGKSNIIDAIKWVFGEQSKK 54
>pdb|3UPU|A Chain A, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|B Chain B, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|C Chain C, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
Length = 459
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94
G T+ DLT G+K + +I+ K H + I GP+G+G TTL + L
Sbjct: 18 GSHXTFDDLT-----EGQKNAFNIVXKAIKEKK--HHVTINGPAGTGATTLTKFIIEALI 70
Query: 95 SDTRQTGKIL---INGHKKALAY--GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD 146
S T +TG IL + KK L+ G A I +T +E V + Q ++PD
Sbjct: 71 S-TGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFE-QKEVPD 125
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 24 ANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDL-----TGYAKPGHLLAIMGPS 78
AN ++N D+G + + D+ ++ IL L TG P L + GP
Sbjct: 98 ANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPP 157
Query: 79 GSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTL 130
G+GKT L A+A ++ N +L TS YV + + L+ L
Sbjct: 158 GNGKTMLAKAVAA-------ESNATFFNISAASL---TSKYVGEGEKLVRAL 199
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 68 PGHLL-AIMGPSGSGKTTLLDALAGRLGSDTRQTGKI 103
PG ++ A+ GPSG+GK+++ LA +LG+ TG +
Sbjct: 2 PGSMVVAVDGPSGTGKSSVAKELARQLGASYLDTGAM 38
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
A++GP+GSGK+ + DA+ LG Q+ + L G + + + S
Sbjct: 28 AVVGPNGSGKSNITDAIRWVLGE---QSARSLRGGKMEDIIFAGS 69
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 54 GSSSILEDLTGYAKPG---HLLAIMGPSGSGKTTLLDALAGRL-GSDTRQT 100
G I++ L Y K G HLL GP G GKTT ALA L G + R
Sbjct: 29 GQEHIVKRLKHYVKTGSMPHLL-FAGPPGVGKTTAALALARELFGENWRHN 78
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
LE +P L + GP G GKTTL +A LG + R T
Sbjct: 28 LEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
LE +P L + GP G GKTTL +A LG + R T
Sbjct: 28 LEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
LE +P L + GP G GKTTL +A LG + R T
Sbjct: 28 LEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 35 GVFLTWKDLTVTIVSNGKKGSSSIL-----EDLTGYAKPGHLLAIMGPSGSGKTTLLDAL 89
G + W D+ V+ IL E TG P L + GP G+GKT L A+
Sbjct: 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAV 74
Query: 90 A 90
A
Sbjct: 75 A 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,591,928
Number of Sequences: 62578
Number of extensions: 507470
Number of successful extensions: 1954
Number of sequences better than 100.0: 136
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1717
Number of HSP's gapped (non-prelim): 179
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)