Query 044030
Match_columns 449
No_of_seqs 382 out of 3275
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:48:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 3.8E-72 8.3E-77 603.1 43.4 395 31-441 19-423 (613)
2 PLN03211 ABC transporter G-25; 100.0 1.1E-67 2.4E-72 573.7 48.6 393 33-439 35-470 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 1.8E-67 3.8E-72 570.8 44.7 374 54-439 36-424 (617)
4 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-65 2.4E-70 596.0 48.3 383 36-437 758-1158(1394)
5 TIGR00956 3a01205 Pleiotropic 100.0 6.5E-66 1.4E-70 597.9 45.4 400 34-439 26-484 (1394)
6 PLN03140 ABC transporter G fam 100.0 2.2E-65 4.8E-70 592.3 47.9 386 35-439 865-1279(1470)
7 PLN03140 ABC transporter G fam 100.0 2.6E-64 5.7E-69 583.4 43.5 402 34-439 128-601 (1470)
8 KOG0065 Pleiotropic drug resis 100.0 8.5E-66 1.9E-70 566.0 29.2 380 37-436 787-1184(1391)
9 COG1126 GlnQ ABC-type polar am 100.0 3.8E-57 8.2E-62 415.2 23.9 216 37-267 2-223 (240)
10 KOG0065 Pleiotropic drug resis 100.0 1.3E-56 2.7E-61 493.7 27.1 380 56-439 128-523 (1391)
11 COG1125 OpuBA ABC-type proline 100.0 3.2E-54 7E-59 403.4 23.7 217 37-268 1-224 (309)
12 COG1135 AbcC ABC-type metal io 100.0 1.5E-53 3.2E-58 409.8 23.6 221 37-267 1-229 (339)
13 COG1116 TauB ABC-type nitrate/ 100.0 5.3E-53 1.2E-57 398.0 24.2 205 37-256 3-207 (248)
14 COG1127 Ttg2A ABC-type transpo 100.0 1E-52 2.2E-57 391.4 23.8 220 35-268 6-234 (263)
15 COG1120 FepC ABC-type cobalami 100.0 1.4E-52 3.1E-57 401.6 23.4 220 37-268 2-227 (258)
16 COG1131 CcmA ABC-type multidru 100.0 5.3E-52 1.1E-56 410.9 27.7 221 37-272 4-229 (293)
17 COG3839 MalK ABC-type sugar tr 100.0 4.7E-52 1E-56 412.2 25.8 217 37-268 3-222 (338)
18 COG1136 SalX ABC-type antimicr 100.0 6.8E-52 1.5E-56 389.7 25.3 209 38-258 2-220 (226)
19 COG3842 PotA ABC-type spermidi 100.0 3.3E-52 7.1E-57 415.4 23.1 218 36-267 4-224 (352)
20 COG3638 ABC-type phosphate/pho 100.0 3.1E-51 6.7E-56 380.5 22.0 223 36-269 2-237 (258)
21 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.1E-50 2.3E-55 386.9 25.6 219 36-268 3-226 (254)
22 COG1118 CysA ABC-type sulfate/ 100.0 3.2E-51 6.9E-56 392.8 21.1 220 36-268 1-226 (345)
23 COG4555 NatA ABC-type Na+ tran 100.0 2.6E-51 5.7E-56 371.9 17.9 218 37-269 1-222 (245)
24 PRK13537 nodulation ABC transp 100.0 2E-49 4.3E-54 395.4 28.8 217 37-269 7-227 (306)
25 TIGR02314 ABC_MetN D-methionin 100.0 4E-49 8.7E-54 397.7 29.7 220 37-267 1-228 (343)
26 PRK11650 ugpC glycerol-3-phosp 100.0 5.7E-49 1.2E-53 399.1 29.8 218 37-268 3-223 (356)
27 TIGR03265 PhnT2 putative 2-ami 100.0 6.7E-49 1.5E-53 398.1 30.0 217 37-268 4-223 (353)
28 PRK11432 fbpC ferric transport 100.0 1.2E-48 2.5E-53 395.9 30.2 217 37-268 6-225 (351)
29 COG1124 DppF ABC-type dipeptid 100.0 3.8E-49 8.2E-54 369.0 23.8 220 36-268 2-230 (252)
30 cd03261 ABC_Org_Solvent_Resist 100.0 1.6E-48 3.5E-53 374.5 28.1 216 38-267 1-224 (235)
31 TIGR03258 PhnT 2-aminoethylpho 100.0 2.1E-48 4.5E-53 395.4 29.9 217 37-268 5-227 (362)
32 COG2884 FtsE Predicted ATPase 100.0 2.7E-49 5.9E-54 355.9 19.9 212 37-263 1-220 (223)
33 PRK09452 potA putrescine/sperm 100.0 3E-48 6.5E-53 395.7 30.2 219 35-268 12-233 (375)
34 PRK10851 sulfate/thiosulfate t 100.0 3E-48 6.4E-53 393.4 30.0 221 36-268 1-225 (353)
35 PRK13536 nodulation factor exp 100.0 2.9E-48 6.2E-53 391.7 29.7 219 35-269 39-261 (340)
36 COG1117 PstB ABC-type phosphat 100.0 5.3E-49 1.2E-53 360.1 21.0 217 36-267 6-235 (253)
37 cd03265 ABC_DrrA DrrA is the A 100.0 6.2E-48 1.3E-52 366.9 27.1 214 38-266 1-218 (220)
38 TIGR01288 nodI ATP-binding ABC 100.0 9.1E-48 2E-52 383.1 29.4 218 36-269 3-224 (303)
39 cd03293 ABC_NrtD_SsuB_transpor 100.0 9E-48 1.9E-52 365.8 27.6 217 38-265 1-219 (220)
40 cd03259 ABC_Carb_Solutes_like 100.0 6.1E-48 1.3E-52 365.1 26.3 210 38-262 1-213 (213)
41 COG1122 CbiO ABC-type cobalt t 100.0 2.9E-48 6.3E-53 370.7 24.2 218 37-268 3-227 (235)
42 cd03296 ABC_CysA_sulfate_impor 100.0 1.3E-47 2.8E-52 369.3 28.6 220 36-267 1-224 (239)
43 PRK11607 potG putrescine trans 100.0 1.7E-47 3.6E-52 390.7 30.7 219 35-268 17-238 (377)
44 PRK11000 maltose/maltodextrin 100.0 2E-47 4.2E-52 390.0 30.2 217 37-268 3-222 (369)
45 TIGR03522 GldA_ABC_ATP gliding 100.0 2E-47 4.3E-52 380.4 29.0 216 37-269 2-221 (301)
46 PRK11153 metN DL-methionine tr 100.0 2.2E-47 4.7E-52 386.3 29.6 221 37-268 1-229 (343)
47 COG1137 YhbG ABC-type (unclass 100.0 2.8E-49 6.1E-54 358.3 14.0 218 37-268 4-227 (243)
48 COG4152 ABC-type uncharacteriz 100.0 1.8E-48 4E-53 362.6 18.9 219 37-271 2-221 (300)
49 TIGR00960 3a0501s02 Type II (G 100.0 1.2E-47 2.6E-52 363.8 25.0 207 38-258 2-216 (216)
50 cd03301 ABC_MalK_N The N-termi 100.0 2.7E-47 5.8E-52 360.5 27.0 210 38-262 1-213 (213)
51 cd03258 ABC_MetN_methionine_tr 100.0 2.7E-47 5.8E-52 365.5 27.2 219 38-267 2-228 (233)
52 TIGR01188 drrA daunorubicin re 100.0 1.7E-47 3.6E-52 381.1 26.5 206 54-269 4-213 (302)
53 cd03219 ABC_Mj1267_LivG_branch 100.0 3.7E-47 7.9E-52 365.1 26.9 217 38-267 1-230 (236)
54 cd03218 ABC_YhbG The ABC trans 100.0 3.9E-47 8.4E-52 364.0 26.9 214 38-267 1-220 (232)
55 TIGR01186 proV glycine betaine 100.0 3.5E-47 7.7E-52 385.7 28.0 206 54-268 4-218 (363)
56 PRK13637 cbiO cobalt transport 100.0 1E-46 2.2E-51 372.9 30.5 222 37-268 2-233 (287)
57 COG3840 ThiQ ABC-type thiamine 100.0 9.7E-48 2.1E-52 343.5 20.7 213 38-267 2-217 (231)
58 PRK13643 cbiO cobalt transport 100.0 6.9E-47 1.5E-51 374.2 28.5 232 37-280 1-247 (288)
59 cd03256 ABC_PhnC_transporter A 100.0 6.2E-47 1.3E-51 364.5 27.0 218 38-267 1-232 (241)
60 cd03263 ABC_subfamily_A The AB 100.0 5.8E-47 1.3E-51 360.0 26.4 215 38-267 1-219 (220)
61 COG0411 LivG ABC-type branched 100.0 8.2E-48 1.8E-52 360.2 20.1 221 36-268 3-238 (250)
62 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.4E-47 7.4E-52 361.1 24.7 209 38-258 1-218 (218)
63 cd03269 ABC_putative_ATPase Th 100.0 7.6E-47 1.7E-51 356.8 25.6 209 38-262 1-210 (210)
64 TIGR02315 ABC_phnC phosphonate 100.0 6E-47 1.3E-51 365.2 25.3 219 38-267 2-233 (243)
65 PRK13634 cbiO cobalt transport 100.0 2.3E-46 4.9E-51 370.9 29.8 221 37-268 2-234 (290)
66 PRK11831 putative ABC transpor 100.0 2.4E-46 5.2E-51 366.9 29.3 217 37-267 7-231 (269)
67 cd03266 ABC_NatA_sodium_export 100.0 1.2E-46 2.5E-51 357.4 26.1 213 38-262 2-218 (218)
68 PRK11248 tauB taurine transpor 100.0 2E-46 4.3E-51 364.7 28.3 213 38-265 2-216 (255)
69 PRK09493 glnQ glutamine ABC tr 100.0 2.2E-46 4.8E-51 360.8 28.1 215 38-267 2-223 (240)
70 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.9E-46 4.2E-51 361.8 27.6 215 38-267 1-223 (242)
71 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.4E-46 7.3E-51 358.8 28.9 215 38-268 2-220 (236)
72 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-46 2.9E-51 357.8 25.5 212 38-267 1-219 (222)
73 PRK11629 lolD lipoprotein tran 100.0 4.3E-46 9.4E-51 357.4 29.0 216 37-264 5-229 (233)
74 PRK09536 btuD corrinoid ABC tr 100.0 2.1E-46 4.5E-51 384.6 28.5 218 37-267 3-226 (402)
75 PRK13651 cobalt transporter AT 100.0 3.4E-46 7.3E-51 371.7 29.1 221 37-268 2-253 (305)
76 PRK15079 oligopeptide ABC tran 100.0 4.4E-46 9.6E-51 374.6 30.2 226 35-268 6-250 (331)
77 cd03260 ABC_PstB_phosphate_tra 100.0 1.2E-46 2.6E-51 359.6 24.5 212 38-266 1-226 (227)
78 COG0410 LivF ABC-type branched 100.0 1.2E-46 2.6E-51 349.8 23.7 216 37-268 3-225 (237)
79 PRK13647 cbiO cobalt transport 100.0 6.3E-46 1.4E-50 364.8 30.0 216 37-267 4-225 (274)
80 PRK13646 cbiO cobalt transport 100.0 3.7E-46 7.9E-51 368.7 28.4 222 36-268 1-234 (286)
81 COG4175 ProV ABC-type proline/ 100.0 4.6E-47 1E-51 364.6 21.0 224 36-268 3-253 (386)
82 PRK11264 putative amino-acid A 100.0 4.3E-46 9.3E-51 360.9 28.0 216 37-267 3-231 (250)
83 cd03268 ABC_BcrA_bacitracin_re 100.0 1.4E-46 2.9E-51 354.6 23.8 205 38-262 1-208 (208)
84 PRK11247 ssuB aliphatic sulfon 100.0 3.3E-46 7.2E-51 363.4 26.9 209 36-265 11-219 (257)
85 PRK13650 cbiO cobalt transport 100.0 6.5E-46 1.4E-50 365.6 29.0 219 37-268 4-228 (279)
86 cd03264 ABC_drug_resistance_li 100.0 3E-46 6.5E-51 353.0 25.2 207 38-262 1-211 (211)
87 TIGR02673 FtsE cell division A 100.0 3.1E-46 6.6E-51 353.5 25.3 205 38-257 2-214 (214)
88 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.1E-46 6.8E-51 366.1 26.2 214 39-267 26-248 (269)
89 PRK10070 glycine betaine trans 100.0 6.6E-46 1.4E-50 380.6 29.6 205 55-268 40-253 (400)
90 PRK13631 cbiO cobalt transport 100.0 1.2E-45 2.6E-50 370.0 30.7 222 35-268 19-264 (320)
91 TIGR00972 3a0107s01c2 phosphat 100.0 7E-46 1.5E-50 358.9 27.9 216 38-267 2-230 (247)
92 PRK10895 lipopolysaccharide AB 100.0 5.6E-46 1.2E-50 358.3 26.9 216 37-267 3-224 (241)
93 PRK11124 artP arginine transpo 100.0 6.7E-46 1.4E-50 357.9 27.4 216 36-267 1-228 (242)
94 cd03292 ABC_FtsE_transporter F 100.0 4.1E-46 9E-51 352.5 25.3 206 38-258 1-214 (214)
95 PRK11022 dppD dipeptide transp 100.0 1.4E-45 3E-50 370.6 30.2 225 37-268 3-242 (326)
96 TIGR02211 LolD_lipo_ex lipopro 100.0 8.1E-46 1.8E-50 352.3 26.9 210 38-259 2-220 (221)
97 PRK09473 oppD oligopeptide tra 100.0 1.9E-45 4E-50 370.1 30.8 227 35-268 10-250 (330)
98 PRK13641 cbiO cobalt transport 100.0 1.2E-45 2.5E-50 365.3 28.8 220 37-268 2-233 (287)
99 COG0444 DppD ABC-type dipeptid 100.0 6.1E-46 1.3E-50 361.3 26.0 224 38-268 2-242 (316)
100 PRK11300 livG leucine/isoleuci 100.0 1.4E-45 3E-50 358.3 28.3 219 37-267 5-241 (255)
101 PRK13636 cbiO cobalt transport 100.0 2.1E-45 4.6E-50 362.7 30.0 218 37-268 5-230 (283)
102 PRK10908 cell division protein 100.0 1E-45 2.2E-50 352.1 26.6 208 38-260 2-217 (222)
103 PRK13548 hmuV hemin importer A 100.0 1.7E-45 3.6E-50 358.8 28.6 216 37-267 2-228 (258)
104 PRK09984 phosphonate/organopho 100.0 1.3E-45 2.9E-50 360.1 27.9 222 37-267 4-240 (262)
105 cd03226 ABC_cobalt_CbiO_domain 100.0 3.2E-46 7E-51 351.4 22.8 200 40-259 2-205 (205)
106 TIGR03005 ectoine_ehuA ectoine 100.0 1.5E-45 3.3E-50 357.6 28.2 216 38-267 1-234 (252)
107 PRK10619 histidine/lysine/argi 100.0 1.6E-45 3.5E-50 358.6 28.3 216 37-267 5-239 (257)
108 PRK11614 livF leucine/isoleuci 100.0 1.1E-45 2.4E-50 355.3 26.5 213 37-267 5-224 (237)
109 PRK13638 cbiO cobalt transport 100.0 1.8E-45 3.8E-50 361.1 28.0 216 37-268 1-224 (271)
110 cd03262 ABC_HisP_GlnQ_permease 100.0 8.5E-46 1.8E-50 350.1 24.5 206 38-258 1-213 (213)
111 PRK11308 dppF dipeptide transp 100.0 3.4E-45 7.5E-50 367.7 30.4 223 37-268 5-243 (327)
112 TIGR03411 urea_trans_UrtD urea 100.0 2.4E-45 5.1E-50 354.0 27.8 217 37-267 2-229 (242)
113 cd03257 ABC_NikE_OppD_transpor 100.0 1.9E-45 4.1E-50 351.1 26.8 215 38-262 2-228 (228)
114 PRK13649 cbiO cobalt transport 100.0 3.7E-45 8E-50 360.4 29.5 221 36-268 1-233 (280)
115 PRK14268 phosphate ABC transpo 100.0 3.1E-45 6.7E-50 356.8 28.6 217 36-267 11-240 (258)
116 PRK13652 cbiO cobalt transport 100.0 2.7E-45 5.9E-50 360.9 28.4 218 37-268 3-226 (277)
117 cd03225 ABC_cobalt_CbiO_domain 100.0 1.1E-45 2.3E-50 349.1 24.4 204 40-257 2-211 (211)
118 cd03234 ABCG_White The White s 100.0 2.3E-45 5E-50 350.8 26.8 221 37-262 3-226 (226)
119 TIGR03415 ABC_choXWV_ATP choli 100.0 2.6E-45 5.7E-50 373.8 28.9 207 53-268 34-253 (382)
120 PRK11231 fecE iron-dicitrate t 100.0 2.1E-45 4.4E-50 357.4 26.6 219 36-267 1-225 (255)
121 PRK14273 phosphate ABC transpo 100.0 4E-45 8.8E-50 355.0 28.6 218 36-267 6-236 (254)
122 PRK13635 cbiO cobalt transport 100.0 2.7E-45 5.8E-50 361.3 27.5 218 37-268 5-228 (279)
123 cd03235 ABC_Metallic_Cations A 100.0 8.5E-46 1.8E-50 350.4 23.0 209 40-262 2-213 (213)
124 PRK14267 phosphate ABC transpo 100.0 4.2E-45 9E-50 354.7 28.2 219 37-267 4-235 (253)
125 TIGR03410 urea_trans_UrtE urea 100.0 2.1E-45 4.5E-50 351.8 25.4 212 38-267 1-219 (230)
126 PRK13644 cbiO cobalt transport 100.0 2.6E-45 5.6E-50 360.5 26.7 215 38-268 2-223 (274)
127 PRK10575 iron-hydroxamate tran 100.0 4.4E-45 9.5E-50 357.1 28.2 220 36-267 10-235 (265)
128 PRK15093 antimicrobial peptide 100.0 6.9E-45 1.5E-49 366.4 30.2 227 37-268 3-247 (330)
129 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.9E-45 6.3E-50 346.3 25.7 208 38-262 1-211 (211)
130 PRK10584 putative ABC transpor 100.0 6.7E-45 1.4E-49 347.8 28.5 212 37-260 6-226 (228)
131 PRK10253 iron-enterobactin tra 100.0 5E-45 1.1E-49 356.7 28.0 222 35-268 5-232 (265)
132 PRK14247 phosphate ABC transpo 100.0 6.6E-45 1.4E-49 352.6 28.4 219 37-267 3-232 (250)
133 PRK13632 cbiO cobalt transport 100.0 4.6E-45 9.9E-50 358.2 27.4 220 35-268 5-230 (271)
134 PRK13639 cbiO cobalt transport 100.0 9.4E-45 2E-49 356.7 29.6 216 38-268 2-225 (275)
135 TIGR02769 nickel_nikE nickel i 100.0 6.2E-45 1.3E-49 356.1 28.1 222 37-267 2-238 (265)
136 TIGR01978 sufC FeS assembly AT 100.0 5.1E-45 1.1E-49 351.6 27.0 218 38-268 1-233 (243)
137 TIGR03740 galliderm_ABC gallid 100.0 3.7E-45 7.9E-50 348.6 25.5 208 38-265 1-209 (223)
138 PRK10744 pstB phosphate transp 100.0 1E-44 2.2E-49 353.5 29.0 220 34-267 10-242 (260)
139 PRK14250 phosphate ABC transpo 100.0 5.3E-45 1.1E-49 351.7 26.6 211 37-267 3-219 (241)
140 PRK14242 phosphate transporter 100.0 9.6E-45 2.1E-49 352.1 28.5 217 37-267 6-235 (253)
141 PRK10771 thiQ thiamine transpo 100.0 7.3E-45 1.6E-49 348.6 27.3 214 38-268 2-218 (232)
142 PRK13648 cbiO cobalt transport 100.0 1.4E-44 3E-49 354.4 29.7 218 37-268 7-230 (269)
143 PRK13633 cobalt transporter AT 100.0 8.5E-45 1.8E-49 357.9 28.0 221 37-268 4-232 (280)
144 cd03300 ABC_PotA_N PotA is an 100.0 1.3E-44 2.8E-49 347.0 28.2 215 38-267 1-218 (232)
145 PRK13640 cbiO cobalt transport 100.0 8.6E-45 1.9E-49 358.2 27.3 221 37-268 5-231 (282)
146 TIGR00968 3a0106s01 sulfate AB 100.0 1.2E-44 2.7E-49 348.3 27.7 216 38-268 1-219 (237)
147 PRK14269 phosphate ABC transpo 100.0 1.5E-44 3.1E-49 349.6 28.1 218 37-267 2-228 (246)
148 PRK13645 cbiO cobalt transport 100.0 1.1E-44 2.3E-49 358.7 27.8 220 37-268 6-239 (289)
149 PRK15112 antimicrobial peptide 100.0 1.1E-44 2.4E-49 354.7 27.6 222 37-267 4-237 (267)
150 PRK14241 phosphate transporter 100.0 1.7E-44 3.6E-49 351.6 28.6 218 37-267 4-240 (258)
151 TIGR03873 F420-0_ABC_ATP propo 100.0 1E-44 2.3E-49 352.7 27.0 217 38-267 2-224 (256)
152 PRK11144 modC molybdate transp 100.0 1E-44 2.3E-49 368.0 27.8 207 38-268 2-217 (352)
153 PRK14256 phosphate ABC transpo 100.0 2.6E-44 5.7E-49 348.9 29.3 218 37-267 4-234 (252)
154 cd03299 ABC_ModC_like Archeal 100.0 2E-44 4.4E-49 346.4 28.2 214 38-267 1-217 (235)
155 PRK14274 phosphate ABC transpo 100.0 2E-44 4.4E-49 351.2 28.5 218 36-267 11-241 (259)
156 TIGR02142 modC_ABC molybdenum 100.0 1.1E-44 2.3E-49 368.2 27.6 208 42-268 4-220 (354)
157 PRK14245 phosphate ABC transpo 100.0 2.7E-44 5.8E-49 348.5 28.7 218 36-268 2-233 (250)
158 TIGR01184 ntrCD nitrate transp 100.0 6.9E-45 1.5E-49 348.6 24.2 200 59-265 1-200 (230)
159 cd03267 ABC_NatA_like Similar 100.0 9.9E-45 2.1E-49 348.8 25.3 200 54-262 32-236 (236)
160 TIGR01277 thiQ thiamine ABC tr 100.0 2.3E-44 5.1E-49 340.8 26.9 209 38-263 1-212 (213)
161 PRK14239 phosphate transporter 100.0 4.5E-44 9.7E-49 347.1 28.6 217 37-267 5-234 (252)
162 PRK14235 phosphate transporter 100.0 4.5E-44 9.9E-49 350.4 28.8 218 37-267 19-249 (267)
163 PRK14237 phosphate transporter 100.0 6.5E-44 1.4E-48 349.3 29.8 226 27-267 11-249 (267)
164 PRK14270 phosphate ABC transpo 100.0 4E-44 8.6E-49 347.5 28.0 218 36-267 3-233 (251)
165 PRK14248 phosphate ABC transpo 100.0 5.3E-44 1.2E-48 350.0 28.8 220 34-267 18-250 (268)
166 COG4525 TauB ABC-type taurine 100.0 8.2E-45 1.8E-49 328.0 21.1 220 37-269 3-224 (259)
167 PRK11701 phnK phosphonate C-P 100.0 4.9E-44 1.1E-48 348.3 28.3 217 37-267 6-239 (258)
168 PRK13547 hmuV hemin importer A 100.0 2.6E-44 5.6E-49 352.9 26.3 221 38-267 2-242 (272)
169 PRK14240 phosphate transporter 100.0 8E-44 1.7E-48 345.1 29.0 217 37-267 3-232 (250)
170 cd03297 ABC_ModC_molybdenum_tr 100.0 3.6E-44 7.8E-49 339.6 25.8 201 42-262 5-214 (214)
171 PRK14262 phosphate ABC transpo 100.0 7.9E-44 1.7E-48 345.1 28.5 218 37-268 3-233 (250)
172 PRK13549 xylose transporter AT 100.0 2.2E-44 4.8E-49 382.6 26.8 220 37-267 5-230 (506)
173 PRK10762 D-ribose transporter 100.0 2.1E-44 4.5E-49 382.4 26.4 218 37-267 4-228 (501)
174 cd03233 ABC_PDR_domain1 The pl 100.0 4.1E-44 9E-49 336.6 25.4 196 37-262 3-202 (202)
175 PRK14272 phosphate ABC transpo 100.0 9.4E-44 2E-48 344.9 28.7 220 36-268 3-235 (252)
176 PRK14259 phosphate ABC transpo 100.0 5.5E-44 1.2E-48 350.2 27.2 218 35-268 11-252 (269)
177 COG4181 Predicted ABC-type tra 100.0 5.2E-45 1.1E-49 323.0 17.7 212 37-260 6-226 (228)
178 PRK14244 phosphate ABC transpo 100.0 9.4E-44 2E-48 344.9 27.8 217 38-267 6-235 (251)
179 TIGR02982 heterocyst_DevA ABC 100.0 6.2E-44 1.3E-48 339.5 26.0 210 38-258 2-219 (220)
180 PRK13642 cbiO cobalt transport 100.0 1E-43 2.2E-48 349.7 28.2 219 37-268 4-228 (277)
181 PRK14255 phosphate ABC transpo 100.0 1.5E-43 3.2E-48 343.6 29.0 219 35-267 3-234 (252)
182 PRK14251 phosphate ABC transpo 100.0 1.3E-43 2.8E-48 343.8 28.3 217 37-267 4-233 (251)
183 PRK14260 phosphate ABC transpo 100.0 1.2E-43 2.7E-48 345.7 27.8 217 37-267 7-241 (259)
184 PRK09700 D-allose transporter 100.0 4E-44 8.7E-49 381.0 26.3 218 37-267 5-232 (510)
185 COG1123 ATPase components of v 100.0 6.9E-44 1.5E-48 369.7 26.9 226 37-269 5-244 (539)
186 TIGR02770 nickel_nikD nickel i 100.0 1E-43 2.2E-48 340.3 25.4 205 58-268 1-214 (230)
187 TIGR03608 L_ocin_972_ABC putat 100.0 5.7E-44 1.2E-48 335.9 23.2 197 40-253 1-206 (206)
188 PRK14253 phosphate ABC transpo 100.0 2.1E-43 4.5E-48 342.0 27.7 217 37-267 3-231 (249)
189 PRK14261 phosphate ABC transpo 100.0 3.1E-43 6.6E-48 341.7 28.9 217 37-267 6-235 (253)
190 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-43 2.4E-48 377.5 28.0 211 37-267 11-227 (510)
191 TIGR02323 CP_lyasePhnK phospho 100.0 2.4E-43 5.3E-48 342.3 28.0 217 37-267 3-236 (253)
192 PRK10418 nikD nickel transport 100.0 2.7E-43 5.8E-48 342.4 28.3 216 37-267 4-228 (254)
193 COG4559 ABC-type hemin transpo 100.0 4E-44 8.7E-49 327.5 20.7 218 37-268 1-229 (259)
194 PRK14258 phosphate ABC transpo 100.0 4E-43 8.6E-48 342.6 28.9 220 37-268 7-244 (261)
195 PRK14249 phosphate ABC transpo 100.0 4E-43 8.7E-48 340.5 28.5 217 37-267 4-233 (251)
196 PRK14275 phosphate ABC transpo 100.0 3.7E-43 7.9E-48 347.3 28.5 219 35-267 37-268 (286)
197 PRK14238 phosphate transporter 100.0 4.7E-43 1E-47 343.9 28.9 219 35-267 22-253 (271)
198 PRK14236 phosphate transporter 100.0 4.8E-43 1E-47 344.0 28.9 219 35-267 23-254 (272)
199 COG1123 ATPase components of v 100.0 1.3E-43 2.8E-48 367.8 25.9 226 34-267 277-517 (539)
200 PRK14271 phosphate ABC transpo 100.0 6.1E-43 1.3E-47 344.0 29.2 219 36-268 20-250 (276)
201 PRK10419 nikE nickel transport 100.0 4.8E-43 1E-47 343.4 28.2 222 37-267 3-239 (268)
202 PRK14254 phosphate ABC transpo 100.0 9.1E-43 2E-47 344.2 30.1 217 35-267 37-267 (285)
203 cd03252 ABCC_Hemolysin The ABC 100.0 7.4E-44 1.6E-48 342.5 21.6 212 38-268 1-224 (237)
204 PRK10261 glutathione transport 100.0 2.5E-43 5.4E-48 382.6 28.0 222 36-267 11-256 (623)
205 PRK10261 glutathione transport 100.0 4.4E-43 9.5E-48 380.7 29.9 224 36-268 312-552 (623)
206 PRK14265 phosphate ABC transpo 100.0 7.2E-43 1.6E-47 343.1 28.2 218 35-268 18-257 (274)
207 PRK10247 putative ABC transpor 100.0 3E-43 6.5E-48 336.1 24.3 209 36-263 6-221 (225)
208 CHL00131 ycf16 sulfate ABC tra 100.0 1.1E-42 2.4E-47 337.4 28.5 218 37-267 7-239 (252)
209 TIGR03269 met_CoM_red_A2 methy 100.0 3.9E-43 8.5E-48 374.2 27.7 218 38-270 1-259 (520)
210 COG4598 HisP ABC-type histidin 100.0 1.9E-44 4E-49 321.7 14.3 216 37-267 6-239 (256)
211 PRK14266 phosphate ABC transpo 100.0 1.2E-42 2.5E-47 336.9 28.0 218 36-267 2-232 (250)
212 PRK14243 phosphate transporter 100.0 7.2E-43 1.6E-47 341.3 26.7 216 37-268 10-247 (264)
213 TIGR02633 xylG D-xylose ABC tr 100.0 4E-43 8.6E-48 372.5 27.0 218 38-266 2-227 (500)
214 cd03251 ABCC_MsbA MsbA is an e 100.0 1.5E-43 3.3E-48 339.6 21.5 212 38-268 1-224 (234)
215 PRK10982 galactose/methyl gala 100.0 3.3E-43 7.2E-48 372.3 26.0 215 40-267 1-221 (491)
216 PRK11288 araG L-arabinose tran 100.0 5.1E-43 1.1E-47 371.8 27.3 215 37-264 4-224 (501)
217 PRK03695 vitamin B12-transport 100.0 4.6E-43 1E-47 339.7 24.3 198 58-267 11-220 (248)
218 PRK13543 cytochrome c biogenes 100.0 7.3E-43 1.6E-47 330.9 25.2 204 33-255 7-212 (214)
219 PRK15056 manganese/iron transp 100.0 8.1E-43 1.8E-47 342.4 26.3 218 37-267 6-228 (272)
220 PRK14263 phosphate ABC transpo 100.0 1.9E-42 4.1E-47 337.9 28.6 218 34-267 5-243 (261)
221 TIGR03269 met_CoM_red_A2 methy 100.0 7.1E-43 1.5E-47 372.3 27.7 222 36-268 278-516 (520)
222 PRK14246 phosphate ABC transpo 100.0 1.2E-42 2.6E-47 338.5 26.5 216 37-268 10-240 (257)
223 PRK15134 microcin C ABC transp 100.0 1.4E-42 2.9E-47 370.8 28.8 224 37-267 5-244 (529)
224 cd03254 ABCC_Glucan_exporter_l 100.0 2.9E-43 6.3E-48 336.6 21.1 212 37-268 2-225 (229)
225 PRK13538 cytochrome c biogenes 100.0 9.1E-43 2E-47 327.8 23.8 197 38-253 2-202 (204)
226 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.3E-42 2.9E-47 331.5 25.3 202 38-262 23-224 (224)
227 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.8E-43 6.2E-48 338.7 20.6 214 38-269 1-226 (238)
228 PRK13546 teichoic acids export 100.0 5.8E-42 1.3E-46 334.7 30.0 216 36-269 3-232 (264)
229 PRK15134 microcin C ABC transp 100.0 1.1E-42 2.3E-47 371.6 26.8 223 36-267 274-513 (529)
230 PRK09544 znuC high-affinity zi 100.0 1.8E-42 4E-47 336.1 26.0 202 37-267 4-207 (251)
231 PRK14257 phosphate ABC transpo 100.0 3.5E-42 7.5E-47 346.1 28.7 221 35-268 78-312 (329)
232 TIGR01257 rim_protein retinal- 100.0 1.3E-42 2.8E-47 406.0 29.2 223 36-272 1936-2162(2272)
233 cd03213 ABCG_EPDR ABCG transpo 100.0 2.2E-42 4.7E-47 323.0 24.8 188 36-262 2-194 (194)
234 COG4604 CeuD ABC-type enteroch 100.0 4.6E-44 9.9E-49 323.6 12.6 219 37-268 1-224 (252)
235 cd03245 ABCC_bacteriocin_expor 100.0 8.8E-43 1.9E-47 331.3 21.9 202 38-262 3-220 (220)
236 PRK14252 phosphate ABC transpo 100.0 7.2E-42 1.6E-46 334.4 28.4 217 36-267 15-247 (265)
237 cd03232 ABC_PDR_domain2 The pl 100.0 3.1E-42 6.8E-47 321.3 24.5 188 37-262 3-192 (192)
238 PRK09580 sufC cysteine desulfu 100.0 6.3E-42 1.4E-46 331.2 27.4 217 38-267 2-233 (248)
239 PRK14264 phosphate ABC transpo 100.0 8E-42 1.7E-46 340.6 28.8 222 34-267 42-287 (305)
240 cd03231 ABC_CcmA_heme_exporter 100.0 1.9E-42 4E-47 325.1 22.9 194 38-253 1-198 (201)
241 COG2274 SunT ABC-type bacterio 100.0 2.7E-43 5.8E-48 381.9 18.4 215 36-269 470-696 (709)
242 cd03253 ABCC_ATM1_transporter 100.0 1.4E-42 3.1E-47 333.2 21.4 211 38-268 1-223 (236)
243 PRK13539 cytochrome c biogenes 100.0 4E-42 8.6E-47 324.3 23.6 198 36-255 1-200 (207)
244 TIGR02324 CP_lyasePhnL phospho 100.0 6.3E-42 1.4E-46 326.4 25.2 206 38-254 2-223 (224)
245 TIGR01257 rim_protein retinal- 100.0 5.5E-42 1.2E-46 400.8 30.0 222 35-271 926-1151(2272)
246 PRK11174 cysteine/glutathione 100.0 1.6E-42 3.5E-47 374.7 23.3 211 37-268 349-571 (588)
247 PRK13549 xylose transporter AT 100.0 2.6E-42 5.6E-47 366.7 24.2 223 36-267 258-492 (506)
248 cd03289 ABCC_CFTR2 The CFTR su 100.0 5.2E-42 1.1E-46 336.7 23.9 208 37-269 2-225 (275)
249 TIGR01189 ccmA heme ABC export 100.0 5.9E-42 1.3E-46 320.8 23.2 193 38-252 1-197 (198)
250 PRK09700 D-allose transporter 100.0 3.9E-42 8.4E-47 365.8 24.3 214 36-264 264-493 (510)
251 cd03244 ABCC_MRP_domain2 Domai 100.0 4.6E-42 1E-46 326.5 22.1 202 38-263 3-220 (221)
252 COG1129 MglA ABC-type sugar tr 100.0 7.9E-42 1.7E-46 352.2 25.5 216 35-263 6-228 (500)
253 COG4988 CydD ABC-type transpor 100.0 4E-42 8.8E-47 355.4 23.0 212 33-268 316-542 (559)
254 TIGR01166 cbiO cobalt transpor 100.0 6.1E-42 1.3E-46 318.5 21.5 178 54-240 3-188 (190)
255 cd03230 ABC_DR_subfamily_A Thi 100.0 9.2E-42 2E-46 313.0 22.4 169 38-258 1-173 (173)
256 PRK10938 putative molybdenum t 100.0 5.6E-42 1.2E-46 362.9 24.0 207 37-267 3-222 (490)
257 COG4148 ModC ABC-type molybdat 100.0 1.1E-42 2.4E-47 329.4 16.1 194 60-268 15-217 (352)
258 cd03248 ABCC_TAP TAP, the Tran 100.0 3.4E-42 7.4E-47 328.6 19.1 208 35-258 9-226 (226)
259 COG4161 ArtP ABC-type arginine 100.0 4.6E-42 1E-46 301.6 17.9 215 36-265 1-226 (242)
260 PRK13545 tagH teichoic acids e 100.0 5E-41 1.1E-45 349.7 28.8 212 37-269 21-232 (549)
261 cd03229 ABC_Class3 This class 100.0 1.7E-41 3.8E-46 312.5 22.3 171 38-257 1-178 (178)
262 PRK13540 cytochrome c biogenes 100.0 1.8E-41 3.9E-46 318.1 22.6 192 38-251 2-197 (200)
263 TIGR02633 xylG D-xylose ABC tr 100.0 1.5E-41 3.2E-46 360.5 24.2 221 36-265 256-488 (500)
264 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.9E-41 6.2E-46 316.8 23.4 186 38-271 1-195 (200)
265 PRK10762 D-ribose transporter 100.0 1.5E-41 3.2E-46 360.5 23.9 214 36-267 256-482 (501)
266 TIGR03771 anch_rpt_ABC anchore 100.0 2.5E-41 5.4E-46 322.5 22.7 196 64-267 1-199 (223)
267 PRK11176 lipid transporter ATP 100.0 1.9E-41 4.2E-46 365.8 24.3 210 37-268 341-566 (582)
268 PRK10790 putative multidrug tr 100.0 3.4E-41 7.3E-46 364.7 25.6 207 37-268 340-562 (592)
269 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.5E-41 3.3E-46 373.1 23.1 206 37-268 451-672 (686)
270 PRK11288 araG L-arabinose tran 100.0 2.2E-41 4.8E-46 359.2 23.3 214 36-266 256-482 (501)
271 PRK15439 autoinducer 2 ABC tra 100.0 2.7E-41 5.7E-46 359.2 23.5 213 36-266 267-489 (510)
272 cd03215 ABC_Carb_Monos_II This 100.0 5.7E-41 1.2E-45 310.2 22.4 170 37-258 4-182 (182)
273 cd03288 ABCC_SUR2 The SUR doma 100.0 4.3E-41 9.3E-46 327.5 21.9 212 37-268 19-242 (257)
274 cd03369 ABCC_NFT1 Domain 2 of 100.0 9.8E-41 2.1E-45 314.5 23.5 197 37-264 6-207 (207)
275 cd03214 ABC_Iron-Siderophores_ 100.0 3.3E-41 7.1E-46 311.3 19.7 175 39-262 1-180 (180)
276 cd03247 ABCC_cytochrome_bd The 100.0 5.6E-41 1.2E-45 309.1 21.0 174 38-262 1-178 (178)
277 TIGR01187 potA spermidine/putr 100.0 9.2E-41 2E-45 335.7 24.4 186 74-268 1-189 (325)
278 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.8E-41 6E-46 372.5 21.5 209 36-269 476-700 (710)
279 KOG0057 Mitochondrial Fe/S clu 100.0 3.5E-41 7.5E-46 344.0 20.3 210 35-269 349-574 (591)
280 KOG0058 Peptide exporter, ABC 100.0 1.9E-41 4E-46 356.7 18.5 214 35-268 463-690 (716)
281 PRK11160 cysteine/glutathione 100.0 7.7E-41 1.7E-45 360.4 23.9 210 36-268 337-561 (574)
282 TIGR01842 type_I_sec_PrtD type 100.0 6.1E-41 1.3E-45 359.2 22.8 215 36-268 315-541 (544)
283 COG4586 ABC-type uncharacteriz 100.0 1.8E-41 3.8E-46 320.5 16.3 209 55-272 36-249 (325)
284 COG4987 CydC ABC-type transpor 100.0 1.3E-41 2.8E-46 347.0 16.3 209 37-268 336-560 (573)
285 COG4172 ABC-type uncharacteriz 100.0 2.7E-40 5.9E-45 326.2 25.0 230 31-268 270-515 (534)
286 cd03246 ABCC_Protease_Secretio 100.0 1.2E-40 2.7E-45 305.5 21.1 168 38-258 1-173 (173)
287 COG1132 MdlB ABC-type multidru 100.0 4.8E-41 1E-45 361.8 21.1 214 36-269 327-552 (567)
288 TIGR03375 type_I_sec_LssB type 100.0 6.2E-41 1.3E-45 368.8 22.4 210 37-269 463-688 (694)
289 KOG0055 Multidrug/pheromone ex 100.0 3E-40 6.5E-45 364.8 27.0 215 35-269 348-576 (1228)
290 COG3845 ABC-type uncharacteriz 100.0 1.8E-40 3.8E-45 336.3 23.0 214 37-263 4-223 (501)
291 PRK13657 cyclic beta-1,2-gluca 100.0 1.4E-40 3E-45 359.7 23.7 208 37-268 334-557 (588)
292 TIGR01193 bacteriocin_ABC ABC- 100.0 9.8E-41 2.1E-45 368.0 22.2 209 37-269 473-697 (708)
293 cd03250 ABCC_MRP_domain1 Domai 100.0 2.7E-40 5.8E-45 310.9 21.4 195 38-257 1-204 (204)
294 PRK15177 Vi polysaccharide exp 100.0 3E-40 6.4E-45 313.0 21.8 195 57-273 1-196 (213)
295 PRK15064 ABC transporter ATP-b 100.0 7.9E-40 1.7E-44 349.6 26.4 209 38-268 2-241 (530)
296 TIGR00958 3a01208 Conjugate Tr 100.0 1.7E-40 3.8E-45 365.7 21.8 210 36-269 477-702 (711)
297 COG0396 sufC Cysteine desulfur 100.0 1.7E-39 3.7E-44 301.0 24.8 230 36-278 2-242 (251)
298 TIGR02203 MsbA_lipidA lipid A 100.0 1.7E-40 3.7E-45 357.6 20.8 210 37-268 330-555 (571)
299 PRK11819 putative ABC transpor 100.0 7.3E-40 1.6E-44 351.6 25.3 209 36-267 5-248 (556)
300 PRK10535 macrolide transporter 100.0 2E-39 4.4E-44 353.4 28.9 219 37-268 4-231 (648)
301 TIGR02204 MsbA_rel ABC transpo 100.0 3.7E-40 8E-45 355.4 22.6 210 37-268 337-562 (576)
302 PRK13541 cytochrome c biogenes 100.0 8.6E-40 1.9E-44 305.5 22.1 190 38-250 2-192 (195)
303 TIGR01846 type_I_sec_HlyB type 100.0 2.6E-40 5.7E-45 363.8 21.8 214 36-268 454-679 (694)
304 cd03290 ABCC_SUR1_N The SUR do 100.0 1E-39 2.2E-44 310.0 22.6 195 39-257 2-218 (218)
305 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.6E-39 3.4E-44 314.5 24.2 190 57-266 8-204 (246)
306 TIGR01192 chvA glucan exporter 100.0 5.8E-40 1.3E-44 354.3 23.3 212 37-268 334-557 (585)
307 PRK10938 putative molybdenum t 100.0 6.8E-40 1.5E-44 347.0 23.0 215 36-262 259-485 (490)
308 cd03228 ABCC_MRP_Like The MRP 100.0 8.5E-40 1.8E-44 299.4 19.8 166 38-257 1-171 (171)
309 PRK10789 putative multidrug tr 100.0 4.8E-40 1.1E-44 354.0 21.0 209 37-268 313-537 (569)
310 PRK15064 ABC transporter ATP-b 100.0 2E-39 4.3E-44 346.5 25.4 203 36-268 318-524 (530)
311 PRK10982 galactose/methyl gala 100.0 1.4E-39 2.9E-44 344.7 23.8 214 36-264 249-475 (491)
312 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.8E-39 1.3E-43 316.2 26.2 199 34-268 36-246 (282)
313 cd03216 ABC_Carb_Monos_I This 100.0 3E-39 6.4E-44 293.7 22.2 156 38-260 1-162 (163)
314 cd03223 ABCD_peroxisomal_ALDP 100.0 2.2E-39 4.7E-44 295.4 21.2 163 38-256 1-163 (166)
315 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.1E-39 4.6E-44 347.8 24.6 211 36-268 3-247 (552)
316 COG1119 ModF ABC-type molybden 100.0 6.8E-40 1.5E-44 307.0 17.6 218 35-263 29-256 (257)
317 COG4619 ABC-type uncharacteriz 100.0 1.7E-40 3.8E-45 293.3 10.4 193 54-258 14-212 (223)
318 COG4608 AppF ABC-type oligopep 100.0 6.4E-39 1.4E-43 306.1 21.4 191 36-268 3-198 (268)
319 PRK11819 putative ABC transpor 100.0 1.4E-38 3E-43 341.7 26.4 204 35-265 322-529 (556)
320 COG4172 ABC-type uncharacteriz 100.0 1E-38 2.2E-43 315.1 22.4 225 37-268 6-246 (534)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2E-38 4.4E-43 340.2 26.1 202 36-264 321-526 (552)
322 PRK13409 putative ATPase RIL; 100.0 2.6E-38 5.6E-43 340.1 25.7 199 35-263 338-536 (590)
323 COG4674 Uncharacterized ABC-ty 100.0 5.3E-39 1.2E-43 290.3 16.5 219 36-268 4-234 (249)
324 PTZ00265 multidrug resistance 100.0 5.5E-39 1.2E-43 374.0 20.7 215 37-268 1165-1451(1466)
325 PLN03130 ABC transporter C fam 100.0 3.1E-38 6.8E-43 370.7 25.8 209 36-268 1236-1460(1622)
326 PLN03232 ABC transporter C fam 100.0 3.1E-38 6.8E-43 370.0 25.4 208 37-268 1234-1457(1495)
327 COG1134 TagH ABC-type polysacc 100.0 1.7E-37 3.7E-42 291.2 24.6 219 37-273 3-240 (249)
328 TIGR02857 CydD thiol reductant 100.0 1.8E-38 3.8E-43 339.1 20.5 194 37-253 320-529 (529)
329 PRK10522 multidrug transporter 100.0 4.4E-38 9.5E-43 337.4 23.5 200 37-262 322-531 (547)
330 TIGR02868 CydC thiol reductant 100.0 8.1E-39 1.8E-43 341.7 17.7 182 36-239 333-529 (529)
331 COG4618 ArpD ABC-type protease 100.0 2E-38 4.4E-43 321.1 19.5 223 28-271 326-562 (580)
332 COG1101 PhnK ABC-type uncharac 100.0 2.1E-38 4.7E-43 290.5 17.3 218 38-262 2-231 (263)
333 PRK10636 putative ABC transpor 100.0 1.3E-37 2.9E-42 338.4 26.1 203 35-268 310-516 (638)
334 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.5E-38 2E-42 335.2 23.7 203 36-261 336-551 (555)
335 PRK11147 ABC transporter ATPas 100.0 1.7E-37 3.7E-42 337.8 25.2 205 35-266 317-525 (635)
336 cd03236 ABC_RNaseL_inhibitor_d 100.0 8.2E-38 1.8E-42 304.0 19.4 198 42-262 5-220 (255)
337 TIGR00957 MRP_assoc_pro multi 100.0 1.7E-37 3.7E-42 364.3 25.5 210 36-269 1283-1508(1522)
338 PTZ00243 ABC transporter; Prov 100.0 2.2E-37 4.7E-42 363.1 24.9 209 36-268 1307-1532(1560)
339 KOG0059 Lipid exporter ABCA1 a 100.0 8.3E-38 1.8E-42 350.1 20.4 221 36-272 563-790 (885)
340 PRK10636 putative ABC transpor 100.0 4.7E-37 1E-41 334.2 24.4 207 37-266 1-233 (638)
341 KOG0055 Multidrug/pheromone ex 100.0 1.3E-37 2.8E-42 343.9 19.7 216 36-269 986-1213(1228)
342 COG4136 ABC-type uncharacteriz 100.0 1.5E-37 3.2E-42 270.2 15.4 202 37-252 2-206 (213)
343 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 8.3E-37 1.8E-41 272.1 20.2 144 38-257 1-144 (144)
344 PTZ00265 multidrug resistance 100.0 4.8E-37 1E-41 357.8 23.0 209 37-256 382-655 (1466)
345 PLN03073 ABC transporter F fam 100.0 3.1E-36 6.6E-41 329.8 27.5 205 36-268 507-713 (718)
346 cd03238 ABC_UvrA The excision 100.0 9.4E-37 2E-41 280.1 19.6 159 55-260 7-168 (176)
347 COG4167 SapF ABC-type antimicr 100.0 5.3E-37 1.1E-41 274.7 17.4 224 37-268 4-238 (267)
348 TIGR01271 CFTR_protein cystic 100.0 1.1E-36 2.4E-41 356.6 25.1 208 36-268 1216-1439(1490)
349 cd03222 ABC_RNaseL_inhibitor T 100.0 1.7E-36 3.6E-41 278.7 20.0 154 41-265 4-159 (177)
350 PRK11147 ABC transporter ATPas 100.0 2.7E-36 5.8E-41 328.5 24.6 206 37-266 3-240 (635)
351 TIGR00954 3a01203 Peroxysomal 100.0 3E-36 6.6E-41 328.9 22.3 193 37-254 451-652 (659)
352 KOG0056 Heavy metal exporter H 100.0 1.2E-36 2.7E-41 305.4 13.4 215 34-268 534-760 (790)
353 PLN03130 ABC transporter C fam 100.0 3E-35 6.4E-40 345.7 24.1 201 37-268 614-827 (1622)
354 PLN03232 ABC transporter C fam 100.0 5.3E-35 1.1E-39 342.9 23.9 202 37-268 614-827 (1495)
355 TIGR00957 MRP_assoc_pro multi 100.0 1.3E-34 2.8E-39 340.1 26.5 206 37-268 636-849 (1522)
356 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.5E-34 3.3E-39 260.7 20.8 151 40-257 2-157 (157)
357 PRK13409 putative ATPase RIL; 100.0 3.3E-35 7.2E-40 316.1 18.9 180 56-256 87-287 (590)
358 COG0488 Uup ATPase components 100.0 5.6E-35 1.2E-39 307.9 19.4 205 37-264 3-235 (530)
359 COG4133 CcmA ABC-type transpor 100.0 2.9E-35 6.3E-40 265.1 14.1 187 37-241 2-192 (209)
360 COG4107 PhnK ABC-type phosphon 100.0 3.1E-35 6.8E-40 261.4 13.8 213 37-268 6-240 (258)
361 TIGR01271 CFTR_protein cystic 100.0 2.8E-34 6.1E-39 336.4 22.8 189 56-268 439-635 (1490)
362 PLN03073 ABC transporter F fam 100.0 6E-34 1.3E-38 311.8 20.0 218 35-266 175-428 (718)
363 COG5265 ATM1 ABC-type transpor 100.0 2.5E-34 5.3E-39 285.7 13.6 211 37-269 262-486 (497)
364 PTZ00243 ABC transporter; Prov 100.0 1.8E-33 4E-38 330.0 22.5 191 55-268 672-869 (1560)
365 cd03270 ABC_UvrA_I The excisio 100.0 6.2E-33 1.3E-37 265.2 20.3 190 54-262 6-226 (226)
366 COG4778 PhnL ABC-type phosphon 100.0 2.2E-33 4.7E-38 248.8 13.8 209 37-255 4-227 (235)
367 KOG0054 Multidrug resistance-a 100.0 4.5E-32 9.7E-37 306.2 23.1 206 33-268 514-730 (1381)
368 cd03271 ABC_UvrA_II The excisi 100.0 1.1E-31 2.4E-36 260.8 19.8 195 56-264 8-261 (261)
369 COG0488 Uup ATPase components 100.0 1.8E-31 3.9E-36 281.4 21.6 203 34-267 318-523 (530)
370 KOG0054 Multidrug resistance-a 100.0 1.6E-31 3.4E-36 301.8 22.2 239 6-268 1105-1361(1381)
371 PF00005 ABC_tran: ABC transpo 100.0 2.7E-32 5.8E-37 239.8 12.5 128 59-205 1-137 (137)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 3.1E-31 6.8E-36 248.3 13.2 165 60-255 14-190 (197)
373 COG4138 BtuD ABC-type cobalami 100.0 4.5E-32 9.8E-37 241.4 6.5 206 37-268 3-220 (248)
374 COG1129 MglA ABC-type sugar tr 100.0 5.8E-30 1.3E-34 264.4 22.4 214 34-264 260-485 (500)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.6E-29 3.4E-34 243.8 14.7 185 54-254 13-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 100.0 8.8E-31 1.9E-35 247.9 3.1 178 54-255 15-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 100.0 5.7E-29 1.2E-33 241.5 10.7 177 69-254 25-242 (251)
378 PRK00635 excinuclease ABC subu 100.0 2.2E-27 4.8E-32 274.6 22.3 137 126-268 759-905 (1809)
379 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.5E-27 3.2E-32 226.1 15.4 191 37-257 5-210 (213)
380 COG3845 ABC-type uncharacteriz 99.9 9.6E-27 2.1E-31 236.5 21.5 221 34-266 254-489 (501)
381 cd03240 ABC_Rad50 The catalyti 99.9 1.1E-27 2.4E-32 225.4 13.5 165 61-255 15-197 (204)
382 COG4178 ABC-type uncharacteriz 99.9 2.6E-27 5.6E-32 249.2 17.5 192 35-254 390-587 (604)
383 PRK00349 uvrA excinuclease ABC 99.9 1.3E-26 2.8E-31 258.3 22.3 126 129-268 791-926 (943)
384 TIGR00630 uvra excinuclease AB 99.9 1.7E-25 3.6E-30 249.0 22.9 125 129-267 789-923 (924)
385 KOG0927 Predicted transporter 99.9 2.5E-26 5.5E-31 234.6 14.4 213 36-266 74-306 (614)
386 COG4615 PvdE ABC-type sideroph 99.9 9.3E-27 2E-31 229.8 10.0 200 36-262 321-530 (546)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2E-25 4.3E-30 209.2 16.1 169 58-257 11-192 (198)
388 COG4170 SapD ABC-type antimicr 99.9 5.3E-26 1.2E-30 208.1 11.7 226 38-268 4-247 (330)
389 KOG0927 Predicted transporter 99.9 4.2E-26 9.1E-31 233.0 10.3 201 35-264 387-591 (614)
390 COG1245 Predicted ATPase, RNas 99.9 9.7E-25 2.1E-29 219.0 17.4 191 35-254 340-530 (591)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 6.6E-25 1.4E-29 212.6 8.7 172 70-255 23-233 (247)
392 KOG0062 ATPase component of AB 99.9 2.5E-24 5.5E-29 218.9 11.4 200 35-265 78-281 (582)
393 KOG0060 Long-chain acyl-CoA tr 99.9 8.3E-23 1.8E-27 210.4 18.1 199 36-255 432-641 (659)
394 KOG2355 Predicted ABC-type tra 99.9 1.9E-22 4.1E-27 184.3 15.3 211 36-269 12-237 (291)
395 KOG0066 eIF2-interacting prote 99.9 8.2E-23 1.8E-27 203.8 13.4 192 34-256 583-777 (807)
396 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.1E-22 4.6E-27 190.8 15.0 171 59-257 14-211 (213)
397 KOG0062 ATPase component of AB 99.9 1.4E-22 3.1E-27 206.2 14.5 199 35-261 360-560 (582)
398 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.2E-22 2.7E-27 190.5 11.5 147 58-262 16-172 (200)
399 COG1245 Predicted ATPase, RNas 99.9 4.8E-22 1E-26 199.7 10.8 169 65-255 96-288 (591)
400 cd03239 ABC_SMC_head The struc 99.8 2.3E-20 5E-25 172.0 14.9 74 177-255 95-172 (178)
401 KOG0064 Peroxisomal long-chain 99.8 1.8E-20 3.9E-25 190.9 12.7 189 37-253 481-681 (728)
402 cd03283 ABC_MutS-like MutS-lik 99.8 1E-20 2.2E-25 177.4 10.0 147 56-253 14-163 (199)
403 cd03285 ABC_MSH2_euk MutS2 hom 99.8 6.6E-21 1.4E-25 181.7 8.1 154 55-263 16-175 (222)
404 COG2401 ABC-type ATPase fused 99.8 4.9E-20 1.1E-24 183.4 13.7 186 54-259 394-588 (593)
405 cd03241 ABC_RecN RecN ATPase i 99.8 1.3E-19 2.8E-24 178.5 15.5 77 175-257 169-249 (276)
406 cd03227 ABC_Class2 ABC-type Cl 99.8 1.5E-19 3.3E-24 164.0 12.6 141 59-255 11-155 (162)
407 PRK00635 excinuclease ABC subu 99.8 7.9E-19 1.7E-23 204.2 21.5 126 129-268 1660-1795(1809)
408 KOG0066 eIF2-interacting prote 99.8 1.4E-20 3E-25 188.0 3.5 214 33-263 260-493 (807)
409 COG0178 UvrA Excinuclease ATPa 99.8 1.5E-18 3.3E-23 184.9 18.9 127 129-269 783-919 (935)
410 cd03243 ABC_MutS_homologs The 99.8 1.3E-19 2.7E-24 170.4 7.1 156 60-266 20-176 (202)
411 PRK00349 uvrA excinuclease ABC 99.8 1.6E-18 3.6E-23 193.7 15.5 136 127-268 434-584 (943)
412 TIGR00630 uvra excinuclease AB 99.8 2.2E-18 4.8E-23 192.3 15.5 136 127-268 432-582 (924)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.7 3E-18 6.5E-23 161.3 8.6 136 55-239 15-151 (204)
414 cd03242 ABC_RecF RecF is a rec 99.7 8.7E-17 1.9E-21 157.9 17.6 76 175-258 182-269 (270)
415 cd03284 ABC_MutS1 MutS1 homolo 99.7 3.6E-17 7.8E-22 155.4 9.6 159 56-267 18-179 (216)
416 TIGR02858 spore_III_AA stage I 99.6 5.6E-16 1.2E-20 151.5 10.3 137 70-266 112-266 (270)
417 KOG0063 RNAse L inhibitor, ABC 99.6 1.1E-15 2.4E-20 153.0 12.1 180 54-254 347-531 (592)
418 smart00534 MUTSac ATPase domai 99.6 1.2E-16 2.7E-21 148.1 3.9 93 164-261 49-142 (185)
419 PF02463 SMC_N: RecF/RecN/SMC 99.6 1.1E-14 2.3E-19 138.4 9.9 88 155-254 121-212 (220)
420 PRK00064 recF recombination pr 99.6 4.3E-13 9.4E-18 136.9 21.4 77 175-258 272-359 (361)
421 TIGR01069 mutS2 MutS2 family p 99.5 9.5E-15 2.1E-19 161.5 8.8 129 61-239 313-445 (771)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.5 7.8E-14 1.7E-18 132.2 13.1 131 58-239 18-154 (213)
423 cd00820 PEPCK_HprK Phosphoenol 99.5 1.2E-13 2.6E-18 115.9 6.7 72 56-139 2-78 (107)
424 cd03287 ABC_MSH3_euk MutS3 hom 99.4 1.3E-12 2.8E-17 124.6 14.1 139 56-247 18-160 (222)
425 KOG0063 RNAse L inhibitor, ABC 99.4 4.3E-13 9.4E-18 134.6 9.3 174 66-255 97-288 (592)
426 PTZ00132 GTP-binding nuclear p 99.4 3.5E-13 7.7E-18 127.5 7.7 46 179-224 155-205 (215)
427 PRK07721 fliI flagellum-specif 99.4 5.5E-12 1.2E-16 131.1 15.4 175 55-266 145-340 (438)
428 PRK00409 recombination and DNA 99.4 3.5E-13 7.5E-18 149.5 6.8 150 62-261 319-470 (782)
429 TIGR00634 recN DNA repair prot 99.4 1.3E-12 2.9E-17 140.9 9.6 77 175-257 439-519 (563)
430 TIGR00618 sbcc exonuclease Sbc 99.4 2.4E-12 5.2E-17 148.1 11.3 88 165-256 939-1036(1042)
431 PHA02562 46 endonuclease subun 99.3 2.3E-12 4.9E-17 139.0 9.3 79 173-258 465-555 (562)
432 cd03286 ABC_MSH6_euk MutS6 hom 99.3 2.3E-12 4.9E-17 122.5 8.1 137 55-239 16-153 (218)
433 PRK10869 recombination and rep 99.3 3.4E-12 7.4E-17 136.9 10.5 76 176-257 430-509 (553)
434 cd01128 rho_factor Transcripti 99.3 9.9E-12 2.2E-16 120.3 10.3 178 64-258 11-211 (249)
435 cd01124 KaiC KaiC is a circadi 99.3 2.6E-11 5.7E-16 111.6 12.7 145 72-254 2-163 (187)
436 PRK08533 flagellar accessory p 99.3 2.4E-11 5.3E-16 116.6 12.4 150 65-254 20-184 (230)
437 PF13304 AAA_21: AAA domain; P 99.3 3.6E-12 7.9E-17 120.4 6.3 62 175-239 235-299 (303)
438 COG0178 UvrA Excinuclease ATPa 99.2 1E-10 2.2E-15 125.8 15.2 137 127-269 426-577 (935)
439 PRK13695 putative NTPase; Prov 99.2 4.8E-12 1E-16 116.0 4.2 83 171-262 73-157 (174)
440 PRK03918 chromosome segregatio 99.2 3.1E-11 6.7E-16 136.9 9.5 80 171-255 783-868 (880)
441 PRK01156 chromosome segregatio 99.2 1.2E-10 2.7E-15 132.3 13.4 81 172-254 797-883 (895)
442 TIGR02788 VirB11 P-type DNA tr 99.2 8.4E-11 1.8E-15 117.7 9.8 141 62-268 137-280 (308)
443 PRK10246 exonuclease subunit S 99.2 1.2E-10 2.5E-15 134.0 11.1 82 170-255 943-1032(1047)
444 PRK13830 conjugal transfer pro 99.1 7.8E-10 1.7E-14 124.0 16.9 69 192-264 650-728 (818)
445 TIGR00606 rad50 rad50. This fa 99.1 2.7E-10 5.9E-15 133.9 10.2 72 173-247 1196-1277(1311)
446 cd01120 RecA-like_NTPases RecA 99.1 2.2E-10 4.7E-15 102.0 7.2 63 176-241 67-139 (165)
447 PRK06793 fliI flagellum-specif 99.1 4.7E-10 1E-14 116.0 10.6 168 38-264 131-306 (432)
448 TIGR02168 SMC_prok_B chromosom 99.1 1.9E-10 4.2E-15 133.6 7.9 80 169-254 1082-1165(1179)
449 COG3910 Predicted ATPase [Gene 99.0 4.9E-09 1.1E-13 95.5 12.9 79 172-256 125-204 (233)
450 PRK06067 flagellar accessory p 99.0 1.2E-08 2.6E-13 98.0 15.6 164 56-255 11-187 (234)
451 PRK06995 flhF flagellar biosyn 99.0 1.7E-09 3.6E-14 113.5 9.5 151 57-237 244-400 (484)
452 cd01131 PilT Pilus retraction 99.0 3.1E-09 6.7E-14 99.6 10.3 119 71-254 3-122 (198)
453 TIGR02169 SMC_prok_A chromosom 99.0 1.1E-09 2.3E-14 127.5 8.5 79 171-255 1069-1151(1164)
454 cd01125 repA Hexameric Replica 99.0 4.5E-09 9.7E-14 101.3 11.4 136 69-239 1-159 (239)
455 TIGR03238 dnd_assoc_3 dnd syst 98.9 8.2E-10 1.8E-14 114.4 4.7 50 56-110 19-69 (504)
456 PRK02224 chromosome segregatio 98.9 3.4E-09 7.5E-14 120.3 9.6 78 174-255 779-868 (880)
457 smart00382 AAA ATPases associa 98.8 1.7E-07 3.8E-12 80.0 14.9 119 68-237 1-124 (148)
458 TIGR02655 circ_KaiC circadian 98.8 1.9E-09 4.2E-14 114.3 3.1 166 57-254 8-190 (484)
459 cd02023 UMPK Uridine monophosp 98.8 5.9E-09 1.3E-13 97.4 5.2 113 71-209 1-113 (198)
460 PRK07196 fliI flagellum-specif 98.8 8.7E-09 1.9E-13 106.8 5.8 175 55-261 142-333 (434)
461 TIGR01026 fliI_yscN ATPase Fli 98.7 1.6E-07 3.4E-12 98.1 14.6 174 55-267 150-346 (440)
462 cd01130 VirB11-like_ATPase Typ 98.7 2.9E-08 6.2E-13 92.1 6.1 82 58-142 14-99 (186)
463 PRK05399 DNA mismatch repair p 98.7 4.2E-08 9.2E-13 110.5 8.6 139 56-249 595-738 (854)
464 TIGR01420 pilT_fam pilus retra 98.7 1.2E-07 2.6E-12 96.4 10.6 124 66-254 119-243 (343)
465 PRK14079 recF recombination pr 98.6 5.5E-08 1.2E-12 99.1 7.7 77 175-262 262-347 (349)
466 TIGR00611 recf recF protein. A 98.6 5.8E-08 1.3E-12 99.4 7.2 60 175-240 274-342 (365)
467 PRK13891 conjugal transfer pro 98.6 7.7E-07 1.7E-11 100.6 16.7 69 187-259 680-751 (852)
468 TIGR03881 KaiC_arch_4 KaiC dom 98.6 4.5E-08 9.7E-13 93.5 5.5 34 57-90 7-41 (229)
469 COG0419 SbcC ATPase involved i 98.6 1.3E-07 2.8E-12 107.8 10.1 80 172-256 811-898 (908)
470 PRK06002 fliI flagellum-specif 98.6 1.8E-07 3.9E-12 97.2 8.8 189 33-261 135-343 (450)
471 cd01122 GP4d_helicase GP4d_hel 98.6 1.9E-06 4.2E-11 84.3 15.5 157 55-238 16-190 (271)
472 TIGR02680 conserved hypothetic 98.5 2.3E-07 4.9E-12 109.3 7.5 64 170-239 1241-1316(1353)
473 PLN03210 Resistant to P. syrin 98.4 4.9E-07 1.1E-11 105.6 9.2 166 61-276 199-365 (1153)
474 PRK09825 idnK D-gluconate kina 98.4 1.7E-07 3.6E-12 86.3 3.0 64 68-138 2-69 (176)
475 PRK06315 type III secretion sy 98.4 8.9E-07 1.9E-11 92.1 8.3 170 55-264 151-345 (442)
476 cd01876 YihA_EngB The YihA (En 98.3 8.5E-07 1.8E-11 78.7 6.3 64 155-222 100-169 (170)
477 PRK13898 type IV secretion sys 98.3 2.3E-05 5E-10 88.3 19.1 48 190-240 638-686 (800)
478 PF13555 AAA_29: P-loop contai 98.3 8.1E-07 1.8E-11 67.1 4.3 37 59-95 12-49 (62)
479 TIGR02903 spore_lon_C ATP-depe 98.3 2.2E-06 4.8E-11 93.5 9.4 113 68-221 174-291 (615)
480 PF13558 SbcCD_C: Putative exo 98.3 1.5E-06 3.2E-11 71.1 6.0 51 171-221 27-90 (90)
481 TIGR00416 sms DNA repair prote 98.3 2.2E-06 4.7E-11 90.2 8.1 63 193-257 169-247 (454)
482 PRK00454 engB GTP-binding prot 98.2 1.4E-05 3E-10 73.8 12.5 65 156-224 126-194 (196)
483 PRK01889 GTPase RsgA; Reviewed 98.2 2E-06 4.3E-11 87.9 6.9 106 59-173 185-292 (356)
484 PF00488 MutS_V: MutS domain V 98.2 4.6E-05 9.9E-10 73.4 15.8 53 192-248 120-173 (235)
485 PRK13873 conjugal transfer ATP 98.2 3.7E-05 8E-10 86.8 17.2 46 192-240 633-679 (811)
486 TIGR00152 dephospho-CoA kinase 98.2 2.3E-06 5.1E-11 79.3 5.4 71 180-255 61-132 (188)
487 PRK08149 ATP synthase SpaL; Va 98.2 2.8E-06 6E-11 88.2 6.4 179 54-262 137-329 (428)
488 cd00009 AAA The AAA+ (ATPases 98.2 1.8E-05 3.8E-10 68.2 10.4 57 182-239 72-130 (151)
489 TIGR02524 dot_icm_DotB Dot/Icm 98.1 4E-06 8.6E-11 85.6 7.1 75 67-141 132-210 (358)
490 cd01121 Sms Sms (bacterial rad 98.1 8.5E-06 1.8E-10 83.6 9.0 62 193-256 157-234 (372)
491 PRK09270 nucleoside triphospha 98.1 2.3E-06 5.1E-11 81.9 4.6 73 67-143 31-108 (229)
492 PF09818 ABC_ATPase: Predicted 98.1 4.6E-05 9.9E-10 78.4 13.8 81 175-258 321-416 (448)
493 TIGR00767 rho transcription te 98.1 7.2E-06 1.6E-10 84.0 7.2 54 36-94 129-193 (415)
494 cd01136 ATPase_flagellum-secre 98.1 5.6E-06 1.2E-10 83.2 6.2 178 55-264 56-249 (326)
495 TIGR00235 udk uridine kinase. 98.0 3.8E-06 8.3E-11 79.1 3.7 28 67-94 4-31 (207)
496 PRK13764 ATPase; Provisional 98.0 4.4E-05 9.6E-10 82.4 12.1 63 191-264 321-400 (602)
497 PLN02796 D-glycerate 3-kinase 98.0 2E-06 4.3E-11 86.6 1.6 55 56-110 79-141 (347)
498 TIGR03880 KaiC_arch_3 KaiC dom 98.0 9E-05 2E-09 70.5 12.9 57 194-254 107-177 (224)
499 PRK09099 type III secretion sy 98.0 8.2E-06 1.8E-10 85.1 6.1 52 54-109 149-200 (441)
500 PRK07594 type III secretion sy 98.0 6.7E-06 1.5E-10 85.5 5.4 64 37-109 129-192 (433)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.8e-72 Score=603.11 Aligned_cols=395 Identities=41% Similarity=0.635 Sum_probs=330.1
Q ss_pred CCCCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 31 NEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 31 ~~~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
+...++.+.|+|++++ ...+....+++|+|||++++|||++||||||||||||||++|+|+...+...+|+|++||++.
T Consensus 19 ~~~~~~~~~~~~~~~~-~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~ 97 (613)
T KOG0061|consen 19 PYLEPVKLSFRNLTLS-SKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR 97 (613)
T ss_pred cccccceeEEEEEEEE-ecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC
Confidence 3456778999999998 332211358899999999999999999999999999999999999976546799999999764
Q ss_pred cc--ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCC-----CCChHHHH
Q 044030 111 AL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR-----RLSGGQKR 183 (449)
Q Consensus 111 ~~--~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~-----~LSgGerq 183 (449)
.. .++.+|||.|+|.++|++||+|++.|++.+++|...+.++++++++++++.+||.+++|+.++ ++||||||
T Consensus 98 ~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErk 177 (613)
T KOG0061|consen 98 DSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERK 177 (613)
T ss_pred chhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhh
Confidence 32 346789999999999999999999999999999888889999999999999999999999995 79999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||.+|++||+||+|||||||||+.++.++++.|+++|++ |+ |||+++|||+.+++++||++++|++|+++|+|+
T Consensus 178 Rvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-gr--tVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 178 RVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GR--TVICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CC--EEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 999999999999999999999999999999999999999976 66 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHCCCCCCCCCCchhHHHHHhhhh-hhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHH-Hhhh
Q 044030 264 ATAANEFFAFNGFPCPTHQNPSDHFLKTINKD-FQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAE-ICKQ 341 (449)
Q Consensus 264 ~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~ 341 (449)
++++.+||+..|++||++.||+||++++++.+ ...... .........+.++..+...+....... +..
T Consensus 255 ~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (613)
T KOG0061|consen 255 PRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELE---------EAVRIAKLINKFSQTDNLKKTLEALEKSLST- 324 (613)
T ss_pred HHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHH---------hHHHHHHHhhhccccchhhhhHHHHhhhccc-
Confidence 99999999999999999999999999988743 100000 001111111112111111111000000 000
Q ss_pred cCCCcccCccCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 044030 342 NYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITF 421 (449)
Q Consensus 342 ~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~ 421 (449)
.........++||.|+++|++|.+++.+|||.+.+.|+++.+++|+++|++||+++++..++++|.|++||.+.++.|
T Consensus 325 --~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f 402 (613)
T KOG0061|consen 325 --SKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTF 402 (613)
T ss_pred --ccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 000111127899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHh-hHHHHHHHHHHHHHHH
Q 044030 422 MTIG-GFPSFVEDMKKCLFLW 441 (449)
Q Consensus 422 ~~~~-~~~~~~~er~~~~~~~ 441 (449)
.++. +++.|+.||++|.+=.
T Consensus 403 ~~~~~~i~~f~~e~~~f~rE~ 423 (613)
T KOG0061|consen 403 LSMFGAVPVFPQERPIFLRET 423 (613)
T ss_pred HHHHhHHHHhHHHHHHHHHHH
Confidence 8876 6999999999998643
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-67 Score=573.69 Aligned_cols=393 Identities=34% Similarity=0.522 Sum_probs=313.5
Q ss_pred CCCeeEEEEeeEEEEeecC------------------------cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHH
Q 044030 33 DDGVFLTWKDLTVTIVSNG------------------------KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDA 88 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~------------------------~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~ 88 (449)
..++.+++.|++++ +... .++++.+|+|||+++++||++||+||||||||||||+
T Consensus 35 ~~~~~~~~~~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 35 CYPITLKFMDVCYR-VKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCceEEEEEeEEEE-EccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 34788999999998 4211 1235779999999999999999999999999999999
Q ss_pred HHcCCCCCCCceeEEEECCEeccc-ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc
Q 044030 89 LAGRLGSDTRQTGKILINGHKKAL-AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167 (449)
Q Consensus 89 l~G~~~~~~~~~G~I~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 167 (449)
|+|+.++. ..+|+|.+||++... ..+.++||+|++.+++.+||+||+.|++.++.+...+.++.+++++++++.+||.
T Consensus 114 LaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~ 192 (659)
T PLN03211 114 LAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT 192 (659)
T ss_pred HhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh
Confidence 99998763 258999999987532 2356999999999999999999999988766554445556667899999999999
Q ss_pred hhhCcc-----CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 168 DAMNTR-----IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 168 ~~~~~~-----~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
+++|+. +++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+ |||+++|||+.+
T Consensus 193 ~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~--TvI~~sH~~~~~ 269 (659)
T PLN03211 193 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGK--TIVTSMHQPSSR 269 (659)
T ss_pred hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCC--EEEEEecCCCHH
Confidence 988654 578999999999999999999999999999999999999999999999985 455 999999999767
Q ss_pred HHhhcCeEEEeeCCeEEEecChhhHHHHHHHCCCCCCCCCCchhHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHH
Q 044030 243 VFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSY 322 (449)
Q Consensus 243 i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (449)
++++||++++|++|++++.|+++++.+||+..|++||.+.||+||++++++.+..... .. ........+.+.+.|
T Consensus 270 i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~---~~--~~~~~~~~~~l~~~~ 344 (659)
T PLN03211 270 VYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDG---VS--EREKPNVKQSLVASY 344 (659)
T ss_pred HHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCC---cc--ccccchHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999998764321100 00 000111223344455
Q ss_pred HhchhhHHHHHHHHH--Hhh---h-----cCCCc--ccCccCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHH
Q 044030 323 KSCGIYEQVGSQVAE--ICK---Q-----NYGTL--EKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALG 390 (449)
Q Consensus 323 ~~s~~~~~~~~~~~~--~~~---~-----~~~~~--~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li 390 (449)
++.. .++..+.... ... . ..... ....+.++|++|+.+|++|++++ |||+.+.++|+++++++|++
T Consensus 345 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll 422 (659)
T PLN03211 345 NTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALL 422 (659)
T ss_pred Hhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHH
Confidence 4311 1111111110 000 0 00000 11224578999999999999998 89999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Q 044030 391 LATLFSNLGTGYRSIQARGSLLMFVASFITFMT-IGGFPSFVEDMKKCLF 439 (449)
Q Consensus 391 ~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~-~~~~~~~~~er~~~~~ 439 (449)
+|++||+++ ..++++|.|++||+++++.+.+ +..++.|+.||++|++
T Consensus 423 ~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~r 470 (659)
T PLN03211 423 AGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVK 470 (659)
T ss_pred HHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999985 6789999999999998877654 6789999999999975
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.8e-67 Score=570.78 Aligned_cols=374 Identities=35% Similarity=0.550 Sum_probs=320.2
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--ccCcEEEEcCCCCCCCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lT 131 (449)
+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 46789999999999999999999999999999999999987643458999999997642 2357999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCC------CCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR------RLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~------~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
|+||+.|++.++.+...+.++.+++++++++.+||.+++|++++ +|||||||||+||+||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988776656667777889999999999999999986 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHHCCCCCCCCCCch
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPS 285 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~~~~~~~ 285 (449)
|||+.++..+++.|++++++ |+ |||+++|||+.+++++||++++|++|+++++|+++++.+||+..|++||++.||+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~-g~--tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~a 272 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQK-GK--TIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPA 272 (617)
T ss_pred chhHHHHHHHHHHHHHHHhC-CC--EEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChH
Confidence 99999999999999999854 55 9999999998789999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcC----C--CcccCccCCCHHHHH
Q 044030 286 DHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQNY----G--TLEKKRKHASFLTQC 359 (449)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~s~~~q~ 359 (449)
|++++.++.+...+ ....+..+.+.+.|+++..+++..+.+........ . .....++..+|+.|+
T Consensus 273 d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 343 (617)
T TIGR00955 273 DFYVQVLAVIPGSE---------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQF 343 (617)
T ss_pred HHHHHHhhcCcccc---------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHH
Confidence 99998875432111 11223445666777777665554443332111100 0 011234678999999
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Q 044030 360 HVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTI-GGFPSFVEDMKKCL 438 (449)
Q Consensus 360 ~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~-~~~~~~~~er~~~~ 438 (449)
.+|++|++++.||||.++.+|+++.+++|+++|++||+++.++.++++|.|++||++++++|.++ ..++.|++||++|+
T Consensus 344 ~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~ 423 (617)
T TIGR00955 344 YALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFL 423 (617)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988875 56899999999997
Q ss_pred H
Q 044030 439 F 439 (449)
Q Consensus 439 ~ 439 (449)
+
T Consensus 424 r 424 (617)
T TIGR00955 424 R 424 (617)
T ss_pred H
Confidence 5
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-65 Score=596.04 Aligned_cols=383 Identities=30% Similarity=0.496 Sum_probs=324.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-cc
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-AY 114 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~~ 114 (449)
..++|+||++++ . .+.+.+.+|+|||+++++||++||+||||||||||||+|+|+.+++.+.+|+|.+||++... .+
T Consensus 758 ~~l~~~nl~~~~-~-~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~ 835 (1394)
T TIGR00956 758 DIFHWRNLTYEV-K-IKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ 835 (1394)
T ss_pred ceEEEEeeEEEe-c-CCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhh
Confidence 458999999983 2 12245689999999999999999999999999999999999987543468999999998642 24
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCC----CCChHHHHHHHHHHH
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR----RLSGGQKRRVSISIE 190 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~----~LSgGerqRv~ia~a 190 (449)
+.++||+|++.+++.+||+||+.|++.++.+...+.++.+++++++++.+||.+++|+.++ +|||||||||+||+|
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 5799999999999999999999999887765555566667889999999999999999997 799999999999999
Q ss_pred HHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC-eEEEecCh----
Q 044030 191 ILTRPK-LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG-QTVYFGPA---- 264 (449)
Q Consensus 191 L~~~P~-llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G-~iv~~g~~---- 264 (449)
|+.+|+ ||||||||+|||+.++..+++.|+++++ .|+ |||+++|||+..+++.||++++|++| +++++|++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~--tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~ 992 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQ--AILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENS 992 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCC--EEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccccc
Confidence 999997 9999999999999999999999999985 455 99999999986678899999999987 99999997
Q ss_pred hhHHHHHHHCCC-CCCCCCCchhHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcC
Q 044030 265 TAANEFFAFNGF-PCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQNY 343 (449)
Q Consensus 265 ~~~~~~f~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 343 (449)
+++.+||+..|+ +||++.||+||++++++..... ...+.+.+.|+.|..+++..++++.......
T Consensus 993 ~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1058 (1394)
T TIGR00956 993 HTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--------------HANQDYHEVWRNSSEYQAVKNELDRLEAELS 1058 (1394)
T ss_pred chHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--------------chhccHHHHHhcCHHHHHHHHHHHHhhcccc
Confidence 568899999996 9999999999999987542110 0012466778777766665555544322111
Q ss_pred -C-----CcccCccCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 044030 344 -G-----TLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVAS 417 (449)
Q Consensus 344 -~-----~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~ 417 (449)
. .....++++||++|+++|++|+++++||||.++++|+++++++|+++|++||+++++..++++|+|++|++++
T Consensus 1059 ~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~ 1138 (1394)
T TIGR00956 1059 KAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATV 1138 (1394)
T ss_pred cCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 0 0112457899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 044030 418 FITFMTIGGFPSFVEDMKKC 437 (449)
Q Consensus 418 ~~~~~~~~~~~~~~~er~~~ 437 (449)
+..+.....+|.|+.||.+|
T Consensus 1139 ~~~~~~~~~~~~f~~~r~~~ 1158 (1394)
T TIGR00956 1139 LFNPLIQQYLPPFVAQRDLY 1158 (1394)
T ss_pred HHHHHHHHhhhhHHHHHHHH
Confidence 88877777899999999885
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.5e-66 Score=597.91 Aligned_cols=400 Identities=26% Similarity=0.376 Sum_probs=329.4
Q ss_pred CCeeEEEEeeEEEEeecC--------------------------cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHH
Q 044030 34 DGVFLTWKDLTVTIVSNG--------------------------KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLD 87 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~--------------------------~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~ 87 (449)
..+.+.|+|++++....+ +...+.||+|||+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 367799999999842110 112356999999999999999999999999999999
Q ss_pred HHHcCCCCC-CCceeEEEECCEeccc----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC----CCCHHHHHHH-H
Q 044030 88 ALAGRLGSD-TRQTGKILINGHKKAL----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD----TMPKSDKKER-A 157 (449)
Q Consensus 88 ~l~G~~~~~-~~~~G~I~~~g~~~~~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~-v 157 (449)
+|+|+..+. .+.+|+|.+||.+... .++.++||+|++.+++.+||+|++.|++.++.+. ..++++..++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 999987421 2369999999987531 1345999999999999999999999998776432 2233443333 5
Q ss_pred HHHHHHcCCchhhCccC-----CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEE
Q 044030 158 EVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI 232 (449)
Q Consensus 158 ~~~l~~lgL~~~~~~~~-----~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ti 232 (449)
+++++.+||++++|+++ ++|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++++.|+ ||
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~--tv 263 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDT--TP 263 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCC--EE
Confidence 67899999999988765 689999999999999999999999999999999999999999999999965565 99
Q ss_pred EEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHHCCCCCCCCCCchhHHHHHhhhhhhHhhhhccCCCCCCcH
Q 044030 233 IASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTE 312 (449)
Q Consensus 233 i~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (449)
|+++|||.++++++||++++|++|+++++|+++++.+||++.|++||++.||+||++++.+.+.. ....+.+...+
T Consensus 264 ii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~~~~--- 339 (1394)
T TIGR00956 264 LVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEKKVP--- 339 (1394)
T ss_pred EEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccccCC---
Confidence 99999998889999999999999999999999999999999999999999999998887654321 11111111111
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHhhh---------------c---CCCcccCccCCCHHHHHHHHHHHHHHHHhhCh
Q 044030 313 EVINILKRSYKSCGIYEQVGSQVAEICKQ---------------N---YGTLEKKRKHASFLTQCHVLTRRSFVNMYRDL 374 (449)
Q Consensus 313 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~ 374 (449)
...+++.+.|++|..++++.++++..... . ........+..||++|+++|++|+++++||||
T Consensus 340 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~ 419 (1394)
T TIGR00956 340 RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNP 419 (1394)
T ss_pred CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCH
Confidence 23457888999988777666655432111 0 00111235778999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 044030 375 GYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMKKCLF 439 (449)
Q Consensus 375 ~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~er~~~~~ 439 (449)
.++++|+++++++||++|++||+++++++++++|.|++||++++.+|+++..++.++.||+||++
T Consensus 420 ~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~r 484 (1394)
T TIGR00956 420 SFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEK 484 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999965
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.2e-65 Score=592.31 Aligned_cols=386 Identities=27% Similarity=0.411 Sum_probs=323.6
Q ss_pred CeeEEEEeeEEEEeecCc--------ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 044030 35 GVFLTWKDLTVTIVSNGK--------KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN 106 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~--------~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~ 106 (449)
++.++|+||+|+ +.... ++.+.+|+|||+++++|+++||+||||||||||||+|+|+.+++ ..+|+|.+|
T Consensus 865 ~~~~~~~~v~y~-v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~in 942 (1470)
T PLN03140 865 PLAMSFDDVNYF-VDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRIS 942 (1470)
T ss_pred cceEEEEEEEEE-EccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEEC
Confidence 457999999998 43211 13457999999999999999999999999999999999997642 368999999
Q ss_pred CEeccc--ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC-----CCCCh
Q 044030 107 GHKKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----RRLSG 179 (449)
Q Consensus 107 g~~~~~--~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----~~LSg 179 (449)
|.+... .++.+|||+|++.+++.+||+|++.|++.++.+...+.++..+.++++++.+||.+++|+.+ ++|||
T Consensus 943 G~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 943 GFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 987532 23568999999999999999999999987776555555666678999999999999999997 58999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC-CeE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA-GQT 258 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~-G~i 258 (449)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+ |||+++|||+.++++.||++++|++ |++
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~--tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 9999999999999999999999999999999999999999999854 55 9999999997678999999999996 899
Q ss_pred EEecCh----hhHHHHHHHC-CC-CCCCCCCchhHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHH
Q 044030 259 VYFGPA----TAANEFFAFN-GF-PCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVG 332 (449)
Q Consensus 259 v~~g~~----~~~~~~f~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 332 (449)
+++|++ +++.+||+.. |. +||++.||+||++++++..... ....++.+.|++|+.+++..
T Consensus 1100 v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--------------~~~~d~~~~~~~s~~~~~~~ 1165 (1470)
T PLN03140 1100 IYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--------------KLGIDFAEHYKSSSLYQRNK 1165 (1470)
T ss_pred EEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--------------cccchHHHHHhccHHHHHHH
Confidence 999996 5789999997 66 4999999999999986532100 01125778899888877766
Q ss_pred HHHHHHhhhcCCCc---ccCccCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHH
Q 044030 333 SQVAEICKQNYGTL---EKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGY---RSIQ 406 (449)
Q Consensus 333 ~~~~~~~~~~~~~~---~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~---~~~~ 406 (449)
+.++++........ ...+++++|++|+++|++|+++++||||.++++|+++.+++||++|++||+++++. .+++
T Consensus 1166 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~ 1245 (1470)
T PLN03140 1166 ALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLT 1245 (1470)
T ss_pred HHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHH
Confidence 65554432211111 12457889999999999999999999999999999999999999999999999765 5678
Q ss_pred HHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Q 044030 407 ARGSLLMFVASFITFMTI-GGFPSFVEDMKKCLF 439 (449)
Q Consensus 407 ~~~g~lf~~~~~~~~~~~-~~~~~~~~er~~~~~ 439 (449)
++.|++|++++++.+.++ +.+|.|..||.+|++
T Consensus 1246 ~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~R 1279 (1470)
T PLN03140 1246 MVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYR 1279 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999888665 557999999999984
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.6e-64 Score=583.38 Aligned_cols=402 Identities=28% Similarity=0.379 Sum_probs=325.5
Q ss_pred CCeeEEEEeeEEEEe-ec---------------------------CcccccceeeeeeEEEecCeEEEEECCCCCcHHHH
Q 044030 34 DGVFLTWKDLTVTIV-SN---------------------------GKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTL 85 (449)
Q Consensus 34 ~~~~l~~~nls~~~~-~~---------------------------~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTL 85 (449)
+.+.+.|+||++... .. .++.++.||+|||+.+++||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 457789999999742 00 11234679999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceeEEEECCEeccc--ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-------CCCHHHH---
Q 044030 86 LDALAGRLGSDTRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-------TMPKSDK--- 153 (449)
Q Consensus 86 L~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-------~~~~~~~--- 153 (449)
||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+||+||+.|+++++.+. ..+.+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 999999987743458999999987632 2457999999999999999999999998765321 1111111
Q ss_pred ---------------------HHHHHHHHHHcCCchhhCc-----cCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 044030 154 ---------------------KERAEVTIREMGLQDAMNT-----RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207 (449)
Q Consensus 154 ---------------------~~~v~~~l~~lgL~~~~~~-----~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgL 207 (449)
+..++++++.+||++++|+ .+++|||||||||+||++|+.+|+++||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 1235789999999998765 45899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHHCCCCCCCCCCchhH
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDH 287 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~~~~~~~~~ 287 (449)
|+.++.++++.|++++++.|. |||+++|||.++++++||+|++|++|+++|+|+++++.+||+++|++||++.||+||
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~--Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADF 445 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEA--TVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADF 445 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCC--EEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHH
Confidence 999999999999999865555 999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHhhh---cCCCcccCccCCCHHHHHHHHHH
Q 044030 288 FLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQ---NYGTLEKKRKHASFLTQCHVLTR 364 (449)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~q~~~l~~ 364 (449)
++++.+.... +.... ....+......+++.+.|++++.++++.+++...... .......+++..+++.|++.|++
T Consensus 446 l~~v~s~~~~-~~~~~-~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~ 523 (1470)
T PLN03140 446 LQEVTSKKDQ-EQYWA-DRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWD 523 (1470)
T ss_pred HHHhcCchhh-hhhhh-ccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHH
Confidence 8887654221 11110 0011111123456888999988777766655432111 01111234578899999999999
Q ss_pred HHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 044030 365 RSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGY---RSIQARGSLLMFVASFITFMTIGGFPSFVEDMKKCLF 439 (449)
Q Consensus 365 R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~er~~~~~ 439 (449)
|+++.++||+.++..|+++.+++|+++|++||+++.+. ...+.+.|++||++++++|.++++++.++.||+||++
T Consensus 524 R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~k 601 (1470)
T PLN03140 524 KEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYK 601 (1470)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 99999999999999999999999999999999997542 3456788999999999999999999999999999987
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.5e-66 Score=566.01 Aligned_cols=380 Identities=33% Similarity=0.486 Sum_probs=329.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-c-cc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-L-AY 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-~-~~ 114 (449)
...|+|+.++ .. .+.+.+++|+|||+.++||-++||||+||||||||||+|+|+...+ ..+|+|++||.+.+ . ..
T Consensus 787 V~~w~dl~~~-~~-~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 787 VFYWVDLPYE-MP-IQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFA 863 (1391)
T ss_pred eEEEEeCCcc-cc-ccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhc
Confidence 4677888777 32 2336789999999999999999999999999999999999997653 47999999999865 3 34
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCC----CCChHHHHHHHHHHH
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR----RLSGGQKRRVSISIE 190 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~----~LSgGerqRv~ia~a 190 (449)
|.+|||.|+|.+.+.+||+|.|.|++.+|+|...+.+++.+.++++++.++|++++|..|+ +||.+||||++||.+
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 6799999999999999999999999999999999999988999999999999999998885 499999999999999
Q ss_pred HHhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee-CCeEEEecChhh--
Q 044030 191 ILTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS-AGQTVYFGPATA-- 266 (449)
Q Consensus 191 L~~~P-~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~-~G~iv~~g~~~~-- 266 (449)
|+.+| .||+|||||||||+.++..|++.++++++ .|+ ||+|++|||+.++++.||++++|+ .|++||+|+..+
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGq--tIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQ--TILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCC--eEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccccc
Confidence 99999 89999999999999999999999999995 555 999999999999999999999997 589999999754
Q ss_pred --HHHHHHHCC-CCCCCCCCchhHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcC
Q 044030 267 --ANEFFAFNG-FPCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQNY 343 (449)
Q Consensus 267 --~~~~f~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 343 (449)
+.+||++.| .+||...|||||++++++...+. ..-.++.+.|++|..+++..+.++++.....
T Consensus 1021 ~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~--------------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~ 1086 (1391)
T KOG0065|consen 1021 SKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA--------------SLSVDFAEIWKNSEEYKRNKELVKELSQPPP 1086 (1391)
T ss_pred HHHHHHHHhcCCccCCCCCChHHHHHhhccccccc--------------ccCccHHHHHhccHHHHHHHHHHHHHhcCCc
Confidence 667999884 89999899999999987643211 1112588999999999999998888765422
Q ss_pred C----CcccCccCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 044030 344 G----TLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFI 419 (449)
Q Consensus 344 ~----~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~ 419 (449)
. ....+++++|+|.|++.+++|++..+||+|.++++|++..++.||++|+.||++|++..++||.+|++|+.+++.
T Consensus 1087 ~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~ 1166 (1391)
T KOG0065|consen 1087 GFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFS 1166 (1391)
T ss_pred cCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHh
Confidence 2 223456889999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHhhHHHH-HHHHHH
Q 044030 420 TFMTIGGFPSF-VEDMKK 436 (449)
Q Consensus 420 ~~~~~~~~~~~-~~er~~ 436 (449)
.-+..+..|.+ ..||-+
T Consensus 1167 ~~~~~~~~~~~v~~e~~y 1184 (1391)
T KOG0065|consen 1167 GPNNNQLQQPAVATERLY 1184 (1391)
T ss_pred hhhhhhhhhhHHhhhhhh
Confidence 66655544444 444433
No 9
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-57 Score=415.17 Aligned_cols=216 Identities=29% Similarity=0.452 Sum_probs=197.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||+++| |+..+|+|||++|++||+++|+|||||||||||+||+|+..++ +|+|.++|.+...
T Consensus 2 mi~i~~l~K~f------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSF------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEe------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhH
Confidence 58999999983 6789999999999999999999999999999999999999774 9999999975421
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.+|+|||+.+|||++||.||+.++...- .+.++++.++++.++|+.+||.+.+|.+|..|||||||||+||||
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence 2467999999999999999999999986432 246788889999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|+++++|||||+|||....++++.++++|++ |+|.|++||++ ..+.+.+|||++|++|+++..|+|++.
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e---GmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE---GMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc---CCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999999999999999999999999999965 55999999996 689999999999999999999998765
No 10
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-56 Score=493.71 Aligned_cols=380 Identities=27% Similarity=0.456 Sum_probs=327.3
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--ccCcEEEEcCCCCCCCCCCHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
..+|+|+|+-++||+++.++||+||||||||++|+|.++......|+|.+||.+.+. .++.++|++|+|.++|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 479999999999999999999999999999999999887644457899999987543 246799999999999999999
Q ss_pred HHHHHHHhccCCCC----CCHHHHH-HHHHHHHHHcCCchhhCccC-----CCCChHHHHHHHHHHHHHhCCCEEEEeCC
Q 044030 134 EAVYYSAQLQLPDT----MPKSDKK-ERAEVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEP 203 (449)
Q Consensus 134 e~l~~~~~~~~~~~----~~~~~~~-~~v~~~l~~lgL~~~~~~~~-----~~LSgGerqRv~ia~aL~~~P~llllDEP 203 (449)
|+|.|+++++.+.. .++.++. ...+.+++.+||++|+|+.+ +++||||||||++|.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999987632 2233322 26789999999999999998 79999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHHCCCCCCCCCC
Q 044030 204 TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQN 283 (449)
Q Consensus 204 tsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~~~~~ 283 (449)
|+|||+.++.++++.|+++++..+. |++++.|||+++++++||+|++|.+|+++|+||.+++.+||+++|+.||+..+
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~--t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGA--TALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcc--eEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 9999999999999999999988766 99999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHhhhc---CCCcccCccCCCHHHHHH
Q 044030 284 PSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQN---YGTLEKKRKHASFLTQCH 360 (449)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~q~~ 360 (449)
++|++.++.+ ...++.... ....+-......++.+.|.+++.+.++..++....... ......+++..++|.|++
T Consensus 366 ~ADfLt~vts-~k~~~~~~~-~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk 443 (1391)
T KOG0065|consen 366 TADFLTEVTS-KKDQEQYWN-KRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVK 443 (1391)
T ss_pred HHHHHHHhhc-Ccccccccc-ccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHH
Confidence 9997776654 222211111 11112222334678999999999988877765532211 112335678899999999
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 044030 361 VLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLG-TGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMKKCLF 439 (449)
Q Consensus 361 ~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~er~~~~~ 439 (449)
+|++|.|..++||..++..++++.+++|+++|++||+.+ .+..+.+.|.|++||.+++.+|+++++++..++.|+||+|
T Consensus 444 ~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~K 523 (1391)
T KOG0065|consen 444 ACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYK 523 (1391)
T ss_pred HHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHH
Confidence 999999999999999999999999999999999999999 7788899999999999999999999999999999999987
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-54 Score=403.42 Aligned_cols=217 Identities=27% Similarity=0.440 Sum_probs=201.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+++++|||+.| +++.+++|+||+|++||+++++|||||||||+||+|.+++.|+ +|+|++||+++..
T Consensus 1 MI~~~nvsk~y------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~ 71 (309)
T COG1125 1 MIEFENVSKRY------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPV 71 (309)
T ss_pred Cceeeeeehhc------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHH
Confidence 47899999983 5678999999999999999999999999999999999999874 9999999998642
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc--hhhCccCCCCChHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ--DAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.++.||||-|...|||++||.||+.+...+. ++++++.+++++++|+.+||+ ++++++|++|||||+|||.+||
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHH
Confidence 2467999999999999999999999988775 467788899999999999997 4899999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++|+|||||++|||.++.++-+.++++.++.|+ |||++|||. +|+++++|||++|++|+++.+++|+++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~k--TivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGK--TIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCC--EEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999988876 999999996 6899999999999999999999999875
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-53 Score=409.77 Aligned_cols=221 Identities=26% Similarity=0.423 Sum_probs=201.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|++++|++.| ..+..+...+|+|||++|++||++||+|.||||||||++||.++..|+ +|+|.++|.++..
T Consensus 1 mI~l~~vsK~~-~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~ 76 (339)
T COG1135 1 MIELENVSKTF-GQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEA 76 (339)
T ss_pred CeEEEeeeeee-ccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChH
Confidence 47899999984 322223467999999999999999999999999999999999999874 9999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.||++||+++|+...||.||++|...+. +.++++.++++.++++.+||++.++.+|.+|||||||||+||
T Consensus 77 ~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIA 153 (339)
T COG1135 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIA 153 (339)
T ss_pred HHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHH
Confidence 2467999999999999999999999998875 467889999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|||+.+|++|++|||||+|||.+...|+++|+++.++.|. ||+++||++ +-+.++||||++|++|+++..|+..++
T Consensus 154 RALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lgl--TIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 154 RALANNPKILLCDEATSALDPETTQSILELLKDINRELGL--TIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCC--EEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999999999999999999999988877 999999996 689999999999999999999998765
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-53 Score=397.96 Aligned_cols=205 Identities=31% Similarity=0.480 Sum_probs=188.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.+.++++++.| +...+|+|+|++|.+||+++|+||||||||||||+|+|+.+|. +|+|.++|.+.......
T Consensus 3 ~l~i~~v~~~f------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSF------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEe------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCCCC
Confidence 57899999983 4478999999999999999999999999999999999999874 99999999987545567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++||||++.++|.+||.||+.|+.... +.++++.++++.++|+.+||.+..|++|++|||||||||+|||||+.+|+
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~ 150 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPK 150 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998765 24566677799999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
+|+||||+++||+.++..+.+.|.++.++.++ ||+++|||. +|+..++|||++|.++
T Consensus 151 lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~--TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 151 LLLLDEPFGALDALTREELQDELLRLWEETRK--TVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEEcCCcchhhHHHHHHHHHHHHHHHHhhCC--EEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999999999988766 999999997 5888999999999984
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1e-52 Score=391.44 Aligned_cols=220 Identities=30% Similarity=0.463 Sum_probs=201.8
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|++++|++++ |++.|++||||+|++||+++|+||||||||||||+|.|+++|+ +|+|+++|.++..
T Consensus 6 ~~~I~vr~v~~~f------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSF------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeec------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccC
Confidence 4468999999982 7889999999999999999999999999999999999999885 9999999987521
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv 185 (449)
.++++|++||+..||..|||+||+.|..+-+ ..++++..++.+..-|+.+||... ++..|.+|||||+||+
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRv 154 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRV 154 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHH
Confidence 1357999999999999999999999987644 346788888889999999999877 9999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||||++.+|+|+|+||||+||||.++..+-++|+++.+..|. |++++|||. ++++.+||++++|.+|++++.|+++
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~--T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL--TVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPE 231 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCC--EEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988766 999999996 5899999999999999999999999
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 232 el~ 234 (263)
T COG1127 232 ELL 234 (263)
T ss_pred HHH
Confidence 875
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.4e-52 Score=401.61 Aligned_cols=220 Identities=31% Similarity=0.465 Sum_probs=196.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|+++..
T Consensus 2 ~L~~~~ls~~y------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGY------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEE------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHH
Confidence 58999999983 5788999999999999999999999999999999999999874 8999999987632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++||||.....+.+||+|.+.++...+... ....++.++.+++.|+.+|+.+.+++.+.+|||||||||.||||
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 2367999999998888999999999986543221 12234445578999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+++|++|+||||||.||...+.++++++++++++.|. |||+++||++ .+.++||++++|++|+++++|+|+++.
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~--tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGL--TVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCC--EEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999977766 9999999985 789999999999999999999998764
No 16
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.3e-52 Score=410.93 Aligned_cols=221 Identities=34% Similarity=0.557 Sum_probs=198.7
Q ss_pred eEEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
.++++||++.| + ++.+|+||||+|++||++||+||||||||||+|+|+|+..| ++|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 4 VIEVRNLTKKY------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLGYDVVKEPA 74 (293)
T ss_pred eeeecceEEEe------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEEcCEeCccCHH
Confidence 47889999983 5 57899999999999999999999999999999999999987 49999999987542
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++++||+||++.+++.+||+|++.|.+.++.. +....+++++++++.+||.+..++++++||+|||||++||+||
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL---SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence 245799999999999999999999999998743 2245567899999999999877899999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f 271 (449)
+++|+++||||||+||||.++..++++|++++++.|. ||++|||++ +++..+||+|++|++|++++.|+++++...+
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~--tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV--TILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCc--EEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 9999999999999999999999999999999976434 999999997 5899999999999999999999998876554
Q ss_pred H
Q 044030 272 A 272 (449)
Q Consensus 272 ~ 272 (449)
.
T Consensus 229 ~ 229 (293)
T COG1131 229 G 229 (293)
T ss_pred c
Confidence 3
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-52 Score=412.17 Aligned_cols=217 Identities=30% Similarity=0.488 Sum_probs=201.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| |+..+|+|+|++|++||+++|+||||||||||||+|||+..|+ +|+|.++|++.+. .
T Consensus 3 ~i~l~~v~K~y------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSF------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEc------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChh
Confidence 68999999983 3333999999999999999999999999999999999999874 9999999998643 3
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.+++|||+..|||+|||+||+.|+++.+ +.++++.++++.++.+.|+|++.+|+++.+|||||||||+|||||+.
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence 478999999999999999999999998875 46778889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++++||||+|+||+..+..+...|+++.++.|. |+|++|||. .|+..++|||++|++|++...|+|.++-
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~--T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGT--TTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCC--cEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 99999999999999999999999999999988866 999999996 6899999999999999999999998774
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.8e-52 Score=389.71 Aligned_cols=209 Identities=32% Similarity=0.492 Sum_probs=183.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc------
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA------ 111 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~------ 111 (449)
++++||++.| ..+. ....+|++|||+|++||+++|+|||||||||||++|.|+..| ++|.|.++|.+..
T Consensus 2 i~~~~v~k~y-~~~~-~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIY-GLGG-EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEe-ccCC-cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCEEcCcCCHHH
Confidence 5789999984 2221 226799999999999999999999999999999999999987 4999999997643
Q ss_pred ---cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhC-ccCCCCChHHHHHHHH
Q 044030 112 ---LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN-TRIRRLSGGQKRRVSI 187 (449)
Q Consensus 112 ---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~~~~LSgGerqRv~i 187 (449)
.+++.+|||||+..|+|++||.||+.+++.+. ..+....+++++++++.+||.+..+ ++|.+|||||||||+|
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAI 153 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAI 153 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHH
Confidence 12357999999999999999999999987654 2233356677899999999997766 8899999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||||+++|++|++||||.+||+.+...|++++++++++.|. |||++|||+ ++...|||++.|.+|++
T Consensus 154 ARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~--tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 154 ARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGK--TIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCC--EEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999977766 999999996 68899999999999984
No 19
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-52 Score=415.37 Aligned_cols=218 Identities=27% Similarity=0.469 Sum_probs=201.4
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||++.| ++..+|+|+|++|++||+++|+|||||||||||++|+|+..|+ +|+|.++|+++..
T Consensus 4 ~~l~i~~v~k~y------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSF------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeec------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh
Confidence 468999999983 5788999999999999999999999999999999999999875 9999999998642
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.++.+|+|||+..|||+|||.||+.|+++++ ....+++.++++.++++.++|++.+++++.+|||||||||+|||||+
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence 3578999999999999999999999998743 23445667889999999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
.+|++||||||.|+||...+.++...|+++.++.|. |.|++|||. .|+..++|||++|++|+|...|+|+++
T Consensus 153 ~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~gi--T~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 153 PEPKVLLLDEPLSALDAKLREQMRKELKELQRELGI--TFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred cCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCC--eEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence 999999999999999999999999999999988866 999999996 689999999999999999999999887
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-51 Score=380.54 Aligned_cols=223 Identities=30% Similarity=0.482 Sum_probs=197.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
++|+++||++.| + +++++|+||||+|++||+++|+|||||||||||++|+|+..+ ++|+|.+||.++..
T Consensus 2 ~~i~~~nl~k~y-p----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTY-P----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeec-C----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC---CcceEEecccchhccch
Confidence 478999999983 3 678899999999999999999999999999999999999877 48999999976421
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-----TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 182 (449)
.++++||++|++.+.+.+||.+|+..+..-+.+. ++..++.+..+-+.|+.+|+.+.+-++...|||||+
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQ 153 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQ 153 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchh
Confidence 1357999999999999999999998875433221 233345567788899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+|||||+++|++||.|||+++|||.++.++|+.|++++++.|. |||++.|+. +.+.++|||++-|++|+++|.|
T Consensus 154 QRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~--Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGI--TVIVNLHQV-DLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCC--EEEEEechH-HHHHHHHhhheEecCCcEEEeC
Confidence 9999999999999999999999999999999999999999988866 999999996 5789999999999999999999
Q ss_pred ChhhHHH
Q 044030 263 PATAANE 269 (449)
Q Consensus 263 ~~~~~~~ 269 (449)
+++++.+
T Consensus 231 ~~~el~~ 237 (258)
T COG3638 231 PASELTD 237 (258)
T ss_pred ChhhhhH
Confidence 9987643
No 21
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-50 Score=386.91 Aligned_cols=219 Identities=29% Similarity=0.458 Sum_probs=187.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-- 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-- 113 (449)
..++++|+++.| +..++|+||||++++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+....
T Consensus 3 ~~i~v~nl~v~y------~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSY------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEE------CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEcccccccccc
Confidence 368999999983 3226999999999999999999999999999999999999874 99999999875433
Q ss_pred cCcEEEEcCCCCC--CCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 114 YGTSAYVTQDDTL--ITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 114 ~~~i~yv~Q~~~l--~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+||||||...+ -..+||+|.+.++...+.+. ....+..++.+++.|+.+|+.+.+|+.+++|||||+|||.||||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 3579999996532 23369999999875433211 11223447889999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|+|||||+|+|+.++..++++|++++++ |+ ||++++||+ ..+.++||+|+.|+ +++++.|+++++.
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~--tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GK--TVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 99999999999999999999999999999999976 66 999999997 57999999999996 6788999998764
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-51 Score=392.79 Aligned_cols=220 Identities=27% Similarity=0.463 Sum_probs=200.4
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eccc
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKAL 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~---~~~~ 112 (449)
++|.++|+++. + +...+++|||++|+.||++|++|||||||||||++|+|+..|+ +|.|.+||+ +.+.
T Consensus 1 m~i~i~~~~~~-~-----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 1 MSIRINNVKKR-F-----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSN 71 (345)
T ss_pred Cceeehhhhhh-c-----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhc
Confidence 46788899887 2 5678999999999999999999999999999999999999885 999999998 4332
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..++||||+|+..+|++|||.+|+.|+.+.+ ....++.+.+.++.++|+.+.|++..+++|..|||||||||++||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALAR 150 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALAR 150 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHH
Confidence 2468999999999999999999999998776 223456678889999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++|+||||+++||...+..+.+.|+++.++.|. |++++|||+ ++++++||||++|++|+|...|+++++-
T Consensus 151 ALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~--ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 151 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV--TTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCc--eEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999987776 999999996 6899999999999999999999998874
No 23
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-51 Score=371.93 Aligned_cols=218 Identities=29% Similarity=0.428 Sum_probs=198.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc----c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA----L 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~----~ 112 (449)
+|++++++++| . ...++++||||+++.||++||+|||||||||+|++|++++.|+ +|.|+++|.+.. .
T Consensus 1 Ml~v~~l~K~y-~----~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~ 72 (245)
T COG4555 1 MLEVTDLTKSY-G----SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSF 72 (245)
T ss_pred Ceeeeehhhhc-c----CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHH
Confidence 47889999983 1 2345999999999999999999999999999999999999885 999999998642 2
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.+++||.++.+..+|..||++|||.|.++++ +++..+.+++++++.+.|+|.+++|++++++|.||||||+|||||+
T Consensus 73 vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 73 VRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALV 149 (245)
T ss_pred HhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHh
Confidence 3467999998899999999999999999886 5677888899999999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
++|++++|||||||||..+...+.+.++++.+ .|+ +||++||.+ +++..+||+|++|++|++++.|+++++..
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr--~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGR--AVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCc--EEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999984 444 999999996 68999999999999999999999987654
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2e-49 Score=395.36 Aligned_cols=217 Identities=27% Similarity=0.426 Sum_probs=194.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| +++.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 7 ~i~i~~l~k~~------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 7 PIDFRNVEKRY------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARH 77 (306)
T ss_pred eEEEEeEEEEE------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHH
Confidence 68999999983 4567999999999999999999999999999999999999874 8999999987532
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.++.+||+||++.+++.+||+||+.|.+.++ +.+..+..+++.++++.++|.+..++++++||||||||++||+||+
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 2357999999999999999999999876654 2334455567889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
++|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~--till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGK--TILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999974 455 999999996 58999999999999999999999987754
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4e-49 Score=397.66 Aligned_cols=220 Identities=24% Similarity=0.399 Sum_probs=194.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| .. ..+.+.+|+||||+|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.++..
T Consensus 1 mI~~~~lsk~y-~~-~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~ 75 (343)
T TIGR02314 1 MIKLSNITKVF-HQ-GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNS 75 (343)
T ss_pred CEEEEEEEEEE-CC-CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 37899999983 21 112357999999999999999999999999999999999999874 8999999987532
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++|+||+..+++.+||+||+.++.... +.+.++.++++.++++.+||.+..++++.+|||||||||+||
T Consensus 76 ~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IA 152 (343)
T TIGR02314 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIA 152 (343)
T ss_pred HHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 1357999999999999999999999976542 234556667889999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|||+.+|++||||||||+||+.++..+++.|++++++.|. |||++||++ +.+.++||++++|++|++++.|+++++
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~--tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL--TILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999876666 999999996 578899999999999999999998776
No 26
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-49 Score=399.09 Aligned_cols=218 Identities=27% Similarity=0.432 Sum_probs=195.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| . +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 3 ~l~i~~l~~~~-~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSY-D----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEe-C----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 48999999983 1 3467999999999999999999999999999999999999874 8999999987632 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++||+|++.+||++||+||+.|+.+.+ ..+..+.+++++++++.+||.+.+++++.+|||||||||+|||||+.
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 367999999999999999999999987543 23455566789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||++||+.++..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKT--TSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999876666 999999996 5799999999999999999999998763
No 27
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.7e-49 Score=398.12 Aligned_cols=217 Identities=28% Similarity=0.441 Sum_probs=196.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 4 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRF------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEe------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999999774 8999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++||||+..+||++||+||+.|+...+ ..+..+.+++++++++.+||++.+++++.+|||||||||+|||||+.
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 367999999999999999999999987643 24456667789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|+++||||||++||+.++..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|++++.|+++++.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~--tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGV--TTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999876666 999999996 5899999999999999999999998764
No 28
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-48 Score=395.87 Aligned_cols=217 Identities=28% Similarity=0.490 Sum_probs=196.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++.. .
T Consensus 6 ~l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRF------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEE------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 68999999983 3467999999999999999999999999999999999999874 9999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++||+|+..+||++||+||+.|+...+ ..++.+.+++++++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 367999999999999999999999987653 24456667789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||+|||+.++..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNI--TSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999876666 999999996 5899999999999999999999998763
No 29
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-49 Score=368.96 Aligned_cols=220 Identities=30% Similarity=0.454 Sum_probs=191.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+.|+++|+++.| . ++.....+|+||||+|.+||++||+|+||||||||.++|+|+.+|+ +|+|.++|.+...
T Consensus 2 ~~l~v~nl~~~y-~-~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 2 TLLSVRNLSIVY-G-GGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKR 76 (252)
T ss_pred ceEEEeceEEEe-c-CCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCcccc
Confidence 468999999983 2 1112236999999999999999999999999999999999999884 9999999976432
Q ss_pred ---ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHH
Q 044030 113 ---AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 113 ---~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ 186 (449)
.++.+-+||||+ .+.|..||++.|.-+.... +.++. ++++.++++.+||. +.+++++.+|||||+||++
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRia 151 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIA 151 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHH
Confidence 246789999997 5789999999998776542 33333 34489999999996 6889999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
|||||+.+|++||||||||+||+..+.+|+++|.+++++.+. |.|++|||. ..+..+|||+++|++|+++..++..+
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~l--t~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~~ 228 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGL--TYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTEE 228 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCc--eEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechhh
Confidence 999999999999999999999999999999999999988766 999999996 58999999999999999999999987
Q ss_pred HH
Q 044030 267 AN 268 (449)
Q Consensus 267 ~~ 268 (449)
+.
T Consensus 229 l~ 230 (252)
T COG1124 229 LL 230 (252)
T ss_pred hh
Confidence 74
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-48 Score=374.51 Aligned_cols=216 Identities=31% Similarity=0.469 Sum_probs=188.7
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSF------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhh
Confidence 4689999983 3457999999999999999999999999999999999999774 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.++.++|++|++.+++.+||.||+.++..... ..+..+..+++.++++.+||.+..++++.+|||||||||+||+
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~ 149 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALAR 149 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 13469999999999999999999988754321 1234445567889999999999899999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|+++||||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 150 ALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL--TSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999854455 999999996 578899999999999999999988754
No 31
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.1e-48 Score=395.36 Aligned_cols=217 Identities=31% Similarity=0.458 Sum_probs=195.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCce--eEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT--GKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~--G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ + |+|.++|++...
T Consensus 5 ~l~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~ 75 (362)
T TIGR03258 5 GIRIDHLRVAY------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAP 75 (362)
T ss_pred EEEEEEEEEEE------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCC
Confidence 48899999983 3457999999999999999999999999999999999999874 7 999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++||+|+..+||.+||+||+.|+...+ ..+..+.+++++++++.+||++..++++++|||||||||+|||||
T Consensus 76 ~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL 152 (362)
T TIGR03258 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAI 152 (362)
T ss_pred HHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHH
Confidence 2367999999999999999999999987643 244556667899999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc-CCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD-GIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~-g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.+|++|||||||+|||+..+..+.+.|+++.++. |. |+|++|||+ +++..+||+|++|++|+++..|+++++.
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~--til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL--TILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998664 56 999999996 5899999999999999999999998774
No 32
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.7e-49 Score=355.94 Aligned_cols=212 Identities=28% Similarity=0.435 Sum_probs=192.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+|+||++.| . +++++|+||||+|++||++-|+||||||||||||+|++...| ++|+|+++|.++..
T Consensus 1 mI~f~~V~k~Y-~----~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~ 72 (223)
T COG2884 1 MIRFENVSKAY-P----GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGR 72 (223)
T ss_pred Ceeehhhhhhc-C----CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeeccccccc
Confidence 47899999984 2 447799999999999999999999999999999999999887 49999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.+++||+||||..+.++.||+||++|+++.. +.+..+.++++.++|+.+||.+.++..|.+|||||||||+||
T Consensus 73 ~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA 149 (223)
T COG2884 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA 149 (223)
T ss_pred ccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence 2468999999999999999999999998775 567788899999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||++.+|++|+.||||.+|||..+..|++++.++.+ .| .||+++|||. ..+..+-.+++.|++|+++....
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~G--tTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LG--TTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cC--cEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999984 44 4999999994 56777888999999999987653
No 33
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3e-48 Score=395.70 Aligned_cols=219 Identities=25% Similarity=0.433 Sum_probs=196.6
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|+++|+++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++...
T Consensus 12 ~~~L~l~~l~~~~------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 12 SPLVELRGISKSF------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVP 82 (375)
T ss_pred CceEEEEEEEEEE------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCC
Confidence 3468999999983 3467999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++||||+..+||++||.||+.|+...+ ..+..+.+++++++++.+||.+..++++.+|||||||||+|||||
T Consensus 83 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred HHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 2367999999999999999999999986543 234555567889999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.+|++|||||||+|||+.++..+.+.|++++++.|. |+|++|||+ .++..++|++++|++|+++..|+++++.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~--tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI--TFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999876666 999999996 5899999999999999999999998763
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3e-48 Score=393.44 Aligned_cols=221 Identities=23% Similarity=0.366 Sum_probs=195.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+.|+++||++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|+++|++...
T Consensus 1 ~~L~i~~l~~~~------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 1 MSIEIANIKKSF------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHA 71 (353)
T ss_pred CEEEEEEEEEEe------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 458999999983 3467999999999999999999999999999999999999774 8999999987632
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++||+|++.++|.+||.||+.|+...... ...+.++.++++.++++.++|.+..++++.+|||||||||+|||||
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 235799999999999999999999998654211 1234455667899999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.+|++|||||||+|||+.++..+.+.|++++++.|. |+|++||++ .++..+||++++|++|++++.|+++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~--tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKF--TSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999866566 999999996 5899999999999999999999998764
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.9e-48 Score=391.65 Aligned_cols=219 Identities=28% Similarity=0.433 Sum_probs=194.7
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|+++||++.| +++.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 39 ~~~i~i~nl~k~y------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 39 TVAIDLAGVSKSY------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARA 109 (340)
T ss_pred ceeEEEEEEEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcch
Confidence 3569999999983 4567999999999999999999999999999999999999874 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.+||+||++.+++.+||.||+.+....+ ..+..+..++++++++.++|.+..++++++|||||||||+||+|
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHH
Confidence 2357999999999999999999999766544 22334455678889999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
|+++|+++||||||+|||+.++..+++.|+++++ .|. |||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~--tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGK--TILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999985 455 999999996 58999999999999999999999988754
No 36
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-49 Score=360.06 Aligned_cols=217 Identities=25% Similarity=0.424 Sum_probs=191.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~- 112 (449)
..++++||++.| +.+.+|+|||+.|++++++|+||||||||||||+++..+.. |....+|+|.++|+++-.
T Consensus 6 ~~~~~~~l~~yY------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYY------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEE------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 468999999973 67899999999999999999999999999999999998764 334568999999987521
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGer 182 (449)
.++++|+|||.+..|| +|++||+.|+.+++ +...++.++.++..|+...| .+.+++...+|||||+
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~---g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH---GIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhh---ccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence 2467999999999999 89999999999876 23336677888888888877 3567788899999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++|||||+.+|+|||||||||+|||.+...|-++|.+|+++ -|||++||.+ ..+.+..|+..++..|+++++|
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~----yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKK----YTIVIVTHNM-QQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhc----cEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEc
Confidence 9999999999999999999999999999999999999999853 3999999996 6899999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 231 ~T~~i 235 (253)
T COG1117 231 PTDKI 235 (253)
T ss_pred CHHhh
Confidence 99866
No 37
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-48 Score=366.91 Aligned_cols=214 Identities=29% Similarity=0.467 Sum_probs=188.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 1 i~~~~~~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKY------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEE------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHH
Confidence 4689999983 3467999999999999999999999999999999999998774 8999999986531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+||+||+.+....+ .....+.++++.++++.+||.+..++++.+|||||||||+||+||+.
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~ 148 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH 148 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 246999999999999999999999876543 22334455678999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
+|++++|||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|+++..|++++
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM--TILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999865455 999999996 57889999999999999999988764
No 38
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.1e-48 Score=383.14 Aligned_cols=218 Identities=28% Similarity=0.435 Sum_probs=191.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+.|+++||++.| +++.+|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSY------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEe------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHH
Confidence 468999999983 3467999999999999999999999999999999999998774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++.++|++|++.+++.+||+||+.+....+ ..+..+.+++++++++.++|.+..++++++|||||||||+||+||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARAL 150 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 1356999999999999999999998755432 223344456678899999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
+.+|+++||||||+|||+.++..+++.|+++++ .|. |||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~--til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGK--TILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999975 455 999999997 57889999999999999999999987643
No 39
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-48 Score=365.80 Aligned_cols=217 Identities=31% Similarity=0.473 Sum_probs=186.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
|+++|+++.| . +..+.+.+|+|+||+|++|++++|+||||||||||+++|+|+.+| .+|+|.++|.+.....+.+
T Consensus 1 l~~~~l~~~~-~-~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTY-G-GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEc-C-CCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECccccCcE
Confidence 4689999983 2 101115799999999999999999999999999999999999877 4899999998764334579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
+|++|++.+++.+|++||+.+....+ ........+.+.++++.+|+.+..++++.+||||||||++||+||+.+|++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999998875433 223344456788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee--CCeEEEecChh
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS--AGQTVYFGPAT 265 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~--~G~iv~~g~~~ 265 (449)
+||||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|+ +|+++..++.+
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGK--TVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCC--EEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999755555 999999997 46889999999999 79999887653
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-48 Score=365.05 Aligned_cols=210 Identities=35% Similarity=0.546 Sum_probs=183.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTY------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEe------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhh
Confidence 4688999983 3457999999999999999999999999999999999998774 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|++||+.+..... ........+++.++++.+|+.+..++++.+||||||||++||+||+.+
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 56999999999999999999998875432 123344456788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|+++||||||+|||+.++..+++.|++++++.|. |||++||++ .++.++||++++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGI--TTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999865555 999999996 5788999999999999998765
No 41
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-48 Score=370.71 Aligned_cols=218 Identities=28% Similarity=0.448 Sum_probs=194.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA----- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~----- 111 (449)
.+.++|++++| . +...+|+|+|+++++||.++|+||||||||||+++|+|+++|. +|.|.++|.+..
T Consensus 3 ~i~~~~l~~~y-~----~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRY-P----GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEc-C----CCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhH
Confidence 57899999983 2 2268999999999999999999999999999999999999884 899999998743
Q ss_pred -cccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 112 -LAYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 112 -~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..++.+|||+|++. .+..-||.|.+.|+.... +.+.++.+++++++++.+|+.+.+++.+..|||||||||+||.
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~ 151 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAG 151 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhH
Confidence 12467999999973 344559999999998654 5667778899999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|+.+|++|+|||||||||+..+..+++.++++.++.|+ |||++|||. +.+..+||++++|++|+++++|+|.++.
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~--tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i~ 227 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGK--TIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEIF 227 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCC--eEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHHh
Confidence 999999999999999999999999999999999976555 999999996 6899999999999999999999987654
No 42
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-47 Score=369.28 Aligned_cols=220 Identities=24% Similarity=0.404 Sum_probs=189.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+.++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 1 MSIEVRNVSKRF------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP---DSGTILFGGEDATDVPV 71 (239)
T ss_pred CEEEEEeEEEEE------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCc
Confidence 358999999983 345799999999999999999999999999999999999877 48999999987532
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++|++.+++.+||.||+.++...... ......+..+++.++++.+||.+..++++.+|||||||||+||+||
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 235699999999999999999999887543210 0012233445688999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV--TTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999999999865555 999999997 578899999999999999999988765
No 43
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-47 Score=390.69 Aligned_cols=219 Identities=25% Similarity=0.426 Sum_probs=196.7
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|+++|+++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++...
T Consensus 17 ~~~l~l~~v~~~~------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 17 TPLLEIRNLTKSF------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVP 87 (377)
T ss_pred CceEEEEeEEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCC
Confidence 3469999999983 3457999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.+|||||++.+||++||.||+.|+...+ ..+..+.++++.++++.++|.+..++++.+|||||||||+|||||
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 2467999999999999999999999987543 234556677899999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.+|++|||||||++||+..+..+.+.|+++.++.|. |+|++|||+ .++..++|++++|++|+++..|+++++.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV--TCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999866665 999999996 5899999999999999999999998764
No 44
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-47 Score=389.97 Aligned_cols=217 Identities=28% Similarity=0.424 Sum_probs=194.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... .
T Consensus 3 ~l~i~~l~~~~------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAY------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEe------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHh
Confidence 48999999983 3467999999999999999999999999999999999999774 8999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++||+|+..+++.+||+||+.|+...+ ..+..+.++++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 356999999999999999999999986543 23345556788999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||+|||+.++..+.+.|++++++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~--tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR--TMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999865555 999999996 5789999999999999999999998764
No 45
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2e-47 Score=380.36 Aligned_cols=216 Identities=26% Similarity=0.430 Sum_probs=192.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|++++| +++.+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~ 72 (301)
T TIGR03522 2 SIRVSSLTKLY------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKE 72 (301)
T ss_pred EEEEEEEEEEE------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHH
Confidence 58999999983 3567999999999999999999999999999999999998774 8999999987532
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.++.+||+||++.+++.+||.||+.+.+.++ +.+.++..++++++++.+||.+..+++++.|||||||||+||+||+
T Consensus 73 ~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALI 149 (301)
T ss_pred HHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 1356999999999999999999999877654 2334445567899999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
++|+++||||||+|||+.++..+++.|++++ + +. |||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~--tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DK--TIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999996 3 44 999999996 57999999999999999999999988754
No 46
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-47 Score=386.30 Aligned_cols=221 Identities=25% Similarity=0.409 Sum_probs=193.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| .. ..+.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|. +|+|.++|.+...
T Consensus 1 mi~i~~l~~~y-~~-~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~ 75 (343)
T PRK11153 1 MIELKNISKVF-PQ-GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEK 75 (343)
T ss_pred CEEEEeEEEEe-CC-CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHH
Confidence 37899999983 21 011457999999999999999999999999999999999999774 8999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++|++|++.+++.+||.||+.+..... +.+..+.++++.++++.+||.+..++++.+|||||||||+||
T Consensus 76 ~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lA 152 (343)
T PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIA 152 (343)
T ss_pred HHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 1356999999999999999999999876543 233445566789999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ +++.++||++++|++|++++.|+++++.
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~--tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGL--TIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999865555 999999996 5788999999999999999999987663
No 47
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-49 Score=358.34 Aligned_cols=218 Identities=25% Similarity=0.459 Sum_probs=195.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|..+|+.++| ++++++++||+++++||+++++|||||||||.+.++.|+.+|+ +|+|.+||.+++.
T Consensus 4 ~L~a~~l~K~y------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 4 TLVAENLAKSY------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMH 74 (243)
T ss_pred EEEehhhhHhh------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChH
Confidence 57889999883 5788999999999999999999999999999999999999886 9999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.+..+||+||++..|..|||+||+......+.. .....+.+.+++++|+.|++.++++++...||||||||+.||||
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARa 153 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARA 153 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHH
Confidence 124699999999999999999999988876531 12234556678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|+.++|||||+|.||.+..+|.++++.|+++ |. .|+++-|+.. +...+|||.+++++|++.++|+|+++.
T Consensus 154 La~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r-gi--GvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 154 LAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR-GI--GVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC-Cc--eEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHh
Confidence 99999999999999999999999999999999854 44 9999999975 789999999999999999999999875
No 48
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-48 Score=362.59 Aligned_cols=219 Identities=28% Similarity=0.494 Sum_probs=204.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-cC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-YG 115 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-~~ 115 (449)
.|++++|+++| +++.+++|+||++++|+|++++|||||||||++++|.|++.|+ +|+|.++|.+.+.. +.
T Consensus 2 ~L~ie~vtK~F------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSF------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72 (300)
T ss_pred ceEEecchhcc------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhhh
Confidence 58899999982 7889999999999999999999999999999999999999874 99999999987543 46
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
+|||+|.+..|++.+||.|.+.|.++++ +++.++.+.+++.||+.+++.....+++.+||.|++|++.+..+++++|
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP 149 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP 149 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCC
Confidence 7999999999999999999999999987 7888999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHH
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f 271 (449)
+++|||||+|||||.+.+.+-+.+.+++++ |.|||+|||.+ +.+.++||++++|++|+.|.+|+.+++...|
T Consensus 150 eLlILDEPFSGLDPVN~elLk~~I~~lk~~---GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 150 ELLILDEPFSGLDPVNVELLKDAIFELKEE---GATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred CEEEecCCccCCChhhHHHHHHHHHHHHhc---CCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 999999999999999999999999999854 55999999996 5799999999999999999999999887655
No 49
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.2e-47 Score=363.80 Aligned_cols=207 Identities=28% Similarity=0.453 Sum_probs=180.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| .. +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAY-PG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEe-cC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhH
Confidence 7899999983 21 1246999999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.++.++|++|++.+++.+||.||+.+..... .....+.++++.++++.+|+.+..++++.+|||||||||+||+
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 151 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIAR 151 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 1246999999999999999999999876542 2233445567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++||++ +++..+||++++|++|++
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GT--TVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999753 55 999999997 578889999999999974
No 50
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.7e-47 Score=360.54 Aligned_cols=210 Identities=28% Similarity=0.480 Sum_probs=184.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 i~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRF------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEE------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccc
Confidence 4689999983 3457999999999999999999999999999999999998774 8999999987532 12
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|++||+.+..... .....+.+++++++++.+|+.+..++++.+||||||||++||+||+.+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 46999999999999999999998875432 223444556788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|++++|||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGT--TTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999865555 999999996 5788999999999999999876
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-47 Score=365.49 Aligned_cols=219 Identities=26% Similarity=0.442 Sum_probs=189.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| . ++.+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 i~~~~l~~~~-~-~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVF-G-DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEc-c-CCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHH
Confidence 7899999983 2 1101127999999999999999999999999999999999999774 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+|+.||+.+....+ ........+.+.++++.+|+.+..++++..|||||||||+||+
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 153 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIAR 153 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHH
Confidence 1356999999999999999999998875432 1233444567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ +++.++||++++|++|++++.|+++++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGL--TIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999865555 999999996 578899999999999999999987655
No 52
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.7e-47 Score=381.07 Aligned_cols=206 Identities=26% Similarity=0.442 Sum_probs=184.2
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----ccCcEEEEcCCCCCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----AYGTSAYVTQDDTLITT 129 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~~~~i~yv~Q~~~l~~~ 129 (449)
+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|.+... .++.+||++|++.+++.
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 4567999999999999999999999999999999999999874 8999999987532 13469999999999999
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 130 LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
+||+||+.+.+.++ +.+..+.+++++++++.+||.+..+++++.|||||||||+||+||+.+|++|||||||+|||+
T Consensus 81 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 81 LTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99999999876553 233444556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 210 AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 210 ~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
.++..+++.|++++++ |. |||++||++ .++.++||++++|++|++++.|+++++..
T Consensus 158 ~~~~~l~~~l~~~~~~-g~--tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 158 RTRRAIWDYIRALKEE-GV--TILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHHHhC-CC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999854 55 999999996 58899999999999999999999987754
No 53
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.7e-47 Score=365.12 Aligned_cols=217 Identities=31% Similarity=0.457 Sum_probs=187.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRF------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEE------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHH
Confidence 4688999983 3456999999999999999999999999999999999998774 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC-------CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT-------MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 184 (449)
....++|++|++.+++.+||+||+.+......... ....+..+++.++++.+|+.+..++++++||||||||
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 12459999999999999999999988754321110 0123445678899999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|++++|||||+|||+.++..+++.|+++++ .|. |||++||++ +++..+||++++|++|+++..|++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGI--TVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999985 455 999999997 578899999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 228 ~~~ 230 (236)
T cd03219 228 DEV 230 (236)
T ss_pred HHh
Confidence 765
No 54
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.9e-47 Score=364.02 Aligned_cols=214 Identities=27% Similarity=0.479 Sum_probs=187.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRY------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEe------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhH
Confidence 4688999983 3457999999999999999999999999999999999999774 8999999986421
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++.+..||||||||++||+||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 148 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARAL 148 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 1246999999999999999999998865432 122334456788999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++.++||++++|++|+++..|+++++
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGI--GVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999999999999985 444 999999997 478999999999999999999987654
No 55
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.5e-47 Score=385.72 Aligned_cols=206 Identities=25% Similarity=0.362 Sum_probs=186.6
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---------ccCcEEEEcCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---------AYGTSAYVTQDD 124 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---------~~~~i~yv~Q~~ 124 (449)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|+.+| ++|+|.++|.++.. .++.++||+|++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 567799999999999999999999999999999999999987 49999999987532 135799999999
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 044030 125 TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPT 204 (449)
Q Consensus 125 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPt 204 (449)
.++|++||+||+.|+..+. +.+.++..+++.++++.+||++..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999999999999987653 3445566778999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
++||+.++..+.+.|.++.++.|+ |||++|||+ .++..+||+|++|++|+++..|+++++.
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~--Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQK--TIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999865555 999999996 5789999999999999999999998764
No 56
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-46 Score=372.87 Aligned_cols=222 Identities=26% Similarity=0.394 Sum_probs=189.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| .......+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y-~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIY-MEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEEC-CCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCcc
Confidence 48899999983 211111257999999999999999999999999999999999999774 8999999987532
Q ss_pred ---ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc--hhhCccCCCCChHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ--DAMNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~~~~LSgGerqRv~ 186 (449)
..+.+|||||++. .+...||+||+.|+.... +.+.++..+++.++++.+||. +..+++++.||||||||++
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~ 154 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVA 154 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHH
Confidence 1357999999963 333579999999875432 244555667789999999997 6789999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|++|++++.|++++
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~--tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNM--TIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999865555 999999996 57888999999999999999999887
Q ss_pred HH
Q 044030 267 AN 268 (449)
Q Consensus 267 ~~ 268 (449)
+.
T Consensus 232 ~~ 233 (287)
T PRK13637 232 VF 233 (287)
T ss_pred HH
Confidence 64
No 57
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=9.7e-48 Score=343.53 Aligned_cols=213 Identities=27% Similarity=0.461 Sum_probs=187.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
+.+.+|++.| + +.==..+++|+.||++||+||||||||||||+|+|+..| .+|+|++||++... ..
T Consensus 2 l~L~~V~~~y------~--~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~t~~~P~~ 70 (231)
T COG3840 2 LALDDVRFSY------G--HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTASPPAE 70 (231)
T ss_pred ccccceEEee------C--cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC---CCceEEEcCeecCcCCccc
Confidence 4567788773 1 123457889999999999999999999999999999977 49999999998542 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+-++++||+.++|.++||.+|+.++....+ .+ .++.+++++.++..+||..+.++.+.+|||||||||++||+|+.+
T Consensus 71 RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~ 147 (231)
T COG3840 71 RPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVRE 147 (231)
T ss_pred CChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhcc
Confidence 568999999999999999999988864322 12 345677899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
-+|++||||+|+|||.-+.++..++.+++++.+. |++|+||+| +++.+++|+++++++|+|.++|+.++.
T Consensus 148 ~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~--TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 148 QPILLLDEPFSALDPALRAEMLALVSQLCDERKM--TLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred CCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCC--EEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHH
Confidence 9999999999999999999999999999988766 999999998 579999999999999999999988755
No 58
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-47 Score=374.20 Aligned_cols=232 Identities=28% Similarity=0.373 Sum_probs=193.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| ..+....+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|.+...
T Consensus 1 mi~~~~v~~~y-~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 76 (288)
T PRK13643 1 MIKFEKVNYTY-QPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQ 76 (288)
T ss_pred CEEEEEEEEEe-CCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 37899999983 211111236999999999999999999999999999999999999774 8999999987521
Q ss_pred -----ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHH
Q 044030 113 -----AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -----~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqR 184 (449)
.++.++||+|++ .+++ .||.||+.|+.... +.+..+.+.++.++++.+||. +..++.+..||||||||
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr 152 (288)
T PRK13643 77 KEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR 152 (288)
T ss_pred ccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH
Confidence 134699999986 4555 59999999876432 234555667889999999996 57899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||+|++|++|++++.|++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~--til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQ--TVVLVTHLM-DDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999985 355 999999996 578899999999999999999999
Q ss_pred hhHH---HHHHHCCCCCCC
Q 044030 265 TAAN---EFFAFNGFPCPT 280 (449)
Q Consensus 265 ~~~~---~~f~~~g~~~~~ 280 (449)
+++. +.+...|+.+|.
T Consensus 229 ~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHcCHHHHHHcCCCCCh
Confidence 8764 234455665553
No 59
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-47 Score=364.50 Aligned_cols=218 Identities=31% Similarity=0.487 Sum_probs=186.2
Q ss_pred EEEEeeEEEEeecCcccc-cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 38 LTWKDLTVTIVSNGKKGS-SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
++++||++.| ++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTY------PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEec------CCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHh
Confidence 4688999883 23 57999999999999999999999999999999999998774 8999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC-----CCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL-----PDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++.+||.||+.+...... ..........+++.++++.+++.+..++++.+|||||||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 12469999999999999999999987542110 001112234456888999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|++++.|+
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGI--TVIVSLHQV-DLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999999999999999999999865555 999999997 57888999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
+++.
T Consensus 229 ~~~~ 232 (241)
T cd03256 229 PAEL 232 (241)
T ss_pred HHHh
Confidence 8765
No 60
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5.8e-47 Score=359.97 Aligned_cols=215 Identities=35% Similarity=0.564 Sum_probs=186.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
|+++||++.| .. +.+++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~-~~---~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTY-KK---GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEe-CC---CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHH
Confidence 4689999983 10 1267999999999999999999999999999999999998774 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+|++||+.+....+ ..+..+..+++.++++.++|.+..++++.+||||||||++||+||+.
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 150 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG 150 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 346999999999999999999998876543 22333445678899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ ..+..+||++++|++|++++.|+++++
T Consensus 151 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~--tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 151 GPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GR--SIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CC--EEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999974 34 999999997 468889999999999999999987653
No 61
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-48 Score=360.21 Aligned_cols=221 Identities=29% Similarity=0.447 Sum_probs=197.2
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..+++++|++. + |+-.+++||||++++||+++||||||||||||+|+|+|.++|+ +|+|.++|++++.
T Consensus 3 ~lL~v~~l~k~-F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p 73 (250)
T COG0411 3 PLLEVRGLSKR-F-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73 (250)
T ss_pred ceeeeccceee-c-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCH
Confidence 35789999998 2 7789999999999999999999999999999999999999885 8999999997642
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC--------CC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL--------PD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 180 (449)
.+..++..||...+|++|||.||+..+...+. +. ....++..+++.++|+.+||.+.+|++.++||+|
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 13468899999999999999999998865321 11 1134556778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||+.|||||+.+|++|+||||.+||.+....++.+.|++++++.|. ||+++-||+ ..++.+||||++|+.|++++
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~--tillIEHdM-~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGV--TILLIEHDM-KLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCc--EEEEEEecc-HHHhhhccEEEeccCCcCcc
Confidence 999999999999999999999999999999999999999999975555 999999996 68999999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+|+++.
T Consensus 231 eG~P~eV~ 238 (250)
T COG0411 231 EGTPEEVR 238 (250)
T ss_pred cCCHHHHh
Confidence 99999875
No 62
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.4e-47 Score=361.05 Aligned_cols=209 Identities=32% Similarity=0.487 Sum_probs=178.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| . +..+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-~-~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTY-G-GGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEe-c-CCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhH
Confidence 4689999983 2 1001157999999999999999999999999999999999998774 8999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|++.+++.+||+||+.+....+ .......++++.++++.+||.+..+++++.|||||||||+||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA 152 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHH
Confidence 1246999999999999999999999876543 122334456788999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++. ++. +||++++|++|++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGT--TIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--eEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999864455 9999999974 565 9999999999974
No 63
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-47 Score=356.79 Aligned_cols=209 Identities=29% Similarity=0.517 Sum_probs=183.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-ccCc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-AYGT 116 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~~~~ 116 (449)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..+.
T Consensus 1 l~~~~l~~~~------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRF------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEE------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCchhHHHHcc
Confidence 4689999983 345799999999999999999999999999999999999877 48999999986532 2356
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 148 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPE 148 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998875543 22334455678899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+++|||||+|||+.++..+.+.|++++++ |. |||++||++ .++.++||++++|++|++++.|
T Consensus 149 ~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~--tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 149 LLILDEPFSGLDPVNVELLKDVIRELARA-GK--TVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999754 44 999999996 5788899999999999998764
No 64
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6e-47 Score=365.17 Aligned_cols=219 Identities=30% Similarity=0.447 Sum_probs=186.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++||++.| . +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVY-P----NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeec-C----CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHH
Confidence 6899999982 1 1457999999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC---C--CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL---P--DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~---~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 184 (449)
.++.++|++|++.+++.+||.||+.++..... . ......+.++++.++++.+|+.+..++++.+||||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 153 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQR 153 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 13469999999999999999999987532100 0 001123345678899999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ ..+.++||++++|++|++++.|++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~ 230 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGI--TVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAP 230 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999755555 999999997 478899999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 231 ~~~ 233 (243)
T TIGR02315 231 SEL 233 (243)
T ss_pred HHh
Confidence 654
No 65
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-46 Score=370.86 Aligned_cols=221 Identities=26% Similarity=0.350 Sum_probs=188.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| .......+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y-~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (290)
T PRK13634 2 DITFQKVEHRY-QYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKN 77 (290)
T ss_pred EEEEEEEEEEE-CCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 37899999984 211111256999999999999999999999999999999999999774 8999999987531
Q ss_pred -----ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHH
Q 044030 113 -----AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -----~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqR 184 (449)
..+.++||+|++ .++ ..||.||+.|+.... ..+..+.+++++++++.+||. +..++++..||||||||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr 153 (290)
T PRK13634 78 KKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRR 153 (290)
T ss_pred chHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHH
Confidence 124699999986 455 469999999875432 234455556789999999997 67899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ .++.++||++++|++|++++.|++
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~--tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGL--TTVLVTHSM-EDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999865566 999999996 578899999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 231 ~~~~ 234 (290)
T PRK13634 231 REIF 234 (290)
T ss_pred HHHh
Confidence 8763
No 66
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.4e-46 Score=366.86 Aligned_cols=217 Identities=27% Similarity=0.440 Sum_probs=189.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 7 LVDMRGVSFTR------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRS 77 (269)
T ss_pred eEEEeCeEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChh
Confidence 68999999983 3467999999999999999999999999999999999998774 8999999986531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|+..+++.+||.||+.+...... ..+....++++.++++.+|+.+..++++..|||||||||+||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 12469999999999999999999988643221 123334456678899999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 156 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGV--TCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCc--EEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999865555 999999996 578899999999999999999988765
No 67
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.2e-46 Score=357.41 Aligned_cols=213 Identities=30% Similarity=0.459 Sum_probs=184.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|+++.| . ++.....+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 2 l~~~~v~~~~-~-~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRF-R-DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEec-C-CCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHH
Confidence 6899999983 2 1101126999999999999999999999999999999999998774 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.+|+.+..++++..||||||||++||+||+.
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 356999999999999999999998865443 22344456678899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+|++|+|||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGK--CILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999974 455 999999996 5788999999999999998754
No 68
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-46 Score=364.69 Aligned_cols=213 Identities=32% Similarity=0.454 Sum_probs=186.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
|+++|+++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|+++|. +|+|.++|.+.......+
T Consensus 2 l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 72 (255)
T PRK11248 2 LQISHLYADY------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72 (255)
T ss_pred EEEEEEEEEe------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCCcE
Confidence 7899999983 3457999999999999999999999999999999999998774 899999998764333468
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
+|++|++.+++.+||.||+.+..... .....+..+++.++++.+||.+..++++.+|||||||||+||+||+.+|++
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998865432 223344456788999999999989999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee--CCeEEEecChh
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS--AGQTVYFGPAT 265 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~--~G~iv~~g~~~ 265 (449)
|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|+ +|+++..++.+
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~--tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGK--QVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999998654455 999999997 57889999999998 59999887653
No 69
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.2e-46 Score=360.82 Aligned_cols=215 Identities=26% Similarity=0.419 Sum_probs=187.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHF------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEE------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhH
Confidence 6899999983 3457999999999999999999999999999999999998774 8999999987531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.++|++|++.+++.+||.||+.+...... .....+..+++.++++.+|+++..++++..||||||||++||+|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 150 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA 150 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence 13469999999999999999999988642111 22334455678899999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|++++.
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGM--TMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999999974 355 999999997 578889999999999999999988765
No 70
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=361.77 Aligned_cols=215 Identities=28% Similarity=0.458 Sum_probs=187.6
Q ss_pred EEEEeeEEEEeecCcccc-cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 38 LTWKDLTVTIVSNGKKGS-SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
++++|+++.| ++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 71 (242)
T cd03295 1 IEFENVTKRY------GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPV 71 (242)
T ss_pred CEEEEEEEEe------CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChH
Confidence 4688999983 23 56999999999999999999999999999999999998774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch--hhCccCCCCChHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD--AMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+||+||+.+..... ........+++.++++.+|+.+ ..++++.+|||||||||+||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 72 ELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred HhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHH
Confidence 1246899999999999999999998875432 2233445567889999999985 789999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~--tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGK--TIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999865455 999999997 478899999999999999999988765
No 71
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.4e-46 Score=358.78 Aligned_cols=215 Identities=30% Similarity=0.534 Sum_probs=186.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... .
T Consensus 2 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAY------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhh
Confidence 6899999983 3457999999999999999999999999999999999998774 8999999986531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+|++||+.+....+ ........+.+.++++.+||.+..++++..||||||||++||+||+.
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~ 149 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLH 149 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 246999999999888999999998765432 22334445678899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++. ++. .||++++|++|+++..|+++++.
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGL--SVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCC--EEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999854455 9999999974 565 59999999999999999887654
No 72
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.3e-46 Score=357.82 Aligned_cols=212 Identities=28% Similarity=0.445 Sum_probs=184.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| +++.+|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGY------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeec------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHH
Confidence 4689999883 3457999999999999999999999999999999999999774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-CCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM-GLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|++||+.+...... ..+.+.++.++++.+ ++.+..++++.+||||||||++||+|
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHH
Confidence 12469999999999999999999988754321 122345567788888 58888899999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++++|||||+|||+.++..+++.|+++++ .|. |||++||++ .++..+||++++|++|+++..|+++++
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGV--TILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999985 444 999999996 578899999999999999999987654
No 73
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-46 Score=357.35 Aligned_cols=216 Identities=23% Similarity=0.361 Sum_probs=184.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
.++++||++.| .. ....+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|+++|++....
T Consensus 5 ~l~~~~l~~~~-~~-~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRY-QE-GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVIFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEc-CC-CCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCCHH
Confidence 58999999983 21 10125699999999999999999999999999999999999877 489999999875310
Q ss_pred ------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 114 ------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 114 ------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.+.++|++|++.+++.+|++||+.+..... .....+.++++.++++.+||.+..++++.+||||||||++|
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~l 156 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAI 156 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 146999999999999999999999875432 22334455678899999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ +++.. +|++++|++|++++.++.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGT--AFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999999754555 999999997 45655 589999999999988763
No 74
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.1e-46 Score=384.57 Aligned_cols=218 Identities=27% Similarity=0.441 Sum_probs=190.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|++...
T Consensus 3 ~L~~~nls~~y------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEF------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEE------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHH
Confidence 58999999983 4568999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++||+|+..+++.+||+||+.++...+.. ........+++++++++.+|+.+..++++.+|||||||||+||||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 135799999999999999999999886432210 011123445678999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+++|++|||||||+|||+.++..++++|+++++ .|. |||++||++ +++.++||++++|++|++++.|+++++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~--TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGK--TAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999985 455 999999996 578999999999999999999999874
No 75
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-46 Score=371.74 Aligned_cols=221 Identities=25% Similarity=0.333 Sum_probs=187.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA----- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~----- 111 (449)
.|+++||++.| ..+......+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|+++|.+..
T Consensus 2 ~i~~~~l~~~y-~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (305)
T PRK13651 2 QIKVKNIVKIF-NKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEEE-CCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeccccccc
Confidence 48999999983 211111246999999999999999999999999999999999999874 899999986431
Q ss_pred ------------------------cccCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC
Q 044030 112 ------------------------LAYGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166 (449)
Q Consensus 112 ------------------------~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 166 (449)
...+.+|||+|++ ..+...||+||+.|+.... +.+.++..+++.++++.+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL 154 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGL 154 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCC
Confidence 0124699999985 2334569999999876532 34555666788999999999
Q ss_pred c-hhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 167 Q-DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 167 ~-~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
. +..++++..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ +.+.+
T Consensus 155 ~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~--tiiivtHd~-~~~~~ 230 (305)
T PRK13651 155 DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGK--TIILVTHDL-DNVLE 230 (305)
T ss_pred ChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC--EEEEEeeCH-HHHHH
Confidence 6 789999999999999999999999999999999999999999999999999999984 455 999999996 57889
Q ss_pred hcCeEEEeeCCeEEEecChhhHH
Q 044030 246 LFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 246 ~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||++++|++|++++.|+++++.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999998764
No 76
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.4e-46 Score=374.62 Aligned_cols=226 Identities=23% Similarity=0.359 Sum_probs=193.7
Q ss_pred CeeEEEEeeEEEEeecCc--------ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 044030 35 GVFLTWKDLTVTIVSNGK--------KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN 106 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~--------~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~ 106 (449)
...|+++||+++| ..+. .+...+|+||||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++
T Consensus 6 ~~~l~v~~l~~~~-~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~~~ 81 (331)
T PRK15079 6 KVLLEVADLKVHF-DIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEVAWL 81 (331)
T ss_pred CceEEEeCeEEEE-CCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEEEC
Confidence 4579999999984 2111 1235799999999999999999999999999999999999977 48999999
Q ss_pred CEeccc--------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCC
Q 044030 107 GHKKAL--------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIR 175 (449)
Q Consensus 107 g~~~~~--------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~ 175 (449)
|.+... .++.++||+|++ .++|.+||.||+.+......+ ..+.++.++++.++++.+||. +.+++++.
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~ 160 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYPH 160 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCcc
Confidence 987531 135699999997 588999999999987643311 234556667788999999994 57899999
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 176 RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 176 ~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+|||||||||+||+||+.+|++||+||||+|||+.++..+++.|+++.++.|. |||++|||+ ..+..+||++++|++
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~--til~iTHdl-~~~~~~~dri~vl~~ 237 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGL--SLIFIAHDL-AVVKHISDRVLVMYL 237 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999866666 999999996 578889999999999
Q ss_pred CeEEEecChhhHH
Q 044030 256 GQTVYFGPATAAN 268 (449)
Q Consensus 256 G~iv~~g~~~~~~ 268 (449)
|++++.|+++++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999987663
No 77
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.2e-46 Score=359.59 Aligned_cols=212 Identities=29% Similarity=0.443 Sum_probs=182.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeccc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL-----GSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~-----~~~~~~~G~I~~~g~~~~~ 112 (449)
|+++||++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|++ +| .+|+|.++|++...
T Consensus 1 i~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYY------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEc------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhhh
Confidence 4689999983 3457999999999999999999999999999999999998 55 48999999987521
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCcc--CCCCChHHHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR--IRRLSGGQKR 183 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~--~~~LSgGerq 183 (449)
..+.++|++|++.++ .+||+||+.++..... .....+.++++.++++.+|+.+..+++ +.+|||||||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 148 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQ 148 (227)
T ss_pred cchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHH
Confidence 124699999999888 7899999988754321 112223456788999999999887777 5999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|+++||||||+|||+.++..+++.|++++++ . |||++||++ .++..+||++++|++|++++.|+
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--Y--TIVIVTHNM-QQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--c--EEEEEeccH-HHHHHhCCEEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999999999753 5 999999997 57888999999999999999998
Q ss_pred hhh
Q 044030 264 ATA 266 (449)
Q Consensus 264 ~~~ 266 (449)
+++
T Consensus 224 ~~~ 226 (227)
T cd03260 224 TEQ 226 (227)
T ss_pred ccc
Confidence 754
No 78
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=349.82 Aligned_cols=216 Identities=27% Similarity=0.431 Sum_probs=190.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||+..| |..++|++|||++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++++.
T Consensus 3 mL~v~~l~~~Y------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~---~~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 3 MLEVENLSAGY------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP---RSGRIIFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeEeecc------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEECCeecCCCCHH
Confidence 58999999873 678999999999999999999999999999999999999977 38999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-CCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM-GLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.+..++||||...+||.|||+|||..++..... +...+...+++.+.| .|.+..+++.+.|||||||.++|||
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaR 149 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIAR 149 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHH
Confidence 235799999999999999999999988654311 111222277888888 5889999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++|+|||||.||-|.-..+|.+.|++++++.|. ||+++-++. ..+.+++||.++|.+|+++++|+++++.
T Consensus 150 ALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~--tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 150 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGM--TILLVEQNA-RFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCc--EEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999999999999999999976555 999998885 5789999999999999999999998774
No 79
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-46 Score=364.82 Aligned_cols=216 Identities=24% Similarity=0.340 Sum_probs=187.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| . +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRY-K----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEe-C----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHH
Confidence 58999999983 1 2356999999999999999999999999999999999999774 8999999987532
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. .++..||.||+.|+.... +.+..+.++++.++++.+||.+..++++..|||||||||+||+|
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~lara 152 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGV 152 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHH
Confidence 1246999999963 445679999999875432 23344555678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++ +.+.++||++++|++|++++.|+++.+
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~--tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GK--TVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999854 55 999999996 578889999999999999999998653
No 80
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-46 Score=368.69 Aligned_cols=222 Identities=24% Similarity=0.356 Sum_probs=188.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
|.++++||++.| ..+....+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 1 ~~l~~~~l~~~y-~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 1 MTIRFDNVSYTY-QKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTK 76 (286)
T ss_pred CEEEEEEEEEEE-CCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 358999999983 211111246999999999999999999999999999999999999774 8999999987521
Q ss_pred ------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHH
Q 044030 113 ------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq 183 (449)
.++.+|||||++ .+++ .||.||+.|+.... ..+..+..+++.++++.+||. +..++.+..|||||||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q 152 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMR 152 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 134699999986 4555 49999999875432 234455567789999999997 7889999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ +++.++||++++|++|++++.|+
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENK--TIILVSHDM-NEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999865555 999999996 57889999999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
++++.
T Consensus 230 ~~~~~ 234 (286)
T PRK13646 230 PKELF 234 (286)
T ss_pred HHHHH
Confidence 87754
No 81
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-47 Score=364.61 Aligned_cols=224 Identities=27% Similarity=0.393 Sum_probs=201.7
Q ss_pred eeEEEEeeEEEEeec----------C--------cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 044030 36 VFLTWKDLTVTIVSN----------G--------KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97 (449)
Q Consensus 36 ~~l~~~nls~~~~~~----------~--------~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~ 97 (449)
+.++++|+++-+-.. + +.+...-++|+||+++.|||+.|||-||||||||+++|.++..|
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-- 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-- 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--
Confidence 357889998863110 1 12334568999999999999999999999999999999999987
Q ss_pred CceeEEEECCEecc---------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch
Q 044030 98 RQTGKILINGHKKA---------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD 168 (449)
Q Consensus 98 ~~~G~I~~~g~~~~---------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 168 (449)
++|+|+++|.++. .+++.+++|||...|+|+.||.||..|+..++ +.++++.++++.++|+.+||+.
T Consensus 81 -t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~ 156 (386)
T COG4175 81 -TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEG 156 (386)
T ss_pred -CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchh
Confidence 4999999998742 23467999999999999999999999998886 6788999999999999999999
Q ss_pred hhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcC
Q 044030 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248 (449)
Q Consensus 169 ~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D 248 (449)
+.+++|++|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.++.++.++ |||++|||. +|++++.|
T Consensus 157 ~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~K--TIvFitHDL-dEAlriG~ 233 (386)
T COG4175 157 YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK--TIVFITHDL-DEALRIGD 233 (386)
T ss_pred hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCC--eEEEEecCH-HHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999888766 999999996 68999999
Q ss_pred eEEEeeCCeEEEecChhhHH
Q 044030 249 NLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 249 ~v~~l~~G~iv~~g~~~~~~ 268 (449)
||.+|++|+++..|+|+++.
T Consensus 234 rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 234 RIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred eEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999885
No 82
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.3e-46 Score=360.85 Aligned_cols=216 Identities=30% Similarity=0.412 Sum_probs=187.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKF------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEE------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccccc
Confidence 48999999983 345799999999999999999999999999999999999876 48999999986421
Q ss_pred ---------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 113 ---------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ---------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++.+|+.||+.++..... ........+++.++++.+||.+..++++.+|||||||
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~q 151 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQ 151 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHH
Confidence 12469999999999999999999987543211 1233444567889999999998899999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++||++ .++.++||++++|++|++++.|+
T Consensus 152 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KR--TMVIVTHEM-SFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CC--EEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999854 55 999999996 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 228 ~~~~ 231 (250)
T PRK11264 228 AKAL 231 (250)
T ss_pred HHHH
Confidence 8765
No 83
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.4e-46 Score=354.58 Aligned_cols=205 Identities=29% Similarity=0.496 Sum_probs=180.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++|+++.| +++.+|+|+||++++|++++|+||||||||||+++|+|+++| .+|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTY------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEE------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCCcccchHHHH
Confidence 4689999983 345799999999999999999999999999999999999877 48999999986531 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+||.||+.+..... .. .+++++++++.+++.+..++++.+|||||||||+||+||+.+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 46999999999999999999998875432 11 134678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRD-QGI--TVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999985 444 999999996 4788899999999999998765
No 84
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-46 Score=363.36 Aligned_cols=209 Identities=28% Similarity=0.379 Sum_probs=184.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+.....+
T Consensus 11 ~~l~i~~l~~~~------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRY------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEE------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhhC
Confidence 458999999983 3457999999999999999999999999999999999998774 8999999987543345
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
.++|++|++.+++.+||+||+.+... . ...+++.++++.+||.+..++++..||||||||++||+||+.+|
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 79999999999998999999987521 0 12356788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~--tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGF--TVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999755555 999999996 4788899999999999999988653
No 85
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-46 Score=365.64 Aligned_cols=219 Identities=28% Similarity=0.412 Sum_probs=189.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| . +.+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-~--~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKY-K--EDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEc-C--CCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHH
Confidence 58999999983 2 112246999999999999999999999999999999999999774 8999999987532
Q ss_pred -ccCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++ ..++.+||+||+.|+.... +.+.++..+++.++++.+||.+..++.+..||||||||++||+|
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAra 154 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGA 154 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 124699999997 4677789999999875432 23455556778999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++. ++ ..||++++|++|+++..|++++..
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQM--TVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999865565 9999999974 56 589999999999999999987754
No 86
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-46 Score=353.00 Aligned_cols=207 Identities=30% Similarity=0.505 Sum_probs=180.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
|+++|+++.| +++.+|+|+||++++| +++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 i~~~~~~~~~------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRY------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEE------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHH
Confidence 4689999983 3457999999999999 99999999999999999999998774 8999999976432 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+||.||+.+..... ..+..+..+.+.++++.+|+.+..++++.+|||||||||+||+||+.
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhc
Confidence 356999999999999999999998876543 12233445678899999999998999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|++++.|
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGE--DR--IVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999974 34 999999996 4688899999999999998765
No 87
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.1e-46 Score=353.54 Aligned_cols=205 Identities=30% Similarity=0.475 Sum_probs=179.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| . +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-~----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAY-P----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEe-C----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHH
Confidence 7899999983 1 2357999999999999999999999999999999999998764 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+|+.||+.+..... .......++++.++++.+++.+..++.+.+|||||||||+||+
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIAR 150 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 1246999999999999999999999875432 1233444567889999999998889999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
||+.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGT--TVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999975 455 999999997 57888999999999985
No 88
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-46 Score=366.07 Aligned_cols=214 Identities=26% Similarity=0.406 Sum_probs=186.7
Q ss_pred EEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc------
Q 044030 39 TWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL------ 112 (449)
Q Consensus 39 ~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~------ 112 (449)
.++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 26 ~~~~~~~~~------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~ 96 (269)
T cd03294 26 SKEEILKKT------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKEL 96 (269)
T ss_pred hhhhhhhhc------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhh
Confidence 456777762 5677999999999999999999999999999999999999774 8999999986531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+||.||+.+..... ........+++.++++.+||.+..++++.+|||||||||+||+
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAr 173 (269)
T cd03294 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLAR 173 (269)
T ss_pred hhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 1246999999999999999999999875432 1233444567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++++.|+++++
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQK--TIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999855555 999999996 578899999999999999999988765
No 89
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-46 Score=380.63 Aligned_cols=205 Identities=25% Similarity=0.390 Sum_probs=182.5
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---------ccCcEEEEcCCCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---------AYGTSAYVTQDDT 125 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---------~~~~i~yv~Q~~~ 125 (449)
...+|+|+||+|++||+++|+||||||||||||+|+|+++|. +|+|+++|.++.. .++.++|++|++.
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 345899999999999999999999999999999999999874 8999999987531 1246999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 126 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
+++.+||.||+.+....+ +.+..+.++++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 117 l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred CCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 999999999999986543 23344556678899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|||+.++..+.+.|++++++.|+ |||++||++ +++.++||++++|++|+++..|+++++.
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~g~--TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 194 ALDPLIRTEMQDELVKLQAKHQR--TIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCC--eEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999765555 999999996 5788999999999999999999987653
No 90
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=370.01 Aligned_cols=222 Identities=24% Similarity=0.344 Sum_probs=187.9
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
+..|+++|+++.| ..+....+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|+++|.+...
T Consensus 19 ~~~l~~~nl~~~y-~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVF-DEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEe-CCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccccc
Confidence 3469999999983 211111246999999999999999999999999999999999999874 8999999976421
Q ss_pred -------------------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhh
Q 044030 113 -------------------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAM 170 (449)
Q Consensus 113 -------------------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 170 (449)
.++.++||+|++ .+++ .||+||+.|+.... ..+..+..+++.++++.+||. +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 124699999987 4665 49999998875322 234455566788999999997 688
Q ss_pred CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
++.+.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ +++..+||++
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~--TiiivtHd~-~~~~~~adri 246 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNK--TVFVITHTM-EHVLEVADEV 246 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999999999974 455 999999996 4688999999
Q ss_pred EEeeCCeEEEecChhhHH
Q 044030 251 CLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 251 ~~l~~G~iv~~g~~~~~~ 268 (449)
++|++|+++..|+++++.
T Consensus 247 ~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIF 264 (320)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999998763
No 91
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7e-46 Score=358.95 Aligned_cols=216 Identities=25% Similarity=0.393 Sum_probs=186.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc---
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL--- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~--- 112 (449)
++++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 2 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLNLFY------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEEEEE------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 6899999983 34569999999999999999999999999999999999987621 128999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerqR 184 (449)
..+.++|++|++.+++ +|+.||+.+....+. ..+..+..+.+.++++.+|+. +..++++++||||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQR 152 (247)
T ss_pred chHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHH
Confidence 1346999999999888 999999998754321 123344556788999999998 78899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|+++||||||+|||+.++..+++.|+++++ +. |||++||++ .++..+||++++|++|+++..|++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KY--TIVIVTHNM-QQAARISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cC--eEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999974 25 999999996 578899999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 228 ~~~ 230 (247)
T TIGR00972 228 EQI 230 (247)
T ss_pred HHH
Confidence 765
No 92
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-46 Score=358.25 Aligned_cols=216 Identities=25% Similarity=0.458 Sum_probs=188.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAY------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEe------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 58899999983 3457999999999999999999999999999999999998774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+||.||+.+...... .....+.+.++.++++.+|+.+..+++++.|||||||||+||+|
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHH
Confidence 12469999999999999999999987643321 12233445678899999999998999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGL--GVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 9999999999999999999999999999999974 455 999999996 578899999999999999999988765
No 93
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-46 Score=357.93 Aligned_cols=216 Identities=26% Similarity=0.368 Sum_probs=186.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc----
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA---- 111 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~---- 111 (449)
|+|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 1 ~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 1 MSIQLNGINCFY------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKT 71 (242)
T ss_pred CEEEEEeeEEEE------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecccccc
Confidence 468999999983 345799999999999999999999999999999999999877 4899999998641
Q ss_pred -------cccCcEEEEcCCCCCCCCCCHHHHHHHHH-hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 112 -------LAYGTSAYVTQDDTLITTLTVKEAVYYSA-QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 112 -------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
...+.++|++|++.+++.+||.||+.+.. ... +....+...++.++++.+|+.+..++++.+|||||||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 148 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQ 148 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 01246999999999999999999997532 221 1233344567889999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++.++||++++|++|++++.|+
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~ 224 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGI--TQVIVTHEV-EVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999974 455 999999996 57788999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
+++.
T Consensus 225 ~~~~ 228 (242)
T PRK11124 225 ASCF 228 (242)
T ss_pred HHHh
Confidence 7643
No 94
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.1e-46 Score=352.48 Aligned_cols=206 Identities=26% Similarity=0.426 Sum_probs=179.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 1 l~~~~l~~~~-~----~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTY-P----NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEe-C----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHH
Confidence 4688999983 1 2257999999999999999999999999999999999998774 8999999986531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.++.++|++|++.+++.+|+.||+.+....+ ....++..+++.++++.+|+++..++++.+||||||||++||+
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 149 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIAR 149 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHH
Confidence 1246999999999999999999999876442 1233444567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||+.+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++ ..+..+||++++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~--tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GT--TVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CC--EEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999744 55 999999996 578889999999999974
No 95
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=370.60 Aligned_cols=225 Identities=26% Similarity=0.368 Sum_probs=190.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-TRQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-~~~~G~I~~~g~~~~~--- 112 (449)
.|+++||++.| . ...+...+|+||||+|++||++||+|+||||||||+++|+|++++. .+.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~-~-~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHF-G-DESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEE-C-CCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 58999999983 2 1112257999999999999999999999999999999999998642 1358999999987521
Q ss_pred ------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch---hhCccCCCCChHH
Q 044030 113 ------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---AMNTRIRRLSGGQ 181 (449)
Q Consensus 113 ------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgGe 181 (449)
..+.++||||++ .+.|.+|+.+++........ ....++.++++.++++.+||.+ .+++++++|||||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq 158 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGM 158 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 113699999997 57899999999877654321 2344556678899999999963 5789999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|++||+||||+|||+.++..+++.|++++++.|. |+|++|||+ ..+..+||+|++|++|++++.
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~--til~iTHdl-~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENM--ALVLITHDL-ALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999866665 999999996 578889999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|+++++.
T Consensus 236 g~~~~~~ 242 (326)
T PRK11022 236 GKAHDIF 242 (326)
T ss_pred CCHHHHh
Confidence 9988764
No 96
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=8.1e-46 Score=352.34 Aligned_cols=210 Identities=26% Similarity=0.406 Sum_probs=178.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| . +..+.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~v~~~~-~-~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRY-Q-EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEc-c-CCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhH
Confidence 6789999983 2 1111257999999999999999999999999999999999998774 8999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+|+.+..++.+..|||||||||+||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 153 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIA 153 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 0146999999999999999999998865432 122333455678999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++. .+ ..+|++++|++|+++
T Consensus 154 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 154 RALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT--SFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999865555 9999999974 55 458999999999875
No 97
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.9e-45 Score=370.10 Aligned_cols=227 Identities=29% Similarity=0.397 Sum_probs=192.9
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|+++||++.| .. ..+...+|+||||+|++||+++|+|+||||||||+++|+|+++|....+|+|.++|.++..
T Consensus 10 ~~~L~i~~l~~~~-~~-~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTF-ST-PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEE-ec-CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 3468999999983 21 1134579999999999999999999999999999999999997732248999999987531
Q ss_pred -------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch---hhCccCCCCChH
Q 044030 113 -------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---AMNTRIRRLSGG 180 (449)
Q Consensus 113 -------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgG 180 (449)
..+.++||+|++ .++|.+|+.+++.+...... .....+..+++.++++.+||.+ ..++++++||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 124699999998 68899999999987654431 2344555677899999999974 357899999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+||+||+.+|++||+||||+|||+.++..+++.|++++++.|. |+|++|||+ ..+.++||++++|++|++++
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~--til~iTHdl-~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT--AIIMITHDL-GVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCC--EEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999876666 999999996 57888999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 243 ~g~~~~i~ 250 (330)
T PRK09473 243 YGNARDVF 250 (330)
T ss_pred ECCHHHHH
Confidence 99988764
No 98
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=365.30 Aligned_cols=220 Identities=25% Similarity=0.358 Sum_probs=186.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| ..+....+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 ~i~~~~l~~~~-~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIY-SPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEc-CCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 57899999983 211001256999999999999999999999999999999999999874 9999999987521
Q ss_pred -----ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHH
Q 044030 113 -----AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -----~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqR 184 (449)
.++.++|++|++ .++ .+||.||+.++.... ....++..+++.++++.+||. +..++++++||||||||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr 153 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRR 153 (287)
T ss_pred chHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHH
Confidence 124699999997 345 579999998865432 233455566789999999997 68899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++.++||++++|++|++++.|++
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~--tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGH--TVILVTHNM-DDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999974 455 999999996 578899999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 230 ~~~~ 233 (287)
T PRK13641 230 KEIF 233 (287)
T ss_pred HHHh
Confidence 8654
No 99
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-46 Score=361.30 Aligned_cols=224 Identities=28% Similarity=0.421 Sum_probs=194.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEecc----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG-S-DTRQTGKILINGHKKA---- 111 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~-~-~~~~~G~I~~~g~~~~---- 111 (449)
|+++||+++| .. ..+...+++||||++++||++||+|.|||||||+.++|+|+++ + ....+|+|.++|+++-
T Consensus 2 L~v~nL~v~f-~~-~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSF-PT-DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEE-ec-CCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 6899999984 32 2245689999999999999999999999999999999999997 3 3346799999998631
Q ss_pred -----cccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHHHcCCch---hhCccCCCCChH
Q 044030 112 -----LAYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTM-PKSDKKERAEVTIREMGLQD---AMNTRIRRLSGG 180 (449)
Q Consensus 112 -----~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgG 180 (449)
.+.+.|+||||++ .|.|.+||.+.+.-....+. .. .+++..+++.++|+.+||.+ ..+.++.+||||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGG 157 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGG 157 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCc
Confidence 1235799999996 67899999999987766532 12 35667788999999999974 679999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||.||.||+.+|++||.||||++||...+.+|+++|++++++.|. ++|++|||+ .-+.++||+|+||+.|++|+
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~--aiilITHDl-~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGT--ALILITHDL-GVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhcceEEEEECcEEEE
Confidence 999999999999999999999999999999999999999999987766 999999997 57999999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 235 ~g~~~~i~ 242 (316)
T COG0444 235 EGPVEEIF 242 (316)
T ss_pred eCCHHHHh
Confidence 99998663
No 100
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=358.27 Aligned_cols=219 Identities=24% Similarity=0.392 Sum_probs=187.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRF------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEE------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999998774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC----------CCC--CHHHHHHHHHHHHHHcCCchhhCccCCCCC
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP----------DTM--PKSDKKERAEVTIREMGLQDAMNTRIRRLS 178 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS 178 (449)
....++|++|++.+++.+||.||+.++...... ... ...+..+.+.++++.+|+.+..++++++||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 155 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLA 155 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCC
Confidence 123589999999999999999999986431100 000 112234567889999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~--tii~~sH~~-~~~~~~~d~i~~l~~g~i 232 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNV--TVLLIEHDM-KLVMGISDRIYVVNQGTP 232 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999865455 999999996 578899999999999999
Q ss_pred EEecChhhH
Q 044030 259 VYFGPATAA 267 (449)
Q Consensus 259 v~~g~~~~~ 267 (449)
++.|+++++
T Consensus 233 ~~~~~~~~~ 241 (255)
T PRK11300 233 LANGTPEEI 241 (255)
T ss_pred EecCCHHHH
Confidence 999988765
No 101
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-45 Score=362.70 Aligned_cols=218 Identities=27% Similarity=0.433 Sum_probs=189.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| . +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-~----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNY-S----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEe-C----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcch
Confidence 68999999983 1 2357999999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|++. .+...||+||+.+..... ..+..+..++++++++.+||.+..+++++.||||||||++||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHH
Confidence 1246999999973 334579999998865432 234455556789999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|++++.|+++++.
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~--tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL--TIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999865555 999999996 5688899999999999999999988764
No 102
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1e-45 Score=352.15 Aligned_cols=208 Identities=25% Similarity=0.396 Sum_probs=180.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| . +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 2 l~~~~l~~~~-~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAY-L----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEe-c----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccCChhH
Confidence 7899999983 1 235799999999999999999999999999999999999877 48999999986531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+++.+..++.+..||||||||++||+
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence 1246999999999889999999998875432 2233444556788999999999899999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||+.+|++|||||||+|||+.++..+.+.|++++++ +. |||++||++ +++..+||++++|++|+++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GV--TVLMATHDI-GLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999754 54 999999996 57888999999999999853
No 103
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=358.76 Aligned_cols=216 Identities=29% Similarity=0.485 Sum_probs=186.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++|+++.| +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 2 MLEARNLSVRL------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72 (258)
T ss_pred eEEEEeEEEEe------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHH
Confidence 47899999983 3457999999999999999999999999999999999998774 8999999986531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++|++.+++.+||+||+.+..... ....+...+.+.++++.+|+.+..++.+.+|||||||||+||+||
T Consensus 73 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 73 ELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred HhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH
Confidence 1246999999998888899999998864321 112233445678999999999999999999999999999999999
Q ss_pred H------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 192 L------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 192 ~------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+ .+|++|+|||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGL--AVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHH
Confidence 9 599999999999999999999999999999744455 999999996 5788899999999999999999887
Q ss_pred hH
Q 044030 266 AA 267 (449)
Q Consensus 266 ~~ 267 (449)
++
T Consensus 227 ~~ 228 (258)
T PRK13548 227 EV 228 (258)
T ss_pred HH
Confidence 65
No 104
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=360.12 Aligned_cols=222 Identities=27% Similarity=0.458 Sum_probs=189.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+...+|+|+++|.+...
T Consensus 4 ~l~~~nl~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 4 IIRVEKLAKTF------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77 (262)
T ss_pred EEEEeeEEEEe------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc
Confidence 58999999983 34679999999999999999999999999999999999998753347999999986521
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-----CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-----DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++.+||.||+.+......+ ........++++.++++.+|+.+..++.+..|||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 157 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQ 157 (262)
T ss_pred chhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHH
Confidence 124689999999999999999999876421100 001123345678899999999989999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGI--TVVVTLHQV-DYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999865555 999999997 468899999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|++++.
T Consensus 235 g~~~~~ 240 (262)
T PRK09984 235 GSSQQF 240 (262)
T ss_pred CCHHHh
Confidence 988653
No 105
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.2e-46 Score=351.36 Aligned_cols=200 Identities=31% Similarity=0.444 Sum_probs=172.7
Q ss_pred EEeeEEEEeecCcccc-cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--ccCc
Q 044030 40 WKDLTVTIVSNGKKGS-SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AYGT 116 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~~ 116 (449)
++|+++.| ++ +.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+... ..+.
T Consensus 2 ~~~l~~~~------~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 2 IENISFSY------KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKS 72 (205)
T ss_pred cccEEEEe------CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcc
Confidence 67888873 23 57999999999999999999999999999999999998774 8999999987532 2356
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 117 SAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 117 i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
++|++|++. .+..+|+.||+.+..... . ...+++.++++.+||.+..++++.+||||||||++||+||+.+|
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKEL---D----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 999999974 344679999998765322 1 11246789999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
+++||||||+|||+.++..+.+.|++++++ |. |||++||++ +++..+||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQ-GK--AVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999744 55 999999996 5788899999999999875
No 106
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.5e-45 Score=357.59 Aligned_cols=216 Identities=28% Similarity=0.413 Sum_probs=187.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRF------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEe------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccccc
Confidence 4689999983 3457999999999999999999999999999999999998774 8999999986521
Q ss_pred -------------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh
Q 044030 113 -------------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179 (449)
Q Consensus 113 -------------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg 179 (449)
..+.++|++|++.+++.+|+.||+.++..... ........+.+.++++.+|+.+..++.+..|||
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 149 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHMPAQLSG 149 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcChhhcCH
Confidence 13469999999999999999999988642211 123344456788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++||+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|+++
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 150 GQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDL--TMLLVTHEM-GFAREFADRVCFFDKGRIV 226 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEeCCH-HHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999865555 999999997 5788899999999999999
Q ss_pred EecChhhH
Q 044030 260 YFGPATAA 267 (449)
Q Consensus 260 ~~g~~~~~ 267 (449)
+.|+++++
T Consensus 227 ~~g~~~~~ 234 (252)
T TIGR03005 227 EQGKPDEI 234 (252)
T ss_pred EeCCHHHH
Confidence 99987655
No 107
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=358.55 Aligned_cols=216 Identities=28% Similarity=0.386 Sum_probs=186.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 5 KLNVIDLHKRY------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDK 75 (257)
T ss_pred cEEEeeeEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEccccccc
Confidence 48999999983 3467999999999999999999999999999999999998774 8999999986421
Q ss_pred --------------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-CccCCCC
Q 044030 113 --------------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-NTRIRRL 177 (449)
Q Consensus 113 --------------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~~~~L 177 (449)
..+.++|++|++.+++.+||+||+.++..... .....+.++++.++++.+|+.+.. ++++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 153 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 12469999999999999999999987542111 123344566788999999998764 8899999
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 178 SgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|+
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~--tiiivsH~~-~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGK--TMVVVTHEM-GFARHVSSHVIFLHQGK 229 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999975 455 999999996 57888999999999999
Q ss_pred EEEecChhhH
Q 044030 258 TVYFGPATAA 267 (449)
Q Consensus 258 iv~~g~~~~~ 267 (449)
+++.|++++.
T Consensus 230 i~~~~~~~~~ 239 (257)
T PRK10619 230 IEEEGAPEQL 239 (257)
T ss_pred EEEeCCHHHh
Confidence 9999988765
No 108
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=355.28 Aligned_cols=213 Identities=23% Similarity=0.419 Sum_probs=185.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+++++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHY------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEee------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHH
Confidence 58999999983 3457999999999999999999999999999999999998774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-CCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM-GLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+||.||+.++.... ......+.+.++++.+ ++.+..++++..||||||||++||+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence 1246999999999999999999998864321 1222344567778888 5888888999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|++++|||||+|||+.++..+.+.|++++++ |. |||++||++ .++.++||++++|++|++++.|+++++
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GM--TIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 999999999999999999999999999999999754 55 999999996 578999999999999999999998766
No 109
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=361.07 Aligned_cols=216 Identities=25% Similarity=0.363 Sum_probs=185.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 ml~~~~l~~~~------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 71 (271)
T PRK13638 1 MLATSDLWFRY------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRG 71 (271)
T ss_pred CeEEEEEEEEc------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCC
Confidence 37899999983 3457999999999999999999999999999999999999774 8999999987521
Q ss_pred ---ccCcEEEEcCCCCC-CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTL-ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++|++|++.. +...|+.+|+.+..... +....+..+++.++++.+|+.+..++++..||||||||++||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 72 LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred HHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHH
Confidence 12469999999753 34568999998865432 223344456688899999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGN--HVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999984 355 999999996 5788999999999999999999987653
No 110
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=8.5e-46 Score=350.11 Aligned_cols=206 Identities=30% Similarity=0.446 Sum_probs=178.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSF------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEE------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhH
Confidence 4689999983 3457999999999999999999999999999999999998774 8999999987521
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|+.||+.++..... .....+..+++.++++.+|+.+..++++.+||||||||++||+|
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 149 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 149 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHH
Confidence 12569999999999999999999988643211 22334445678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|+.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++.++||++++|++|++
T Consensus 150 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~--tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 150 LAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGM--TMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999985 455 999999996 578899999999999974
No 111
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-45 Score=367.73 Aligned_cols=223 Identities=22% Similarity=0.300 Sum_probs=192.0
Q ss_pred eEEEEeeEEEEeecCc-----ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc
Q 044030 37 FLTWKDLTVTIVSNGK-----KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~ 111 (449)
.|+++||++.| .... .+...+|+||||+|++||++||+|+||||||||+++|+|+++| .+|+|.++|.++.
T Consensus 5 ~l~v~nl~~~~-~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p---~~G~i~~~g~~l~ 80 (327)
T PRK11308 5 LLQAIDLKKHY-PVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP---TGGELYYQGQDLL 80 (327)
T ss_pred eEEEeeeEEEE-cCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEcC
Confidence 58999999984 2111 0135799999999999999999999999999999999999876 4899999998752
Q ss_pred c--------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChH
Q 044030 112 L--------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGG 180 (449)
Q Consensus 112 ~--------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgG 180 (449)
. .++.++||+|++ .+.|.+|+.+++........ .....+.++++.++++.+||. ..+++++++||||
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG 158 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence 1 135699999997 58899999999987654421 234455667889999999996 4789999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+||+||+.+|++||+||||+|||..++..++++|++++++.|. |||++|||+ ..+.++||+|++|++|++++
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~--til~iTHdl-~~~~~~adrv~vm~~G~ive 235 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL--SYVFISHDL-SVVEHIADEVMVMYLGRCVE 235 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999876666 999999996 57888999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 236 ~g~~~~~~ 243 (327)
T PRK11308 236 KGTKEQIF 243 (327)
T ss_pred ECCHHHHh
Confidence 99988764
No 112
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.4e-45 Score=353.99 Aligned_cols=217 Identities=27% Similarity=0.409 Sum_probs=186.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~i~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 2 ILYLEGLSVSF------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72 (242)
T ss_pred eEEEEeeEEEc------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHH
Confidence 47899999983 3457999999999999999999999999999999999998774 8999999986531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC--C---CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP--D---TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 185 (449)
..+.++|++|++.+++.+||.||+.+....... . ....+..+.++.++++.+|+.+..++.++.|||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred HHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 124699999999999999999999886432100 0 011233456788999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|++|+|||||+|||+.++..+++.|+++++ +. |||++||++ +++.++||++++|++|+++..|+++
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KH--SVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CC--EEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHH
Confidence 999999999999999999999999999999999999974 44 999999996 5788999999999999999999876
Q ss_pred hH
Q 044030 266 AA 267 (449)
Q Consensus 266 ~~ 267 (449)
++
T Consensus 228 ~~ 229 (242)
T TIGR03411 228 QV 229 (242)
T ss_pred HH
Confidence 54
No 113
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.9e-45 Score=351.09 Aligned_cols=215 Identities=30% Similarity=0.445 Sum_probs=178.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| . ++.....+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~v~~~~-~-~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSF-P-TGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEec-c-CCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhh
Confidence 6899999983 2 1101136999999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-HHHHHHHcCCc-hhhCccCCCCChHHHHHH
Q 044030 113 ---AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-AEVTIREMGLQ-DAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ---~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~~~~LSgGerqRv 185 (449)
.++.++|++|++ .+++.+||+||+.+....... .......+. +.++++.+++. +..++++.+|||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH
Confidence 124699999998 567789999999886543311 111122222 35889999995 688999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|+++..|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGL--TLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999865455 999999997 4778899999999999998754
No 114
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-45 Score=360.39 Aligned_cols=221 Identities=26% Similarity=0.329 Sum_probs=185.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
|.|+++||++.| .......+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~-~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 1 MGINLQNVSYTY-QAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSK 76 (280)
T ss_pred CeEEEEEEEEEc-CCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccc
Confidence 358899999983 211001246999999999999999999999999999999999998774 8999999987531
Q ss_pred ------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHH
Q 044030 113 ------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++ .+++ .||+||+.+..... ....++..++++++++.+||. ...++++.+|||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMR 152 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 124699999996 4555 69999998865432 223344456688899999997 4689999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ +++..+||++++|++|++++.|+
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGM--TIVLVTHLM-DDVANYADFVYVLEKGKLVLSGK 228 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEeccH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999975 355 999999996 57888999999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
++++.
T Consensus 229 ~~~~~ 233 (280)
T PRK13649 229 PKDIF 233 (280)
T ss_pred HHHHh
Confidence 87653
No 115
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-45 Score=356.83 Aligned_cols=217 Identities=24% Similarity=0.369 Sum_probs=185.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~- 112 (449)
..|+++|+++.| +++.+|+|+||+|++||++||+||||||||||+++|+|+.+|.. +.+|+|.++|.+...
T Consensus 11 ~~l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 11 PQIKVENLNLWY------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred eeEEEeeeEEEe------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 468999999983 34579999999999999999999999999999999999986521 258999999987521
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGer 182 (449)
..+.++|++|++.+++ +|++||+.+..... +.+.....+++.++++.+++ .+..++++..||||||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQ 160 (258)
T ss_pred cchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHH
Confidence 1246999999998888 89999999875432 22334445568889999998 3567899999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|++++.|
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DY--TIVIVTHNM-QQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999996 3 44 999999996 5788999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 236 ~~~~~ 240 (258)
T PRK14268 236 QTRQI 240 (258)
T ss_pred CHHHH
Confidence 98765
No 116
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-45 Score=360.90 Aligned_cols=218 Identities=27% Similarity=0.423 Sum_probs=188.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| . +.+.+|+||||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-~----~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSY-S----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEe-C----CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 47899999983 1 2346999999999999999999999999999999999998774 9999999987532
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. .+...||.||+.+..... ........++++++++.+||.+..+++++.||||||||++||+|
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 1246999999974 344579999998765422 23344455678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ +++.+.||++++|++|++++.|+++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~--tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGM--TVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 99999999999999999999999999999999865555 999999996 5788999999999999999999998764
No 117
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-45 Score=349.10 Aligned_cols=204 Identities=32% Similarity=0.509 Sum_probs=174.2
Q ss_pred EEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----cc
Q 044030 40 WKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AY 114 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~ 114 (449)
++|+++.| . + +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 2 ~~~l~~~~-~-~--~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 2 LKNLSFSY-P-D--GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELR 74 (211)
T ss_pred ceeEEEec-C-C--CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHH
Confidence 67888873 1 0 1257999999999999999999999999999999999998774 8999999986532 12
Q ss_pred CcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 115 GTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 115 ~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
+.++|++|++. .++.+|+.||+.+..... ........+++.++++.+||.+..++++..|||||||||+||+||+.
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 151 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAM 151 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 46999999975 366789999998865432 12233445678899999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++ .++..+||++++|++|+
T Consensus 152 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~--tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 152 DPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GK--TIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CC--EEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999854 55 999999996 57888999999999985
No 118
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.3e-45 Score=350.77 Aligned_cols=221 Identities=41% Similarity=0.683 Sum_probs=184.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--cc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AY 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~ 114 (449)
.+.++|+++.| . +..+.+.+|+|+||++++||+++|+||||||||||+++|+|++++..+.+|+|.++|.+... .+
T Consensus 3 ~~~~~~~~~~~-~-~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (226)
T cd03234 3 VLPWWDVGLKA-K-NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80 (226)
T ss_pred cceeecceeee-e-cCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhc
Confidence 46799999983 2 11114689999999999999999999999999999999999987211258999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHH-HHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV-TIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
+.++|++|++.+++.+||.||+.++.....+..........++.+ .++.+++.+..++.+++|||||+||++||+||+.
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 579999999999999999999998765432211122222334555 8999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++..++.++||++++|++|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~--tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NR--IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999754 55 99999999745789999999999999998865
No 119
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.6e-45 Score=373.80 Aligned_cols=207 Identities=25% Similarity=0.382 Sum_probs=184.7
Q ss_pred ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----cc-c--------ccCcEEE
Q 044030 53 KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK----KA-L--------AYGTSAY 119 (449)
Q Consensus 53 ~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~----~~-~--------~~~~i~y 119 (449)
++...+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|++ .. . +.+.++|
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 35678999999999999999999999999999999999999874 8999999962 21 0 1246999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEE
Q 044030 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLF 199 (449)
Q Consensus 120 v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~lll 199 (449)
|+|++.++|.+||.||+.|+.... +.+..+.++++.++++.+||.+..++++.+|||||||||+|||||+.+|++||
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999986543 23455566788999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 200 LDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 200 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|||||+|||+.++..+.+.|.+++++.++ |||++|||+ +++.++||++++|++|+++..|+++++.
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~--TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNK--TIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999865566 999999996 5789999999999999999999998764
No 120
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-45 Score=357.40 Aligned_cols=219 Identities=25% Similarity=0.406 Sum_probs=187.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
++++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 1 MTLRTENLTVGY------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSS 71 (255)
T ss_pred CEEEEEeEEEEE------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEEEECCEEhHHCCH
Confidence 358999999983 346799999999999999999999999999999999999877 48999999987421
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|+..+++.+|+.||+.++...... .........+++.++++.+|+.+..++++..|||||||||+||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 124699999999988899999999875321100 01112234456888999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++ .++.++||++++|++|+++..|++++.
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~--tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GK--TVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CC--EEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 999999999999999999999999999999999753 55 999999997 578999999999999999999988765
No 121
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-45 Score=355.05 Aligned_cols=218 Identities=22% Similarity=0.309 Sum_probs=185.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~- 112 (449)
..++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. +.+|+|+++|.+...
T Consensus 6 ~~l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFY------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEe------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 368999999983 34579999999999999999999999999999999999987621 248999999986421
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGer 182 (449)
..+.++|++|++.+++ +||+||+.+...... .......++.+.++++.+++ .+..++++++||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQ 156 (254)
T ss_pred cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHH
Confidence 1346999999988885 899999998754321 11233345678888999987 4567999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+||+||+.+|++|||||||+|||+.++..+++.|++++ + +. |||++||++ +++..+||++++|++|+++..|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SY--TIIIVTHNM-QQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999996 3 44 999999997 5788999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 232 ~~~~~ 236 (254)
T PRK14273 232 STDEL 236 (254)
T ss_pred CHHHH
Confidence 98765
No 122
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-45 Score=361.27 Aligned_cols=218 Identities=26% Similarity=0.413 Sum_probs=188.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| .. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13635 5 IIRVEHISFRY-PD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVW 77 (279)
T ss_pred eEEEEEEEEEe-CC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHH
Confidence 58999999983 21 2356999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++ .+++.+||.||+.+..... ..+.++..+++.++++.+||.+..++++..|||||||||+||+|
T Consensus 78 ~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 154 (279)
T PRK13635 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGV 154 (279)
T ss_pred HHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 134699999997 3677789999998875432 23344556678999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++. ++. .||++++|++|++++.|+++++.
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~--tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI--TVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCC--EEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999865555 9999999974 565 59999999999999999987654
No 123
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=8.5e-46 Score=350.38 Aligned_cols=209 Identities=31% Similarity=0.497 Sum_probs=175.1
Q ss_pred EEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEE
Q 044030 40 WKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAY 119 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~y 119 (449)
++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+....++.++|
T Consensus 2 ~~~l~~~~------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSY------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEE------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheEE
Confidence 67888873 3357999999999999999999999999999999999998774 89999999865322356999
Q ss_pred EcCCCCCC--CCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 120 VTQDDTLI--TTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 120 v~Q~~~l~--~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++|++.++ +.+||.||+.+........ ........+++.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99998763 3479999998864321100 01123345678899999999998999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
++||||||+|||+.++..+.+.|+++++ .|. |||++||++ +++.++||++++|++| +++.|
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRR-EGM--TILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999985 454 999999996 5788999999999876 55544
No 124
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-45 Score=354.66 Aligned_cols=219 Identities=26% Similarity=0.395 Sum_probs=186.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKA--- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~--- 111 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|++..
T Consensus 4 ~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 4 AIETVNLRVYY------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred eEEEEeEEEEe------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 58999999983 3457999999999999999999999999999999999998762 134899999998753
Q ss_pred c----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 112 L----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 112 ~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
. .++.++|++|++.+++.+||.||+.++...+. ...+.+...+++.++++.+|+. +..++++.+|||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred cChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 1 12469999999999999999999988754321 0112334445678899999984 4578899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++++|||||+|||+.++..+.+.|+++++ +. |||++||++ .++..+||++++|++|++++.|+
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EY--TIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CC--EEEEEECCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999963 34 999999996 57889999999999999999999
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 232 ~~~~ 235 (253)
T PRK14267 232 TRKV 235 (253)
T ss_pred HHHH
Confidence 8765
No 125
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.1e-45 Score=351.77 Aligned_cols=212 Identities=28% Similarity=0.403 Sum_probs=183.2
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYY------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEe------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHH
Confidence 4689999983 3457999999999999999999999999999999999999774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-CchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG-LQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|+.||+.++.... ... ..+.+.++++.++ +.+..++++.+||||||||++||+|
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHH
Confidence 1246999999999999999999998875432 111 1234567788886 6778899999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++++|||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|+++..|+++++
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM--AILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCc--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999854455 999999996 578889999999999999999988765
No 126
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=360.50 Aligned_cols=215 Identities=26% Similarity=0.388 Sum_probs=185.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++||++.| . +.+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|.+...
T Consensus 2 l~~~~l~~~~-~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSY-P----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEc-C----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHH
Confidence 7899999983 1 2356999999999999999999999999999999999998774 8999999987531
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. .+...|+.||+.+..... ..+..+..+++.++++.+||.+..++++..|||||||||+||+|
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 150 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGI 150 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHH
Confidence 1246999999975 366689999998875432 23445555678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|+++||||||+|||+.++..+++.|+++++ .|. |||++||++. ++ ..||++++|++|++++.|+++++.
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~--til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGK--TIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999974 455 9999999974 56 569999999999999999987653
No 127
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-45 Score=357.13 Aligned_cols=220 Identities=25% Similarity=0.364 Sum_probs=188.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 10 ~~l~i~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 10 TTFALRNVSFRV------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSS 80 (265)
T ss_pred ceEEEeeEEEEE------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCH
Confidence 368999999983 3457999999999999999999999999999999999998774 8999999987521
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|+..+++.+|+.||+.+........ ........++++++++.+++.+..++++++|||||||||+||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 1246999999988889999999998753211100 0111233456889999999999899999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|+++..|+++++
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~--tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGL--TVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 999999999999999999999999999999999855555 999999996 578899999999999999999988665
No 128
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-45 Score=366.35 Aligned_cols=227 Identities=21% Similarity=0.294 Sum_probs=188.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-TRQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-~~~~G~I~~~g~~~~~--- 112 (449)
.|+++||++.| .. +.+...+|+||||+|++||+++|+|+||||||||+++|+|++++. .+.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y-~~-~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEF-KT-SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEE-eC-CCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 58999999984 21 223457999999999999999999999999999999999998642 2358999999987521
Q ss_pred ------ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCC---CCHHHHHHHHHHHHHHcCCch---hhCccCCCCC
Q 044030 113 ------AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDT---MPKSDKKERAEVTIREMGLQD---AMNTRIRRLS 178 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LS 178 (449)
..+.++||+|++. +.|.+||.+++.+......... ....+.++++.++++.+||.+ .+++++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 1246999999975 6788999999976533211000 111334567889999999974 5689999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ ..+.++||++++|++|++
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~--tii~itHdl-~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNT--TILLISHDL-QMLSQWADKINVLYCGQT 237 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC--EEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999865566 999999996 578899999999999999
Q ss_pred EEecChhhHH
Q 044030 259 VYFGPATAAN 268 (449)
Q Consensus 259 v~~g~~~~~~ 268 (449)
++.|+++++.
T Consensus 238 ve~g~~~~i~ 247 (330)
T PRK15093 238 VETAPSKELV 247 (330)
T ss_pred EEECCHHHHH
Confidence 9999987653
No 129
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-45 Score=346.26 Aligned_cols=208 Identities=27% Similarity=0.440 Sum_probs=178.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
++++|+++.| +++. .|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 i~~~~l~~~~------~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSY------GEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEe------CCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhH
Confidence 4689999983 2222 3999999999999999999999999999999999774 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|++||+.+...... .. .+..++++.++++.+|+.+..++++.+||||||||++||+||+.+
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~ 146 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRD 146 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 569999999999999999999987643211 11 123455688999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|+++||||||+|||+.++..+++.|++++++.|. |||++||++ .++.++||++++|++|+++..|
T Consensus 147 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM--TVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999865555 999999996 5788999999999999998654
No 130
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.7e-45 Score=347.79 Aligned_cols=212 Identities=27% Similarity=0.371 Sum_probs=181.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
.|+++||++.| .. ......+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 6 ~l~~~~l~~~~-~~-~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 6 IVEVHHLKKSV-GQ-GEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEE 80 (228)
T ss_pred eEEEeeeEEEc-cC-CCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHH
Confidence 58999999983 21 000135999999999999999999999999999999999998774 89999999875311
Q ss_pred ------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 114 ------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 114 ------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.+.++|++|++.+++.+|+.||+.+....+ .....+.++++.++++.+++.+..++++..||||||||++|
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~l 157 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVAL 157 (228)
T ss_pred HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHH
Confidence 246999999999999999999998865432 12334455678899999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++. .+ ..||++++|++|+++.
T Consensus 158 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 158 ARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT--TLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999765555 9999999974 55 5599999999999875
No 131
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-45 Score=356.75 Aligned_cols=222 Identities=25% Similarity=0.379 Sum_probs=189.2
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
..+|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 5 ~~~l~i~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~ 75 (265)
T PRK10253 5 VARLRGEQLTLGY------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYA 75 (265)
T ss_pred ccEEEEEEEEEEE------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCC
Confidence 3478999999983 3457999999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|++.+++.+|+.||+.+......+. ....+...+++.++++.+||.+..++++..||||||||++||
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence 1246999999999999999999998753111000 001123345688999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~--tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGY--TLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999854455 999999996 5789999999999999999999987653
No 132
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-45 Score=352.64 Aligned_cols=219 Identities=27% Similarity=0.411 Sum_probs=186.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
.++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSF------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEE------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 48899999983 3457999999999999999999999999999999999998641 1358999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerqRv 185 (449)
..+.++|++|++.+++.+||.||+.++..... ......+..+.+.++++.+||. +..++.+.+|||||||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR-LVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHH
Confidence 13569999999988899999999998754321 0112344456788999999985 357899999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|+++..|+++
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DM--TIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CC--EEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHH
Confidence 99999999999999999999999999999999999996 3 44 999999997 4788899999999999999999987
Q ss_pred hH
Q 044030 266 AA 267 (449)
Q Consensus 266 ~~ 267 (449)
++
T Consensus 231 ~~ 232 (250)
T PRK14247 231 EV 232 (250)
T ss_pred HH
Confidence 65
No 133
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-45 Score=358.16 Aligned_cols=220 Identities=23% Similarity=0.374 Sum_probs=188.0
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
..+++++|+++.| . .+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 5 ~~~l~~~nl~~~~-~---~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 5 SVMIKVENVSFSY-P---NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKEN 77 (271)
T ss_pred ceEEEEEeEEEEc-C---CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCC
Confidence 3469999999983 1 12457999999999999999999999999999999999999774 8999999987532
Q ss_pred ---ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++|++|++. .++.+||+||+.+..... .....+.+.++.++++.+||.+..++++..||||||||++||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHH
Confidence 1346999999974 677789999998865432 223344556788999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+++.|++++++.+. |||++||++. ++ ..||++++|++|+++..|+++++.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~--tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKK--TLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999854334 9999999974 55 479999999999999999887653
No 134
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-45 Score=356.70 Aligned_cols=216 Identities=29% Similarity=0.453 Sum_probs=186.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| . +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSY-P----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEe-C----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchH
Confidence 7899999983 1 2346999999999999999999999999999999999999774 8999999987531
Q ss_pred --ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++. .+..+||.||+.+..... .....+..+++.++++.+||.+..++++++|||||+||++||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAG 150 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHH
Confidence 1246999999963 333469999998764321 2234445567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++++|||||+|||+.++..+++.|++++++ |. |||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~--til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GI--TIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999854 55 999999996 5788899999999999999999988764
No 135
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=6.2e-45 Score=356.08 Aligned_cols=222 Identities=25% Similarity=0.350 Sum_probs=187.4
Q ss_pred eEEEEeeEEEEeecC----cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 37 FLTWKDLTVTIVSNG----KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~----~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
+|+++||++.| ... ..+++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~-~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 2 LLEVRDVTHTY-RTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLYQ 77 (265)
T ss_pred eEEEEeEEEEe-ccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEccc
Confidence 47899999983 210 01246799999999999999999999999999999999999877 48999999987531
Q ss_pred --------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHH
Q 044030 113 --------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 --------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGe 181 (449)
..+.++|++|++ .+++.+||.||+.+...... .......++++.++++.+|+. ...++++.+|||||
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred cCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHH
Confidence 124699999996 46778999999987643211 122334456788999999996 68899999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ ..+..+||++++|++|++++.
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT--AYLFITHDL-RLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEeCCH-HHHHHHhcEEEEEeCCEEEEE
Confidence 99999999999999999999999999999999999999999865555 999999996 578889999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++++
T Consensus 233 g~~~~~ 238 (265)
T TIGR02769 233 CDVAQL 238 (265)
T ss_pred CCHHHH
Confidence 998765
No 136
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=5.1e-45 Score=351.61 Aligned_cols=218 Identities=28% Similarity=0.333 Sum_probs=182.7
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeccc---
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g~~~~~--- 112 (449)
|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+. +| .+|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSV------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEE------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCCH
Confidence 4689999983 3457999999999999999999999999999999999985 34 58999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC----CCCHHHHHHHHHHHHHHcCCc-hhhCccCC-CCChHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD----TMPKSDKKERAEVTIREMGLQ-DAMNTRIR-RLSGGQKR 183 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~LSgGerq 183 (449)
....++|++|++.+++.+|+.|++.+........ .....+..+++.++++.+||. ...++++. +|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 1234899999999999999999998765432110 012233346788999999997 56788887 59999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEec
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYFG 262 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~g 262 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ +.+... ||++++|++|++++.|
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDR--SFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCc--EEEEEEecH-HHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999974 444 999999997 467777 8999999999999999
Q ss_pred ChhhHH
Q 044030 263 PATAAN 268 (449)
Q Consensus 263 ~~~~~~ 268 (449)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 887543
No 137
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.7e-45 Score=348.57 Aligned_cols=208 Identities=29% Similarity=0.477 Sum_probs=182.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-cCc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-YGT 116 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-~~~ 116 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+.... .+.
T Consensus 1 l~l~~v~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRF------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEE------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecccccccc
Confidence 4689999983 345799999999999999999999999999999999999877 489999999875322 246
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++|++|++.+++.+|++||+.+..... ... +.++.++++.+|+++..++.+..||||||||++||+|++.+|+
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998875432 111 2457889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+++|||||+|||+.++..+.+.|+++++ .|. |||++||++ .++.++||++++|++|+++..|++.
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~--tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPE-QGI--TVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHH-CCC--EEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999974 455 999999997 5788999999999999999999864
No 138
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=353.51 Aligned_cols=220 Identities=24% Similarity=0.381 Sum_probs=186.7
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKA 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~ 111 (449)
+...++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |..+.+|+|.++|.+..
T Consensus 10 ~~~~l~~~~l~~~~------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYY------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEe------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 44568999999983 34579999999999999999999999999999999999986 22235899999998752
Q ss_pred c-------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChH
Q 044030 112 L-------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGG 180 (449)
Q Consensus 112 ~-------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgG 180 (449)
. .++.++|++|++.+++ .|++||+.+...... ..+..+..+++.++++.+++. +..++.+.+||||
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGG 160 (260)
T ss_pred ccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHH
Confidence 1 1356999999998887 799999988754321 123344456788999999973 5678899999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++..+||++++|++|+++.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DY--TVVIVTHNM-QQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999996 3 44 999999996 57888999999999999999
Q ss_pred ecChhhH
Q 044030 261 FGPATAA 267 (449)
Q Consensus 261 ~g~~~~~ 267 (449)
.|+++++
T Consensus 236 ~g~~~~~ 242 (260)
T PRK10744 236 FGNTDTI 242 (260)
T ss_pred eCCHHHH
Confidence 9988765
No 139
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-45 Score=351.72 Aligned_cols=211 Identities=27% Similarity=0.416 Sum_probs=183.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSS------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEe------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChH
Confidence 58899999983 3457999999999999999999999999999999999998774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.++|++|++.+++ .||+||+.+..... . ....++.++++.+|+. +..++.+..||||||||++||+|
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a 145 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART 145 (241)
T ss_pred HhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 1346999999998887 59999998754321 1 1234678899999996 67899999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|+++..|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 146 LANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL--TVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC--EEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999864555 999999996 578889999999999999999988765
No 140
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-45 Score=352.11 Aligned_cols=217 Identities=26% Similarity=0.362 Sum_probs=183.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.. +..+.+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 6 KMEARGLSFFY------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred EEEEeeeEEEE------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 58999999983 34579999999999999999999999999999999999864 211358999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++ .||.||+.++..... ....+...+++.++++.+|+. +..++.+.+|||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 1346999999998888 499999998754321 112233456788899999984 3568889999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|+++..|+
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RY--TIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGP 231 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CC--eEEEEEecH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999995 4 44 999999997 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 232 ~~~~ 235 (253)
T PRK14242 232 TEQI 235 (253)
T ss_pred HHHH
Confidence 8765
No 141
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-45 Score=348.63 Aligned_cols=214 Identities=25% Similarity=0.422 Sum_probs=184.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
++++||++.| +.+ ..|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..
T Consensus 2 l~~~~l~~~~------~~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLY------HHL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEE------CCc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhh
Confidence 7899999983 222 23999999999999999999999999999999998774 8999999987532 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|+.||+.+...... .. .+..++++.++++.+|+++..++++..||||||||++||+|++.+
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVRE 147 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 469999999999999999999987532110 11 223456788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++++.|++++..
T Consensus 148 p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQERQL--TLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999765555 999999996 5788899999999999999999887653
No 142
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=354.39 Aligned_cols=218 Identities=24% Similarity=0.345 Sum_probs=187.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| .. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 7 ~l~i~~l~~~~-~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 7 IIVFKNVSFQY-QS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFE 79 (269)
T ss_pred eEEEEEEEEEc-CC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 68999999983 21 1246999999999999999999999999999999999998774 8999999987531
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. +++..|+.+|+.+..... ....+...+++.++++.+|+.+..++++.+||||||||++||+|
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 156 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGV 156 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 1346999999975 677789999998875432 22334445678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|+++||||||+|||+.++..+++.|++++++.|. |||++||++. ++.. ||++++|++|++++.|+++++.
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~--tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI--TIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999754455 9999999974 5664 9999999999999999987653
No 143
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-45 Score=357.91 Aligned_cols=221 Identities=26% Similarity=0.415 Sum_probs=187.4
Q ss_pred eEEEEeeEEEEeecCc-ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGK-KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~-~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+|+++|+++.| .... .+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 4 MIKCKNVSYKY-ESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEEN 79 (280)
T ss_pred eEEEeeeEEEc-CCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccc
Confidence 58999999993 2110 01357999999999999999999999999999999999999774 8999999987531
Q ss_pred ---ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|++. .+...||.+++.|+.... ..+..+.+++++++++.+||.+..++++..||||||||++||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred HHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 1356999999974 233469999998875432 233455566789999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++. ++.. ||++++|++|+++..|+++++.
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~--tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGI--TIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999865555 9999999974 5654 9999999999999999988764
No 144
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-44 Score=347.03 Aligned_cols=215 Identities=28% Similarity=0.455 Sum_probs=188.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++|+++.| +.+.+++|+||++++|++++|+||||||||||+++|+|.++|. +|+|.++|++... ..
T Consensus 1 l~~~~l~~~~------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFY------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEe------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhh
Confidence 4689999983 3457999999999999999999999999999999999999874 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|+.||+.+..... ........+.+.++++.+|+.+..++.+..||||||||++||+||+.+
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 57999999999999999999998876543 122334456788899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++++.|+.++.
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~--tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGI--TFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999865555 999999996 578899999999999999999987655
No 145
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-45 Score=358.20 Aligned_cols=221 Identities=25% Similarity=0.389 Sum_probs=188.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| . + ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|....+|+|.++|.+...
T Consensus 5 ~l~i~~l~~~~-~-~--~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 5 IVEFKHVSFTY-P-D--SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred eEEEEEEEEEc-C-C--CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 68999999983 2 1 13469999999999999999999999999999999999997741123999999987532
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. .++..||+||+.|..... ..+.++..+++.++++.+||.+..+++++.||||||||++||+|
T Consensus 81 ~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 81 DIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 1246999999974 677789999998865432 23445556778999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++. .+ ..||++++|++|++++.|+++++.
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~--tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNL--TVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999865555 9999999974 55 579999999999999999987764
No 146
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.2e-44 Score=348.31 Aligned_cols=216 Identities=27% Similarity=0.450 Sum_probs=188.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
++++|+++.| +.+.+|+|+||++.+||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..
T Consensus 1 i~i~~l~~~~------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRF------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRIRLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEE------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCChhh
Confidence 4689999983 345799999999999999999999999999999999999876 48999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.++.|||||+||++||++|+.+
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 56999999999999999999998876533 122333446678999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|++++|||||+|||+.++..+.+.|++++++.++ |||++||++ .++.++||++++|++|++++.|+.+++.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~--tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV--TTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999854455 999999996 5788999999999999999999987653
No 147
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=349.63 Aligned_cols=218 Identities=23% Similarity=0.347 Sum_probs=184.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|++++..+.+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFY------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEE------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 57899999983 34579999999999999999999999999999999999975322458999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerqRv~i 187 (449)
..+.++|++|++.+++ .|++||+.++...+. ........++++.++++.+++. +..++.+.+|||||||||+|
T Consensus 76 ~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 1346999999998887 699999988754321 0001233445678899999994 45688899999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ +++.++||++++|++|++++.|++++.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NL--SMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CC--EEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999986 3 45 999999996 578899999999999999999988765
No 148
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=358.72 Aligned_cols=220 Identities=21% Similarity=0.283 Sum_probs=184.6
Q ss_pred eEEEEeeEEEEeecCcc-cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKK-GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
.|+++||++.| . ++. ....+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 6 ~l~i~nl~~~~-~-~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTY-A-KKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEe-C-CCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccccc
Confidence 48999999983 2 110 0135999999999999999999999999999999999999774 8999999986420
Q ss_pred -------ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHH
Q 044030 113 -------AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGer 182 (449)
.++.++|++|++. +++ .|++||+.|..... .....+..+++.++++.++|. +..++++..||||||
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHH
Confidence 1246999999973 344 59999998865422 223344456678899999994 788999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ +++.++||++++|++|++++.|
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK--RIIMVTHNM-DQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999865555 999999996 5788999999999999999999
Q ss_pred ChhhHH
Q 044030 263 PATAAN 268 (449)
Q Consensus 263 ~~~~~~ 268 (449)
+++++.
T Consensus 234 ~~~~~~ 239 (289)
T PRK13645 234 SPFEIF 239 (289)
T ss_pred CHHHHh
Confidence 987653
No 149
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.1e-44 Score=354.72 Aligned_cols=222 Identities=23% Similarity=0.379 Sum_probs=187.8
Q ss_pred eEEEEeeEEEEeecCc----ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 37 FLTWKDLTVTIVSNGK----KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~----~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
+|+++||+++| .... .+.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~ 79 (267)
T PRK15112 4 LLEVRNLSKTF-RYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHF 79 (267)
T ss_pred eEEEeceEEEe-cCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCC
Confidence 58999999983 2100 12357999999999999999999999999999999999999774 8999999987532
Q ss_pred -----ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHH
Q 044030 113 -----AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqR 184 (449)
..+.++|++|++. +++.+|+.+++.+...... .....+..+.+.++++.+|+. +..++++.+||||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 157 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQR 157 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHH
Confidence 1246999999975 6788899999988654421 123334456788999999994 67889999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|+++..|++
T Consensus 158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 234 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGI--SYIYVTQHL-GMMKHISDQVLVMHQGEVVERGST 234 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc--EEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999865555 999999997 578889999999999999999987
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 235 ~~~ 237 (267)
T PRK15112 235 ADV 237 (267)
T ss_pred HHH
Confidence 765
No 150
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=351.57 Aligned_cols=218 Identities=27% Similarity=0.374 Sum_probs=185.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~-- 112 (449)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. +.+|+|.++|.+...
T Consensus 4 ~l~i~~v~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYY------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEE------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 58999999983 34579999999999999999999999999999999999986421 258999999987521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++.+||.||+.++...+. .......++++.++++.+|+. +..++.+.+|||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 12469999999999999999999988764321 112344456788899999984 5678999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee------CCe
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS------AGQ 257 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~------~G~ 257 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|+ +|+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DY--TIVIVTHNM-QQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CC--EEEEEecCH-HHHHHhCCEEEEEecccCCCCce
Confidence 9999999999999999999999999999999999999996 3 34 999999996 57889999999997 799
Q ss_pred EEEecChhhH
Q 044030 258 TVYFGPATAA 267 (449)
Q Consensus 258 iv~~g~~~~~ 267 (449)
+++.|+++++
T Consensus 231 i~~~~~~~~~ 240 (258)
T PRK14241 231 LVEIDDTEKI 240 (258)
T ss_pred EEecCCHHHH
Confidence 9999998765
No 151
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1e-44 Score=352.65 Aligned_cols=217 Identities=28% Similarity=0.432 Sum_probs=185.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSA------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEE------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHH
Confidence 6789999983 3457999999999999999999999999999999999998774 8999999987532
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++|++.+++.+||.||+.++...... ......+..+++.++++.+++.+..++++..||||||||++||+||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL 152 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 124699999998888889999999875321000 0111223345688999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+.+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++ ..+.++||++++|++|+++..|++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGV--TVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 999999999999999999999999999999974 455 999999997 578899999999999999999988764
No 152
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=367.99 Aligned_cols=207 Identities=27% Similarity=0.438 Sum_probs=182.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|++ ||+++| +++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~-~l~k~~------~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~ 69 (352)
T PRK11144 2 LEL-NFKQQL------GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGI 69 (352)
T ss_pred eEE-EEEEEe------CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccccc
Confidence 566 888873 2333 3 899999999999999999999999999999999774 8999999986421
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|+..+++.+||+||+.|+.. ....++++++++.+||.+..++++.+|||||||||+||
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvala 140 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIG 140 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHH
Confidence 13579999999999999999999988642 11235688999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 141 raL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~--tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 141 RALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI--PILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--eEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999866555 999999996 5789999999999999999999998764
No 153
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-44 Score=348.94 Aligned_cols=218 Identities=24% Similarity=0.375 Sum_probs=185.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |..+.+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 4 KVKLEQLNVHF------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred EEEEEEEEEEe------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 47999999983 34579999999999999999999999999999999999985 322358999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++.+|+.||+.+...... .....+.++++.++++.+++. +..++.+..|||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred CChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 13569999999999999999999987654321 112334456688899999985 3567889999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ +++.++||++++|++|+++..|+
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KY--TIIIVTHNM-QQAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CC--cEEEEECCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999973 34 999999996 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
+++.
T Consensus 231 ~~~~ 234 (252)
T PRK14256 231 TKKI 234 (252)
T ss_pred HHHH
Confidence 8765
No 154
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-44 Score=346.35 Aligned_cols=214 Identities=27% Similarity=0.473 Sum_probs=187.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++|+++.| +. ++|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~------~~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDW------KE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEe------CC-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhH
Confidence 4688999883 22 3899999999999999999999999999999999998774 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+||.+..+++++.||||||||++||+||+.+
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 147 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVN 147 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence 57999999999999999999998875332 223344556678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|++++|||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|+++..|++++.
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~--tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGV--TVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999765565 999999996 578889999999999999999987655
No 155
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-44 Score=351.19 Aligned_cols=218 Identities=24% Similarity=0.353 Sum_probs=184.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS--DTRQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~--~~~~~G~I~~~g~~~~~- 112 (449)
..|+++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ..+.+|+|.++|++...
T Consensus 11 ~~l~i~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 11 EVYQINGMNLWY------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred ceEEEeeEEEEE------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 368999999983 345799999999999999999999999999999999999863 21248999999987531
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGer 182 (449)
.++.++|++|++.+++. ||+||+.+...... .....+..++++++++.+++. +..++.+.+||||||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred ccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 12469999999988886 99999988754321 112334456678889999985 357889999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++||++|+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ +++.++||++++|++|+++..|
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KY--TIVIVTHNM-QQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CC--EEEEEEcCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999996 3 44 999999996 5788999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 237 ~~~~~ 241 (259)
T PRK14274 237 DTNKM 241 (259)
T ss_pred CHHHH
Confidence 98765
No 156
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.1e-44 Score=368.25 Aligned_cols=208 Identities=31% Similarity=0.466 Sum_probs=182.1
Q ss_pred eeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---------
Q 044030 42 DLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--------- 112 (449)
Q Consensus 42 nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--------- 112 (449)
||++.| +++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 4 ~l~~~~------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRL------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEE------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccch
Confidence 777772 3334 4 999999999999999999999999999999999774 8999999987521
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.++.++|++|++.+++.+||+||+.|+.... ...+.+++++++++.+||.+..++++.+|||||||||+||+||+
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 1356999999999999999999999875421 12334556889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ +++..+||++++|++|+++..|+++++.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~--tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI--PILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999999999865555 999999996 5788999999999999999999987764
No 157
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-44 Score=348.52 Aligned_cols=218 Identities=24% Similarity=0.326 Sum_probs=183.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEeccc
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~---~~~~~~~G~I~~~g~~~~~ 112 (449)
+.|+++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+. ++ .+.+|+|.++|.+...
T Consensus 2 ~~l~~~~~~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWY------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA-TRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEE------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC-CCCceEEEECCEeccc
Confidence 468999999983 3467999999999999999999999999999999999973 33 1248999999987531
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++ .|+.||+.++...+. ........+.++++++.+|+. +..++++..|||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 151 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQ 151 (250)
T ss_pred ccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHH
Confidence 1246999999998887 599999988754321 111233445678899999985 35788899999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|++++.
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DY--TIVIVTHNM-QQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEeCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999995 4 44 999999996 478899999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|+++++.
T Consensus 227 ~~~~~~~ 233 (250)
T PRK14245 227 DDTKKIF 233 (250)
T ss_pred CCHHHHh
Confidence 9987763
No 158
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=6.9e-45 Score=348.59 Aligned_cols=200 Identities=28% Similarity=0.464 Sum_probs=174.2
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHH
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYY 138 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 138 (449)
|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+........+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 5799999999999999999999999999999999877 4899999998764322235899999999999999999988
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 044030 139 SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218 (449)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~ 218 (449)
......+ .....+.++++.++++.+|+.+..++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.+.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 6431111 223344456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 219 l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
|++++++.|. |||++||++ .++.++||++++|++|+++..|++.
T Consensus 157 l~~~~~~~~~--tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 157 LMQIWEEHRV--TVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHhcCC--EEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence 9999865555 999999996 5788999999999999999888654
No 159
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=9.9e-45 Score=348.80 Aligned_cols=200 Identities=27% Similarity=0.438 Sum_probs=174.4
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----ccCcEEEEc-CCCCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----AYGTSAYVT-QDDTLIT 128 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~~~~i~yv~-Q~~~l~~ 128 (449)
+.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+... ..+.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 5568999999999999999999999999999999999998774 8999999986421 124699998 5567888
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD 208 (449)
.+|++|++.+....+ .....+..+++.++++.+|+.+..++++..||||||||++||+||+.+|+++||||||+|||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999999998876543 22334445667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 209 ~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+.++..+.+.|++++++.+. |||++||++ +++..+||++++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGT--TVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCC--EEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999865555 999999997 5788999999999999998765
No 160
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.3e-44 Score=340.79 Aligned_cols=209 Identities=23% Similarity=0.387 Sum_probs=180.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
++++||++.| + .+++|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..
T Consensus 1 ~~~~~l~~~~------~--~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 69 (213)
T TIGR01277 1 LALDKVRYEY------E--HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQ 69 (213)
T ss_pred CeEEeeeEEe------C--CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhc
Confidence 4689999983 1 2568999999999999999999999999999999999774 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|+.||+.+...... . .....++++.++++.+|+.+..++.+.+||||||||++||+||+.+
T Consensus 70 ~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 146 (213)
T TIGR01277 70 RPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRP 146 (213)
T ss_pred cceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 569999999999999999999987643211 1 1122345678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++++|||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|+++..|.
T Consensus 147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~--tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQR--TLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999855555 999999996 57788999999999999998874
No 161
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-44 Score=347.11 Aligned_cols=217 Identities=25% Similarity=0.362 Sum_probs=182.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYY------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEE------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 58999999983 34579999999999999999999999999999999999853 421248999999987521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++ +||.||+.+..... + .......++++.++++.+++. +..++.+.+|||||||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQ 155 (252)
T ss_pred cchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHH
Confidence 1346999999998887 79999998875432 1 111233445678889999874 4578899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ +++..+||++++|++|++++.|+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DY--TMLLVTRSM-QQASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CC--eEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999996 3 34 999999996 57889999999999999999999
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 231 ~~~~ 234 (252)
T PRK14239 231 TKQM 234 (252)
T ss_pred HHHH
Confidence 8765
No 162
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-44 Score=350.38 Aligned_cols=218 Identities=27% Similarity=0.357 Sum_probs=184.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. .+.+|+|+++|++...
T Consensus 19 ~l~~~nl~~~~------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 19 KMRARDVSVFY------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred eEEEEeEEEEE------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 68999999983 3457999999999999999999999999999999999998641 1358999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch----hhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD----AMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++. ||.||+.+....+. ...+..+..+++.++++.+|+.+ ..++.+.+|||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 12469999999988875 99999998754321 01122334566888999999953 568889999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ ..+..+||++++|++|+++..|+
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~--tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NY--TIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CC--eEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999963 44 999999996 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 246 ~~~~ 249 (267)
T PRK14235 246 TEKM 249 (267)
T ss_pred HHHH
Confidence 8765
No 163
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-44 Score=349.27 Aligned_cols=226 Identities=24% Similarity=0.356 Sum_probs=189.0
Q ss_pred ccccCCCCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEE
Q 044030 27 LINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKIL 104 (449)
Q Consensus 27 ~~~~~~~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~ 104 (449)
.+..|. ....|+++||++.| +.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. .+.+|+|.
T Consensus 11 ~~~~~~-~~~~l~~~nl~~~~------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 11 IITFPE-EEIALSTKDLHVYY------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred eEecCC-CCeEEEEeeEEEEE------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 334443 34579999999983 3467999999999999999999999999999999999998641 13589999
Q ss_pred ECCEeccc-------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCcc
Q 044030 105 INGHKKAL-------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTR 173 (449)
Q Consensus 105 ~~g~~~~~-------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ 173 (449)
++|.+... ..+.++|++|++.+++ .||+||+.++.... + .......+.++.++++.++|. +..+++
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~ 160 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLHKS 160 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhcCC
Confidence 99987531 1346999999998887 59999998875432 1 112334456688899999984 467899
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 174 ~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
+.+||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|
T Consensus 161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tiii~tH~~-~~~~~~~d~i~~l 235 (267)
T PRK14237 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NY--TIIIVTHNM-QQAARASDYTAFF 235 (267)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CC--EEEEEecCH-HHHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999999996 3 44 999999997 4788999999999
Q ss_pred eCCeEEEecChhhH
Q 044030 254 SAGQTVYFGPATAA 267 (449)
Q Consensus 254 ~~G~iv~~g~~~~~ 267 (449)
++|++++.|+++++
T Consensus 236 ~~G~i~~~g~~~~~ 249 (267)
T PRK14237 236 YLGDLIEYDKTRNI 249 (267)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998765
No 164
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-44 Score=347.51 Aligned_cols=218 Identities=22% Similarity=0.355 Sum_probs=185.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~- 112 (449)
..++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. .+.+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 3 IKMESKNLNLWY------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred cEEEEEEeEEEE------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 368999999983 3457999999999999999999999999999999999998641 1258999999987531
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGer 182 (449)
..+.++|++|++.+++ +|++||+.|...... .....+..+++.++++.+++. +..++++.+||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 77 DVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred cccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 1346999999998887 899999998754321 112334455678899999874 467889999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|++++.|
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~--tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EY--TIVIVTHNM-QQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CC--eEEEEEcCH-HHHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999974 34 999999996 5788999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 229 ~~~~~ 233 (251)
T PRK14270 229 KTEKI 233 (251)
T ss_pred CHHHH
Confidence 98765
No 165
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-44 Score=350.00 Aligned_cols=220 Identities=23% Similarity=0.337 Sum_probs=183.7
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKA 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~ 111 (449)
....++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+ +..+.+|+|.++|++..
T Consensus 18 ~~~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 18 KEHILEVKDLSIYY------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCceEEEEEEEEEe------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 33468999999983 34679999999999999999999999999999999999864 21135899999998753
Q ss_pred c-------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChH
Q 044030 112 L-------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGG 180 (449)
Q Consensus 112 ~-------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgG 180 (449)
. ..+.++|++|++.+++. |+.||+.+...... .......++.+.+.++.+++. +..++++.+||||
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 168 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGG 168 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHH
Confidence 1 13469999999988885 99999988654321 111223345577788888884 5678999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|++++
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~--tiii~tH~~-~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EY--SIIIVTHNM-QQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CC--EEEEEEeCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999963 34 999999996 57889999999999999999
Q ss_pred ecChhhH
Q 044030 261 FGPATAA 267 (449)
Q Consensus 261 ~g~~~~~ 267 (449)
.|+++++
T Consensus 244 ~~~~~~~ 250 (268)
T PRK14248 244 YDQTEQI 250 (268)
T ss_pred eCCHHHH
Confidence 9988765
No 166
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-45 Score=327.97 Aligned_cols=220 Identities=31% Similarity=0.461 Sum_probs=196.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.+.+.+++.+| .+ ..+.+|+|||++|.+||.++++||||||||||||+++|+.+|. .|+|.+||++++-....
T Consensus 3 ~l~~~~~sl~y--~g--~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgae 75 (259)
T COG4525 3 MLNVSHLSLSY--EG--KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAE 75 (259)
T ss_pred eeehhheEEec--CC--cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCcc
Confidence 35677888873 12 2256999999999999999999999999999999999999884 89999999987655455
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
-|.|||++.++|.+||.+|+.|+.+++ ++++.++.+++.+.+..+||++..++++-+|||||||||.|||||+.+|+
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 689999999999999999999999886 67888899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee--CCeEEEecChhhHHH
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS--AGQTVYFGPATAANE 269 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~--~G~iv~~g~~~~~~~ 269 (449)
+|+||||+++||.-+++++.++|-+++++.|+ .++++||+. +|+.-+++++++|+ .|+++..-+++-.+.
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk--~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df~rR 224 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGK--QVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDFARR 224 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCC--eEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCHHHH
Confidence 99999999999999999999999999988866 999999997 57788999999998 479998877764333
No 167
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.9e-44 Score=348.32 Aligned_cols=217 Identities=25% Similarity=0.355 Sum_probs=184.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----cc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-----KA 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-----~~ 111 (449)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+ ..
T Consensus 6 ~l~~~~l~~~~------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLY------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEc------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccc
Confidence 58999999983 3357999999999999999999999999999999999998774 8999999986 42
Q ss_pred c---------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCCh
Q 044030 112 L---------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSG 179 (449)
Q Consensus 112 ~---------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg 179 (449)
. ..+.++|++|++ .+++.+|+.||+.+...... .....+.+..+.++++.+++. ...++.+..|||
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 154 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLPTTFSG 154 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCH
Confidence 1 123599999997 36778899999976542211 111223456688999999997 478999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ ..+..+||++++|++|+++
T Consensus 155 Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~isH~~-~~~~~~~d~i~~l~~g~i~ 231 (258)
T PRK11701 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL--AVVIVTHDL-AVARLLAHRLLVMKQGRVV 231 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEeCCH-HHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999865555 999999996 5788899999999999999
Q ss_pred EecChhhH
Q 044030 260 YFGPATAA 267 (449)
Q Consensus 260 ~~g~~~~~ 267 (449)
+.|+++++
T Consensus 232 ~~~~~~~~ 239 (258)
T PRK11701 232 ESGLTDQV 239 (258)
T ss_pred EeCCHHHH
Confidence 99988765
No 168
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-44 Score=352.89 Aligned_cols=221 Identities=27% Similarity=0.384 Sum_probs=185.2
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeccc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT-----RQTGKILINGHKKAL 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~-----~~~G~I~~~g~~~~~ 112 (449)
|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 2 l~~~nl~~~~------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~ 75 (272)
T PRK13547 2 LTADHLHVAR------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75 (272)
T ss_pred eEEEEEEEEE------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEccc
Confidence 7899999983 34579999999999999999999999999999999999987630 027999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 186 (449)
..+.++|++|++.+++.+||.||+.+....... ......+..+.+.++++.+|+.+..++++..|||||||||+
T Consensus 76 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (272)
T PRK13547 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQ 155 (272)
T ss_pred CCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 124589999998766678999999875321100 01111234456888999999999999999999999999999
Q ss_pred HHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 187 ISIEIL---------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 187 ia~aL~---------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
||+||+ .+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|+
T Consensus 156 laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tviiisH~~-~~~~~~~d~i~~l~~G~ 232 (272)
T PRK13547 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNL--GVLAIVHDP-NLAARHADRIAMLADGA 232 (272)
T ss_pred HHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCC--EEEEEECCH-HHHHHhCCEEEEEECCe
Confidence 999999 599999999999999999999999999999865455 999999997 57888999999999999
Q ss_pred EEEecChhhH
Q 044030 258 TVYFGPATAA 267 (449)
Q Consensus 258 iv~~g~~~~~ 267 (449)
+++.|+++++
T Consensus 233 i~~~g~~~~~ 242 (272)
T PRK13547 233 IVAHGAPADV 242 (272)
T ss_pred EEEecCHHHH
Confidence 9999988765
No 169
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-44 Score=345.05 Aligned_cols=217 Identities=24% Similarity=0.374 Sum_probs=183.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS--DTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~--~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.++ ..+.+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFY------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEE------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 47899999983 345799999999999999999999999999999999998753 11248999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++ +|+.||+.+...... ..+....++.+.++++.+++. +..++++.+|||||||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ 153 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH
Confidence 1346999999998887 899999998754321 112334456788889998874 4568899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ ..+..+||++++|++|+++..|+
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DY--TIVIVTHNM-QQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999996 3 44 999999996 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 229 ~~~~ 232 (250)
T PRK14240 229 TVDL 232 (250)
T ss_pred HHHH
Confidence 8765
No 170
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-44 Score=339.63 Aligned_cols=201 Identities=26% Similarity=0.421 Sum_probs=174.9
Q ss_pred eeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---------
Q 044030 42 DLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--------- 112 (449)
Q Consensus 42 nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--------- 112 (449)
||+++| +++.+ |+||++++ |+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 5 DIEKRL------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPP 72 (214)
T ss_pred eeeEec------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhh
Confidence 888873 34445 99999999 999999999999999999999999774 8999999986421
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
..+.++|++|++.+++.+|+.||+.+..... .....++++.++++.+|+.+..++++.+||||||||++||+||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred HhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHh
Confidence 1246999999999999999999998765321 22334566889999999998899999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
.+|++++|||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|+++..|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI--PVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc--EEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999865555 999999996 5788899999999999998765
No 171
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-44 Score=345.12 Aligned_cols=218 Identities=24% Similarity=0.383 Sum_probs=184.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
+|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. .+.+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYY------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEe------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 58999999983 3457999999999999999999999999999999999998641 1258999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++ +|++||+.+...... .......++.+.++++.+++. +..++.+.+|||||||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQ 153 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHH
Confidence 1356999999998887 899999988754321 112233445678889999885 3578999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ +.+..+||++++|++|+++..|+
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NY--TIVIVTHNI-GQAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-Cc--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999996 3 44 999999996 46889999999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 87653
No 172
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-44 Score=382.57 Aligned_cols=220 Identities=25% Similarity=0.402 Sum_probs=189.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++|++++| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +.+|+|.++|.+...
T Consensus 5 ~l~~~nl~~~~------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 5 LLEMKNITKTF------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIR 77 (506)
T ss_pred eEEEeeeEEEe------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHH
Confidence 58999999983 3457999999999999999999999999999999999998751 258999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.++||+|++.+++.+||+||+.++...+.....+..+..++++++++.+|+.+..++++.+|||||||||+||+|
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 124699999999999999999999887543210112233445678899999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~--tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGI--ACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999974 455 999999996 578899999999999999999987654
No 173
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=382.38 Aligned_cols=218 Identities=21% Similarity=0.346 Sum_probs=188.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||+++| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAF------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEe------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999999774 8999999987531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+||+||+.++...+.. ...+..+.++++.++++.+||.+..++++.+|||||||||+||+
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHH
Confidence 124699999999999999999999886432210 11223344567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++|||+ .++..+||++++|++|+++..|+++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~--tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGR--GIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999999999999999974 455 999999996 578899999999999999999987653
No 174
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-44 Score=336.64 Aligned_cols=196 Identities=33% Similarity=0.588 Sum_probs=166.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++|+||+|.| ..+ ++++.+|+|+||++++||+++|+||||||||||+++|+|+++|..+.+|+|.++|.+...
T Consensus 3 ~~~~~~~~~~~-~~~-~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTT-GKG-RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEe-ccC-CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 57999999994 322 246789999999999999999999999999999999999987422369999999987532
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
..+.++|++|++.+++.+||+||+.++.... .++++..||||||||++||+||+
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 2356999999999999999999998753210 56788999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
.+|+++||||||+|||+.++..+++.|++++++.+. |+|+++|+...++.+.||++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~--t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT--TTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCC--EEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999865444 77776665446788999999999999998764
No 175
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-44 Score=344.85 Aligned_cols=220 Identities=27% Similarity=0.395 Sum_probs=184.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~- 112 (449)
+.++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 3 LLLSAQDVNIYY------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEEeeeEEEE------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccC
Confidence 368999999983 34579999999999999999999999999999999999987631 137999999987531
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGer 182 (449)
.++.++|++|++.+++.+|+.||+.+...... ....++..+.+.++++.+++ .+..+++++.||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence 12469999999999999999999987654321 11223334556777777765 3567889999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ ..+..+||++++|++|++++.|
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VT--TIIIVTHNM-HQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999996 3 34 999999997 5788899999999999999999
Q ss_pred ChhhHH
Q 044030 263 PATAAN 268 (449)
Q Consensus 263 ~~~~~~ 268 (449)
+++++.
T Consensus 230 ~~~~~~ 235 (252)
T PRK14272 230 PTDQLF 235 (252)
T ss_pred CHHHHH
Confidence 987653
No 176
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-44 Score=350.18 Aligned_cols=218 Identities=22% Similarity=0.386 Sum_probs=183.2
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~ 112 (449)
...|+++||++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|++++.. +.+|+|.++|.+...
T Consensus 11 ~~~l~i~nl~~~~------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISY------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEE------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4579999999983 34579999999999999999999999999999999999976311 358999999987421
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGe 181 (449)
.++.++|++|++.+++. ||+||+.+..... ... ...++++.++++.+++ .+..++++.+|||||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 159 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQ 159 (269)
T ss_pred ccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHH
Confidence 12469999999988885 9999998876432 112 2234556778888876 456789999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC------
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA------ 255 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~------ 255 (449)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++..+||++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~--tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~ 234 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NF--TIVIVTHNM-QQAVRVSDMTAFFNAEEVEGG 234 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CC--EEEEEeCCH-HHHHHhcCEEEEEeccccccc
Confidence 999999999999999999999999999999999999999996 3 34 999999996 578999999999996
Q ss_pred -----CeEEEecChhhHH
Q 044030 256 -----GQTVYFGPATAAN 268 (449)
Q Consensus 256 -----G~iv~~g~~~~~~ 268 (449)
|++++.|+++++.
T Consensus 235 ~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 235 SGGKVGYLVEFNETKKIF 252 (269)
T ss_pred cccccceEEEeCCHHHHH
Confidence 6789999987764
No 177
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.2e-45 Score=322.98 Aligned_cols=212 Identities=31% Similarity=0.443 Sum_probs=188.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA----- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~----- 111 (449)
.|++++++++ +.. ..+...||++|++.|++||-+||+|||||||||||-+++|+..|+ +|+|.+.|++..
T Consensus 6 ii~~~~l~kt-vg~-~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd 80 (228)
T COG4181 6 IIEVHHLSKT-VGQ-GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDED 80 (228)
T ss_pred eeehhhhhhh-hcC-CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHH
Confidence 5788999888 432 235678999999999999999999999999999999999998774 999999998742
Q ss_pred ----cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 112 ----LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 112 ----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.+.+++|+|||...++|+||..||+...+.+.. -+..+....+.++|+.+||.+.++.+|++|||||+|||+|
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g---e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcC---CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHH
Confidence 134689999999999999999999999888762 2344556678899999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||++..|++||.||||-+||..+..+|.++|-.+.++.|. |.|++|||| .+..-|||.+-|..|+++.
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~--TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGT--TLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCc--eEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999999999999999999999999999999999988766 999999997 4788899999999999874
No 178
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-44 Score=344.86 Aligned_cols=217 Identities=25% Similarity=0.372 Sum_probs=181.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc---
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~--- 112 (449)
-+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|++...
T Consensus 6 ~~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWY------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEE------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 3688999883 34579999999999999999999999999999999999975 211358999999986421
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch----hhCccCCCCChHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD----AMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSgGerqR 184 (449)
.++.++|++|++.+++. |+.||+.+....+. ........++.+.++++.+|+.+ ..++.+.+||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR 157 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence 13469999999988886 99999988743321 11122334456788999999964 5678899999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|++++.|++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 232 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NF--TIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTT 232 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999985 3 44 999999997 478889999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 233 ~~~ 235 (251)
T PRK14244 233 QEI 235 (251)
T ss_pred HHH
Confidence 765
No 179
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6.2e-44 Score=339.53 Aligned_cols=210 Identities=30% Similarity=0.469 Sum_probs=180.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . .+.+.+.+|+|+||++++|++++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~-~-~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYY-G-HGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV---QEGSLKVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEc-c-CCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEhHhcCHhH
Confidence 6889999983 2 111236799999999999999999999999999999999999877 48999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+|+.||+.++..... .....+..+.+.++++.+||.+..++++.+||||||||++||+
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHH
Confidence 13569999999999999999999998765431 1234445567899999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+|+.+|++++|||||+|||+.++..+.+.|++++++.+. |||++||++ . +.++||++++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC--TILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999864555 999999996 3 5689999999999986
No 180
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-43 Score=349.73 Aligned_cols=219 Identities=23% Similarity=0.342 Sum_probs=187.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| . + ...+.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-~-~-~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKY-E-K-ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE---FEGKVKIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEc-C-C-CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCCEEEECCEECCcCCHH
Confidence 58999999983 2 1 1124599999999999999999999999999999999999977 48999999987531
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. .++..||.||+.++.... .....+..++++++++.+||.+..++++..||||||||++||+|
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAra 154 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGI 154 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 1356999999974 577789999998865422 22344445678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++. ++. .||++++|++|+++..|+++++.
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL--TVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999865566 9999999974 564 69999999999999999987754
No 181
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=343.56 Aligned_cols=219 Identities=24% Similarity=0.352 Sum_probs=182.4
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~ 112 (449)
+.+|+++||++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|.+...
T Consensus 3 ~~~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 3 KKIITSSDVHLFY------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred cceEEEEeEEEEE------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 3468999999983 34579999999999999999999999999999999999864 321248999999986521
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++ .|+.||+.+...... .......++.+.+.++.+++ .+..++.+.+|||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq 153 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQ 153 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHH
Confidence 1356999999998888 699999988754321 01122233456777888876 356788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|+++..
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 154 QQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QY--TIILVTHSM-HQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999974 34 999999996 578899999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|++.+.
T Consensus 229 ~~~~~~ 234 (252)
T PRK14255 229 ADTKQM 234 (252)
T ss_pred CCHHHH
Confidence 988765
No 182
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=343.83 Aligned_cols=217 Identities=25% Similarity=0.384 Sum_probs=182.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++ |..+.+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSY------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEE------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 58999999983 34579999999999999999999999999999999999986 211258999999987521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++ .||+||+.+...... ........+.+.++++.+++. ..+++.+.+|||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred chHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 1346999999998886 699999988654321 112223345678889999984 5578899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|+++..|+
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QY--TFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CC--eEEEEECCH-HHHHhhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999996 3 34 999999996 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 230 ~~~~ 233 (251)
T PRK14251 230 TEEM 233 (251)
T ss_pred HHHH
Confidence 8765
No 183
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=345.72 Aligned_cols=217 Identities=27% Similarity=0.381 Sum_probs=184.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR--QTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~--~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|++++..+ .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 7 AIKVKDLSFYY------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred eEEEEEEEEEE------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 58999999983 345799999999999999999999999999999999999875312 48999999986521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++ +|++||+.++..... ..+.....+.+.++++.+++ .+..++.+.+|||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQ 157 (259)
T ss_pred cchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 1246999999999887 899999988754321 12233344567888999988 35678999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee-----CCeE
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS-----AGQT 258 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~-----~G~i 258 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ +++.++||++++|+ +|++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~--tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--EL--TIAIVTHNM-QQATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CC--EEEEEeCCH-HHHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999963 34 999999997 57899999999998 5999
Q ss_pred EEecChhhH
Q 044030 259 VYFGPATAA 267 (449)
Q Consensus 259 v~~g~~~~~ 267 (449)
++.|+++++
T Consensus 233 ~~~~~~~~~ 241 (259)
T PRK14260 233 VEFGVTTQI 241 (259)
T ss_pred EEeCCHHHH
Confidence 999998876
No 184
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-44 Score=380.99 Aligned_cols=218 Identities=23% Similarity=0.380 Sum_probs=188.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSF------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEc------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHH
Confidence 58999999983 3457999999999999999999999999999999999999774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC-CCC---CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL-PDT---MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 186 (449)
..+.++||+|++.+++.+||+||+.++..... ..+ .+..+.++++.++++.+||.+..++++.+|||||||||+
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 12469999999999999999999987542110 001 122344567889999999999899999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++ .++..+||++++|++|++++.|++++
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~--tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GT--AIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhh
Confidence 999999999999999999999999999999999999854 55 999999996 57889999999999999999998875
Q ss_pred H
Q 044030 267 A 267 (449)
Q Consensus 267 ~ 267 (449)
+
T Consensus 232 ~ 232 (510)
T PRK09700 232 V 232 (510)
T ss_pred C
Confidence 4
No 185
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.9e-44 Score=369.74 Aligned_cols=226 Identities=27% Similarity=0.441 Sum_probs=197.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-TRQTGKILINGHKKA---- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-~~~~G~I~~~g~~~~---- 111 (449)
.|+++||+++|.. ..+...+++||||++.+||++||+|.|||||||+.++|.|++++. ...+|+|.++|.+..
T Consensus 5 lL~V~nL~v~~~~--~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFAT--DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEec--CCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 6899999999432 223457999999999999999999999999999999999999875 345899999998531
Q ss_pred -----cccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhC--ccCCCCChHHH
Q 044030 112 -----LAYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN--TRIRRLSGGQK 182 (449)
Q Consensus 112 -----~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~~~~LSgGer 182 (449)
.+.+.|+|+||++ .+.|-+|+.+.+.-....+. ..+.++.++++.++|+.+||.+... +++++||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 1236799999996 46777999999987766653 2347778889999999999987655 49999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||.||+||+++|++||+||||++||+.++.+|+++|+++.++.|. ++|++|||+ .-+.++||+|+||++|++++.|
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~--a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM--AVLFITHDL-GVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCc--EEEEEcCCH-HHHHHhcCeEEEEECCEEEEec
Confidence 9999999999999999999999999999999999999999988866 999999997 5799999999999999999999
Q ss_pred ChhhHHH
Q 044030 263 PATAANE 269 (449)
Q Consensus 263 ~~~~~~~ 269 (449)
+++++..
T Consensus 238 ~~~~i~~ 244 (539)
T COG1123 238 PTEEILS 244 (539)
T ss_pred CHHHHHh
Confidence 9998754
No 186
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1e-43 Score=340.32 Aligned_cols=205 Identities=25% Similarity=0.335 Sum_probs=175.2
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeccc---ccCcEEEEcCCCC--CCCCCC
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-TRQTGKILINGHKKAL---AYGTSAYVTQDDT--LITTLT 131 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-~~~~G~I~~~g~~~~~---~~~~i~yv~Q~~~--l~~~lT 131 (449)
+|+|+||++++|++++|+||||||||||+|+|+|+++|. .+.+|+|.++|++... ..+.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999998761 0138999999987532 1246999999984 567789
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc---hhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ---DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD 208 (449)
+.|++.+..... ........+++.++++.+++. +..++++..|||||||||+||+||+.+|+++||||||+|||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 999998765432 112233456788999999998 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 209 ~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|+++..|+++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGT--GILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999865555 999999996 5788999999999999999999887653
No 187
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.7e-44 Score=335.89 Aligned_cols=197 Identities=31% Similarity=0.494 Sum_probs=170.1
Q ss_pred EEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc---c----
Q 044030 40 WKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA---L---- 112 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~---~---- 112 (449)
++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+.. .
T Consensus 1 i~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 1 LKNISKKF------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKAS 71 (206)
T ss_pred CcceEEEE------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHH
Confidence 36788872 3457999999999999999999999999999999999998774 899999998732 1
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|++||+.+..... .....+..+++.++++.+|+.+..++++.+||||||||++||+|
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~lara 148 (206)
T TIGR03608 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARA 148 (206)
T ss_pred HHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHH
Confidence 1246999999999999999999999875432 22334455678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
|+.+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++. ....||++++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GK--TIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CC--EEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999999754 55 9999999973 45689999875
No 188
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=341.97 Aligned_cols=217 Identities=24% Similarity=0.322 Sum_probs=183.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. .+.+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFY------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEE------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 57899999983 3467999999999999999999999999999999999998752 1248999999987521
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerqR 184 (449)
.++.++|++|++.+++ .||.||+.+...... ........+++.+.++.+++. +..++++.+||||||||
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHH
Confidence 1346999999999887 799999988654321 112233445677888888874 45688899999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|+++..|++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~--tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NY--TIVIVTHSM-QQARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CC--eEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999974 34 999999996 578999999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 229 ~~~ 231 (249)
T PRK14253 229 QVI 231 (249)
T ss_pred HHH
Confidence 755
No 189
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-43 Score=341.68 Aligned_cols=217 Identities=26% Similarity=0.347 Sum_probs=183.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~-- 112 (449)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++.. +.+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 6 ILSTKNLNLWY------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred eEEEeeeEEEE------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 68999999983 34679999999999999999999999999999999999875311 248999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++. ||+||+.+....+. .......++.+.++++.+++. +..++.+..|||||||
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred cchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 12469999999988885 99999998765431 112233445677888888874 4578899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|+++..|+
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~--tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EY--TVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--Cc--eEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999999974 34 999999996 57888999999999999999999
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 232 ~~~~ 235 (253)
T PRK14261 232 TTQI 235 (253)
T ss_pred HHHH
Confidence 8765
No 190
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.1e-43 Score=377.53 Aligned_cols=211 Identities=23% Similarity=0.372 Sum_probs=186.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||+|++|++++|+||||||||||||+|+|+++|. +|+|.++|.+...
T Consensus 11 ~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQY------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEe------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999999774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+||.||+.+.... ..+.++++.++++.+||.+..++++.+|||||||||+||+|
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHH
Confidence 124599999999999999999999875321 12344678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++||++ .++..+||++++|++|++++.|++++.
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~--tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GV--GIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999999999854 55 999999996 578899999999999999999988764
No 191
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.4e-43 Score=342.27 Aligned_cols=217 Identities=26% Similarity=0.356 Sum_probs=182.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----cc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-----KA 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-----~~ 111 (449)
.|+++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (253)
T TIGR02323 3 LLQVSGLSKSY------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELY 73 (253)
T ss_pred eEEEeeeEEEe------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccc
Confidence 58999999983 3456999999999999999999999999999999999998774 8999999865 32
Q ss_pred c---------ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCCh
Q 044030 112 L---------AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSG 179 (449)
Q Consensus 112 ~---------~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg 179 (449)
. ..+.++|++|++. +++.+|+.+|+.+...... ........+.+.++++.+|+. ...++.+..|||
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSg 151 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSG 151 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhcCchhcCH
Confidence 1 0235899999974 4566799999976432110 011123346788999999997 588999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ ..+..+||++++|++|+++
T Consensus 152 G~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tii~vsH~~-~~~~~~~d~~~~l~~G~i~ 228 (253)
T TIGR02323 152 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGL--AVIIVTHDL-GVARLLAQRLLVMQQGRVV 228 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999998755555 999999996 5788899999999999999
Q ss_pred EecChhhH
Q 044030 260 YFGPATAA 267 (449)
Q Consensus 260 ~~g~~~~~ 267 (449)
..|+++++
T Consensus 229 ~~~~~~~~ 236 (253)
T TIGR02323 229 ESGLTDQV 236 (253)
T ss_pred EECCHHHH
Confidence 99988755
No 192
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.7e-43 Score=342.42 Aligned_cols=216 Identities=20% Similarity=0.334 Sum_probs=183.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT-RQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~-~~~G~I~~~g~~~~~--- 112 (449)
.|+++||++.| ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~-------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 76 (254)
T PRK10418 4 QIELRNIALQA-------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCAL 76 (254)
T ss_pred EEEEeCeEEEe-------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccccc
Confidence 68999999983 1369999999999999999999999999999999999987621 148999999987532
Q ss_pred ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch---hhCccCCCCChHHHHHHHH
Q 044030 113 AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---AMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 ~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgGerqRv~i 187 (449)
..+.++|++|++. +.+.+|+.+++.+.+... .... ..+++.++++.+++.+ ..++.+..|||||||||+|
T Consensus 77 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 77 RGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred ccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHH
Confidence 1246999999974 456689999987654322 1111 2356889999999986 5799999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|+++..|+++++
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~--til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRAL--GMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCc--EEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999865555 999999996 568889999999999999999998765
No 193
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-44 Score=327.51 Aligned_cols=218 Identities=27% Similarity=0.419 Sum_probs=188.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+|+.+||+++ . .++.+|++||++++|||++||+||||||||||||.|+|.+.|+ +|++.+||.+....
T Consensus 1 mi~a~nls~~-~-----~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 1 MIRAENLSYS-L-----AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71 (259)
T ss_pred CeeeeeeEEE-e-----ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHH
Confidence 4788999998 3 5678999999999999999999999999999999999999775 89999999875421
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 114 --YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 114 --~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++-+.+||+..+-...||+|-+.++...... +....+..+.+++.|...++.+.+.+....|||||||||.+||.|
T Consensus 72 ~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred HHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence 24568999999885556999999998643311 112234556688999999999999999999999999999999999
Q ss_pred Hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 192 LT------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 192 ~~------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
++ ++++||||||||.||...+..++++.++++++ |. .|+++.||.+ ....+||+|++|++|+++..|+|+
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~--~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GG--AVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CC--cEEEEEccch-HHHHhhheeeeeeCCeEeecCCHH
Confidence 87 45689999999999999999999999999965 34 9999999985 688999999999999999999998
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 227 ~vl 229 (259)
T COG4559 227 DVL 229 (259)
T ss_pred Hhc
Confidence 764
No 194
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-43 Score=342.59 Aligned_cols=220 Identities=26% Similarity=0.370 Sum_probs=185.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~-- 112 (449)
.|+++|+++.| +...+|+|+||++++||+++|+||||||||||+++|+|+++|+. ..+|+|.++|++...
T Consensus 7 ~l~~~nl~~~~------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~ 80 (261)
T PRK14258 7 AIKVNNLSFYY------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR 80 (261)
T ss_pred eEEEeeEEEEe------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc
Confidence 58999999983 33469999999999999999999999999999999999987621 137999999987421
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++ +|+.||+.+...... ..+..+..+++.++++.+++. +..++.+..|||||||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 81 VNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQ 157 (261)
T ss_pred cchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 1346999999998888 899999988654321 012333445678899999874 4578899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC-----CeE
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA-----GQT 258 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~-----G~i 258 (449)
|++||++|+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++ |++
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~--tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i 234 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSEL--TMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQL 234 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCC--EEEEEECCH-HHHHHhcCEEEEEccCCCcCceE
Confidence 999999999999999999999999999999999999998754455 999999996 578999999999999 999
Q ss_pred EEecChhhHH
Q 044030 259 VYFGPATAAN 268 (449)
Q Consensus 259 v~~g~~~~~~ 268 (449)
++.|+++++.
T Consensus 235 ~~~~~~~~~~ 244 (261)
T PRK14258 235 VEFGLTKKIF 244 (261)
T ss_pred EEeCCHHHHH
Confidence 9999998763
No 195
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-43 Score=340.46 Aligned_cols=217 Identities=23% Similarity=0.317 Sum_probs=182.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~-- 112 (449)
.++++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+++|.. +.+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 4 KIKIRGVNFFY------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred eEEEEEEEEEE------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 47899999983 34569999999999999999999999999999999999987631 236999999986521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++. |+.||+.+....+. ....+...+.++++++.+++. +..++.+.+|||||||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred cChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHH
Confidence 13569999999998885 99999998754321 011223345577788888864 4678999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ .++..+||++++|++|++++.|+
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NY--TIAIVTHNM-QQAARASDWTGFLLTGDLVEYGR 229 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--EEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999985 3 44 999999996 57889999999999999999999
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 230 ~~~~ 233 (251)
T PRK14249 230 TGEI 233 (251)
T ss_pred HHHH
Confidence 8765
No 196
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-43 Score=347.27 Aligned_cols=219 Identities=23% Similarity=0.343 Sum_probs=183.6
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~ 112 (449)
...|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|.+...
T Consensus 37 ~~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYY------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 3468999999983 33569999999999999999999999999999999999854 211258999999986421
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGe 181 (449)
.++.++|++|++.+++. ||.||+.+...... ..+....++++.++++.+|+ .+..++++..|||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 13469999999988875 99999998754321 11223334567788888887 456789999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|+++..
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~--tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SY--TIMIVTHNM-QQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CC--eEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999973 34 999999996 578889999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++++
T Consensus 263 g~~~~~ 268 (286)
T PRK14275 263 APTAQL 268 (286)
T ss_pred CCHHHH
Confidence 998765
No 197
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=343.95 Aligned_cols=219 Identities=23% Similarity=0.347 Sum_probs=182.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~ 112 (449)
...|+++|+++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |..+.+|+|.++|.+...
T Consensus 22 ~~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 22 KVVFDTQNLNLWY------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred ceEEEEeeeEEEE------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 3469999999983 34569999999999999999999999999999999999986 211358999999987521
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC----CchhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG----LQDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg----L~~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++. ||.||+.++..... .......++.+.++++.++ +.+..++++.+|||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe 172 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQ 172 (271)
T ss_pred ccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHH
Confidence 13469999999988875 99999998754321 1122223445677777774 4556788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ +++..+||++++|++|+++..
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~--tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DY--SIIIVTHNM-QQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CC--EEEEEEcCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999973 44 999999996 578899999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++++
T Consensus 248 g~~~~~ 253 (271)
T PRK14238 248 DDTDKI 253 (271)
T ss_pred CCHHHH
Confidence 988765
No 198
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-43 Score=344.02 Aligned_cols=219 Identities=26% Similarity=0.345 Sum_probs=184.8
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~ 112 (449)
.-.++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|++++. .+.+|+|.++|.+...
T Consensus 23 ~~~l~~~nl~~~~------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFY------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEE------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 3469999999983 3457999999999999999999999999999999999998641 1358999999987531
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGe 181 (449)
.++.++|++|++.+++. |+.||+.+...... .......++.+.++++.+++. +..++.+.+|||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 173 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQ 173 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHH
Confidence 13569999999988886 99999988754321 112233345678889999985 35788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ +++.+.||++++|++|+++..
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~--tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-S-KY--TIVIVTHNM-QQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-CC--eEEEEeCCH-HHHHhhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999997 3 44 999999996 578899999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|++++.
T Consensus 249 g~~~~~ 254 (272)
T PRK14236 249 GDTDTL 254 (272)
T ss_pred CCHHHH
Confidence 988765
No 199
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-43 Score=367.77 Aligned_cols=226 Identities=27% Similarity=0.403 Sum_probs=195.1
Q ss_pred CCeeEEEEeeEEEEeecC-----cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 34 DGVFLTWKDLTVTIVSNG-----KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
....++++||++.|...+ ..+...+++||||++.+||++||+|+||||||||.|+|+|+.+|. +|+|.++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCc
Confidence 345689999999953211 123467999999999999999999999999999999999999884 899999997
Q ss_pred eccc-------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCC
Q 044030 109 KKAL-------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLS 178 (449)
Q Consensus 109 ~~~~-------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LS 178 (449)
+.+. .++.+-+|||++ .+.|.+||.+++......+... ...+.++++.++++.+||.. .+++++++||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ryP~elS 431 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRYPHELS 431 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcCchhcC
Confidence 6211 124567777875 6899999999999887665322 24566678999999999986 7999999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++.|. |.|++|||+ ..+..+||||++|++|++
T Consensus 432 GGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~--t~lfISHDl-~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL--TYLFISHDL-AVVRYIADRVAVMYDGRI 508 (539)
T ss_pred cchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC--EEEEEeCCH-HHHHhhCceEEEEECCeE
Confidence 99999999999999999999999999999999999999999999988877 999999996 689999999999999999
Q ss_pred EEecChhhH
Q 044030 259 VYFGPATAA 267 (449)
Q Consensus 259 v~~g~~~~~ 267 (449)
|..|+.+++
T Consensus 509 VE~G~~~~v 517 (539)
T COG1123 509 VEEGPTEKV 517 (539)
T ss_pred EEeCCHHHH
Confidence 999988766
No 200
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-43 Score=343.99 Aligned_cols=219 Identities=24% Similarity=0.359 Sum_probs=185.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~- 112 (449)
..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.+...
T Consensus 20 ~~l~i~nl~~~~------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 20 PAMAAVNLTLGF------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred cEEEEeeEEEEE------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 468999999983 3467999999999999999999999999999999999998751 1358999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch----hhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD----AMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++ .|++||+.+...... ..+..+....+.++++.+++.+ ..++.+.+|||||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred chhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHH
Confidence 1356999999998888 799999988653221 1233444456778899999864 467889999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|+++..|+
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~--tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RL--TVIIVTHNL-AQAARISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999974 24 999999996 57889999999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
++++.
T Consensus 246 ~~~~~ 250 (276)
T PRK14271 246 TEQLF 250 (276)
T ss_pred HHHHH
Confidence 87663
No 201
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.8e-43 Score=343.36 Aligned_cols=222 Identities=27% Similarity=0.373 Sum_probs=186.8
Q ss_pred eEEEEeeEEEEeec----CcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 37 FLTWKDLTVTIVSN----GKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~----~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
+|+++||++.| .. ++..++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+...
T Consensus 3 ~l~~~nl~~~~-~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i~~~g~~~~~ 78 (268)
T PRK10419 3 LLNVSGLSHHY-AHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP---SQGNVSWRGEPLAK 78 (268)
T ss_pred eEEEeceEEEe-cCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEeccc
Confidence 48899999983 21 000136799999999999999999999999999999999999876 49999999986421
Q ss_pred --------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHH
Q 044030 113 --------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 --------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGe 181 (449)
..+.++|++|++ .+++..|+.|++.+...... .....+...+++++++.+|+. ...++.+..|||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 79 LNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred cChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHH
Confidence 134699999997 46778899999976543211 123344455789999999997 68899999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++++.
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~--tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT--ACLFITHDL-RLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCc--EEEEEECCH-HHHHHhCCEEEEEECCEEeee
Confidence 99999999999999999999999999999999999999999865555 999999996 578889999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++++
T Consensus 234 g~~~~~ 239 (268)
T PRK10419 234 QPVGDK 239 (268)
T ss_pred CChhhc
Confidence 988764
No 202
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-43 Score=344.23 Aligned_cols=217 Identities=25% Similarity=0.385 Sum_probs=183.3
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~ 112 (449)
...|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|++++.. +.+|+|.++|.+...
T Consensus 37 ~~~l~i~~l~~~~------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFY------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEE------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 4468999999983 34579999999999999999999999999999999999986311 258999999987521
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++. ||.||+.+..... .... ...+++.++++.+|+. +..++++.+|||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred cccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 13569999999988886 9999998875432 1222 3345688999999984 46789999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE-EeeCCeEEE
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC-LLSAGQTVY 260 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~-~l~~G~iv~ 260 (449)
||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ .++..+||+++ +|++|+++.
T Consensus 186 ~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~--tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 186 QQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EY--TVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CC--EEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 9999999999999999999999999999999999999999974 24 999999996 57888999975 579999999
Q ss_pred ecChhhH
Q 044030 261 FGPATAA 267 (449)
Q Consensus 261 ~g~~~~~ 267 (449)
.|+++++
T Consensus 261 ~g~~~~~ 267 (285)
T PRK14254 261 FDDTDKI 267 (285)
T ss_pred eCCHHHH
Confidence 9988765
No 203
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=7.4e-44 Score=342.51 Aligned_cols=212 Identities=25% Similarity=0.419 Sum_probs=173.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . .+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~-~---~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRY-K---PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEec-C---CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHH
Confidence 4689999983 2 12357999999999999999999999999999999999999774 8999999986431
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhCccCCCCChHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK-----ERAEVTIREM--GLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv 185 (449)
.++.++|++|++.+++ .||.||+.+.... ....... ..+.++++.+ ++....++++.+|||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv 147 (237)
T cd03252 74 LRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRI 147 (237)
T ss_pred HhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHH
Confidence 1356999999988775 6999999774321 1111111 1234455555 666677889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|+++||||||+|||+.++..+.+.|++++ + |. |||++||++. ++ ..||++++|++|++++.|+++
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~ 221 (237)
T cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GR--TVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHD 221 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CC--EEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999996 4 55 9999999974 56 569999999999999999987
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 222 ~~~ 224 (237)
T cd03252 222 ELL 224 (237)
T ss_pred HHH
Confidence 654
No 204
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=382.63 Aligned_cols=222 Identities=23% Similarity=0.309 Sum_probs=189.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-----
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK----- 110 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~----- 110 (449)
.+|+++||++.| .. ..+...+|+||||++++||++||+||||||||||+++|+|+++|. +|+|.++|...
T Consensus 11 ~~l~v~~l~~~y-~~-~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 11 DVLAVENLNIAF-MQ-EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSR 85 (623)
T ss_pred ceEEEeceEEEe-cC-CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccc
Confidence 369999999983 21 112357999999999999999999999999999999999999774 89999988632
Q ss_pred --------c------cccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc---hhhC
Q 044030 111 --------A------LAYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ---DAMN 171 (449)
Q Consensus 111 --------~------~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~ 171 (449)
. ...+.+|||+|++ .+++.+||.||+.++..... +.+..+.++++.++++.+||. +.++
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 163 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILS 163 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHh
Confidence 0 0123699999997 67889999999999865421 234455567889999999995 4679
Q ss_pred ccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 172 ~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
+++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|. |||++|||+ ..+.++||+|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~--tvi~itHdl-~~~~~~adri~ 240 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSM--GVIFITHDM-GVVAEIADRVL 240 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCC--EEEEEcCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999999999865565 999999996 57889999999
Q ss_pred EeeCCeEEEecChhhH
Q 044030 252 LLSAGQTVYFGPATAA 267 (449)
Q Consensus 252 ~l~~G~iv~~g~~~~~ 267 (449)
+|++|+++..|+++++
T Consensus 241 vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 241 VMYQGEAVETGSVEQI 256 (623)
T ss_pred EeeCCeecccCCHHHh
Confidence 9999999999988765
No 205
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-43 Score=380.71 Aligned_cols=224 Identities=24% Similarity=0.338 Sum_probs=190.7
Q ss_pred eeEEEEeeEEEEeecCc------ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 36 VFLTWKDLTVTIVSNGK------KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~------~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
..|+++||++.| .... .+.+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+
T Consensus 312 ~~L~~~~l~~~y-~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~ 387 (623)
T PRK10261 312 PILQVRNLVTRF-PLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQR 387 (623)
T ss_pred ceEEEeeeEEEE-cCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEE
Confidence 469999999983 2100 01246999999999999999999999999999999999999774 8999999986
Q ss_pred ccc--------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCC
Q 044030 110 KAL--------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLS 178 (449)
Q Consensus 110 ~~~--------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 178 (449)
+.. .++.++||+|++ .+++.+||.|++.+....+. .....+.++++.++++.+||. +..++++++||
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LS 465 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS 465 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCC
Confidence 521 134699999997 58899999999988654321 112334556788999999996 67899999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|. |||++|||+ ..+..+||+|++|++|++
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~--tvi~isHdl-~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI--AYLFISHDM-AVVERISHRVAVMYLGQI 542 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999866565 999999996 578899999999999999
Q ss_pred EEecChhhHH
Q 044030 259 VYFGPATAAN 268 (449)
Q Consensus 259 v~~g~~~~~~ 268 (449)
++.|+++++.
T Consensus 543 v~~g~~~~i~ 552 (623)
T PRK10261 543 VEIGPRRAVF 552 (623)
T ss_pred EEecCHHHHh
Confidence 9999988763
No 206
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-43 Score=343.13 Aligned_cols=218 Identities=22% Similarity=0.318 Sum_probs=182.6
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~ 112 (449)
...|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|++++. .+.+|+|.++|++...
T Consensus 18 ~~~l~~~nl~~~~------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFY------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEe------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 4479999999983 3457999999999999999999999999999999999997531 1248999999987521
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++. ||.||+.+..... ... ...++.+.+.++.+++ .+..++++..|||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 166 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQ 166 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHH
Confidence 13569999999988875 9999998865432 111 1223446677888876 356788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee-------
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS------- 254 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~------- 254 (449)
||||+||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|+
T Consensus 167 ~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~--tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QY--TIIMVTHNM-QQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CC--EEEEEeCCH-HHHHHhCCEEEEEeccccccc
Confidence 999999999999999999999999999999999999999997 3 34 999999997 57889999999998
Q ss_pred --CCeEEEecChhhHH
Q 044030 255 --AGQTVYFGPATAAN 268 (449)
Q Consensus 255 --~G~iv~~g~~~~~~ 268 (449)
+|++++.|+++++.
T Consensus 242 ~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 242 KRRGKLVEFSPTEQMF 257 (274)
T ss_pred ccCceEEEeCCHHHHH
Confidence 89999999998763
No 207
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3e-43 Score=336.10 Aligned_cols=209 Identities=24% Similarity=0.361 Sum_probs=175.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 6 ~~i~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 6 PLLQLQNVGYLA------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKP 76 (225)
T ss_pred ceEEEeccEEee------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCH
Confidence 368999999983 3457999999999999999999999999999999999998774 8999999986531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++. |++||+.+....+. . ...++++.++++.+++. ...++++..|||||+|||+||+
T Consensus 77 ~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 150 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---Q--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIR 150 (225)
T ss_pred HHHHhccEEEecccccccc-cHHHHHHhHHhhcC---C--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHH
Confidence 12468999999988875 99999988654321 1 11234577899999996 5789999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee-CCeEEEecC
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS-AGQTVYFGP 263 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~-~G~iv~~g~ 263 (449)
||+.+|++++|||||+|||+.++..+.+.|++++++.|. |||++||++. ++ ..||++++|+ ++..+.+|.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 151 NLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNI--AVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 999999999999999999999999999999999865555 9999999974 56 4699999995 555555553
No 208
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.1e-42 Score=337.36 Aligned_cols=218 Identities=25% Similarity=0.294 Sum_probs=181.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+||||++++||++||+||||||||||+++|+|+. +| .+|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 7 ILEIKNLHASV------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESILDLE 77 (252)
T ss_pred eEEEEeEEEEe------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcccCC
Confidence 68999999983 2356999999999999999999999999999999999973 34 58999999987532
Q ss_pred --c-cC-cEEEEcCCCCCCCCCCHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHcCCc-hhhCccCC-CCChHHH
Q 044030 113 --A-YG-TSAYVTQDDTLITTLTVKEAVYYSAQLQLP----DTMPKSDKKERAEVTIREMGLQ-DAMNTRIR-RLSGGQK 182 (449)
Q Consensus 113 --~-~~-~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~LSgGer 182 (449)
. .+ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+|+. ...++.+. .||||||
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 157 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEK 157 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHH
Confidence 1 12 478999999999999999999875432110 0011223345678899999997 57788887 5999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEe
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYF 261 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~ 261 (449)
|||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ ..+... ||++++|++|++++.
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SEN--SIILITHYQ-RLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCH-HHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999984 454 999999996 456666 899999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 988743
No 209
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.9e-43 Score=374.22 Aligned_cols=218 Identities=24% Similarity=0.314 Sum_probs=186.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECC--------
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILING-------- 107 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g-------- 107 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|++ +| .+|+|.++|
T Consensus 1 l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKF------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEE------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEeccccccccc
Confidence 4689999983 3467999999999999999999999999999999999996 45 489999972
Q ss_pred ---------------Eec--------c-------cccCcEEEEcCC-CCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH
Q 044030 108 ---------------HKK--------A-------LAYGTSAYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER 156 (449)
Q Consensus 108 ---------------~~~--------~-------~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~ 156 (449)
.+. . ..++.++|++|+ +.+++.+||+||+.+..... ..+..+.+++
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~ 148 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGR 148 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 111 0 012458999997 67888899999999875432 2334445677
Q ss_pred HHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEe
Q 044030 157 AEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASI 236 (449)
Q Consensus 157 v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~t 236 (449)
+.++++.+||++..++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++|
T Consensus 149 ~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tviivt 226 (520)
T TIGR03269 149 AVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI--SMVLTS 226 (520)
T ss_pred HHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999765555 999999
Q ss_pred cCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHH
Q 044030 237 HQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEF 270 (449)
Q Consensus 237 H~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~ 270 (449)
||+ ..+.++||++++|++|++++.|++++..+.
T Consensus 227 Hd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 227 HWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 996 568889999999999999999998776554
No 210
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-44 Score=321.73 Aligned_cols=216 Identities=28% Similarity=0.408 Sum_probs=192.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+.+.| |...+|++||++.++|+++.|||.|||||||+|+||.-+..|. .|.|.+||+.+..
T Consensus 6 ~l~v~dlHK~~------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~ 76 (256)
T COG4598 6 ALEVEDLHKRY------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ceehhHHHhhc------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCC
Confidence 57889998873 7788999999999999999999999999999999999988774 8999999975311
Q ss_pred -------c-------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCC
Q 044030 113 -------A-------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178 (449)
Q Consensus 113 -------~-------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS 178 (449)
. +.+.++|||+.++++.|||.||+.-+..--+ +.++.+..++++.+|..+|+.+..+.++..||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LS 154 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAYPAHLS 154 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcCccccC
Confidence 0 1246999999999999999999976532211 45778888899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||+||++|||||+.+|+++++|||||+|||...-++++.++++|++ | +|.+++||.+ ..+.+...+|++|++|.+
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-g--rTMv~VTHEM-~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-G--RTMVVVTHEM-GFARDVSSHVIFLHQGKI 230 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-C--CeEEEEeeeh-hHHHhhhhheEEeeccee
Confidence 99999999999999999999999999999999999999999999965 4 4999999996 578889999999999999
Q ss_pred EEecChhhH
Q 044030 259 VYFGPATAA 267 (449)
Q Consensus 259 v~~g~~~~~ 267 (449)
-.+|+|+++
T Consensus 231 EE~G~P~qv 239 (256)
T COG4598 231 EEEGPPEQV 239 (256)
T ss_pred cccCChHHH
Confidence 999999876
No 211
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=336.94 Aligned_cols=218 Identities=22% Similarity=0.324 Sum_probs=183.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~- 112 (449)
+.++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.. |..+.+|+|.++|.++..
T Consensus 2 ~~l~~~~v~~~~------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 2 YRIEVENLNTYF------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred cEEEEEeEEEEe------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc
Confidence 358899999983 34579999999999999999999999999999999999864 211258999999987531
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGer 182 (449)
..+.++|++|++.+++. |+.||+.+...... .......++++.++++.+|+. +..++.+..||||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ 152 (250)
T ss_pred cccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence 13569999999988885 99999987653321 112233456788899999874 456888999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ .++...||++++|++|++++.|
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~--tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g 227 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DY--TIVIVTHNM-QQATRVSKYTSFFLNGEIIESG 227 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEECCH-HHHHhhcCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999996 3 44 999999996 5789999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 228 ~~~~~ 232 (250)
T PRK14266 228 LTDQI 232 (250)
T ss_pred CHHHH
Confidence 98765
No 212
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-43 Score=341.35 Aligned_cols=216 Identities=24% Similarity=0.330 Sum_probs=181.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+.++. .+.+|+|.++|.+...
T Consensus 10 ~l~i~~v~~~~------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 10 VLRTENLNVYY------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred EEEEeeeEEEE------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 68999999983 3457999999999999999999999999999999999987531 1258999999986521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++. |+.||+.+..... ... ....+++.++++.+++. +..++.+.+|||||||
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 158 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQ 158 (264)
T ss_pred cChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHH
Confidence 13469999999988874 9999998875432 111 22335567778888873 4578889999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee---------
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS--------- 254 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~--------- 254 (449)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ +++.++||++++|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~--tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QY--TIIIVTHNM-QQAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CC--EEEEEecCH-HHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999974 34 999999996 57999999999998
Q ss_pred CCeEEEecChhhHH
Q 044030 255 AGQTVYFGPATAAN 268 (449)
Q Consensus 255 ~G~iv~~g~~~~~~ 268 (449)
+|++++.|+++++.
T Consensus 234 ~g~i~~~~~~~~~~ 247 (264)
T PRK14243 234 YGYLVEFDRTEKIF 247 (264)
T ss_pred CceEEEeCCHHHHH
Confidence 89999999987763
No 213
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4e-43 Score=372.51 Aligned_cols=218 Identities=25% Similarity=0.416 Sum_probs=185.7
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +.+|+|.++|++...
T Consensus 2 l~i~~l~~~~------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 2 LEMKGIVKTF------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred EEEEeEEEEe------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 6899999983 3457999999999999999999999999999999999998752 248999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhh-CccCCCCChHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAM-NTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++||+|++.+++.+||.||+.++....... ....++..+++.++++.+|+.+.. ++++++|||||||||+||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 1246999999999999999999998865332110 122334456788999999998765 6779999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
||+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~--tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGV--ACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999999999999999999974 455 999999996 57889999999999999999988754
No 214
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-43 Score=339.58 Aligned_cols=212 Identities=29% Similarity=0.439 Sum_probs=175.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . + .++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 1 i~~~~l~~~~-~-~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRY-P-G--DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV---DSGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEe-C-C--CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC---CCCEEEECCEEhhhCCHHH
Confidence 4689999983 1 1 123699999999999999999999999999999999999977 48999999986431
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhCccCCCCChHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK-----ERAEVTIREM--GLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv 185 (449)
..+.++|++|++.+++ .||+||+.+.... ....... ..+.++++.+ ++.+..++++..||||||||+
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv 147 (234)
T cd03251 74 LRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRI 147 (234)
T ss_pred HHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHH
Confidence 1346999999998886 5999999875321 1111111 1245666666 677778889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++. ++.. ||++++|++|+++..|+++
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~ 221 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NR--TTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHE 221 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHH
Confidence 99999999999999999999999999999999999996 3 44 9999999974 5654 9999999999999999887
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 222 ~~~ 224 (234)
T cd03251 222 ELL 224 (234)
T ss_pred HHH
Confidence 654
No 215
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=372.32 Aligned_cols=215 Identities=22% Similarity=0.339 Sum_probs=184.0
Q ss_pred EEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc------c
Q 044030 40 WKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL------A 113 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~------~ 113 (449)
++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 ~~nl~~~~------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~ 71 (491)
T PRK10982 1 MSNISKSF------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEAL 71 (491)
T ss_pred CCceEEEe------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHH
Confidence 36788872 3467999999999999999999999999999999999999774 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+||.||+.++.........+..+..++++++++.+|+.+..++++.+|||||||||+||+||+.
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 24699999999999999999999876421111011233445678899999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ +++..+||++++|++|+++..|++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~--tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGC--GIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999974 455 999999996 578899999999999999999987653
No 216
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-43 Score=371.76 Aligned_cols=215 Identities=25% Similarity=0.394 Sum_probs=185.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTF------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEE------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHH
Confidence 58999999983 3457999999999999999999999999999999999998774 8999999987531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.++|++|++.+++.+||.||+.++............+.++++.++++.+||.+..++++.+|||||||||+||+|
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 135699999999999999999999886421110112234445678899999999988899999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|+++..++.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGR--VILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999975 455 999999996 578899999999999999877653
No 217
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4.6e-43 Score=339.66 Aligned_cols=198 Identities=26% Similarity=0.407 Sum_probs=173.0
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCCCH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTv 132 (449)
+|+|+||++++||+++|+||||||||||+++|+|+.++ +|+|.++|++... ..+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999998742 7999999987532 12458999999888888999
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh-------CCCEEEEeCCCC
Q 044030 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT-------RPKLLFLDEPTS 205 (449)
Q Consensus 133 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~-------~P~llllDEPts 205 (449)
.||+.+.... .....+..++++++++.+|+.+..++++..||||||||++||+||+. +|+++||||||+
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~ 162 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMN 162 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcc
Confidence 9999876321 12233345678899999999999999999999999999999999998 679999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|||+.++..+.+.|++++++ |. |||++||++ .++..+||++++|++|+++..|+++++
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~-~~--tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 163 SLDVAQQAALDRLLSELCQQ-GI--AVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCHHHHHHHHHHHHHHHhC-CC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999743 55 999999996 478899999999999999999987654
No 218
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.3e-43 Score=330.94 Aligned_cols=204 Identities=25% Similarity=0.318 Sum_probs=177.0
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
..+..|+++|+++. + +++.+++|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 7 ~~~~~l~~~~l~~~-~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~ 77 (214)
T PRK13543 7 TAPPLLAAHALAFS-R-----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATR 77 (214)
T ss_pred CCcceEEEeeEEEe-c-----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccc
Confidence 34457999999998 2 3457999999999999999999999999999999999999774 8999999987542
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|+.||+.+....+ .. ..++.+.++++.++|.+..++++..||||||||++||++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (214)
T PRK13543 78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARL 151 (214)
T ss_pred hhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHH
Confidence 1245899999999999999999998875432 11 123456788999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
++.+|++++|||||+|||+.++..+.+.|++++++ |. |||++||++ .++.++||++++++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 152 WLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG-GG--AALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CC--EEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999754 54 999999996 579999999999864
No 219
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-43 Score=342.41 Aligned_cols=218 Identities=26% Similarity=0.382 Sum_probs=180.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--Y 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--~ 114 (449)
.|+++||++.| . +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+.... .
T Consensus 6 ~l~~~~l~~~~-~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTW-R----NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEe-c----CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhcc
Confidence 58999999983 1 2357999999999999999999999999999999999998774 89999999875321 2
Q ss_pred CcEEEEcCCCCCC--CCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 115 GTSAYVTQDDTLI--TTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 115 ~~i~yv~Q~~~l~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
+.++|++|++.+. ...++++++.++...... ........++++.++++.+||.+..++++..||||||||++||+||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL 157 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI 157 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 3599999997652 234788988654211000 0111223345678899999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+.+|++++|||||+|||+.++..+.+.|++++++ |. |||++||++ +++.++||+++++ +|++++.|+++++
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~--tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GK--TMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999754 55 999999996 5788999999877 8999999988764
No 220
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=337.87 Aligned_cols=218 Identities=24% Similarity=0.335 Sum_probs=183.8
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKA 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~ 111 (449)
.+..+.++++++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. +.+|+|+++|.+..
T Consensus 5 ~~~~~~~~~~~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 5 APIVMDCKLDKIFY------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred CCceEEEEeEEEEe------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 34568899999872 45679999999999999999999999999999999999987521 25899999998752
Q ss_pred c-------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch----hhCccCCCCChH
Q 044030 112 L-------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD----AMNTRIRRLSGG 180 (449)
Q Consensus 112 ~-------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSgG 180 (449)
. ..+.++|++|++.++ .+|+.||+.++..... . ..+..+++.++++.+++.+ ..+++++.||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 153 (261)
T PRK14263 79 GKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGG 153 (261)
T ss_pred ccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence 1 134699999999887 5899999998765321 1 1233457888999999854 446788999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee------
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS------ 254 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~------ 254 (449)
|+||++|||||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|+
T Consensus 154 ~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~--tii~isH~~-~~i~~~~d~v~~l~~~~~~~ 228 (261)
T PRK14263 154 QQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DY--TIALVTHNM-QQAIRVADTTAFFSVDISQG 228 (261)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEeCCH-HHHHHhCCEEEEEecccccc
Confidence 9999999999999999999999999999999999999999996 3 44 999999997 47889999999996
Q ss_pred --CCeEEEecChhhH
Q 044030 255 --AGQTVYFGPATAA 267 (449)
Q Consensus 255 --~G~iv~~g~~~~~ 267 (449)
+|+++..|+++++
T Consensus 229 ~~~G~i~~~g~~~~~ 243 (261)
T PRK14263 229 TRTGYLVEMGPTAQI 243 (261)
T ss_pred cCCceEEEeCCHHHH
Confidence 8999999998765
No 221
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=7.1e-43 Score=372.27 Aligned_cols=222 Identities=23% Similarity=0.371 Sum_probs=187.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---cc
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN-GHK---KA 111 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~-g~~---~~ 111 (449)
.+|+++||++.| .....+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++ |.+ ..
T Consensus 278 ~~l~~~~l~~~~-~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 278 PIIKVRNVSKRY-ISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMT 353 (520)
T ss_pred ceEEEeccEEEe-ccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCcccccc
Confidence 369999999983 210112357999999999999999999999999999999999999774 8999996 532 11
Q ss_pred --------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----hhCccCCCCC
Q 044030 112 --------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----AMNTRIRRLS 178 (449)
Q Consensus 112 --------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~~~LS 178 (449)
...+.++|++|++.+++.+||.||+.+...+. .+....++++.++++.+||.+ ..++++.+||
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 429 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence 01246999999999999999999998764321 223334467889999999974 5799999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++.++||++++|++|++
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tvi~vsHd~-~~~~~~~d~i~~l~~G~i 506 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ--TFIIVSHDM-DFVLDVCDRAALMRDGKI 506 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCc--EEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999865555 999999996 578899999999999999
Q ss_pred EEecChhhHH
Q 044030 259 VYFGPATAAN 268 (449)
Q Consensus 259 v~~g~~~~~~ 268 (449)
++.|+++++.
T Consensus 507 ~~~g~~~~~~ 516 (520)
T TIGR03269 507 VKIGDPEEIV 516 (520)
T ss_pred EEECCHHHHH
Confidence 9999887654
No 222
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=338.52 Aligned_cols=216 Identities=29% Similarity=0.421 Sum_probs=182.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC------Eec
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------HKK 110 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g------~~~ 110 (449)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++| .+.
T Consensus 10 ~i~~~~~~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 10 VFNISRLYLYI------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGKDI 80 (257)
T ss_pred heeeeeEEEec------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCccc
Confidence 48999999982 4567999999999999999999999999999999999998774 65555554 433
Q ss_pred cc-----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHH
Q 044030 111 AL-----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQ 181 (449)
Q Consensus 111 ~~-----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGe 181 (449)
.. ..+.++|++|++.+++.+|+.||+.+...... .....+.++++.++++.+++. +..++.+..|||||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence 11 13469999999999999999999998754321 112334456788999999996 46788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|++++|||||+|||+.++..+.+.|.+++ + +. |||++||++ ..+..+||++++|++|+++..
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EI--AIVIVSHNP-QQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-Cc--EEEEEECCH-HHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999996 3 34 999999996 578899999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|++++..
T Consensus 234 g~~~~~~ 240 (257)
T PRK14246 234 GSSNEIF 240 (257)
T ss_pred CCHHHHH
Confidence 9887653
No 223
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.4e-42 Score=370.80 Aligned_cols=224 Identities=24% Similarity=0.366 Sum_probs=187.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
+|+++|+++.| .. ..+.+.+|+|+||++++||++||+||||||||||+|+|+|+++|. .+.+|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-~~-~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAF-RQ-QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEEEe-cC-CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 58999999983 21 111357999999999999999999999999999999999999752 1258999999987521
Q ss_pred -------ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch---hhCccCCCCChH
Q 044030 113 -------AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---AMNTRIRRLSGG 180 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgG 180 (449)
..+.++|++|++. +++.+|+.+++.+...... +.+..+..++++++++.+||.+ ..++++.+||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 1146999999974 6777899999886543211 2334455677899999999975 469999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ ..+..+||+|++|++|++++
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tvi~vtHd~-~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNM--GLLFITHNL-SIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCC--eEEEEcCcH-HHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999865555 999999997 57888999999999999999
Q ss_pred ecChhhH
Q 044030 261 FGPATAA 267 (449)
Q Consensus 261 ~g~~~~~ 267 (449)
.|+++++
T Consensus 238 ~g~~~~~ 244 (529)
T PRK15134 238 QNRAATL 244 (529)
T ss_pred eCCHHHH
Confidence 9988765
No 224
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-43 Score=336.57 Aligned_cols=212 Identities=26% Similarity=0.384 Sum_probs=171.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| . +.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~-~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSY-D----EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEec-C----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHH
Confidence 47899999983 1 2346999999999999999999999999999999999999774 8999999986531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
..+.++|++|++.+++. |+.||+.+.... .......+ ...++++.+ ++....++.+..||||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~r 147 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL 147 (229)
T ss_pred HHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHH
Confidence 13469999999988876 999999775321 11111111 123344444 55556677789999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|+++||||||+|||+.++..+++.|++++ + +. |||++||++. ++ ..||++++|++|++++.|+.
T Consensus 148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~ 221 (229)
T cd03254 148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GR--TSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTH 221 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCH
Confidence 999999999999999999999999999999999999986 4 44 9999999974 55 46999999999999999887
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
++..
T Consensus 222 ~~~~ 225 (229)
T cd03254 222 DELL 225 (229)
T ss_pred HHHH
Confidence 6553
No 225
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.1e-43 Score=327.83 Aligned_cols=197 Identities=27% Similarity=0.357 Sum_probs=170.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|++++| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 2 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACER------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEE------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHh
Confidence 7899999983 3457999999999999999999999999999999999999774 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+|+.||+.+..... .. ...++++++++.+|+.+..++++..||||||||++||+||+.
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhc
Confidence 346999999999999999999998876432 11 224568889999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++ .++....++++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGG--MVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCh-hhhccCCceEEec
Confidence 9999999999999999999999999999974 454 999999997 4666655677666
No 226
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.3e-42 Score=331.50 Aligned_cols=202 Identities=25% Similarity=0.384 Sum_probs=171.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
+.++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|. +|+|+++|++...
T Consensus 23 l~~~~~~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~----- 88 (224)
T cd03220 23 LGILGRKGEV------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL----- 88 (224)
T ss_pred hhhhhhhhhc------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh-----
Confidence 5667777652 5678999999999999999999999999999999999998774 8999999986421
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
..+...+++.+||.||+.+..... .....+.++++.++++.+++.+..++++.+||||||||++||+||+.+|++
T Consensus 89 --~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 163 (224)
T cd03220 89 --LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDI 163 (224)
T ss_pred --hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 112234567789999998876532 123344455678899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+||||||+|||+.++..+.+.|++++++ |. |||++||++ .++..+||++++|++|++++.|
T Consensus 164 lllDEP~~gLD~~~~~~~~~~l~~~~~~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 164 LLIDEVLAVGDAAFQEKCQRRLRELLKQ-GK--TVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999754 55 999999996 5788899999999999998765
No 227
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.8e-43 Score=338.67 Aligned_cols=214 Identities=27% Similarity=0.402 Sum_probs=172.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . ..+++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~i~~l~~~~-~--~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRY-P--SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEec-C--CCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHH
Confidence 4689999983 2 112356999999999999999999999999999999999998774 8999999987431
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhCccCCCCChHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREM--GLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv 185 (449)
..+.++|++|++.+++ .||+||+.+..... ....... .+.++++.+ ++....++.+..|||||||||
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv 148 (238)
T cd03249 75 LRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRI 148 (238)
T ss_pred HHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHH
Confidence 1246999999988876 59999998753211 1111111 123334444 556667788899999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|++++|||||+|||+.++..+.+.|++++ + |. |||++||++. ++. .||++++|++|++++.|+.+
T Consensus 149 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-g~--~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~ 222 (238)
T cd03249 149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-K-GR--TTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHD 222 (238)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999986 3 44 9999999974 565 89999999999999999877
Q ss_pred hHHH
Q 044030 266 AANE 269 (449)
Q Consensus 266 ~~~~ 269 (449)
+..+
T Consensus 223 ~~~~ 226 (238)
T cd03249 223 ELMA 226 (238)
T ss_pred HHhh
Confidence 6543
No 228
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-42 Score=334.74 Aligned_cols=216 Identities=22% Similarity=0.299 Sum_probs=184.7
Q ss_pred eeEEEEeeEEEEeecC--------------cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 044030 36 VFLTWKDLTVTIVSNG--------------KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG 101 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~--------------~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G 101 (449)
+.++++||+++|-... +...+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 5789999999852210 114467999999999999999999999999999999999999774 89
Q ss_pred EEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH
Q 044030 102 KILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ 181 (449)
Q Consensus 102 ~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 181 (449)
+|.++|. +++++|+..+.+.+|+.||+.+..... +...++....++.+++.+++.+..++.+++|||||
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq 148 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGM 148 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHH
Confidence 9999985 357778877888899999998765432 22334445567788999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|++|||||||+|||+.++..+++.|.++++ .|. |||++||++ .++.++||++++|++|+++..
T Consensus 149 ~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~--tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 149 RAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNK--TIFFVSHNL-GQVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCC--EEEEEcCCH-HHHHHHcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999974 455 999999996 578889999999999999999
Q ss_pred cChhhHHH
Q 044030 262 GPATAANE 269 (449)
Q Consensus 262 g~~~~~~~ 269 (449)
|+++++.+
T Consensus 225 g~~~~~~~ 232 (264)
T PRK13546 225 GELDDVLP 232 (264)
T ss_pred CCHHHHHH
Confidence 99877653
No 229
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-42 Score=371.65 Aligned_cols=223 Identities=25% Similarity=0.396 Sum_probs=187.9
Q ss_pred eeEEEEeeEEEEeecCc------ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 36 VFLTWKDLTVTIVSNGK------KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~------~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
..|+++|+++.| ..+. .+.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ .+|+|+++|.+
T Consensus 274 ~~l~~~~l~~~~-~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~----~~G~i~~~g~~ 348 (529)
T PRK15134 274 PLLDVEQLQVAF-PIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN----SQGEIWFDGQP 348 (529)
T ss_pred CcccccCcEEEe-ecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC----CCcEEEECCEE
Confidence 358999999983 2110 013579999999999999999999999999999999999974 38999999986
Q ss_pred ccc--------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCC
Q 044030 110 KAL--------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLS 178 (449)
Q Consensus 110 ~~~--------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 178 (449)
+.. .++.++|++|++ .+++.+||.||+.++...+.. ..+..+.++++.++++.+||. +..++++.+||
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 427 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFS 427 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCC
Confidence 521 124599999997 478889999999887543211 123334456788999999997 57899999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|++|++
T Consensus 428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tvi~vsHd~-~~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQL--AYLFISHDL-HVVRALCHQVIVLRQGEV 504 (529)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCC--EEEEEeCCH-HHHHHhcCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999999865555 999999996 578899999999999999
Q ss_pred EEecChhhH
Q 044030 259 VYFGPATAA 267 (449)
Q Consensus 259 v~~g~~~~~ 267 (449)
+..|+++++
T Consensus 505 ~~~~~~~~~ 513 (529)
T PRK15134 505 VEQGDCERV 513 (529)
T ss_pred EEEcCHHHH
Confidence 999988766
No 230
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.8e-42 Score=336.06 Aligned_cols=202 Identities=28% Similarity=0.449 Sum_probs=175.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|. ..
T Consensus 4 ~l~~~~l~~~~------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~------~~ 68 (251)
T PRK09544 4 LVSLENVSVSF------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK------LR 68 (251)
T ss_pred EEEEeceEEEE------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc------cC
Confidence 58999999983 3457999999999999999999999999999999999999774 899999873 35
Q ss_pred EEEEcCCCCCCCCC--CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 117 SAYVTQDDTLITTL--TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 117 i~yv~Q~~~l~~~l--Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
++|++|++.+++.+ |+.+++.+.. ... .+++.++++.+|+.+..++++..|||||||||+||+||+.+
T Consensus 69 i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 69 IGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998877653 7777764321 111 24577899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+++||||||+|||+.++..+++.|++++++.|. |||++||++ +++.+.||++++|+ |+++..|+++++
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~--tiiivsH~~-~~i~~~~d~i~~l~-~~i~~~g~~~~~ 207 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDC--AVLMVSHDL-HLVMAKTDEVLCLN-HHICCSGTPEVV 207 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEC-CceEeeCCHHHH
Confidence 9999999999999999999999999999855455 999999996 57889999999996 479999988765
No 231
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-42 Score=346.11 Aligned_cols=221 Identities=24% Similarity=0.314 Sum_probs=184.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~ 112 (449)
...|+++|+++.| .. +.+.+|+|+||+|++||++||+||||||||||+++|+|+..+. .+.+|+|.++|.++..
T Consensus 78 ~~~i~~~nls~~y-~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWY-MN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEe-cC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3468999999983 21 2356999999999999999999999999999999999997531 1358999999998631
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHH-HHHHHHHHHHHHcCC----chhhCccCCCCChH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS-DKKERAEVTIREMGL----QDAMNTRIRRLSGG 180 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL----~~~~~~~~~~LSgG 180 (449)
.++.++||||++.+++ .|++||+.|+.... ..... ...+.+.++++.++| ....++++.+||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGG 229 (329)
T ss_pred cccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHH
Confidence 1357999999999886 69999999875432 12222 223456778888877 34568889999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.+|+||||||||+|||+.+...+.+.|+++++ ++ |||++||++ ..+.++||+|++|++|+++.
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~--Tii~iTH~l-~~i~~~~Driivl~~G~i~e 304 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KY--SIIIVTHSM-AQAQRISDETVFFYQGWIEE 304 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999974 34 999999996 57888999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 305 ~g~~~~l~ 312 (329)
T PRK14257 305 AGETKTIF 312 (329)
T ss_pred eCCHHHHh
Confidence 99998763
No 232
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.3e-42 Score=405.99 Aligned_cols=223 Identities=26% Similarity=0.409 Sum_probs=198.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||++.| . .+.+.+|+||||.|++||++||+||||||||||+|+|+|+++|+ +|+|+++|++...
T Consensus 1936 ~~L~v~nLsK~Y-~---~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257 1936 DILRLNELTKVY-S---GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNIS 2008 (2272)
T ss_pred ceEEEEEEEEEE-C---CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHH
Confidence 368999999983 1 11367999999999999999999999999999999999999874 8999999987631
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++.+||+||++.+++.+||+|++.+.+.++ +.+.++.+++++++++.+||.+.+|+++++|||||||||+||+||
T Consensus 2009 ~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~AL 2085 (2272)
T TIGR01257 2009 DVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIAL 2085 (2272)
T ss_pred HHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 2356999999999999999999999877664 334445566788999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f 271 (449)
+.+|+++||||||+|||+.++..+++.|++++++ |+ |||++||++ +++..+||++++|++|+++..|++++++..|
T Consensus 2086 i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~--TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GR--AVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 9999999999999999999999999999999754 55 999999996 6899999999999999999999999988766
Q ss_pred H
Q 044030 272 A 272 (449)
Q Consensus 272 ~ 272 (449)
.
T Consensus 2162 g 2162 (2272)
T TIGR01257 2162 G 2162 (2272)
T ss_pred C
Confidence 4
No 233
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.2e-42 Score=322.97 Aligned_cols=188 Identities=53% Similarity=0.859 Sum_probs=161.6
Q ss_pred eeEEEEeeEEEEeecC-cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeccc
Q 044030 36 VFLTWKDLTVTIVSNG-KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g~~~~~ 112 (449)
..++++||++.| ... ....+.+|+|+||++++||+++|+||||||||||+++|+|++ +| .+|+|.++|++...
T Consensus 2 ~~l~~~~ls~~~-~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~~ 77 (194)
T cd03213 2 VTLSFRNLTVTV-KSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLDK 77 (194)
T ss_pred cEEEEEeeEEEE-ecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCch
Confidence 358999999983 210 001257999999999999999999999999999999999998 66 48999999987642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|++||+.+...+ ..||||||||++||+|
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--------------------------------~~LS~G~~qrv~lara 125 (194)
T cd03213 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--------------------------------RGLSGGERKRVSIALE 125 (194)
T ss_pred HhhhheEEEccCcccCCCCCcHHHHHHHHHHh--------------------------------ccCCHHHHHHHHHHHH
Confidence 235699999999999999999999764321 0899999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|+.+|++++|||||+|||+.++..+.+.|++++++ |. |||++||++..++.++||++++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GR--TIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CC--EEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999754 55 99999999754688899999999999998764
No 234
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-44 Score=323.65 Aligned_cols=219 Identities=24% Similarity=0.377 Sum_probs=197.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+++++||+++| +.+.+|+++|++|++|.+++|+|||||||||||.+++.+++.+ +|+|+++|.+....
T Consensus 1 MI~i~nv~K~y------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~ 71 (252)
T COG4604 1 MITIENVSKSY------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSK 71 (252)
T ss_pred CeeehhhhHhh------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChH
Confidence 46889999983 6789999999999999999999999999999999999999775 99999999986421
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 114 --YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 114 --~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.+.++.+-|+..+...+||+|-+.|+...+. .+...++.+..+++.++.++|++..|++..+||||||||..||+.+
T Consensus 72 ~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 72 ELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee
Confidence 2467889999999999999999999865442 3444567788899999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+++.+.++||||.++||...+..+|+.|++++++.|+ ||+++.||.. .+..++|+|+-|++|+++..|+++++.
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~K--tiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGK--TIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCC--eEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhc
Confidence 9999999999999999999999999999999999877 9999999975 688899999999999999999999875
No 235
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=8.8e-43 Score=331.25 Aligned_cols=202 Identities=30% Similarity=0.472 Sum_probs=169.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . .+.+.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 3 l~~~~l~~~~-~---~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 3 IEFRNVSFSY-P---NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPAD 75 (220)
T ss_pred EEEEEEEEEc-C---CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHH
Confidence 7899999983 1 11256999999999999999999999999999999999998774 8999999986521
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC-----------CCCChHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----------RRLSGGQ 181 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----------~~LSgGe 181 (449)
..+.++|++|++.+++ .||.||+.+.... .. .+.+.++++.+++.+..++.+ .+|||||
T Consensus 76 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~ 145 (220)
T cd03245 76 LRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQ 145 (220)
T ss_pred HHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHH
Confidence 1246999999998887 5999999764211 11 234567888889987777654 6999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|+++||||||+|||+.++..+++.|+++++ +. |||++||++. .+ ++||++++|++|++++.
T Consensus 146 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 146 RQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DK--TLIIITHRPS-LL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CC--EEEEEeCCHH-HH-HhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999999974 24 9999999974 44 79999999999999875
Q ss_pred c
Q 044030 262 G 262 (449)
Q Consensus 262 g 262 (449)
|
T Consensus 220 ~ 220 (220)
T cd03245 220 G 220 (220)
T ss_pred C
Confidence 4
No 236
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-42 Score=334.39 Aligned_cols=217 Identities=24% Similarity=0.350 Sum_probs=182.2
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKA-- 111 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~-- 111 (449)
..|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|.. +.+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 15 QKSEVNKLNFYY------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred ceEEEEEEEEEE------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 458999999983 34579999999999999999999999999999999999986521 25899999987532
Q ss_pred -------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHHHcCCc----hhhCccCCCCCh
Q 044030 112 -------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK-SDKKERAEVTIREMGLQ----DAMNTRIRRLSG 179 (449)
Q Consensus 112 -------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 179 (449)
...+.++|++|++.+++. |++||+.++.... .... ...++++.++++.+++. +..++.+..|||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH
Confidence 113469999999999886 9999998875432 1111 22345677888888763 566888999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ +++.++||++++|++|+++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~--tiiivth~~-~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KV--TILIVTHNM-QQAARVSDYTAYMYMGELI 239 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CC--EEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999973 34 999999996 5788999999999999999
Q ss_pred EecChhhH
Q 044030 260 YFGPATAA 267 (449)
Q Consensus 260 ~~g~~~~~ 267 (449)
..|+.++.
T Consensus 240 ~~g~~~~~ 247 (265)
T PRK14252 240 EFGATDTI 247 (265)
T ss_pred EeCCHHHH
Confidence 99988765
No 237
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-42 Score=321.33 Aligned_cols=188 Identities=48% Similarity=0.795 Sum_probs=160.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-ccC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-AYG 115 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~~~ 115 (449)
.|+++|+++.| ..+ .+++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+.+|+|.++|++... ..+
T Consensus 3 ~l~~~~l~~~~-~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~~~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYTV-PVK-GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPLDKNFQR 79 (192)
T ss_pred EEEEeeeEEEe-cCC-CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEehHHHhhh
Confidence 57899999983 211 1125799999999999999999999999999999999998642 1358999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
.++|++|++.+++.+|++||+.+...+ + .||||||||++||+||+.+|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~-------------~LSgGe~qrv~la~al~~~p 127 (192)
T cd03232 80 STGYVEQQDVHSPNLTVREALRFSALL-------------------R-------------GLSVEQRKRLTIGVELAAKP 127 (192)
T ss_pred ceEEecccCccccCCcHHHHHHHHHHH-------------------h-------------cCCHHHhHHHHHHHHHhcCC
Confidence 699999999999999999999875311 0 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC-CeEEEec
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA-GQTVYFG 262 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~-G~iv~~g 262 (449)
++++|||||+|||+.++..+++.|+++++ .|. |||++||++..++...||++++|++ |++++.|
T Consensus 128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~--tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQ--AILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCC--EEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999975 455 9999999974346889999999999 9999865
No 238
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=6.3e-42 Score=331.19 Aligned_cols=217 Identities=27% Similarity=0.323 Sum_probs=177.2
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeccc---
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g~~~~~--- 112 (449)
++++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+. +| .+|+|.++|.+...
T Consensus 2 i~~~nl~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 2 LSIKDLHVSV------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLELSP 72 (248)
T ss_pred eEEEEEEEEe------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccCCH
Confidence 7899999983 3457999999999999999999999999999999999995 34 58999999976421
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHh-ccC--CC-CCCHHHHHHHHHHHHHHcCCc-hhhCccCC-CCChHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQ-LQL--PD-TMPKSDKKERAEVTIREMGLQ-DAMNTRIR-RLSGGQKR 183 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~~~--~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~LSgGerq 183 (449)
....++|++|++.+++.+|+.+++.+... ... .. ........+.++++++.+++. +..++.+. .|||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 152 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKK 152 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHH
Confidence 12359999999998888888777654321 110 00 011122345678899999995 56777775 89999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEec
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYFG 262 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~g 262 (449)
||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|. |||++||++ ..+... +|++++|++|++++.|
T Consensus 153 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~--tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 153 RNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKR--SFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999974 444 999999996 456666 8999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++.+
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 88754
No 239
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-42 Score=340.65 Aligned_cols=222 Identities=23% Similarity=0.348 Sum_probs=183.4
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKA 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~ 111 (449)
.+..|+++||++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|++++. .+.+|+|.++|.++.
T Consensus 42 ~~~~l~i~nl~~~~------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 42 GDAKLSVEDLDVYY------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCceEEEEEEEEEe------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 34579999999983 3457999999999999999999999999999999999998531 135899999998653
Q ss_pred c-------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC---------CCCC-HHHHHHHHHHHHHHcCCc----hhh
Q 044030 112 L-------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP---------DTMP-KSDKKERAEVTIREMGLQ----DAM 170 (449)
Q Consensus 112 ~-------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~----~~~ 170 (449)
. .++.++|++|++.+++. ||+||+.++...... .... ....++.+.++++.+++. +..
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 1 12469999999988875 999999987542100 0011 122345688899999884 466
Q ss_pred CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
++++.+|||||||||+||+||+.+|+||||||||+|||+.++..+.+.|+++++ +. |||++||++ ..+..+||++
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~--tiiivtH~~-~~i~~~~d~i 269 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EY--TVVVVTHNM-QQAARISDQT 269 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CC--EEEEEEcCH-HHHHHhcCEE
Confidence 888999999999999999999999999999999999999999999999999974 24 999999996 5788999997
Q ss_pred -EEeeCCeEEEecChhhH
Q 044030 251 -CLLSAGQTVYFGPATAA 267 (449)
Q Consensus 251 -~~l~~G~iv~~g~~~~~ 267 (449)
++|++|+++..|+++++
T Consensus 270 ~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKI 287 (305)
T ss_pred EEEecCCEEEEeCCHHHH
Confidence 57899999999998765
No 240
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.9e-42 Score=325.07 Aligned_cols=194 Identities=28% Similarity=0.357 Sum_probs=169.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
|+++||++.| +++.+|+|+||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~i~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCER------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEe------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHh
Confidence 4689999983 3467999999999999999999999999999999999998774 8999999987531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+|++||+.+.... . ..++++++++.+|+.+..++++.+||||||||++||+||+.
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 142 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLS 142 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhc
Confidence 35699999999999999999999875321 0 23567889999999998999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
+|+++||||||+|||+.++..+.+.|+++++ .|. |+|++||++. ++...|++++++
T Consensus 143 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGG--MVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999999999999874 355 9999999974 678899999887
No 241
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.7e-43 Score=381.88 Aligned_cols=215 Identities=28% Similarity=0.437 Sum_probs=177.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.++++||+|.| . ..+..+|+|+|++|++||.+||+|+||||||||+|+|+|++.|. +|+|.+||.+...
T Consensus 470 g~I~~~nvsf~y-~---~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 470 GEIEFENVSFRY-G---PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDL 542 (709)
T ss_pred ceEEEEEEEEEe-C---CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCH
Confidence 468999999994 2 13347999999999999999999999999999999999999874 9999999998632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.+|||+|++.+|.. |++||+.++... .+.++..+ -+.+.+..+ |++........+|||||||
T Consensus 543 ~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~-----~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 543 ASLRRQVGYVLQDPFLFSG-SIRENIALGNPE-----ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred HHHHhheeEEcccchhhcC-cHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 24689999999999988 999999886421 22222111 122333332 3444444555789999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||+++|+||+||||||+||+.+...|.+.|.++.+ |+|+|+++|.+ ...+.||+|++|++|+++.+|+
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~----~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~~gs 690 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ----GRTVIIIAHRL--STIRSADRIIVLDQGKIVEQGS 690 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc----CCeEEEEEccc--hHhhhccEEEEccCCceeccCC
Confidence 99999999999999999999999999999999999999973 45999999997 4688999999999999999999
Q ss_pred hhhHHH
Q 044030 264 ATAANE 269 (449)
Q Consensus 264 ~~~~~~ 269 (449)
.+++.+
T Consensus 691 ~~ell~ 696 (709)
T COG2274 691 HEELLA 696 (709)
T ss_pred HHHHHH
Confidence 988764
No 242
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-42 Score=333.21 Aligned_cols=211 Identities=28% Similarity=0.402 Sum_probs=171.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . +.+.+|+|+||+|++|++++|+||||||||||+++|+|+.+| .+|+|.++|.+...
T Consensus 1 l~~~~l~~~~-~----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAY-D----PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEe-C----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEhhhCCHHH
Confidence 4688999883 1 235699999999999999999999999999999999999877 48999999986531
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhCccCCCCChHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREM--GLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv 185 (449)
..+.++|++|++.+++ .|+.||+.+.... ........ .+.+.++.+ +++...++++..|||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl 146 (236)
T cd03253 73 LRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRV 146 (236)
T ss_pred HHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence 1246999999998886 5999999875321 11111111 123344444 555666777899999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|+++||||||+|||+.++..+.+.|++++ + |. |||++||++. .+. .||++++|++|++++.|+++
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~ 220 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GR--TTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHE 220 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CC--EEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHH
Confidence 99999999999999999999999999999999999997 4 55 9999999974 564 59999999999999998876
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
+..
T Consensus 221 ~~~ 223 (236)
T cd03253 221 ELL 223 (236)
T ss_pred HHh
Confidence 553
No 243
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-42 Score=324.29 Aligned_cols=198 Identities=28% Similarity=0.367 Sum_probs=169.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--c
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--A 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~ 113 (449)
+.++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... .
T Consensus 1 m~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 1 MMLEGEDLACVR------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDV 71 (207)
T ss_pred CEEEEEeEEEEE------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeCcchhh
Confidence 358999999983 345799999999999999999999999999999999999876 48999999986432 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+||.||+.+..... .. ..+.+.++++.+||.+..+++++.||||||||++||+||+.
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFL---GG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhc
Confidence 346899999988888999999998765432 11 12347889999999988899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+|+++||||||+|||+.++..+++.|++++++ |. |||++||++ .++.. |+++.+..
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQ-GG--IVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCc-hhhcc--CcEEeecC
Confidence 99999999999999999999999999998754 55 999999997 45554 88887743
No 244
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.3e-42 Score=326.40 Aligned_cols=206 Identities=27% Similarity=0.389 Sum_probs=170.7
Q ss_pred EEEEeeEEEEeecCc-cc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--ecc
Q 044030 38 LTWKDLTVTIVSNGK-KG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN--GH--KKA 111 (449)
Q Consensus 38 l~~~nls~~~~~~~~-~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~--g~--~~~ 111 (449)
|+++||++.| .... .+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++ |. +..
T Consensus 2 l~~~~l~~~~-~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 2 LEVEDLSKTF-TLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLA 77 (224)
T ss_pred EEEEeeEEEe-ecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchh
Confidence 7899999983 2110 11 247999999999999999999999999999999999998774 8999998 42 321
Q ss_pred c---------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHH
Q 044030 112 L---------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQ 181 (449)
Q Consensus 112 ~---------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGe 181 (449)
. ..+.++|++|++.+++.+||.|++.+..... ........+++.++++.+|+.+ ..++++.+|||||
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPATFSGGE 154 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence 0 1246999999999999999999998865432 2233344567888999999976 4688999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
|||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++ ..+..+||+++.+.
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGA--ALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCH-HHHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999974 355 999999995 56778999998763
No 245
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.5e-42 Score=400.76 Aligned_cols=222 Identities=27% Similarity=0.375 Sum_probs=197.1
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|+++||++.| . .+++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 926 ~~~L~I~nLsK~y-~---~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 926 VPGVCVKNLVKIF-E---PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNL 998 (2272)
T ss_pred CceEEEEeEEEEe-c---CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchH
Confidence 3579999999983 2 13467999999999999999999999999999999999999874 8999999987632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.+||++|++.+++.+||+||+.|.++++ +.+.++.+++++++++.+||.+.+++++++|||||||||+||+|
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 1356999999999999999999999987664 23344556778999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEF 270 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~ 270 (449)
|+.+|+++||||||+|||+.++..++++|++++ + |+ |||++||++ +++..+||++++|++|+++..|+++.++..
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~--TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GR--TIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999995 4 44 999999996 588899999999999999999999988765
Q ss_pred H
Q 044030 271 F 271 (449)
Q Consensus 271 f 271 (449)
|
T Consensus 1151 ~ 1151 (2272)
T TIGR01257 1151 F 1151 (2272)
T ss_pred c
Confidence 5
No 246
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-42 Score=374.71 Aligned_cols=211 Identities=25% Similarity=0.368 Sum_probs=172.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| + +++++|+|+||++++|+.+||+||||||||||+++|+|++ |. +|+|.+||.+...
T Consensus 349 ~i~~~~vsf~~-~----~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 349 TIEAEDLEILS-P----DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPE 419 (588)
T ss_pred eEEEEeeEEec-c----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHH
Confidence 59999999863 2 3467999999999999999999999999999999999998 63 8999999987632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
.++.++||+|++.+|+. |++||+.++.. ..+.++..+. +++.++.+ |++.........||||||||
T Consensus 420 ~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQR 493 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQR 493 (588)
T ss_pred HHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 23579999999999987 99999988631 1233322211 22333333 44433444456899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++|||||+++|++++||||||+||+.++..|.+.|+++.+ ++|+|++||+++ ....||+|++|++|+++..|+.
T Consensus 494 ialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~----~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~ 567 (588)
T PRK11174 494 LALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR----RQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDY 567 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC----CCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCH
Confidence 9999999999999999999999999999999999999863 449999999973 4677999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 568 ~eL~ 571 (588)
T PRK11174 568 AELS 571 (588)
T ss_pred HHHH
Confidence 8764
No 247
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-42 Score=366.75 Aligned_cols=223 Identities=25% Similarity=0.369 Sum_probs=185.4
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||++.| . ..+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| +.+|+|.++|++...
T Consensus 258 ~~l~~~~l~~~~-~--~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 258 VILEVRNLTAWD-P--VNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG--RWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred ceEEEecCcccc-c--cccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC--CCCcEEEECCEECCCCCH
Confidence 358999999872 1 11235699999999999999999999999999999999999873 148999999987531
Q ss_pred ---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccCCC-C-CCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHH
Q 044030 113 ---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQLPD-T-MPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~~-~-~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++ .+++.+||.||+.+........ . .+..+.+++++++++.+++. +..++++++|||||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 124589999995 4788899999998763211100 0 12333456788999999996 5789999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..++++|++++++ |. |||++|||+ .++.++||++++|++|+++..|+
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~--tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GV--AIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999854 55 999999996 57899999999999999999987
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 489 ~~~~ 492 (506)
T PRK13549 489 NHNL 492 (506)
T ss_pred cccC
Confidence 7643
No 248
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.2e-42 Score=336.68 Aligned_cols=208 Identities=23% Similarity=0.332 Sum_probs=177.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| .. +...+|+|+||+|++||+++|+||||||||||+++|+|+++ . +|+|+++|.+...
T Consensus 2 ~i~~~nls~~~-~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKY-TE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEe-CC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHH
Confidence 37899999983 21 23569999999999999999999999999999999999985 2 7999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCC-----------CChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR-----------LSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~-----------LSgG 180 (449)
.++.++|+||++.+|+. |+++|+.... ... .+++.+.++.+||.+..++.+.+ ||||
T Consensus 74 ~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G 142 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142 (275)
T ss_pred HHhhhEEEECCCcccchh-hHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence 13579999999999985 9999995321 111 23467788899999888888876 9999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.+|+|++|||||++||+.+...+.+.|+++. . ++ |||++||++ ..+. .||+|++|++|++++
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~-~~--tii~isH~~-~~i~-~~dri~vl~~G~i~~ 216 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-A-DC--TVILSEHRI-EAML-ECQRFLVIEENKVRQ 216 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEECCH-HHHH-hCCEEEEecCCeEee
Confidence 9999999999999999999999999999999999999999875 3 44 999999997 4555 599999999999999
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.|+++++..
T Consensus 217 ~g~~~~l~~ 225 (275)
T cd03289 217 YDSIQKLLN 225 (275)
T ss_pred cCCHHHHhh
Confidence 999988753
No 249
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.9e-42 Score=320.75 Aligned_cols=193 Identities=27% Similarity=0.341 Sum_probs=165.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSR------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEE------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHh
Confidence 4688999883 3467999999999999999999999999999999999998774 8999999987431 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+|+.||+.+...... . + ++.+.++++.+|+.+..++++..||||||||++||+|++.
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 144 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLS 144 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhc
Confidence 2468999999989998999999988654321 1 1 3457889999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL 252 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~ 252 (449)
+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++. .-.|++++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 145 RAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGG--IVLLTTHQDL---GLVEARELR 197 (198)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCC--EEEEEEcccc---cccceEEee
Confidence 9999999999999999999999999999974 454 9999999974 234677654
No 250
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-42 Score=365.76 Aligned_cols=214 Identities=22% Similarity=0.372 Sum_probs=181.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++|+++. + + .+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 264 ~~l~~~~l~~~-~-----~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 264 TVFEVRNVTSR-D-----R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSP 332 (510)
T ss_pred cEEEEeCcccc-C-----C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCH
Confidence 36999999975 1 1 3899999999999999999999999999999999999774 8999999986531
Q ss_pred ---ccCcEEEEcCC---CCCCCCCCHHHHHHHHHhcc---CCC--C-CCHHHHHHHHHHHHHHcCCc-hhhCccCCCCCh
Q 044030 113 ---AYGTSAYVTQD---DTLITTLTVKEAVYYSAQLQ---LPD--T-MPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSG 179 (449)
Q Consensus 113 ---~~~~i~yv~Q~---~~l~~~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg 179 (449)
..+.++|++|+ ..+++.+||.||+.+....+ ... + ......+++++++++.+|+. +..++++++|||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSG 412 (510)
T ss_pred HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCCh
Confidence 12469999998 46889999999998753221 000 1 11223345678999999997 789999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++|||+ .++..+||++++|++|+++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~--tvi~vsHd~-~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGK--VILMVSSEL-PEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCC--EEEEEcCCH-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999985 455 999999996 5789999999999999999
Q ss_pred EecCh
Q 044030 260 YFGPA 264 (449)
Q Consensus 260 ~~g~~ 264 (449)
..++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88765
No 251
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.6e-42 Score=326.52 Aligned_cols=202 Identities=23% Similarity=0.368 Sum_probs=167.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . .+.+.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+...
T Consensus 3 l~~~~l~~~~-~---~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 3 IEFKNVSLRY-R---PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVDISKIGLHD 75 (221)
T ss_pred EEEEEEEEec-C---CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhHhCCHHH
Confidence 7899999983 2 1235799999999999999999999999999999999999877 48999999987531
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------CccCCCCChHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSGGQ 181 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSgGe 181 (449)
..+.++|++|++.+++ .||+||+.+... .. .+++.+.++.+++.+.. +..+..|||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~ 144 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQ 144 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHH
Confidence 1356999999998776 599999864321 11 12345556666665443 56889999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++. ++. .||++++|++|++++.
T Consensus 145 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 145 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DC--TVLTIAHRLD-TII-DSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEeCCHH-HHh-hCCEEEEEECCeEEec
Confidence 999999999999999999999999999999999999999986 3 34 9999999974 565 5999999999999988
Q ss_pred cC
Q 044030 262 GP 263 (449)
Q Consensus 262 g~ 263 (449)
|+
T Consensus 219 ~~ 220 (221)
T cd03244 219 DS 220 (221)
T ss_pred CC
Confidence 75
No 252
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-42 Score=352.24 Aligned_cols=216 Identities=27% Similarity=0.433 Sum_probs=193.6
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...++++||+++| +..++|+||||++.+||++||+|.||||||||+|+|+|.++|+ +|+|+++|++...
T Consensus 6 ~~ll~~~~i~K~F------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~s 76 (500)
T COG1129 6 PPLLELRGISKSF------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSS 76 (500)
T ss_pred cceeeeecceEEc------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCC
Confidence 3468999999983 6788999999999999999999999999999999999999875 9999999997542
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
....|+.|+|+..+.|+|||.||+.++.....+ .-++.+...+++.++|+.+|+....++++++||+||||.|.|
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 125699999999999999999999888665432 235667778889999999999655899999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|+||..+++|||||||||.|+......+++.++++++ .| .+||++||.+ ++++++||++.||++|+.+..++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~G--v~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QG--VAIIYISHRL-DEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CC--CEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999985 44 4999999996 69999999999999999999887
No 253
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-42 Score=355.42 Aligned_cols=212 Identities=26% Similarity=0.416 Sum_probs=179.9
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
.+++.++.+|+++.| . +++++++|+|+++++|+.+||+|+||||||||+++|+|+.+| ++|+|.+||.+...
T Consensus 316 ~~~~ei~~~~l~~~y-~----~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~---~~G~I~vng~~l~~ 387 (559)
T COG4988 316 EPPIEISLENLSFRY-P----DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP---TQGEIRVNGIDLRD 387 (559)
T ss_pred CCCceeeecceEEec-C----CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC---CCceEEECCccccc
Confidence 346677788999983 2 334899999999999999999999999999999999999987 49999999987532
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc------cC----CCC
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT------RI----RRL 177 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~------~~----~~L 177 (449)
.+++++||+|++.+|+. |++||+.++.. .. .++.+.++++..|+.+..+. .+ .+|
T Consensus 388 l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~L 457 (559)
T COG4988 388 LSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DA----SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGL 457 (559)
T ss_pred cCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cC----CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCC
Confidence 24789999999999998 99999988632 11 23456677777776554443 22 579
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 178 SgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
||||+|||++||||+.+++++++||||++||.++...|.+.|.++++ ++|+|++||++ ....-+|+|++|++|+
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~----~ktvl~itHrl--~~~~~~D~I~vld~G~ 531 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK----QKTVLVITHRL--EDAADADRIVVLDNGR 531 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh----CCeEEEEEcCh--HHHhcCCEEEEecCCc
Confidence 99999999999999999999999999999999999999999999995 44999999996 3567799999999999
Q ss_pred EEEecChhhHH
Q 044030 258 TVYFGPATAAN 268 (449)
Q Consensus 258 iv~~g~~~~~~ 268 (449)
++..|..+++.
T Consensus 532 l~~~g~~~~L~ 542 (559)
T COG4988 532 LVEQGTHEELS 542 (559)
T ss_pred eeccCCHHHHh
Confidence 99999998774
No 254
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=6.1e-42 Score=318.53 Aligned_cols=178 Identities=30% Similarity=0.491 Sum_probs=152.7
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-------ccCcEEEEcCCCC-
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-------AYGTSAYVTQDDT- 125 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-------~~~~i~yv~Q~~~- 125 (449)
+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..+.++|++|++.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 79 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhh
Confidence 4567999999999999999999999999999999999998774 8999999987531 1246999999973
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 126 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
.+...||+||+.+..... ..+..+..+++.++++.+||.+..++++.+||||||||++||+||+.+|++++|||||+
T Consensus 80 ~~~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 156 (190)
T TIGR01166 80 QLFAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTA 156 (190)
T ss_pred ccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 233479999999865432 22334445678899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
|||+.++..+.+.|++++++ |. |||++||++.
T Consensus 157 ~LD~~~~~~~~~~l~~~~~~-~~--tili~sH~~~ 188 (190)
T TIGR01166 157 GLDPAGREQMLAILRRLRAE-GM--TVVISTHDVD 188 (190)
T ss_pred cCCHHHHHHHHHHHHHHHHc-CC--EEEEEeeccc
Confidence 99999999999999999753 55 9999999963
No 255
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-42 Score=312.97 Aligned_cols=169 Identities=32% Similarity=0.552 Sum_probs=151.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRY------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEE------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhh
Confidence 4689999983 2346999999999999999999999999999999999998774 8999999987531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
++.++|++|++.+++.+|+.||+. ||||||||++||+||+.
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~---------------------------------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK---------------------------------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh---------------------------------------cCHHHHHHHHHHHHHHc
Confidence 356999999999999999999973 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+|++++|||||+|||+.++..+.+.|++++++ |. |+|++||++ .++...||++++|++|++
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~--tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKE-GK--TILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CC--EEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999865 55 999999996 578889999999999974
No 256
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.6e-42 Score=362.87 Aligned_cols=207 Identities=24% Similarity=0.294 Sum_probs=178.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-c--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-A-- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~-- 113 (449)
+|+++|+++.| +++.+|+|+||++++|++++|+||||||||||||+|+|+++|+ +|+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRL------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEc------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHH
Confidence 58999999983 3456999999999999999999999999999999999998774 8999999875421 1
Q ss_pred --cCcEEEEcCCCCC--C------CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 114 --YGTSAYVTQDDTL--I------TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 114 --~~~i~yv~Q~~~l--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
.+.++|++|++.. + ..+||.|++.+. ...++++.++++.+||.+..++++.+|||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 142 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKYLSTGETR 142 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHH
Confidence 2358999998643 1 146888876431 122456889999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++ ..+.++||++++|++|+++..|+
T Consensus 143 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~--tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 218 (490)
T PRK10938 143 KTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GI--TLVLVLNRF-DEIPDFVQFAGVLADCTLAETGE 218 (490)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CC--eEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999854 55 999999997 57889999999999999999999
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
+++.
T Consensus 219 ~~~~ 222 (490)
T PRK10938 219 REEI 222 (490)
T ss_pred HHHH
Confidence 8765
No 257
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=329.38 Aligned_cols=194 Identities=29% Similarity=0.436 Sum_probs=176.2
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec---------ccccCcEEEEcCCCCCCCCC
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK---------ALAYGTSAYVTQDDTLITTL 130 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~---------~~~~~~i~yv~Q~~~l~~~l 130 (449)
=+++|..+.-.++||-|+||||||||+|+|+|+.+|+ +|.|.+||.-. ...++++||||||..+||++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 3578888887899999999999999999999999885 89999999742 11346899999999999999
Q ss_pred CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 044030 131 TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210 (449)
Q Consensus 131 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~ 210 (449)
||+.||.|+.... .....+++++.||+++.+++++..|||||||||+|+|||++.|++|+||||.+.||..
T Consensus 92 tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 92 TVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred EEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence 9999999986431 2345788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 211 ASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 211 ~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
-+.+++-.|.+++++.+. .|+.+||.+ +|+.+++|+|++|++|++..+|+.+++.
T Consensus 163 RK~EilpylERL~~e~~I--PIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 163 RKREILPYLERLRDEINI--PILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred hhhHHHHHHHHHHHhcCC--CEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHh
Confidence 999999999999988876 999999996 6999999999999999999999998764
No 258
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.4e-42 Score=328.64 Aligned_cols=208 Identities=25% Similarity=0.424 Sum_probs=170.9
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
.-.++++|+++.| .. .++..+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 9 ~~~l~~~~l~~~~-~~--~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAY-PT--RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEe-CC--CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcC
Confidence 3468999999983 21 11246999999999999999999999999999999999998774 8999999976421
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH---HHHHHHHHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK---SDKKERAEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
..+.++|++|++.+++ .||+||+.++.... .... ......+.++++.+ |+.+..++++.+||||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qr 158 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQR 158 (226)
T ss_pred HHHHHhhEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 1346999999998876 59999998753211 1100 11112356788888 88888899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|+||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++. ++. .||++++|++|++
T Consensus 159 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RR--TVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CC--EEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999863 34 9999999974 564 5999999999874
No 259
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-42 Score=301.57 Aligned_cols=215 Identities=27% Similarity=0.383 Sum_probs=189.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+.|.++|+++.| |..++|.|++++.++||.+.++||||||||||++.|.=+..| .+|+..+-|...+.
T Consensus 1 msirv~~in~~y------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p---~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 1 MSIQLNGINCFY------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKT 71 (242)
T ss_pred CceEEccccccc------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC---CCCeEEecccccccccC
Confidence 357899999973 677899999999999999999999999999999999987766 49999998754221
Q ss_pred --------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH
Q 044030 113 --------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 --------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 184 (449)
.++.+|+|+|+..++|.+||.||+.-+. ++. .++++++.+.++.++++.+.|.+.+|+.+-.|||||+||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqr 149 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQR 149 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCceecccchhhh
Confidence 1346899999999999999999996553 221 256788888899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+|||||+.+|.+|++||||++|||.-..+++++|++++. .|. |-+++||.. ....+.+.+|+.|.+|+|+..|+.
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgi--tqvivthev-~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGI--TQVIVTHEV-EVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCc--eEEEEEeeh-hHHHhhhhheEeeecCeeEeecch
Confidence 9999999999999999999999999999999999999994 555 999999996 467889999999999999999986
Q ss_pred h
Q 044030 265 T 265 (449)
Q Consensus 265 ~ 265 (449)
+
T Consensus 226 ~ 226 (242)
T COG4161 226 S 226 (242)
T ss_pred h
Confidence 4
No 260
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-41 Score=349.68 Aligned_cols=212 Identities=23% Similarity=0.293 Sum_probs=179.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
+++++||++.+ . ....+.+|+|+||++++|+++||+|||||||||||++|+|+++|. +|+|.++|.+.
T Consensus 21 mL~lknL~~~~-~--~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~------ 88 (549)
T PRK13545 21 FDKLKDLFFRS-K--DGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA------ 88 (549)
T ss_pred eeEEEEEEEec-C--CCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee------
Confidence 58899998872 2 111246999999999999999999999999999999999999774 89999999752
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++.+...+++.+|++||+.+..... ..+..+..+++.++++.+++.+..+++++.||||||||++||+||+.+|+
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 2223445677889999998765332 22344455667889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
+|||||||+|||+.++..+++.|+++++ .|. |||++||++ .++..+||++++|++|++++.|+++++..
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~--TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFKE-QGK--TIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHh-CCC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999974 455 999999996 57889999999999999999999887654
No 261
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-41 Score=312.54 Aligned_cols=171 Identities=35% Similarity=0.528 Sum_probs=151.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| +++.+++|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 1 i~~~~l~~~~------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRY------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEE------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccchhH
Confidence 4689999883 345799999999999999999999999999999999999877 48999999986531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|++||+.+. ||||||||++||+|
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------------------------------------lS~G~~qr~~la~a 114 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALG-------------------------------------LSGGQQQRVALARA 114 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeec-------------------------------------CCHHHHHHHHHHHH
Confidence 135799999999999899999997532 99999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|+.+|++++|||||+|||+.++..+.+.|++++++.|. |+|++||++ .++..+||++++|++|+
T Consensus 115 l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 115 LAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI--TVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999865455 999999996 57888999999999885
No 262
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-41 Score=318.05 Aligned_cols=192 Identities=24% Similarity=0.334 Sum_probs=165.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|+++|.+... .
T Consensus 2 l~~~~l~~~~------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDY------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEe------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHH
Confidence 7899999983 3457999999999999999999999999999999999998774 8999999986531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|+..+++.+||.||+.+..... .. ...+.++++.+++.+..++++..||||||||++||+|++.
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~ 144 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMS 144 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhc
Confidence 356999999999989999999998864221 11 2467889999999888899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++. ....+|...
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~--tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGG--AVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999874 455 9999999963 446677544
No 263
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.5e-41 Score=360.50 Aligned_cols=221 Identities=25% Similarity=0.362 Sum_probs=183.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++|+++.| .. .+++.+|+|+||++++||+++|+||||||||||||+|+|+++|. .+|+|.++|++...
T Consensus 256 ~~l~~~~l~~~~-~~--~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWD-VI--NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCcccc-cc--cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCCH
Confidence 469999999872 10 02356999999999999999999999999999999999998741 48999999987531
Q ss_pred ---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHH
Q 044030 113 ---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQLP--DTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerq 183 (449)
.++.++|++|+. .+++.+||+||+.++..-... ........++++.++++.+++.+ ..+++++.|||||||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 410 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQ 410 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHH
Confidence 134699999995 588999999999875321110 01122334567889999999974 689999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ .++.++||++++|++|+++..++
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~--tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GV--AIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999854 55 999999997 57899999999999999998775
Q ss_pred hh
Q 044030 264 AT 265 (449)
Q Consensus 264 ~~ 265 (449)
.+
T Consensus 487 ~~ 488 (500)
T TIGR02633 487 NH 488 (500)
T ss_pred cc
Confidence 43
No 264
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.9e-41 Score=316.82 Aligned_cols=186 Identities=30% Similarity=0.363 Sum_probs=158.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeccc---
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g~~~~~--- 112 (449)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+. +| .+|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSV------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEe------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCCH
Confidence 4689999983 2357999999999999999999999999999999999984 44 58999999987532
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
....++|++|++.+++.+|+.+++ +.....||||||||++||+
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~~~~LS~G~~qrv~lar 117 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYVNEGFSGGEKKRNEILQ 117 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhccccCCHHHHHHHHHHH
Confidence 123599999999988888888766 1123579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh-hcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ-LFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~-~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++++|||||+|||+.++..+.+.|+++++ .+. |||++||++. .+.. +||++++|++|++++.|+.+ +.
T Consensus 118 al~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~--tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~-~~ 192 (200)
T cd03217 118 LLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGK--SVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE-LA 192 (200)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-HH
Confidence 99999999999999999999999999999999974 344 9999999974 6666 79999999999999999554 44
Q ss_pred HHH
Q 044030 269 EFF 271 (449)
Q Consensus 269 ~~f 271 (449)
+.+
T Consensus 193 ~~~ 195 (200)
T cd03217 193 LEI 195 (200)
T ss_pred hhh
Confidence 333
No 265
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=360.51 Aligned_cols=214 Identities=26% Similarity=0.422 Sum_probs=181.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|+++. +|+|+||+|++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|++...
T Consensus 256 ~~l~~~~l~~~-----------~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 256 VRLKVDNLSGP-----------GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSP 321 (501)
T ss_pred cEEEEeCcccC-----------CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 35788888742 699999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHH
Q 044030 113 ---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQLP---DTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGer 182 (449)
.++.++||+|++ .+++.+||.||+.+....... ......+.+++++++++.+|+. +..++++..||||||
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHH
Confidence 124699999996 578889999999875321100 0012233456788999999995 678999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++|||+ .++.++||++++|++|+++..|
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~--tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GL--SIILVSSEM-PEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CC--EEEEEcCCH-HHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999999854 55 999999996 5789999999999999999998
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87643
No 266
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.5e-41 Score=322.49 Aligned_cols=196 Identities=27% Similarity=0.443 Sum_probs=165.6
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCC--CCCCHHHHHHHHHh
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI--TTLTVKEAVYYSAQ 141 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~ 141 (449)
|++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.....+.++|++|++.++ ..+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 578999999999999999999999999998774 8999999987533345699999998764 34799999987532
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044030 142 LQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220 (449)
Q Consensus 142 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~ 220 (449)
.... .........+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..+.+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1100 001122334568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 221 ~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+++++ |. |||++||++ .++.++||+++++ +|++++.|+++++
T Consensus 158 ~~~~~-~~--tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 158 ELAGA-GT--AILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHc-CC--EEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 99743 55 999999996 5788999999999 8999999988765
No 267
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=365.83 Aligned_cols=210 Identities=26% Similarity=0.385 Sum_probs=173.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| . .+++.+|+|+|++|++||.+||+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 341 ~i~~~~vsf~y-~---~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 341 DIEFRNVTFTY-P---GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLA 413 (582)
T ss_pred eEEEEEEEEec-C---CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHH
Confidence 59999999983 2 12367999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-------hCccC----CCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-------MNTRI----RRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~----~~LSgG 180 (449)
.++.++||||++.+|+. |++||+.++.. ...+. +++.++++..|+.+. .|+.+ .+||||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 414 SLRNQVALVSQNVHLFND-TIANNIAYART----EQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred HHHhhceEEccCceeecc-hHHHHHhcCCC----CCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 23679999999999986 99999977521 11222 334555555554332 23333 679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|++++||||||+||+.++..+++.|+++.+ ++|+|++||++ ...+.||+|++|++|+++.
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~----~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e 558 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK----NRTSLVIAHRL--STIEKADEILVVEDGEIVE 558 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC----CCEEEEEecch--HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999863 34999999997 3567899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 559 ~g~~~~l~ 566 (582)
T PRK11176 559 RGTHAELL 566 (582)
T ss_pred eCCHHHHH
Confidence 99988764
No 268
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.4e-41 Score=364.68 Aligned_cols=207 Identities=21% Similarity=0.308 Sum_probs=175.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| . +++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 340 ~i~~~~v~f~y-~----~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 340 RIDIDNVSFAY-R----DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHS 411 (592)
T ss_pred eEEEEEEEEEe-C----CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHH
Confidence 58999999983 2 2356999999999999999999999999999999999999874 8999999987642
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-------Cc----cCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-------NT----RIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~----~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. .+ ++++.++++.+|+.+.. |+ ....||||
T Consensus 412 ~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~------~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGG 480 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLAD-TFLANVTLGRD------IS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVG 480 (592)
T ss_pred HHHhheEEEccCCccccc-hHHHHHHhCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 24679999999999998 99999988631 12 23456666666655433 33 33679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.+|++++||||||+||+.+...+.+.|+++++ ++|+|++||++ .....||+|++|++|+++.
T Consensus 481 qrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~----~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE----HTTLVVIAHRL--STIVEADTILVLHRGQAVE 554 (592)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEecch--HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999863 34999999997 3566799999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 555 ~G~~~~L~ 562 (592)
T PRK10790 555 QGTHQQLL 562 (592)
T ss_pred EcCHHHHH
Confidence 99998774
No 269
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.5e-41 Score=373.13 Aligned_cols=206 Identities=29% Similarity=0.417 Sum_probs=173.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||+++| .. .++.+|+|+||+|++||.+||+||||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 451 ~I~~~nvsf~Y-~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 451 AIEVDRVTFRY-RP---DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQ 523 (686)
T ss_pred eEEEEEEEEEc-CC---CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHH
Confidence 68999999993 21 2457999999999999999999999999999999999999874 9999999998642
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-------Cc----cCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-------NT----RIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~----~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. .+ ++++.++++..|+.+.. |+ ...+||||
T Consensus 524 ~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGG 592 (686)
T TIGR03797 524 AVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592 (686)
T ss_pred HHHhccEEEccCCccCcc-cHHHHHhcCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 24679999999999987 99999987532 12 23355666666665433 33 33679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|++++||||||+||+.+...+.+.|+++ ++ |+|++||+++ ..+.||+|++|++|+++.
T Consensus 593 QrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~--T~IiItHr~~--~i~~~D~Iivl~~G~iv~ 664 (686)
T TIGR03797 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KV--TRIVIAHRLS--TIRNADRIYVLDAGRVVQ 664 (686)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CC--eEEEEecChH--HHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999875 34 9999999973 557799999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 665 ~G~~~~Ll 672 (686)
T TIGR03797 665 QGTYDELM 672 (686)
T ss_pred ECCHHHHH
Confidence 99988764
No 270
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=359.18 Aligned_cols=214 Identities=20% Similarity=0.324 Sum_probs=180.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+.+|. +|+|+++|++...
T Consensus 256 ~~l~~~~~~~~----------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 256 VRLRLDGLKGP----------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSP 322 (501)
T ss_pred cEEEEeccccC----------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCH
Confidence 35788888632 4899999999999999999999999999999999999774 8999999986531
Q ss_pred ---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccC-CCC--CCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHH
Q 044030 113 ---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQL-PDT--MPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGer 182 (449)
.++.++|++|++ .+++.+|+.||+.++..... ... ......++.+.++++.+++. +..++++..||||||
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHH
Confidence 124699999996 48889999999987532110 001 11223345688999999994 788999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ .++.++||++++|++|++++.|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~--tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GV--AVLFVSSDL-PEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CC--EEEEECCCH-HHHHhhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999999999854 55 999999996 5799999999999999999999
Q ss_pred Chhh
Q 044030 263 PATA 266 (449)
Q Consensus 263 ~~~~ 266 (449)
++++
T Consensus 479 ~~~~ 482 (501)
T PRK11288 479 AREQ 482 (501)
T ss_pred cccc
Confidence 7754
No 271
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.7e-41 Score=359.25 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=178.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++|++.. +|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.++..
T Consensus 267 ~~l~~~~l~~~-----------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 267 PVLTVEDLTGE-----------GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALST 332 (510)
T ss_pred ceEEEeCCCCC-----------CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCH
Confidence 35888888731 599999999999999999999999999999999998774 8999999986532
Q ss_pred ---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHH
Q 044030 113 ---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv 185 (449)
.++.++|++|++ .+++.+|+.||+.................++.++++++.+|+. +..+++++.|||||||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence 124699999984 4788899999986431110000011222345688999999997 788999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++|||+ .++.++||++++|++|++++.|.++
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~--tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NV--AVLFISSDL-EEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999999854 55 999999997 5799999999999999999988775
Q ss_pred h
Q 044030 266 A 266 (449)
Q Consensus 266 ~ 266 (449)
+
T Consensus 489 ~ 489 (510)
T PRK15439 489 A 489 (510)
T ss_pred c
Confidence 4
No 272
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.7e-41 Score=310.20 Aligned_cols=170 Identities=28% Similarity=0.448 Sum_probs=151.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| +|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (182)
T cd03215 4 VLEVRGLSVKG----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPR 70 (182)
T ss_pred EEEEeccEEEe----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHH
Confidence 58999999871 899999999999999999999999999999999999774 8999999987532
Q ss_pred --ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 113 --AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 --~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
..+.++|++|++ .+++.+|++||+.+... ||||||||++|
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----------------------------------LS~G~~qrl~l 115 (182)
T cd03215 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----------------------------------LSGGNQQKVVL 115 (182)
T ss_pred HHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----------------------------------cCHHHHHHHHH
Confidence 134699999995 57888999999976421 99999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|+||+.+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++ +++.++||++++|++|++
T Consensus 116 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 116 ARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GK--AVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999743 45 999999996 578899999999999974
No 273
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.3e-41 Score=327.54 Aligned_cols=212 Identities=20% Similarity=0.282 Sum_probs=171.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| .. ..+.+|+|+||++++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 19 ~i~~~~l~~~~-~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 19 EIKIHDLCVRY-EN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIVIDGIDISKLPLH 91 (257)
T ss_pred eEEEEEEEEEe-CC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEEECCEEhhhCCHH
Confidence 58999999983 21 125699999999999999999999999999999999999876 48999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK-----ERAEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
..+.++|++|++.+++. |++||+..... ....... ..+.++++.+ |++...+..+..||||||||
T Consensus 92 ~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qr 164 (257)
T cd03288 92 TLRSRLSIILQDPILFSG-SIRFNLDPECK------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQL 164 (257)
T ss_pred HHhhhEEEECCCCccccc-HHHHhcCcCCC------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHH
Confidence 13569999999988875 99999853210 1111111 1233445555 66666677788999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++||+||+.+|+++||||||+|||+.++..+.+.|+++. + +. |||++||++. .+. .||++++|++|+++..|++
T Consensus 165 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~--tiii~sh~~~-~~~-~~dri~~l~~G~i~~~g~~ 238 (257)
T cd03288 165 FCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DR--TVVTIAHRVS-TIL-DADLVLVLSRGILVECDTP 238 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CC--EEEEEecChH-HHH-hCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999875 3 44 9999999974 555 4999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 239 ~~~~ 242 (257)
T cd03288 239 ENLL 242 (257)
T ss_pred HHHH
Confidence 7664
No 274
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.8e-41 Score=314.54 Aligned_cols=197 Identities=24% Similarity=0.363 Sum_probs=163.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| .. ..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 6 ~l~~~~l~~~~-~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 78 (207)
T cd03369 6 EIEVENLSVRY-AP---DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLE 78 (207)
T ss_pred eEEEEEEEEEe-CC---CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHH
Confidence 48899999983 21 1246999999999999999999999999999999999998774 8999999987521
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++|++.+++. |++||+.+.. .... +.+.+.++ .++++..|||||+||++|||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral 140 (207)
T cd03369 79 DLRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARAL 140 (207)
T ss_pred HHHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHH
Confidence 13569999999988874 9999996531 1111 12333333 4678899999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+.+|+++||||||+|||+.++..+++.|++++ + |. |+|++||++. ++.. ||++++|++|+++..|++
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NS--TILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CC--EEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999985 3 44 9999999974 5654 999999999999988763
No 275
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.3e-41 Score=311.25 Aligned_cols=175 Identities=33% Similarity=0.557 Sum_probs=151.9
Q ss_pred EEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-----
Q 044030 39 TWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA----- 113 (449)
Q Consensus 39 ~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~----- 113 (449)
+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+....
T Consensus 1 ~~~~l~~~~------~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 71 (180)
T cd03214 1 EVENLSVGY------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKEL 71 (180)
T ss_pred CeeEEEEEE------CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHH
Confidence 468899873 2356999999999999999999999999999999999998774 89999999865310
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++| +++.+|+.+..++.+..||||||||++|||||+.
T Consensus 72 ~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~ 114 (180)
T cd03214 72 ARKIAYVPQ-------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQ 114 (180)
T ss_pred HHHHhHHHH-------------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 123555555 6777888888889999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+|+++||||||+|||+.++..+.+.|++++++.+. |||++||++ .++.++||++++|++|++++.|
T Consensus 115 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~--tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARERGK--TVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999754455 999999996 4778999999999999998654
No 276
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.6e-41 Score=309.09 Aligned_cols=174 Identities=27% Similarity=0.455 Sum_probs=151.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|+++.| . + ..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... .
T Consensus 1 i~~~~~~~~~-~-~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSY-P-E--QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEe-C-C--CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHH
Confidence 4689999983 2 1 1236999999999999999999999999999999999998774 8999999986531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++ .|++||+ +..||||||||++||+||+.
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~~i-------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 74 SSLISVLNQRPYLFD-TTLRNNL-------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred HhhEEEEccCCeeec-ccHHHhh-------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 356999999988876 6998886 67899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+|++++|||||+|||+.++..+++.|++++ + +. |||++||++. ++ ..||++++|++|++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DK--TLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CC--EEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999985 3 44 9999999974 55 479999999999998764
No 277
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=9.2e-41 Score=335.71 Aligned_cols=186 Identities=28% Similarity=0.496 Sum_probs=165.7
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH
Q 044030 74 IMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK 150 (449)
Q Consensus 74 IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 150 (449)
|+|||||||||||++|+|+.+|+ +|+|.++|++... ..+.++|++|++.+++.+||.||+.|+...+ ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999774 8999999987532 2357999999999999999999999986542 2334
Q ss_pred HHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCe
Q 044030 151 SDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230 (449)
Q Consensus 151 ~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ 230 (449)
.+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++.|.
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~-- 152 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI-- 152 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC--
Confidence 445567899999999999999999999999999999999999999999999999999999999999999999866565
Q ss_pred EEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 231 TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 231 tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 153 tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 153 TFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999996 5789999999999999999999998764
No 278
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.8e-41 Score=372.51 Aligned_cols=209 Identities=26% Similarity=0.394 Sum_probs=172.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||+++| .. ..+.+|+|+|++|++||.+||+||||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 476 ~~I~~~~vsf~y-~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 548 (710)
T TIGR03796 476 GYVELRNITFGY-SP---LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPR 548 (710)
T ss_pred CeEEEEEEEEec-CC---CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCH
Confidence 368999999983 21 2457999999999999999999999999999999999999874 8999999998632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSg 179 (449)
.++.++||+|++.+|+. |++||+.++.. ..+. +++.+.++..++.+ .......+|||
T Consensus 549 ~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 549 EVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred HHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 24679999999999976 99999976421 1222 23444455444433 33334467999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+++|++++||||||+||+.+...+.+.|++ .++ |+|++||+++ ....||+|++|++|+++
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~--T~IiitHrl~--~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGC--TCIIVAHRLS--TIRDCDEIIVLERGKVV 690 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCC--EEEEEecCHH--HHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999975 234 9999999973 45679999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
..|+.+++.+
T Consensus 691 ~~G~~~~Ll~ 700 (710)
T TIGR03796 691 QRGTHEELWA 700 (710)
T ss_pred EecCHHHHHH
Confidence 9999988753
No 279
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-41 Score=344.04 Aligned_cols=210 Identities=28% Similarity=0.425 Sum_probs=176.3
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
+-.|+|+||+++|. .+++||+++||+|++||-+||+|+|||||||++|+|.++.. .+|+|++||.++..
T Consensus 349 ~~~I~F~dV~f~y~-----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d----~sG~I~IdG~dik~~~ 419 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG-----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD----YSGSILIDGQDIKEVS 419 (591)
T ss_pred CCcEEEEeeEEEeC-----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc----cCCcEEECCeeHhhhC
Confidence 34599999999831 34559999999999999999999999999999999999985 48999999998642
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hCccCCCCC
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-----------MNTRIRRLS 178 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LS 178 (449)
.++.|||||||..||.+ ||.+|+.++.. ..+. +++.+..+..|+.+. ...+...||
T Consensus 420 ~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LS 489 (591)
T KOG0057|consen 420 LESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLS 489 (591)
T ss_pred hHHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccc
Confidence 24679999999999987 99999998742 1222 334555566655443 334446799
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||||+||||++++|+|+++|||||.||..+..++++.+.... . |+|+|++.|+. ....-||+|++|++|++
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~--~rTvI~IvH~l--~ll~~~DkI~~l~nG~v 563 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--S--GRTVIMIVHRL--DLLKDFDKIIVLDNGTV 563 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--C--CCeEEEEEecc--hhHhcCCEEEEEECCee
Confidence 999999999999999999999999999999999999999999954 3 45999999996 47788999999999999
Q ss_pred EEecChhhHHH
Q 044030 259 VYFGPATAANE 269 (449)
Q Consensus 259 v~~g~~~~~~~ 269 (449)
...|+-+++..
T Consensus 564 ~e~gth~ell~ 574 (591)
T KOG0057|consen 564 KEYGTHSELLA 574 (591)
T ss_pred EEeccHHHHhh
Confidence 99999988764
No 280
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-41 Score=356.65 Aligned_cols=214 Identities=28% Similarity=0.485 Sum_probs=179.0
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
.-.|+|+||+|.| +. +.+.+||+|+||+|+|||++||+||||+||||+.++|-.++.| .+|+|.+||.|+..
T Consensus 463 ~G~IeF~~VsFaY-P~--Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P---tsG~IllDG~~i~~~~ 536 (716)
T KOG0058|consen 463 QGVIEFEDVSFAY-PT--RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP---TSGRILLDGVPISDIN 536 (716)
T ss_pred cceEEEEEeeeec-CC--CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC---CCCeEEECCeehhhcC
Confidence 3468999999994 32 2467899999999999999999999999999999999999987 49999999998642
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCchhhCccC----CCCChH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREMGLQDAMNTRI----RRLSGG 180 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~~----~~LSgG 180 (449)
-+++||+|.|+|.+|.. ||+|||.|+.. ..+.++... .+.+.+. ++.+-.|+.+ ..||||
T Consensus 537 ~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 537 HKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred HHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCccccccch
Confidence 13689999999999998 99999999865 223333222 2223333 4445555555 589999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.||.||||||.||+||..+...+-+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++
T Consensus 609 QKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~----~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E 682 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ----GRTVLVIAHRLS--TVRHADQIVVIDKGRVVE 682 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc----CCeEEEEehhhh--HhhhccEEEEEcCCeEEe
Confidence 99999999999999999999999999999999999999999874 349999999974 567899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+-+++.
T Consensus 683 ~G~h~eLl 690 (716)
T KOG0058|consen 683 MGTHDELL 690 (716)
T ss_pred cccHHHHh
Confidence 99887775
No 281
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.7e-41 Score=360.44 Aligned_cols=210 Identities=28% Similarity=0.479 Sum_probs=178.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||++.| .. +.+.+|+|+||++++||.+||+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 337 ~~i~~~~v~f~y-~~---~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~ 409 (574)
T PRK11160 337 VSLTLNNVSFTY-PD---QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSE 409 (574)
T ss_pred CeEEEEEEEEEC-CC---CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCH
Confidence 469999999983 21 2356999999999999999999999999999999999999874 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc----------cCCCCChH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT----------RIRRLSGG 180 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----------~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. .. .++.+.+.++..++.+..++ ....||||
T Consensus 410 ~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 410 AALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred HHHHhheeEEcccchhhcc-cHHHHhhcCCC-----cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHH
Confidence 23579999999999986 99999987531 11 23456778888888766543 34679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|++++||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ . ...||++++|++|+++.
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~----~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ----NKTVLMITHRLT-G-LEQFDRICVMDNGQIIE 553 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC----CCEEEEEecChh-H-HHhCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999863 449999999974 4 45699999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 554 ~g~~~~l~ 561 (574)
T PRK11160 554 QGTHQELL 561 (574)
T ss_pred eCCHHHHH
Confidence 99987764
No 282
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.1e-41 Score=359.24 Aligned_cols=215 Identities=26% Similarity=0.399 Sum_probs=178.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|+++.| . .+++.+|+|+|+++++||.++|+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 315 ~~i~~~~v~~~y-~---~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 315 GHLSVENVTIVP-P---GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDR 387 (544)
T ss_pred CeEEEEEEEEEc-C---CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCH
Confidence 359999999983 2 12357999999999999999999999999999999999999774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK-----ERAEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.++||+|++.+++. |++||+.+... ..+.++.. ...+++++.+ |++...+.....|||||||
T Consensus 388 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q 461 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ 461 (544)
T ss_pred HHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence 23579999999999987 99999975321 12222221 1234556666 6666667778899999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||+++|++++|||||+|||+.++..+.+.|+++.. .+ +|+|++||+++ ..+.||++++|++|++++.|+
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~--~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~ 536 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RG--ITVVVITHRPS--LLGCVDKILVLQDGRIARFGE 536 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CC--CEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCC
Confidence 99999999999999999999999999999999999999863 34 49999999973 457899999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
.+++.
T Consensus 537 ~~~l~ 541 (544)
T TIGR01842 537 RDEVL 541 (544)
T ss_pred HHHHh
Confidence 87664
No 283
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=320.51 Aligned_cols=209 Identities=26% Similarity=0.398 Sum_probs=187.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc----cCcEEEEc-CCCCCCCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA----YGTSAYVT-QDDTLITT 129 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~----~~~i~yv~-Q~~~l~~~ 129 (449)
...+++|+||+|++|++++++|||||||||+||+|+|++.|. +|.|.++|..+... -+++++|+ |...++..
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 456999999999999999999999999999999999999874 99999999864321 14566664 55678888
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 130 LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
+.+.|.+......+ ..+.+..+++.+.+.+.|+|+...+.+++.||-|||+|+.||.+|+++|++|||||||-|||.
T Consensus 113 lp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 113 LPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred chhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 88999988776665 567888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHH
Q 044030 210 AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFA 272 (449)
Q Consensus 210 ~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~ 272 (449)
.++..|.+.|++..++.+. ||+++||+. +.+..+||||++|+.|+++|.|+.+++.+-|.
T Consensus 190 ~aq~~ir~Flke~n~~~~a--TVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 190 NAQANIREFLKEYNEERQA--TVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred hHHHHHHHHHHHHHHhhCc--eEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 9999999999999988866 999999996 58999999999999999999999998876553
No 284
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=346.96 Aligned_cols=209 Identities=27% Similarity=0.431 Sum_probs=177.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
.++++||+|+| .. ...++|+|+||++++||.+||+|+||||||||++.|+|.++|+ +|+|.+||.++...
T Consensus 336 ~l~~~~vsF~y-~~---~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~ 408 (573)
T COG4987 336 ALELRNVSFTY-PG---QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408 (573)
T ss_pred eeeeccceeec-CC---CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChh
Confidence 78999999994 21 3347999999999999999999999999999999999999874 99999999875321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc-----------cCCCCChH
Q 044030 114 --YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT-----------RIRRLSGG 180 (449)
Q Consensus 114 --~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~~~~LSgG 180 (449)
++.+++++|...+|.. |+++|+.++.. +.+ ++.+.++++.+||++.... -.+.||||
T Consensus 409 ~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~-----~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 409 ALRETISVLTQRVHLFSG-TLRDNLRLANP-----DAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred hHHHHHhhhccchHHHHH-HHHHHHhhcCC-----CCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence 2468999999999988 99999987642 122 2345666777777654433 34789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||+|++|.++++|||||.|||+.+..++++.|.+-++ |+|+|++||+.. -.+.||+|++|++|+++.
T Consensus 479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~----~kTll~vTHrL~--~le~~drIivl~~Gkiie 552 (573)
T COG4987 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE----GKTLLMVTHRLR--GLERMDRIIVLDNGKIIE 552 (573)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc----CCeEEEEecccc--cHhhcCEEEEEECCeeee
Confidence 99999999999999999999999999999999999999999874 559999999975 367899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|...++.
T Consensus 553 ~G~~~~Ll 560 (573)
T COG4987 553 EGTHAELL 560 (573)
T ss_pred cCCHHhhh
Confidence 99988775
No 285
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-40 Score=326.24 Aligned_cols=230 Identities=28% Similarity=0.421 Sum_probs=202.0
Q ss_pred CCCCCeeEEEEeeEEEEeecC-----cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 044030 31 NEDDGVFLTWKDLTVTIVSNG-----KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI 105 (449)
Q Consensus 31 ~~~~~~~l~~~nls~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~ 105 (449)
+...++.++.+|+.+.|...+ .-....++++||+++++||.+||+|.||||||||=.+|.+++++ +|+|.|
T Consensus 270 ~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F 345 (534)
T COG4172 270 PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRF 345 (534)
T ss_pred CCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEE
Confidence 345678899999999842211 11235799999999999999999999999999999999999876 599999
Q ss_pred CCEeccc--------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccC
Q 044030 106 NGHKKAL--------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRI 174 (449)
Q Consensus 106 ~g~~~~~--------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~ 174 (449)
+|+++.. .++++-.||||+ .+-|.|||.+-+.-+...+.+ ..+.++..+++.+.|+.+||+ ...++++
T Consensus 346 ~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYP 424 (534)
T COG4172 346 DGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYP 424 (534)
T ss_pred CCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCC
Confidence 9987641 134688999997 588999999999998877644 467888999999999999997 5789999
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
+++|||||||++||||++.+|++++||||||+||-..+.+|+++|+.+.++.|. +-+++|||. .-+..+||+|+||+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~L--sYLFISHDL-~VvrAl~~~viVm~ 501 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL--SYLFISHDL-AVVRALCHRVIVMR 501 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCC--eEEEEeccH-HHHHHhhceEEEEe
Confidence 999999999999999999999999999999999999999999999999988876 999999996 57899999999999
Q ss_pred CCeEEEecChhhHH
Q 044030 255 AGQTVYFGPATAAN 268 (449)
Q Consensus 255 ~G~iv~~g~~~~~~ 268 (449)
+|+||++|+.+++.
T Consensus 502 ~GkiVE~G~~~~if 515 (534)
T COG4172 502 DGKIVEQGPTEAVF 515 (534)
T ss_pred CCEEeeeCCHHHHh
Confidence 99999999998763
No 286
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.2e-40 Score=305.47 Aligned_cols=168 Identities=30% Similarity=0.528 Sum_probs=147.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| .. +.+.+++|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~-~~---~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRY-PG---AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEc-CC---CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHH
Confidence 4689999983 21 2246999999999999999999999999999999999998774 8999999987531
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
..+.++|++|++.+++. ||+||+ ||||||||++||+||+
T Consensus 74 ~~~~i~~~~q~~~~~~~-tv~~~l----------------------------------------LS~G~~qrv~la~al~ 112 (173)
T cd03246 74 LGDHVGYLPQDDELFSG-SIAENI----------------------------------------LSGGQRQRLGLARALY 112 (173)
T ss_pred HHhheEEECCCCccccC-cHHHHC----------------------------------------cCHHHHHHHHHHHHHh
Confidence 13569999999988875 999886 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ ..+ ..||++++|++|++
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGA--TRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 99999999999999999999999999999974 455 999999997 455 68999999999974
No 287
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.8e-41 Score=361.77 Aligned_cols=214 Identities=29% Similarity=0.435 Sum_probs=176.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|+++.| . +++++|+|+||++++||.+||+||||||||||++.|+|+++| .+|+|.+||.++..
T Consensus 327 ~~I~f~~vsf~y-~----~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~idg~dI~~i~~ 398 (567)
T COG1132 327 GSIEFENVSFSY-P----GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEILIDGIDIRDISL 398 (567)
T ss_pred CeEEEEEEEEEc-C----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCEehhhcCH
Confidence 359999999983 2 357899999999999999999999999999999999999987 48999999988642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.++||+|++.+|.. |++||+.++..- .++++..+. +.+.++.+ |++.........|||||||
T Consensus 399 ~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~-----at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQ 472 (567)
T COG1132 399 DSLRKRIGIVSQDPLLFSG-TIRENIALGRPD-----ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472 (567)
T ss_pred HHHHHhccEEcccceeecc-cHHHHHhcCCCC-----CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHH
Confidence 24679999999999995 999999987431 233332222 23344444 4444444444689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||||++.+|++++||||||+||+.+...+.+.++++. + ++|+|+++|.++ .+.. ||+|++|++|++++.|+
T Consensus 473 rlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~---~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-K---GRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGT 546 (567)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-c---CCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999886 3 449999999974 4555 99999999999999999
Q ss_pred hhhHHH
Q 044030 264 ATAANE 269 (449)
Q Consensus 264 ~~~~~~ 269 (449)
.+++..
T Consensus 547 h~eLl~ 552 (567)
T COG1132 547 HEELLA 552 (567)
T ss_pred HHHHHH
Confidence 988764
No 288
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.2e-41 Score=368.80 Aligned_cols=210 Identities=27% Similarity=0.455 Sum_probs=174.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||+++| . .+.+++|+|+|++|++||.+||+||||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 463 ~I~~~~vsf~Y-~---~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 463 EIEFRNVSFAY-P---GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPA 535 (694)
T ss_pred eEEEEEEEEEe-C---CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHH
Confidence 58999999994 2 12457999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. ..+. +++.+.++..++.+ ........||||
T Consensus 536 ~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 536 DLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred HHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 23579999999999987 99999987521 1222 23444455554433 333344689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.+|++++||||||+||+.+...+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++
T Consensus 606 QrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~----~~T~iiItHrl~--~~~~~D~iivl~~G~i~e 679 (694)
T TIGR03375 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA----GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVA 679 (694)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHH--HHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999999999863 349999999973 567899999999999999
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.|+.+++.+
T Consensus 680 ~G~~~eLl~ 688 (694)
T TIGR03375 680 DGPKDQVLE 688 (694)
T ss_pred eCCHHHHHH
Confidence 999888754
No 289
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-40 Score=364.78 Aligned_cols=215 Identities=28% Similarity=0.448 Sum_probs=175.4
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...++++||+|+| +. +.+..||+|+||.|++|+.+||+|||||||||++++|.+++.|. +|+|++||.++..
T Consensus 348 ~g~ief~nV~FsY-Ps--Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~ 421 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSY-PS--RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLN 421 (1228)
T ss_pred ccceEEEEEEecC-CC--CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcc
Confidence 4579999999994 32 23568999999999999999999999999999999999999884 9999999987642
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHcCCchhhCccC----CCCChH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREMGLQDAMNTRI----RRLSGG 180 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~~----~~LSgG 180 (449)
.+..||.|.|+|.+|.. |++||+.|+.. +.+.++..+. +.+.+. .|.+-.++.+ -.||||
T Consensus 422 ~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~-----dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g~qLSGG 493 (1228)
T KOG0055|consen 422 LKWLRSQIGLVSQEPVLFAT-TIRENIRYGKP-----DATREEIEEAAKAANAHDFIL--KLPDGYDTLVGERGVQLSGG 493 (1228)
T ss_pred hHHHHhhcCeeeechhhhcc-cHHHHHhcCCC-----cccHHHHHHHHHHccHHHHHH--hhHHhhcccccCCCCCCChH
Confidence 24579999999988875 99999988642 1222222211 122222 2333444444 469999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.+|+|||||||||+||+.+...+.+.|.++.+ |+|.|+++|+++ .+.+ +|++++|++|++++
T Consensus 494 QKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~----grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 494 QKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK----GRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVE 567 (1228)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc----CCeEEEEeeehh-hhhc-cCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999874 559999999974 5655 99999999999999
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.|+.+++..
T Consensus 568 ~G~h~ELi~ 576 (1228)
T KOG0055|consen 568 QGTHDELIA 576 (1228)
T ss_pred ecCHHHHHh
Confidence 999998864
No 290
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=336.28 Aligned_cols=214 Identities=25% Similarity=0.360 Sum_probs=192.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
.++++++++.| ++..+++||||+|++||+.||+|.||||||||+++|.|.+.|+ +|+|.++|++....
T Consensus 4 ~l~~~~itK~f------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 4 ALEMRGITKRF------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPR 74 (501)
T ss_pred eEEEeccEEEc------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHH
Confidence 58999999983 5678999999999999999999999999999999999999885 99999999975421
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
+..||+|+|++.|++++||.||+.++.........+.+..+++++++.+.+||.-..|.++.+||-||||||.|.++
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH
Confidence 34699999999999999999999998754222234567788899999999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|..+|++|||||||+-|-|....++++.|++++++ |+|||++||-. .|+.++||++.+|.+|+++...+
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~---G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAE---GKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999954 45999999996 68999999999999999887655
No 291
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.4e-40 Score=359.65 Aligned_cols=208 Identities=26% Similarity=0.417 Sum_probs=171.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| . +++.+|+|+|+++++||.++|+|+||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 334 ~I~~~~vsf~y-~----~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 334 AVEFDDVSFSY-D----NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRA 405 (588)
T ss_pred eEEEEEEEEEe-C----CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHH
Confidence 58999999983 2 2356999999999999999999999999999999999999874 8999999987542
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-----------chhhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL-----------QDAMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. ..+.+ ++.+.++..++ +.........||||
T Consensus 406 ~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-----DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred HHHhheEEEecCcccccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 13679999999999986 99999987521 12222 23334444443 33333334679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|++++||||||+||+.++..+.+.|+++.+ ++|+|++||++ ...+.||++++|++|+++.
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~----~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK----GRTTFIIAHRL--STVRNADRILVFDNGRVVE 549 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc----CCEEEEEEecH--HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999998853 34999999997 3567899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 550 ~g~~~~l~ 557 (588)
T PRK13657 550 SGSFDELV 557 (588)
T ss_pred eCCHHHHH
Confidence 99987764
No 292
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=9.8e-41 Score=367.98 Aligned_cols=209 Identities=26% Similarity=0.365 Sum_probs=172.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| . +++.+|+|+|++|++|+.+||+||||||||||+++|+|+++|. +|+|++||.+...
T Consensus 473 ~I~~~~vsf~y-~----~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 473 DIVINDVSYSY-G----YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRH 544 (708)
T ss_pred cEEEEEEEEEc-C----CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHH
Confidence 58999999983 2 2457999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++... ..+. +++.+.++..++.+ .......+||||
T Consensus 545 ~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~----~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSG-SILENLLLGAKE----NVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred HHHHheEEEecCceehhH-HHHHHHhccCCC----CCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 23579999999999987 999999876311 1222 23444444444432 233334679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++||||++++|++++||||||+||+.+...+.+.|+++ + ++ |+|++||+++ ....||+|++|++|+++.
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~-~~--T~IiitHr~~--~~~~~D~i~~l~~G~i~~ 688 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--Q-DK--TIIFVAHRLS--VAKQSDKIIVLDHGKIIE 688 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--c-CC--EEEEEecchH--HHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999875 2 34 9999999973 567899999999999999
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.|+.+++.+
T Consensus 689 ~G~~~~L~~ 697 (708)
T TIGR01193 689 QGSHDELLD 697 (708)
T ss_pred ECCHHHHHh
Confidence 999887653
No 293
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.7e-40 Score=310.88 Aligned_cols=195 Identities=27% Similarity=0.407 Sum_probs=153.8
Q ss_pred EEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 38 LTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
++++||++.| . ++.+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|. +|+|.++| .
T Consensus 1 l~~~~l~~~~-~-~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~ 67 (204)
T cd03250 1 ISVEDASFTW-D-SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------S 67 (204)
T ss_pred CEEeEEEEec-C-CCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------E
Confidence 4689999983 2 1000 136999999999999999999999999999999999998774 89999998 4
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHHHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
++|++|++.+++ .|++||+.+.... ......+. +.+.++.+ |++...+..+..||||||||++||+
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lar 140 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPF------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLAR 140 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCc------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHH
Confidence 899999998885 6999999875321 11111111 11222222 3444556778999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMS-RIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
||+.+|++++|||||+|||+.++..+.+ +++.++++ |. |||++||++ ..+.. ||++++|++|+
T Consensus 141 al~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~--tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NK--TRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CC--EEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999998 46666543 44 999999997 45665 99999999985
No 294
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3e-40 Score=313.02 Aligned_cols=195 Identities=20% Similarity=0.234 Sum_probs=163.6
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL-INGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~-~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
++|+||||+|++||+++|+||||||||||+++|+|+.+|+ +|+|. ++|... .+.+++.+++.+|+.||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999998774 89997 777532 13345678899999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 044030 136 VYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i 215 (449)
+.+....+ ..+..+. ...+.+.++++...++++++||||||||++||+||+.+|+++||||||+++|+.++..+
T Consensus 70 l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 70 ARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred HHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 99876543 1222222 23344567888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHH
Q 044030 216 MSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAF 273 (449)
Q Consensus 216 ~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~ 273 (449)
.+.|.+..+ +. |+|++||++ ..+..+||++++|++|++++.|+.++...+++.
T Consensus 144 ~~~l~~~~~--~~--~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 144 QAALACQLQ--QK--GLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHhh--CC--cEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 998866543 23 899999997 478889999999999999999999888776554
No 295
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-40 Score=349.57 Aligned_cols=209 Identities=22% Similarity=0.379 Sum_probs=175.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|. ..+
T Consensus 2 l~i~~ls~~~------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~i 66 (530)
T PRK15064 2 LSTANITMQF------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ERL 66 (530)
T ss_pred EEEEEEEEEe------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEE
Confidence 7899999983 3467999999999999999999999999999999999999774 899999873 358
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHh-c-----------cCCC-C----------------CCHHHHHHHHHHHHHHcCCch
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQ-L-----------QLPD-T----------------MPKSDKKERAEVTIREMGLQD 168 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~-~-----------~~~~-~----------------~~~~~~~~~v~~~l~~lgL~~ 168 (449)
+|++|++.+++.+||.|++.++.. . ..+. . ....+.+.++.++++.+|+.+
T Consensus 67 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 146 (530)
T PRK15064 67 GKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPE 146 (530)
T ss_pred EEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCh
Confidence 999999999999999999987531 0 0000 0 000122356788999999986
Q ss_pred hh-CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhc
Q 044030 169 AM-NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLF 247 (449)
Q Consensus 169 ~~-~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~ 247 (449)
.. ++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++ .|. |||++||++ ..+.++|
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~--tiiivsHd~-~~~~~~~ 219 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNS--TMIIISHDR-HFLNSVC 219 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC--eEEEEeCCH-HHHHhhc
Confidence 44 678999999999999999999999999999999999999999999999863 344 999999996 5788999
Q ss_pred CeEEEeeCCeE-EEecChhhHH
Q 044030 248 HNLCLLSAGQT-VYFGPATAAN 268 (449)
Q Consensus 248 D~v~~l~~G~i-v~~g~~~~~~ 268 (449)
|++++|++|++ ++.|++++..
T Consensus 220 d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 220 THMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred ceEEEEeCCEEEEecCCHHHHH
Confidence 99999999999 5889887553
No 296
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.7e-40 Score=365.70 Aligned_cols=210 Identities=27% Similarity=0.449 Sum_probs=170.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.++++||++.| .. ..++.+|+|+||++++||.+||+||||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 477 ~~I~~~nVsf~Y-~~--~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~ 550 (711)
T TIGR00958 477 GLIEFQDVSFSY-PN--RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDH 550 (711)
T ss_pred CeEEEEEEEEEC-CC--CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCH
Confidence 358999999983 21 12357999999999999999999999999999999999999874 8999999998632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-----------MNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LSg 179 (449)
.++.++||+|++.+|+. |++||+.++.. ..+ ++++.++++..++.+. .+....+|||
T Consensus 551 ~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 551 HYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred HHHHhhceEEecCcccccc-CHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 23579999999999986 99999987632 122 2334555555555432 2333467999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++||||++++|++++||||||+||+.+...+.+ .. . .. ++|+|++||+++ ..+.||+|++|++|+++
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~--~~TvIiItHrl~--~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-S--RA--SRTVLLIAHRLS--TVERADQILVLKKGSVV 692 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c--cC--CCeEEEEeccHH--HHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999988 22 2 22 449999999973 46779999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
..|+.+++.+
T Consensus 693 e~Gt~~eL~~ 702 (711)
T TIGR00958 693 EMGTHKQLME 702 (711)
T ss_pred EeeCHHHHHh
Confidence 9999987753
No 297
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=301.04 Aligned_cols=230 Identities=27% Similarity=0.341 Sum_probs=197.3
Q ss_pred eeEEEEeeEEEEeecCcccc-cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGS-SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
++|+++||+++ + .+ +.||++||++|++||+.+||||||||||||.++|+|.-.. ..++|+|.++|+++..
T Consensus 2 ~~L~I~dLhv~-v-----~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 2 MMLEIKDLHVE-V-----EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELS 74 (251)
T ss_pred ceeEEeeeEEE-e-----cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCC
Confidence 46899999998 4 33 5899999999999999999999999999999999997544 3579999999998531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccC-CCCChHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRI-RRLSGGQKRRVS 186 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~-~~LSgGerqRv~ 186 (449)
.+..+...+|.|.-+|..|+.+.|..+............+....+++.++.+++++ .+++.+ -++|||||||..
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~E 154 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNE 154 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHH
Confidence 23568899999999999999999998876543211112355677889999999986 788888 589999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhc--CeEEEeeCCeEEEecCh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLF--HNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~--D~v~~l~~G~iv~~g~~ 264 (449)
|+..++.+|++.+||||-||||..+-+.|.+.+..++.+ |. +++++||.. .+..+. |+|.+|.+|+|+..|.+
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~--~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE-GR--GVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CC--eEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999999999854 44 999999984 678877 99999999999999999
Q ss_pred hhHHHHHHHCCCCC
Q 044030 265 TAANEFFAFNGFPC 278 (449)
Q Consensus 265 ~~~~~~f~~~g~~~ 278 (449)
++...++..|+.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 7777788777754
No 298
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.7e-40 Score=357.55 Aligned_cols=210 Identities=28% Similarity=0.431 Sum_probs=174.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||+++| .. .++.+|+|+|+++++||.++|+|+||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 330 ~i~~~~v~f~y-~~---~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 330 DVEFRNVTFRY-PG---RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLA 402 (571)
T ss_pred eEEEEEEEEEc-CC---CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHH
Confidence 59999999983 21 2357999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-------CccC----CCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-------NTRI----RRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~~----~~LSgG 180 (449)
.++.++|++|++.+|+. |++||+.++.. ...+ ++++.++++.+|+.+.. |+.+ ..||||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFND-TIANNIAYGRT----EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred HHHhhceEEccCcccccc-cHHHHHhcCCC----CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 23579999999999987 99999976531 0122 23455666666664432 3333 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++||||++.+|++++||||||+||+.++..+++.|+++++ ++|+|++||++ .....||+|++|++|+++.
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~----~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ----GRTTLVIAHRL--STIEKADRIVVMDDGRIVE 547 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC----CCEEEEEehhh--HHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999999999863 44999999997 4678899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 548 ~g~~~~l~ 555 (571)
T TIGR02203 548 RGTHNELL 555 (571)
T ss_pred eCCHHHHH
Confidence 99988764
No 299
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.3e-40 Score=351.57 Aligned_cols=209 Identities=23% Similarity=0.331 Sum_probs=176.7
Q ss_pred eeEEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 36 VFLTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
.+|+++||++.| + ++.+|+||||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+++.
T Consensus 5 ~~l~i~~l~~~y------~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~------ 69 (556)
T PRK11819 5 YIYTMNRVSKVV------PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG------ 69 (556)
T ss_pred EEEEEeeEEEEe------CCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------
Confidence 469999999983 3 467999999999999999999999999999999999999774 899999752
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhc-c------------CCCCCC--------------------HHHHHHHHHHHH
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQL-Q------------LPDTMP--------------------KSDKKERAEVTI 161 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~------------~~~~~~--------------------~~~~~~~v~~~l 161 (449)
..+|||+|++.+++.+||.||+.++... + ...... ..+...++.+++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3599999999999999999999875320 0 000000 001235678899
Q ss_pred HHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 162 REMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 162 ~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
+.+|+.. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++. . |||++||++ .
T Consensus 150 ~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~----~--tviiisHd~-~ 221 (556)
T PRK11819 150 DALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP----G--TVVAVTHDR-Y 221 (556)
T ss_pred HhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----C--eEEEEeCCH-H
Confidence 9999964 799999999999999999999999999999999999999999999999998762 2 999999996 5
Q ss_pred HHHhhcCeEEEeeCCeEE-EecChhhH
Q 044030 242 EVFQLFHNLCLLSAGQTV-YFGPATAA 267 (449)
Q Consensus 242 ~i~~~~D~v~~l~~G~iv-~~g~~~~~ 267 (449)
.+..+||++++|++|+++ +.|+.++.
T Consensus 222 ~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 788999999999999986 78887653
No 300
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2e-39 Score=353.37 Aligned_cols=219 Identities=26% Similarity=0.394 Sum_probs=189.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| .. ..+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 4 ~l~~~nl~~~y-~~-~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~ 78 (648)
T PRK10535 4 LLELKDIRRSY-PS-GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDAD 78 (648)
T ss_pred EEEEeeEEEEe-CC-CCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHH
Confidence 68999999983 21 112357999999999999999999999999999999999999774 8999999987532
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.++.++|++|++.+++.+|+.||+.+..... .....+.++++.++++.+||.+..++++..|||||+||++|
T Consensus 79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~L 155 (648)
T PRK10535 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSI 155 (648)
T ss_pred HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHH
Confidence 1346999999999999999999998865432 22344556678899999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||||+.+|++++|||||+|||+.++..+.+.|+++++ .|. |+|++||++. .+ ..||++++|++|++++.|++++.
T Consensus 156 AraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~--tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGH--TVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCC--EEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 9999999999999999999999999999999999974 455 9999999963 44 57999999999999999998765
Q ss_pred H
Q 044030 268 N 268 (449)
Q Consensus 268 ~ 268 (449)
.
T Consensus 231 ~ 231 (648)
T PRK10535 231 V 231 (648)
T ss_pred c
Confidence 4
No 301
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.7e-40 Score=355.40 Aligned_cols=210 Identities=27% Similarity=0.422 Sum_probs=172.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| .. ..++.+|+|+||++++||.++|+||||||||||+|+|+|+++|. +|+|.+||.+.+.
T Consensus 337 ~i~~~~v~f~y-~~--~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~ 410 (576)
T TIGR02204 337 EIEFEQVNFAY-PA--RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPA 410 (576)
T ss_pred eEEEEEEEEEC-CC--CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHH
Confidence 58999999983 21 12257999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSgG 180 (449)
.++.++|+||++.+|+. |++||+.++.. ..+. +++.+.++..|+.+ ........||||
T Consensus 411 ~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 411 ELRARMALVPQDPVLFAA-SVMENIRYGRP-----DATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred HHHHhceEEccCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 13579999999999987 99999977521 1122 33445555555433 223334679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++||||++.+|++++||||||+||+.++..+++.|+++.+ ++|+|++||++ +....||++++|++|+++.
T Consensus 481 q~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~----~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~ 554 (576)
T TIGR02204 481 QRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK----GRTTLIIAHRL--ATVLKADRIVVMDQGRIVA 554 (576)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC----CCEEEEEecch--HHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999863 34999999997 3567899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 555 ~g~~~~l~ 562 (576)
T TIGR02204 555 QGTHAELI 562 (576)
T ss_pred eecHHHHH
Confidence 99987653
No 302
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.6e-40 Score=305.50 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=160.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-ccCc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-AYGT 116 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~~~~ 116 (449)
|+++|++++| +++.+++ +||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... ..+.
T Consensus 2 l~~~~l~~~~------~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNI------EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPY 71 (195)
T ss_pred eEEEEeeEEE------CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhh
Confidence 7899999983 2344555 99999999999999999999999999999998774 8999999987532 2245
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++|++|+..+++.+||.||+.+....+ . ..+++.++++.+++.+..+++++.||||||||++||+|++.+|+
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 899999988888899999998865332 1 13457788999999998999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
+++|||||+|||+.++..+.+.|++.+ +.|. |||++||++. .+ ..+|-+
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~--tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKA-NSGG--IVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHH-hCCC--EEEEEeCCcc-cc-chhhee
Confidence 999999999999999999999998765 3444 9999999974 33 446654
No 303
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.6e-40 Score=363.76 Aligned_cols=214 Identities=27% Similarity=0.444 Sum_probs=173.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||++.| . .+.+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 454 ~~i~~~~vsf~y-~---~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 454 GAITFENIRFRY-A---PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADP 526 (694)
T ss_pred CeEEEEEEEEEc-C---CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCH
Confidence 369999999983 2 13356999999999999999999999999999999999999874 8999999997532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.++||+|++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++...+....+|||||||
T Consensus 527 ~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred HHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 13579999999999986 99999977421 122222111 122333333 4444444555789999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||+++|++++||||||+||+.++..+.+.|+++. + ++|+|++||+++ . ...||++++|++|++++.|+
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~---~~t~i~itH~~~-~-~~~~d~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-R---GRTVIIIAHRLS-T-VRACDRIIVLEKGQIAESGR 674 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C---CCEEEEEeCChH-H-HHhCCEEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999999999985 2 449999999973 3 46699999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
.+++.
T Consensus 675 ~~~l~ 679 (694)
T TIGR01846 675 HEELL 679 (694)
T ss_pred HHHHH
Confidence 88764
No 304
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1e-39 Score=310.01 Aligned_cols=195 Identities=24% Similarity=0.338 Sum_probs=156.7
Q ss_pred EEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc------
Q 044030 39 TWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL------ 112 (449)
Q Consensus 39 ~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~------ 112 (449)
.+.|+++.| . +.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~~~~~~~~~-~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSW-G----SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEec-C----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCccccccccccc
Confidence 466777772 1 2357999999999999999999999999999999999998764 8999999976421
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hCccCCCCC
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-----------MNTRIRRLS 178 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LS 178 (449)
.++.++|++|++.++ ..|++||+.+.... .. ....++++.+++.+. .++++..||
T Consensus 74 ~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS 142 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLS 142 (218)
T ss_pred chhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCC
Confidence 124699999999887 56999999775311 11 123344555555432 356789999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS--RIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~--~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
|||||||+||+||+.+|+++||||||+|||+.++..+++ +++.++ +.|. |||++||++. .+ ..||++++|++|
T Consensus 143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~--tii~~sH~~~-~~-~~~d~i~~l~~G 217 (218)
T cd03290 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKR--TLVLVTHKLQ-YL-PHADWIIAMKDG 217 (218)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-cCCC--EEEEEeCChH-HH-hhCCEEEEecCC
Confidence 999999999999999999999999999999999999998 666665 4444 9999999974 55 579999999988
Q ss_pred e
Q 044030 257 Q 257 (449)
Q Consensus 257 ~ 257 (449)
.
T Consensus 218 ~ 218 (218)
T cd03290 218 S 218 (218)
T ss_pred C
Confidence 4
No 305
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.6e-39 Score=314.55 Aligned_cols=190 Identities=23% Similarity=0.302 Sum_probs=159.6
Q ss_pred ceeeeeeEEEe-----cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCC
Q 044030 57 SILEDLTGYAK-----PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 57 ~iL~~vs~~i~-----~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lT 131 (449)
..++|++++++ +||+++|+||||||||||+++|+|+++|. +|+|.++|. .++|++|+...++.+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCCC
Confidence 36666777665 79999999999999999999999999774 899999985 4899999988778889
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~ 211 (449)
|.|++.+...... . ....+.++++.+++.+..++++..|||||||||+||+||+.+|+++||||||++||+.+
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~ 150 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ 150 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 9999976533110 1 12245788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE--EecChhh
Q 044030 212 SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV--YFGPATA 266 (449)
Q Consensus 212 ~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv--~~g~~~~ 266 (449)
+..+.+.|++++++.|. |||++||++ ..+..+||++++|+++..+ ..+++..
T Consensus 151 ~~~l~~~l~~~~~~~~~--tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 151 RLMASKVIRRFAENNEK--TAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred HHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 99999999999865555 999999996 5788899999999764333 3344444
No 306
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.8e-40 Score=354.28 Aligned_cols=212 Identities=29% Similarity=0.386 Sum_probs=173.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| . +++.+|+|+||++++||.++|+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 334 ~i~~~~v~~~y-~----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~ 405 (585)
T TIGR01192 334 AVEFRHITFEF-A----NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRE 405 (585)
T ss_pred eEEEEEEEEEC-C----CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHH
Confidence 58999999983 2 2346999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
.++.++||+|++.+++. |++||+.++.. ..+.++..+. ..+.+..+ |++...++....||||||||
T Consensus 406 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr 479 (585)
T TIGR01192 406 SLRKSIATVFQDAGLFNR-SIRENIRLGRE-----GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479 (585)
T ss_pred HHHhheEEEccCCccCcc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 23579999999998875 99999987531 1222322221 12233333 55555666778999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++|||||+.+|++++||||||+||+.++..+.+.|+++. + + +|||++||+++ .+ ..||++++|++|+++..|+.
T Consensus 480 l~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~-~--~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-K-N--RTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-C--CEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999885 3 4 49999999973 44 67999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 554 ~~l~ 557 (585)
T TIGR01192 554 QELI 557 (585)
T ss_pred HHHH
Confidence 7664
No 307
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.8e-40 Score=346.98 Aligned_cols=215 Identities=21% Similarity=0.319 Sum_probs=173.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+.++ ..+|+|+++|++...
T Consensus 259 ~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~--~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 259 PRIVLNNGVVSY------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ--GYSNDLTLFGRRRGSGET 330 (490)
T ss_pred ceEEEeceEEEE------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc--ccCCeEEEecccCCCCCC
Confidence 469999999983 345699999999999999999999999999999999997643 148999999975321
Q ss_pred ---ccCcEEEEcCCCCCCC--CCCHHHHHHHHHhc--cCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLIT--TLTVKEAVYYSAQL--QLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~--~lTv~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqR 184 (449)
.++.++|++|++.+++ ..|+.+++.++... ...... ....+++++++++.+||.+ ..++++.+||||||||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 409 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAV-SDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL 409 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCC-CHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence 1246999999876543 35777776543211 000011 1223456889999999997 8899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh-hcCeEEEeeCCeEEEec
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ-LFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~-~~D~v~~l~~G~iv~~g 262 (449)
|+||+||+.+|++|||||||+|||+.++..+++.|++++++.+. |||++||++ +++.+ +||++++|++|++++.-
T Consensus 410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~--tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGET--QLLFVSHHA-EDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCc--EEEEEecch-hhhhhhhheeEEEecCCceEEee
Confidence 99999999999999999999999999999999999999865323 799999997 46766 59999999999988754
No 308
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-40 Score=299.39 Aligned_cols=166 Identities=35% Similarity=0.579 Sum_probs=144.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . + ....+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-~-~--~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSY-P-G--RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEc-C-C--CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHH
Confidence 4688999983 1 1 1136999999999999999999999999999999999998774 8999999987531
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
..+.++|++|++.+++ .|+.||+ |||||||||+||+||+
T Consensus 74 ~~~~i~~~~~~~~~~~-~t~~e~l----------------------------------------LS~G~~~rl~la~al~ 112 (171)
T cd03228 74 LRKNIAYVPQDPFLFS-GTIRENI----------------------------------------LSGGQRQRIAIARALL 112 (171)
T ss_pred HHhhEEEEcCCchhcc-chHHHHh----------------------------------------hCHHHHHHHHHHHHHh
Confidence 1246999999988776 5888886 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ .++.. ||++++|++|+
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~--tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEALRALA-K-GK--TVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CC--EEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999986 3 34 999999997 46666 99999999885
No 309
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.8e-40 Score=353.98 Aligned_cols=209 Identities=26% Similarity=0.356 Sum_probs=171.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| . .+++.+|+|+|+++++|+.++|+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 313 ~I~~~~v~~~y-~---~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~ 385 (569)
T PRK10789 313 ELDVNIRQFTY-P---QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLD 385 (569)
T ss_pred cEEEEEEEEEC-C---CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHH
Confidence 58999999983 2 12357999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-----------chhhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL-----------QDAMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~~~~~LSgG 180 (449)
.++.++|++|++.+|+. |++||+.++.. ..+.+ .+.+.++..++ +...+.....||||
T Consensus 386 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgG 455 (569)
T PRK10789 386 SWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGG 455 (569)
T ss_pred HHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHH
Confidence 13579999999999986 99999977531 12222 23334444443 33334445789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|++++|||||++||+.++..+.+.|+++. + |+|+|++||+++ ..+.||++++|++|+++.
T Consensus 456 q~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~---~~tii~itH~~~--~~~~~d~i~~l~~G~i~~ 529 (569)
T PRK10789 456 QKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-E---GRTVIISAHRLS--ALTEASEILVMQHGHIAQ 529 (569)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-C---CCEEEEEecchh--HHHcCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999985 3 449999999973 456799999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 530 ~g~~~~l~ 537 (569)
T PRK10789 530 RGNHDQLA 537 (569)
T ss_pred ecCHHHHH
Confidence 99987764
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-39 Score=346.54 Aligned_cols=203 Identities=25% Similarity=0.357 Sum_probs=175.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|. +
T Consensus 318 ~~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~ 382 (530)
T PRK15064 318 NALEVENLTKGF------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------A 382 (530)
T ss_pred ceEEEEeeEEee------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------e
Confidence 469999999983 3457999999999999999999999999999999999998774 899999874 3
Q ss_pred cEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHH
Q 044030 116 TSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 116 ~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.++|++|++. +++.+|+.|++.+... . ...++++.++++.+|+. +..++++.+|||||||||+||++|+
T Consensus 383 ~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 383 NIGYYAQDHAYDFENDLTLFDWMSQWRQ---E-----GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEEEEcccccccCCCCCcHHHHHHHhcc---C-----CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHh
Confidence 5999999864 5667999999864211 0 11235678899999994 7889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE-EecChhhHH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV-YFGPATAAN 268 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv-~~g~~~~~~ 268 (449)
.+|++|||||||+|||+.++..+.+.|+++ +. |||++|||+ ..+..+||++++|++|+++ +.|++++..
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~--tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY----EG--TLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CC--EEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 999999999999999999999999999876 23 999999996 5788999999999999998 888876553
No 311
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=344.74 Aligned_cols=214 Identities=25% Similarity=0.345 Sum_probs=177.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-- 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-- 113 (449)
..|+++|+++. . +.+|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+....
T Consensus 249 ~~i~~~~l~~~-~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSL-R-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCcccc-c-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCH
Confidence 46899999885 1 35999999999999999999999999999999999999774 89999999875321
Q ss_pred ----cCcEEEEcCCC---CCCCCCCHHHHHHHHH-hccCC-CC-CCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHH
Q 044030 114 ----YGTSAYVTQDD---TLITTLTVKEAVYYSA-QLQLP-DT-MPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQK 182 (449)
Q Consensus 114 ----~~~i~yv~Q~~---~l~~~lTv~e~l~~~~-~~~~~-~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGer 182 (449)
.+.++|++|+. .+++.+|+.+|..+.. ..... .. ......++.+.++++.+++. +..++++.+||||||
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence 24589999985 4688888887743221 00000 01 12233456678899999995 568999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+||++|+.+|+||||||||+|||+.++..+++.|++++++ |. |||++|||+ .++..+||++++|++|+++..+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~--tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DK--GIIIISSEM-PELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CC--EEEEECCCh-HHHHhhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999999999854 55 999999996 5789999999999999999877
Q ss_pred Ch
Q 044030 263 PA 264 (449)
Q Consensus 263 ~~ 264 (449)
++
T Consensus 474 ~~ 475 (491)
T PRK10982 474 DT 475 (491)
T ss_pred cc
Confidence 54
No 312
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.8e-39 Score=316.18 Aligned_cols=199 Identities=24% Similarity=0.391 Sum_probs=162.2
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
....|+++|+++. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 36 ~~~~l~i~nls~~--------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g------ 98 (282)
T cd03291 36 DDNNLFFSNLCLV--------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG------ 98 (282)
T ss_pred CCCeEEEEEEEEe--------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC------
Confidence 3456899999974 246999999999999999999999999999999999999774 89999988
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCChHHH
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSGGQK 182 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSgGer 182 (449)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+ ..++.+..||||||
T Consensus 99 --~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~ 165 (282)
T cd03291 99 --RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQR 165 (282)
T ss_pred --EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHH
Confidence 38999999988875 999999874321 11 11223334344432 22344679999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI-AKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l-~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||++||++|+.+|+++||||||+|||+.++..+.+.+ +.++ + +. |||++||++. .+ ..||++++|++|++++.
T Consensus 166 qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~--tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 166 ARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NK--TRILVTSKME-HL-KKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CC--EEEEEeCChH-HH-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999865 5664 3 44 9999999974 45 68999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|+++++.
T Consensus 240 g~~~~~~ 246 (282)
T cd03291 240 GTFSELQ 246 (282)
T ss_pred CCHHHHH
Confidence 9987654
No 313
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3e-39 Score=293.67 Aligned_cols=156 Identities=30% Similarity=0.509 Sum_probs=138.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| +++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~ 71 (163)
T cd03216 1 LELRGITKRF------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRD 71 (163)
T ss_pred CEEEEEEEEE------CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHH
Confidence 4689999983 3457999999999999999999999999999999999999774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++| ||||||||++||+||
T Consensus 72 ~~~~~i~~~~q------------------------------------------------------LS~G~~qrl~laral 97 (163)
T cd03216 72 ARRAGIAMVYQ------------------------------------------------------LSVGERQMVEIARAL 97 (163)
T ss_pred HHhcCeEEEEe------------------------------------------------------cCHHHHHHHHHHHHH
Confidence 1245788887 999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
+.+|++++|||||+|||+.++..+.+.|++++++ |. |||++||++ .++.+.||++++|++|++++
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GV--AVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999744 54 999999996 46888999999999999875
No 314
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.2e-39 Score=295.43 Aligned_cols=163 Identities=32% Similarity=0.507 Sum_probs=143.2
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
++++|+++.| . +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|. +.+
T Consensus 1 i~~~~~~~~~-~----~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~i 66 (166)
T cd03223 1 IELENLSLAT-P----DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------EDL 66 (166)
T ss_pred CEEEEEEEEc-C----CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ceE
Confidence 4689999983 2 2356999999999999999999999999999999999998774 899999874 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
+|++|++.++ ..|+.||+.+. .+..||||||||++||+||+.+|++
T Consensus 67 ~~~~q~~~~~-~~tv~~nl~~~---------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 67 LFLPQRPYLP-LGTLREQLIYP---------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EEECCCCccc-cccHHHHhhcc---------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 9999998765 56999998542 3578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
++|||||+|||+.++..+.+.|+++ +. |+|++||++. ....||++++|++|
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~----~~--tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL----GI--TVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh----CC--EEEEEeCChh--HHhhCCEEEEEcCC
Confidence 9999999999999999999999875 34 9999999973 45799999999875
No 315
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.1e-39 Score=347.75 Aligned_cols=211 Identities=23% Similarity=0.322 Sum_probs=175.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
.+++++||++.| . +++.+|+|+||+|++|++++|+|||||||||||++|+|+.+|+ +|+|.+++. .
T Consensus 3 ~~i~~~nls~~~-~----~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~ 68 (552)
T TIGR03719 3 YIYTMNRVSKVV-P----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG------I 68 (552)
T ss_pred EEEEEeeEEEec-C----CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------C
Confidence 468999999983 1 1457999999999999999999999999999999999998774 899999762 3
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccC------------CCCCCHH---------------------HHHHHHHHHHH
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQL------------PDTMPKS---------------------DKKERAEVTIR 162 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~------------~~~~~~~---------------------~~~~~v~~~l~ 162 (449)
.++||+|++.+++.+||.||+.++..... ......+ ....++.++++
T Consensus 69 ~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (552)
T TIGR03719 69 KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMD 148 (552)
T ss_pred EEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHh
Confidence 69999999999999999999987532100 0000000 01245677888
Q ss_pred HcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 163 EMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 163 ~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
.+|+.. .++++.+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++. . |||++||++ ..
T Consensus 149 ~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~----~--tvIiisHd~-~~ 220 (552)
T TIGR03719 149 ALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP----G--TVVAVTHDR-YF 220 (552)
T ss_pred hCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC----C--eEEEEeCCH-HH
Confidence 889864 688999999999999999999999999999999999999999999999998752 3 999999996 57
Q ss_pred HHhhcCeEEEeeCCeEE-EecChhhHH
Q 044030 243 VFQLFHNLCLLSAGQTV-YFGPATAAN 268 (449)
Q Consensus 243 i~~~~D~v~~l~~G~iv-~~g~~~~~~ 268 (449)
+..+||++++|++|+++ +.|+.++..
T Consensus 221 ~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 221 LDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred HHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 88999999999999976 778877543
No 316
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-40 Score=307.01 Aligned_cols=218 Identities=27% Similarity=0.424 Sum_probs=184.4
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc---
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA--- 111 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~--- 111 (449)
...|+++|+++. + +++.||+|+|++|++||-++|+|||||||||||++++|..+|. +|.+.+.|+...
T Consensus 29 ~~li~l~~v~v~--r----~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~ 99 (257)
T COG1119 29 EPLIELKNVSVR--R----NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGE 99 (257)
T ss_pred cceEEecceEEE--E----CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCc
Confidence 456999999998 2 6789999999999999999999999999999999999998874 899999998642
Q ss_pred c---ccCcEEEEcCC--CCCCCCCCHHHHHHHHHh--ccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH
Q 044030 112 L---AYGTSAYVTQD--DTLITTLTVKEAVYYSAQ--LQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 112 ~---~~~~i~yv~Q~--~~l~~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 184 (449)
. .+++||||.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+.+|++...||-|||||
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence 1 24679999765 344566788887754322 1111112335566788999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|.|||||+.+|++|||||||+|||...+..+.+.|.+++...+ +.++|++||++ +++-..+++++++++|+++++|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~-~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPG-APALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCC-CceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999985543 45999999996 68999999999999999999874
No 317
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-40 Score=293.34 Aligned_cols=193 Identities=25% Similarity=0.443 Sum_probs=171.5
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLIT 128 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~ 128 (449)
++..||+|+||.+.+||..+|.||||||||||+|+++.+.+|+ +|.+++.|++... .+..++|+.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 5678999999999999999999999999999999999999874 9999999998642 1357999999999999
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgL 207 (449)
+ ||++|+.|...++... ..+..+.++++.+++.+ .+++.+.+||||||||++|+|.|..-|+||+||||||+|
T Consensus 91 ~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred c-chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 8 9999999987765321 13456778999999975 689999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|+.++..|-++|.++.++... .++-+|||+ ++..+.+|+++-+..|++
T Consensus 165 D~~nkr~ie~mi~~~v~~q~v--Av~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNV--AVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhce--EEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 999999999999998866655 999999997 577899999999999875
No 318
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-39 Score=306.13 Aligned_cols=191 Identities=27% Similarity=0.404 Sum_probs=168.1
Q ss_pred eeEEEEeeEEEEeecCc--cc--ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc
Q 044030 36 VFLTWKDLTVTIVSNGK--KG--SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~--~~--~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~ 111 (449)
..++++||++.| ..+. .. ...+++||||+|++||+++|+|.||||||||-|+|.|+.+| ++|+|+++|++..
T Consensus 3 ~ll~v~~l~k~f-~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~ 78 (268)
T COG4608 3 PLLEVKNLKKYF-PVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDIT 78 (268)
T ss_pred ceEEEeccEEEE-ecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchh
Confidence 368999999984 3221 11 24799999999999999999999999999999999999987 4999999998743
Q ss_pred cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHH
Q 044030 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 112 ~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~a 190 (449)
... ..+..+++.++|+.+|+. +.+++++++||||||||++||||
T Consensus 79 ~~~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 79 KLS-----------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred hcc-----------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHH
Confidence 111 234567799999999996 48899999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|+++++|||+|+||...+.+++++|+++.++.|. |.+++|||. +.+..++|++++|..|+++..|+.+++.
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~l--t~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGL--TYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCC--eEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHh
Confidence 99999999999999999999999999999999988876 999999996 5789999999999999999999998763
No 319
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.4e-38 Score=341.65 Aligned_cols=204 Identities=22% Similarity=0.356 Sum_probs=172.2
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...|+++||++.| +++.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.+++.
T Consensus 322 ~~~l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------ 386 (556)
T PRK11819 322 DKVIEAENLSKSF------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------ 386 (556)
T ss_pred CeEEEEEeEEEEE------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------
Confidence 3579999999983 3467999999999999999999999999999999999998774 899999542
Q ss_pred CcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHH
Q 044030 115 GTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 115 ~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
..+||++|+. .+++.+||.|++.+..... ..... ...+.++++.+|+.+ ..++++.+|||||||||+||+||+
T Consensus 387 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 387 VKLAYVDQSRDALDPNKTVWEEISGGLDII---KVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLK 461 (556)
T ss_pred eEEEEEeCchhhcCCCCCHHHHHHhhcccc---ccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 2589999996 7888999999998865322 11111 123457899999974 679999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC-CeEE-EecChh
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA-GQTV-YFGPAT 265 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~-G~iv-~~g~~~ 265 (449)
.+|++|||||||+|||+.++..+.+.|+++. + |||++|||+ ..+..+||++++|++ |++. +.|+.+
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEFP-----G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-----C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 9999999999999999999999999999873 3 899999996 578999999999986 7776 456543
No 320
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1e-38 Score=315.12 Aligned_cols=225 Identities=23% Similarity=0.380 Sum_probs=196.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKA--- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~--- 111 (449)
.|+++|+++.+ . ...+...++++|||++.+||.+||+|.||||||-..+.|+|+++.. ...+|+|.++|++.-
T Consensus 6 lL~v~nLsV~f-~-~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 6 LLSIRNLSVAF-H-QEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred ceeeeccEEEE-e-cCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 58999999984 2 2336788999999999999999999999999999999999999652 234899999998741
Q ss_pred ------cccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch---hhCccCCCCChH
Q 044030 112 ------LAYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---AMNTRIRRLSGG 180 (449)
Q Consensus 112 ------~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgG 180 (449)
.+..+|+++||++ .+.|-.|+...+.-..+++ .+++.++.++++.++|+.+|+.+ ..+.++++||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 1224799999997 5788889998888777665 35678888999999999999953 578999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||.||+||+++|++||.||||++||...+.+|+++|+++.++.|. .++++|||. .-+.+++|+|+||.+|++++
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gM--a~lfITHDL-~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGM--AILFITHDL-GIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCc--EEEEEeccH-HHHHHhhhhEEEEeccEEee
Confidence 999999999999999999999999999999999999999999988866 999999997 57899999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 239 ~~~t~~lF 246 (534)
T COG4172 239 TGTTETLF 246 (534)
T ss_pred cCcHHHHh
Confidence 99987664
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2e-38 Score=340.21 Aligned_cols=202 Identities=22% Similarity=0.372 Sum_probs=171.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
..++++|+++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|. +|+|.+++. .
T Consensus 321 ~~l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------~ 385 (552)
T TIGR03719 321 KVIEAENLSKGF------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------V 385 (552)
T ss_pred eEEEEeeEEEEE------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------e
Confidence 469999999983 3467999999999999999999999999999999999998774 899999542 2
Q ss_pred cEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHh
Q 044030 116 TSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 116 ~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.++|++|+. .+++.+||.|++.++.... ..... ...+.++++.+|+.. ..++++..|||||||||+||++|+.
T Consensus 386 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~ 460 (552)
T TIGR03719 386 KLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS 460 (552)
T ss_pred EEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh
Confidence 589999996 4788899999998864322 11111 223567899999974 6799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC-CeEE-EecCh
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA-GQTV-YFGPA 264 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~-G~iv-~~g~~ 264 (449)
+|++|||||||+|||+.++..+++.|+++. + |||++|||+ ..+..+||++++|++ |+++ +.|+.
T Consensus 461 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 461 GGNVLLLDEPTNDLDVETLRALEEALLEFA-----G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC-----C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCH
Confidence 999999999999999999999999999873 3 899999996 578899999999986 5776 44554
No 322
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.6e-38 Score=340.11 Aligned_cols=199 Identities=25% Similarity=0.318 Sum_probs=173.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++++|+++.| ++. .|+++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 338 ~~~l~~~~ls~~~------~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~-------- 399 (590)
T PRK13409 338 ETLVEYPDLTKKL------GDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE-------- 399 (590)
T ss_pred ceEEEEcceEEEE------CCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe--------
Confidence 3569999999983 222 599999999999999999999999999999999999774 8999986
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
..++|++|+..+++.+||+|++.+..... .. ...+.++++.++|.+..++++.+|||||||||+||+||+.+
T Consensus 400 ~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 400 LKISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred eeEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 14899999988888999999998753211 11 12467899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||||+|||+.++..+.+.|++++++.|. |||++|||+ .++..+||++++|+ |++...|.
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREA--TALVVDHDI-YMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999999866555 999999996 57889999999996 57777765
No 323
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-39 Score=290.30 Aligned_cols=219 Identities=26% Similarity=0.413 Sum_probs=191.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-Eeccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-HKKAL-- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g-~~~~~-- 112 (449)
..|+++||+++ + ++..+|+|+||++.+||+-+|||||||||||+|.+|+|..+| .+|+|+++| .++..
T Consensus 4 ~iL~~~~vsVs-F-----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp---~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVS-F-----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP---QEGEVLFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEE-E-----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC---CcceEEEcCchhhccCC
Confidence 46899999998 3 677899999999999999999999999999999999999877 489999999 44321
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-----TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
.+..||-=||.+..|..+||+|||.++.....+. .....+.+++++++|+..||.+..+.....||-||||
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 2346889999999999999999999986532110 0112344678999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
++.|++-++++|++|++|||++|+--....+.-++|+.++. +.+|+++-||+ ..+.+++|+|-+|++|.+...|+
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~----~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EGs 229 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG----KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEGS 229 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc----CceEEEEeccH-HHHHHhhheeEEEeccceeeccc
Confidence 99999999999999999999999999999999999999985 33999999996 68999999999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
.+++.
T Consensus 230 ld~v~ 234 (249)
T COG4674 230 LDEVQ 234 (249)
T ss_pred HHHhh
Confidence 88764
No 324
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.5e-39 Score=373.98 Aligned_cols=215 Identities=24% Similarity=0.373 Sum_probs=173.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--------------------
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-------------------- 96 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-------------------- 96 (449)
.|+++||+|.| .. +.++++|+|+||+|++|+.+||+||||||||||+++|+|++.|.
T Consensus 1165 ~I~f~nVsF~Y-~~--~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRY-IS--RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEEC-CC--CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 59999999993 21 12357999999999999999999999999999999999999872
Q ss_pred -------------------------------CCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 044030 97 -------------------------------TRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTLTVKEAVYYSA 140 (449)
Q Consensus 97 -------------------------------~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 140 (449)
.+.+|+|++||.++.. .++.++||+|++.+|+. |++|||.|+.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCC
Confidence 0248999999998632 24679999999999975 9999998873
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCc-------hhhCccC----CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 141 QLQLPDTMPKSDKKERAEVTIREMGLQ-------DAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~~----~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
. ..+.+ .+.+.++..++. +-.|+.+ ..||||||||++|||||+.+|+|||||||||+||+
T Consensus 1321 ~-----~at~e----eI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1321 E-----DATRE----DVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred C-----CCCHH----HHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 2 12222 244444444332 2334444 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC----CeEE-EecChhhHH
Q 044030 210 AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA----GQTV-YFGPATAAN 268 (449)
Q Consensus 210 ~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~----G~iv-~~g~~~~~~ 268 (449)
.+...|.+.|.++.+..++ |+|+++|+++ ..+.||+|++|++ |+++ ..|+.+++.
T Consensus 1392 ~sE~~I~~~L~~~~~~~~~--TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1392 NSEKLIEKTIVDIKDKADK--TIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHHHHHHHHHHHhccCCC--EEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999998522344 9999999973 4677999999999 9955 899988774
No 325
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-38 Score=370.75 Aligned_cols=209 Identities=21% Similarity=0.289 Sum_probs=173.4
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| . .+...+|+|+||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.++..
T Consensus 1236 g~I~f~nVsf~Y-~---~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l 1308 (1622)
T PLN03130 1236 GSIKFEDVVLRY-R---PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGL 1308 (1622)
T ss_pred CcEEEEEEEEEe-C---CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCH
Confidence 369999999994 2 12347999999999999999999999999999999999999874 8999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSg 179 (449)
.+++++||||++.+|+. |++|||.++. ..+. +.+.++++..++.+ .......+|||
T Consensus 1309 ~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130 1309 MDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred HHHHhccEEECCCCccccc-cHHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence 24679999999999988 9999996542 1122 23445555544432 22333368999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|||+++|+++ .+ ..||+|++|++|+++
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~----~~TvI~IAHRL~-tI-~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK----SCTMLIIAHRLN-TI-IDCDRILVLDAGRVV 1451 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC----CCEEEEEeCChH-HH-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998853 449999999974 44 559999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
++|+++++.
T Consensus 1452 E~Gt~~eLl 1460 (1622)
T PLN03130 1452 EFDTPENLL 1460 (1622)
T ss_pred EeCCHHHHH
Confidence 999999875
No 326
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-38 Score=370.05 Aligned_cols=208 Identities=20% Similarity=0.313 Sum_probs=173.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| . .+.+.+|+|+||+|++||.+||+||||||||||+++|.|+++|. +|+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y-~---~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~ 1306 (1495)
T PLN03232 1234 SIKFEDVHLRY-R---PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLT 1306 (1495)
T ss_pred cEEEEEEEEEE-C---CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHH
Confidence 59999999994 2 13357999999999999999999999999999999999999874 8999999998632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSgG 180 (449)
.+++++||||++.+|+. |++|||.++. ..+. +++.+.++..++.+ .......+||||
T Consensus 1307 ~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgG 1375 (1495)
T PLN03232 1307 DLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVG 1375 (1495)
T ss_pred HHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHH
Confidence 24679999999999987 9999996532 1222 23445555555433 233334689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|+|+++|+++ .+ ..||+|++|++|++++
T Consensus 1376 QrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~----~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1376 QRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK----SCTMLVIAHRLN-TI-IDCDKILVLSSGQVLE 1449 (1495)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC----CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999998753 449999999973 44 5599999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 1450 ~Gt~~eLl 1457 (1495)
T PLN03232 1450 YDSPQELL 1457 (1495)
T ss_pred ECCHHHHH
Confidence 99998875
No 327
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.7e-37 Score=291.15 Aligned_cols=219 Identities=21% Similarity=0.308 Sum_probs=191.1
Q ss_pred eEEEEeeEEEEeec----------------C--cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 044030 37 FLTWKDLTVTIVSN----------------G--KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR 98 (449)
Q Consensus 37 ~l~~~nls~~~~~~----------------~--~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~ 98 (449)
.++++||++.|-.. + +.....+|+||||++++||.+||+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 57788888874211 0 124467999999999999999999999999999999999999885
Q ss_pred ceeEEEECCEecccccCcEEEEcC-CCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCC
Q 044030 99 QTGKILINGHKKALAYGTSAYVTQ-DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL 177 (449)
Q Consensus 99 ~~G~I~~~g~~~~~~~~~i~yv~Q-~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L 177 (449)
+|+|.++|+-.. +.. ...+-|.+|.+||+.+...+. +++.++.+++++++++.-+|.+..|++++.+
T Consensus 81 -~G~v~v~G~v~~--------li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~PvktY 148 (249)
T COG1134 81 -SGKVKVTGKVAP--------LIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVKTY 148 (249)
T ss_pred -CceEEEcceEeh--------hhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchhhc
Confidence 999999997421 111 124557899999999988765 5778899999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 178 SgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|.||+-|+++|.|...+|++||+||-.+-.|+.-+++-.+.+.++.++ +. |||++|||+ ..+.++||++++|++|+
T Consensus 149 SSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~--tiv~VSHd~-~~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 149 SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NK--TIVLVSHDL-GAIKQYCDRAIWLEHGQ 224 (249)
T ss_pred cHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CC--EEEEEECCH-HHHHHhcCeeEEEeCCE
Confidence 999999999999999999999999999999999999999999999754 34 999999996 68999999999999999
Q ss_pred EEEecChhhHHHHHHH
Q 044030 258 TVYFGPATAANEFFAF 273 (449)
Q Consensus 258 iv~~g~~~~~~~~f~~ 273 (449)
+.+.|+++++.++|..
T Consensus 225 i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 225 IRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEcCCHHHHHHHHHH
Confidence 9999999999887754
No 328
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.8e-38 Score=339.13 Aligned_cols=194 Identities=28% Similarity=0.430 Sum_probs=159.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||+++| .. +++++|+|+|+++++||.++|+||||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 320 ~i~~~~v~f~y-~~---~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 320 SLEFSGLSVAY-PG---RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADAD 392 (529)
T ss_pred eEEEEEEEEEC-CC---CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHH
Confidence 69999999993 21 2347999999999999999999999999999999999999874 8999999997532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-----------MNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. ..++ +.+.+.++..++.+. .......||||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred HHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence 13579999999999976 99999987531 1122 234455555555432 23334689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
||||++|||||+++|++++||||||+||+.+...+.+.|+++. + ++|+|++||+++ ..+.||+|++|
T Consensus 463 q~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~---~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 463 QAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-Q---GRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-C---CCEEEEEecCHH--HHHhCCEEEeC
Confidence 9999999999999999999999999999999999999999985 2 449999999973 45789999875
No 329
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.4e-38 Score=337.35 Aligned_cols=200 Identities=23% Similarity=0.265 Sum_probs=167.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| . ++..+|+|+|+++++|+.++|+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 322 ~i~~~~v~f~y-~----~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~ 393 (547)
T PRK10522 322 TLELRNVTFAY-Q----DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPE 393 (547)
T ss_pred eEEEEEEEEEe-C----CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHH
Confidence 69999999983 2 2346999999999999999999999999999999999999874 8999999998642
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCcc-----CCCCChHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR-----IRRLSGGQKRRVS 186 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----~~~LSgGerqRv~ 186 (449)
.++.++||+|++.+|+. |++|| + . ...++.+.+.++.+++.+..+.. ..+||||||||++
T Consensus 394 ~~~~~i~~v~q~~~lf~~-ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~ 459 (547)
T PRK10522 394 DYRKLFSAVFTDFHLFDQ-LLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLA 459 (547)
T ss_pred HHhhheEEEecChhHHHH-hhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHH
Confidence 23579999999998876 77776 1 0 11234577888889887654322 3589999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||||++.+|++++||||||+||+.++..+.+.|.+..++.++ |+|++||++ +....||++++|++|+++...
T Consensus 460 lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~--tvi~itH~~--~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 460 LLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGK--TIFAISHDD--HYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC--EEEEEEech--HHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999876533445 999999997 356789999999999998763
No 330
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=8.1e-39 Score=341.73 Aligned_cols=182 Identities=30% Similarity=0.483 Sum_probs=150.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||++.| . +++.+|+|+||++++||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+...
T Consensus 333 ~~I~~~~vsf~Y-~----~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~ 404 (529)
T TIGR02868 333 PTLELRDLSFGY-P----GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQD 404 (529)
T ss_pred ceEEEEEEEEec-C----CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHH
Confidence 359999999993 2 2346999999999999999999999999999999999999874 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-------hCccC----CCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-------MNTRI----RRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~----~~LSgG 180 (449)
.++.++||||++.+|+. |++||+.++.. ..+ ++++.+.++..++++. .|+.+ ..||||
T Consensus 405 ~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 405 ELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred HHHhheEEEccCcccccc-cHHHHHhccCC-----CCC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 13579999999999988 99999988631 112 2345556666665443 24443 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
||||++|||||+.+|++++||||||+||+.+...|.+.|.++.+ ++|+|++||++
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~----~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALS----GKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC----CCEEEEEecCC
Confidence 99999999999999999999999999999999999999998752 45999999984
No 331
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2e-38 Score=321.06 Aligned_cols=223 Identities=26% Similarity=0.406 Sum_probs=182.1
Q ss_pred cccCCCCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 044030 28 INVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107 (449)
Q Consensus 28 ~~~~~~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g 107 (449)
+.+|. +.-.|.++++++. +. ..++++|+|+||++.+||.+|||||||||||||.|+|.|..+| .+|.|++||
T Consensus 326 m~LP~-P~g~L~Ve~l~~~--PP--g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p---~~G~VRLDg 397 (580)
T COG4618 326 MPLPA-PQGALSVERLTAA--PP--GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDG 397 (580)
T ss_pred CCCCC-CCceeeEeeeeec--CC--CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc---CCCcEEecc
Confidence 44443 3456899999985 32 2457899999999999999999999999999999999999987 499999999
Q ss_pred Eeccc-----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHH-----HHHHHHHHHHHcCCchhhCccC---
Q 044030 108 HKKAL-----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSD-----KKERAEVTIREMGLQDAMNTRI--- 174 (449)
Q Consensus 108 ~~~~~-----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~~--- 174 (449)
.+... ..++|||+||+-.+|+. ||.|||. ++. ...+.+. +...+.+++ +.+.+-.|+.+
T Consensus 398 a~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa---Rf~--~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~~ 469 (580)
T COG4618 398 ADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA---RFG--EEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEG 469 (580)
T ss_pred hhhhcCCHHHhccccCcCcccceecCC-cHHHHHH---hcc--ccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCCC
Confidence 87532 23689999999999999 9999994 322 1122211 111233333 34555667776
Q ss_pred -CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 175 -RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 175 -~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
..||||||||+++||||..+|.+++||||-|+||......+.+.|.+++++ |. |+|+++|.| .+...+|+|++|
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r-G~--~vvviaHRP--s~L~~~Dkilvl 544 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GG--TVVVIAHRP--SALASVDKILVL 544 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc-CC--EEEEEecCH--HHHhhcceeeee
Confidence 689999999999999999999999999999999999999999999999854 44 999999998 478899999999
Q ss_pred eCCeEEEecChhhHHHHH
Q 044030 254 SAGQTVYFGPATAANEFF 271 (449)
Q Consensus 254 ~~G~iv~~g~~~~~~~~f 271 (449)
++|++..+|+.+++....
T Consensus 545 ~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 545 QDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cCChHHhcCCHHHHHHHh
Confidence 999999999999987654
No 332
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-38 Score=290.51 Aligned_cols=218 Identities=27% Similarity=0.412 Sum_probs=181.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA---- 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~---- 113 (449)
++++|+++. ++++....+++|+++|++|.+|+++.|+|.||||||||+|+|+|.+.|+ +|+|.++|.+++..
T Consensus 2 i~~~~~~~~-f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 2 ISLSNATKT-FFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAK 77 (263)
T ss_pred cccccceee-ecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHH
Confidence 567788887 4444445688999999999999999999999999999999999999874 99999999987532
Q ss_pred -cCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCH---HHHHHHHHHHHHHc--CCchhhCccCCCCChHHHHHH
Q 044030 114 -YGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPK---SDKKERAEVTIREM--GLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 114 -~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv 185 (449)
...++-|+|++. ..+.||+.||+.++..-....+... ...++...+.++.+ ||++.+++++.-|||||||-+
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 135788999975 5899999999998764211112222 12233344555655 678999999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
++++|-++.|+||+|||-|++|||.++..+++.=.++.++.+. |.+|+||.+ ..+..+-+|.++|++|+|+.+-
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~kl--TtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL--TTLMVTHNM-EDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCC--ceEEEeccH-HHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999999999999999999877766 999999996 5789999999999999999874
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=338.45 Aligned_cols=203 Identities=24% Similarity=0.402 Sum_probs=173.1
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...|+++||++.| +++.+|+|+||+|++|+++||+|||||||||||++|+|.++|+ +|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------ 374 (638)
T PRK10636 310 NPLLKMEKVSAGY------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------ 374 (638)
T ss_pred CceEEEEeeEEEe------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------
Confidence 4469999999983 4467999999999999999999999999999999999999774 899999742
Q ss_pred CcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHH
Q 044030 115 GTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 115 ~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+||++|+. .+.+..|+.+++.. .. .......+.++++.+++. +..++++..|||||||||+||++|
T Consensus 375 ~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l 445 (638)
T PRK10636 375 IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIV 445 (638)
T ss_pred EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 2589999974 35566788777531 11 112245678899999996 478999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE-EecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV-YFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv-~~g~~~~~~ 268 (449)
+.+|++|||||||+|||+.++..+.+.|+++ + | |||++|||+ ..+..+||++++|++|+++ +.|+.++..
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~-g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF----E-G-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----C-C-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999987 2 3 999999996 5788999999999999997 889887654
No 334
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.5e-38 Score=335.23 Aligned_cols=203 Identities=22% Similarity=0.294 Sum_probs=166.6
Q ss_pred eeEEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
..++++||++.| . ++.+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.+||.+...
T Consensus 336 ~~i~~~~v~f~y-~-~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 336 DSIELKDVHMNP-K-APEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADS 410 (555)
T ss_pred ceEEEEEEEEEe-C-CCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCC
Confidence 469999999993 2 1111 236999999999999999999999999999999999999874 8999999987642
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC------CCCChHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI------RRLSGGQKR 183 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~------~~LSgGerq 183 (449)
.++.++||+|++.+|.. |+++|.. + ...++++.++++.+++.+..+..+ ..|||||||
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HHHHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 13569999999998876 7888730 1 123345778899999887655443 569999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA-KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~-~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|++||||++.+|++++|||||++||+.++..+.+.+. .++ ..++ |+|++||+++ ..+.||+|++|++|+++..
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-~~~~--tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-RQGK--TIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCC--EEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998764 454 3344 9999999973 5678999999999999754
No 335
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-37 Score=337.84 Aligned_cols=205 Identities=23% Similarity=0.360 Sum_probs=172.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...|+++||++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+ |.+
T Consensus 317 ~~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~----- 381 (635)
T PRK11147 317 KIVFEMENVNYQI------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK----- 381 (635)
T ss_pred CceEEEeeeEEEE------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC-----
Confidence 4569999999983 4467999999999999999999999999999999999998774 899998 432
Q ss_pred CcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHH
Q 044030 115 GTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 115 ~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
-.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..+++++.|||||||||+||++|+
T Consensus 382 ~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 382 LEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFL 456 (635)
T ss_pred cEEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 2589999985 5889999999998753211 011 1234577889999995 5789999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee-CCeEEEe-cChhh
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS-AGQTVYF-GPATA 266 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~-~G~iv~~-g~~~~ 266 (449)
.+|++|||||||+|||+.++..+.+.|+++ +. |||++|||. ..+..+||++++|+ +|++..+ |+-++
T Consensus 457 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~--tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 457 KPSNLLILDEPTNDLDVETLELLEELLDSY----QG--TVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CC--eEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999999999999999999999999875 22 999999995 57889999999998 7998654 55443
No 336
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.2e-38 Score=303.95 Aligned_cols=198 Identities=25% Similarity=0.350 Sum_probs=164.5
Q ss_pred eeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEec
Q 044030 42 DLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL-----------INGHKK 110 (449)
Q Consensus 42 nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~-----------~~g~~~ 110 (449)
||+++| . ..+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+ +|+|+ ++|.+.
T Consensus 5 ~~~~~y-~----~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~ 75 (255)
T cd03236 5 EPVHRY-G----PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSEL 75 (255)
T ss_pred Ccceee-c----CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchh
Confidence 566662 1 2236999999 59999999999999999999999999999874 99996 778764
Q ss_pred cc-----c--cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 111 AL-----A--YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 111 ~~-----~--~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
.. . ...++|++|+..+++. ++.+++.+... ....++.+.++++.+|+.+..++.+..|||||||
T Consensus 76 ~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 146 (255)
T cd03236 76 QNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQ 146 (255)
T ss_pred hhhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 21 1 1247899999888884 88888876421 1233456789999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ ++ |||++||++ ..+..+||++++|+ |++.+.|
T Consensus 147 rv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~--tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 147 RVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED-DN--YVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CC--EEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999999999854 45 999999996 57888999999995 6666544
No 337
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.7e-37 Score=364.32 Aligned_cols=210 Identities=20% Similarity=0.278 Sum_probs=173.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| .. +...+|+||||+|++||.+||+|+||||||||+++|.|++.|. +|+|.+||.++..
T Consensus 1283 g~I~f~nVsf~Y-~~---~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957 1283 GRVEFRNYCLRY-RE---DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGL 1355 (1522)
T ss_pred CcEEEEEEEEEe-CC---CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCH
Confidence 369999999994 21 2346999999999999999999999999999999999999774 8999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-------hhCccC----CCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-------AMNTRI----RRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~~----~~LSg 179 (449)
.+++++||||++.+|+. |++|||.... ..++ +.+.+.++..++.+ -+|+.+ .+|||
T Consensus 1356 ~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1424 (1522)
T TIGR00957 1356 HDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV 1424 (1522)
T ss_pred HHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH
Confidence 24679999999999998 9999996211 1222 23445555555432 234444 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|||+++|+++ ....||+|++|++|+++
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~----~~TvI~IAHRl~--ti~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE----DCTVLTIAHRLN--TIMDYTRVIVLDKGEVA 1498 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC----CCEEEEEecCHH--HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998753 449999999973 45569999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
+.|+++++..
T Consensus 1499 E~G~~~eLl~ 1508 (1522)
T TIGR00957 1499 EFGAPSNLLQ 1508 (1522)
T ss_pred EECCHHHHHh
Confidence 9999988753
No 338
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.2e-37 Score=363.07 Aligned_cols=209 Identities=19% Similarity=0.311 Sum_probs=174.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| .. +...+|+||||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.++..
T Consensus 1307 G~I~f~nVsf~Y-~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l 1379 (1560)
T PTZ00243 1307 GSLVFEGVQMRY-RE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGL 1379 (1560)
T ss_pred CeEEEEEEEEEe-CC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCH
Confidence 359999999994 21 2346999999999999999999999999999999999999874 8999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-------hCccC----CCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-------MNTRI----RRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~----~~LSg 179 (449)
.++.++||||++.+|+. |++|||.... ..+ ++.+.+.++..++.+. .|+.+ .+|||
T Consensus 1380 ~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSg 1448 (1560)
T PTZ00243 1380 RELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSV 1448 (1560)
T ss_pred HHHHhcceEECCCCccccc-cHHHHhCccc------CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCH
Confidence 24679999999999987 9999995321 122 2346666776666543 34444 57999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 180 GQKRRVSISIEILTR-PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 180 GerqRv~ia~aL~~~-P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||++|||||+++ |+|||||||||+||+.+...|.+.|++..+ ++|||+++|+++ ....||+|++|++|++
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~----~~TvI~IAHRl~--ti~~~DrIlVLd~G~V 1522 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS----AYTVITIAHRLH--TVAQYDKIIVMDHGAV 1522 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC----CCEEEEEeccHH--HHHhCCEEEEEECCEE
Confidence 999999999999996 899999999999999999999999998753 349999999973 5577999999999999
Q ss_pred EEecChhhHH
Q 044030 259 VYFGPATAAN 268 (449)
Q Consensus 259 v~~g~~~~~~ 268 (449)
++.|+++++.
T Consensus 1523 vE~Gt~~eLl 1532 (1560)
T PTZ00243 1523 AEMGSPRELV 1532 (1560)
T ss_pred EEECCHHHHH
Confidence 9999998875
No 339
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=8.3e-38 Score=350.12 Aligned_cols=221 Identities=30% Similarity=0.481 Sum_probs=200.5
Q ss_pred eeEEEEeeEEEEeecCcccccc-eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSS-ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~-iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
..+..+|+++.| +.+. +++++|+.|++||+.|++|||||||||++|+|+|..+| ++|+++++|.+...
T Consensus 563 ~~~~~~~L~k~y------~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~---t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVY------GGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP---TSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeee------cchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC---CcceEEEecCcccccc
Confidence 457889999873 2222 99999999999999999999999999999999999877 49999999987532
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.+||+||++.+++.+|.+|++.+.++++ +.+..+.++.++.+++.++|.+.++++++.+|||+|||+++|
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFA 710 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHH
Confidence 3467999999999999999999999999987 566777788899999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
.|++.+|++++|||||+|+||.+++.++++++++.+ .|+ .||++||.+ +|...+|||+.+|.+|++...|++++++
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~--aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGK--AIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCC--EEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHH
Confidence 999999999999999999999999999999999985 443 999999995 6899999999999999999999999998
Q ss_pred HHHH
Q 044030 269 EFFA 272 (449)
Q Consensus 269 ~~f~ 272 (449)
..|.
T Consensus 787 srfG 790 (885)
T KOG0059|consen 787 SRYG 790 (885)
T ss_pred hhcC
Confidence 7664
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-37 Score=334.15 Aligned_cols=207 Identities=22% Similarity=0.391 Sum_probs=166.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
+|+++||+++| +++.+|+||||+|++|+++||+||||||||||||+|+|.++|+ +|+|.++|.. .
T Consensus 1 ~i~i~nls~~~------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~------~ 65 (638)
T PRK10636 1 MIVFSSLQIRR------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW------Q 65 (638)
T ss_pred CEEEEEEEEEe------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC------E
Confidence 37899999983 5578999999999999999999999999999999999998774 8999998842 3
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHh-----------------------ccC-CCCCCHHHHHHHHHHHHHHcCCc-hhhC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQ-----------------------LQL-PDTMPKSDKKERAEVTIREMGLQ-DAMN 171 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 171 (449)
++|++|+...+ ..|+.+++.-... +.. .......+.+.++.++++.+|+. +..+
T Consensus 66 i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~ 144 (638)
T PRK10636 66 LAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE 144 (638)
T ss_pred EEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc
Confidence 78999865333 2465554421100 000 00000112345788999999997 5789
Q ss_pred ccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 172 ~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
+++..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +. |||++|||. ..+..+||+++
T Consensus 145 ~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~--tviivsHd~-~~l~~~~d~i~ 217 (638)
T PRK10636 145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QG--TLILISHDR-DFLDPIVDKII 217 (638)
T ss_pred CchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CC--eEEEEeCCH-HHHHHhcCEEE
Confidence 999999999999999999999999999999999999999999999998865 33 999999996 57889999999
Q ss_pred EeeCCeEE-EecChhh
Q 044030 252 LLSAGQTV-YFGPATA 266 (449)
Q Consensus 252 ~l~~G~iv-~~g~~~~ 266 (449)
+|++|+++ |.|+.+.
T Consensus 218 ~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 218 HIEQQSLFEYTGNYSS 233 (638)
T ss_pred EEeCCEEEEecCCHHH
Confidence 99999996 5676553
No 341
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-37 Score=343.91 Aligned_cols=216 Identities=29% Similarity=0.451 Sum_probs=179.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.++++||+|.| + .+.+.+||+|+|+++++|+.+||+|||||||||.+-+|-..+.|+ +|.|.+||.+++.
T Consensus 986 G~I~~~~V~F~Y-P--sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl 1059 (1228)
T KOG0055|consen 986 GDIEFRNVSFAY-P--TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNL 1059 (1228)
T ss_pred eEEEEeeeEeeC-C--CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCH
Confidence 359999999994 3 235678999999999999999999999999999999999999874 8999999988642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHH-HHH--cCCchhhCccC----CCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT-IRE--MGLQDAMNTRI----RRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~~~~~----~~LSgGerq 183 (449)
.++++|.|.|+|.||.. |++||+.|+.. ..+.++..+.++.. +.. .+|.+-.|+++ .+|||||||
T Consensus 1060 ~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-----~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1060 KWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-----EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQ 1133 (1228)
T ss_pred HHHHHhcceeccCchhhcc-cHHHHHhccCC-----CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHH
Confidence 24689999999999987 99999999821 13333322211110 111 25566666666 589999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||||+++||+||||||.||+||+++.+.+-+.|.+... |+|.|++.|.++ ..+.||.|+|+++|+++++|+
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~----gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME----GRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGT 1207 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc----CCcEEEEecchh--hhhcCCEEEEEECCEEEeccc
Confidence 99999999999999999999999999999999999999873 459999999974 467899999999999999999
Q ss_pred hhhHHH
Q 044030 264 ATAANE 269 (449)
Q Consensus 264 ~~~~~~ 269 (449)
-+++..
T Consensus 1208 H~~L~~ 1213 (1228)
T KOG0055|consen 1208 HDELLA 1213 (1228)
T ss_pred HHHHHh
Confidence 988764
No 342
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-37 Score=270.18 Aligned_cols=202 Identities=27% Similarity=0.407 Sum_probs=174.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
+++++||+.. . ++...|-|+|++|.+||++.|||||||||||||.-+.|.+.+.-..+|++++|++..+. .
T Consensus 2 ~l~l~nvsl~-l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~ 75 (213)
T COG4136 2 MLCLKNVSLR-L-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA 75 (213)
T ss_pred ceeeeeeeec-C-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh
Confidence 5789999976 2 56789999999999999999999999999999999999998876789999999998643 3
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+++|.++||+.+||+++|.+|+.|+... .+.-..++..++..+++.||+...++.+..||||||-||++-|+|+.
T Consensus 76 qRq~GiLFQD~lLFphlsVg~Nl~fAlp~----~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 76 QRQIGILFQDALLFPHLSVGQNLLFALPA----TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151 (213)
T ss_pred hhheeeeecccccccccccccceEEecCc----ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh
Confidence 57899999999999999999999987543 33344566778899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL 252 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~ 252 (449)
.|+.++||||+|.||..-+.++.+.+-.-.+..|. .+|++|||. .++. .-.||+-
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agi--Ptv~VTHD~-~Dvp-agsrVie 206 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI--PTVQVTHDL-QDVP-AGSRVIE 206 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCC--CeEEEeccc-ccCC-CCCeeee
Confidence 99999999999999999999999998776667766 999999995 3443 3334443
No 343
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=8.3e-37 Score=272.06 Aligned_cols=144 Identities=31% Similarity=0.475 Sum_probs=130.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
++++|+++.| ++..+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|. ..+
T Consensus 1 l~~~~l~~~~------~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~------~~i 65 (144)
T cd03221 1 IELENLSKTY------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST------VKI 65 (144)
T ss_pred CEEEEEEEEE------CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe------EEE
Confidence 4688999873 2346999999999999999999999999999999999998774 899999985 358
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
+|++| ||+||+||++||+||+.+|++
T Consensus 66 ~~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 66 GYFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 99998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
++|||||+|||+.++..+.+.|+++ +. |||++||++ +++..+||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~----~~--til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY----PG--TVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc----CC--EEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 23 999999996 57888999999999985
No 344
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.8e-37 Score=357.80 Aligned_cols=209 Identities=27% Similarity=0.392 Sum_probs=166.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN-GHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~-g~~~~~--- 112 (449)
.|+++||++.| .. ...+++|+|+||+|++||++||+||||||||||+++|+|+++|. +|+|+++ |.++..
T Consensus 382 ~I~~~nVsf~Y-~~--~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 382 KIQFKNVRFHY-DT--RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINL 455 (1466)
T ss_pred cEEEEEEEEEc-CC--CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCH
Confidence 68999999983 21 12347999999999999999999999999999999999999874 8999995 565421
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC----------CCC-----------------------------C---
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL----------PDT-----------------------------M--- 148 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~----------~~~-----------------------------~--- 148 (449)
.++.++||+|++.+|+. |++||+.++..... +.. .
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 13569999999999985 99999998642100 000 0
Q ss_pred ------CHHHHHHHHHHHHHHcCCchhh-----------CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 044030 149 ------PKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211 (449)
Q Consensus 149 ------~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~ 211 (449)
.....++.+.++++.+++.+.. +..+..||||||||++|||||+.+|+|||||||||+||+.+
T Consensus 535 l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~s 614 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614 (1466)
T ss_pred hhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 0001224566777777765542 34567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 212 SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 212 ~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
+..+.+.|++++++.|+ |+|+++|+++ .+ +.||+|++|++|
T Consensus 615 e~~i~~~L~~~~~~~g~--TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 615 EYLVQKTINNLKGNENR--ITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHHhhcCCC--EEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 99999999999753455 9999999974 44 789999999986
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.1e-36 Score=329.80 Aligned_cols=205 Identities=20% Similarity=0.375 Sum_probs=168.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
..|+++||++.| . +.+.+|+|+||+|++|++++|+||||||||||||+|+|+++|. +|+|.+++. .
T Consensus 507 ~~L~~~~ls~~y-~----~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------~ 572 (718)
T PLN03073 507 PIISFSDASFGY-P----GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------V 572 (718)
T ss_pred ceEEEEeeEEEe-C----CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------e
Confidence 469999999983 1 2346999999999999999999999999999999999999774 899998763 3
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
.++|++|+. ++.+++.++..+......+ .. ..+++.++++.+|+. +..++++..|||||||||+||++|+.+
T Consensus 573 ~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 573 RMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred eEEEEeccc--cccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 589999985 3445666664332111111 11 134578899999997 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE-EecChhhHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV-YFGPATAAN 268 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv-~~g~~~~~~ 268 (449)
|++|||||||+|||+.++..+++.|+++ + | |||++|||+ ..+..+||++++|++|+++ +.|+.++..
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~-g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLF----Q-G-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc----C-C-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999999999999999998888764 2 3 999999996 5788999999999999998 778776543
No 346
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=9.4e-37 Score=280.15 Aligned_cols=159 Identities=23% Similarity=0.312 Sum_probs=134.5
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
.+.+|+|+||++++|++++|+||||||||||||+|.+ .+|+|.++|.........++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCcccccccccEEEEhH------------
Confidence 4579999999999999999999999999999999963 279999988732222234778776
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhC--CCEEEEeCCCCCCCHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTR--PKLLFLDEPTSGLDSAA 211 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~--P~llllDEPtsgLD~~~ 211 (449)
.++++.++|.. ..+++++.||||||||++||+||+.+ |+++||||||+|||+.+
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -----------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 23577788875 48999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 212 SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 212 ~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
+..+.+.|+++++ .|. |||++||++. .+ ..||++++|.+|+...
T Consensus 125 ~~~l~~~l~~~~~-~g~--tvIivSH~~~-~~-~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 125 INQLLEVIKGLID-LGN--TVILIEHNLD-VL-SSADWIIDFGPGSGKS 168 (176)
T ss_pred HHHHHHHHHHHHh-CCC--EEEEEeCCHH-HH-HhCCEEEEECCCCCCC
Confidence 9999999999974 455 9999999974 44 6899999997755433
No 347
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.3e-37 Score=274.70 Aligned_cols=224 Identities=24% Similarity=0.385 Sum_probs=194.4
Q ss_pred eEEEEeeEEEEeecC---cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc--
Q 044030 37 FLTWKDLTVTIVSNG---KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~---~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-- 111 (449)
.++++|+++++.+.. .+....+++.|||++++|+.+||+|.||||||||.|+|+|..+| ++|+|.+||++..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P---TsG~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC---CCceEEECCcccccc
Confidence 368899998842211 12346799999999999999999999999999999999999987 5999999998753
Q ss_pred ---cccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-chhhCccCCCCChHHHHHH
Q 044030 112 ---LAYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL-QDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 112 ---~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~~~LSgGerqRv 185 (449)
.+.++|-++|||++ +.|.+.+.+-+....++ ...+....+.+++.+.|..+|| .+.++-++..||-||||||
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 23467999999974 67888888888776554 3456677788899999999998 5788999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
++||||+.+|+++|.||..++||...+.+++++.-++.++.|. +-|.++.+. .-+.+++|+|+||++|++++.|++.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~Gi--SyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~t~ 235 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI--SYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTA 235 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCc--eEEEEechh-hHhhhhcccEEEEecCceeecCChh
Confidence 9999999999999999999999999999999999999988876 999999996 5799999999999999999999998
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 236 ~v~ 238 (267)
T COG4167 236 DVL 238 (267)
T ss_pred hhh
Confidence 763
No 348
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.1e-36 Score=356.64 Aligned_cols=208 Identities=22% Similarity=0.298 Sum_probs=174.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| .. +...+|+||||+|++||.+||+|+||||||||+++|+|+++ .+|+|.+||.++..
T Consensus 1216 g~I~f~nVs~~Y-~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~ 1287 (1490)
T TIGR01271 1216 GQMDVQGLTAKY-TE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTL 1287 (1490)
T ss_pred CeEEEEEEEEEe-CC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCH
Confidence 369999999994 21 34679999999999999999999999999999999999974 38999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-------hCccC----CCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-------MNTRI----RRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~----~~LSg 179 (449)
.+++++||||++.+|+. |++|||.... ..+ ++.+.++++..+|.+. +|+.+ .+|||
T Consensus 1288 ~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSg 1356 (1490)
T TIGR01271 1288 QTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSN 1356 (1490)
T ss_pred HHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCH
Confidence 24679999999999998 9999995421 112 3456677777777543 23333 47999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|||+++|+++ ....||+|++|++|+++
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~----~~TvI~IaHRl~--ti~~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS----NCTVILSEHRVE--ALLECQQFLVIEGSSVK 1430 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC----CCEEEEEecCHH--HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998753 349999999973 45569999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
..|+++++.
T Consensus 1431 E~g~p~~Ll 1439 (1490)
T TIGR01271 1431 QYDSIQKLL 1439 (1490)
T ss_pred EeCCHHHHH
Confidence 999998875
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.7e-36 Score=278.74 Aligned_cols=154 Identities=27% Similarity=0.393 Sum_probs=134.2
Q ss_pred EeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEE
Q 044030 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYV 120 (449)
Q Consensus 41 ~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv 120 (449)
.||++.| +++.+++++ +++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+ ++|+
T Consensus 4 ~~l~~~~------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~~ 66 (177)
T cd03222 4 PDCVKRY------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVYK 66 (177)
T ss_pred CCeEEEE------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEEE
Confidence 5777772 456789985 999999999999999999999999999999774 8999999863 7888
Q ss_pred cCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 044030 121 TQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFL 200 (449)
Q Consensus 121 ~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llll 200 (449)
+|+.. ||||||||++||++|+.+|++++|
T Consensus 67 ~q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 67 PQYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred cccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88532 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe--cChh
Q 044030 201 DEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF--GPAT 265 (449)
Q Consensus 201 DEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~--g~~~ 265 (449)
||||+|||+.++..+.+.|++++++.+. |||++||++ ..+..+||++++|+++-.++. |.|.
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~--tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKK--TALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCC--EEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999999999999999755334 999999996 578889999999998766654 5554
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.7e-36 Score=328.49 Aligned_cols=206 Identities=23% Similarity=0.328 Sum_probs=164.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
+|+++||+++| +++.+|+||||+|++|+++||+||||||||||||+|+|+.+|+ +|+|.++|.. .
T Consensus 3 ~l~i~~ls~~~------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~------~ 67 (635)
T PRK11147 3 LISIHGAWLSF------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL------I 67 (635)
T ss_pred EEEEeeEEEEe------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC------E
Confidence 58999999983 4567999999999999999999999999999999999998774 8999998731 2
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHH------------------------------hccCC-CCCCHHHHHHHHHHHHHHcC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSA------------------------------QLQLP-DTMPKSDKKERAEVTIREMG 165 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~------------------------------~~~~~-~~~~~~~~~~~v~~~l~~lg 165 (449)
++|++|.+......+|.+++..+. .+... ........+.++.++++.+|
T Consensus 68 ~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred EEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 678887654333346665542110 00000 00001123456889999999
Q ss_pred CchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 166 L~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
+. .++++.+|||||||||+||++|+.+|+||||||||++||+.++..+.+.|+++. . |||++|||+ ..+..
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~----~--tvlivsHd~-~~l~~ 218 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ----G--SIIFISHDR-SFIRN 218 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC----C--EEEEEeCCH-HHHHH
Confidence 97 388999999999999999999999999999999999999999999999998872 2 999999996 57889
Q ss_pred hcCeEEEeeCCeEE-EecChhh
Q 044030 246 LFHNLCLLSAGQTV-YFGPATA 266 (449)
Q Consensus 246 ~~D~v~~l~~G~iv-~~g~~~~ 266 (449)
+||++++|++|+++ +.|+.++
T Consensus 219 ~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 219 MATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred hcCeEEEEECCEEEEecCCHHH
Confidence 99999999999997 4577654
No 351
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3e-36 Score=328.88 Aligned_cols=193 Identities=21% Similarity=0.339 Sum_probs=160.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.++++||++. +. +++.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.+++ ++.
T Consensus 451 ~i~~~nv~~~-~~----~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~~ 516 (659)
T TIGR00954 451 GIKFENIPLV-TP----NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KGK 516 (659)
T ss_pred eEEEEeeEEE-CC----CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CCc
Confidence 5899999997 32 2357999999999999999999999999999999999998764 89998865 346
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC---------CCCChHHHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI---------RRLSGGQKRRVSI 187 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~---------~~LSgGerqRv~i 187 (449)
++||+|++.+++. |++||+.++...... ......++++.++++.+++.+..+++. ..||||||||++|
T Consensus 517 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~i 593 (659)
T TIGR00954 517 LFYVPQRPYMTLG-TLRDQIIYPDSSEDM--KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAM 593 (659)
T ss_pred EEEECCCCCCCCc-CHHHHHhcCCChhhh--hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHH
Confidence 9999999998887 999999875422100 000112345778899999987766643 7899999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
||||+++|+++||||||+|||+.++..+.+.+++ .|. |+|++||+++ ..+.||++++|+
T Consensus 594 ARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~--tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 594 ARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGI--TLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCC--EEEEEeCchH--HHHhCCEEEEEe
Confidence 9999999999999999999999999999998865 244 9999999974 457899999997
No 352
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=305.39 Aligned_cols=215 Identities=27% Similarity=0.416 Sum_probs=177.8
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL- 112 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~- 112 (449)
..-.++++||++.| . .++++|+||||++.||+.+|++|||||||||++++|..+... .+|.|.+||+++..
T Consensus 534 ~~G~i~fsnvtF~Y-~----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv---~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAY-D----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV---NSGSITIDGQDIRNV 605 (790)
T ss_pred cCCeEEEEEeEEec-C----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc---cCceEEEcCchHHHH
Confidence 34579999999994 3 467899999999999999999999999999999999998865 49999999998642
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHH--HHHHHHHH-HHcCCchhhCccCC----CCChHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDK--KERAEVTI-REMGLQDAMNTRIR----RLSGGQ 181 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~--~~~v~~~l-~~lgL~~~~~~~~~----~LSgGe 181 (449)
.++.||.||||..+|.+ |+..|+.|+..- .+.++. .+++..+- ..+++.+..+++++ .|||||
T Consensus 606 t~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~-----AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGE 679 (790)
T KOG0056|consen 606 TQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPS-----ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGE 679 (790)
T ss_pred HHHHHHHhcCcccCcceeecc-eeeeheeecCCC-----CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcc
Confidence 24679999999999987 999999886421 122222 12222222 33567776777764 699999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+|||+++++|.+++|||.||+||..+.+.|...|.+++. ++|-|++.|..+ .+ -.+|.|+++++|+|++.
T Consensus 680 KQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca----~RTtIVvAHRLS-Ti-vnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 680 KQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA----NRTTIVVAHRLS-TI-VNADLILVISNGRIVER 753 (790)
T ss_pred hhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc----CCceEEEeeeeh-he-ecccEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999999994 449999999975 34 46899999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|.-+++.
T Consensus 754 G~HeeLl 760 (790)
T KOG0056|consen 754 GRHEELL 760 (790)
T ss_pred CcHHHHH
Confidence 9988765
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-35 Score=345.70 Aligned_cols=201 Identities=27% Similarity=0.409 Sum_probs=165.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEecccccC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT-GKILINGHKKALAYG 115 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~-G~I~~~g~~~~~~~~ 115 (449)
.++++|+++.| .. ..++.+|+|+|++|++|+.++|+||+|||||||+++|+|.+++ .+ |+|.+.|
T Consensus 614 ~I~~~nvsf~y-~~--~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~---~~GG~I~l~~-------- 679 (1622)
T PLN03130 614 AISIKNGYFSW-DS--KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP---RSDASVVIRG-------- 679 (1622)
T ss_pred ceEEEeeEEEc-cC--CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc---CCCceEEEcC--------
Confidence 58999999983 21 1235799999999999999999999999999999999999977 48 8998643
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-------Cc----cCCCCChHHHHH
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-------NT----RIRRLSGGQKRR 184 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~----~~~~LSgGerqR 184 (449)
.++||+|++.+++. |++|||.|+... + +++.+++++..+|.+.. ++ +..+||||||||
T Consensus 680 ~Iayv~Q~p~Lfng-TIreNI~fg~~~------d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQR 748 (1622)
T PLN03130 680 TVAYVPQVSWIFNA-TVRDNILFGSPF------D----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQR 748 (1622)
T ss_pred eEEEEcCccccCCC-CHHHHHhCCCcc------c----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHH
Confidence 58999999999986 999999987421 1 23455556655554322 33 335799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMS-RIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
++||||++.+|+++|||||||+||+.+..++++ .++.+. + |+|+|++||++ .....||+|++|++|+++..|+
T Consensus 749 IaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~---~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 749 VSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-R---GKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-c---CCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999999999999999999998875 566554 2 45999999997 3577899999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
.+++.
T Consensus 823 ~~eL~ 827 (1622)
T PLN03130 823 YEELS 827 (1622)
T ss_pred HHHHH
Confidence 88775
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.3e-35 Score=342.93 Aligned_cols=202 Identities=27% Similarity=0.381 Sum_probs=162.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.++++|+++.| .. ..++++|+|+||++++||.++|+||+|||||||+++|+|.++|. +|.+.. .++.
T Consensus 614 ~I~~~~vsF~y-~~--~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~~-------~~~~ 680 (1495)
T PLN03232 614 AISIKNGYFSW-DS--KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSVV-------IRGS 680 (1495)
T ss_pred cEEEEeeEEEc-CC--CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEEE-------ecCc
Confidence 58999999983 21 12357999999999999999999999999999999999999774 665521 1346
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-------Ccc----CCCCChHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-------NTR----IRRLSGGQKRRV 185 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----~~~LSgGerqRv 185 (449)
++||+|++.+++. |++|||.|+.. .+. ++.+++++..+|.+.. ++. ..+||||||||+
T Consensus 681 Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 749 (1495)
T PLN03232 681 VAYVPQVSWIFNA-TVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRV 749 (1495)
T ss_pred EEEEcCccccccc-cHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHH
Confidence 9999999999987 99999998742 122 3345555555553322 233 357999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSR-IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~-l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+||||++.+|+|++||||||+||+.++.++++. ++... . ++|+|++||++. ....||+|++|++|+++..|+.
T Consensus 750 aLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~--~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 750 SMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--K--GKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTF 823 (1495)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--c--CCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCH
Confidence 999999999999999999999999999988765 55443 2 459999999973 5678999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 824 ~eL~ 827 (1495)
T PLN03232 824 AELS 827 (1495)
T ss_pred HHHH
Confidence 8765
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-34 Score=340.08 Aligned_cols=206 Identities=22% Similarity=0.351 Sum_probs=165.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.++++|+++.| .. ..+.+|+|+|+++++|++++|+||||||||||+++|+|.++| .+|+|.++| .
T Consensus 636 ~i~~~~~~~~~-~~---~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~---~~G~i~~~g--------~ 700 (1522)
T TIGR00957 636 SITVHNATFTW-AR---DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVHMKG--------S 700 (1522)
T ss_pred cEEEEEeEEEc-CC---CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc---CCcEEEECC--------E
Confidence 68999999983 21 235799999999999999999999999999999999999977 489999987 3
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHH--HHHHHc-----CCchhhCccCCCCChHHHHHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAE--VTIREM-----GLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~l-----gL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
++||+|++.+++ .|++||+.|+... +.+..++.++ ++.+.+ |.+...+.++.+||||||||++|||
T Consensus 701 i~yv~Q~~~l~~-~Ti~eNI~~g~~~------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLAR 773 (1522)
T TIGR00957 701 VAYVPQQAWIQN-DSLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 773 (1522)
T ss_pred EEEEcCCccccC-CcHHHHhhcCCcc------CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHH
Confidence 899999998875 5999999886421 1222211111 112222 2223445667899999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ-RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|++.+|++++||||||+||+.++..+++.+.+... .. ++|+|++||++. . ...||+|++|++|+++..|+.+++.
T Consensus 774 Al~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~--~~tvIlvTH~~~-~-l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK--NKTRILVTHGIS-Y-LPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhc--CCEEEEEeCChh-h-hhhCCEEEEecCCeEEeeCCHHHHH
Confidence 99999999999999999999999999999975321 22 349999999974 3 4569999999999999999988765
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-34 Score=260.75 Aligned_cols=151 Identities=38% Similarity=0.621 Sum_probs=133.5
Q ss_pred EEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----cc
Q 044030 40 WKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AY 114 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~ 114 (449)
++|+++.| .++.+++++|+++++|++++|+||||||||||+++|+|.+++. +|+|+++|.+... ..
T Consensus 2 ~~~~~~~~------~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRY------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEe------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHH
Confidence 57888873 2347999999999999999999999999999999999998764 8999999986432 12
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++| |||||+||++||++++.+
T Consensus 73 ~~i~~~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 73 RRIGYVPQ------------------------------------------------------LSGGQRQRVALARALLLN 98 (157)
T ss_pred hceEEEee------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 45888888 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|++++|||||+|||+.++..+.+.|+++++. +. |+|++||++ .++...||++++|++|+
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~--tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEE-GR--TVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999998754 45 999999996 57888899999999875
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.3e-35 Score=316.06 Aligned_cols=180 Identities=27% Similarity=0.386 Sum_probs=154.1
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeccc-------ccCcE
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL-----------INGHKKAL-------AYGTS 117 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~-----------~~g~~~~~-------~~~~i 117 (449)
..+|++++ .+++|+++||+||||||||||||+|+|+++|+ +|+|. ++|.++.. ....+
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 36999999 99999999999999999999999999999875 89997 88976421 11235
Q ss_pred EEEcCCCCCCCCC---CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 118 AYVTQDDTLITTL---TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 118 ~yv~Q~~~l~~~l---Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+|.+|....+|.+ ||.|++.+. +.+.+++++++.++|.+..++.+.+|||||||||+||+||+.+
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~ 230 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRD 230 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 6666654444433 999998531 1235688999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
|+++||||||++||+.++..+.+.|+++++ |. |||+++|++ +++..++|++++|++|
T Consensus 231 p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~--tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 231 ADFYFFDEPTSYLDIRQRLNVARLIRELAE--GK--YVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CC--EEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999974 66 999999996 5788999999999863
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=5.6e-35 Score=307.91 Aligned_cols=205 Identities=28% Similarity=0.436 Sum_probs=172.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
+|+++|+++.| +.+.+|+|+|+++.+|+.+||+|+||||||||||+|+|...|+ +|+|...+. -+
T Consensus 3 ~i~~~~ls~~~------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------~~ 67 (530)
T COG0488 3 MITLENLSLAY------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------LR 67 (530)
T ss_pred eEEEeeeEEee------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------ce
Confidence 68999999983 6789999999999999999999999999999999999999774 899987652 25
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhcc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCchh
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQ-------------LPDT--------------MPKSDKKERAEVTIREMGLQDA 169 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~ 169 (449)
++|++|++.+.+..||.+.+.-+..-. ++.. ....+.+.++..++..+|+.+.
T Consensus 68 v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 68 VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred EEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 899999999999999999886543210 0000 0001123567888999999877
Q ss_pred hCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 170 MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 170 ~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
++++.+||||||+||+||++|+.+|++|||||||+.||..+..-+-+.|+++. | |+|+|||| +..+-+.|++
T Consensus 148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-----g-tviiVSHD-R~FLd~V~t~ 219 (530)
T COG0488 148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-----G-TVIVVSHD-RYFLDNVATH 219 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-----C-cEEEEeCC-HHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999998763 5 99999999 6889999999
Q ss_pred EEEeeCCeEEE-ecCh
Q 044030 250 LCLLSAGQTVY-FGPA 264 (449)
Q Consensus 250 v~~l~~G~iv~-~g~~ 264 (449)
|+-++.|++.. .|.-
T Consensus 220 I~~ld~g~l~~y~Gny 235 (530)
T COG0488 220 ILELDRGKLTPYKGNY 235 (530)
T ss_pred eEEecCCceeEecCCH
Confidence 99999998754 4543
No 359
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-35 Score=265.13 Aligned_cols=187 Identities=27% Similarity=0.416 Sum_probs=162.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY-- 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~-- 114 (449)
.++.+|++.. ++.+.++.++||++.+||++-|.|||||||||||++|+|+..|+ +|+|.++|.++....
T Consensus 2 ~L~a~~L~~~------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 2 MLEAENLSCE------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72 (209)
T ss_pred cchhhhhhhc------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhh
Confidence 4567788876 26789999999999999999999999999999999999999885 999999998764322
Q ss_pred --CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 115 --GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 115 --~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
+.+-|+--.+.+=+.|||+|||.|...+... .....+.+.++.+||....|.+++.||-||||||+|||-++
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~l 146 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWL 146 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHc
Confidence 3466887888888999999999998876532 12345788999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
+.+++.||||||++||......+-.++..-+.+ |- .||.+||||..
T Consensus 147 s~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~-GG--iVllttHq~l~ 192 (209)
T COG4133 147 SPAPLWILDEPFTALDKEGVALLTALMAAHAAQ-GG--IVLLTTHQPLP 192 (209)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHHHhcC-CC--EEEEecCCccC
Confidence 999999999999999999999999999988754 43 89999999853
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-35 Score=261.42 Aligned_cols=213 Identities=27% Similarity=0.422 Sum_probs=172.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eccc-
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKAL- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~---~~~~- 112 (449)
.+++.++|+.| +...-.+||||++.|||+++|+|.|||||||||+||++++.|+ +|+|.+.-. +.+.
T Consensus 6 LL~V~~lsk~Y------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 6 LLSVSGLSKLY------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLY 76 (258)
T ss_pred ceeehhhhhhh------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHh
Confidence 57899999873 5566889999999999999999999999999999999999885 899988643 2110
Q ss_pred ----------ccCcEEEEcCCCCC--CCCCC----HHHHHH-HHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccC
Q 044030 113 ----------AYGTSAYVTQDDTL--ITTLT----VKEAVY-YSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRI 174 (449)
Q Consensus 113 ----------~~~~i~yv~Q~~~l--~~~lT----v~e~l~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~ 174 (449)
.+...|+|.|++.- -...+ +.|-++ .+.+-+ ...++.+.+|++.+.++ ...|..+
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY-------G~iR~~a~~WL~~VEI~~~RiDD~P 149 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY-------GNIRAEAQDWLEEVEIDLDRIDDLP 149 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh-------hhHHHHHHHHHHhcccCcccccCcc
Confidence 11246999999743 22222 223322 222211 23456688999999986 4568889
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
+.+||||+||+.|||-|+..|+++|+||||.|||...+..++++++.+..+.|. +++++|||. .-+--++|+.++|+
T Consensus 150 rtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~l--a~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL--AVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCc--eEEEEechh-HHHHHhhhcceeec
Confidence 999999999999999999999999999999999999999999999999988876 999999996 45666799999999
Q ss_pred CCeEEEecChhhHH
Q 044030 255 AGQTVYFGPATAAN 268 (449)
Q Consensus 255 ~G~iv~~g~~~~~~ 268 (449)
+|+++..|-.+.+.
T Consensus 227 ~g~vve~GLTDrvL 240 (258)
T COG4107 227 QGQVVESGLTDRVL 240 (258)
T ss_pred CCCEeccccccccc
Confidence 99999999877653
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.8e-34 Score=336.44 Aligned_cols=189 Identities=23% Similarity=0.389 Sum_probs=154.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
+.+|+|+|++|++|++++|+|||||||||||++|+|..+|. +|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 46999999999999999999999999999999999999874 89999998 38999999999886 99999
Q ss_pred HHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCC--chhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044030 136 VYYSAQLQLPDTMPKSDKKE-----RAEVTIREMGL--QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL--~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD 208 (449)
+.|+... .....++ ..++.++.+.. ......++..|||||||||+||||++.+|+++||||||+|||
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD 580 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 9987431 1111111 12223333321 223455678999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 209 SAASYYVMSR-IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 209 ~~~~~~i~~~-l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.++..+++. +..+. + |+|+|++||++. .+ ..||++++|++|+++..|+.+++.
T Consensus 581 ~~~~~~i~~~~l~~~~-~---~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 581 VVTEKEIFESCLCKLM-S---NKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHHHHh-c---CCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999984 66665 2 449999999974 44 569999999999999999988765
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6e-34 Score=311.76 Aligned_cols=218 Identities=19% Similarity=0.251 Sum_probs=155.6
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec----
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK---- 110 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~---- 110 (449)
...|+++|++++| +++.+|+|+||+|++|+++||+|||||||||||++|+|....+.+.+|+|.+.++..
T Consensus 175 ~~~I~i~nls~~y------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 175 IKDIHMENFSISV------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred ceeEEEceEEEEe------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 4569999999983 345699999999999999999999999999999999996411123467775433211
Q ss_pred -cc-------c-------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC---------------CCCHHHHHHHHHHH
Q 044030 111 -AL-------A-------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD---------------TMPKSDKKERAEVT 160 (449)
Q Consensus 111 -~~-------~-------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~---------------~~~~~~~~~~v~~~ 160 (449)
.. . ...++|++|++.+... ++.++.........+. .......+.++.++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~ 327 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASI 327 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 00 0 0113444443322111 1111100000000000 00011234567788
Q ss_pred HHHcCCc-hhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 161 IREMGLQ-DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 161 l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
++.+|+. +..++++.+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +. |||++||+.
T Consensus 328 L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~--tviivsHd~ 401 (718)
T PLN03073 328 LAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PK--TFIVVSHAR 401 (718)
T ss_pred HHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CC--EEEEEECCH
Confidence 8889996 5678999999999999999999999999999999999999999999999999876 33 999999995
Q ss_pred cHHHHhhcCeEEEeeCCeEE-EecChhh
Q 044030 240 SSEVFQLFHNLCLLSAGQTV-YFGPATA 266 (449)
Q Consensus 240 ~~~i~~~~D~v~~l~~G~iv-~~g~~~~ 266 (449)
..+..+||++++|++|+++ |.|+.+.
T Consensus 402 -~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 402 -EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred -HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 5788899999999999996 6776543
No 363
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-34 Score=285.74 Aligned_cols=211 Identities=26% Similarity=0.371 Sum_probs=173.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.+.|.|+++.|- +.+++|+++||++++|+.+||+||+|+||||++++|...+.+. +|.|.+||+++..
T Consensus 262 ~v~F~~V~F~y~-----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~ 333 (497)
T COG5265 262 AVAFINVSFAYD-----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQ 333 (497)
T ss_pred eEEEEEEEeecc-----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHH
Confidence 478999999832 5678999999999999999999999999999999999999774 9999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCchhhCccC----CCCChHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREMGLQDAMNTRI----RRLSGGQK 182 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~~----~~LSgGer 182 (449)
.++.||.||||..||.+ |...|+.++.. ..+.++..+ .+...++. +.+..++.+ -.||||||
T Consensus 334 slR~aIg~VPQDtvLFND-ti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~~--lP~gy~t~VgerglklSggek 405 (497)
T COG5265 334 SLRRAIGIVPQDTVLFND-TIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGERGLKLSGGEK 405 (497)
T ss_pred HHHHHhCcCcccceehhh-hHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHHh--CchhhhcccchheeeccCchH
Confidence 24679999999999987 99999988642 122222221 22222332 344555555 47999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+|||+++++|++++|||.||+||..+.+.|...|+++++ |+|-+++.|.++ .+ --+|.|++|++|+|++.|
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~----~rttlviahrls-ti-~~adeiivl~~g~i~erg 479 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA----GRTTLVIAHRLS-TI-IDADEIIVLDNGRIVERG 479 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC----CCeEEEEeehhh-hc-cCCceEEEeeCCEEEecC
Confidence 999999999999999999999999999999999999999983 449999999975 34 458999999999999999
Q ss_pred ChhhHHH
Q 044030 263 PATAANE 269 (449)
Q Consensus 263 ~~~~~~~ 269 (449)
.-+++..
T Consensus 480 ~h~~ll~ 486 (497)
T COG5265 480 THEELLA 486 (497)
T ss_pred cHHHHHH
Confidence 9877653
No 364
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.8e-33 Score=330.04 Aligned_cols=191 Identities=24% Similarity=0.386 Sum_probs=157.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
++.+|+|+||+|++|++++|+|||||||||||++|+|.++|. +|+|.++ +.++|++|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCCCccCC-CcHHH
Confidence 456999999999999999999999999999999999999774 8999874 35999999998875 59999
Q ss_pred HHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 044030 135 AVYYSAQLQLPDTMPKSDKK-----ERAEVTIREM--GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgL 207 (449)
|+.|+... ..+... ..+++.++.+ |+....++++.+|||||||||+|||||+.+|+++||||||++|
T Consensus 740 nI~~~~~~------~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saL 813 (1560)
T PTZ00243 740 NILFFDEE------DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSAL 813 (1560)
T ss_pred HHHcCChh------hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 99885321 111111 1234456666 7777778889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.++..+++.+.... ..| +|+|++||++. . ...||+|++|++|++++.|+.+++.
T Consensus 814 D~~~~~~i~~~~~~~~-~~~--~TvIlvTH~~~-~-~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 814 DAHVGERVVEECFLGA-LAG--KTRVLATHQVH-V-VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred CHHHHHHHHHHHHHHh-hCC--CEEEEEeCCHH-H-HHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999887543222 124 49999999973 3 4689999999999999999988764
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=6.2e-33 Score=265.25 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=137.2
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--Eecc---cccCc
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLL-DALAGRLGSDTRQTGKILIN-----------G--HKKA---LAYGT 116 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL-~~l~G~~~~~~~~~G~I~~~-----------g--~~~~---~~~~~ 116 (449)
.+..+|+||||++++||++||+||||||||||+ ..|.. .|++.+. | .... .....
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLS 77 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCC
Confidence 345799999999999999999999999999995 44432 1221110 0 0000 01112
Q ss_pred EEEEcCCCC--CCCCCCHHH---HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHH
Q 044030 117 SAYVTQDDT--LITTLTVKE---AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 117 i~yv~Q~~~--l~~~lTv~e---~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++..|++. +.+..+|.. ...+...+. ......++ .++++.+++.+ ..++++.+|||||||||+||+|
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~lara 151 (226)
T cd03270 78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQ 151 (226)
T ss_pred ceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHH
Confidence 344444432 244456542 222221111 11112233 46899999986 5899999999999999999999
Q ss_pred HHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEec
Q 044030 191 ILTRP--KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFG 262 (449)
Q Consensus 191 L~~~P--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g 262 (449)
|+.+| +++||||||+|||+.++..+.+.|+++++ .|. |||++||++. ++ .+||++++| ++|+++++|
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~--tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGN--TVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCC--EEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99998 59999999999999999999999999974 455 9999999974 44 699999999 999999876
No 366
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-33 Score=248.77 Aligned_cols=209 Identities=24% Similarity=0.335 Sum_probs=172.9
Q ss_pred eEEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE--ecc--
Q 044030 37 FLTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH--KKA-- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~--~~~-- 111 (449)
.|.++|+++++.-+...| .-++|+|+||+++.||++++-|||||||||||++|-|.+.|+ +|+|++.-. -++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhh
Confidence 578899998853322222 247999999999999999999999999999999999999875 999998532 111
Q ss_pred ---------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHH
Q 044030 112 ---------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQ 181 (449)
Q Consensus 112 ---------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGe 181 (449)
.+++.+|||.|.-...|.....|-++-.+.-+ +.+.+..+.++..++.+|++. ...+-.+..+||||
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE 157 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE 157 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence 12356899999988888888777776554332 567777888999999999996 46788899999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+|||.|||.++.+-+||+|||||+.||..++..++++|++-+ ..|. .+|=+-|| .+--...+||++-+..
T Consensus 158 qQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K-a~Ga--AlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 158 QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK-ARGA--ALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred heehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH-hcCc--eEEEeecc-HHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999976 4454 99999999 4445668999998864
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.5e-32 Score=306.22 Aligned_cols=206 Identities=26% Similarity=0.416 Sum_probs=172.5
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
.....++++|.+++ .. + .+..+.|+||||+|++|+.+||+||-|||||+||.+|.|..+. .+|+|.++|.
T Consensus 514 ~~~~~i~i~~~sfs-W~-~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs---- 583 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFS-WD-S-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS---- 583 (1381)
T ss_pred CCCceEEEeeeeEe-cC-C-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe----
Confidence 33456899999998 32 1 2345599999999999999999999999999999999999865 5999999985
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC-----------CCCChHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----------RRLSGGQ 181 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----------~~LSgGe 181 (449)
++||+|++.++.. ||+|||.|+..+ .+++.+++++...|++..+..+ -+|||||
T Consensus 584 ----iaYv~Q~pWI~ng-TvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQ 648 (1381)
T KOG0054|consen 584 ----VAYVPQQPWIQNG-TVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQ 648 (1381)
T ss_pred ----EEEeccccHhhCC-cHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhH
Confidence 8999999999887 999999998643 2345566666666654444333 5899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||+++|||+.++.++++||.|+|++|++...+|.+..-.-. -. ++|+|++||+. +..+.+|.|++|++|+|...
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~--~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LR--GKTVILVTHQL--QFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hc--CCEEEEEeCch--hhhhhCCEEEEecCCeEecc
Confidence 999999999999999999999999999999999887665332 22 45999999985 57889999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|+.+++.
T Consensus 724 Gty~el~ 730 (1381)
T KOG0054|consen 724 GTYEELL 730 (1381)
T ss_pred cCHHHHH
Confidence 9999887
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=1.1e-31 Score=260.79 Aligned_cols=195 Identities=25% Similarity=0.334 Sum_probs=152.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH-----cCCC-----CC--------CCceeEEEECCEeccccc---
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA-----GRLG-----SD--------TRQTGKILINGHKKALAY--- 114 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~-----G~~~-----~~--------~~~~G~I~~~g~~~~~~~--- 114 (449)
..-|+|||.+|+.|.+++|.|+||||||||++.+. ..+. |. ....--|.++..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34799999999999999999999999999998662 1100 10 001113566665431100
Q ss_pred ------------------------C----cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC
Q 044030 115 ------------------------G----TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166 (449)
Q Consensus 115 ------------------------~----~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 166 (449)
+ .+.|..++...+..|||.|++.|...+. ...++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 0 1345566666678899999999876542 12356789999999
Q ss_pred ch-hhCccCCCCChHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 167 QD-AMNTRIRRLSGGQKRRVSISIEILTR---PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 167 ~~-~~~~~~~~LSgGerqRv~ia~aL~~~---P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
.+ .+++++..|||||+||++||++|+.+ |++++|||||+|||+..+..+++.|+++++ .|. |||+++|++. .
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~--tvIiitH~~~-~ 234 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGN--TVVVIEHNLD-V 234 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCHH-H
Confidence 87 58999999999999999999999996 799999999999999999999999999984 455 9999999973 4
Q ss_pred HHhhcCeEEEe------eCCeEEEecCh
Q 044030 243 VFQLFHNLCLL------SAGQTVYFGPA 264 (449)
Q Consensus 243 i~~~~D~v~~l------~~G~iv~~g~~ 264 (449)
+ ..||+++.| ++|++++.|++
T Consensus 235 i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 235 I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 679999999 89999999874
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=1.8e-31 Score=281.36 Aligned_cols=203 Identities=26% Similarity=0.397 Sum_probs=170.7
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
.+..++++|+++.| . +++.+++++||.|.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y-~----~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~----- 384 (530)
T COG0488 318 GKLVLEFENVSKGY-D----GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET----- 384 (530)
T ss_pred CCeeEEEecccccc-C----CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc-----
Confidence 35679999999983 1 3378999999999999999999999999999999999988774 899987532
Q ss_pred cCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHH
Q 044030 114 YGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 114 ~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
-.+||..|+. .+.+..|+.|++.-... ...+..+...|..|++. +...++++.||||||.|+.+|+.+
T Consensus 385 -v~igyf~Q~~~~l~~~~t~~d~l~~~~~---------~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll 454 (530)
T COG0488 385 -VKIGYFDQHRDELDPDKTVLEELSEGFP---------DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL 454 (530)
T ss_pred -eEEEEEEehhhhcCccCcHHHHHHhhCc---------cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHh
Confidence 2589999996 44578899999854321 11145688899999996 566899999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe-cChhhH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF-GPATAA 267 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~-g~~~~~ 267 (449)
+.+|.+|||||||+.||..+...+.+.|..+. | |||+|||| ...+..+|++++++.+ ++..+ |.-++.
T Consensus 455 ~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-----G-tvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 455 LQPPNLLLLDEPTNHLDIESLEALEEALLDFE-----G-TVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred ccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-----C-eEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999999999999999999999999874 3 99999999 5789999999999998 55444 655443
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=1.6e-31 Score=301.79 Aligned_cols=239 Identities=21% Similarity=0.281 Sum_probs=184.5
Q ss_pred CcchhchhhhhhcccccccccccccCC--CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHH
Q 044030 6 DSITETNEALEMESSNKTANSLINVNE--DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKT 83 (449)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKS 83 (449)
.++.+..+..+++++.....+....|. +..-.|+++|+++.| . ++...+|+||||+|+|||.+||+|..|||||
T Consensus 1105 ~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RY-r---p~lp~VLk~is~~I~p~eKVGIVGRTGaGKS 1180 (1381)
T KOG0054|consen 1105 VSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRY-R---PNLPLVLKGISFTIKPGEKVGIVGRTGAGKS 1180 (1381)
T ss_pred hhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEe-C---CCCcchhcCceEEEcCCceEEEeCCCCCCHH
Confidence 445566666665554212111111111 224579999999994 3 2456899999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHH
Q 044030 84 TLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAE 158 (449)
Q Consensus 84 TLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~ 158 (449)
||+++|-.+..| .+|+|.+||.++.. -+++++.+||||.+|.. |+|.||.=.. ..+++ .+-
T Consensus 1181 SL~~aLFRl~e~---~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~------e~sD~----~IW 1246 (1381)
T KOG0054|consen 1181 SLILALFRLVEP---AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD------EYSDD----EIW 1246 (1381)
T ss_pred HHHHHHHHhcCc---cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc------ccCHH----HHH
Confidence 999999999876 48999999998642 24679999999999999 9999985321 12222 334
Q ss_pred HHHHHcCCchh-------hCccC----CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 044030 159 VTIREMGLQDA-------MNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227 (449)
Q Consensus 159 ~~l~~lgL~~~-------~~~~~----~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g 227 (449)
+.|+..+|.+. +|..+ .++|-||||-+++||||+++++||+|||.|++.|+.+-..|-+.|++--+
T Consensus 1247 ~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--- 1323 (1381)
T KOG0054|consen 1247 EALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK--- 1323 (1381)
T ss_pred HHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc---
Confidence 44444444332 33333 68999999999999999999999999999999999999999999998653
Q ss_pred CCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 228 IGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 228 ~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.|||.+.|... .+. -+|||+||++|+++++|+|.++.
T Consensus 1324 -dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1324 -DCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred -CCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHHH
Confidence 449999999985 454 48999999999999999998876
No 371
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.98 E-value=2.7e-32 Score=239.76 Aligned_cols=128 Identities=45% Similarity=0.756 Sum_probs=114.9
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCCCHH
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
|+|||+++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc---cccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999999999999999877 49999999998643 235799999999999999999
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC----CCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~----~~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
|+ ...++++++++.+++.+..++.+ ..|||||||||+||+||+.+|++++|||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 12345888999999887777777 9999999999999999999999999999996
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=3.1e-31 Score=248.27 Aligned_cols=165 Identities=21% Similarity=0.318 Sum_probs=132.5
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEeccc--ccCcEEEEcCCCCCCCCCC
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD------TRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~------~~~~G~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lT 131 (449)
+++++++++| +++|+||||||||||+++|+|+.++. ....|++.++|.+... ..+.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7789999999 99999999999999999999987542 1123567777765422 235799999998766
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCC
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGL 207 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgL 207 (449)
|.. . ..++++++++. .+..++++..||||||||++||++++ .+|++++|||||+||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 110 0 02346666666 55678899999999999999999997 466999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|+..+..+.+.|+++++ +. |||++||++. . ...||+++.+..
T Consensus 149 D~~~~~~l~~~l~~~~~--~~--tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 149 DDANVERFARLLKEFSK--ET--QFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred CHHHHHHHHHHHHHhcc--CC--EEEEEECCHH-H-HhhcceEEEEEe
Confidence 99999999999999973 34 9999999973 4 578999999974
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=4.5e-32 Score=241.44 Aligned_cols=206 Identities=27% Similarity=0.439 Sum_probs=177.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.+.++||.+. +-|-.+|+.+..||++-++|||||||||||-.++|+.+. +|+|.++|.+...
T Consensus 3 l~qln~v~~~----------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~ 68 (248)
T COG4138 3 LMQLNDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSAT 68 (248)
T ss_pred eeeecccccc----------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHh
Confidence 4677888765 247789999999999999999999999999999999754 8999999998632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..++-+|+.|+..-...|.|+.++.+. .+.++....++++.+.++|++.+.+.+..|||||-|||-+|...
T Consensus 69 eLArhRAYLsQqq~p~f~mpV~~YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~ 140 (248)
T COG4138 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 140 (248)
T ss_pred HHHHHHHHHhhccCCcchhhhhhhhhhc--------CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEE
Confidence 124568999998877788999998653 23456667789999999999999999999999999999999887
Q ss_pred Hh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 192 LT-----RP--KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 192 ~~-----~P--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+. || ++++||||.++||......+-..|.+++. .|. +|||++||.+ ...+.+|++.+|+.|++...|..
T Consensus 141 LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~--~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~ 216 (248)
T COG4138 141 LQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGL--AIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRR 216 (248)
T ss_pred EEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCc--EEEEeccchh-hHHHHHHHHHHHhcCeEEeecch
Confidence 65 44 69999999999999999999999999995 444 9999999986 57889999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 217 ~eVl 220 (248)
T COG4138 217 EEVL 220 (248)
T ss_pred hhhc
Confidence 8764
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=5.8e-30 Score=264.40 Aligned_cols=214 Identities=25% Similarity=0.409 Sum_probs=181.6
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
....++++|++.. ..++||||++++||++||.|-=|||+|-|+++|.|..++ .+|+|.+||++....
T Consensus 260 ~~~~l~v~~l~~~----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~ 326 (500)
T COG1129 260 GEPVLEVRNLSGG----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIR 326 (500)
T ss_pred CCcEEEEecCCCC----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCC
Confidence 4556888888764 158999999999999999999999999999999997655 489999999976432
Q ss_pred ------cCcEEEEcCC---CCCCCCCCHHHHHHHHHhccCC-C-CCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHH
Q 044030 114 ------YGTSAYVTQD---DTLITTLTVKEAVYYSAQLQLP-D-TMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQ 181 (449)
Q Consensus 114 ------~~~i~yv~Q~---~~l~~~lTv~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGe 181 (449)
...++|||.| ..++..++|.+|+.++...+.. . -.+....++.++++.+.|++. ...+.++..||||.
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGN 406 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN 406 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchh
Confidence 2469999998 4689999999999888322211 1 244555667789999999996 45678999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
+|||.||+.|..+|++|||||||.|.|.-++.+|.++|++++++ | ++||++|-+. +|+..+||||++|++|+++..
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G--~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-G--KAILMISSEL-PELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-C--CEEEEEeCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999965 4 4999999996 689999999999999999875
Q ss_pred cCh
Q 044030 262 GPA 264 (449)
Q Consensus 262 g~~ 264 (449)
-+.
T Consensus 483 ~~~ 485 (500)
T COG1129 483 LDR 485 (500)
T ss_pred ecc
Confidence 443
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=1.6e-29 Score=243.82 Aligned_cols=185 Identities=17% Similarity=0.271 Sum_probs=134.4
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC----------------CCCCCCcee--------EEEECCEe
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR----------------LGSDTRQTG--------KILINGHK 109 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~----------------~~~~~~~~G--------~I~~~g~~ 109 (449)
++..++++++ |++++|+||||||||||+++|+++ +.++ +| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~ 84 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSD 84 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCC
Confidence 4567888887 789999999999999999999843 2222 33 55555531
Q ss_pred c----c---c-ccCcEEEEcCCCCCCC-CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH
Q 044030 110 K----A---L-AYGTSAYVTQDDTLIT-TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180 (449)
Q Consensus 110 ~----~---~-~~~~i~yv~Q~~~l~~-~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 180 (449)
. . . ..+.++|++|+..+++ ..|..|...+...+.......... ....++.+.+++.+..+.++..||||
T Consensus 85 ~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~--~~qg~i~~l~~l~~~~~~~~~~lS~G 162 (243)
T cd03272 85 NRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYI--VPQGKINSLTNMKQDEQQEMQQLSGG 162 (243)
T ss_pred CccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEE--EEcCchHHhhhccccccccccccCHH
Confidence 1 0 0 1245899999887776 467777666655432211100000 00112334455666678899999999
Q ss_pred HHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 181 QKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 181 erqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
||||++||++|+. +|+++++||||+|||+.++..+++.|+++++ +. +||+++|++ ++..+||++++|.
T Consensus 163 ~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~--~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 163 QKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GA--QFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CC--EEEEEecCH--HHHhhCCEEEEEE
Confidence 9999999999974 5899999999999999999999999999863 44 888888884 5789999999986
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=8.8e-31 Score=247.93 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=137.3
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-cccCcEEEEcCCCCCCCCCCH
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-LAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-~~~~~i~yv~Q~~~l~~~lTv 132 (449)
+++.+++++++ ++++|+||||||||||+++|+-. +|.+.. ...+.++|++|+..+++.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhhHHHHhcCCCCCCCCce
Confidence 56779999988 89999999999999999999732 222211 112458899999988999999
Q ss_pred HHHHHHHHhccCC-----CCCCHHHHHH--HHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh----CCCEEEEe
Q 044030 133 KEAVYYSAQLQLP-----DTMPKSDKKE--RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT----RPKLLFLD 201 (449)
Q Consensus 133 ~e~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~----~P~llllD 201 (449)
.+.+.+....... .+...+.... ...++++.++|.+..++++..||+|||||++||+|++. +|+++++|
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililD 156 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMD 156 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEc
Confidence 8887665433100 0111111110 12556677888888899999999999999999999974 47999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 202 EPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 202 EPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|||+|||+.++..+.+.|+++++ +. |+|++||++ ++.++||++++|..
T Consensus 157 EPt~gLD~~~~~~l~~~l~~~~~--~~--~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 157 EIDAALDFRNVSIVANYIKERTK--NA--QFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CCCcCCCHHHHHHHHHHHHHHcC--CC--EEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999999999999999863 23 889999984 68899999999974
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=5.7e-29 Score=241.48 Aligned_cols=177 Identities=19% Similarity=0.242 Sum_probs=138.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-ec-c------cccCcEEEEcCCC---------CCCCCCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-KK-A------LAYGTSAYVTQDD---------TLITTLT 131 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~-~~-~------~~~~~i~yv~Q~~---------~l~~~lT 131 (449)
..+++|+||||||||||+++|++++.+. ..|++.+.|. +. . .....+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 5599999999999999999999998653 2467777765 21 1 1123689999985 3456889
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc--------------------hhhCccCCCCChHHHHHHHHHHHH
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ--------------------DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
|.+++.+......... ......+++.++++.+|+. +..++++.+||||||||++||++|
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 9988865432211000 1223346788899999986 556788999999999999999999
Q ss_pred H----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 192 L----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 192 ~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
+ .+|+++++||||+|||+..+..+.+.|++++ + |. |||++||++ ++.+.||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~--~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GS--QFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CC--EEEEEECCH--HHHHhCCEEEEEE
Confidence 8 4789999999999999999999999999986 3 44 999999994 6788899998876
No 378
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.95 E-value=2.2e-27 Score=274.59 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=113.5
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHH---hCCCEEEEe
Q 044030 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEIL---TRPKLLFLD 201 (449)
Q Consensus 126 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~---~~P~llllD 201 (449)
.+..+||.|+|.++..-........++..+++ ++++.+||.+. +++++.+|||||+||++||++|+ .+|+++|||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD 837 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD 837 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 46678999999887542111111233444556 58899999886 79999999999999999999998 699999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee------CCeEEEecChhhHH
Q 044030 202 EPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS------AGQTVYFGPATAAN 268 (449)
Q Consensus 202 EPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~------~G~iv~~g~~~~~~ 268 (449)
|||+|||+.++..+++.|++++++ |. |||+++|++ ..+ ..||++++|. +|++++.|+++++.
T Consensus 838 EPTsGLD~~~~~~Ll~lL~~L~~~-G~--TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 838 EPTTGLHTHDIKALIYVLQSLTHQ-GH--TVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CC--EEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999854 55 999999997 455 8999999996 78999999998764
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=1.5e-27 Score=226.08 Aligned_cols=191 Identities=17% Similarity=0.149 Sum_probs=134.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEe-cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-e-c--c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAK-PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-K-K--A 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~-~-~--~ 111 (449)
.|+++|+. .| + + . ++++|... +|++++|+|||||||||||++|++.+... ..+....+.. . . .
T Consensus 5 ~i~l~nf~-~y-~----~-~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~ 72 (213)
T cd03279 5 KLELKNFG-PF-R----E-E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPG 72 (213)
T ss_pred EEEEECCc-Cc-C----C-c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCC
Confidence 46677776 31 1 1 1 56666544 58999999999999999999999654211 1233332211 0 1 1
Q ss_pred cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 112 ~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.....+++++|+..... ++.... +.+..+..+.+ .+...++.+..++++..|||||+||++||+||
T Consensus 73 ~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 73 EDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred CccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHH
Confidence 12245889998864311 111111 22222222111 24455577888999999999999999999999
Q ss_pred Hh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 192 LT----------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 192 ~~----------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
+. +|++++|||||+|||+.++..+.+.|++++++ +. |||++||++ +.+...+|+++++++|.
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~--tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE-NR--MVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CC--EEEEEECch-HHHHhhCcEEEEEecCC
Confidence 85 57899999999999999999999999999744 55 999999997 57888999999999875
No 380
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=9.6e-27 Score=236.50 Aligned_cols=221 Identities=24% Similarity=0.425 Sum_probs=188.1
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-c-
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-A- 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~-~- 111 (449)
....|+++||++. - ..+...+++|||++++||++||.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. .
T Consensus 254 g~~vL~V~~L~v~-~----~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~ 325 (501)
T COG3845 254 GEVVLEVEDLSVK-D----RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGR 325 (501)
T ss_pred CCeEEEEeeeEee-c----CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEecccc
Confidence 4578999999987 2 13357899999999999999999999999999999999998663 69999999985 1
Q ss_pred --c---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhcc----CCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCC
Q 044030 112 --L---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQ----LPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLS 178 (449)
Q Consensus 112 --~---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 178 (449)
. ....++|||.|. .+.+.+|+.||+.+...-. ...-......++.+.++++.+++. .-.+.+++.||
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LS 405 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLS 405 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcC
Confidence 1 124689999985 5789999999998875421 111245566778889999999997 44577789999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||++||+-+||+|..+|++|++.+||.|||..+...|.+.|.+.+++ | +.|+++|-+. +|++.+||+|.+|++|++
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~-G--~AVLLiS~dL-DEil~lsDrIaVi~~Gri 481 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-G--KAVLLISEDL-DEILELSDRIAVIYEGRI 481 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc-C--CEEEEEehhH-HHHHHhhheeeeeeCCce
Confidence 99999999999999999999999999999999999999999999854 4 4999999996 689999999999999999
Q ss_pred EEecChhh
Q 044030 259 VYFGPATA 266 (449)
Q Consensus 259 v~~g~~~~ 266 (449)
+...++++
T Consensus 482 ~~~~~~~~ 489 (501)
T COG3845 482 VGIVPPEE 489 (501)
T ss_pred eccccccc
Confidence 98887764
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=1.1e-27 Score=225.45 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=124.8
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEecc--cccCcEEEEcCCC-----CCCCC
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALA----GRLGSDTRQTGKILINGHKKA--LAYGTSAYVTQDD-----TLITT 129 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~----G~~~~~~~~~G~I~~~g~~~~--~~~~~i~yv~Q~~-----~l~~~ 129 (449)
..++++.+| +++|+|||||||||||++|. |...+. +|.+..+..... .....+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345667788 99999999999999999995 876553 455541111111 1234689999987 33455
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH------HHHHHHHHhCCCEEEEeCC
Q 044030 130 LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR------VSISIEILTRPKLLFLDEP 203 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR------v~ia~aL~~~P~llllDEP 203 (449)
+|+.|++.+.. .. .+++.+ +++++.||+||+|| ++||++++.+|+++++|||
T Consensus 91 ~~~~~~~~~~~---------~~----~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 91 LAILENVIFCH---------QG----ESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hhHhhceeeec---------hH----HHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 68888875421 11 122222 77889999999996 7899999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 204 TSGLDSAASY-YVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 204 tsgLD~~~~~-~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|++||+..+. .+.+.|++++++.|. |||++||++. ....||+++.|.+
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~~~~--~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQKNF--QLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccCC--EEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999 999999999754455 9999999963 4568999999964
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.95 E-value=2.6e-27 Score=249.19 Aligned_cols=192 Identities=28% Similarity=0.401 Sum_probs=158.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++++|+++. .+ +++..|++.++.+++||.+.|.||||||||||+|+|+|+.+.+ +|+|.+-. .
T Consensus 390 ~~~i~~~nl~l~-~p----~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P~------~ 455 (604)
T COG4178 390 DHGITLENLSLR-TP----DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMPA------D 455 (604)
T ss_pred cceeEEeeeeEE-CC----CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecCC------C
Confidence 467999999997 22 4458999999999999999999999999999999999998764 78876541 2
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC------CCCChHHHHHHHHH
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI------RRLSGGQKRRVSIS 188 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~------~~LSgGerqRv~ia 188 (449)
..+-|+||.+.+... |.+|-+.+..... .-.++.+.++|.++||.+..++.= +.||+|||||+++|
T Consensus 456 ~~~lflpQ~PY~p~G-tLre~l~YP~~~~-------~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 456 SALLFLPQRPYLPQG-TLREALCYPNAAP-------DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred CceEEecCCCCCCCc-cHHHHHhCCCCCC-------CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHH
Confidence 347899999999888 9999997753221 123456788999999987655433 68999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
|.|+++|++++|||.||+||+.+...+++.+++-.. +.|||.+.|.+ .+..+.++.+-+.
T Consensus 528 RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp----~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP----DATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCC----CCEEEEeccch--hhHHHHhhheeec
Confidence 999999999999999999999999999999998542 45999999996 4677777766554
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.95 E-value=1.3e-26 Score=258.34 Aligned_cols=126 Identities=26% Similarity=0.380 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhCC---CEEEEeCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTRP---KLLFLDEPT 204 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~P---~llllDEPt 204 (449)
.|||.|++.|...+. . .....+.++.+||.. .+++++..||||||||+.||++|+.+| +++||||||
T Consensus 791 ~ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPt 861 (943)
T PRK00349 791 DMTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 861 (943)
T ss_pred cCcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCC
Confidence 378999998875432 1 123467899999986 579999999999999999999999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
+|||+..+..+++.|+++.+ .|. |||+++|++. .+ ..+|+++.| ++|++++.|+++++.
T Consensus 862 sGLD~~~~~~L~~~L~~l~~-~G~--TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 862 TGLHFEDIRKLLEVLHRLVD-KGN--TVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999974 454 9999999973 44 689999999 799999999998764
No 384
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.7e-25 Score=248.98 Aligned_cols=125 Identities=24% Similarity=0.351 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHh---CCCEEEEeCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILT---RPKLLFLDEPT 204 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~---~P~llllDEPt 204 (449)
.|||.|.+.|...+. . ..+..++++.+||.. ..++++..|||||+||+.||++|+. +|++++|||||
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPt 859 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPT 859 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCC
Confidence 467778877765432 0 113457889999986 5799999999999999999999997 59999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhH
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAA 267 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~ 267 (449)
+|||+..+..+++.|+++.+ .|. |||+++|++. .+ ..||++++| ++|++++.|+++++
T Consensus 860 sgLD~~~~~~L~~~L~~l~~-~G~--TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 860 TGLHFDDIKKLLEVLQRLVD-QGN--TVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999984 454 9999999973 44 679999999 79999999998754
No 385
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.94 E-value=2.5e-26 Score=234.62 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=150.2
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-c
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-Y 114 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-~ 114 (449)
..+.+.|+++++ .++.+++|++|++.+|+-+||+|||||||||+|++|+|...|.....+ ++......... .
T Consensus 74 ~dvk~~sls~s~------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 74 RDVKIESLSLSF------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-FYLLSREIEPSEK 146 (614)
T ss_pred ccceeeeeeecc------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-hhhhcccCCCchH
Confidence 357899999982 457899999999999999999999999999999999999877422222 32222221100 0
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHh-cc----------------CCCCCCHHHHHHHHHHHHHHcCC-chhhCccCCC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQ-LQ----------------LPDTMPKSDKKERAEVTIREMGL-QDAMNTRIRR 176 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~~----------------~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~~~ 176 (449)
+.+-++.+ +.-..+.-+...+. +. ....+..+..+.++..+|..+|. .+..++.+.+
T Consensus 147 ~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~ 221 (614)
T KOG0927|consen 147 QAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKD 221 (614)
T ss_pred HHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhc
Confidence 00101110 00000000100000 00 00012223344566677777775 5788999999
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 177 LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
||||+|+|+++||+|..+|.+|+|||||++||..+..-+-+.|.+..+ + ++++++|. .+.+-..|.+|+-|.++
T Consensus 222 ~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~----~-~lVi~sh~-QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 222 LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR----I-ILVIVSHS-QDFLNGVCTNIIHLDNK 295 (614)
T ss_pred cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC----c-eEEEEecc-hhhhhhHhhhhheeccc
Confidence 999999999999999999999999999999999999999999887642 2 79999999 56888999999999999
Q ss_pred e-EEEecChhh
Q 044030 257 Q-TVYFGPATA 266 (449)
Q Consensus 257 ~-iv~~g~~~~ 266 (449)
+ +.|.|+-++
T Consensus 296 kl~~y~Gnydq 306 (614)
T KOG0927|consen 296 KLIYYEGNYDQ 306 (614)
T ss_pred ceeeecCCHHH
Confidence 9 556676654
No 386
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.3e-27 Score=229.84 Aligned_cols=200 Identities=25% Similarity=0.319 Sum_probs=160.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-- 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-- 113 (449)
-.|+++|+.|.|. ...-=+..||++|++||++-|+|.||||||||++.|+|++.|+ +|+|++||++++..
T Consensus 321 ~~lelrnvrfay~-----~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~l 392 (546)
T COG4615 321 KTLELRNVRFAYQ-----DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQL 392 (546)
T ss_pred cceeeeeeeeccC-----cccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCH
Confidence 3689999999842 1224578999999999999999999999999999999999885 99999999986421
Q ss_pred --c-CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh---CccC--CCCChHHHHHH
Q 044030 114 --Y-GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM---NTRI--RRLSGGQKRRV 185 (449)
Q Consensus 114 --~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~---~~~~--~~LSgGerqRv 185 (449)
+ +-++-|+-|..+|+.+-. +++ ....+.++.+++++.+.+.. |... -.||.|||||+
T Consensus 393 edYR~LfSavFsDyhLF~~ll~------------~e~---~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRl 457 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLG------------PEG---KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRL 457 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhC------------Ccc---CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHH
Confidence 2 234556666666664211 111 12235678888888886543 3332 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
++..|++-+-+|+++||=.+.-||.-++.+.+.+--+-++.|+ ||+.+|||- .-+..+||++.+.+|+++.--
T Consensus 458 All~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK--TI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK--TIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC--eEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999999888776667766 999999993 478899999999999998764
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=2e-25 Score=209.22 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=125.5
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE--CCEec------ccccCcEEEEcCCCCCCCC
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI--NGHKK------ALAYGTSAYVTQDDTLITT 129 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~--~g~~~------~~~~~~i~yv~Q~~~l~~~ 129 (449)
-++++++.+.+| +.+|+|||||||||||.+|...+.. +... -|... ......+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~------~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGG------KASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcC------CcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC
Confidence 347788888887 8899999999999999999854322 1111 12110 0112347788887665541
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH----HhCCCEEEEeCCCC
Q 044030 130 LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI----LTRPKLLFLDEPTS 205 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL----~~~P~llllDEPts 205 (449)
. . .....+.++++++. .+..+++++.||+|||||++||+|+ +.+|++++|||||+
T Consensus 84 -----------~------~-~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 84 -----------P------L-CVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred -----------c------C-CHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 0 0 11123456677776 6778999999999999999999999 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhc-CCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 206 GLDSAASYYVMSRIAKLGQRD-GIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~-g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|||+..+..+.+.|++++++. + +.|||+++|++. ++.. +|+|.+|..|+
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~-~~~iii~th~~~-~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPG-RQFIFITPQDIS-GLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCC-cEEEEEECCccc-cccc-ccceeEEEecC
Confidence 999999999999999986441 2 348999999974 5665 49999998764
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=5.3e-26 Score=208.05 Aligned_cols=226 Identities=20% Similarity=0.280 Sum_probs=174.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEec-c----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT-RQTGKILINGHKK-A---- 111 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~-~~~G~I~~~g~~~-~---- 111 (449)
+.++|++..+ .. ..|...++++||+++.+||+-+++|.||||||-..|+|+|..+..- .+.-...+++.+. .
T Consensus 4 LDIrnL~IE~-~T-sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 4 LDIRNLTIEF-KT-SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred ccccceEEEE-ec-CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 5688888873 22 2366789999999999999999999999999999999999875420 1123345555442 1
Q ss_pred cc----cCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCC---HHHHHHHHHHHHHHcCCch---hhCccCCCCCh
Q 044030 112 LA----YGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMP---KSDKKERAEVTIREMGLQD---AMNTRIRRLSG 179 (449)
Q Consensus 112 ~~----~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~---~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSg 179 (449)
.+ .+.++++||++. +-|.-+|...+.-.......++.. -..+++++.++|..+|+.+ ....++.+|.-
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 11 245789999975 445545544442221111001110 1234567889999999964 56778899999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||-|+|.||.|++..|++|+.||||+.+|+.++.+|.++|.++.+..|. ||++++||. ..+-+.||++-||.=|+-+
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~T--tILL~s~Dl-~~is~W~d~i~VlYCGQ~~ 238 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNT--TILLISHDL-QMISQWADKINVLYCGQTV 238 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCc--eEEEEcccH-HHHHHHhhheEEEEecccc
Confidence 9999999999999999999999999999999999999999999876655 999999996 5799999999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
..++.+++.
T Consensus 239 ESa~~e~l~ 247 (330)
T COG4170 239 ESAPSEELV 247 (330)
T ss_pred cccchhHHh
Confidence 999988775
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.93 E-value=4.2e-26 Score=233.00 Aligned_cols=201 Identities=24% Similarity=0.335 Sum_probs=160.2
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
+-.+.++|+++.| . ++-.++++++|-+..++.++++||||||||||||+++|.+.| ..|.|.-.-+.
T Consensus 387 ~pvi~~~nv~F~y-~----~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p---~~G~vs~~~H~----- 453 (614)
T KOG0927|consen 387 PPVIMVQNVSFGY-S----DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP---TIGMVSRHSHN----- 453 (614)
T ss_pred CCeEEEeccccCC-C----CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc---ccccccccccc-----
Confidence 4468899999983 2 233799999999999999999999999999999999999977 47888654332
Q ss_pred CcEEEEcCC--CCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHH
Q 044030 115 GTSAYVTQD--DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 115 ~~i~yv~Q~--~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.+++.-|. +.+.-+.++.|++.=.. +.....+.+..++..+||+ +..+.+++.||+|||+||.+|+.+
T Consensus 454 -~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 454 -KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLA 524 (614)
T ss_pred -cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHH
Confidence 23444454 34444567777764221 1123445688899999998 667888899999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE-EEecCh
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT-VYFGPA 264 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i-v~~g~~ 264 (449)
+..|.+|+|||||+|||..+...+.+.|.++- | +||++|||. -.+.++++++.+..+|.+ .+.|..
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~-----G-gvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEFP-----G-GVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhccC-----C-ceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 99999999999999999999999999998763 2 899999996 478999999999988766 444543
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=9.7e-25 Score=218.99 Aligned_cols=191 Identities=25% Similarity=0.329 Sum_probs=154.1
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++|.+++++| ++ --|.-=.++|..||+++++||||-||||+.++|+|.++|+ +|. ..+
T Consensus 340 ~~lv~y~~~~k~~------g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~~----- 400 (591)
T COG1245 340 DTLVEYPDLKKTY------GD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EED----- 400 (591)
T ss_pred ceeeecchheeec------Cc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Ccc-----
Confidence 3456777887772 22 2466667788899999999999999999999999999885 675 111
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
-.++|=||.-.--.+.||.+.+.-....... .. -...++++-|+|++..++++.+|||||.|||+||.+|..+
T Consensus 401 ~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~----~s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 401 LKVSYKPQYISPDYDGTVEDLLRSAIRSAFG----SS---YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSRE 473 (591)
T ss_pred ceEeecceeecCCCCCcHHHHHHHhhhhhcc----cc---hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccc
Confidence 2478888876555667999988655432111 11 1235678889999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
+++++||||++-||...+..+.+.|+++....++ |.+++-||.. .+.-++|++++..
T Consensus 474 ADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~k--ta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 474 ADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEK--TALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred cCEEEecCchhhccHHHHHHHHHHHHHHHhhcCc--eEEEEeccee-hhhhhhceEEEEe
Confidence 9999999999999999999999999999976655 9999999974 5666789998875
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=6.6e-25 Score=212.58 Aligned_cols=172 Identities=20% Similarity=0.251 Sum_probs=116.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------c-cc--ccC--cEEEEcCCCCC-CCCCCHHHHH
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-------K-AL--AYG--TSAYVTQDDTL-ITTLTVKEAV 136 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-------~-~~--~~~--~i~yv~Q~~~l-~~~lTv~e~l 136 (449)
.+++|+|||||||||||++|++.+.+. .|++..++.. . .. ... .+.|..|++.. .-..++.+..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 399999999999999999999987542 4655543321 0 00 011 23344443221 1011111110
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCch----------------------hhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQD----------------------AMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----------------------~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
. ..+.. + .....+.++++++.+|+.. ..++++..||||||||++||++++.+
T Consensus 100 ~---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 100 S---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred e---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 0 00100 1 1112344668888888842 12344589999999999999999875
Q ss_pred ----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 195 ----PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 195 ----P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|+++||||||+|||+..+..+.+.|++++++ |. +||++||++ ++...||++++|..
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~--~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NF--QFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-Cc--EEEEEECCH--HHHhhCCeEEEEEe
Confidence 8999999999999999999999999999744 54 999999994 56789999999863
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.5e-24 Score=218.91 Aligned_cols=200 Identities=20% Similarity=0.273 Sum_probs=145.7
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...|...|++.. + |++.+|.+-++++..|.-+||+|+||+|||||||+|+. |.|.....+...
T Consensus 78 ~~Di~~~~fdLa-~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~-- 140 (582)
T KOG0062|consen 78 SKDIHIDNFDLA-Y-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV-- 140 (582)
T ss_pred ccceeeeeeeee-e-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe--
Confidence 445777788877 2 67899999999999999999999999999999999985 333322221111
Q ss_pred CcEEEEcCC-CCCCCCCCHHHHHHHHHhccCCCCCCHH-HHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHH
Q 044030 115 GTSAYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKS-DKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 115 ~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
+-.|++-. ..+..++++.+.+.--..+ ... ...+..+.+|..+|.+ +...+++++||||-|.|+++||||
T Consensus 141 -~g~~t~~~~~~l~~D~~~~dfl~~e~~l------~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 141 -RGDDTEALQSVLESDTERLDFLAEEKEL------LAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARAL 213 (582)
T ss_pred -eccchHHHhhhhhccHHHHHHHHhhhhh------hccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHH
Confidence 01122222 1223333333333221111 111 2233344488999997 466788899999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE-EEecChh
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT-VYFGPAT 265 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i-v~~g~~~ 265 (449)
..+|+||||||||+.||..+..-+.+.|+.+. . |+|++||| +..+-..|..|+-+++-++ .|.|.-+
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~----~--T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK----I--TSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHHhhCC----c--eEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 99999999999999999999999999998764 3 99999999 6788889999999887766 4556544
No 393
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.90 E-value=8.3e-23 Score=210.35 Aligned_cols=199 Identities=21% Similarity=0.311 Sum_probs=156.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
..+++++|++. .++ .+..+++|+||.|+.|+-+.|.||||||||+||++|+|+.+. .+|++..-.... .+
T Consensus 432 n~i~~e~v~l~-tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~~---~~ 501 (659)
T KOG0060|consen 432 NAIEFEEVSLS-TPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDGG---PK 501 (659)
T ss_pred ceEEeeeeeec-CCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccCC---CC
Confidence 57999999987 221 256789999999999999999999999999999999999865 389887654321 14
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC-----------CCCChHHHHH
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----------RRLSGGQKRR 184 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----------~~LSgGerqR 184 (449)
.+-|+||.|.+.-. |.||.+.|...--.+ ..+....+++.+.|+.++|.+...+-. ..||+||+||
T Consensus 502 ~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 502 DLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred ceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence 58899999988766 999999886332111 111223455677777777766543322 5899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+++||-+.++|++-+|||-||++|......+.+.+++. |.|.|-++|.. .+.+.-|.++-|+.
T Consensus 579 La~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~------giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 579 LAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM------GITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc------CCeEEEeccHH--HHHhhhhEEEEecC
Confidence 99999999999999999999999999999988888753 44999999986 47777888888874
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.89 E-value=1.9e-22 Score=184.27 Aligned_cols=211 Identities=24% Similarity=0.304 Sum_probs=161.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..+++.++.|+| . ...+++-|+|++++.|.-..++|.||||||||||+|+|--.- ..|.|.++|.+.-.
T Consensus 12 ~aievsgl~f~y-~----~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv---~~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 12 FAIEVSGLQFKY-K----VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV---GGGVVQVLGRSAFHDTS 83 (291)
T ss_pred ceEEEeccEEec-c----cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc---cCCeEEEcCcCcccccc
Confidence 458999999983 2 455899999999999999999999999999999999996533 25899999975310
Q ss_pred --ccCcEEEEcCC----------CCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH
Q 044030 113 --AYGTSAYVTQD----------DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180 (449)
Q Consensus 113 --~~~~i~yv~Q~----------~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 180 (449)
.....+|+--+ ..+-.++++.+.| |+.. +... ++-+++++.|+++ ..-+.+.+|-|
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDId--l~WRmHkvSDG 151 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDID--LRWRMHKVSDG 151 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheecc--ceEEEeecccc
Confidence 11223444322 2233356665544 4322 1111 3445667777664 33456789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||.|++.|++.-++|+|||-|-.||..++..+++.+++-+++.|. ||+..||-- +-+.....+++.|+.|+++.
T Consensus 152 qrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rga--tIVYATHIF-DGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 152 QRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGA--TIVYATHIF-DGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred chhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCc--EEEEEeeec-cchhhcchhEEEecCCeeee
Confidence 999999999999999999999999999999999999999999987766 999999995 46888999999999999987
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.-+.+.+.+
T Consensus 229 ~l~~~~i~e 237 (291)
T KOG2355|consen 229 NLKYQKIKE 237 (291)
T ss_pred ccccchhhh
Confidence 555444433
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=8.2e-23 Score=203.79 Aligned_cols=192 Identities=28% Similarity=0.389 Sum_probs=150.5
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
.+-.|-+.||+|.| . +.++++++++|-|.-...+||+||||.||||||++|.|-+.|. .|+.+-|-
T Consensus 583 ~PPvLGlH~VtFgy-~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKnh------ 648 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGY-P----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKNH------ 648 (807)
T ss_pred CCCeeecccccccC-C----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhccc------
Confidence 34568899999983 2 6788999999999999999999999999999999999999874 67664432
Q ss_pred cCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc-cCCCCChHHHHHHHHHHH
Q 044030 114 YGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT-RIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 114 ~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-~~~~LSgGerqRv~ia~a 190 (449)
+-+||+..|.. .+-..-|.-|+|.-.. +++. +.+...|..+||...+++ ++..||||||-||++|.-
T Consensus 649 rL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpy----q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeL 718 (807)
T KOG0066|consen 649 RLRIGWFDQHANEALNGEETPVEYLQRKF------NLPY----QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAEL 718 (807)
T ss_pred eeeeechhhhhHHhhccccCHHHHHHHhc------CCCh----HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHH
Confidence 23588888874 4555667777774322 2222 235567889999876665 469999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
-+..|++|||||||++||..+...+.+.|.++. | .||++|||-. .+.+.-..++|+.+-
T Consensus 719 al~~PDvlILDEPTNNLDIESIDALaEAIney~-----G-gVi~VsHDeR-Li~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 719 ALGGPDVLILDEPTNNLDIESIDALAEAINEYN-----G-GVIMVSHDER-LIVETDCNLWVVENQ 777 (807)
T ss_pred hcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc-----C-cEEEEecccc-eeeecCceEEEEccC
Confidence 999999999999999999999999999998873 2 7999999953 444444566666543
No 396
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=2.1e-22 Score=190.81 Aligned_cols=171 Identities=19% Similarity=0.289 Sum_probs=110.6
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCC----------------ceeEE--EECCEecccccCcE-EE
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----------------QTGKI--LINGHKKALAYGTS-AY 119 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~----------------~~G~I--~~~g~~~~~~~~~i-~y 119 (449)
++++.+.+.+| +.+|+|||||||||||.+|+-.+..... ..+.| .+++.+.....+.+ .+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~ 92 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF 92 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence 35666776665 8899999999999999998765522100 01111 11110000111112 24
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-CchhhCccCCCCChHHHHHHHHHHHH----Hh
Q 044030 120 VTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG-LQDAMNTRIRRLSGGQKRRVSISIEI----LT 193 (449)
Q Consensus 120 v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerqRv~ia~aL----~~ 193 (449)
++|+.. -+..+++.|.+ ..++ ..+..+..+.+||||||||+.++.+| +.
T Consensus 93 ~~q~~~~~~~~~~~~e~l-------------------------~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~ 147 (213)
T cd03277 93 LPQDRVGEFAKLSPIELL-------------------------VKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELT 147 (213)
T ss_pred EchHHHHHHHhCChHhHh-------------------------eeeecCCCccccchhhccccHHHHHHHHHHHHHHhcc
Confidence 444321 12233333222 1221 12334667889999999998877554 57
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcC--eEEEeeCCe
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH--NLCLLSAGQ 257 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D--~v~~l~~G~ 257 (449)
+|+++++||||+|||+.++..+++.|++++++.| +.|+|++||++. ++.+.+| ++++|++|+
T Consensus 148 ~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g-~~~viiith~~~-~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 148 RCPFRVVDEINQGMDPTNERKVFDMLVETACKEG-TSQYFLITPKLL-PGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhhcCC-CceEEEEchhhc-cCCcccCceEEEEEecCc
Confidence 9999999999999999999999999999975423 138999999964 5667776 788899886
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.4e-22 Score=206.19 Aligned_cols=199 Identities=22% Similarity=0.274 Sum_probs=161.1
Q ss_pred CeeEEEEeeEEEEeecCccccc-ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSS-SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
+-.+++.+|++.| . .+. +++.++++.++.-.-.+++|+||+||||++|++.|-+.| ..|.+.+++.
T Consensus 360 ~p~l~i~~V~f~y-~----p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~---~rgi~~~~~r----- 426 (582)
T KOG0062|consen 360 PPNLRISYVAFEY-T----PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP---TRGIVGRHPR----- 426 (582)
T ss_pred CCeeEEEeeeccC-C----CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc---ccceeeeccc-----
Confidence 3468899999873 2 222 799999999999999999999999999999999997765 3787776653
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHH
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.+++|-.|...-+-++.|.+-- +....+- +.. ++.+.+.+..+||+ +.+.+.+.+||||||-||++|....
T Consensus 427 -~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~p--G~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 427 -LRIKYFAQHHVDFLDKNVNAVD-FMEKSFP--GKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTW 498 (582)
T ss_pred -ceecchhHhhhhHHHHHhHHHH-HHHHhCC--CCC----HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhc
Confidence 4688999986555445554432 3333331 222 34577789999997 5677779999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
.+|-+|+|||||+.||..+...+.+.|+.+. | .||++||| .+.+..+|+.+++.++|++.-.
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~-----G-GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN-----G-GVVLVSHD-EEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcC-----C-cEEEEECc-HHHHhhcCceeEEEcCCcEEee
Confidence 9999999999999999999999999999873 2 79999999 5689999999999999998653
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.88 E-value=1.2e-22 Score=190.50 Aligned_cols=147 Identities=19% Similarity=0.188 Sum_probs=111.2
Q ss_pred eeeeeeEEEecCe-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCC
Q 044030 58 ILEDLTGYAKPGH-LLAIMGPSGSGKTTLLDALA--------GRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128 (449)
Q Consensus 58 iL~~vs~~i~~Ge-~~~IlGpnGaGKSTLL~~l~--------G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~ 128 (449)
-+-++|+++.+|+ +++|.|||||||||||++|+ |...|. .. ...++|+.|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~~------------~~~~~~~~~~----- 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---AE------------GSSLPVFENI----- 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---cc------------cccCcCccEE-----
Confidence 3457999999995 89999999999999999998 322220 00 0012232222
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD 208 (449)
+..++..+..+.....+|+||||++.|+++ +.+|+++++|||++|||
T Consensus 76 --------------------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD 122 (200)
T cd03280 76 --------------------------------FADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTD 122 (200)
T ss_pred --------------------------------EEecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCC
Confidence 111222333455567899999999999987 48999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 209 SAASYYVM-SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 209 ~~~~~~i~-~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+..+..++ ..++.+.+ .|. ++|++||+. ++..+||++++|.+|++.+.+
T Consensus 123 ~~~~~~i~~~~l~~l~~-~~~--~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 123 PVEGAALAIAILEELLE-RGA--LVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHHh-cCC--EEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99999996 46787764 455 999999983 678999999999999998874
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=4.8e-22 Score=199.71 Aligned_cols=169 Identities=25% Similarity=0.398 Sum_probs=128.4
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------------ccc-----c--cCcEEEEcCCC
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-------------KAL-----A--YGTSAYVTQDD 124 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-------------~~~-----~--~~~i~yv~Q~~ 124 (449)
..++|+++||+||||-||||-+|+|+|.+.|. =|+- ++.+ ... . .-++..=+|.-
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PN---LG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYV 170 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN---LGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYV 170 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccC---CCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHH
Confidence 35799999999999999999999999999874 2321 2211 000 0 00122223322
Q ss_pred ----CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 044030 125 ----TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFL 200 (449)
Q Consensus 125 ----~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llll 200 (449)
..+.. ||.|-|.-. ..+-..+++++.|+|++..|+.+.+|||||-||++||.+++.+.+++++
T Consensus 171 d~iPk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~F 237 (591)
T COG1245 171 DLIPKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFF 237 (591)
T ss_pred HHHHHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEE
Confidence 22222 555555221 1123578899999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 201 DEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 201 DEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|||||-||...+....+.++++++. ++ +||++-||+ .-+.-++|-|.++..
T Consensus 238 DEpsSyLDi~qRl~~ar~Irel~~~-~k--~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 238 DEPSSYLDIRQRLNAARVIRELAED-GK--YVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred cCCcccccHHHHHHHHHHHHHHhcc-CC--eEEEEechH-HHHHHhhheeEEEec
Confidence 9999999999999999999999954 44 999999996 456667898888873
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.84 E-value=2.3e-20 Score=172.02 Aligned_cols=74 Identities=22% Similarity=0.269 Sum_probs=66.9
Q ss_pred CChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE
Q 044030 177 LSGGQKRRVSISIEIL----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL 252 (449)
Q Consensus 177 LSgGerqRv~ia~aL~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~ 252 (449)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++ |. |+|++||++ +....+|+++.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~--tiIiiSH~~--~~~~~adrvi~ 169 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TS--QFIVITLKK--EMFENADKLIG 169 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CC--EEEEEECCH--HHHhhCCeEEE
Confidence 9999999999999996 699999999999999999999999999999754 45 999999996 35578999999
Q ss_pred eeC
Q 044030 253 LSA 255 (449)
Q Consensus 253 l~~ 255 (449)
+..
T Consensus 170 i~~ 172 (178)
T cd03239 170 VLF 172 (178)
T ss_pred EEE
Confidence 975
No 401
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.83 E-value=1.8e-20 Score=190.95 Aligned_cols=189 Identities=23% Similarity=0.373 Sum_probs=139.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|.++||-+- .+ ....++..++|.|++|-.+.|+||||||||+|+++|+|+.|- +.|.... ....+
T Consensus 481 gI~lenIpvI-tP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---y~g~L~~------P~~~~ 546 (728)
T KOG0064|consen 481 GIILENIPVI-TP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---YNGLLSI------PRPNN 546 (728)
T ss_pred ceEEecCcee-cc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---cCCeeec------CCCcc
Confidence 4778888764 22 456789999999999999999999999999999999999854 3444432 12345
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHh---ccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC---------CCCChHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQ---LQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI---------RRLSGGQKRR 184 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~---------~~LSgGerqR 184 (449)
+.|+||.|..-- =|.+|.+-+.-. ++ ..+.. ++....+|+.+.|++.+.+-. ..||||||||
T Consensus 547 mFYIPQRPYms~-gtlRDQIIYPdS~e~~~-~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR 620 (728)
T KOG0064|consen 547 IFYIPQRPYMSG-GTLRDQIIYPDSSEQMK-RKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQR 620 (728)
T ss_pred eEeccCCCccCc-CcccceeecCCcHHHHH-hcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHH
Confidence 899999987653 366666644311 11 01122 234566777777776665544 4799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
+++||.+.++|+.-+|||-||+..+.....+.+..++ .|. +.|-+||+|+ +.++-..++-.
T Consensus 621 ~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi--~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 621 MGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGI--SLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred HHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCc--eEEEeecCcc--HHHHHHHHHhc
Confidence 9999999999999999999999998888888776654 444 9999999985 55554444443
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.83 E-value=1e-20 Score=177.41 Aligned_cols=147 Identities=17% Similarity=0.144 Sum_probs=106.4
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. ..+++|.+.+++.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----SSFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----CccCcccceEEEeccchhc
Confidence 45778887765 79999999999999999999998542 1123433221 1366777788999999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 044030 136 VYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i 215 (449)
+.++... ...+ .+++.++++.+++ .+|+++++||||+|+|+..+..+
T Consensus 80 l~~~~s~------~~~e-~~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 80 LRDGISY------FYAE-LRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred cccccCh------HHHH-HHHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHH
Confidence 9775421 1222 2567778887763 79999999999999999999877
Q ss_pred H-HHHHHHHhhcCCCeEEEEEecCCcHHHHhh--cCeEEEe
Q 044030 216 M-SRIAKLGQRDGIGRTIIASIHQPSSEVFQL--FHNLCLL 253 (449)
Q Consensus 216 ~-~~l~~l~~~~g~g~tii~~tH~~~~~i~~~--~D~v~~l 253 (449)
. .+++.+.+ .|. |+|++||++. .+..+ .+++..+
T Consensus 127 ~~~ll~~l~~-~~~--tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 127 SAAVLKFLKN-KNT--IGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHH-CCC--EEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 5 47888874 455 9999999963 45443 3444443
No 403
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.83 E-value=6.6e-21 Score=181.68 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=116.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEE-EEcCCCCCCCCCCHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA-YVTQDDTLITTLTVK 133 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~-yv~Q~~~l~~~lTv~ 133 (449)
.+.+.+|++++.++|++++|.||||+||||||++++-.. . ..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------------~-la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV------------------L-MAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH------------------H-HHHhCCCcCcccEEEe-----
Confidence 456899999999999999999999999999999997210 0 01122 4554332211
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCC
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI--LTRPKLLFLDEP---TSGLD 208 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~P~llllDEP---tsgLD 208 (449)
.+++++..+++.+. ..+++|.|+++++.+++++ +.+|+++||||| |++||
T Consensus 72 ----------------------~~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 72 ----------------------IVDCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred ----------------------ccceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 12334455566533 3678999999999999999 899999999999 89999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 209 ~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
+..... ..++.+.++.|. ++|++||+ .++.++||++..+++|++...+.
T Consensus 127 ~~~~~~--~il~~l~~~~~~--~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAW--AIAEYIATQIKC--FCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHH--HHHHHHHhcCCC--eEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 988854 344555533445 99999997 47899999999999999987764
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.83 E-value=4.9e-20 Score=183.44 Aligned_cols=186 Identities=28% Similarity=0.404 Sum_probs=143.2
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCC-----CCCceeEEEECCEecccccCcEEEEcCCCC-CC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS-----DTRQTGKILINGHKKALAYGTSAYVTQDDT-LI 127 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~-----~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~-l~ 127 (449)
....+|+|||+++++|++++|+|+|||||||||++|+|.... ..+.+|.|.+--.. ..+.+|.+.. -|
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f 467 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEF 467 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCccccccc
Confidence 346799999999999999999999999999999999996532 12346777653221 2345555432 24
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch--hhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 128 TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD--AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 128 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
...|+.|++.-- .. .-..+.++|...|+.+ ..-.+.++||-|||.|+.||.++...|.+++.||=.|
T Consensus 468 ~~~tilehl~s~---------tG--D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~A 536 (593)
T COG2401 468 GEVTILEHLRSK---------TG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAA 536 (593)
T ss_pred CchhHHHHHhhc---------cC--chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhh
Confidence 455777776211 00 1123567899999965 3466779999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEE
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTV 259 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv 259 (449)
.||+.++..+.+-|.+++++.|. |++++||.| +.+-.+ -|+++++.=|...
T Consensus 537 hLD~~TA~rVArkiselaRe~gi--TlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 537 HLDELTAVRVARKISELAREAGI--TLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCC--eEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 99999999999999999988876 999999997 345555 5888888766543
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.3e-19 Score=178.46 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=68.2
Q ss_pred CCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 175 RRLSGGQKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
..|||||+||+++|++++. +|+++++||||++||+.....+.+.|+++++ +. |+|++||++. +...+|++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~--tii~isH~~~--~~~~~d~~ 242 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SH--QVLCITHLPQ--VAAMADNH 242 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CC--EEEEEechHH--HHHhcCcE
Confidence 3499999999999987654 9999999999999999999999999999863 34 9999999973 56899999
Q ss_pred EEeeCCe
Q 044030 251 CLLSAGQ 257 (449)
Q Consensus 251 ~~l~~G~ 257 (449)
++|.+|.
T Consensus 243 ~~l~~~~ 249 (276)
T cd03241 243 FLVEKEV 249 (276)
T ss_pred EEEEEec
Confidence 9998764
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.81 E-value=1.5e-19 Score=164.04 Aligned_cols=141 Identities=26% Similarity=0.319 Sum_probs=99.9
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHH
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYY 138 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 138 (449)
....+..+.++.++.|+|||||||||+++++....-. ..|.+..... . +.-.++++....+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~---~~~~~~~~~~-~----~~g~~~~~~~~~~----------- 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGG---AQSATRRRSG-V----KAGCIVAAVSAEL----------- 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh---cchhhhccCc-c----cCCCcceeeEEEE-----------
Confidence 3445555666679999999999999999998765422 1222222110 0 0001112111111
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHH
Q 044030 139 SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~ 214 (449)
.. ...+||+||+||+++|++|+. +|+++++|||++|+|+.....
T Consensus 72 ---i~-----------------------------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 ---IF-----------------------------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred ---eh-----------------------------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 00 001299999999999999987 789999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 215 VMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 215 i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+.+.+.++.++ +. ++|++||++ ++...+|+++.|..
T Consensus 120 l~~~l~~~~~~-~~--~vii~TH~~--~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVK-GA--QVIVITHLP--ELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhc-CC--EEEEEcCCH--HHHHhhhhEEEEEE
Confidence 99999998755 55 999999996 45678999999864
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=7.9e-19 Score=204.17 Aligned_cols=126 Identities=20% Similarity=0.294 Sum_probs=104.5
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhC---CCEEEEeCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTR---PKLLFLDEPT 204 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~---P~llllDEPt 204 (449)
+|||.|.+.|.... ..-.+.-+.|..+||... +.++...|||||.||+-||..|..+ +.+++|||||
T Consensus 1660 ~mtv~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1660 QTPIEEVAETFPFL---------KKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred cCCHHHHHHHhhcc---------HHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 46777777665321 112334577889999864 6889999999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee------CCeEEEecChhhHH
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS------AGQTVYFGPATAAN 268 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~------~G~iv~~g~~~~~~ 268 (449)
+||++.....+++.|++|.+ .|. |||++.|++ ++...||.|+-|- .|+|++.|+|+++.
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~-~g~--tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~ 1795 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVS-LGH--SVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDIS 1795 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCC--eEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHh
Confidence 99999999999999999984 454 999999996 5777899999984 57999999999885
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.4e-20 Score=187.98 Aligned_cols=214 Identities=20% Similarity=0.309 Sum_probs=152.9
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec--
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-- 110 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~-- 110 (449)
...+.|.++|.+.+ . .++.++.|.|++|-.|..++++||||-||||||+.|+.+.-. .+..=+|++-.+.+
T Consensus 260 Ena~DIKiEnF~IS-A-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnIDvLlCEQEvva 332 (807)
T KOG0066|consen 260 ENAMDIKIENFDIS-A-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNIDVLLCEQEVVA 332 (807)
T ss_pred hhcccceeeeeeee-c-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-CCCCCceEeeeeeeee
Confidence 34677899999987 2 456799999999999999999999999999999999987421 01122333332211
Q ss_pred ------c----cccCcEEEEcCCCC-----CCCCCCHHHHHHHH-HhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCcc
Q 044030 111 ------A----LAYGTSAYVTQDDT-----LITTLTVKEAVYYS-AQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTR 173 (449)
Q Consensus 111 ------~----~~~~~i~yv~Q~~~-----l~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 173 (449)
. ...++...+-.+.. --...|+.|-+.-. ..++. .-....+.++..+|.-||.+ +..+++
T Consensus 333 d~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~rP 409 (807)
T KOG0066|consen 333 DSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQERP 409 (807)
T ss_pred cCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcCC
Confidence 0 00011111111110 11234565555322 12221 11122345677889999997 466778
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 174 ~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
...+|||-|.||++||||...|-+|+|||||+.||..+..-+-+.|+.|.+ |.++++||- ..+...|..|+.|
T Consensus 410 t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK------TLLIVSHDQ-gFLD~VCtdIIHL 482 (807)
T KOG0066|consen 410 TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK------TLLIVSHDQ-GFLDSVCTDIIHL 482 (807)
T ss_pred ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh------eeEEEeccc-chHHHHHHHHhhh
Confidence 899999999999999999999999999999999999999888899998863 999999995 5889999999999
Q ss_pred eCCeEEEe-cC
Q 044030 254 SAGQTVYF-GP 263 (449)
Q Consensus 254 ~~G~iv~~-g~ 263 (449)
++-++-|+ |.
T Consensus 483 D~qkLhyYrGN 493 (807)
T KOG0066|consen 483 DNQKLHYYRGN 493 (807)
T ss_pred hhhhhhhhcch
Confidence 98887554 54
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.5e-18 Score=184.93 Aligned_cols=127 Identities=28% Similarity=0.414 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhCC---CEEEEeCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTRP---KLLFLDEPT 204 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~P---~llllDEPt 204 (449)
+|||.|...|+... + .-.+.-+.|..+||.. .+.++...|||||.|||-+|.+|.... -+++|||||
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPT 853 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 853 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCC
Confidence 47888887776432 1 1233456677889975 468888999999999999999999887 899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHHH
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAANE 269 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~~ 269 (449)
+||-.....++++.|.+|.+ .|. |||++-|++ ++.+.+|.|+=| ..|+|++.|+|+++.+
T Consensus 854 TGLH~~Di~kLl~VL~rLvd-~Gn--TViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 854 TGLHFDDIKKLLEVLHRLVD-KGN--TVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999995 454 999999996 588999999998 3579999999998864
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.79 E-value=1.3e-19 Score=170.35 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=103.7
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHH
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYS 139 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 139 (449)
-..++++.+|++++|+|||||||||||++|++..-. ...|.... . ....++|..| ++..++..+
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~--~~~g~~~~-~-----~~~~i~~~dq---i~~~~~~~d----- 83 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL--AQIGCFVP-A-----ESASIPLVDR---IFTRIGAED----- 83 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH--HHcCCCcc-c-----cccccCCcCE---EEEEecCcc-----
Confidence 344566668999999999999999999999954311 01221100 0 0112233222 111111111
Q ss_pred HhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-H
Q 044030 140 AQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS-R 218 (449)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~-~ 218 (449)
..+.....++++++ ++..+.+++.+|+++++||||+|+|+.....+.. +
T Consensus 84 -----------------------------~i~~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~l 133 (202)
T cd03243 84 -----------------------------SISDGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAV 133 (202)
T ss_pred -----------------------------cccCCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHH
Confidence 11222344565555 4777788899999999999999999998888765 4
Q ss_pred HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 219 l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
++.+. +.+. ++|++||++ ++...++++..+..|++...+...+
T Consensus 134 l~~l~-~~~~--~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 134 LEHLL-EKGC--RTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHH-hcCC--eEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 66665 3454 999999985 5778899999999999998886543
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.78 E-value=1.6e-18 Score=193.68 Aligned_cols=136 Identities=22% Similarity=0.369 Sum_probs=110.4
Q ss_pred CCCCCHHHHHHHHHhccCCCC-CC-----HHHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCC--CE
Q 044030 127 ITTLTVKEAVYYSAQLQLPDT-MP-----KSDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRP--KL 197 (449)
Q Consensus 127 ~~~lTv~e~l~~~~~~~~~~~-~~-----~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P--~l 197 (449)
+..+||.|.+.|...+..+.. .. ..+..++++ .++.+||.+. +|+++.+|||||+|||.||++|+.+| ++
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 456899999998554422110 00 012234443 6888999876 79999999999999999999999997 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
++|||||+|||+..+..+++.|+++++ .|. |||+++|++. ++ ..||+|++| ++|++++.|+++++.
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~-~G~--TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRD-LGN--TLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 999999999999999999999999974 455 9999999964 55 469999999 999999999998763
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=2.2e-18 Score=192.31 Aligned_cols=136 Identities=24% Similarity=0.365 Sum_probs=108.6
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCH------HHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCC--CE
Q 044030 127 ITTLTVKEAVYYSAQLQLPDTMPK------SDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRP--KL 197 (449)
Q Consensus 127 ~~~lTv~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P--~l 197 (449)
+..|||.|.+.|...+........ .+..+++ +.+..+||... +++.+.+|||||+|||.||++|+.+| ++
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~l 510 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVL 510 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcE
Confidence 346899999988766532110000 0111222 34677899765 79999999999999999999999986 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
+||||||+|||+.....+++.|++++++ |. |||+++|++ +.+ ..||++++| ++|++++.|+++++.
T Consensus 511 lILDEPtagLD~~~~~~L~~~L~~L~~~-G~--TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 511 YVLDEPSIGLHQRDNERLINTLKRLRDL-GN--TVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHhC-CC--EEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 9999999999999999999999999854 55 999999996 445 589999999 899999999998763
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.74 E-value=3e-18 Score=161.25 Aligned_cols=136 Identities=19% Similarity=0.252 Sum_probs=99.6
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
+..+.+|+++++++|++++|+||||+||||+++++++..-- +.+ -.|| +...+.+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~-------------G~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI-------------GCFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc-------------CCCc---chhhcCccChh
Confidence 45789999999999999999999999999999999986311 100 1133 23344556666
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
++.. .++..+..++....+|+|++|+ ..+.+++.+|+++++|||++|+|+.....
T Consensus 74 ~I~~------------------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~ 128 (204)
T cd03282 74 RLLS------------------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFA 128 (204)
T ss_pred heeE------------------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHH
Confidence 6532 2233333455567899999965 56677889999999999999999977666
Q ss_pred H-HHHHHHHHhhcCCCeEEEEEecCC
Q 044030 215 V-MSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 215 i-~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
+ ...++.+.+ .|. ++|++||+.
T Consensus 129 l~~~il~~l~~-~~~--~~i~~TH~~ 151 (204)
T cd03282 129 ISLAILECLIK-KES--TVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHh-cCC--EEEEECChH
Confidence 5 456777764 455 999999995
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=8.7e-17 Score=157.86 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=62.9
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 175 RRLSGGQKRRVSISIEIL---------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~---------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
.-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|++++ . ++|.++|. ..+..
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q--~ii~~~~~--~~~~~ 253 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----Q--TFVTTTDL--ADFDA 253 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----C--EEEEeCCc--hhccc
Confidence 558999999999999985 6999999999999999999999999998652 2 55555444 35667
Q ss_pred hc---CeEEEeeCCeE
Q 044030 246 LF---HNLCLLSAGQT 258 (449)
Q Consensus 246 ~~---D~v~~l~~G~i 258 (449)
+| ++++.+++|++
T Consensus 254 ~~~~~~~i~~l~~g~i 269 (270)
T cd03242 254 LWLRRAQIFRVDAGTL 269 (270)
T ss_pred hhccCccEEEEeCcEE
Confidence 77 68999999986
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.70 E-value=3.6e-17 Score=155.38 Aligned_cols=159 Identities=17% Similarity=0.111 Sum_probs=107.0
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
+.+.+|++++.++ ++++|+||||||||||||+|++..-. |. .|.........++|+.| +++.+++.++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhh
Confidence 4588999999888 99999999999999999999875421 11 12222112235666654 5677788777
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC---CCCCCHHHH
Q 044030 136 VYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP---TSGLDSAAS 212 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP---tsgLD~~~~ 212 (449)
+..+.. .- ..|.++++-+.+.+.+|++++|||| |+++|....
T Consensus 86 ls~g~s--------~f---------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~ 130 (216)
T cd03284 86 LAGGRS--------TF---------------------------MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI 130 (216)
T ss_pred hccCcc--------hH---------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Confidence 743310 00 1122233333334579999999999 888887552
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 213 YYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 213 ~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
...+++.+.+..+. ++|++||+. ++.+++|++..+.+|++...+..+++
T Consensus 131 --~~~il~~l~~~~~~--~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 131 --AWAIVEYLHEKIGA--KTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred --HHHHHHHHHhccCC--cEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 23344555433355 999999994 67889999888888998887766554
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.64 E-value=5.6e-16 Score=151.51 Aligned_cols=137 Identities=27% Similarity=0.310 Sum_probs=93.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c---cCcEEEEcCCCCCCCCCCHHHHHHHHHhcc
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A---YGTSAYVTQDDTLITTLTVKEAVYYSAQLQ 143 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 143 (449)
.-++|+||||||||||+++|+|.++++ +|+|.++|+++.. . ...+++++|.+ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 578999999999999999999999874 8999999987531 1 12456777754 334555554421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 044030 144 LPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223 (449)
Q Consensus 144 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~ 223 (449)
+. . | ........+|+++++|||++ ...+..+++.+.
T Consensus 182 ------k~------~---------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~ 217 (270)
T TIGR02858 182 ------KA------E---------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH 217 (270)
T ss_pred ------HH------H---------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh
Confidence 00 0 1 12233346999999999974 334555555553
Q ss_pred hhcCCCeEEEEEecCCcHH-H-----------HhhcCeEEEeeCCeEEEecChhh
Q 044030 224 QRDGIGRTIIASIHQPSSE-V-----------FQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 224 ~~~g~g~tii~~tH~~~~~-i-----------~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
.| .++|+++|++..+ + ..+||++++|++|+ ..|.+++
T Consensus 218 --~G--~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 218 --AG--VSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred --CC--CEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 34 4999999985321 2 26689999999887 5565543
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.64 E-value=1.1e-15 Score=152.99 Aligned_cols=180 Identities=21% Similarity=0.308 Sum_probs=138.1
Q ss_pred cccceeeeeeEEEecC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCC
Q 044030 54 GSSSILEDLTGYAKPG-----HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~G-----e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~ 128 (449)
+.+.-+-+..+.|+.| |++..+|.||.|||||+++++|+++|+ ..|+|-. -.++|=||...-=.
T Consensus 347 ~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~p~---------lnVSykpqkispK~ 415 (592)
T KOG0063|consen 347 KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEIPV---------LNVSYKPQKISPKR 415 (592)
T ss_pred cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCcccc---------cceeccccccCccc
Confidence 3445667777777766 688999999999999999999999886 2344422 13678888755444
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD 208 (449)
.-||++.+.--.+- .-...+.+.++++-|.+++..|+-+.+|||||.|||++|..|=..+++++.|||.+-||
T Consensus 416 ~~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylD 488 (592)
T KOG0063|consen 416 EGTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLD 488 (592)
T ss_pred cchHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcC
Confidence 55888877432111 11123457788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 209 ~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
+..+...-..+++.-=... +|-.++.||.. -.--++||+++..
T Consensus 489 SeQRi~AskvikRfilhak--ktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 489 SEQRIIASKVIKRFILHAK--KTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred hHHHHHHHHHHHHHHHhcc--chhhhhhhHHH-HHHhhcceeEEEe
Confidence 9999998888888653333 49999999953 3334788888764
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.63 E-value=1.2e-16 Score=148.08 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=65.0
Q ss_pred cCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM-SRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 164 lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
+++.+..++....+|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++.+. ++|++||++ +
T Consensus 49 ~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~--~iii~TH~~--~ 123 (185)
T smart00534 49 IGASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGA--LTLFATHYH--E 123 (185)
T ss_pred eCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEEecHH--H
Confidence 44444556667788988887433332 24599999999999999999877764 556777643355 999999995 5
Q ss_pred HHhhcCeEEEeeCCeEEEe
Q 044030 243 VFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 243 i~~~~D~v~~l~~G~iv~~ 261 (449)
+.+++|+.--+..+++...
T Consensus 124 l~~~~~~~~~v~~~~~~~~ 142 (185)
T smart00534 124 LTKLADEHPGVRNLHMSAD 142 (185)
T ss_pred HHHHhhcCccceEEEEEEE
Confidence 7888886444444544433
No 419
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.56 E-value=1.1e-14 Score=138.40 Aligned_cols=88 Identities=25% Similarity=0.399 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCe
Q 044030 155 ERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230 (449)
Q Consensus 155 ~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ 230 (449)
..+.+.+...++... .||||||.+++||.-|+ ...++++||||.++||...+..+.++|+++.+ +.
T Consensus 121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~----~~ 190 (220)
T PF02463_consen 121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK----QS 190 (220)
T ss_dssp HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT----TS
T ss_pred ccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccc----cc
Confidence 445556666655432 89999999999987664 36789999999999999999999999999874 23
Q ss_pred EEEEEecCCcHHHHhhcCeEEEee
Q 044030 231 TIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 231 tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
-+|++||++ .++..+|+.+.+.
T Consensus 191 Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 191 QFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp EEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccc--ccccccccccccc
Confidence 799999994 6899999887764
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.55 E-value=4.3e-13 Score=136.95 Aligned_cols=77 Identities=18% Similarity=0.345 Sum_probs=65.3
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 175 RRLSGGQKRRVSISIEIL---------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~---------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
..+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+++.|.++ +. .+++++|++. .+..
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~--qv~it~~~~~-~~~~ 344 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GA--QVFITTTDLE-DLAD 344 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CC--EEEEEcCChh-hhhh
Confidence 579999999999999886 699999999999999999999999988764 22 7888999853 4555
Q ss_pred hc--CeEEEeeCCeE
Q 044030 246 LF--HNLCLLSAGQT 258 (449)
Q Consensus 246 ~~--D~v~~l~~G~i 258 (449)
.+ ++++.+++|++
T Consensus 345 ~~~~~~i~~v~~G~i 359 (361)
T PRK00064 345 LLENAKIFHVEQGKI 359 (361)
T ss_pred hhccCcEEEEeCCEE
Confidence 54 47899999986
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.54 E-value=9.5e-15 Score=161.54 Aligned_cols=129 Identities=24% Similarity=0.318 Sum_probs=90.7
Q ss_pred eeeEEEecC-eEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecccccCcEEEEcCCCC-CCCCCCHHHHHH
Q 044030 61 DLTGYAKPG-HLLAIMGPSGSGKTTLLDALAGRL-GSDTRQTGKILINGHKKALAYGTSAYVTQDDT-LITTLTVKEAVY 137 (449)
Q Consensus 61 ~vs~~i~~G-e~~~IlGpnGaGKSTLL~~l~G~~-~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~ 137 (449)
.+|+.+.++ ++++|.||||+|||||||+|+|.. .+ ..| .+||.... .++ +.+.+.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a---q~G----------------~~Vpa~~~~~~~---~~d~i~ 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF---QSG----------------IPIPANEHSEIP---YFEEIF 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH---HhC----------------CCccCCcccccc---chhhee
Confidence 378888887 999999999999999999999872 22 122 13333321 111 111110
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-H
Q 044030 138 YSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV-M 216 (449)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i-~ 216 (449)
. .++...........+|+|+++++.|++++ .+|+++|+|||++|+|+.....+ .
T Consensus 371 --~----------------------~i~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~ 425 (771)
T TIGR01069 371 --A----------------------DIGDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAI 425 (771)
T ss_pred --e----------------------ecChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHH
Confidence 0 00111112233567999999999998876 79999999999999999999998 5
Q ss_pred HHHHHHHhhcCCCeEEEEEecCC
Q 044030 217 SRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 217 ~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
.++..+.+ .|. ++|++||+.
T Consensus 426 aiLe~l~~-~g~--~viitTH~~ 445 (771)
T TIGR01069 426 SILEYLLK-QNA--QVLITTHYK 445 (771)
T ss_pred HHHHHHHh-cCC--EEEEECChH
Confidence 67888874 455 999999995
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.53 E-value=7.8e-14 Score=132.24 Aligned_cols=131 Identities=24% Similarity=0.239 Sum_probs=85.7
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEecccccCcEEEEcCCCCCC-CCCCHHH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG--RLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI-TTLTVKE 134 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G--~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~-~~lTv~e 134 (449)
+=+|+++.=..+.+++|.||||+|||||||.|+. .+ + ..|...... ...++|..|....+ ...++.+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a---~~G~~v~a~------~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-A---HIGSFVPAD------SATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-H---hCCCeeEcC------CcEEeeeeeeeeeeCCccChhh
Confidence 3444544322237999999999999999999984 22 1 245443321 12366766653221 1112221
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS--GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS--gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~ 212 (449)
+ +| .-|.||++++++++.+|+++++|||++|+|+...
T Consensus 88 ~-----------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 88 G-----------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred c-----------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 1 12 3467899999999999999999999999999765
Q ss_pred HHH-HHHHHHHHhhcCCCeEEEEEecCC
Q 044030 213 YYV-MSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 213 ~~i-~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
..+ ...++++.+....+.++|++||++
T Consensus 127 ~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 127 AGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 444 568888875311013899999996
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.45 E-value=1.2e-13 Score=115.95 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=59.1
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTL 130 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~l 130 (449)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.+... ..+.++|++|+ +++ -
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-I 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-h
Confidence 46899999999999999999999999999999985 5889999987521 22446777777 444 4
Q ss_pred CHHHHHHHH
Q 044030 131 TVKEAVYYS 139 (449)
Q Consensus 131 Tv~e~l~~~ 139 (449)
|++|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999874
No 424
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=1.3e-12 Score=124.55 Aligned_cols=139 Identities=18% Similarity=0.220 Sum_probs=88.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR-LGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~-~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
..+.+|+++.+.+|++++|+||||+||||++++|++. +.+ ..|....... . .++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a~~-~-----~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPASS-A-----TLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEcCc-e-----EEeccce---EEEEecCcc
Confidence 4689999999999999999999999999999999993 333 3565433211 1 1222221 111111111
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS--GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS--gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~ 212 (449)
++. .++| ..|-+|++-+..-+.+|+++|+|||.+|.|+...
T Consensus 86 ~~~-------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 86 SIQ-------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred ccc-------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 110 0111 1233344444445568999999999999997777
Q ss_pred HHH-HHHHHHHHhhcCCCeEEEEEecCCcHHHHhhc
Q 044030 213 YYV-MSRIAKLGQRDGIGRTIIASIHQPSSEVFQLF 247 (449)
Q Consensus 213 ~~i-~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~ 247 (449)
..+ ..+++.+.+..+. ++|++||++ ++..+.
T Consensus 129 ~~i~~~il~~l~~~~~~--~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 129 IAIAYATLHYLLEEKKC--LVLFVTHYP--SLGEIL 160 (222)
T ss_pred HHHHHHHHHHHHhccCC--eEEEEcccH--HHHHHH
Confidence 764 5677777754355 999999996 344544
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.42 E-value=4.3e-13 Score=134.61 Aligned_cols=174 Identities=24% Similarity=0.343 Sum_probs=121.3
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEEC------CEecccccCc-------EEEEcCCCCCCCC-
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR--QTGKILIN------GHKKALAYGT-------SAYVTQDDTLITT- 129 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~--~~G~I~~~------g~~~~~~~~~-------i~yv~Q~~~l~~~- 129 (449)
-+||++.+++|.||-||||-|++++|.++|... ..+-.+-+ |-.+..-+.+ .-.=||.-..+|.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 358999999999999999999999999987411 01111111 1000000000 0000111111110
Q ss_pred --CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 044030 130 --LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207 (449)
Q Consensus 130 --lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgL 207 (449)
.+|.+++ .....+....++++.+.|....++-+..|||||-||.+||++.+++.++.++|||.+-|
T Consensus 177 ~k~~v~~~l------------~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 177 VKGTVGSLL------------DRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred HHHHHHHHH------------HHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 1222222 11222335677888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|...+..-...|+.+... .. =||++.||.+ -+.-+.|-+.+|..
T Consensus 245 DVKQRLkaA~~IRsl~~p-~~--YiIVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 245 DVKQRLKAAITIRSLINP-DR--YIIVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred hHHHhhhHHHHHHHhhCC-CC--eEEEEEeech-HHHhhhcceeEEec
Confidence 999999999999999843 33 8999999974 55567888888873
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.41 E-value=3.5e-13 Score=127.46 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPT-----SGLDSAASYYVMSRIAKLGQ 224 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPt-----sgLD~~~~~~i~~~l~~l~~ 224 (449)
|-|++++.||++++.+|+++++|||| +|||+..+..+.+.++++++
T Consensus 155 ~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 155 NFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred CHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 33999999999999999999999999 99999999999999999973
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.39 E-value=5.5e-12 Score=131.08 Aligned_cols=175 Identities=19% Similarity=0.227 Sum_probs=111.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec---c------c----ccCcEEEEc
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK---A------L----AYGTSAYVT 121 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~---~------~----~~~~i~yv~ 121 (449)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. . . ..+.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 999999999999999999999999999998764 79999976532 1 1 124577887
Q ss_pred CCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh-HHHHHHHHHHHHHhCCCEEEE
Q 044030 122 QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG-GQKRRVSISIEILTRPKLLFL 200 (449)
Q Consensus 122 Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg-GerqRv~ia~aL~~~P~llll 200 (449)
+.+.-.. .+....+.+ -.+.+.+..-|-+-.. ...+++- -|-+ |++. +.+
T Consensus 221 ~~~~~~~---~r~~~~~~a--------------~~iAEyfr~~g~~Vll--~~Dsltr~A~A~-----rEis-----l~~ 271 (438)
T PRK07721 221 TSDQPAL---MRIKGAYTA--------------TAIAEYFRDQGLNVML--MMDSVTRVAMAQ-----REIG-----LAV 271 (438)
T ss_pred CCCCCHH---HHHHHHHHH--------------HHHHHHHHHCCCcEEE--EEeChHHHHHHH-----HHHH-----Hhc
Confidence 6443210 011111110 0111222211211000 0011110 0001 1110 112
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHhhcCCCe-----EEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 201 DEP--TSGLDSAASYYVMSRIAKLGQRDGIGR-----TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 201 DEP--tsgLD~~~~~~i~~~l~~l~~~~g~g~-----tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
.|| |+|+|+.....+.+++.++.+. +.|. ||++.+||.. ..+||++..+.+|+++..++..+
T Consensus 272 ge~P~~~G~dp~~~~~l~~ller~~~~-~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 272 GEPPTTKGYTPSVFAILPKLLERTGTN-ASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CCCCccccCCHHHHHHHHHHHHHhcCC-CCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 454 7899999999999999999742 2264 9999999975 38899999999999999998754
No 428
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.39 E-value=3.5e-13 Score=149.55 Aligned_cols=150 Identities=18% Similarity=0.243 Sum_probs=96.8
Q ss_pred eeEEEe-cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 044030 62 LTGYAK-PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSA 140 (449)
Q Consensus 62 vs~~i~-~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 140 (449)
.++.+. .+.++.|.|||++||||+||.++...-- ...| .|||-... ..+++.+++
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~m--aq~G----------------~~vpa~~~--~~i~~~~~i---- 374 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALM--AKSG----------------LPIPANEP--SEIPVFKEI---- 374 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHH--HHhC----------------CCcccCCC--ccccccceE----
Confidence 344444 4578999999999999999999753200 0011 13433310 011122222
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HH
Q 044030 141 QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS-RI 219 (449)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~-~l 219 (449)
+..+|-..........+|+||++++.|++++ .+|+++|+|||++|+|+.....+.. ++
T Consensus 375 --------------------~~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~ail 433 (782)
T PRK00409 375 --------------------FADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISIL 433 (782)
T ss_pred --------------------EEecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHH
Confidence 1112222333455678999999999999988 8999999999999999999988865 56
Q ss_pred HHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 220 AKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 220 ~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
..+.+ .|. ++|++||++ ......+|+..++ ++.+.+.
T Consensus 434 e~l~~-~~~--~vIitTH~~-el~~~~~~~~~v~-~~~~~~d 470 (782)
T PRK00409 434 EYLRK-RGA--KIIATTHYK-ELKALMYNREGVE-NASVEFD 470 (782)
T ss_pred HHHHH-CCC--EEEEECChH-HHHHHHhcCCCeE-EEEEEEe
Confidence 77764 455 999999995 3334445544443 4555553
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.37 E-value=1.3e-12 Score=140.85 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=69.0
Q ss_pred CCCChHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 175 RRLSGGQKRRVSISIEILTR----PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~----P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
+.+||||+||++||++++.. |+++||||||+|||+.++..+.+.|+++++ +. +||++||+| .+...||++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~--~vi~iTH~~--~~~~~ad~~ 512 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RH--QVLCVTHLP--QVAAHADAH 512 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CC--EEEEEEChH--HHHHhcCeE
Confidence 46899999999999999986 699999999999999999999999999973 44 999999997 345789999
Q ss_pred EEeeCCe
Q 044030 251 CLLSAGQ 257 (449)
Q Consensus 251 ~~l~~G~ 257 (449)
++|++|.
T Consensus 513 ~~l~k~~ 519 (563)
T TIGR00634 513 FKVEKEG 519 (563)
T ss_pred EEEEEcc
Confidence 9999864
No 430
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=2.4e-12 Score=148.14 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=78.0
Q ss_pred CCchhhCccCCCCChHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEE
Q 044030 165 GLQDAMNTRIRRLSGGQKRRVSISIEILT----------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIA 234 (449)
Q Consensus 165 gL~~~~~~~~~~LSgGerqRv~ia~aL~~----------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~ 234 (449)
++....+++++.|||||++||+||+||+. +|++||+||||+|||+.+...+++.|..++. .|+ +|++
T Consensus 939 ~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~--~i~i 1015 (1042)
T TIGR00618 939 DAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSK--MIGI 1015 (1042)
T ss_pred eCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEE
Confidence 34456677889999999999999999986 7999999999999999999999999999985 555 9999
Q ss_pred EecCCcHHHHhhcCeEEEeeCC
Q 044030 235 SIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 235 ~tH~~~~~i~~~~D~v~~l~~G 256 (449)
+||++ .....++|+|.|++.|
T Consensus 1016 isH~~-~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1016 ISHVP-EFRERIPHRILVKKTN 1036 (1042)
T ss_pred EeCcH-HHHHhhCCEEEEEECC
Confidence 99996 5788999999999754
No 431
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.34 E-value=2.3e-12 Score=139.03 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=68.9
Q ss_pred cCCCCChHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 173 RIRRLSGGQKRRVSISIEIL----------TRPKLLFLDEPT-SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 173 ~~~~LSgGerqRv~ia~aL~----------~~P~llllDEPt-sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
.+..||||||||++||++|+ .+|+++|||||| ++||+.....+.+.|+.+ + |. |||++||++
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~--~iiiish~~-- 537 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DT--NVFVISHKD-- 537 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CC--eEEEEECch--
Confidence 45789999999999999987 599999999998 789999999999999988 2 34 999999996
Q ss_pred HHHhhcCeEEEeeC-CeE
Q 044030 242 EVFQLFHNLCLLSA-GQT 258 (449)
Q Consensus 242 ~i~~~~D~v~~l~~-G~i 258 (449)
.....||++++|.+ |+.
T Consensus 538 ~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 538 HDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred hchhhhhcEEEEEEECCe
Confidence 35678999999986 554
No 432
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.34 E-value=2.3e-12 Score=122.52 Aligned_cols=137 Identities=19% Similarity=0.195 Sum_probs=87.3
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
...+-+|+++..++|++++|.||||+||||+++++++..-.. ..| -........+++ -+.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G------~~vpa~~~~i~~---~~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMG------MDVPAKSMRLSL---VDRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcC------CccCccccEecc---ccEEEEecCccc
Confidence 356889999999999999999999999999999999863210 011 111000001111 122222222333
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
++..+. + .+ ..|.++++-....+.+|+++++|||++|+|+.....
T Consensus 85 ~~~~~~--------S--------------------------tF-~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~ 129 (218)
T cd03286 85 DIMKGE--------S--------------------------TF-MVELSETANILRHATPDSLVILDELGRGTSTHDGYA 129 (218)
T ss_pred ccccCc--------c--------------------------hH-HHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence 331110 0 00 023344444444457899999999999999999998
Q ss_pred HHHH-HHHHHhhcCCCeEEEEEecCC
Q 044030 215 VMSR-IAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 215 i~~~-l~~l~~~~g~g~tii~~tH~~ 239 (449)
+... ++.+.+..+. ++|++||++
T Consensus 130 la~ail~~L~~~~~~--~~i~~TH~~ 153 (218)
T cd03286 130 IAHAVLEYLVKKVKC--LTLFSTHYH 153 (218)
T ss_pred HHHHHHHHHHHhcCC--cEEEEeccH
Confidence 8888 7777754366 999999996
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=99.34 E-value=3.4e-12 Score=136.93 Aligned_cols=76 Identities=24% Similarity=0.408 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 176 RLSGGQKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 176 ~LSgGerqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +. +||++||+| .+..+||+.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~--qvi~iTH~~--~~~~~ad~~~ 503 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--ST--QVMCVTHLP--QVAGCGHQHF 503 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CC--EEEEEecCH--HHHHhCCEEE
Confidence 589999999999999997 5899999999999999999999999999973 34 999999997 3668999999
Q ss_pred EeeCCe
Q 044030 252 LLSAGQ 257 (449)
Q Consensus 252 ~l~~G~ 257 (449)
++.++.
T Consensus 504 ~v~k~~ 509 (553)
T PRK10869 504 FVSKET 509 (553)
T ss_pred EEeccc
Confidence 998753
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.30 E-value=9.9e-12 Score=120.34 Aligned_cols=178 Identities=16% Similarity=0.187 Sum_probs=101.7
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE--CCEe-ccc--cc---CcEEEEcCCCCCCCCCCH---
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI--NGHK-KAL--AY---GTSAYVTQDDTLITTLTV--- 132 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~--~g~~-~~~--~~---~~i~yv~Q~~~l~~~lTv--- 132 (449)
+.+.+|+.++|+||+|+|||||++.|++..... .....+++ -+.+ .+. .. ..+-.+.+-+. .+...+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~ 88 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVA 88 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHH
Confidence 468899999999999999999999999977542 11223222 2221 110 00 11222222222 111000
Q ss_pred HHHHHHHHhccC-CCCC--CHHHHHHHHHHHHHHcCCchhhCccCCCCChHH--------HHHHHHHHHHHhCCCEEEEe
Q 044030 133 KEAVYYSAQLQL-PDTM--PKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ--------KRRVSISIEILTRPKLLFLD 201 (449)
Q Consensus 133 ~e~l~~~~~~~~-~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe--------rqRv~ia~aL~~~P~llllD 201 (449)
+.-+..+..++. +... --++. .+..+..+.+ .......+|||+ +||+++|+++..+++|.+|
T Consensus 89 ~~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~ev-----~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 89 EMVLEKAKRLVEHGKDVVILLDSI-TRLARAYNTV-----VPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhhc-----cccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 111111111100 0000 00000 0111111211 222235689999 9999999999999999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 202 EPTSGLDSAASYY-VMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 202 EPtsgLD~~~~~~-i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||+.+|+.+... ++ +..+.. .+ .|.|+.+|+.. ....+|.|.+|+.|.+
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~-~~--~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKG-TG--NMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred -eeheecCCCcccchH--HHHHhc-CC--CcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 999999654443 44 455442 33 39999999963 5678999999999987
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.30 E-value=2.6e-11 Score=111.64 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=98.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHH
Q 044030 72 LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS 151 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~ 151 (449)
+.|.||+|+|||||.-.++-.... +| ..+.|+.= +.|..+.+.....+ +.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----------~g-------~~v~~~s~------e~~~~~~~~~~~~~----g~~~- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----------RG-------EPGLYVTL------EESPEELIENAESL----GWDL- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----------CC-------CcEEEEEC------CCCHHHHHHHHHHc----CCCh-
Confidence 679999999999988655431100 12 12334431 23455554443333 1111
Q ss_pred HHHHHHHHHHHHcCCchhhCccCCCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHH
Q 044030 152 DKKERAEVTIREMGLQDAMNTRIRRLSGGQKR------RVSISIEILTRPKLLFLDEPTSGLD---SAASYYVMSRIAKL 222 (449)
Q Consensus 152 ~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq------Rv~ia~aL~~~P~llllDEPtsgLD---~~~~~~i~~~l~~l 222 (449)
+ .+...|+....+..+..+|+|++| +.....+...+|+++++|||++.+| ......+.+.++.+
T Consensus 54 ------~-~l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l 126 (187)
T cd01124 54 ------E-RLEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL 126 (187)
T ss_pred ------H-HHHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH
Confidence 1 123345555677888899999998 5555555677999999999999999 88888889999998
Q ss_pred HhhcCCCeEEEEEecCCcH--------HHHhhcCeEEEee
Q 044030 223 GQRDGIGRTIIASIHQPSS--------EVFQLFHNLCLLS 254 (449)
Q Consensus 223 ~~~~g~g~tii~~tH~~~~--------~i~~~~D~v~~l~ 254 (449)
++. |. |+|+++|+... .+..+||.++.|+
T Consensus 127 ~~~-g~--tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 127 KRF-GV--TTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHC-CC--EEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 754 54 99999998542 2677899999887
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.29 E-value=2.4e-11 Score=116.55 Aligned_cols=150 Identities=19% Similarity=0.165 Sum_probs=90.6
Q ss_pred EEecCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhcc
Q 044030 65 YAKPGHLLAIMGPSGSGKTTL-LDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQ 143 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTL-L~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 143 (449)
-+++|++++|.|||||||||| ++++++..+++ ..+.|+.. ..|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g------------------~~~~yi~~------e~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG------------------YSVSYVST------QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC------------------CcEEEEeC------CCCHHHHHHHHHHhC
Confidence 389999999999999999999 78998865431 11345442 224555554443321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----CHHHHHHH
Q 044030 144 LPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGL----DSAASYYV 215 (449)
Q Consensus 144 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgL----D~~~~~~i 215 (449)
... ++.... +.-...+-. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.....+
T Consensus 76 ----~~~-------~~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l 142 (230)
T PRK08533 76 ----YDI-------NKKLIS-GKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL 142 (230)
T ss_pred ----Cch-------HHHhhc-CcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH
Confidence 111 111110 100011111 236777655544444332 369999999999999 88888899
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCcH------HHHhhcCeEEEee
Q 044030 216 MSRIAKLGQRDGIGRTIIASIHQPSS------EVFQLFHNLCLLS 254 (449)
Q Consensus 216 ~~~l~~l~~~~g~g~tii~~tH~~~~------~i~~~~D~v~~l~ 254 (449)
++.++.+++. |. |+++++|.... .+..++|-|+.|+
T Consensus 143 ~~~l~~l~~~-g~--tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 143 MAFFKRISSL-NK--VIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHhC-CC--EEEEEecccccccccceeEEEeeeEEEEEE
Confidence 9999999754 44 77776554210 1234567777776
No 437
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.29 E-value=3.6e-12 Score=120.38 Aligned_cols=62 Identities=27% Similarity=0.488 Sum_probs=52.3
Q ss_pred CCCChHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 175 RRLSGGQKRRVSISIEILTRP---KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~P---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
..+|.|++|.+.++..+...+ .++++|||-++|+|..+..+++.|+..++ .+. -||++||.|
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~--QviitTHSp 299 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNI--QVIITTHSP 299 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSS--EEEEEES-G
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCC--EEEEeCccc
Confidence 567999999999999888877 89999999999999999999999998875 344 899999997
No 438
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.25 E-value=1e-10 Score=125.80 Aligned_cols=137 Identities=20% Similarity=0.332 Sum_probs=105.6
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHH------HHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCC--CE
Q 044030 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT------IREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRP--KL 197 (449)
Q Consensus 127 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P--~l 197 (449)
+..|++.+.+.|...+.+.. ......+..+.++ |-.+||... +++....|||||.||+-+|..+=.+= =+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVl 504 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 504 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeE
Confidence 45678888888877665321 1111122222333 334588753 68888999999999999999997653 47
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHHH
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAANE 269 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~~ 269 (449)
++||||+-||-+..-..+++.|++|.+ .|- |+|++.||+ ++...+|+|+=| +.|+|++.|++++++.
T Consensus 505 YVLDEPSIGLHqrDn~rLi~tL~~LRD-lGN--TviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 505 YVLDEPSIGLHQRDNERLIETLKRLRD-LGN--TVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHh-cCC--eEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 899999999999999999999999984 555 999999994 688899999987 4689999999998864
No 439
>PRK13695 putative NTPase; Provisional
Probab=99.24 E-value=4.8e-12 Score=115.99 Aligned_cols=83 Identities=11% Similarity=0.161 Sum_probs=65.1
Q ss_pred CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcC
Q 044030 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP--TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP--tsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D 248 (449)
.+.+..+||+++-+..+++..+.+|+++++||| +.++|. .+.+.+.++. +.+. ++|+++|+. .+...+|
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~-~~~~--~~i~v~h~~--~~~~~~~ 143 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVL-DSEK--PVIATLHRR--SVHPFVQ 143 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHH-hCCC--eEEEEECch--hhHHHHH
Confidence 344567999999999999999999999999995 445543 3456666665 3444 999999983 5678899
Q ss_pred eEEEeeCCeEEEec
Q 044030 249 NLCLLSAGQTVYFG 262 (449)
Q Consensus 249 ~v~~l~~G~iv~~g 262 (449)
++..+.+|++...-
T Consensus 144 ~i~~~~~~~i~~~~ 157 (174)
T PRK13695 144 EIKSRPGGRVYELT 157 (174)
T ss_pred HHhccCCcEEEEEc
Confidence 99999999987653
No 440
>PRK03918 chromosome segregation protein; Provisional
Probab=99.21 E-value=3.1e-11 Score=136.89 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=68.9
Q ss_pred CccCCCCChHHHHH------HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 171 NTRIRRLSGGQKRR------VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 171 ~~~~~~LSgGerqR------v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
+.++..|||||+++ +++|++++.+|++++|||||+|||+..+..+.+.|..++.. +. +||++||++ ++.
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~-~~--~iiiith~~--~~~ 857 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK-IP--QVIIVSHDE--ELK 857 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc-CC--EEEEEECCH--HHH
Confidence 45678999999994 55556788999999999999999999999999999998743 44 999999996 467
Q ss_pred hhcCeEEEeeC
Q 044030 245 QLFHNLCLLSA 255 (449)
Q Consensus 245 ~~~D~v~~l~~ 255 (449)
..||++++|..
T Consensus 858 ~~~d~~~~l~~ 868 (880)
T PRK03918 858 DAADYVIRVSL 868 (880)
T ss_pred HhCCeEEEEEe
Confidence 89999999983
No 441
>PRK01156 chromosome segregation protein; Provisional
Probab=99.19 E-value=1.2e-10 Score=132.32 Aligned_cols=81 Identities=23% Similarity=0.230 Sum_probs=68.1
Q ss_pred ccCCCCChHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 172 TRIRRLSGGQKRRVSI------SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 172 ~~~~~LSgGerqRv~i------a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
..+..|||||++|++| |++++.+|++++|||||+|||+.....+.++|+...+..+...+||++||++ +...
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~ 874 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLS 874 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHH
Confidence 4578999999999976 4889999999999999999999999999999986543332013899999996 3568
Q ss_pred hcCeEEEee
Q 044030 246 LFHNLCLLS 254 (449)
Q Consensus 246 ~~D~v~~l~ 254 (449)
.||+++.+.
T Consensus 875 ~~d~ii~~~ 883 (895)
T PRK01156 875 VADVAYEVK 883 (895)
T ss_pred hcCeEEEEE
Confidence 999999997
No 442
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.17 E-value=8.4e-11 Score=117.66 Aligned_cols=141 Identities=22% Similarity=0.210 Sum_probs=95.1
Q ss_pred eeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-cccc-cCcEEEEcCCCC-CCCCCCHHHHHHH
Q 044030 62 LTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-KALA-YGTSAYVTQDDT-LITTLTVKEAVYY 138 (449)
Q Consensus 62 vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-~~~~-~~~i~yv~Q~~~-l~~~lTv~e~l~~ 138 (449)
+++.++.|+.++|.||+|||||||+++|++.+++. .|.+.+.+.. .... ...+.++.+... -....|..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~----- 208 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPK----- 208 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHH-----
Confidence 55778899999999999999999999999998764 5777775422 1111 112222222100 00011111
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 044030 139 SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218 (449)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~ 218 (449)
-.+..+|-.+|+++++|||.+ .++++.
T Consensus 209 ----------------------------------------------~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~ 235 (308)
T TIGR02788 209 ----------------------------------------------DLLQSCLRMRPDRIILGELRG-------DEAFDF 235 (308)
T ss_pred ----------------------------------------------HHHHHHhcCCCCeEEEeccCC-------HHHHHH
Confidence 124456778999999999996 345667
Q ss_pred HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 219 l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
++.+. . | +.+++.++|..+ +....||+..|..|++...|.+.+..
T Consensus 236 l~a~~-~-g-~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 236 IRAVN-T-G-HPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHh-c-C-CCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 77765 3 3 226799999964 67779999999999998888776654
No 443
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.16 E-value=1.2e-10 Score=133.97 Aligned_cols=82 Identities=26% Similarity=0.250 Sum_probs=70.6
Q ss_pred hCccCCCCChHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 170 MNTRIRRLSGGQKRRVSISIEILT--------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 170 ~~~~~~~LSgGerqRv~ia~aL~~--------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
.++++..|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+++ .|+ ||+++||.. .
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~--~v~iisH~~-~ 1018 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGK--TIGVISHVE-A 1018 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCC--EEEEEecHH-H
Confidence 457889999999999999999996 8999999999999999999999999999984 455 999999974 4
Q ss_pred HHHhhcCeEEEeeC
Q 044030 242 EVFQLFHNLCLLSA 255 (449)
Q Consensus 242 ~i~~~~D~v~~l~~ 255 (449)
...++-.+|.|-..
T Consensus 1019 l~~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1019 MKERIPVQIKVKKI 1032 (1047)
T ss_pred HHHhccceEEEEEC
Confidence 45556667777654
No 444
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.15 E-value=7.8e-10 Score=124.04 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=59.1
Q ss_pred HhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH---------hhcCeEEEeeCCeEEEe
Q 044030 192 LTRPKLLFLDEPTSGL-DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF---------QLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 192 ~~~P~llllDEPtsgL-D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~---------~~~D~v~~l~~G~iv~~ 261 (449)
..+|+++++|||+.+| |+..+..+.+.++.+++ .|. +++++||++. ++. +.||.+++|.+|++...
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~--~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~ 725 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANC--AVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREP 725 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCcccccc
Confidence 5799999999999999 79999999999999975 454 9999999975 443 68999999999998776
Q ss_pred cCh
Q 044030 262 GPA 264 (449)
Q Consensus 262 g~~ 264 (449)
|..
T Consensus 726 ~~~ 728 (818)
T PRK13830 726 GTR 728 (818)
T ss_pred chH
Confidence 644
No 445
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=2.7e-10 Score=133.90 Aligned_cols=72 Identities=22% Similarity=0.230 Sum_probs=62.8
Q ss_pred cCCCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----hcCCCeEEEEEecCCcHH
Q 044030 173 RIRRLSGGQKR------RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ----RDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 173 ~~~~LSgGerq------Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~----~~g~g~tii~~tH~~~~~ 242 (449)
..+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. ..| .+||++||++ ..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~--~~viiitHd~-~~ 1272 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN--FQLLVITHDE-DF 1272 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccC--CeEEEEecCH-HH
Confidence 44789999999 99999999999999999999999999999999999988742 124 4999999996 56
Q ss_pred HHhhc
Q 044030 243 VFQLF 247 (449)
Q Consensus 243 i~~~~ 247 (449)
+..+|
T Consensus 1273 ~~~~~ 1277 (1311)
T TIGR00606 1273 VELLG 1277 (1311)
T ss_pred HHHHh
Confidence 77775
No 446
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.08 E-value=2.2e-10 Score=102.01 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=46.0
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 176 RLSGGQKRRVSISIEILTRPKLLFLDEPTS----------GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 176 ~LSgGerqRv~ia~aL~~~P~llllDEPts----------gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
..+.++.++...+.+...+|+++++|||++ +.|......+.+++.... +.+. |+|+++|.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~--~vv~~~~~~~~ 139 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR-KGGV--TVIFTLQVPSG 139 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-cCCc--eEEEEEecCCc
Confidence 445566667888889999999999999995 445555566655555553 4555 99999998753
No 447
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.08 E-value=4.7e-10 Score=116.02 Aligned_cols=168 Identities=17% Similarity=0.164 Sum_probs=115.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
++-++++.. +. .+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+..
T Consensus 131 ~~r~~i~~~-l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg------- 194 (432)
T PRK06793 131 FEREEITDV-FE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG------- 194 (432)
T ss_pred hheechhhc-cC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc-------
Confidence 455556544 21 235688885 999999999999999999999999999988663 67776666421
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHH----
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEIL---- 192 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~---- 192 (449)
.+|.|.+...... -++.. ..=....+-|.|+|+|+..+.+.+
T Consensus 195 ------------~ev~e~~~~~l~~---------------------~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 195 ------------REVKDFIRKELGE---------------------EGMRKSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred ------------ccHHHHHHHHhhh---------------------cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 3666665422110 11110 011233678999999999988888
Q ss_pred ---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 193 ---TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 193 ---~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
.++-++++|+||+..|+. .+|-..+.+... .| .+..+.+|. . .+ ++|.-...+|.+...+..
T Consensus 242 r~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G--~~~~~~s~l-~-~L---~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GG--KTLLMESYM-K-KL---LERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CC--eeeeeeccc-h-hH---HHHhccCCCcceEEEEEE
Confidence 789999999999999996 555555555542 24 488888884 2 33 444444578888776543
No 448
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.07 E-value=1.9e-10 Score=133.57 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=69.3
Q ss_pred hhCccCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 169 AMNTRIRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 169 ~~~~~~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
..+..+..||||||+|++||++++ ..|+++||||||+|||+.+...+.++|+.+++ +. +||++||++. ..
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~--~~i~~sh~~~--~~ 1155 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NT--QFIVITHNKG--TM 1155 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CC--EEEEEEcChh--HH
Confidence 346677899999999999999985 56799999999999999999999999999874 23 8999999974 45
Q ss_pred hhcCeEEEee
Q 044030 245 QLFHNLCLLS 254 (449)
Q Consensus 245 ~~~D~v~~l~ 254 (449)
..||+++.+.
T Consensus 1156 ~~~d~~~~~~ 1165 (1179)
T TIGR02168 1156 EVADQLYGVT 1165 (1179)
T ss_pred HHhhhHeeee
Confidence 7899998765
No 449
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.01 E-value=4.9e-09 Score=95.54 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=56.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeE
Q 044030 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNL 250 (449)
Q Consensus 172 ~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v 250 (449)
......|-||-=---+.+. .++.-+++||||-++|.|.-+..++..|+++++. |. -+||.||.|. +..+ --.|
T Consensus 125 ~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-Ga--Q~IiATHSPi--LlAiP~A~I 198 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADS-GA--QIIIATHSPI--LLAIPGAEI 198 (233)
T ss_pred cchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CC--eEEEEecChh--heeCCCcEE
Confidence 3345678888654333333 4567899999999999999999999999999954 44 8999999983 3322 2344
Q ss_pred EEeeCC
Q 044030 251 CLLSAG 256 (449)
Q Consensus 251 ~~l~~G 256 (449)
+-++.+
T Consensus 199 ~~~~~~ 204 (233)
T COG3910 199 YEISES 204 (233)
T ss_pred EEEecC
Confidence 445544
No 450
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.99 E-value=1.2e-08 Score=97.98 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=97.0
Q ss_pred cceeeee-eEEEecCeEEEEECCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 56 SSILEDL-TGYAKPGHLLAIMGPSGSGKTTLLDALA-GRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 56 ~~iL~~v-s~~i~~Ge~~~IlGpnGaGKSTLL~~l~-G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
..-|+.+ .+=+++|.++.|.|++|||||||...++ +... +| ..+.|+..+. +..
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----------~g-------~~~~y~~~e~------~~~ 66 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-----------QG-------KKVYVITTEN------TSK 66 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-----------CC-------CEEEEEEcCC------CHH
Confidence 3445554 5679999999999999999999998875 2111 11 1244554421 233
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh--CCCEEEEeCCCCC---CC
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT--RPKLLFLDEPTSG---LD 208 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~--~P~llllDEPtsg---LD 208 (449)
+.+.-...+. ....+. .... .+.+-+..-......|.++++.+..+..++. +|+++++||||+. .|
T Consensus 67 ~~~~~~~~~g----~~~~~~--~~~g---~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~ 137 (234)
T PRK06067 67 SYLKQMESVK----IDISDF--FLWG---YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAE 137 (234)
T ss_pred HHHHHHHHCC----CChhHH--HhCC---CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCC
Confidence 3332221111 110000 0000 0111111111223457788999999999998 9999999999965 44
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH------HHHhhcCeEEEeeC
Q 044030 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS------EVFQLFHNLCLLSA 255 (449)
Q Consensus 209 ~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~------~i~~~~D~v~~l~~ 255 (449)
......+++.++.+++ .|. |+++++|+... .+..++|-++.|+.
T Consensus 138 ~~~~~~~l~~l~~l~~-~g~--tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 138 EDDILNFLTEAKNLVD-LGK--TILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHHHh-CCC--EEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 5555555566766664 444 99999998542 14567777777763
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.97 E-value=1.7e-09 Score=113.48 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=96.1
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
.++++.+..+++|++++++||||+||||++..|++.+... .|. +.++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3566777788899999999999999999999999976431 231 2467888876 346899999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH-HHHHHHHHHhCC-----CEEEEeCCCCCCCHH
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR-RVSISIEILTRP-----KLLFLDEPTSGLDSA 210 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq-Rv~ia~aL~~~P-----~llllDEPtsgLD~~ 210 (449)
.+.+.... .+........+......++.+.....+.+...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~---- 378 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG---- 378 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH----
Confidence 98776542 221111222334445567766656666665444443 234455555555 68999999887
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEec
Q 044030 211 ASYYVMSRIAKLGQRDGIGRTIIASIH 237 (449)
Q Consensus 211 ~~~~i~~~l~~l~~~~g~g~tii~~tH 237 (449)
..+.+.++.+.. .+. +-++.|+
T Consensus 379 --~~l~~i~~~f~~-~~~--~g~IlTK 400 (484)
T PRK06995 379 --DTLNEVVQAYRG-PGL--AGCILTK 400 (484)
T ss_pred --HHHHHHHHHhcc-CCC--CEEEEeC
Confidence 334445555542 333 4344444
No 452
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.97 E-value=3.1e-09 Score=99.63 Aligned_cols=119 Identities=18% Similarity=0.339 Sum_probs=72.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc-CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY-GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMP 149 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 149 (449)
+++|.||+||||||++++|++.+.+. ..|.|.....+..... ...+++.|...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~~~~~i~q~~v------------------------ 56 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHESKRSLINQREV------------------------ 56 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccCccceeeeccc------------------------
Confidence 78999999999999999999877542 2466655443322110 01111111100
Q ss_pred HHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 044030 150 KSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229 (449)
Q Consensus 150 ~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g 229 (449)
|.. ...++ =+++++|..+|+++++|||. |......++ +.+ ..|.
T Consensus 57 ---------------g~~------~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a-~~G~- 100 (198)
T cd01131 57 ---------------GLD------TLSFE------NALKAALRQDPDVILVGEMR---DLETIRLAL----TAA-ETGH- 100 (198)
T ss_pred ---------------CCC------ccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHH-HcCC-
Confidence 000 00111 13778899999999999996 555433333 344 3454
Q ss_pred eEEEEEecCCcHHHHhhcCeEEEee
Q 044030 230 RTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 230 ~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
.++.++|.++ +...+||++.+.
T Consensus 101 -~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 101 -LVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred -EEEEEecCCc--HHHHHhHHHhhc
Confidence 9999999974 457789987774
No 453
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.96 E-value=1.1e-09 Score=127.53 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=69.0
Q ss_pred CccCCCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh
Q 044030 171 NTRIRRLSGGQKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL 246 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~ 246 (449)
.+.+..||||||++++||++|+. .|+++|||||+++||+..+..+.++|+.+++ +. .+|++||++ .+...
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~--~~i~~t~~~--~~~~~ 1142 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EA--QFIVVSLRS--PMIEY 1142 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CC--eEEEEECcH--HHHHh
Confidence 34567999999999999999985 6799999999999999999999999999863 23 899999996 46789
Q ss_pred cCeEEEeeC
Q 044030 247 FHNLCLLSA 255 (449)
Q Consensus 247 ~D~v~~l~~ 255 (449)
||+++.+..
T Consensus 1143 ~d~~~~~~~ 1151 (1164)
T TIGR02169 1143 ADRAIGVTM 1151 (1164)
T ss_pred cceeEeEEE
Confidence 999988764
No 454
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.96 E-value=4.5e-09 Score=101.31 Aligned_cols=136 Identities=26% Similarity=0.433 Sum_probs=84.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT 147 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g-~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 147 (449)
|.+..|+||+|+|||||.-.++=-. .+|.=++.+ ... .....+.|+.-++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v-----a~G~~~~g~~~~~-~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM-----ALGKNLFGGGLKV-TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH-----hcCccccCCcccc-CCCceEEEEECCC-----------------------
Confidence 6788999999999999987776322 123211211 111 0112344544221
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH----------------HHHhCCCEEEEeCCCC------
Q 044030 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI----------------EILTRPKLLFLDEPTS------ 205 (449)
Q Consensus 148 ~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~----------------aL~~~P~llllDEPts------ 205 (449)
+..+..+++..+...+++.+..++... .+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~ 127 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVS 127 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCC
Confidence 122334455555555554433333221 245555554443 335799999999 775
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
.+|+.....+++.|++++++.|. +||+++|..
T Consensus 128 ~~d~~~~~~~~~~L~~~a~~~g~--avl~v~H~~ 159 (239)
T cd01125 128 ENDNGAMDAVIKALRRIAAQTGA--AILLVHHVR 159 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCC--EEEEEeccC
Confidence 47999999999999999977766 999999985
No 455
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.92 E-value=8.2e-10 Score=114.36 Aligned_cols=50 Identities=22% Similarity=0.400 Sum_probs=44.4
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEec
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG-KILINGHKK 110 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G-~I~~~g~~~ 110 (449)
..+|++||+++++||+++|+|||||||||||+ +|+..|. +| +|.++|.+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEEC
Confidence 46899999999999999999999999999999 6776653 55 899999875
No 456
>PRK02224 chromosome segregation protein; Provisional
Probab=98.90 E-value=3.4e-09 Score=120.34 Aligned_cols=78 Identities=26% Similarity=0.377 Sum_probs=66.0
Q ss_pred CCCCChHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 174 IRRLSGGQKR------RVSISIEILTR-----P-KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 174 ~~~LSgGerq------Rv~ia~aL~~~-----P-~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
+..||||||+ |++++++++.+ | +++|+||||++||+.....+.++|+.+++. |. .+||++||++.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~-~~-~qviiish~~~- 855 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL-GV-EQIVVVSHDDE- 855 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc-CC-CeEEEEECChH-
Confidence 5799999999 89999998864 3 679999999999999999999999999743 31 27999999963
Q ss_pred HHHhhcCeEEEeeC
Q 044030 242 EVFQLFHNLCLLSA 255 (449)
Q Consensus 242 ~i~~~~D~v~~l~~ 255 (449)
....||+++.|..
T Consensus 856 -~~~~ad~~~~~~~ 868 (880)
T PRK02224 856 -LVGAADDLVRVEK 868 (880)
T ss_pred -HHHhcCeeEEeec
Confidence 4568999999964
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.81 E-value=1.7e-07 Score=80.00 Aligned_cols=119 Identities=30% Similarity=0.449 Sum_probs=76.7
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT 147 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 147 (449)
++..+.|.||+|+||||+++.|+..+... ..+-+.++...... . +..+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~----------------~-~~~~~~----------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILE----------------E-VLDQLL----------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccc----------------c-CHHHHH-----------
Confidence 36789999999999999999999987542 11344444432110 0 000000
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-----HHHHH
Q 044030 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS-----RIAKL 222 (449)
Q Consensus 148 ~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~-----~l~~l 222 (449)
............+++..+..+..+--.+|.++++||+..-.+......... .....
T Consensus 51 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~ 111 (148)
T smart00382 51 -------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLL 111 (148)
T ss_pred -------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHH
Confidence 111122234567777777777777777799999999999999998887765 22232
Q ss_pred HhhcCCCeEEEEEec
Q 044030 223 GQRDGIGRTIIASIH 237 (449)
Q Consensus 223 ~~~~g~g~tii~~tH 237 (449)
....+. .+|+++|
T Consensus 112 ~~~~~~--~~i~~~~ 124 (148)
T smart00382 112 KSEKNL--TVILTTN 124 (148)
T ss_pred HhcCCC--EEEEEeC
Confidence 223333 8899988
No 458
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.81 E-value=1.9e-09 Score=114.32 Aligned_cols=166 Identities=16% Similarity=0.195 Sum_probs=101.5
Q ss_pred ceeeee-eEEEecCeEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEecc--c--ccCcEEEEcCCCCCCCC
Q 044030 57 SILEDL-TGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKA--L--AYGTSAYVTQDDTLITT 129 (449)
Q Consensus 57 ~iL~~v-s~~i~~Ge~~~IlGpnGaGKSTLL~~l--~G~~~~~~~~~G~I~~~g~~~~--~--~~~~i~yv~Q~~~l~~~ 129 (449)
.-|+.+ .+=+++|..+.|.||+|||||||...+ .|....+ +.-+++...... . ..+..||-.++..--
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~-- 82 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDE-- 82 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc--
Confidence 346664 567999999999999999999998766 3443221 233444332210 0 011223222210000
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH--HHHHhCCCEEEEeCCCCCC
Q 044030 130 LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS--IEILTRPKLLFLDEPTSGL 207 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia--~aL~~~P~llllDEPtsgL 207 (449)
+++.+ . ..... .....+++.+++.+..++....+|+|++|||.|+ .+|...|+..
T Consensus 83 ----g~l~~---~----~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~--------- 139 (484)
T TIGR02655 83 ----GKLFI---L----DASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV--------- 139 (484)
T ss_pred ----CceEE---E----ecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch---------
Confidence 00000 0 00000 0111244566777788888899999999999999 6666666543
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH-------H-HhhcCeEEEee
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE-------V-FQLFHNLCLLS 254 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~-------i-~~~~D~v~~l~ 254 (449)
...+..++++++.+++ .|. |+|+++|++... + ..+||.|+.|+
T Consensus 140 -~~~r~~l~~Li~~L~~-~g~--TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -SVVRREIFRLVARLKQ-IGV--TTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -HHHHHHHHHHHHHHHH-CCC--EEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5677889999998874 455 999999986320 2 55889999987
No 459
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.78 E-value=5.9e-09 Score=97.39 Aligned_cols=113 Identities=17% Similarity=0.258 Sum_probs=70.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK 150 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 150 (449)
+++|.||||||||||.++|++.+. .|.+ .++++++.. ..++..+......... ..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~~--------------~v~~~D~~~-~~~~~~~~~~~~~~~~---~~~~ 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPKV--------------VIISQDSYY-KDLSHEELEERKNNNY---DHPD 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCCe--------------EEEEecccc-cccccccHHHhccCCC---CCCC
Confidence 589999999999999999999762 2222 233333222 1122222221111000 1111
Q ss_pred HHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 151 SDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 151 ~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
....+...+.+..+......+.+..+.|.|++++..+ .+.+|+++|+|.|+.+.++
T Consensus 58 ~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1112334556676766666677888999999876655 5788999999999999986
No 460
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.76 E-value=8.7e-09 Score=106.76 Aligned_cols=175 Identities=18% Similarity=0.191 Sum_probs=110.5
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-----------cccCcEEEEcCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-----------LAYGTSAYVTQD 123 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-----------~~~~~i~yv~Q~ 123 (449)
+..+++++ +.+.+|+.++|+||||||||||+++|+|...++...-|.|-.+|.+.. ..+..++|++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 999999999999999999999999999988764222355545543321 112358999999
Q ss_pred CCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH-HHHHHHHHhCCCEEEEeC
Q 044030 124 DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR-VSISIEILTRPKLLFLDE 202 (449)
Q Consensus 124 ~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR-v~ia~aL~~~P~llllDE 202 (449)
...+..+++.+++.+.+..+...+. .|--+++ .+...+ +-+| +++ .+-|
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~-------~Vll~~D--sltr~a----------~A~REisl-----------~~ge 270 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGH-------DVLLLVD--SLTRYA----------MAQREIAL-----------SLGE 270 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccC-------CEEEeec--chhHHH----------hhhhHHHH-----------hcCC
Confidence 9999999999999887765421110 0000000 011110 0011 111 1235
Q ss_pred C--CCCCCHHHHHHHHHHHHHHHhhc--CCCeEEEEEecCCcHHH-HhhcCeEEEeeCCeEEEe
Q 044030 203 P--TSGLDSAASYYVMSRIAKLGQRD--GIGRTIIASIHQPSSEV-FQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 203 P--tsgLD~~~~~~i~~~l~~l~~~~--g~g~tii~~tH~~~~~i-~~~~D~v~~l~~G~iv~~ 261 (449)
| +.|-.+..-..+-+++.+..+-. | ..|.+.+..-+.+++ ..++|.+.-+-+|+|+..
T Consensus 271 ~P~~~Gyp~svf~~l~~l~ERag~~~~~G-SIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 271 PPATKGYPPSAFSIIPRLAESAGNSSGNG-TMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred CCcccCcCHHHHHHhHHHHHHhhcCCCCE-EeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 4 34777777777777777764322 3 357676665543332 346788888889999874
No 461
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.74 E-value=1.6e-07 Score=98.09 Aligned_cols=174 Identities=18% Similarity=0.209 Sum_probs=105.1
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc------------c-cCcEEEEc
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL------------A-YGTSAYVT 121 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~------------~-~~~i~yv~ 121 (449)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.+...|..... . .+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 46799999 999999999999999999999999999988664 6666665543110 0 11222332
Q ss_pred CCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh-HHHHHHHHHHHHHhCCCEEEE
Q 044030 122 QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG-GQKRRVSISIEILTRPKLLFL 200 (449)
Q Consensus 122 Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg-GerqRv~ia~aL~~~P~llll 200 (449)
+.+. ++.+-. .+ ....-.+.+.+...|-+-.. .+.+|+- -|-+| ++. +.+
T Consensus 226 ~~d~-----~p~~r~--~~----------~~~a~t~AE~frd~G~~Vll--~~DslTr~A~A~R-----Eis-----l~~ 276 (440)
T TIGR01026 226 TSDQ-----SPLLRL--KG----------AYVATAIAEYFRDQGKDVLL--LMDSVTRFAMAQR-----EIG-----LAA 276 (440)
T ss_pred CCCC-----CHHHHH--HH----------HHHHHHHHHHHHHCCCCEEE--EEeChHHHHHHHH-----HHH-----Hhc
Confidence 2221 111111 00 00011122233222321000 0022221 11111 111 234
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHhhcCCCe-------EEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 201 DEP--TSGLDSAASYYVMSRIAKLGQRDGIGR-------TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 201 DEP--tsgLD~~~~~~i~~~l~~l~~~~g~g~-------tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
.|| +.|+|+.....+.+++.+.... +. ||++.+||.. ..++|++..+.+|+++......+.
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~---~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGAS---GKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccC---CCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhhC
Confidence 675 5599999999999999998743 34 7788888863 468999999999999999876543
No 462
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.67 E-value=2.9e-08 Score=92.10 Aligned_cols=82 Identities=24% Similarity=0.203 Sum_probs=60.2
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-ccc-cCcEEEEcCCC--CCCCCCCHH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-ALA-YGTSAYVTQDD--TLITTLTVK 133 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~-~~~-~~~i~yv~Q~~--~l~~~lTv~ 133 (449)
..+=+.+.+++|+.++|+||||||||||+++|+|+++++ .|.|.+.+... ... ...++++.|.. ...+..++.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 444456678999999999999999999999999998764 79999987532 111 23455655543 346678888
Q ss_pred HHHHHHHhc
Q 044030 134 EAVYYSAQL 142 (449)
Q Consensus 134 e~l~~~~~~ 142 (449)
+.+..+.+.
T Consensus 91 ~~l~~~lR~ 99 (186)
T cd01130 91 DLLRSALRM 99 (186)
T ss_pred HHHHHHhcc
Confidence 888776553
No 463
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.67 E-value=4.2e-08 Score=110.48 Aligned_cols=139 Identities=20% Similarity=0.206 Sum_probs=86.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
..|-+|+++. +.+.++.|.|||++||||+||.++-..-- ...| +|||-+..-+ .+.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il--Aq~G----------------~~VPa~~a~i---~~~d~ 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL--AQIG----------------SFVPAESARI---GIVDR 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH--HhcC----------------CceeccceEe---cccCe
Confidence 3466777777 67889999999999999999998753200 0011 2333322111 11111
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh--CCCEEEEeCC---CCCCCHH
Q 044030 136 VYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT--RPKLLFLDEP---TSGLDSA 210 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~--~P~llllDEP---tsgLD~~ 210 (449)
+ ...+|- .|....++|.=+.....++..|-. +++++|+||| |+.+|..
T Consensus 653 I------------------------~triga---~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~ 705 (854)
T PRK05399 653 I------------------------FTRIGA---SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL 705 (854)
T ss_pred e------------------------eeccCc---ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH
Confidence 1 111111 223345667666666666666544 8999999999 8888844
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 211 ASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 211 ~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
+ ..+.+++.+.+..+. ++|++||.. ++..++++
T Consensus 706 a--ia~aile~l~~~~~~--~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 706 S--IAWAVAEYLHDKIGA--KTLFATHYH--ELTELEEK 738 (854)
T ss_pred H--HHHHHHHHHHhcCCc--eEEEEechH--HHHHHhhh
Confidence 3 455666777644345 899999993 67788775
No 464
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.66 E-value=1.2e-07 Score=96.37 Aligned_cols=124 Identities=19% Similarity=0.364 Sum_probs=76.6
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc-CcEEEEcCCCCCCCCCCHHHHHHHHHhccC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY-GTSAYVTQDDTLITTLTVKEAVYYSAQLQL 144 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~ 144 (449)
..++.++.|.||+||||||+|++|.+.+... ..|.|.....+..... ...+.+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp~E~~~~~~~~~i~q~e-------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDPIEYVHRNKRSLINQRE-------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCChhhhccCccceEEccc--------------------
Confidence 3578999999999999999999999876431 2466655443322110 0001111100
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 044030 145 PDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224 (449)
Q Consensus 145 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~ 224 (449)
.|.. ..+ -.-+++.+|-.+|+++++||+. |+.++...++ .+
T Consensus 177 -------------------vg~~--------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa- 217 (343)
T TIGR01420 177 -------------------VGLD--------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT----AA- 217 (343)
T ss_pred -------------------cCCC--------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HH-
Confidence 0000 000 1123556888999999999997 8888765444 33
Q ss_pred hcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 225 ~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
..|. +|+.++|-.+ .....+|++-|-
T Consensus 218 ~tGh--~v~~T~Ha~~--~~~~~~Rl~~~~ 243 (343)
T TIGR01420 218 ETGH--LVFGTLHTNS--AAQTIERIIDVF 243 (343)
T ss_pred HcCC--cEEEEEcCCC--HHHHHHHHHHhc
Confidence 3455 9999999864 456778887653
No 465
>PRK14079 recF recombination protein F; Provisional
Probab=98.65 E-value=5.5e-08 Score=99.08 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 175 RRLSGGQKRRVSISIEIL---------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~---------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+++.|.... . ++|.+|+.+ .
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q--~~it~t~~~-----~ 330 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----Q--AIVAGTEAP-----P 330 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----c--EEEEcCCCC-----C
Confidence 468999999999999999 8999999999999999999999998886532 2 566555543 5
Q ss_pred hcCeEEEeeCCeEEEec
Q 044030 246 LFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 246 ~~D~v~~l~~G~iv~~g 262 (449)
.+|+++.+.+|++.-..
T Consensus 331 ~~~~~~~~~~~~~~~~~ 347 (349)
T PRK14079 331 GAALTLRIEAGVFTPEA 347 (349)
T ss_pred CCceEEEEeccEecCCC
Confidence 79999999998875433
No 466
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=5.8e-08 Score=99.41 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=54.6
Q ss_pred CCCChHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 175 RRLSGGQKRRVSISIEILT---------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~---------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
..+|.||+|++.||.+|+. +|+|+|||||+++||+..+..+++.|... |. +|++++|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~--qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GV--QVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CC--EEEEEecChh
Confidence 4799999999999999999 99999999999999999999999999753 44 8999999863
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.62 E-value=7.7e-07 Score=100.56 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=52.8
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh--hcCeEEEeeCCeEE
Q 044030 187 ISIEILTRPKLLFLDEPTSGL-DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ--LFHNLCLLSAGQTV 259 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgL-D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~--~~D~v~~l~~G~iv 259 (449)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++ .|. +++++||++. ++.. .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~--~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANC--LVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 567788899999999999999 79999999999999985 454 9999999975 4544 33434333444444
No 468
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.61 E-value=4.5e-08 Score=93.52 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=28.0
Q ss_pred ceeeee-eEEEecCeEEEEECCCCCcHHHHHHHHH
Q 044030 57 SILEDL-TGYAKPGHLLAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 57 ~iL~~v-s~~i~~Ge~~~IlGpnGaGKSTLL~~l~ 90 (449)
.-|+.+ .+=+++|++++|.||+|||||||...++
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 345553 5679999999999999999999988655
No 469
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.61 E-value=1.3e-07 Score=107.80 Aligned_cols=80 Identities=28% Similarity=0.328 Sum_probs=69.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHh------C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHH
Q 044030 172 TRIRRLSGGQKRRVSISIEILT------R--PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV 243 (449)
Q Consensus 172 ~~~~~LSgGerqRv~ia~aL~~------~--P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i 243 (449)
..+..|||||+-.++||.+|+. + -+++||||||..||+.....++++|..+... +. +|++|||++ ++
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~--qiiIISH~e--el 885 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GR--QIIIISHVE--EL 885 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CC--eEEEEeChH--HH
Confidence 4668999999999888887654 5 6999999999999999999999999999854 55 999999994 68
Q ss_pred HhhcCeEEEeeCC
Q 044030 244 FQLFHNLCLLSAG 256 (449)
Q Consensus 244 ~~~~D~v~~l~~G 256 (449)
...+|.++.++..
T Consensus 886 ~e~~~~~i~V~k~ 898 (908)
T COG0419 886 KERADVRIRVKKD 898 (908)
T ss_pred HHhCCeEEEEEec
Confidence 8899999998743
No 470
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.56 E-value=1.8e-07 Score=97.18 Aligned_cols=189 Identities=19% Similarity=0.163 Sum_probs=109.7
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC---Ee
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---HK 109 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g---~~ 109 (449)
.++..++.++++..| . .+..+++.++ .+.+||.++|+||||||||||+++|+++..++ .|.|.+.| .+
T Consensus 135 ~~p~~~~r~~v~~~l-~----TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergre 205 (450)
T PRK06002 135 TAPPAMTRARVETGL-R----TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGRE 205 (450)
T ss_pred CCCCCeEeecceEEc-C----CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCcc
Confidence 344457888998873 2 3467899996 99999999999999999999999999998764 79888865 33
Q ss_pred cc---------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh-
Q 044030 110 KA---------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG- 179 (449)
Q Consensus 110 ~~---------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg- 179 (449)
.. ...+.+++|+|.+.-.. .+-...+.+ -.+.+.+..-|-+-.. .+.+|+-
T Consensus 206 v~e~~~~~l~~~r~rtI~vV~qsd~~~~---~r~~~~~~a--------------~~iAEyfrd~G~~Vll--~~DslTr~ 266 (450)
T PRK06002 206 VREFLEDTLADNLKKAVAVVATSDESPM---MRRLAPLTA--------------TAIAEYFRDRGENVLL--IVDSVTRF 266 (450)
T ss_pred HHHHhHHHHHHhhCCeEEEEEcCCCCHH---HHHHHHHHH--------------HHHHHHHHHcCCCEEE--eccchHHH
Confidence 21 11246899999875211 011111100 0011111111111000 0011110
Q ss_pred HHHHH-HHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhh---cCCCeEEEEEecCCcHHH-HhhcCeEEE
Q 044030 180 GQKRR-VSISIEILTRPKLLFLDEP--TSGLDSAASYYVMSRIAKLGQR---DGIGRTIIASIHQPSSEV-FQLFHNLCL 252 (449)
Q Consensus 180 GerqR-v~ia~aL~~~P~llllDEP--tsgLD~~~~~~i~~~l~~l~~~---~g~g~tii~~tH~~~~~i-~~~~D~v~~ 252 (449)
-+-+| +++ .+.|| +.|--+..-..+-+++.+..+. .| ..|.+.+..-+.+++ ..++|.+.-
T Consensus 267 A~A~rEisl-----------~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~G-SIT~~~tvl~~~dd~~dpI~d~~~~ 334 (450)
T PRK06002 267 AHAAREVAL-----------AAGEPPVARGYPPSVFSELPRLLERAGPGAEGGG-SITGIFSVLVDGDDHNDPVADSIRG 334 (450)
T ss_pred HHHHHHHHH-----------hcCCCCccccCCccHHHHhhHHHHHhccCCCCCe-eeeEEEEEEecCCCCCCccHHHHHh
Confidence 01111 111 22454 3367777667777777776642 23 367777766554443 235777777
Q ss_pred eeCCeEEEe
Q 044030 253 LSAGQTVYF 261 (449)
Q Consensus 253 l~~G~iv~~ 261 (449)
+-+|+++..
T Consensus 335 i~Dg~ivLs 343 (450)
T PRK06002 335 TLDGHIVLD 343 (450)
T ss_pred hcceEEEEc
Confidence 888999875
No 471
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.55 E-value=1.9e-06 Score=84.31 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=84.9
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
+...|+.+.+-+.+|+++.|.||+|+|||||+..++..... ..| ..+.|+.-+. +..+
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~---~~g-------------~~vl~iS~E~------~~~~ 73 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLIT---QHG-------------VRVGTISLEE------PVVR 73 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHH---hcC-------------ceEEEEEccc------CHHH
Confidence 35678998889999999999999999999999887754311 001 1123332211 1222
Q ss_pred HHHHHHhc--cCCCCCC---HHHHHHHHHHHHHHcC-Cc--hhhCccCCCCChHHHHHHHHHHHHH--hCCCEEEEeCCC
Q 044030 135 AVYYSAQL--QLPDTMP---KSDKKERAEVTIREMG-LQ--DAMNTRIRRLSGGQKRRVSISIEIL--TRPKLLFLDEPT 204 (449)
Q Consensus 135 ~l~~~~~~--~~~~~~~---~~~~~~~v~~~l~~lg-L~--~~~~~~~~~LSgGerqRv~ia~aL~--~~P~llllDEPt 204 (449)
........ ..+.... .....+.+..+++.+. .. ...+. ....+ -..-+..++.++ .+|+++++|..+
T Consensus 74 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~-~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~ 150 (271)
T cd01122 74 TARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDS-FGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLS 150 (271)
T ss_pred HHHHHHHHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcC-CCccC--HHHHHHHHHHHHhcCCceEEEECCHH
Confidence 21111100 0000000 0111123333343331 11 11111 11112 234445555555 379999999976
Q ss_pred CCCCH-------H-HHHHHHHHHHHHHhhcCCCeEEEEEecC
Q 044030 205 SGLDS-------A-ASYYVMSRIAKLGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 205 sgLD~-------~-~~~~i~~~l~~l~~~~g~g~tii~~tH~ 238 (449)
.-.+. . ....++..|+.++++.+. ||++++|-
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~v--tvll~sq~ 190 (271)
T cd01122 151 IMVSDERASGDERKALDEIMTKLRGFATEHGI--HITLVSHL 190 (271)
T ss_pred HHhccCCCchhHHHHHHHHHHHHHHHHHHhCC--EEEEEecc
Confidence 64332 1 245677889999888876 99999985
No 472
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.47 E-value=2.3e-07 Score=109.31 Aligned_cols=64 Identities=20% Similarity=0.389 Sum_probs=54.5
Q ss_pred hCccCCCCChHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEec
Q 044030 170 MNTRIRRLSGGQKRRVS----ISIE--------ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237 (449)
Q Consensus 170 ~~~~~~~LSgGerqRv~----ia~a--------L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH 237 (449)
.++.+++||||||||++ +|++ +..+|++++|||||+|||+.+...+++++.++ +. ++|++||
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~--~~i~~s~ 1314 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DL--DFVMTSE 1314 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CC--CEEEEcc
Confidence 34556899999999996 5644 45799999999999999999999999999887 33 8999998
Q ss_pred CC
Q 044030 238 QP 239 (449)
Q Consensus 238 ~~ 239 (449)
..
T Consensus 1315 ~~ 1316 (1353)
T TIGR02680 1315 RE 1316 (1353)
T ss_pred ch
Confidence 73
No 473
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.44 E-value=4.9e-07 Score=105.56 Aligned_cols=166 Identities=21% Similarity=0.250 Sum_probs=90.2
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSA 140 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 140 (449)
=+++..+++++++|+|++|+|||||++++++.+... ..|.+++++........ .+-.++... .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~--~~~~~~~~~-------~~~~~-- 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSME--IYSSANPDD-------YNMKL-- 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchh--hcccccccc-------cchhH--
Confidence 356778899999999999999999999998876442 47899887632111000 000000000 00000
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044030 141 QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220 (449)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~ 220 (449)
...++.+.++++..++. +..+ ++.|+| |..++-+|+||+- |.. ..++.|.
T Consensus 266 ----------~l~~~~l~~il~~~~~~------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~ 315 (1153)
T PLN03210 266 ----------HLQRAFLSEILDKKDIK------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALA 315 (1153)
T ss_pred ----------HHHHHHHHHHhCCCCcc------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHH
Confidence 01122233444444331 2222 556655 3355667888984 332 3455555
Q ss_pred HHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEecChhhHHHHHHHCCC
Q 044030 221 KLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYFGPATAANEFFAFNGF 276 (449)
Q Consensus 221 ~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~ 276 (449)
...+..|.|.+||+|||+. ..+... +|+++.+.. -+.+++.+.|....+
T Consensus 316 ~~~~~~~~GsrIIiTTrd~-~vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDK-HFLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred hhCccCCCCcEEEEEeCcH-HHHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 4432223355999999995 333332 566655431 134567777766544
No 474
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.39 E-value=1.7e-07 Score=86.31 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=43.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc----cCcEEEEcCCCCCCCCCCHHHHHHH
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA----YGTSAYVTQDDTLITTLTVKEAVYY 138 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~----~~~i~yv~Q~~~l~~~lTv~e~l~~ 138 (449)
+||+++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++..++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998743 46777653211 1124556666544455555555443
No 475
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.37 E-value=8.9e-07 Score=92.15 Aligned_cols=170 Identities=16% Similarity=0.171 Sum_probs=99.2
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecc------c--ccCcEEEE---
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKA------L--AYGTSAYV--- 120 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~---~~~------~--~~~~i~yv--- 120 (449)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+.. ..|.|.+.|+ +.. . .....+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35689998 999999999999999999999999999987432 2477777553 221 1 11234555
Q ss_pred --cCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-----hhhCccCCCCChHHHHHHHHHHHH
Q 044030 121 --TQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-----DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 121 --~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
+|++. +.+.+ +...+.-..+.+....+...+...++.++++.++|. .....++..+|
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS------------- 293 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS------------- 293 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh-------------
Confidence 88753 33333 444443333322111112345567788888888883 33444444433
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEEecCCcHHH-HhhcCeEEEeeCCeEEEecCh
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ-RDGIGRTIIASIHQPSSEV-FQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~g~g~tii~~tH~~~~~i-~~~~D~v~~l~~G~iv~~g~~ 264 (449)
.+-+++.+..+ ..| ..|.|.+..-+.+++ ..++|.+.-+-+|+++..-..
T Consensus 294 ----------------------~l~~llERag~~~~G-SITai~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~l 345 (442)
T PRK06315 294 ----------------------TLPKLLERSGASDKG-TITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNAL 345 (442)
T ss_pred ----------------------HhHHHHHHhcCCCCc-ceeeeEEEEecCCCCCcccHHHhhhhcceEEEEeccH
Confidence 22233333221 122 245544443322221 346788888899999986543
No 476
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.34 E-value=8.5e-07 Score=78.70 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHH-----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 044030 155 ERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEIL-----TRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222 (449)
Q Consensus 155 ~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~-----~~P~llllDEPtsgLD~~~~~~i~~~l~~l 222 (449)
..+.+++...+.. -....++..++++++++........ ..|+++ |+|++|.....++++.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3455666666543 2234556778999988877665532 345555 99999999999999888764
No 477
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.33 E-value=2.3e-05 Score=88.33 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 190 EILTRPKLLFLDEPTSGLD-SAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD-~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
.+..+|.++++|||...|| +..+..+.+.++.+++ .|. .++++||++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~--~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNT--FVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCHH
Confidence 3456899999999999999 8999999999999974 454 8999999974
No 478
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.30 E-value=8.1e-07 Score=67.14 Aligned_cols=37 Identities=43% Similarity=0.590 Sum_probs=30.3
Q ss_pred eeeeeEEEec-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 59 LEDLTGYAKP-GHLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 59 L~~vs~~i~~-Ge~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
+++.++.+.+ |.++.|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4556777776 569999999999999999999876644
No 479
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.29 E-value=2.2e-06 Score=93.47 Aligned_cols=113 Identities=17% Similarity=0.231 Sum_probs=74.7
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDT-----RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL 142 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~-----~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 142 (449)
..+.++|+||||+|||||+++|.+...+.. ...+-|.++|...... .....+-.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d----------------~~~i~~~llg--- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD----------------PREVTNPLLG--- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC----------------HHHHhHHhcC---
Confidence 456799999999999999999998764310 0123355555322100 0000111111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044030 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAK 221 (449)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~ 221 (449)
.. .+...+.+.+.++..|+.+..+..+..+||| +||||| +..||+..+..+.+.|++
T Consensus 235 ----~~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 235 ----SV-HDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred ----Cc-cHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 01 1111233455678889988888889999999 999999 799999999999999975
No 480
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.29 E-value=1.5e-06 Score=71.08 Aligned_cols=51 Identities=31% Similarity=0.471 Sum_probs=39.4
Q ss_pred CccCCCCChHHH-HHHHHHHHHH------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044030 171 NTRIRRLSGGQK-RRVSISIEIL------T------RPKLLFLDEPTSGLDSAASYYVMSRIAK 221 (449)
Q Consensus 171 ~~~~~~LSgGer-qRv~ia~aL~------~------~P~llllDEPtsgLD~~~~~~i~~~l~~ 221 (449)
.+..+.+||||| ..+.++.+++ . .|.+++|||||++||+.....++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 456689999999 4444444432 2 3799999999999999999999999874
No 481
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.26 E-value=2.2e-06 Score=90.23 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=45.6
Q ss_pred hCCCEEEEeCCCCC----C-----CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH-------HHHhhcCeEEEeeCC
Q 044030 193 TRPKLLFLDEPTSG----L-----DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS-------EVFQLFHNLCLLSAG 256 (449)
Q Consensus 193 ~~P~llllDEPtsg----L-----D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~-------~i~~~~D~v~~l~~G 256 (449)
.+|+++++|.-++= + +......++..|.+++++.|. |+++++|...+ .+..++|.|+.|+.+
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~gi--Tvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~ 246 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGI--AIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 246 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCC--EEEEEeccccCCccCCcccEeeeceEEEEEecc
Confidence 47999999987542 1 123355667778888878766 99999997431 257789999999865
Q ss_pred e
Q 044030 257 Q 257 (449)
Q Consensus 257 ~ 257 (449)
+
T Consensus 247 ~ 247 (454)
T TIGR00416 247 R 247 (454)
T ss_pred C
Confidence 4
No 482
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.25 E-value=1.4e-05 Score=73.82 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCc-hhhCccCCCCChHHHHHHH--HHHHHHh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 044030 156 RAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVS--ISIEILT-RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224 (449)
Q Consensus 156 ~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~--ia~aL~~-~P~llllDEPtsgLD~~~~~~i~~~l~~l~~ 224 (449)
.+.++++..++. -..-.++..+|+|+++++. ++..+-. +++++ |+|++|......+.+.|.++.+
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 445566666664 3445567789999999987 4444433 34433 9999999999999999988764
No 483
>PRK01889 GTPase RsgA; Reviewed
Probab=98.23 E-value=2e-06 Score=87.88 Aligned_cols=106 Identities=22% Similarity=0.256 Sum_probs=69.2
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec--ccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK--ALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
++.+.-.+++|++++|+|+||+|||||+|+|+|...+ .+|+|.+++... ....+.+++++|...++++ +...++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~---~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ---KTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc---ceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 4555556789999999999999999999999998876 489999987432 1223568899998877764 444444
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCcc
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR 173 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 173 (449)
.+.... .. .......+.++.+.+.+.+|.+..
T Consensus 261 ~l~~~~---~~--l~~~f~~~~~~~~~c~f~~c~h~~ 292 (356)
T PRK01889 261 QLWDAE---DG--VEETFSDIEELAAQCRFRDCAHEA 292 (356)
T ss_pred cccCch---hh--HHHhHHHHHHHHccCCCCCCCCCC
Confidence 332100 00 111122345555666666665543
No 484
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.22 E-value=4.6e-05 Score=73.44 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=36.4
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhhcCCCeEEEEEecCCcHHHHhhcC
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMS-RIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D 248 (449)
+.+..++|+||+..|=++.....+.. .++.+.++.+. .+|++||.. ++.++.+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~--~~i~~TH~~--~l~~~~~ 173 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGC--FVIIATHFH--ELAELLE 173 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT---EEEEEES-G--GGGGHHH
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccc--cEEEEeccc--hhHHHhh
Confidence 34678999999999999998887654 44556643455 899999995 3555443
No 485
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.21 E-value=3.7e-05 Score=86.84 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=40.1
Q ss_pred HhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 192 LTRPKLLFLDEPTSGLD-SAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD-~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
-.+|+++++|||+.+|| +..+..+.+.++.+++ .|. +++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~--~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNV--SVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCC--EEEEEECCHH
Confidence 34899999999999999 7889999999999975 454 9999999974
No 486
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.17 E-value=2.3e-06 Score=79.29 Aligned_cols=71 Identities=10% Similarity=0.136 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH-HHHhhcCeEEEeeC
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS-EVFQLFHNLCLLSA 255 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~-~i~~~~D~v~~l~~ 255 (449)
|+-.|..||..+..+|+.+..+| +.+||.....+.+.+.+..+ .|. +||+.+|.+.. .+...||.++++..
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~-~~~--~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQS-KLA--YVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhc-CCC--EEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 88999999999999999988777 89999999999999988763 344 99999998632 26678999988764
No 487
>PRK08149 ATP synthase SpaL; Validated
Probab=98.16 E-value=2.8e-06 Score=88.17 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=100.3
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---------ccCcEEEEcCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---------AYGTSAYVTQDD 124 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---------~~~~i~yv~Q~~ 124 (449)
.+..+++++ +.+.+||.++|+|+||+|||||+++|++...++...-|.|-.+|.+... ..+++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 346799999 9999999999999999999999999999887653334889888876421 124577777654
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh-HHHHH-HHHHHHHHhCCCEEEEeC
Q 044030 125 TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG-GQKRR-VSISIEILTRPKLLFLDE 202 (449)
Q Consensus 125 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg-GerqR-v~ia~aL~~~P~llllDE 202 (449)
.-.+.+.+ ...+.+ ..+.+.+...|-+-.. .+.+|+- -+.+| ++ +.++|
T Consensus 216 d~p~~~r~--~a~~~a--------------~tiAE~fr~~G~~Vll--~~DslTr~A~A~rEi~-----------l~~ge 266 (428)
T PRK08149 216 DFSSVDRC--NAALVA--------------TTVAEYFRDQGKRVVL--FIDSMTRYARALRDVA-----------LAAGE 266 (428)
T ss_pred CCCHHHHH--hHHHHH--------------HHHHHHHHHcCCCEEE--EccchHHHHHHHHHhH-----------hhcCC
Confidence 43321100 000100 0111122222210000 0001110 00000 11 23456
Q ss_pred CCC--CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHH-HhhcCeEEEeeCCeEEEec
Q 044030 203 PTS--GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV-FQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 203 Pts--gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i-~~~~D~v~~l~~G~iv~~g 262 (449)
|-+ |-.+..-..+-+++.+..+..+-..|.+.+..-+.+++ ..++|.+.-+-+|+++..-
T Consensus 267 ~P~~~Gyp~~vfs~l~~l~ERag~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr 329 (428)
T PRK08149 267 LPARRGYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSR 329 (428)
T ss_pred CCcccccCccHHHHHHHHHHhccCCCCCCceEEEEEEecCCCCCCCchhhhheeccEEEEEcH
Confidence 544 66666666666666665432221357777665543332 3367888888899998753
No 488
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.16 E-value=1.8e-05 Score=68.19 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc--CCCeEEEEEecCC
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD--GIGRTIIASIHQP 239 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~--g~g~tii~~tH~~ 239 (449)
.+..........++.++++||.-.. ++.....+.+.+....... ..+.++|++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 4555556677788999999998765 5666777888888765310 1144899999864
No 489
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.15 E-value=4e-06 Score=85.62 Aligned_cols=75 Identities=27% Similarity=0.292 Sum_probs=45.8
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc----CcEEEEcCCCCCCCCCCHHHHHHHHHh
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY----GTSAYVTQDDTLITTLTVKEAVYYSAQ 141 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~----~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 141 (449)
++|.+++|.||+||||||+|++|++.+.+..+..+.|.....+..... ...+++.|...--...+..+.+.-+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 589999999999999999999999987432112335555444443211 224677776432112344555544433
No 490
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.13 E-value=8.5e-06 Score=83.61 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=43.9
Q ss_pred hCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc-------HHHHhhcCeEEEeeCC
Q 044030 193 TRPKLLFLDEPTS----GLD-----SAASYYVMSRIAKLGQRDGIGRTIIASIHQPS-------SEVFQLFHNLCLLSAG 256 (449)
Q Consensus 193 ~~P~llllDEPts----gLD-----~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~-------~~i~~~~D~v~~l~~G 256 (449)
.+|+++++|+-.+ .+| ......++..|.+++++.+. |+|++.|-.. ..+.+++|.|+.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~i--tvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNI--PIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCC--eEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 4899999999632 333 23345567778888877766 9999988522 1367889999988754
No 491
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.13 E-value=2.3e-06 Score=81.92 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=47.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeE----EEECCEeccc-ccCcEEEEcCCCCCCCCCCHHHHHHHHHh
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGK----ILINGHKKAL-AYGTSAYVTQDDTLITTLTVKEAVYYSAQ 141 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~----I~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 141 (449)
.+..++||.||||||||||.++|++.+++. .|. |.+++..... .....+++++.. .+..+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~---~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD---GELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc---cCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 456799999999999999999999998763 676 5555532211 112345665433 3355677666655444
Q ss_pred cc
Q 044030 142 LQ 143 (449)
Q Consensus 142 ~~ 143 (449)
++
T Consensus 107 l~ 108 (229)
T PRK09270 107 LR 108 (229)
T ss_pred HH
Confidence 43
No 492
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.11 E-value=4.6e-05 Score=78.41 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=64.5
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHhhcCCCeEEEEEecCC
Q 044030 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL-----DSAASYYV----------MSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~P~llllDEPtsgL-----D~~~~~~i----------~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
.+=||-.-|=.+|..||=...++||+||=||+- |...+..+ ++.++.+.++.|. +.|+++=-
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~Gv--StIlV~Gg- 397 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGV--STILVVGG- 397 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCc--eEEEEecc-
Confidence 467999999999999999999999999999975 55555544 6778888777765 65555555
Q ss_pred cHHHHhhcCeEEEeeCCeE
Q 044030 240 SSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 240 ~~~i~~~~D~v~~l~~G~i 258 (449)
+...+..+|+|++|++=+.
T Consensus 398 sgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 398 SGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred chhhHhhCCEEEEecCccc
Confidence 4678999999999997654
No 493
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.08 E-value=7.2e-06 Score=84.00 Aligned_cols=54 Identities=28% Similarity=0.312 Sum_probs=46.7
Q ss_pred eeEEEEeeEEEEeecCcccccceee-----------eeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILE-----------DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
-.+.|+||++.| + +.+.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+.
T Consensus 129 ~ri~Fe~LTf~Y-P----~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 129 NRVLFENLTPLY-P----NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCeEEEEeeecC-C----CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 358999999983 3 3456886 9999999999999999999999999999998653
No 494
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.07 E-value=5.6e-06 Score=83.16 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=97.7
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc---c----------ccCcEEEEc
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA---L----------AYGTSAYVT 121 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~---~----------~~~~i~yv~ 121 (449)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.+..-|++.. . ..+.+.++.
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~ 131 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIGERGREVREFIEKDLGEEGLKRSVVVVA 131 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEecCCccHHHHHHHHHhcCccceEEEEEc
Confidence 46799999 999999999999999999999999999998764 577766554211 0 012233333
Q ss_pred CCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEe
Q 044030 122 QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLD 201 (449)
Q Consensus 122 Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllD 201 (449)
+.+. ++.+.+.-+. ..-.+.+.+..-|-+-.. .+.+++ | .|+|+- -=-+.+.
T Consensus 132 t~d~-----~~~~r~~~~~------------~a~~~AEyfr~~g~~Vll--~~Dslt-----r--~a~A~r--ei~~~~g 183 (326)
T cd01136 132 TSDE-----SPLLRVKAAY------------TATAIAEYFRDQGKDVLL--LMDSLT-----R--FAMAQR--EIGLAAG 183 (326)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHcCCCeEE--Eeccch-----H--HHHHHH--HHHHhcC
Confidence 3222 1111111000 000011111111211000 001111 1 111110 0002234
Q ss_pred CC--CCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHH-HhhcCeEEEeeCCeEEEecCh
Q 044030 202 EP--TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV-FQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 202 EP--tsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i-~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|| ..|.++..-..+-+++.+..+..+-..|.|.+..-+.+++ ..++|.+.-+-+|+++..-..
T Consensus 184 e~p~~~gyp~~~~~~~~~l~ERag~~~~GSIT~i~tv~~~gdd~~dpi~~~~~~~~dg~ivL~r~l 249 (326)
T cd01136 184 EPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLNEPIADAVRSILDGHIVLSRAL 249 (326)
T ss_pred CCCCcCCcChHHHHHhHHHHHHhcCCCCCCeeeeeeeeecCCCCCcchHHhhhhccceEEEEcCcH
Confidence 65 5688888888887777776533221368887766554333 246778888889999886544
No 495
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.02 E-value=3.8e-06 Score=79.13 Aligned_cols=28 Identities=43% Similarity=0.624 Sum_probs=26.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
++|++++|.||||||||||+++|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999864
No 496
>PRK13764 ATPase; Provisional
Probab=98.01 E-value=4.4e-05 Score=82.45 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=47.3
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEec---------------CCcHHHHhhcCeEEEeeC
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH---------------QPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH---------------~~~~~i~~~~D~v~~l~~ 255 (449)
|..+|+++++||.-..-| ++.+..++ ..|. .++.+.| ++ ..+...+|+++.+++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~-~ag~--GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~ 389 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMR-LAGV--GMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIED 389 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHH-HcCC--eEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeC
Confidence 678999999999985332 44444444 3344 7999999 65 467789999999999
Q ss_pred CeE--EEecCh
Q 044030 256 GQT--VYFGPA 264 (449)
Q Consensus 256 G~i--v~~g~~ 264 (449)
|++ +|.+..
T Consensus 390 G~I~~v~~~~~ 400 (602)
T PRK13764 390 GEVSKVYDLEF 400 (602)
T ss_pred CEEEEEEeeee
Confidence 999 777653
No 497
>PLN02796 D-glycerate 3-kinase
Probab=98.01 E-value=2e-06 Score=86.61 Aligned_cols=55 Identities=27% Similarity=0.319 Sum_probs=44.8
Q ss_pred cceeeeeeEEE---ecCeE-----EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 56 SSILEDLTGYA---KPGHL-----LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 56 ~~iL~~vs~~i---~~Ge~-----~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
..+++.++..+ ++|+. +||.|+||||||||++.|.+.+.+.....|.|.+||...
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 45888999887 67776 999999999999999999999875322468888888643
No 498
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.00 E-value=9e-05 Score=70.52 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc--------HHHHhhcCeEEEee
Q 044030 194 RPKLLFLDEPTS------GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS--------SEVFQLFHNLCLLS 254 (449)
Q Consensus 194 ~P~llllDEPts------gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~--------~~i~~~~D~v~~l~ 254 (449)
+++++++| |.+ +.|...+..+.++++.++ +.|. |+++++|... ..+..+||.|++|+
T Consensus 107 ~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk-~~~~--tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 107 GASRVVID-PISLLETLFDDDAERRTELFRFYSSLR-ETGV--TTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred CCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHH-hCCC--EEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 68899999 433 445666778888998887 4555 9999999621 22567899999995
No 499
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.00 E-value=8.2e-06 Score=85.10 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=46.1
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
.+..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.|.+.|+.
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer 200 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGER 200 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccC
Confidence 346799999 999999999999999999999999999988764 7888888853
No 500
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.00 E-value=6.7e-06 Score=85.46 Aligned_cols=64 Identities=19% Similarity=0.362 Sum_probs=51.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
.++.++++.. +. .+..+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+.+.|+.
T Consensus 129 ~~~r~~v~~~-l~----tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d---~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQP-LM----TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD---SNVLVLIGER 192 (433)
T ss_pred ceeccCHhhe-eC----CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCC---EEEEEEECCC
Confidence 3555666655 22 356799999 999999999999999999999999999988764 6877777753
Done!