Query 044030
Match_columns 449
No_of_seqs 382 out of 3275
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 18:45:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 8.7E-53 3E-57 425.0 31.4 222 36-268 23-252 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 5.5E-53 1.9E-57 426.1 29.1 217 37-268 4-227 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 1.6E-52 5.6E-57 425.4 31.3 217 37-268 3-222 (381)
4 3tif_A Uncharacterized ABC tra 100.0 1.3E-52 4.6E-57 401.9 27.9 222 37-267 1-232 (235)
5 3gfo_A Cobalt import ATP-bindi 100.0 3.3E-52 1.1E-56 407.7 27.6 218 37-268 7-232 (275)
6 1b0u_A Histidine permease; ABC 100.0 9.3E-52 3.2E-56 402.2 29.8 216 37-268 6-241 (262)
7 2olj_A Amino acid ABC transpor 100.0 1.1E-51 3.9E-56 401.6 29.7 216 37-268 24-247 (263)
8 2pcj_A ABC transporter, lipopr 100.0 1.6E-51 5.4E-56 391.7 28.5 210 37-263 4-222 (224)
9 1z47_A CYSA, putative ABC-tran 100.0 2.7E-51 9.1E-56 413.8 30.9 222 33-268 10-234 (355)
10 1g29_1 MALK, maltose transport 100.0 4.3E-51 1.5E-55 415.5 32.2 217 37-268 3-228 (372)
11 2yyz_A Sugar ABC transporter, 100.0 2E-51 6.9E-56 415.5 29.2 217 37-268 3-222 (359)
12 1vpl_A ABC transporter, ATP-bi 100.0 3.7E-51 1.3E-55 396.5 29.3 218 36-269 14-235 (256)
13 2it1_A 362AA long hypothetical 100.0 3.4E-51 1.2E-55 414.3 30.0 217 37-268 3-222 (362)
14 1oxx_K GLCV, glucose, ABC tran 100.0 2.7E-51 9.2E-56 414.4 28.4 217 37-268 3-229 (353)
15 1g6h_A High-affinity branched- 100.0 2E-51 6.9E-56 398.8 25.9 217 37-266 7-239 (257)
16 4g1u_C Hemin import ATP-bindin 100.0 3.9E-51 1.3E-55 398.6 27.8 215 36-267 10-235 (266)
17 1v43_A Sugar-binding transport 100.0 4.8E-51 1.6E-55 414.6 28.2 217 37-268 11-230 (372)
18 1ji0_A ABC transporter; ATP bi 100.0 9.2E-51 3.1E-55 390.4 28.4 214 37-267 6-226 (240)
19 3d31_A Sulfate/molybdate ABC t 100.0 1.9E-50 6.3E-55 407.1 27.2 212 38-268 2-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 3.8E-50 1.3E-54 386.0 25.8 211 38-268 2-215 (240)
21 2yz2_A Putative ABC transporte 100.0 1E-49 3.4E-54 388.8 25.9 218 37-269 2-227 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 2.3E-49 7.7E-54 382.9 25.5 216 37-265 3-229 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 9.4E-50 3.2E-54 391.3 22.8 221 34-267 18-250 (279)
24 2nq2_C Hypothetical ABC transp 100.0 1.9E-48 6.5E-53 377.0 29.2 210 37-267 4-215 (253)
25 2zu0_C Probable ATP-dependent 100.0 3.3E-48 1.1E-52 378.2 26.4 221 37-268 20-253 (267)
26 2ixe_A Antigen peptide transpo 100.0 1.1E-48 3.9E-53 382.2 21.4 217 37-268 16-244 (271)
27 2qi9_C Vitamin B12 import ATP- 100.0 1.2E-47 4E-52 370.5 25.9 205 37-267 4-220 (249)
28 3nh6_A ATP-binding cassette SU 100.0 6.2E-48 2.1E-52 382.5 22.9 210 36-269 52-277 (306)
29 2ff7_A Alpha-hemolysin translo 100.0 1.6E-47 5.5E-52 369.3 24.3 209 37-268 7-231 (247)
30 1sgw_A Putative ABC transporte 100.0 4.7E-48 1.6E-52 365.1 18.6 204 34-258 7-210 (214)
31 2pjz_A Hypothetical protein ST 100.0 6.4E-47 2.2E-51 368.1 23.7 208 38-268 2-214 (263)
32 1mv5_A LMRA, multidrug resista 100.0 2.4E-47 8.2E-52 367.2 18.1 208 38-268 2-225 (243)
33 2ghi_A Transport protein; mult 100.0 4.9E-46 1.7E-50 361.5 24.4 210 36-268 16-241 (260)
34 2pze_A Cystic fibrosis transme 100.0 1.8E-45 6.1E-50 351.1 24.0 200 37-268 6-217 (229)
35 3gd7_A Fusion complex of cysti 100.0 3E-46 1E-50 381.6 18.8 208 36-268 18-241 (390)
36 2cbz_A Multidrug resistance-as 100.0 1.5E-45 5.1E-50 353.4 20.3 203 37-268 3-216 (237)
37 3qf4_A ABC transporter, ATP-bi 100.0 1.7E-44 5.9E-49 388.2 18.4 215 36-269 340-566 (587)
38 3b5x_A Lipid A export ATP-bind 100.0 2.7E-43 9.2E-48 378.7 24.6 211 36-268 340-566 (582)
39 4a82_A Cystic fibrosis transme 100.0 2.2E-43 7.5E-48 379.1 23.5 210 36-268 338-563 (578)
40 2yl4_A ATP-binding cassette SU 100.0 3.6E-43 1.2E-47 378.7 24.3 212 38-268 342-569 (595)
41 3b60_A Lipid A export ATP-bind 100.0 2.9E-43 9.9E-48 378.5 23.4 212 36-269 340-567 (582)
42 2bbs_A Cystic fibrosis transme 100.0 2.6E-43 9.1E-48 347.2 19.8 195 37-268 40-246 (290)
43 3qf4_B Uncharacterized ABC tra 100.0 2.5E-43 8.4E-48 380.1 20.7 210 36-269 353-578 (598)
44 4f4c_A Multidrug resistance pr 100.0 5.2E-41 1.8E-45 389.5 19.6 214 36-269 1075-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 1.9E-40 6.4E-45 384.9 19.9 211 36-268 414-640 (1321)
46 1yqt_A RNAse L inhibitor; ATP- 100.0 8.7E-40 3E-44 347.8 22.2 207 35-269 285-493 (538)
47 3bk7_A ABC transporter ATP-bin 100.0 1.4E-39 4.7E-44 350.2 23.9 207 35-269 355-563 (607)
48 3g5u_A MCG1178, multidrug resi 100.0 4.5E-40 1.5E-44 380.9 20.9 216 36-269 386-613 (1284)
49 3ozx_A RNAse L inhibitor; ATP 100.0 2.5E-39 8.4E-44 343.9 21.4 207 35-267 267-475 (538)
50 3g5u_A MCG1178, multidrug resi 100.0 2.2E-39 7.7E-44 375.0 20.8 214 36-269 1029-1258(1284)
51 3j16_B RLI1P; ribosome recycli 100.0 1.1E-37 3.6E-42 335.2 19.9 203 41-269 350-559 (608)
52 2iw3_A Elongation factor 3A; a 100.0 3E-36 1E-40 335.6 26.4 201 34-269 432-635 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 4.3E-37 1.5E-41 335.6 17.1 221 39-268 17-297 (670)
54 3bk7_A ABC transporter ATP-bin 100.0 2.6E-37 8.8E-42 332.5 13.0 191 41-257 95-305 (607)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 2.6E-37 9.1E-42 328.7 12.8 194 38-257 21-235 (538)
56 2iw3_A Elongation factor 3A; a 100.0 2.7E-36 9.4E-41 335.9 16.8 209 35-263 669-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 2.9E-35 9.8E-40 321.2 19.1 195 56-268 335-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 6.4E-34 2.2E-38 305.8 13.4 187 56-260 91-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 8.1E-34 2.8E-38 301.5 11.5 181 59-259 14-216 (538)
60 2r6f_A Excinuclease ABC subuni 100.0 1E-32 3.4E-37 305.3 15.5 208 36-268 628-941 (972)
61 2vf7_A UVRA2, excinuclease ABC 100.0 3E-32 1E-36 300.8 18.5 208 35-267 500-825 (842)
62 3pih_A Uvrabc system protein A 100.0 2E-31 6.8E-36 296.4 23.4 199 56-268 597-901 (916)
63 2ygr_A Uvrabc system protein A 100.0 6.1E-32 2.1E-36 300.0 17.3 208 36-268 646-959 (993)
64 4aby_A DNA repair protein RECN 100.0 6.7E-30 2.3E-34 262.8 19.8 199 56-262 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.9E-33 6.3E-38 293.3 -7.7 185 60-267 129-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.9E-27 1.7E-31 238.5 18.9 85 171-260 274-364 (365)
67 1e69_A Chromosome segregation 99.9 2.9E-26 9.8E-31 228.9 15.2 93 168-266 211-310 (322)
68 3b85_A Phosphate starvation-in 99.9 3.5E-30 1.2E-34 241.9 -12.9 142 54-240 11-159 (208)
69 1tq4_A IIGP1, interferon-induc 99.9 6.9E-29 2.4E-33 255.0 -9.3 179 56-256 36-254 (413)
70 4gp7_A Metallophosphoesterase; 99.9 5.6E-27 1.9E-31 212.9 4.1 146 61-244 1-163 (171)
71 1znw_A Guanylate kinase, GMP k 99.9 4.7E-29 1.6E-33 233.2 -14.8 182 54-254 7-202 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 7.5E-26 2.6E-30 207.3 3.7 143 71-260 2-159 (178)
73 3b9q_A Chloroplast SRP recepto 99.9 4.4E-26 1.5E-30 225.7 -2.0 173 59-258 90-284 (302)
74 2v9p_A Replication protein E1; 99.9 2E-27 6.8E-32 234.9 -15.6 169 37-273 101-270 (305)
75 2og2_A Putative signal recogni 99.9 6.8E-25 2.3E-29 221.5 -1.5 172 60-258 148-341 (359)
76 3sop_A Neuronal-specific septi 99.9 2.6E-25 9E-30 216.7 -5.8 145 71-239 4-150 (270)
77 2dpy_A FLII, flagellum-specifi 99.9 2.2E-26 7.5E-31 238.7 -15.1 193 36-267 130-342 (438)
78 2o5v_A DNA replication and rep 99.9 3.4E-22 1.1E-26 202.0 14.2 86 171-267 259-354 (359)
79 1z6g_A Guanylate kinase; struc 99.9 8.3E-27 2.8E-31 220.1 -19.9 175 56-251 10-205 (218)
80 3qkt_A DNA double-strand break 99.9 4.2E-21 1.4E-25 192.8 19.4 81 169-254 241-327 (339)
81 1cr0_A DNA primase/helicase; R 99.9 2.4E-23 8.1E-28 204.7 2.3 185 55-258 21-237 (296)
82 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.3E-23 8E-28 208.6 1.3 130 58-258 160-292 (330)
83 2jeo_A Uridine-cytidine kinase 99.9 2.2E-23 7.4E-28 199.8 -0.0 177 54-269 10-187 (245)
84 3pih_A Uvrabc system protein A 99.9 8.8E-22 3E-26 219.2 10.7 163 84-268 383-559 (916)
85 4ad8_A DNA repair protein RECN 99.8 1.8E-21 6.1E-26 206.2 11.1 78 173-256 393-473 (517)
86 2o8b_B DNA mismatch repair pro 99.8 2.4E-22 8.2E-27 226.9 2.7 174 36-265 749-938 (1022)
87 2obl_A ESCN; ATPase, hydrolase 99.8 5.9E-23 2E-27 206.9 -2.2 191 36-267 44-253 (347)
88 1tf7_A KAIC; homohexamer, hexa 99.8 1.9E-21 6.5E-26 206.3 9.3 156 63-257 275-444 (525)
89 3aez_A Pantothenate kinase; tr 99.8 1.5E-23 5.3E-28 208.3 -7.8 144 37-209 43-209 (312)
90 1tf7_A KAIC; homohexamer, hexa 99.8 5.8E-24 2E-28 225.7 -12.0 167 54-255 23-209 (525)
91 3thx_A DNA mismatch repair pro 99.8 1.6E-20 5.3E-25 209.9 10.9 154 54-267 647-811 (934)
92 2r6f_A Excinuclease ABC subuni 99.8 4.6E-20 1.6E-24 204.5 14.3 135 128-268 450-599 (972)
93 4a74_A DNA repair and recombin 99.8 2.2E-21 7.5E-26 182.2 0.8 161 58-257 13-201 (231)
94 2ygr_A Uvrabc system protein A 99.8 7.3E-20 2.5E-24 203.5 13.0 133 127-269 466-617 (993)
95 2ehv_A Hypothetical protein PH 99.8 5E-21 1.7E-25 182.0 1.4 167 58-254 18-206 (251)
96 3thx_B DNA mismatch repair pro 99.8 1.6E-20 5.4E-25 209.3 4.6 156 55-260 659-816 (918)
97 3asz_A Uridine kinase; cytidin 99.8 1.1E-22 3.7E-27 189.7 -11.6 147 66-240 3-162 (211)
98 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2E-19 6.8E-24 159.6 9.7 84 170-258 51-142 (148)
99 2eyu_A Twitching motility prot 99.8 1.6E-20 5.5E-25 182.0 2.8 133 57-255 15-147 (261)
100 2qnr_A Septin-2, protein NEDD5 99.8 1E-21 3.5E-26 194.3 -7.9 163 41-240 2-168 (301)
101 1ewq_A DNA mismatch repair pro 99.8 1.6E-19 5.4E-24 198.4 4.8 146 55-262 565-717 (765)
102 1w1w_A Structural maintenance 99.8 3.3E-18 1.1E-22 177.0 14.2 76 174-254 331-410 (430)
103 1wb9_A DNA mismatch repair pro 99.8 1.4E-19 5E-24 199.7 3.7 160 54-264 593-753 (800)
104 1pzn_A RAD51, DNA repair and r 99.8 2.6E-20 8.9E-25 187.9 -2.4 168 57-263 118-309 (349)
105 1rj9_A FTSY, signal recognitio 99.8 1.5E-20 5.3E-25 186.0 -4.1 147 68-239 101-258 (304)
106 2vf7_A UVRA2, excinuclease ABC 99.8 2.2E-18 7.6E-23 190.4 12.2 109 154-268 357-474 (842)
107 2w0m_A SSO2452; RECA, SSPF, un 99.7 2E-19 6.8E-24 168.6 2.1 171 55-256 8-192 (235)
108 1nlf_A Regulatory protein REPA 99.7 2.5E-18 8.6E-23 167.5 9.1 151 65-239 26-181 (279)
109 3szr_A Interferon-induced GTP- 99.7 2.6E-19 9E-24 192.9 -3.7 191 37-267 10-235 (608)
110 3jvv_A Twitching mobility prot 99.7 6.7E-18 2.3E-22 170.5 3.6 127 65-256 119-246 (356)
111 2i3b_A HCR-ntpase, human cance 99.7 5.2E-20 1.8E-24 170.0 -11.5 156 69-262 1-169 (189)
112 1pui_A ENGB, probable GTP-bind 99.7 1.1E-18 3.6E-23 161.6 -3.7 177 37-225 3-199 (210)
113 2qag_C Septin-7; cell cycle, c 99.7 1.4E-18 4.8E-23 178.8 -4.3 163 37-239 11-177 (418)
114 2cvh_A DNA repair and recombin 99.7 1E-16 3.4E-21 149.3 7.3 156 56-256 6-185 (220)
115 1s96_A Guanylate kinase, GMP k 99.6 6.9E-18 2.4E-22 159.3 -2.6 147 64-271 11-162 (219)
116 2bdt_A BH3686; alpha-beta prot 99.6 1.5E-20 5.1E-25 172.3 -20.6 172 69-267 2-182 (189)
117 3kta_B Chromosome segregation 99.6 9.6E-16 3.3E-20 139.3 10.2 82 170-257 58-145 (173)
118 1zp6_A Hypothetical protein AT 99.6 2.2E-18 7.4E-23 157.6 -9.7 139 65-223 5-148 (191)
119 2bbw_A Adenylate kinase 4, AK4 99.6 2.8E-18 9.7E-23 164.0 -10.0 146 68-225 26-199 (246)
120 1lw7_A Transcriptional regulat 99.6 4.2E-19 1.4E-23 179.9 -18.3 169 58-255 157-343 (365)
121 2ewv_A Twitching motility prot 99.6 5.6E-16 1.9E-20 157.4 2.1 130 58-254 127-257 (372)
122 2rcn_A Probable GTPase ENGC; Y 99.6 1.8E-15 6.1E-20 152.4 5.7 121 58-191 205-328 (358)
123 1n0w_A DNA repair protein RAD5 99.5 5.2E-15 1.8E-19 139.7 8.0 159 58-256 12-209 (243)
124 2gza_A Type IV secretion syste 99.5 1.2E-15 3.9E-20 154.5 2.4 136 59-258 165-304 (361)
125 2qag_B Septin-6, protein NEDD5 99.5 7.8E-16 2.7E-20 158.1 0.8 180 37-238 16-218 (427)
126 1nij_A Hypothetical protein YJ 99.5 9.6E-19 3.3E-23 174.2 -21.1 162 70-248 5-197 (318)
127 2yhs_A FTSY, cell division pro 99.5 2.6E-16 8.9E-21 163.8 -4.3 153 59-238 283-448 (503)
128 1htw_A HI0065; nucleotide-bind 99.5 2E-16 6.8E-21 141.8 -4.8 80 54-138 18-97 (158)
129 3e70_C DPA, signal recognition 99.5 1.2E-15 4E-20 152.4 0.0 142 66-238 126-278 (328)
130 1udx_A The GTP-binding protein 99.5 7E-16 2.4E-20 158.6 -3.8 162 59-251 147-320 (416)
131 2qm8_A GTPase/ATPase; G protei 99.5 5.2E-17 1.8E-21 162.9 -12.5 171 38-224 30-260 (337)
132 3ec2_A DNA replication protein 99.5 9.3E-16 3.2E-20 139.2 -3.5 114 63-242 32-146 (180)
133 3auy_A DNA double-strand break 99.5 8.9E-14 3E-18 141.0 10.5 77 172-254 276-359 (371)
134 2kjq_A DNAA-related protein; s 99.4 3.2E-14 1.1E-18 126.0 4.5 98 57-241 29-127 (149)
135 2yv5_A YJEQ protein; hydrolase 99.4 5.5E-15 1.9E-19 146.0 -1.2 117 66-189 162-300 (302)
136 1odf_A YGR205W, hypothetical 3 99.4 5.3E-15 1.8E-19 145.3 -2.9 128 67-211 29-169 (290)
137 1p9r_A General secretion pathw 99.4 4.1E-16 1.4E-20 160.5 -13.4 134 57-200 157-315 (418)
138 1sxj_E Activator 1 40 kDa subu 99.4 3E-13 1E-17 135.2 7.5 143 72-250 39-185 (354)
139 3lda_A DNA repair protein RAD5 99.4 2.3E-12 7.8E-17 131.9 12.8 161 58-257 166-364 (400)
140 2f1r_A Molybdopterin-guanine d 99.4 1.1E-15 3.8E-20 138.6 -10.5 136 70-226 3-163 (171)
141 2oap_1 GSPE-2, type II secreti 99.4 8.8E-17 3E-21 169.6 -20.7 173 56-248 247-458 (511)
142 1u0l_A Probable GTPase ENGC; p 99.3 7.8E-14 2.7E-18 137.6 -2.4 105 65-179 165-294 (301)
143 1in4_A RUVB, holliday junction 99.3 7.7E-15 2.6E-19 146.7 -10.4 169 54-249 29-211 (334)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 3E-15 1E-19 152.7 -13.9 169 65-265 16-209 (392)
145 3c8u_A Fructokinase; YP_612366 99.3 1.1E-14 3.7E-19 135.6 -9.8 160 66-271 19-183 (208)
146 1t9h_A YLOQ, probable GTPase E 99.2 4.7E-13 1.6E-17 132.2 -1.1 117 64-184 168-303 (307)
147 2x8a_A Nuclear valosin-contain 99.2 1.4E-15 4.7E-20 148.2 -20.4 141 55-219 32-190 (274)
148 2dr3_A UPF0273 protein PH0284; 99.2 1.6E-10 5.4E-15 108.9 11.8 61 193-255 127-196 (247)
149 1sq5_A Pantothenate kinase; P- 99.2 2.8E-13 9.7E-18 133.9 -7.6 138 37-209 37-199 (308)
150 2r6a_A DNAB helicase, replicat 99.2 4.6E-11 1.6E-15 124.2 8.6 175 55-258 189-401 (454)
151 1lvg_A Guanylate kinase, GMP k 99.1 9.2E-15 3.1E-19 135.4 -18.6 57 187-255 116-173 (198)
152 3lnc_A Guanylate kinase, GMP k 99.1 1E-14 3.5E-19 137.8 -20.5 39 56-94 14-53 (231)
153 1vma_A Cell division protein F 99.1 3.6E-11 1.2E-15 118.7 4.1 114 61-223 96-212 (306)
154 1ls1_A Signal recognition part 99.0 7.4E-10 2.5E-14 108.8 11.2 119 60-223 91-210 (295)
155 3k1j_A LON protease, ATP-depen 99.0 3.7E-12 1.3E-16 137.1 -6.3 161 54-221 45-227 (604)
156 3euj_A Chromosome partition pr 99.0 6.4E-11 2.2E-15 123.5 3.2 51 56-110 17-67 (483)
157 2px0_A Flagellar biosynthesis 99.0 4.8E-10 1.6E-14 110.2 8.6 144 67-261 103-247 (296)
158 3tr0_A Guanylate kinase, GMP k 99.0 7.3E-12 2.5E-16 115.1 -4.7 67 63-136 1-72 (205)
159 2zr9_A Protein RECA, recombina 99.0 4.2E-10 1.4E-14 113.1 7.6 156 57-263 47-237 (349)
160 2ius_A DNA translocase FTSK; n 99.0 1.2E-11 4.1E-16 129.9 -4.1 164 61-240 159-343 (512)
161 1oix_A RAS-related protein RAB 98.9 4.5E-10 1.5E-14 102.4 3.6 38 183-222 152-189 (191)
162 1iy2_A ATP-dependent metallopr 98.9 1.1E-12 3.7E-17 127.3 -16.5 123 55-197 61-190 (278)
163 1ixz_A ATP-dependent metallopr 98.9 5.9E-13 2E-17 127.3 -18.5 127 55-203 37-170 (254)
164 1qhl_A Protein (cell division 98.7 3.4E-10 1.2E-14 107.0 -4.2 58 36-110 8-65 (227)
165 2f9l_A RAB11B, member RAS onco 98.7 9.6E-09 3.3E-13 93.8 4.0 37 185-223 130-166 (199)
166 1svm_A Large T antigen; AAA+ f 98.7 1.7E-11 5.7E-16 124.5 -16.1 139 56-205 156-312 (377)
167 2qtf_A Protein HFLX, GTP-bindi 98.6 3.5E-09 1.2E-13 107.0 -0.6 149 68-225 177-354 (364)
168 3hr8_A Protein RECA; alpha and 98.6 1.8E-08 6.2E-13 101.3 4.2 38 57-94 47-86 (356)
169 4eun_A Thermoresistant glucoki 98.6 1.5E-09 5.3E-14 99.8 -4.4 41 63-110 23-63 (200)
170 2e87_A Hypothetical protein PH 98.5 7.4E-08 2.5E-12 96.8 6.3 125 68-240 166-293 (357)
171 2ce7_A Cell division protein F 98.5 7.7E-08 2.6E-12 100.4 6.6 113 57-239 39-164 (476)
172 4a1f_A DNAB helicase, replicat 98.5 1E-07 3.5E-12 95.2 6.0 132 56-237 33-164 (338)
173 2xau_A PRE-mRNA-splicing facto 98.5 2E-07 6.7E-12 103.0 8.1 76 171-250 185-262 (773)
174 3kta_A Chromosome segregation 98.5 1.1E-07 3.7E-12 85.6 5.0 38 57-95 13-52 (182)
175 3nwj_A ATSK2; P loop, shikimat 98.4 1.4E-08 4.7E-13 97.4 -1.7 52 37-93 17-72 (250)
176 3a00_A Guanylate kinase, GMP k 98.3 1.2E-07 4.1E-12 86.1 1.6 27 69-95 1-27 (186)
177 2dhr_A FTSH; AAA+ protein, hex 98.3 1.9E-09 6.6E-14 113.1 -12.0 128 56-205 53-187 (499)
178 1zu4_A FTSY; GTPase, signal re 98.3 9.6E-08 3.3E-12 94.7 0.9 76 59-137 95-185 (320)
179 3t34_A Dynamin-related protein 98.3 2E-06 6.9E-11 86.2 10.4 171 56-237 24-212 (360)
180 3uie_A Adenylyl-sulfate kinase 98.3 2.6E-08 8.8E-13 91.5 -3.5 53 54-110 10-64 (200)
181 1ega_A Protein (GTP-binding pr 98.3 1E-06 3.5E-11 86.4 7.2 67 177-251 101-170 (301)
182 2j41_A Guanylate kinase; GMP, 98.3 4.2E-07 1.4E-11 83.0 4.0 32 64-95 1-32 (207)
183 1jjv_A Dephospho-COA kinase; P 98.3 2.4E-07 8.3E-12 85.0 2.3 127 71-254 4-131 (206)
184 3vaa_A Shikimate kinase, SK; s 98.3 3.9E-07 1.3E-11 83.5 3.5 40 54-93 10-49 (199)
185 3bh0_A DNAB-like replicative h 98.2 1E-06 3.5E-11 87.0 6.2 135 55-238 54-190 (315)
186 1fnn_A CDC6P, cell division co 98.2 3.8E-06 1.3E-10 84.0 10.3 46 193-239 124-169 (389)
187 1kgd_A CASK, peripheral plasma 98.2 4.4E-07 1.5E-11 81.9 2.8 37 68-106 4-40 (180)
188 2z43_A DNA repair and recombin 98.1 1.3E-05 4.5E-10 79.2 12.0 139 64-238 102-257 (324)
189 1v5w_A DMC1, meiotic recombina 98.1 1.5E-05 5.1E-10 79.6 12.2 140 64-239 117-274 (343)
190 2vp4_A Deoxynucleoside kinase; 98.1 7.1E-07 2.4E-11 83.8 2.0 42 62-110 13-54 (230)
191 2z4s_A Chromosomal replication 98.1 1.1E-06 3.8E-11 90.8 2.5 70 193-265 193-264 (440)
192 3tau_A Guanylate kinase, GMP k 98.1 2E-06 6.8E-11 79.5 4.0 29 67-95 6-34 (208)
193 3b9p_A CG5977-PA, isoform A; A 98.0 3E-05 1E-09 75.0 11.8 75 179-253 98-186 (297)
194 4e22_A Cytidylate kinase; P-lo 98.0 5.1E-07 1.7E-11 86.2 -0.8 62 57-124 18-96 (252)
195 1knq_A Gluconate kinase; ALFA/ 98.0 2.3E-06 8E-11 76.2 2.2 35 67-108 6-40 (175)
196 2dy1_A Elongation factor G; tr 97.9 2.1E-06 7.1E-11 93.3 1.9 44 63-108 3-46 (665)
197 1rz3_A Hypothetical protein rb 97.9 1.4E-06 4.9E-11 79.9 0.5 40 66-108 19-58 (201)
198 3tqc_A Pantothenate kinase; bi 97.9 7.5E-07 2.6E-11 88.3 -1.5 41 54-94 71-117 (321)
199 2q6t_A DNAB replication FORK h 97.9 5.1E-05 1.7E-09 78.3 12.0 173 56-255 187-397 (444)
200 2qt1_A Nicotinamide riboside k 97.9 6E-06 2E-10 75.8 3.8 30 64-93 16-45 (207)
201 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 1.3E-05 4.3E-10 70.4 5.6 31 60-91 15-45 (149)
202 3cr8_A Sulfate adenylyltranfer 97.8 3.4E-06 1.1E-10 89.5 1.0 42 65-109 365-408 (552)
203 1kag_A SKI, shikimate kinase I 97.8 6.7E-06 2.3E-10 72.9 2.7 26 68-93 3-28 (173)
204 3ney_A 55 kDa erythrocyte memb 97.8 8.1E-06 2.8E-10 75.2 2.8 29 66-94 16-44 (197)
205 3kl4_A SRP54, signal recogniti 97.7 5.8E-05 2E-09 77.6 8.8 125 68-238 96-223 (433)
206 3cf0_A Transitional endoplasmi 97.7 4.6E-05 1.6E-09 74.3 6.9 29 65-93 45-73 (301)
207 1u94_A RECA protein, recombina 97.7 0.00071 2.4E-08 67.8 15.6 37 56-92 48-86 (356)
208 1ypw_A Transitional endoplasmi 97.7 3.3E-05 1.1E-09 85.6 6.3 31 64-94 233-263 (806)
209 2wjg_A FEOB, ferrous iron tran 97.7 2.4E-05 8.4E-10 69.7 3.9 22 71-92 9-30 (188)
210 2qby_A CDC6 homolog 1, cell di 97.6 7.7E-06 2.6E-10 81.3 0.4 28 67-94 43-70 (386)
211 2p67_A LAO/AO transport system 97.6 3.6E-06 1.2E-10 84.0 -2.2 52 54-108 41-92 (341)
212 3lxx_A GTPase IMAP family memb 97.6 0.0005 1.7E-08 64.2 12.7 45 193-238 111-155 (239)
213 3qks_A DNA double-strand break 97.6 5.3E-05 1.8E-09 69.7 5.2 31 61-92 16-46 (203)
214 2pez_A Bifunctional 3'-phospho 97.5 1.9E-05 6.7E-10 70.5 1.3 38 67-108 3-42 (179)
215 4eaq_A DTMP kinase, thymidylat 97.5 3.2E-05 1.1E-09 72.6 2.6 37 58-94 12-51 (229)
216 2i1q_A DNA repair and recombin 97.5 0.00045 1.5E-08 67.8 10.9 172 57-256 85-291 (322)
217 2www_A Methylmalonic aciduria 97.5 2.1E-05 7.2E-10 78.7 1.3 40 67-109 72-111 (349)
218 3bgw_A DNAB-like replicative h 97.4 0.00046 1.6E-08 71.2 10.5 36 56-91 184-219 (444)
219 2w58_A DNAI, primosome compone 97.4 0.00017 5.7E-09 65.5 6.2 24 70-93 55-78 (202)
220 3ice_A Transcription terminati 97.4 1.7E-05 6E-10 80.0 -0.6 52 37-93 133-198 (422)
221 1l8q_A Chromosomal replication 97.4 0.00031 1.1E-08 68.8 8.5 45 192-239 96-141 (324)
222 3m6a_A ATP-dependent protease 97.4 2.1E-05 7.3E-10 83.3 -0.1 49 56-108 96-144 (543)
223 2gj8_A MNME, tRNA modification 97.4 0.00019 6.4E-09 63.6 6.1 27 67-93 2-28 (172)
224 1cke_A CK, MSSA, protein (cyti 97.4 8E-05 2.7E-09 68.8 3.5 37 69-105 5-41 (227)
225 3llm_A ATP-dependent RNA helic 97.4 2.9E-05 9.9E-10 72.9 0.2 67 178-249 162-229 (235)
226 3h4m_A Proteasome-activating n 97.3 0.00058 2E-08 65.3 9.1 28 66-93 48-75 (285)
227 3auy_A DNA double-strand break 97.3 0.00021 7.1E-09 71.9 6.1 44 38-90 3-46 (371)
228 1m2o_B GTP-binding protein SAR 97.3 0.00022 7.5E-09 64.1 5.5 35 57-92 12-46 (190)
229 1mky_A Probable GTP-binding pr 97.3 0.0002 7E-09 73.6 5.9 40 71-110 182-230 (439)
230 1q57_A DNA primase/helicase; d 97.3 0.0047 1.6E-07 64.5 16.2 169 57-254 230-440 (503)
231 3bos_A Putative DNA replicatio 97.3 0.00032 1.1E-08 64.6 6.2 26 68-93 51-76 (242)
232 1m7g_A Adenylylsulfate kinase; 97.3 5.9E-05 2E-09 69.4 1.0 41 65-108 21-63 (211)
233 1y63_A LMAJ004144AAA protein; 97.3 0.00012 4E-09 66.0 2.9 32 61-92 2-33 (184)
234 2qor_A Guanylate kinase; phosp 97.2 0.00012 4.2E-09 66.9 3.1 28 66-93 9-36 (204)
235 1np6_A Molybdopterin-guanine d 97.2 0.00015 5E-09 65.4 3.0 39 70-108 7-45 (174)
236 2if2_A Dephospho-COA kinase; a 97.2 0.00015 5.2E-09 65.9 2.9 21 71-91 3-23 (204)
237 1f6b_A SAR1; gtpases, N-termin 97.1 8E-05 2.7E-09 67.6 0.6 37 55-92 12-48 (198)
238 1xp8_A RECA protein, recombina 97.1 0.0071 2.4E-07 60.7 14.5 35 57-91 60-96 (366)
239 2ffh_A Protein (FFH); SRP54, s 97.1 0.00011 3.8E-09 75.3 1.3 45 60-109 91-135 (425)
240 2wji_A Ferrous iron transport 97.0 0.00032 1.1E-08 61.4 3.4 23 71-93 5-27 (165)
241 1sxj_C Activator 1 40 kDa subu 97.0 6.4E-05 2.2E-09 74.4 -1.4 42 54-95 29-72 (340)
242 2ga8_A Hypothetical 39.9 kDa p 97.0 7E-05 2.4E-09 74.9 -1.3 37 57-93 10-48 (359)
243 2zts_A Putative uncharacterize 97.0 0.0054 1.9E-07 56.8 11.8 61 192-254 133-206 (251)
244 2yvu_A Probable adenylyl-sulfa 97.0 0.0004 1.4E-08 62.3 3.5 29 66-94 10-38 (186)
245 3t61_A Gluconokinase; PSI-biol 96.9 0.00034 1.2E-08 63.6 2.8 25 69-93 18-42 (202)
246 3cm0_A Adenylate kinase; ATP-b 96.9 0.00043 1.5E-08 61.7 3.4 26 67-92 2-27 (186)
247 1j8m_F SRP54, signal recogniti 96.9 8.7E-05 3E-09 72.6 -1.5 45 60-108 89-134 (297)
248 2p5t_B PEZT; postsegregational 96.9 0.00019 6.4E-09 68.2 0.9 46 58-109 22-67 (253)
249 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00038 1.3E-08 70.7 3.1 46 63-108 16-69 (396)
250 1lv7_A FTSH; alpha/beta domain 96.8 0.00038 1.3E-08 65.8 2.1 34 58-93 36-69 (257)
251 2v1u_A Cell division control p 96.8 0.00091 3.1E-08 66.2 5.0 27 67-93 42-68 (387)
252 2zej_A Dardarin, leucine-rich 96.8 0.00055 1.9E-08 61.0 3.0 23 71-93 4-26 (184)
253 3kb2_A SPBC2 prophage-derived 96.8 0.00061 2.1E-08 59.6 3.3 23 71-93 3-25 (173)
254 1q3t_A Cytidylate kinase; nucl 96.8 0.00061 2.1E-08 63.7 3.4 28 66-93 13-40 (236)
255 1qhx_A CPT, protein (chloramph 96.8 0.00074 2.5E-08 59.7 3.7 25 69-93 3-27 (178)
256 3d8b_A Fidgetin-like protein 1 96.8 0.0069 2.4E-07 60.3 11.0 27 67-93 115-141 (357)
257 2b8t_A Thymidine kinase; deoxy 96.8 0.0057 2E-07 57.1 9.7 53 194-254 89-150 (223)
258 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0047 1.6E-07 57.9 9.2 26 68-93 38-63 (262)
259 3io5_A Recombination and repai 96.7 0.0059 2E-07 60.0 9.9 27 64-91 24-51 (333)
260 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.022 7.5E-07 55.8 13.8 27 67-93 43-69 (322)
261 1kht_A Adenylate kinase; phosp 96.7 0.00097 3.3E-08 59.4 3.6 25 69-93 3-27 (192)
262 3cmw_A Protein RECA, recombina 96.6 0.026 9E-07 66.7 16.2 29 65-93 728-756 (1706)
263 2chg_A Replication factor C sm 96.6 0.0033 1.1E-07 56.5 7.0 42 193-239 101-142 (226)
264 2qag_A Septin-2, protein NEDD5 96.6 0.00047 1.6E-08 69.1 1.3 46 37-94 17-62 (361)
265 3r20_A Cytidylate kinase; stru 96.6 0.001 3.5E-08 62.6 3.4 25 69-93 9-33 (233)
266 2ze6_A Isopentenyl transferase 96.6 0.0011 3.7E-08 63.0 3.4 24 70-93 2-25 (253)
267 3lw7_A Adenylate kinase relate 96.6 0.0011 3.9E-08 57.6 3.3 19 71-89 3-21 (179)
268 2rhm_A Putative kinase; P-loop 96.6 0.0011 3.9E-08 59.1 3.3 26 67-92 3-28 (193)
269 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0066 2.3E-07 59.8 8.8 33 59-91 113-145 (331)
270 1ex7_A Guanylate kinase; subst 96.5 0.0012 4.2E-08 59.9 3.2 23 71-93 3-25 (186)
271 1vht_A Dephospho-COA kinase; s 96.5 0.0014 4.8E-08 60.2 3.6 24 68-91 3-26 (218)
272 3cmw_A Protein RECA, recombina 96.5 0.028 9.7E-07 66.4 15.1 35 57-91 369-405 (1706)
273 2jaq_A Deoxyguanosine kinase; 96.5 0.0015 5E-08 58.8 3.4 23 71-93 2-24 (205)
274 3trf_A Shikimate kinase, SK; a 96.4 0.0016 5.4E-08 58.0 3.5 26 68-93 4-29 (185)
275 2plr_A DTMP kinase, probable t 96.4 0.0019 6.4E-08 58.5 3.7 27 68-94 3-29 (213)
276 3iij_A Coilin-interacting nucl 96.4 0.0015 5.1E-08 58.0 3.0 25 68-92 10-34 (180)
277 2v54_A DTMP kinase, thymidylat 96.4 0.0019 6.4E-08 58.3 3.7 26 68-93 3-28 (204)
278 3k53_A Ferrous iron transport 96.4 0.0013 4.6E-08 62.7 2.9 47 203-252 144-190 (271)
279 1ly1_A Polynucleotide kinase; 96.4 0.0018 6E-08 57.1 3.4 22 70-91 3-24 (181)
280 1via_A Shikimate kinase; struc 96.3 0.0018 6.1E-08 57.3 3.2 23 71-93 6-28 (175)
281 1xjc_A MOBB protein homolog; s 96.3 0.0015 5.1E-08 58.5 2.5 25 70-94 5-29 (169)
282 1gtv_A TMK, thymidylate kinase 96.3 0.00096 3.3E-08 60.8 1.2 24 71-94 2-25 (214)
283 1gvn_B Zeta; postsegregational 96.3 0.0019 6.5E-08 62.6 3.3 36 67-107 31-66 (287)
284 2wwf_A Thymidilate kinase, put 96.3 0.0021 7.2E-08 58.3 3.4 27 67-93 8-34 (212)
285 1uf9_A TT1252 protein; P-loop, 96.3 0.0022 7.5E-08 57.7 3.4 24 69-92 8-31 (203)
286 2c95_A Adenylate kinase 1; tra 96.3 0.002 6.9E-08 57.6 3.2 27 67-93 7-33 (196)
287 2qp9_X Vacuolar protein sortin 96.2 0.018 6.2E-07 57.3 10.3 27 67-93 82-108 (355)
288 1tev_A UMP-CMP kinase; ploop, 96.2 0.0026 9E-08 56.6 3.6 24 69-92 3-26 (196)
289 1nks_A Adenylate kinase; therm 96.2 0.0023 7.8E-08 56.9 3.1 23 71-93 3-25 (194)
290 2ged_A SR-beta, signal recogni 96.2 0.0022 7.6E-08 57.0 3.0 24 70-93 49-72 (193)
291 1nn5_A Similar to deoxythymidy 96.2 0.0024 8.3E-08 58.0 3.3 27 67-93 7-33 (215)
292 2r8r_A Sensor protein; KDPD, P 96.1 0.0027 9.1E-08 59.5 3.4 80 190-279 80-181 (228)
293 2nzj_A GTP-binding protein REM 96.1 0.0028 9.5E-08 55.1 3.2 23 71-93 6-28 (175)
294 1z2a_A RAS-related protein RAB 96.1 0.0026 8.8E-08 54.8 2.9 23 71-93 7-29 (168)
295 2erx_A GTP-binding protein DI- 96.1 0.0029 9.9E-08 54.6 3.2 22 71-92 5-26 (172)
296 3q72_A GTP-binding protein RAD 96.1 0.0023 8E-08 55.1 2.5 22 72-93 5-26 (166)
297 3hu3_A Transitional endoplasmi 96.1 0.0068 2.3E-07 63.2 6.4 28 66-93 235-262 (489)
298 1kao_A RAP2A; GTP-binding prot 96.1 0.0029 9.9E-08 54.2 3.0 23 71-93 5-27 (167)
299 3b1v_A Ferrous iron uptake tra 96.1 0.0043 1.5E-07 59.6 4.5 23 71-93 5-27 (272)
300 2bwj_A Adenylate kinase 5; pho 96.1 0.0026 8.7E-08 57.1 2.7 27 67-93 10-36 (199)
301 2dyk_A GTP-binding protein; GT 96.1 0.003 1E-07 54.1 3.0 23 71-93 3-25 (161)
302 3cmu_A Protein RECA, recombina 96.0 0.06 2.1E-06 64.5 14.8 36 57-92 369-406 (2050)
303 1u8z_A RAS-related protein RAL 96.0 0.003 1E-07 54.2 2.9 23 71-93 6-28 (168)
304 3ake_A Cytidylate kinase; CMP 96.0 0.0031 1.1E-07 56.9 3.2 23 71-93 4-26 (208)
305 2ce2_X GTPase HRAS; signaling 96.0 0.0027 9.3E-08 54.2 2.7 23 71-93 5-27 (166)
306 3q85_A GTP-binding protein REM 96.0 0.0033 1.1E-07 54.4 3.2 22 72-93 5-26 (169)
307 2z0h_A DTMP kinase, thymidylat 96.0 0.0034 1.2E-07 56.2 3.3 23 71-93 2-24 (197)
308 1z0j_A RAB-22, RAS-related pro 96.0 0.0032 1.1E-07 54.3 3.0 23 71-93 8-30 (170)
309 3tw8_B RAS-related protein RAB 96.0 0.003 1E-07 55.1 2.8 23 71-93 11-33 (181)
310 1z08_A RAS-related protein RAB 96.0 0.0033 1.1E-07 54.3 3.0 23 71-93 8-30 (170)
311 1ek0_A Protein (GTP-binding pr 96.0 0.0033 1.1E-07 54.1 2.9 23 71-93 5-27 (170)
312 1aky_A Adenylate kinase; ATP:A 96.0 0.0039 1.3E-07 57.3 3.7 26 68-93 3-28 (220)
313 1jal_A YCHF protein; nucleotid 96.0 0.0052 1.8E-07 61.6 4.7 39 69-107 2-48 (363)
314 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.0034 1.2E-07 54.7 3.0 23 71-93 9-31 (177)
315 1fzq_A ADP-ribosylation factor 96.0 0.0028 9.7E-08 56.2 2.5 22 71-92 18-39 (181)
316 1c1y_A RAS-related protein RAP 96.0 0.0034 1.2E-07 53.9 2.9 23 71-93 5-27 (167)
317 1g16_A RAS-related protein SEC 96.0 0.0031 1.1E-07 54.4 2.7 22 72-93 6-27 (170)
318 1ky3_A GTP-binding protein YPT 95.9 0.0035 1.2E-07 54.7 3.0 23 71-93 10-32 (182)
319 2vli_A Antibiotic resistance p 95.9 0.0027 9.3E-08 56.2 2.3 26 68-93 4-29 (183)
320 1ko7_A HPR kinase/phosphatase; 95.9 0.0059 2E-07 59.9 4.9 37 55-92 131-167 (314)
321 1svi_A GTP-binding protein YSX 95.9 0.0032 1.1E-07 56.0 2.7 23 71-93 25-47 (195)
322 1zd8_A GTP:AMP phosphotransfer 95.9 0.0039 1.3E-07 57.7 3.3 27 67-93 5-31 (227)
323 2lkc_A Translation initiation 95.9 0.0048 1.6E-07 53.8 3.7 25 69-93 8-32 (178)
324 4ag6_A VIRB4 ATPase, type IV s 95.9 0.0025 8.4E-08 64.3 2.0 45 194-241 262-309 (392)
325 3lxw_A GTPase IMAP family memb 95.9 0.0038 1.3E-07 58.9 3.2 23 71-93 23-45 (247)
326 3pqc_A Probable GTP-binding pr 95.9 0.0035 1.2E-07 55.5 2.7 23 71-93 25-47 (195)
327 2fn4_A P23, RAS-related protei 95.9 0.0036 1.2E-07 54.6 2.7 23 71-93 11-33 (181)
328 3fb4_A Adenylate kinase; psych 95.8 0.0044 1.5E-07 56.5 3.3 22 71-92 2-23 (216)
329 3clv_A RAB5 protein, putative; 95.8 0.0041 1.4E-07 55.1 3.0 23 71-93 9-31 (208)
330 4dsu_A GTPase KRAS, isoform 2B 95.8 0.0041 1.4E-07 54.7 3.0 23 71-93 6-28 (189)
331 1r2q_A RAS-related protein RAB 95.8 0.0041 1.4E-07 53.5 2.9 22 71-92 8-29 (170)
332 2pbr_A DTMP kinase, thymidylat 95.8 0.0046 1.6E-07 55.0 3.4 23 71-93 2-24 (195)
333 2cxx_A Probable GTP-binding pr 95.8 0.0037 1.3E-07 55.1 2.7 22 72-93 4-25 (190)
334 2cdn_A Adenylate kinase; phosp 95.8 0.0052 1.8E-07 55.5 3.7 25 69-93 20-44 (201)
335 2hxs_A RAB-26, RAS-related pro 95.8 0.0047 1.6E-07 53.8 3.2 23 71-93 8-30 (178)
336 3vfd_A Spastin; ATPase, microt 95.8 0.068 2.3E-06 53.5 12.3 26 68-93 147-172 (389)
337 1upt_A ARL1, ADP-ribosylation 95.8 0.0043 1.5E-07 53.6 2.9 23 71-93 9-31 (171)
338 2oil_A CATX-8, RAS-related pro 95.8 0.0044 1.5E-07 55.1 3.0 23 71-93 27-49 (193)
339 3bc1_A RAS-related protein RAB 95.8 0.0044 1.5E-07 54.6 2.9 23 71-93 13-35 (195)
340 1zuh_A Shikimate kinase; alpha 95.8 0.0054 1.9E-07 53.7 3.5 24 70-93 8-31 (168)
341 1e6c_A Shikimate kinase; phosp 95.8 0.0044 1.5E-07 54.3 2.8 23 71-93 4-26 (173)
342 1r8s_A ADP-ribosylation factor 95.7 0.0047 1.6E-07 53.0 2.9 21 72-92 3-23 (164)
343 1ukz_A Uridylate kinase; trans 95.7 0.0054 1.9E-07 55.4 3.5 24 69-92 15-38 (203)
344 1zak_A Adenylate kinase; ATP:A 95.7 0.0042 1.5E-07 57.1 2.8 26 68-93 4-29 (222)
345 1moz_A ARL1, ADP-ribosylation 95.7 0.0029 9.8E-08 55.6 1.5 23 69-91 18-40 (183)
346 3dl0_A Adenylate kinase; phosp 95.7 0.0053 1.8E-07 56.1 3.3 23 71-93 2-24 (216)
347 2pt5_A Shikimate kinase, SK; a 95.7 0.0059 2E-07 53.2 3.4 23 71-93 2-24 (168)
348 1wf3_A GTP-binding protein; GT 95.7 0.0053 1.8E-07 59.8 3.4 23 71-93 9-31 (301)
349 2y8e_A RAB-protein 6, GH09086P 95.7 0.0046 1.6E-07 53.8 2.7 23 71-93 16-38 (179)
350 2g6b_A RAS-related protein RAB 95.7 0.0051 1.7E-07 53.7 2.9 23 71-93 12-34 (180)
351 1qf9_A UMP/CMP kinase, protein 95.7 0.0057 1.9E-07 54.3 3.3 24 69-92 6-29 (194)
352 2a9k_A RAS-related protein RAL 95.7 0.0051 1.7E-07 53.9 2.9 23 71-93 20-42 (187)
353 1z0f_A RAB14, member RAS oncog 95.7 0.0052 1.8E-07 53.4 2.9 23 71-93 17-39 (179)
354 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0063 2.2E-07 57.7 3.7 25 68-92 3-27 (260)
355 3iev_A GTP-binding protein ERA 95.7 0.0055 1.9E-07 59.8 3.4 24 70-93 11-34 (308)
356 3iby_A Ferrous iron transport 95.7 0.0048 1.7E-07 58.6 2.9 23 71-93 3-25 (256)
357 2iyv_A Shikimate kinase, SK; t 95.7 0.0048 1.6E-07 54.8 2.7 24 70-93 3-26 (184)
358 3t1o_A Gliding protein MGLA; G 95.6 0.0057 1.9E-07 54.1 3.2 25 71-95 16-40 (198)
359 3con_A GTPase NRAS; structural 95.6 0.0053 1.8E-07 54.4 2.9 23 71-93 23-45 (190)
360 2efe_B Small GTP-binding prote 95.6 0.0055 1.9E-07 53.5 3.0 23 71-93 14-36 (181)
361 1nrj_B SR-beta, signal recogni 95.6 0.0055 1.9E-07 55.7 2.9 23 71-93 14-36 (218)
362 3t5d_A Septin-7; GTP-binding p 95.6 0.0049 1.7E-07 58.9 2.6 23 71-93 10-32 (274)
363 2bme_A RAB4A, RAS-related prot 95.6 0.0054 1.8E-07 53.9 2.7 23 71-93 12-34 (186)
364 2bov_A RAla, RAS-related prote 95.6 0.0059 2E-07 54.6 2.9 23 71-93 16-38 (206)
365 3ihw_A Centg3; RAS, centaurin, 95.6 0.0061 2.1E-07 54.2 3.0 22 71-92 22-43 (184)
366 1vg8_A RAS-related protein RAB 95.5 0.0061 2.1E-07 54.7 3.0 23 71-93 10-32 (207)
367 2gf9_A RAS-related protein RAB 95.5 0.0061 2.1E-07 54.1 2.9 23 71-93 24-46 (189)
368 1ksh_A ARF-like protein 2; sma 95.5 0.0061 2.1E-07 53.7 2.9 26 68-93 17-42 (186)
369 3tkl_A RAS-related protein RAB 95.5 0.0062 2.1E-07 54.0 2.9 23 71-93 18-40 (196)
370 3cbq_A GTP-binding protein REM 95.5 0.0049 1.7E-07 55.5 2.3 22 71-92 25-46 (195)
371 3tlx_A Adenylate kinase 2; str 95.5 0.0076 2.6E-07 56.6 3.7 25 68-92 28-52 (243)
372 2dby_A GTP-binding protein; GD 95.5 0.0057 2E-07 61.4 2.9 22 72-93 4-25 (368)
373 2xtp_A GTPase IMAP family memb 95.5 0.006 2.1E-07 57.5 2.9 23 71-93 24-46 (260)
374 4fcw_A Chaperone protein CLPB; 95.5 0.0071 2.4E-07 58.2 3.5 26 70-95 48-73 (311)
375 2gf0_A GTP-binding protein DI- 95.5 0.0059 2E-07 54.3 2.7 22 71-92 10-31 (199)
376 3a1s_A Iron(II) transport prot 95.5 0.0067 2.3E-07 57.6 3.2 23 71-93 7-29 (258)
377 3kkq_A RAS-related protein M-R 95.5 0.0066 2.3E-07 53.3 2.9 23 71-93 20-42 (183)
378 1uj2_A Uridine-cytidine kinase 95.5 0.0072 2.5E-07 56.9 3.3 24 70-93 23-46 (252)
379 2fg5_A RAB-22B, RAS-related pr 95.5 0.0061 2.1E-07 54.4 2.7 23 71-93 25-47 (192)
380 1m7b_A RND3/RHOE small GTP-bin 95.5 0.0061 2.1E-07 53.9 2.7 23 71-93 9-31 (184)
381 1mh1_A RAC1; GTP-binding, GTPa 95.5 0.0069 2.4E-07 53.1 2.9 23 71-93 7-29 (186)
382 1zbd_A Rabphilin-3A; G protein 95.4 0.0074 2.5E-07 54.1 3.2 23 71-93 10-32 (203)
383 1jbk_A CLPB protein; beta barr 95.4 0.0088 3E-07 52.3 3.6 27 67-93 41-67 (195)
384 2grj_A Dephospho-COA kinase; T 95.4 0.0079 2.7E-07 54.7 3.3 24 69-92 12-35 (192)
385 3i8s_A Ferrous iron transport 95.4 0.0066 2.3E-07 58.2 2.9 23 71-93 5-27 (274)
386 2cjw_A GTP-binding protein GEM 95.4 0.0071 2.4E-07 54.3 2.9 22 71-92 8-29 (192)
387 1z06_A RAS-related protein RAB 95.4 0.0074 2.5E-07 53.5 3.0 23 71-93 22-44 (189)
388 2wsm_A Hydrogenase expression/ 95.4 0.0072 2.5E-07 55.1 2.9 24 70-93 31-54 (221)
389 4dhe_A Probable GTP-binding pr 95.4 0.004 1.4E-07 56.7 1.2 23 71-93 31-53 (223)
390 2xb4_A Adenylate kinase; ATP-b 95.4 0.0084 2.9E-07 55.4 3.4 22 71-92 2-23 (223)
391 2il1_A RAB12; G-protein, GDP, 95.4 0.0071 2.4E-07 54.0 2.8 23 71-93 28-50 (192)
392 3oes_A GTPase rhebl1; small GT 95.4 0.0068 2.3E-07 54.5 2.7 23 71-93 26-48 (201)
393 1jwy_B Dynamin A GTPase domain 95.4 0.007 2.4E-07 58.6 2.9 23 71-93 26-48 (315)
394 2a5j_A RAS-related protein RAB 95.3 0.0078 2.7E-07 53.5 3.0 23 71-93 23-45 (191)
395 3t5g_A GTP-binding protein RHE 95.3 0.0071 2.4E-07 53.0 2.7 22 71-92 8-29 (181)
396 2qmh_A HPR kinase/phosphorylas 95.3 0.014 4.8E-07 53.5 4.7 36 56-92 22-57 (205)
397 3bwd_D RAC-like GTP-binding pr 95.3 0.0079 2.7E-07 52.6 2.9 23 71-93 10-32 (182)
398 3dz8_A RAS-related protein RAB 95.3 0.0072 2.5E-07 53.8 2.7 23 71-93 25-47 (191)
399 1zd9_A ADP-ribosylation factor 95.3 0.0081 2.8E-07 53.3 2.9 23 71-93 24-46 (188)
400 1x3s_A RAS-related protein RAB 95.3 0.0081 2.8E-07 53.1 2.9 23 71-93 17-39 (195)
401 1zj6_A ADP-ribosylation factor 95.3 0.008 2.7E-07 53.2 2.9 22 71-92 18-39 (187)
402 2o52_A RAS-related protein RAB 95.3 0.0079 2.7E-07 54.1 2.9 23 71-93 27-49 (200)
403 2qu8_A Putative nucleolar GTP- 95.3 0.008 2.7E-07 55.4 2.9 22 71-92 31-52 (228)
404 3a8t_A Adenylate isopentenyltr 95.3 0.014 4.9E-07 57.7 4.9 26 68-93 39-64 (339)
405 3cph_A RAS-related protein SEC 95.3 0.0082 2.8E-07 54.1 2.9 23 71-93 22-44 (213)
406 2atv_A RERG, RAS-like estrogen 95.3 0.0084 2.9E-07 53.5 3.0 23 71-93 30-52 (196)
407 2h57_A ADP-ribosylation factor 95.3 0.0061 2.1E-07 54.1 2.0 23 71-93 23-45 (190)
408 2bcg_Y Protein YP2, GTP-bindin 95.3 0.0075 2.6E-07 54.3 2.7 23 71-93 10-32 (206)
409 3reg_A RHO-like small GTPase; 95.3 0.0084 2.9E-07 53.4 2.9 23 71-93 25-47 (194)
410 4bas_A ADP-ribosylation factor 95.3 0.0082 2.8E-07 53.3 2.9 23 71-93 19-41 (199)
411 2p5s_A RAS and EF-hand domain 95.3 0.0085 2.9E-07 53.7 3.0 23 71-93 30-52 (199)
412 3be4_A Adenylate kinase; malar 95.3 0.0091 3.1E-07 54.8 3.2 25 69-93 5-29 (217)
413 2f7s_A C25KG, RAS-related prot 95.2 0.0096 3.3E-07 54.0 3.2 23 71-93 27-49 (217)
414 2f6r_A COA synthase, bifunctio 95.2 0.0088 3E-07 57.6 3.1 23 69-91 75-97 (281)
415 1a7j_A Phosphoribulokinase; tr 95.2 0.005 1.7E-07 59.7 1.4 26 68-93 4-29 (290)
416 2h17_A ADP-ribosylation factor 95.2 0.0075 2.6E-07 53.1 2.4 22 71-92 23-44 (181)
417 2ew1_A RAS-related protein RAB 95.2 0.008 2.7E-07 54.5 2.7 23 71-93 28-50 (201)
418 1njg_A DNA polymerase III subu 95.2 0.0023 8E-08 58.2 -1.0 43 193-240 125-167 (250)
419 2iwr_A Centaurin gamma 1; ANK 95.2 0.0072 2.5E-07 52.8 2.2 22 71-92 9-30 (178)
420 3umf_A Adenylate kinase; rossm 95.2 0.011 3.8E-07 54.9 3.5 28 66-93 26-53 (217)
421 4edh_A DTMP kinase, thymidylat 95.1 0.012 4.2E-07 54.3 3.7 28 67-94 4-31 (213)
422 2q3h_A RAS homolog gene family 95.1 0.011 3.6E-07 53.0 3.2 23 71-93 22-44 (201)
423 1e4v_A Adenylate kinase; trans 95.1 0.01 3.4E-07 54.3 3.1 22 71-92 2-23 (214)
424 2fv8_A H6, RHO-related GTP-bin 95.1 0.009 3.1E-07 54.0 2.7 23 71-93 27-49 (207)
425 2aka_B Dynamin-1; fusion prote 95.1 0.0086 2.9E-07 57.3 2.7 23 71-93 28-50 (299)
426 2orv_A Thymidine kinase; TP4A 95.1 0.068 2.3E-06 50.0 8.7 53 193-254 89-150 (234)
427 3c5c_A RAS-like protein 12; GD 95.1 0.01 3.5E-07 52.7 3.0 23 71-93 23-45 (187)
428 1ltq_A Polynucleotide kinase; 95.1 0.012 4E-07 56.7 3.5 22 70-91 3-24 (301)
429 2j1l_A RHO-related GTP-binding 95.1 0.01 3.5E-07 54.0 2.9 22 71-92 36-57 (214)
430 1gwn_A RHO-related GTP-binding 95.1 0.0095 3.3E-07 54.1 2.7 23 71-93 30-52 (205)
431 3llu_A RAS-related GTP-binding 95.1 0.011 3.9E-07 52.8 3.1 24 71-94 22-45 (196)
432 1ak2_A Adenylate kinase isoenz 95.0 0.013 4.5E-07 54.3 3.6 26 68-93 15-40 (233)
433 2fh5_B SR-beta, signal recogni 95.0 0.011 3.7E-07 53.6 2.9 23 71-93 9-31 (214)
434 2fu5_C RAS-related protein RAB 95.0 0.0071 2.4E-07 53.1 1.6 22 71-92 10-31 (183)
435 2j9r_A Thymidine kinase; TK1, 95.0 0.042 1.4E-06 50.8 6.9 53 194-254 101-162 (214)
436 2b6h_A ADP-ribosylation factor 95.0 0.0098 3.4E-07 53.2 2.5 22 71-92 31-52 (192)
437 2p65_A Hypothetical protein PF 95.0 0.011 3.9E-07 51.6 2.9 27 67-93 41-67 (187)
438 2gco_A H9, RHO-related GTP-bin 95.0 0.011 3.7E-07 53.2 2.7 23 71-93 27-49 (201)
439 3v9p_A DTMP kinase, thymidylat 94.9 0.011 3.8E-07 55.2 2.8 28 66-93 22-49 (227)
440 3def_A T7I23.11 protein; chlor 94.9 0.012 4E-07 55.8 2.9 23 71-93 38-60 (262)
441 1sky_E F1-ATPase, F1-ATP synth 94.9 0.015 5.1E-07 60.1 3.8 36 57-93 140-175 (473)
442 3d3q_A TRNA delta(2)-isopenten 94.9 0.013 4.6E-07 58.0 3.3 24 70-93 8-31 (340)
443 3zvl_A Bifunctional polynucleo 94.9 0.013 4.5E-07 59.7 3.4 27 66-92 255-281 (416)
444 3lv8_A DTMP kinase, thymidylat 94.9 0.014 4.8E-07 54.9 3.3 27 68-94 26-52 (236)
445 4djt_A GTP-binding nuclear pro 94.8 0.0066 2.2E-07 55.2 0.9 23 71-93 13-35 (218)
446 2atx_A Small GTP binding prote 94.8 0.012 4.2E-07 52.2 2.7 23 71-93 20-42 (194)
447 2g3y_A GTP-binding protein GEM 94.8 0.014 4.9E-07 53.6 3.2 22 71-92 39-60 (211)
448 1h65_A Chloroplast outer envel 94.8 0.012 4.2E-07 55.9 2.9 23 71-93 41-63 (270)
449 3exa_A TRNA delta(2)-isopenten 94.8 0.017 5.7E-07 56.7 3.8 25 69-93 3-27 (322)
450 1sxj_D Activator 1 41 kDa subu 94.8 0.004 1.4E-07 61.0 -0.8 42 194-240 133-174 (353)
451 3sr0_A Adenylate kinase; phosp 94.7 0.017 5.7E-07 53.1 3.3 23 71-93 2-24 (206)
452 2h92_A Cytidylate kinase; ross 94.7 0.015 5.2E-07 53.0 3.0 25 69-93 3-27 (219)
453 2hf9_A Probable hydrogenase ni 94.7 0.015 5.1E-07 53.1 2.9 24 70-93 39-62 (226)
454 2ocp_A DGK, deoxyguanosine kin 94.7 0.018 6E-07 53.7 3.5 26 68-93 1-26 (241)
455 4tmk_A Protein (thymidylate ki 94.7 0.018 6E-07 53.3 3.4 27 68-94 2-28 (213)
456 3cpj_B GTP-binding protein YPT 94.7 0.016 5.4E-07 53.1 3.0 23 71-93 15-37 (223)
457 2hup_A RAS-related protein RAB 94.6 0.014 5E-07 52.5 2.7 23 71-93 31-53 (201)
458 2yc2_C IFT27, small RAB-relate 94.6 0.007 2.4E-07 54.1 0.5 22 71-92 22-43 (208)
459 2x77_A ADP-ribosylation factor 94.6 0.01 3.4E-07 52.6 1.5 22 71-92 24-45 (189)
460 3tmk_A Thymidylate kinase; pho 94.6 0.018 6.2E-07 53.4 3.3 28 67-94 3-30 (216)
461 3crm_A TRNA delta(2)-isopenten 94.6 0.018 6.1E-07 56.7 3.4 24 70-93 6-29 (323)
462 3cnl_A YLQF, putative uncharac 94.6 0.015 5.3E-07 55.4 2.9 25 70-94 100-124 (262)
463 4dcu_A GTP-binding protein ENG 94.5 0.015 5E-07 59.9 2.8 22 71-92 25-46 (456)
464 3ld9_A DTMP kinase, thymidylat 94.5 0.022 7.5E-07 53.1 3.7 27 67-93 19-45 (223)
465 3cmu_A Protein RECA, recombina 94.5 0.26 8.9E-06 59.2 13.4 36 58-93 719-756 (2050)
466 4gzl_A RAS-related C3 botulinu 94.5 0.017 5.7E-07 52.2 2.7 22 71-92 32-53 (204)
467 3q3j_B RHO-related GTP-binding 94.4 0.018 6.3E-07 52.4 2.9 23 71-93 29-51 (214)
468 1p5z_B DCK, deoxycytidine kina 94.4 0.014 4.9E-07 55.1 2.3 27 67-93 22-48 (263)
469 2r62_A Cell division protease 94.4 0.0048 1.6E-07 58.3 -1.1 29 63-93 40-68 (268)
470 3tqf_A HPR(Ser) kinase; transf 94.4 0.034 1.2E-06 49.8 4.4 33 58-91 6-38 (181)
471 2j0v_A RAC-like GTP-binding pr 94.4 0.018 6.1E-07 52.0 2.7 23 71-93 11-33 (212)
472 1ypw_A Transitional endoplasmi 94.3 0.0069 2.4E-07 67.0 -0.3 32 62-93 504-535 (806)
473 3foz_A TRNA delta(2)-isopenten 94.2 0.027 9.2E-07 55.1 3.7 25 69-93 10-34 (316)
474 2orw_A Thymidine kinase; TMTK, 94.2 0.025 8.7E-07 50.8 3.3 53 194-254 76-137 (184)
475 3eph_A TRNA isopentenyltransfe 93.9 0.03 1E-06 56.7 3.4 24 70-93 3-26 (409)
476 1wxq_A GTP-binding protein; st 93.8 0.027 9.1E-07 57.1 2.9 41 156-200 181-221 (397)
477 3p32_A Probable GTPase RV1496/ 93.8 0.034 1.1E-06 55.3 3.6 26 68-93 78-103 (355)
478 3n70_A Transport activator; si 93.8 0.03 1E-06 47.9 2.8 42 194-240 76-117 (145)
479 3syl_A Protein CBBX; photosynt 93.8 0.033 1.1E-06 53.4 3.4 27 67-93 65-91 (309)
480 1puj_A YLQF, conserved hypothe 93.7 0.036 1.2E-06 53.4 3.5 25 69-93 120-144 (282)
481 2x2e_A Dynamin-1; nitration, h 93.7 0.021 7.3E-07 56.6 1.9 23 71-93 33-55 (353)
482 3euj_A Chromosome partition pr 93.7 0.08 2.8E-06 54.9 6.3 71 174-254 377-464 (483)
483 3gmt_A Adenylate kinase; ssgci 93.7 0.034 1.2E-06 52.0 3.2 23 71-93 10-32 (230)
484 3th5_A RAS-related C3 botulinu 92.8 0.012 4.1E-07 52.9 0.0 21 71-91 32-52 (204)
485 2hjg_A GTP-binding protein ENG 93.7 0.029 9.9E-07 57.3 2.9 23 71-93 5-27 (436)
486 3r7w_A Gtpase1, GTP-binding pr 93.6 0.038 1.3E-06 53.7 3.4 23 70-92 4-26 (307)
487 3gj0_A GTP-binding nuclear pro 93.6 0.024 8.1E-07 51.6 1.9 21 72-92 18-39 (221)
488 3pxi_A Negative regulator of g 93.5 0.17 5.7E-06 55.4 8.9 23 71-93 523-545 (758)
489 3l0i_B RAS-related protein RAB 93.5 0.008 2.7E-07 53.9 -1.5 23 71-93 35-57 (199)
490 1d2n_A N-ethylmaleimide-sensit 93.4 0.042 1.4E-06 52.0 3.3 26 67-92 62-87 (272)
491 3dm5_A SRP54, signal recogniti 93.3 0.049 1.7E-06 55.9 3.8 27 68-94 99-125 (443)
492 3geh_A MNME, tRNA modification 93.3 0.034 1.2E-06 57.5 2.6 25 68-92 223-247 (462)
493 2qgz_A Helicase loader, putati 93.3 0.049 1.7E-06 53.1 3.6 25 69-93 152-176 (308)
494 1f5n_A Interferon-induced guan 93.2 0.035 1.2E-06 59.1 2.7 34 57-93 29-62 (592)
495 3t15_A Ribulose bisphosphate c 93.2 0.041 1.4E-06 53.1 3.0 25 69-93 36-60 (293)
496 2qpt_A EH domain-containing pr 93.2 0.039 1.3E-06 58.3 2.9 24 70-93 66-89 (550)
497 3uk6_A RUVB-like 2; hexameric 93.2 0.046 1.6E-06 53.9 3.3 28 67-94 68-95 (368)
498 2v3c_C SRP54, signal recogniti 93.1 0.031 1.1E-06 57.2 2.0 25 70-94 100-124 (432)
499 1ofh_A ATP-dependent HSL prote 93.1 0.046 1.6E-06 52.2 3.1 25 69-93 50-74 (310)
500 3eie_A Vacuolar protein sortin 93.0 0.053 1.8E-06 52.8 3.5 27 67-93 49-75 (322)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=8.7e-53 Score=425.02 Aligned_cols=222 Identities=24% Similarity=0.378 Sum_probs=199.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
.+|+++||++.| . ++.+...+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 23 ~mi~v~~ls~~y-~-~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 23 HMIKLSNITKVF-H-QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSE 97 (366)
T ss_dssp CCEEEEEEEEEE-E-CSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCH
T ss_pred ceEEEEeEEEEe-C-CCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCH
Confidence 469999999994 2 1123467999999999999999999999999999999999999874 9999999997632
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.++.+|||||++.+++.+||+||+.|+.... ..+.++.++++.++++.+||.+.+++++.+|||||||||+|
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 1357999999999999999999999987654 34566777889999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||||+.+|++|||||||||||+.++..++++|++++++.|. |||++|||+ ..+..+||+|++|++|++++.|+++++
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~--Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL--TILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCC--EEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999876666 999999996 578999999999999999999999876
Q ss_pred H
Q 044030 268 N 268 (449)
Q Consensus 268 ~ 268 (449)
.
T Consensus 252 ~ 252 (366)
T 3tui_C 252 F 252 (366)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.5e-53 Score=426.11 Aligned_cols=217 Identities=25% Similarity=0.401 Sum_probs=195.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec----c-
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK----A- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~----~- 111 (449)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|++. .
T Consensus 4 ~l~i~~ls~~y------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSF------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCB
T ss_pred EEEEEeEEEEE------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 58999999983 5678999999999999999999999999999999999999874 99999999875 1
Q ss_pred --cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 112 --LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 112 --~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
...+.+|||||+..+||.+||+||+.|+...+ ..+.++.+++++++++.+||.+.+++++.+|||||||||+|||
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValAr 151 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALAR 151 (359)
T ss_dssp CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 12357999999999999999999999986543 2345566778999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++|||||||||||+..+..+++.|+++.++.|. |||++|||+ .++..+||+|++|++|+++..|+++++.
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~--tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK--SAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC--EEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999999999999999888766666 999999996 6899999999999999999999998764
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.6e-52 Score=425.44 Aligned_cols=217 Identities=27% Similarity=0.404 Sum_probs=199.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 3 ~l~~~~l~~~y------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAW------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred EEEEEeEEEEE------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHH
Confidence 48999999983 5678999999999999999999999999999999999999874 9999999998632 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.+|||||++.++|.+||+||+.|+...+ ..++++.+++++++++.+||.+.+++++.+|||||||||+|||||+.
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 367999999999999999999999988764 35567777889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||||||+..+..+++.|+++.++.|. |+|++|||+ .++..+||+|++|++|+++..|+++++.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~--tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR--TMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC--EEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 99999999999999999999999999999876666 999999996 6899999999999999999999998874
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.3e-52 Score=401.90 Aligned_cols=222 Identities=26% Similarity=0.371 Sum_probs=190.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+|+++||+++| .. ....+.+|+||||++++||++||+||||||||||||+|+|+++|. +|+|.++|.+....
T Consensus 1 ~l~~~~l~~~y-~~-~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 75 (235)
T 3tif_A 1 MVKLKNVTKTY-KM-GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDD 75 (235)
T ss_dssp CEEEEEEEEEE-EE-TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred CEEEEEEEEEe-CC-CCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHH
Confidence 37899999984 21 112356999999999999999999999999999999999999874 99999999875321
Q ss_pred ------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHH
Q 044030 114 ------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 114 ------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ 186 (449)
++.+|||+|++.+++.+||+||+.++.........+..+..+++.++++.++|.+. .++++.+|||||||||+
T Consensus 76 ~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 13599999999999999999999998765322234456667788999999999875 49999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
|||||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++|||+. +..+||++++|++|+++..+++++
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~--tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK--TVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC--EEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999865566 9999999963 568999999999999999998765
Q ss_pred H
Q 044030 267 A 267 (449)
Q Consensus 267 ~ 267 (449)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.3e-52 Score=407.73 Aligned_cols=218 Identities=27% Similarity=0.419 Sum_probs=192.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++. +. +...+|+||||+|++||+++|+||||||||||+|+|+|+++|. +|+|.++|++...
T Consensus 7 ~l~i~~ls~~-y~----~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 7 ILKVEELNYN-YS----DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKG 78 (275)
T ss_dssp EEEEEEEEEE-CT----TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHH
T ss_pred EEEEEEEEEE-EC----CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCccccc
Confidence 6899999998 31 2346999999999999999999999999999999999999874 9999999997631
Q ss_pred ---ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.+|||||++. .+..+||+||+.|+.... ..+.++.+++++++++.+||.+..++++.+|||||||||+||
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence 1246999999963 344789999999987653 345666778899999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++. ++..+||++++|++|++++.|+++++.
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~--tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI--TIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCC--EEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCC--EEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999733455 9999999975 688899999999999999999998764
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.3e-52 Score=402.23 Aligned_cols=216 Identities=28% Similarity=0.388 Sum_probs=191.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| +++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|.+...
T Consensus 6 ~l~i~~l~~~y------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 76 (262)
T 1b0u_A 6 KLHVIDLHKRY------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDK 76 (262)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECT
T ss_pred eEEEeeEEEEE------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccc
Confidence 58999999983 4567999999999999999999999999999999999999874 9999999987531
Q ss_pred --------------ccCcEEEEcCCCCCCCCCCHHHHHHHHH-hccCCCCCCHHHHHHHHHHHHHHcCCchh-hCccCCC
Q 044030 113 --------------AYGTSAYVTQDDTLITTLTVKEAVYYSA-QLQLPDTMPKSDKKERAEVTIREMGLQDA-MNTRIRR 176 (449)
Q Consensus 113 --------------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~ 176 (449)
.++.++||+|++.+++.+||+||+.++. ..+ ..+..+.+++++++++.+||.+. +++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 153 (262)
T 1b0u_A 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPVH 153 (262)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred cccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence 1246999999999999999999999864 332 23444556778999999999999 9999999
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 177 LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ .++..+||++++|++|
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~--tvi~vtHd~-~~~~~~~d~v~~l~~G 229 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GK--TMVVVTHEM-GFARHVSSHVIFLHQG 229 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TC--CEEEECSCH-HHHHHHCSEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999855 55 999999996 5788899999999999
Q ss_pred eEEEecChhhHH
Q 044030 257 QTVYFGPATAAN 268 (449)
Q Consensus 257 ~iv~~g~~~~~~ 268 (449)
++++.|+++++.
T Consensus 230 ~i~~~g~~~~~~ 241 (262)
T 1b0u_A 230 KIEEEGDPEQVF 241 (262)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEeCCHHHHH
Confidence 999999987663
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.1e-51 Score=401.56 Aligned_cols=216 Identities=25% Similarity=0.407 Sum_probs=192.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc---c-
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA---L- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~---~- 112 (449)
+|+++||++.| +++.+|+||||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. .
T Consensus 24 ~l~i~~l~~~y------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 24 MIDVHQLKKSF------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTN 94 (263)
T ss_dssp SEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCC
T ss_pred eEEEEeEEEEE------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCcccc
Confidence 59999999983 4567999999999999999999999999999999999999874 999999998763 1
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHH-hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSA-QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++||+|++.+++.+||+||+.|+. ... ..+..+.+++++++++.+||.+..++++.+|||||||||+||
T Consensus 95 ~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence 1245999999999999999999999964 332 234445567789999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ +++..+||++++|++|++++.|+++++.
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~--tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GM--TMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TC--EEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999855 55 999999996 5788899999999999999999987764
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.6e-51 Score=391.73 Aligned_cols=210 Identities=32% Similarity=0.439 Sum_probs=187.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 4 ~l~~~~l~~~y------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 4 ILRAENIKKVI------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHH
T ss_pred EEEEEeEEEEE------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999999874 99999999875321
Q ss_pred ------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 114 ------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 114 ------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.+.++||+|++.+++.+||+||+.++...+ ..+..+.+++++++++.+||.+..++++.+|||||||||+|
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred HHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 146999999999999999999999976543 23344556778999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ ..+ .+||++++|++|++++.|+
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~--tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GT--SIVMVTHER-ELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECSCH-HHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CC--EEEEEcCCH-HHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999999865 55 999999996 455 8999999999999999885
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.7e-51 Score=413.83 Aligned_cols=222 Identities=23% Similarity=0.408 Sum_probs=198.6
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
.....|+++||++. +. +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 10 ~~~~~l~~~~l~~~-y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~ 81 (355)
T 1z47_A 10 HGSMTIEFVGVEKI-YP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTD 81 (355)
T ss_dssp -CCEEEEEEEEEEC-CT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTT
T ss_pred CCCceEEEEEEEEE-Ec----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCc
Confidence 34567999999998 21 3467999999999999999999999999999999999999874 9999999987632
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.+||.+.+++++.+|||||||||+|||
T Consensus 82 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalAr 158 (355)
T 1z47_A 82 LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALAR 158 (355)
T ss_dssp CCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred CChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHH
Confidence 2467999999999999999999999987653 2445566778999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++|||||||||||+.++..+++.|++++++.|. |||++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV--TSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTC--EEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999866666 999999996 5789999999999999999999998764
No 10
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.3e-51 Score=415.47 Aligned_cols=217 Identities=26% Similarity=0.425 Sum_probs=196.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 3 GVRLVDVWKVF------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKG 73 (372)
T ss_dssp EEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGT
T ss_pred EEEEEeEEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECcccccc
Confidence 48999999983 4567999999999999999999999999999999999999874 9999999986421
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
..+.+|||||+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+.+++++.+|||||||||+|
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred ccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence 2357999999999999999999999987654 24455667789999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||||+.+|++|||||||||||+..+..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV--TTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999866666 999999996 578999999999999999999999877
Q ss_pred H
Q 044030 268 N 268 (449)
Q Consensus 268 ~ 268 (449)
.
T Consensus 228 ~ 228 (372)
T 1g29_1 228 Y 228 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2e-51 Score=415.53 Aligned_cols=217 Identities=26% Similarity=0.426 Sum_probs=194.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 3 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYF------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred EEEEEEEEEEE------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChh
Confidence 48999999983 4567999999999999999999999999999999999999874 9999999987632 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.+|||||+..++|++||+||+.|+...+ ..+..+.+++++++++.+||.+.+++++.+|||||||||+|||||+.
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 367999999999999999999999976543 23334445678999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||||||+..+..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI--TSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999866666 999999996 5788999999999999999999998774
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-51 Score=396.53 Aligned_cols=218 Identities=26% Similarity=0.389 Sum_probs=193.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|. +|+|.++|.+...
T Consensus 14 ~~l~i~~l~~~y------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 14 GAVVVKDLRKRI------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84 (256)
T ss_dssp CCEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHH
T ss_pred CeEEEEEEEEEE------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHH
Confidence 358999999983 4567999999999999999999999999999999999999874 9999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++.++||+|++.+++.+||+||+.+....+ ..+..+.+++++++++.+||.+..++++.+|||||||||+||+||
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 1357999999999999999999999876543 223444456788999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++ .++..+||++++|++|++++.|+++++.+
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~--tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GL--TILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC-CC--EEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999754 55 999999996 57888999999999999999999887643
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.4e-51 Score=414.28 Aligned_cols=217 Identities=25% Similarity=0.436 Sum_probs=196.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++. + +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 3 ~l~~~~l~~~-y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 3 EIKLENIVKK-F-----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CEEEEEEEEE-S-----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred EEEEEeEEEE-E-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHh
Confidence 4899999998 2 4567999999999999999999999999999999999999874 9999999987632 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.+|||||+..++|++||+||+.|+...+ ..+..+.+++++++++.+||.+.+++++.+|||||||||+|||||+.
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 367999999999999999999999987653 23455667789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||||||+..+..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI--TTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999866666 999999996 5789999999999999999999998774
No 14
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.7e-51 Score=414.40 Aligned_cols=217 Identities=25% Similarity=0.397 Sum_probs=195.4
Q ss_pred eEEEEeeEEEEeecCcccccc--eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSS--ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
+|+++||++.| +++. +|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~i~~l~~~y------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVF------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEE------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETT
T ss_pred EEEEEeEEEEE------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccc
Confidence 48999999983 4466 999999999999999999999999999999999999874 9999999986521
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 186 (449)
..+.+|||||+..+++++||+||+.|+...+ ..+.++.+++++++++.+||.+.+++++.+|||||||||+
T Consensus 74 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRva 150 (353)
T 1oxx_K 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA 150 (353)
T ss_dssp EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence 2357999999999999999999999986543 2445566778999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
|||||+.+|++|||||||+|||+..+..+++.|++++++.|. |+|++|||+ .++..+||++++|++|+++..|++++
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~ 227 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV--TLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPED 227 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999866666 999999996 57899999999999999999999987
Q ss_pred HH
Q 044030 267 AN 268 (449)
Q Consensus 267 ~~ 268 (449)
+.
T Consensus 228 l~ 229 (353)
T 1oxx_K 228 LY 229 (353)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2e-51 Score=398.81 Aligned_cols=217 Identities=22% Similarity=0.352 Sum_probs=190.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 7 ~l~i~~l~~~y------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 7 ILRTENIVKYF------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77 (257)
T ss_dssp EEEEEEEEEEE------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred EEEEeeeEEEE------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 58999999983 4567999999999999999999999999999999999999874 99999999876321
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHhc-cCCC---------CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQL-QLPD---------TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 180 (449)
++.++||+|++.+++.+||+||+.++... .... .....+.+++++++++.+||.+..++++.+||||
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 157 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHH
Confidence 23699999999999999999999987533 1110 0122344567899999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++. ++..+||++++|++|++++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~--tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GI--TFLIIEHRLD-IVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECSCCS-TTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CC--EEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999854 55 9999999974 6888999999999999999
Q ss_pred ecChhh
Q 044030 261 FGPATA 266 (449)
Q Consensus 261 ~g~~~~ 266 (449)
.|++++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 998877
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.9e-51 Score=398.62 Aligned_cols=215 Identities=24% Similarity=0.356 Sum_probs=192.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-- 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-- 113 (449)
..|+++||++.| +++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 10 ~~l~~~~l~~~~------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 10 ALLEASHLHYHV------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQP 80 (266)
T ss_dssp CEEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCH
T ss_pred ceEEEEeEEEEe------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCH
Confidence 469999999983 4578999999999999999999999999999999999999874 89999999986421
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.+.++|++|++.+++.+||+||+.++...+ ...+.+++++++++.+++.+..++++.+|||||||||+||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 246999999999988899999999876432 123345678999999999999999999999999999999999
Q ss_pred HHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 191 ILT------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 191 L~~------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+. +|++|||||||+|||+.++..+++.|++++++.| +|||++|||+ +++..+||++++|++|++++.|++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~--~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~ 232 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP--LAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTP 232 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSS--EEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCC--CEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 999 9999999999999999999999999999986644 4999999996 578899999999999999999999
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 233 ~~~ 235 (266)
T 4g1u_C 233 EEV 235 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.8e-51 Score=414.61 Aligned_cols=217 Identities=26% Similarity=0.423 Sum_probs=189.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 11 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 11 EVKLENLTKRF------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred eEEEEEEEEEE------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChh
Confidence 38999999983 4567999999999999999999999999999999999999874 9999999987632 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.+|||||+..+||++||+||+.|+...+ ..+.++.+++++++++.+||.+.+++++.+|||||||||+|||||+.
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 357999999999999999999999875432 24455667789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||||||+..+..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV--TTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999866666 999999996 5788999999999999999999998774
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.2e-51 Score=390.35 Aligned_cols=214 Identities=28% Similarity=0.401 Sum_probs=188.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+...
T Consensus 6 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 6 VLEVQSLHVYY------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred eEEEEeEEEEE------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999999874 9999999987632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-CchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG-LQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.++.++||+|++.+++.+||+||+.++.... ....+.++.++++++.++ +.+..++++.+|||||||||+||+
T Consensus 77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHH
Confidence 1245999999999999999999998864211 122344567888999995 999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~--tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGT--TILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC--CEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999975 455 999999996 578899999999999999999988765
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.9e-50 Score=407.14 Aligned_cols=212 Identities=24% Similarity=0.436 Sum_probs=190.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++||++. + +++ +|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .+
T Consensus 2 l~~~~l~~~-y-----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 2 IEIESLSRK-W-----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp EEEEEEEEE-C-----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHH
T ss_pred EEEEEEEEE-E-----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhh
Confidence 789999998 2 445 999999999999999999999999999999999999874 9999999987632 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.+|||||+..+||++||+||+.|+...+. .+.. ++++++++.+||++.+++++.+|||||||||+|||||+.+
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 569999999999999999999999876431 1222 6788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|++|||||||+|||+..+..+.+.|++++++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~--tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKL--TVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC--EEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999866666 999999996 5789999999999999999999998763
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-50 Score=385.99 Aligned_cols=211 Identities=22% Similarity=0.378 Sum_probs=186.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++||++.| ++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|+ +|+|.++|.+... .+
T Consensus 2 l~~~~l~~~y------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 2 FLKVRAEKRL------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPER 69 (240)
T ss_dssp CEEEEEEEEE------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTT
T ss_pred EEEEEEEEEe------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhh
Confidence 6899999983 22 59999999999 999999999999999999999999874 9999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++||+|++.+++.+||+||+.|+...+ . ....+++++++++.+||.+..++++.+|||||||||+||+||+.+
T Consensus 70 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 70 RGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 56999999999999999999998864321 1 122356788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|++|||||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~--tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV--PILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC--CEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999765555 999999996 5788999999999999999999987764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1e-49 Score=388.77 Aligned_cols=218 Identities=26% Similarity=0.360 Sum_probs=187.7
Q ss_pred eEEEEeeEEEEeecCcccc---cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-
Q 044030 37 FLTWKDLTVTIVSNGKKGS---SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~- 112 (449)
+|+++||++.| .. ++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y-~~---~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~ 74 (266)
T 2yz2_A 2 RIEVVNVSHIF-HR---GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGY 74 (266)
T ss_dssp CEEEEEEEEEE-ST---TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHH
T ss_pred EEEEEEEEEEe-cC---CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchH
Confidence 58999999983 10 12 57999999999999999999999999999999999999874 9999999987531
Q ss_pred -ccCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc--hhhCccCCCCChHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ--DAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 -~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++||+|++ .+++.+||+||+.++.... .+..+.+++++++++.+||. +..++++.+|||||||||+||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 75 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHH
T ss_pred HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHH
Confidence 235699999995 5667789999999865321 11222345688999999999 999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++. .+..+||++++|++|++++.|+++++.
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~--tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GK--TVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CC--EEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999755 55 9999999974 677899999999999999999987764
Q ss_pred H
Q 044030 269 E 269 (449)
Q Consensus 269 ~ 269 (449)
.
T Consensus 227 ~ 227 (266)
T 2yz2_A 227 E 227 (266)
T ss_dssp H
T ss_pred c
Confidence 3
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.3e-49 Score=382.90 Aligned_cols=216 Identities=22% Similarity=0.292 Sum_probs=180.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEecccc-
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR--LGSDTRQTGKILINGHKKALA- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~--~~~~~~~~G~I~~~g~~~~~~- 113 (449)
+|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+ ++| .+|+|.++|.+....
T Consensus 3 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 3 QLEIRDLWASI------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELS 73 (250)
T ss_dssp EEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSC
T ss_pred eEEEEeEEEEE------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCC
Confidence 48999999983 346799999999999999999999999999999999998 544 599999999875321
Q ss_pred -----cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-chhhCccCCC-CChHHHHHHH
Q 044030 114 -----YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL-QDAMNTRIRR-LSGGQKRRVS 186 (449)
Q Consensus 114 -----~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~~~-LSgGerqRv~ 186 (449)
...++|++|++.+++.+||+||+.++............+..+++.++++.+|| .+..++++.+ |||||||||+
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~ 153 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE 153 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHH
T ss_pred HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 23589999999999999999999886532111112233445678899999999 5889999998 9999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEecChh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~g~~~ 265 (449)
||+||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++. .+..+ ||++++|++|++++.|+++
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~--tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNF--GALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTC--EEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCC--EEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999974 444 9999999974 66677 5999999999999999986
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.4e-50 Score=391.34 Aligned_cols=221 Identities=23% Similarity=0.296 Sum_probs=186.4
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc--
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-- 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-- 111 (449)
..+.|+++||++.| +++.+|+||||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+..
T Consensus 18 ~~~~l~~~~l~~~y------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~ 88 (279)
T 2ihy_A 18 SHMLIQLDQIGRMK------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKV 88 (279)
T ss_dssp -CEEEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC--
T ss_pred CCceEEEEeEEEEE------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccc
Confidence 34579999999983 4467999999999999999999999999999999999999874 999999998653
Q ss_pred c-----ccCcEEEEcCCCCC--CCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 112 L-----AYGTSAYVTQDDTL--ITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 112 ~-----~~~~i~yv~Q~~~l--~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
. .++.++||+|++.+ .+.+||+||+.++...... ......+..++++++++.+||.+.+++++.+|||||||
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 89 GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp -CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred cCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence 1 13569999999754 3457999999875321100 01112334567889999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEE--EEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI--IASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ti--i~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |. || |++|||+ .++..+||++++|++|++++.
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~--tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YP--TLAMIYVTHFI-EEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CT--TCEEEEEESCG-GGCCTTCCEEEEEETTEEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CC--EEEEEEEecCH-HHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999865 55 99 9999996 467889999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++++
T Consensus 245 g~~~~~ 250 (279)
T 2ihy_A 245 GAVEDI 250 (279)
T ss_dssp EEHHHH
T ss_pred CCHHHH
Confidence 988765
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.9e-48 Score=377.00 Aligned_cols=210 Identities=29% Similarity=0.400 Sum_probs=183.5
Q ss_pred eEEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 37 FLTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
+|+++||++.| + ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|. +|+|.+ .+
T Consensus 4 ~l~i~~l~~~y------~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYY------QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQ 66 (253)
T ss_dssp EEEEEEEEEEE------TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CS
T ss_pred eEEEeeEEEEe------CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------ec
Confidence 58999999983 3 567999999999999999999999999999999999999874 999982 24
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
.++||+|++.+++.+||+||+.++....... .......+++++++++.+||.+..++++.+|||||||||+||+||+.+
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 146 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASE 146 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTT
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999875322110 011234456789999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++..+||++++|++|+ ++.|+++++
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~--tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 147 CKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM--TVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp CSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC--EEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999999999999999999999999855466 999999996 57889999999999999 999988765
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.3e-48 Score=378.19 Aligned_cols=221 Identities=27% Similarity=0.318 Sum_probs=185.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+|+++||++.| +++.+|+||||+|++||+++|+||||||||||+|+|+|+... .+.+|+|.++|.+....
T Consensus 20 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~ 92 (267)
T 2zu0_C 20 MLSIKDLHVSV------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDLLALSPE 92 (267)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEGGGSCHH
T ss_pred eEEEEeEEEEE------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEECCcCCHH
Confidence 59999999983 456799999999999999999999999999999999998421 12589999999875321
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHh-c---cCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCC-CCChHHHHH
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQ-L---QLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIR-RLSGGQKRR 184 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~LSgGerqR 184 (449)
.+.++||+|++.+++.+||.|++.+... . ......+..+..++++++++.+||. +..++++. +||||||||
T Consensus 93 ~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QR 172 (267)
T 2zu0_C 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 172 (267)
T ss_dssp HHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHH
T ss_pred HHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 1249999999999999999999987542 1 1111123344456789999999996 57899997 599999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEecC
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~g~ 263 (449)
|+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++|||+. .+..+ ||++++|++|++++.|+
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~--tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKR--SFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSC--EEEEECSSGG-GGGTSCCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC--EEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999864 355 9999999964 56665 89999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
++++.
T Consensus 249 ~~~~~ 253 (267)
T 2zu0_C 249 FTLVK 253 (267)
T ss_dssp TTHHH
T ss_pred HHHHh
Confidence 88764
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.1e-48 Score=382.22 Aligned_cols=217 Identities=24% Similarity=0.353 Sum_probs=181.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++. +. + .+.+.+|+||||+|++||+++|+||||||||||||+|+|+++|. +|+|.++|.+...
T Consensus 16 ~l~~~~l~~~-y~-~-~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 16 LVKFQDVSFA-YP-N-HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHH 89 (271)
T ss_dssp CEEEEEEEEC-CT-T-CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEE-eC-C-CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHH
Confidence 5999999998 21 1 01267999999999999999999999999999999999999874 9999999987632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHH-----HHHHHHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSD-----KKERAEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
.++.++||+|++.+++ .||+||+.++.... . .... ....+.++++.+ |+....++++.+||||||||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QR 164 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA 164 (271)
T ss_dssp HHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHH
T ss_pred HHhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHH
Confidence 1246999999998887 59999998864211 1 1011 122356778888 78888899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ ..+ ..||++++|++|+++..|++
T Consensus 165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~--tviivtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASR--TVLLITQQL-SLA-ERAHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTS--EEEEECSCH-HHH-TTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCC--EEEEEeCCH-HHH-HhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999998754455 999999996 345 45999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 241 ~~l~ 244 (271)
T 2ixe_A 241 LQLM 244 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.2e-47 Score=370.54 Aligned_cols=205 Identities=26% Similarity=0.396 Sum_probs=182.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++. .+|+|+||++++||+++|+||||||||||||+|+|+++| . |+|.++|.+...
T Consensus 4 ~l~~~~l~~~----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~ 69 (249)
T 2qi9_C 4 VMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSAT 69 (249)
T ss_dssp EEEEEEEEET----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHH
T ss_pred EEEEEceEEE----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHH
Confidence 5889999862 589999999999999999999999999999999999876 6 999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++.++||+|++.+++.+||+||+.++... ... +++++++++.+||.+..++++.+|||||||||+||+||
T Consensus 70 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 141 (249)
T 2qi9_C 70 KLALHRAYLSQQQTPPFATPVWHYLTLHQHD----KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 141 (249)
T ss_dssp HHHHHEEEECSCCCCCTTCBHHHHHHTTCSS----TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHhceEEEECCCCccCCCCcHHHHHHHhhcc----CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 124699999999999999999999875211 111 45688999999999999999999999999999999999
Q ss_pred HhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 192 LTRPK-------LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 192 ~~~P~-------llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+.+|+ +|||||||+|||+.++..+++.|++++++ |. |||++|||+ ..+..+||++++|++|++++.|++
T Consensus 142 ~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~--tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 142 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GL--AIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp HHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999 99999999999999999999999999755 55 999999996 577899999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 218 ~~~ 220 (249)
T 2qi9_C 218 EEV 220 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.2e-48 Score=382.50 Aligned_cols=210 Identities=27% Similarity=0.404 Sum_probs=175.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||++. +. +.+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 52 ~~i~~~~vs~~-y~----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 52 GRIEFENVHFS-YA----DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CCEEEEEEEEE-SS----TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCH
T ss_pred CeEEEEEEEEE-cC----CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCH
Confidence 36999999998 32 3467999999999999999999999999999999999999874 9999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-----------CchhhCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG-----------LQDAMNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~~~~~~~~LSg 179 (449)
.++.++||+|++.+|+. ||+||+.|+... ... +.+.+.++..+ ++...++.+.+|||
T Consensus 124 ~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSG 193 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLFND-TIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193 (306)
T ss_dssp HHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCH
T ss_pred HHHhcceEEEecCCccCcc-cHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCH
Confidence 13469999999999864 999999886421 112 22333444444 44445566689999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+|||||+.+|+||||||||||||+.++..|++.|+++.+ ++ |+|++||++ +.+.. ||+|++|++|+++
T Consensus 194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~--Tvi~itH~l-~~~~~-aD~i~vl~~G~iv 267 (306)
T 3nh6_A 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NR--TTIVVAHRL-STVVN-ADQILVIKDGCIV 267 (306)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TS--EEEEECCSH-HHHHT-CSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CC--EEEEEEcCh-HHHHc-CCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999873 34 999999996 45654 9999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
+.|+++++..
T Consensus 268 ~~G~~~el~~ 277 (306)
T 3nh6_A 268 ERGRHEALLS 277 (306)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999988753
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.6e-47 Score=369.30 Aligned_cols=209 Identities=27% Similarity=0.430 Sum_probs=175.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++. +. .+++.+|+||||+|++||+++|+||||||||||||+|+|+++|. +|+|.++|.+...
T Consensus 7 ~~~~~~l~~~-y~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFR-YK---PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEE-SS---TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEE-eC---CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 5899999998 21 12467999999999999999999999999999999999999874 9999999987632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhC-----------ccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN-----------TRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~~~~LSgG 180 (449)
.++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+..+ +++.+||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 149 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG 149 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHH
Confidence 1246999999998886 599999987521 111 234566777777765554 445899999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + |. |||++||++. .+ ..||++++|++|++++
T Consensus 150 q~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~--tviivtH~~~-~~-~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GR--TVIIIAHRLS-TV-KNADRIIVMEKGKIVE 223 (247)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TS--EEEEECSSGG-GG-TTSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CC--EEEEEeCCHH-HH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999995 4 44 9999999974 45 4699999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 224 ~g~~~~l~ 231 (247)
T 2ff7_A 224 QGKHKELL 231 (247)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99987763
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-48 Score=365.12 Aligned_cols=204 Identities=24% Similarity=0.343 Sum_probs=175.2
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
.+..|+++||++. + ++ .+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|.+....
T Consensus 7 ~~~~l~~~~ls~~-y-----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~ 76 (214)
T 1sgw_A 7 HGSKLEIRDLSVG-Y-----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV 76 (214)
T ss_dssp --CEEEEEEEEEE-S-----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG
T ss_pred CCceEEEEEEEEE-e-----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhh
Confidence 4567999999998 2 34 7999999999999999999999999999999999999874 99999999876422
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
++.++||+|++.+++.+||+||+.++...+. . ..+ +++++++++.+||.+. ++++.+|||||||||+||+||+.
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~ 150 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYG---V-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLV 150 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---C-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTS
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---C-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHh
Confidence 3579999999999999999999998765431 1 112 4568889999999988 99999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+|++|||||||+|||+.++..+++.|++++++ |. |||++||++. ++..+||+++++. |+|
T Consensus 151 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~--tiiivtHd~~-~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 151 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KG--IVIISSREEL-SYCDVNENLHKYS-TKI 210 (214)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HS--EEEEEESSCC-TTSSEEEEGGGGB-C--
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCHH-HHHHhCCEEEEeC-Ccc
Confidence 99999999999999999999999999999754 45 9999999975 6888889888654 443
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.4e-47 Score=368.10 Aligned_cols=208 Identities=25% Similarity=0.346 Sum_probs=181.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--ccC
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AYG 115 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~ 115 (449)
|+++||++.| .. ..+.+.+|+|+||+++ ||+++|+||||||||||||+|+|++ |+ +|+|.++|.+... .++
T Consensus 2 l~~~~l~~~y-~~-~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 2 IQLKNVGITL-SG-KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEE-EE-ETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCT
T ss_pred EEEEEEEEEe-CC-CCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhh
Confidence 7899999983 21 0011679999999999 9999999999999999999999999 84 9999999987531 135
Q ss_pred cEE-EEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 116 TSA-YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 116 ~i~-yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.++ ||+|++.+ .+||+||+.++..++ .. .+++++++++.+||. +..++++.+|||||||||+||+||+.
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~ 145 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS 145 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 799 99999887 789999999876542 11 135688899999999 99999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcC-eEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH-NLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D-~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||+|||+.++..+++.|++++ . |||++|||+ .++..+|| ++++|++|++++.|+++++.
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~-----~-tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYG-----K-EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSC-----S-EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhc-----C-cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999874 2 999999996 46788999 99999999999999998765
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-47 Score=367.17 Aligned_cols=208 Identities=26% Similarity=0.386 Sum_probs=176.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++. +. +++.+|+||||+|++||+++|+||||||||||||+|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~-y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 2 LSARHVDFA-YD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73 (243)
T ss_dssp EEEEEEEEC-SS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSC
T ss_pred EEEEEEEEE-eC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHH
Confidence 789999997 21 3467999999999999999999999999999999999999874 8999999987531
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc-----------cCCCCChHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT-----------RIRRLSGGQ 181 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~~~~LSgGe 181 (449)
.++.++||+|++.+++. ||+||+.++... ... ++++.++++.+++.+..++ ++.+|||||
T Consensus 74 ~~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp CTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred HHhhEEEEcCCCccccc-cHHHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence 13569999999988874 999999775211 111 2346778888888776554 457999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + |. |||++||++ ..+ ..||++++|++|++++.
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~--tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~ 218 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GR--TTLVIAHRL-STI-VDADKIYFIEKGQITGS 218 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TS--EEEEECCSH-HHH-HHCSEEEEEETTEECCC
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CC--EEEEEeCCh-HHH-HhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999997 4 44 999999996 345 46999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|+++++.
T Consensus 219 g~~~~~~ 225 (243)
T 1mv5_A 219 GKHNELV 225 (243)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
Confidence 9987764
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.9e-46 Score=361.54 Aligned_cols=210 Identities=25% Similarity=0.378 Sum_probs=174.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||++. +. + ...+.+|+||||+|++||+++|+||||||||||+|+|+|++++ +|+|.++|.+...
T Consensus 16 ~~l~i~~l~~~-y~-~-~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 16 VNIEFSDVNFS-YP-K-QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CCEEEEEEEEC-CT-T-CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCH
T ss_pred CeEEEEEEEEE-eC-C-CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCH
Confidence 35899999998 21 1 0124699999999999999999999999999999999999853 7999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------CccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSg 179 (449)
.++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+.. ++++.+|||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSg 158 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSG 158 (260)
T ss_dssp HHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCH
T ss_pred HHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCH
Confidence 1356999999999886 599999987521 111 23456677777765432 456789999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + |. |||++||++. .+ ..||++++|++|+++
T Consensus 159 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~--tviivtH~~~-~~-~~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NR--TLIIIAHRLS-TI-SSAESIILLNKGKIV 232 (260)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TS--EEEEECSSGG-GS-TTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEcCCHH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999996 3 44 9999999974 45 469999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
..|+++++.
T Consensus 233 ~~g~~~~l~ 241 (260)
T 2ghi_A 233 EKGTHKDLL 241 (260)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999988764
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.8e-45 Score=351.09 Aligned_cols=200 Identities=24% Similarity=0.395 Sum_probs=165.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|+++||++. +. .+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|. +|+|.++| .
T Consensus 6 ~l~~~~l~~~-y~---~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~ 70 (229)
T 2pze_A 6 EVVMENVTAF-WE---EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------R 70 (229)
T ss_dssp EEEEEEEEEC-SS---TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------C
T ss_pred eEEEEEEEEE-eC---CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------E
Confidence 5899999998 21 13467999999999999999999999999999999999999874 99999998 3
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------CccCCCCChHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSGGQKRRV 185 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSgGerqRv 185 (449)
++|++|++.+++. ||+||+.++.. ... ....+.++.+++.+.. ++++.+|||||||||
T Consensus 71 i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv 139 (229)
T 2pze_A 71 ISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 139 (229)
T ss_dssp EEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHH
T ss_pred EEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHH
Confidence 8999999998886 99999987531 111 1233445555554433 334589999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSR-IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~-l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+|||||+.+|+++||||||+|||+.++..+++. +++++ + |. |||++||++ ..+ ..||++++|++|++++.|++
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~-~~--tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~ 213 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NK--TRILVTSKM-EHL-KKADKILILHEGSSYFYGTF 213 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-T-TS--EEEEECCCH-HHH-HHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-C-CC--EEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999997 45554 3 44 999999996 455 46999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 214 ~~~~ 217 (229)
T 2pze_A 214 SELQ 217 (229)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-46 Score=381.64 Aligned_cols=208 Identities=22% Similarity=0.308 Sum_probs=180.2
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||+++ +. .+++.+|+||||+|++||+++|+||||||||||||+|+|+++ .+|+|.++|++...
T Consensus 18 ~~i~~~~l~~~-y~---~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAK-YT---EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEE-SS---SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEE-ec---CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcCCh
Confidence 46899999998 32 145679999999999999999999999999999999999975 38999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCC-----------CCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR-----------LSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~-----------LSg 179 (449)
.++.++||||++.+|+ +||+||+.+.. .. .++++.++++.++|.+..++++.+ |||
T Consensus 90 ~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSG 158 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSH 158 (390)
T ss_dssp HHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCH
T ss_pred HHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCH
Confidence 1256999999999997 59999995321 11 134578899999999999999988 999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+|||||+.+|++|||||||||||+..+..+.+.|+++. . + +|+|++|||+. ....||+|++|++|+++
T Consensus 159 GqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~-~--~tvi~vtHd~e--~~~~aDri~vl~~G~i~ 232 (390)
T 3gd7_A 159 GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-A-D--CTVILCEARIE--AMLECDQFLVIEENKVR 232 (390)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-T-T--SCEEEECSSSG--GGTTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-C-C--CEEEEEEcCHH--HHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999864 2 3 49999999963 45679999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
..|+++++.
T Consensus 233 ~~g~~~el~ 241 (390)
T 3gd7_A 233 QYDSILELY 241 (390)
T ss_dssp EESSHHHHH
T ss_pred EECCHHHHH
Confidence 999998874
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.5e-45 Score=353.44 Aligned_cols=203 Identities=23% Similarity=0.368 Sum_probs=164.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|+++||++. +. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++| .
T Consensus 3 ~l~~~~l~~~-y~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g--------~ 67 (237)
T 2cbz_A 3 SITVRNATFT-WA---RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG--------S 67 (237)
T ss_dssp CEEEEEEEEE-SC---TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS--------C
T ss_pred eEEEEEEEEE-eC---CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC--------E
Confidence 4899999998 21 1146799999999999999999999999999999999999977 499999998 3
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHH---HHHHcCCc-----hhhCccCCCCChHHHHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV---TIREMGLQ-----DAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~-----~~~~~~~~~LSgGerqRv~ia 188 (449)
++||+|++.+ +.+||+||+.++... .... .+++.+ +.+.+++. ...++++.+|||||||||+||
T Consensus 68 i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 68 VAYVPQQAWI-QNDSLRENILFGCQL------EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp EEEECSSCCC-CSEEHHHHHHTTSCC------CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHH
T ss_pred EEEEcCCCcC-CCcCHHHHhhCcccc------CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 8999999865 578999999875321 1111 111111 22233321 135788899999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIA---KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~---~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
|||+.+|++|||||||+|||+.++..+++.|. +++ + |. |||++||++. .+ ..||++++|++|+++..|+++
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~-~~--tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~ 213 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-K-NK--TRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQ 213 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-T-TS--EEEEECSCST-TG-GGSSEEEEEETTEEEEEECHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-C-CC--EEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999995 343 2 44 9999999975 44 579999999999999999988
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 214 ~~~ 216 (237)
T 2cbz_A 214 ELL 216 (237)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-44 Score=388.18 Aligned_cols=215 Identities=23% Similarity=0.392 Sum_probs=176.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|++++ +. .+.+.+|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 340 ~~i~~~~v~~~-y~---~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~ 412 (587)
T 3qf4_A 340 GSVSFENVEFR-YF---ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKL 412 (587)
T ss_dssp CCEEEEEEEEC-SS---SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCH
T ss_pred CcEEEEEEEEE-cC---CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCH
Confidence 46999999998 32 13467999999999999999999999999999999999999874 9999999987642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.++||+|++.+++. ||+||+.++.. ..+.++..+. +.+.++.+ |++...++++.+|||||||
T Consensus 413 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ 486 (587)
T 3qf4_A 413 KDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486 (587)
T ss_dssp HHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH
T ss_pred HHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH
Confidence 13569999999999976 99999977532 1122221111 12223333 5555667778999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||+.+|++++||||||+||+.++..+.+.|+++. + | +|+|++||+++ . ...||+|++|++|++++.|+
T Consensus 487 rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~--~tvi~itH~l~-~-~~~~d~i~vl~~G~i~~~g~ 560 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-K-G--CTTFIITQKIP-T-ALLADKILVLHEGKVAGFGT 560 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-T-T--CEEEEEESCHH-H-HTTSSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-C-C--CEEEEEecChH-H-HHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999985 3 4 49999999974 4 46899999999999999999
Q ss_pred hhhHHH
Q 044030 264 ATAANE 269 (449)
Q Consensus 264 ~~~~~~ 269 (449)
++++.+
T Consensus 561 ~~el~~ 566 (587)
T 3qf4_A 561 HKELLE 566 (587)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988753
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.7e-43 Score=378.73 Aligned_cols=211 Identities=25% Similarity=0.358 Sum_probs=177.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||+++| .. +++.+|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.+||.+...
T Consensus 340 ~~i~~~~v~~~y-~~---~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 340 GEVDVKDVTFTY-QG---KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKL 412 (582)
T ss_pred CeEEEEEEEEEc-CC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCH
Confidence 369999999983 21 1267999999999999999999999999999999999999874 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhC-----------ccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN-----------TRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~~~~LSg 179 (449)
.++.++||+|++.+++. ||+||+.++.. + ..+ +++++++++.+++.+..+ +++.+|||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSg 483 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483 (582)
T ss_pred HHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCH
Confidence 13579999999999875 99999988531 1 112 234666777776665544 34579999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+.+|++++|||||||||+.++..+.+.|++++ + |+ |+|++||++. .+ +.||++++|++|+++
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~--tvi~itH~~~-~~-~~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NK--TVLVIAHRLS-TI-EQADEILVVDEGEII 557 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CC--EEEEEecCHH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999986 3 44 9999999974 44 579999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
+.|+++++.
T Consensus 558 ~~g~~~~l~ 566 (582)
T 3b5x_A 558 ERGRHADLL 566 (582)
T ss_pred EECCHHHHH
Confidence 999998764
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.2e-43 Score=379.09 Aligned_cols=210 Identities=27% Similarity=0.387 Sum_probs=174.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|++++ +. .+.+.+|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 338 ~~i~~~~v~~~-y~---~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~ 410 (578)
T 4a82_A 338 GRIDIDHVSFQ-YN---DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLT 410 (578)
T ss_dssp CCEEEEEEEEC-SC---SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEE-cC---CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCH
Confidence 46999999998 32 13457999999999999999999999999999999999999874 9999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-----------MNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LSg 179 (449)
.++.++||+|++.+++. ||+||+.++.. ..+. +++.+.++..++.+. .+++..+|||
T Consensus 411 ~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSg 480 (578)
T 4a82_A 411 GSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480 (578)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred HHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCH
Confidence 13469999999999987 99999987631 1122 234455555555433 3444578999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+.+|++++|||||||||+.++..+.+.|+++.+ ++|+|++||+++ .+ ..||++++|++|+++
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~----~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~ 554 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK----DRTTLIVAHRLS-TI-THADKIVVIENGHIV 554 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT----TSEEEEECSSGG-GT-TTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC----CCEEEEEecCHH-HH-HcCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999863 349999999975 44 569999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
+.|+++++.
T Consensus 555 ~~g~~~el~ 563 (578)
T 4a82_A 555 ETGTHRELI 563 (578)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999998875
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.6e-43 Score=378.68 Aligned_cols=212 Identities=27% Similarity=0.428 Sum_probs=175.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++||++.| . + ..++.+|+|+||++++||++||+||||||||||+|+|+|+++|. +|+|.++|.+...
T Consensus 342 i~~~~v~~~y-~-~-~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~ 415 (595)
T 2yl4_A 342 LEFKNVHFAY-P-A-RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVW 415 (595)
T ss_dssp EEEEEEEEEC-S-S-CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEe-C-C-CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHH
Confidence 9999999983 2 1 11246999999999999999999999999999999999999874 9999999998632
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-------Ccc----CCCCChHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-------NTR----IRRLSGGQ 181 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----~~~LSgGe 181 (449)
.++.++||+|++.+++. ||+||+.++.... ... .+++++++++.+++.+.. |+. +.+|||||
T Consensus 416 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq 488 (595)
T 2yl4_A 416 LRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSV----TAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ 488 (595)
T ss_dssp HHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTS----CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHH
T ss_pred HHhceEEEccCCcccCC-CHHHHHhhcCCCc--ccc----CHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHH
Confidence 12469999999999875 9999998864211 011 134567788888875543 333 38999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++|||||+.+|++++||||||+||+.++..+.+.|+++.+ |+ |+|++||++ +.+ +.||++++|++|++++.
T Consensus 489 ~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~--tvi~itH~~-~~~-~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GR--TVLVIAHRL-STI-KNANMVAVLDQGKITEY 562 (595)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TS--EEEEECCCH-HHH-HHSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CC--EEEEEecCH-HHH-HcCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999974 44 999999996 345 56999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|+++++.
T Consensus 563 g~~~~l~ 569 (595)
T 2yl4_A 563 GKHEELL 569 (595)
T ss_dssp ECSCC--
T ss_pred CCHHHHH
Confidence 9988764
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.9e-43 Score=378.49 Aligned_cols=212 Identities=25% Similarity=0.361 Sum_probs=177.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||++. +. + +++.+|+|+||++++||++||+||||||||||+|+|+|+++|+ +|+|.+||.+...
T Consensus 340 ~~i~~~~v~~~-y~-~--~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 340 GDLEFRNVTFT-YP-G--REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTL 412 (582)
T ss_dssp CCEEEEEEEEC-SS-S--SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCH
T ss_pred CcEEEEEEEEE-cC-C--CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCH
Confidence 35999999998 21 0 1267999999999999999999999999999999999999874 9999999998632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------CccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSg 179 (449)
.++.++||+|++.+++. ||+||+.++.. + ..+ ++++.++++.+++.+.. ++++.+|||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSg 483 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG 483 (582)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCH
T ss_pred HHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCH
Confidence 12469999999999885 99999988531 1 122 23456667766665543 345589999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+.+|++++||||||+||+.++..+.+.|++++ + |+ |+|++||++. .+ +.||++++|++|+++
T Consensus 484 Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~--tvi~itH~~~-~~-~~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NR--TSLVIAHRLS-TI-EQADEIVVVEDGIIV 557 (582)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TS--EEEEECSCGG-GT-TTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CC--EEEEEeccHH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999996 3 44 9999999974 44 579999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
+.|+++++.+
T Consensus 558 ~~g~~~~l~~ 567 (582)
T 3b60_A 558 ERGTHSELLA 567 (582)
T ss_dssp EEECHHHHHH
T ss_pred EecCHHHHHH
Confidence 9999987753
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.6e-43 Score=347.17 Aligned_cols=195 Identities=24% Similarity=0.408 Sum_probs=152.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|+++||++. .+.+|+|+||+|++||+++|+||||||||||||+|+|+++| .+|+|.++| .
T Consensus 40 ~l~~~~l~~~--------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g--------~ 100 (290)
T 2bbs_A 40 SLSFSNFSLL--------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG--------R 100 (290)
T ss_dssp ------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS--------C
T ss_pred eEEEEEEEEc--------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC--------E
Confidence 5899999975 14699999999999999999999999999999999999977 499999998 3
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------CccCCCCChHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSGGQKRRV 185 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSgGerqRv 185 (449)
++||+|++.+++. ||+||+. +. . ... ..+.+.++.+++.+.. ++++.+|||||||||
T Consensus 101 i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv 168 (290)
T 2bbs_A 101 ISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168 (290)
T ss_dssp EEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHH
T ss_pred EEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHH
Confidence 8999999988885 9999997 32 1 111 1233445555664433 234589999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI-AKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l-~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+|||||+.+|+++||||||+|||+.++..+++.+ ++++ + |+ |||++||++ ..+ ..||++++|++|++++.|++
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~-~~--tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NK--TRILVTSKM-EHL-KKADKILILHEGSSYFYGTF 242 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-T-TS--EEEEECCCH-HHH-HHSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-C-CC--EEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999974 5554 3 44 999999996 445 56999999999999999999
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 243 ~~l~ 246 (290)
T 2bbs_A 243 SELQ 246 (290)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-43 Score=380.08 Aligned_cols=210 Identities=28% Similarity=0.387 Sum_probs=174.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-- 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-- 113 (449)
-.++++||++. +. +++.+|+|+||++++||++||+||||||||||+|+|+|+++|+ +|+|.+||.+....
T Consensus 353 ~~i~~~~v~~~-y~----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~ 424 (598)
T 3qf4_B 353 GEIEFKNVWFS-YD----KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKR 424 (598)
T ss_dssp CCEEEEEEECC-SS----SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEE-CC----CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCH
Confidence 35999999998 22 3457999999999999999999999999999999999999874 99999999986421
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCcc-----------CCCCCh
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR-----------IRRLSG 179 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----------~~~LSg 179 (449)
++.++||+|++.+++. ||+||+.++.. ..+. +++.+.++..++.+..+.. ..+|||
T Consensus 425 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 494 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFST-TVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQ 494 (598)
T ss_dssp HHHHHHEEEECTTCCCCSS-BHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCH
T ss_pred HHHHhceEEEeCCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCH
Confidence 3469999999999875 99999987531 1122 2244455555555444433 378999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. + | +|+|++||+++ .+ ..||+|++|++|+++
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~--~t~i~itH~l~-~~-~~~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-E-G--KTSIIIAHRLN-TI-KNADLIIVLRDGEIV 568 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-T-T--SEEEEESCCTT-HH-HHCSEEEEECSSSEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-C-C--CEEEEEecCHH-HH-HcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999986 3 4 49999999985 45 459999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
+.|+++++.+
T Consensus 569 ~~g~~~~l~~ 578 (598)
T 3qf4_B 569 EMGKHDELIQ 578 (598)
T ss_dssp ECSCHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999988753
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.2e-41 Score=389.51 Aligned_cols=214 Identities=28% Similarity=0.442 Sum_probs=178.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| +. ..+.++|+||||+|++||.+||+||||||||||+++|.|++.|. +|+|.+||.++..
T Consensus 1075 g~I~f~nVsf~Y-~~--~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~ 1148 (1321)
T 4f4c_A 1075 GKVIFKNVRFAY-PE--RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNP 1148 (1321)
T ss_dssp CCEEEEEEEECC-TT--SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCH
T ss_pred CeEEEEEEEEeC-CC--CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCH
Confidence 369999999983 21 13457999999999999999999999999999999999999874 8999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-------hhCccC----CCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-------AMNTRI----RRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~~----~~LSg 179 (449)
.+++++||||++.+|+. |++|||.|+... ...+ ++++.+.++..++.+ -.|+.+ .+|||
T Consensus 1149 ~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~---~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSg 1220 (1321)
T 4f4c_A 1149 EHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP---SSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSG 1220 (1321)
T ss_dssp HHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT---TTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCH
T ss_pred HHHHhheEEECCCCEeeCc-cHHHHHhccCCC---CCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCH
Confidence 24679999999999987 999999776321 1222 234556666666543 244444 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+++|+||+||||||+||+.+...|.+.|+++.+ |+|+|+++|.++ ....||+|+||++|+++
T Consensus 1221 GQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~----~~TvI~IAHRLs--Ti~~aD~I~Vld~G~Iv 1294 (1321)
T 4f4c_A 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE----GRTCIVIAHRLN--TVMNADCIAVVSNGTII 1294 (1321)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS----SSEEEEECSSSS--TTTTCSEEEEESSSSEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC----CCEEEEeccCHH--HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998753 459999999985 35679999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
++|+++++.+
T Consensus 1295 E~Gth~eLl~ 1304 (1321)
T 4f4c_A 1295 EKGTHTQLMS 1304 (1321)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999998864
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.9e-40 Score=384.88 Aligned_cols=211 Identities=27% Similarity=0.369 Sum_probs=176.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||++.| .. ..++++|+|+||+|++|+.+||+||||||||||+++|.|+++| .+|+|.+||.++..
T Consensus 414 g~I~~~nvsF~Y-~~--~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~ 487 (1321)
T 4f4c_A 414 GDITVENVHFTY-PS--RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINL 487 (1321)
T ss_dssp CCEEEEEEEECC-SS--STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCH
T ss_pred CcEEEEEeeeeC-CC--CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccH
Confidence 369999999983 21 1356899999999999999999999999999999999999987 49999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSg 179 (449)
.++.++||+|++.+|.. |++|||.|+.. ..+. +++.+.++..++.+ .......+|||
T Consensus 488 ~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSG 557 (1321)
T 4f4c_A 488 EFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSG 557 (1321)
T ss_dssp HHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCH
T ss_pred HHHhhcccccCCcceeeCC-chhHHHhhhcc-----cchH----HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCH
Confidence 13579999999999987 99999988732 1222 33445555544432 23334468999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++||||++++|+|+|||||||+||+.+...+.+.|.++.+ |+|+|+++|+++ ..+.||+|++|++|+++
T Consensus 558 GQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~----~~T~iiiaHrls--~i~~aD~Iivl~~G~iv 631 (1321)
T 4f4c_A 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK----GRTTIIIAHRLS--TIRNADLIISCKNGQVV 631 (1321)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT----TSEEEEECSCTT--TTTTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC----CCEEEEEcccHH--HHHhCCEEEEeeCCeee
Confidence 999999999999999999999999999999999999999999874 459999999985 46789999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
+.|+.+++.
T Consensus 632 e~Gth~eL~ 640 (1321)
T 4f4c_A 632 EVGDHRALM 640 (1321)
T ss_dssp EEECHHHHH
T ss_pred ccCCHHHHH
Confidence 999998875
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.7e-40 Score=347.83 Aligned_cols=207 Identities=27% Similarity=0.325 Sum_probs=178.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++++|+++.| ++ ..|+++||+|++||++||+||||||||||+|+|+|+++|. +|+|.+.
T Consensus 285 ~~~l~~~~l~~~~------~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~-------- 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDY------GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWD-------- 346 (538)
T ss_dssp CEEEEECCEEEEE------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCCC--------
T ss_pred CeEEEEeeEEEEE------CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEC--------
Confidence 4679999999872 22 3699999999999999999999999999999999999874 8999761
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
..++|++|+....+.+||.|++........ ...+++.++++.+++.+..++++.+|||||||||+||+||+.+
T Consensus 347 ~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 347 LTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred ceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 359999999888788999998865411100 0134578899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC--CeEEEecChhhHHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA--GQTVYFGPATAANE 269 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~--G~iv~~g~~~~~~~ 269 (449)
|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++..+||++++|++ |+++..|+++++..
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~--tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK--TALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTC--EEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999755555 999999996 678999999999986 78888999987654
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.4e-39 Score=350.16 Aligned_cols=207 Identities=25% Similarity=0.312 Sum_probs=179.3
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++++|+++. + ++ ..|+++||++++||++||+||||||||||||+|+|+++|. +|+|.+.
T Consensus 355 ~~~l~~~~l~~~-~-----~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~-------- 416 (607)
T 3bk7_A 355 ETLVEYPRLVKD-Y-----GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD-------- 416 (607)
T ss_dssp CEEEEECCEEEE-C-----SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC--------
T ss_pred ceEEEEeceEEE-e-----cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe--------
Confidence 467999999987 2 23 3799999999999999999999999999999999999874 8998761
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
..++|+||+....+.+||.|++....... ....+++.++++.+|+.+.+++++.+|||||||||+||+||+.+
T Consensus 417 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 417 LTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred eEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 35999999988888899999887641110 01135678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC--CeEEEecChhhHHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA--GQTVYFGPATAANE 269 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~--G~iv~~g~~~~~~~ 269 (449)
|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++..+||++++|++ |+++..|+++++..
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK--TALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTC--EEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999865555 999999996 578899999999986 88888999987654
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.5e-40 Score=380.86 Aligned_cols=216 Identities=26% Similarity=0.370 Sum_probs=175.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| .. ..+.++|+||||++++||++||+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 386 g~i~~~~v~~~y-~~--~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~ 459 (1284)
T 3g5u_A 386 GNLEFKNIHFSY-PS--RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINV 459 (1284)
T ss_dssp CCEEEEEEEECC-SS--TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEEc-CC--CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCH
Confidence 358999999983 21 12357999999999999999999999999999999999999874 9999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.+|||+|++.+++. ||+||+.++.. ..+.++..+. +.+.++.+ |++...+..+.+|||||||
T Consensus 460 ~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Q 533 (1284)
T 3g5u_A 460 RYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQ 533 (1284)
T ss_dssp HHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHH
T ss_pred HHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHH
Confidence 13469999999999987 99999998742 1222222221 12333433 3333445566799999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||+.+|+|||||||||+||+.+...+.+.|+.+. + | +|+|+++|++ +.+ ..||+|++|++|++++.|+
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~--~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g~ 607 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-E-G--RTTIVIAHRL-STV-RNADVIAGFDGGVIVEQGN 607 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-T-T--SEEEEECSCH-HHH-TTCSEEEECSSSCCCCEEC
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-C-C--CEEEEEecCH-HHH-HcCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999875 3 4 4999999996 455 5599999999999999999
Q ss_pred hhhHHH
Q 044030 264 ATAANE 269 (449)
Q Consensus 264 ~~~~~~ 269 (449)
++++.+
T Consensus 608 ~~~l~~ 613 (1284)
T 3g5u_A 608 HDELMR 613 (1284)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988753
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.5e-39 Score=343.90 Aligned_cols=207 Identities=20% Similarity=0.288 Sum_probs=176.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++++|+++.| ++ ..|+++|+++++||++||+||||||||||+|+|+|+++|. +|+|.+++.
T Consensus 267 ~~~l~~~~l~~~~------~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKL------GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ------ 330 (538)
T ss_dssp CEEEEECCEEEEE------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC------
T ss_pred cceEEEcceEEEE------CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe------
Confidence 4578999999872 22 4688889999999999999999999999999999999874 899997653
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
.++|++|+......+||.|++.+..... ... ....++++++.+++.+..++++.+|||||||||+||+||+.+
T Consensus 331 -~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 331 -ILSYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp -CEEEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred -eeEeechhcccccCCCHHHHHHHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 5899999987777889999998742211 111 123577889999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC--CeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA--GQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~--G~iv~~g~~~~~ 267 (449)
|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++..+||+|++|++ |.....+++..+
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~--tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA--VTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTC--EEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 9999999999999999999999999999866655 999999996 588999999999986 566666766544
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.2e-39 Score=374.98 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=172.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.++++||++.| . + ..+.++|+|+||+|++||++||+||||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 1029 g~i~~~~v~~~y-~-~-~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~ 1102 (1284)
T 3g5u_A 1029 GNVQFSGVVFNY-P-T-RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNV 1102 (1284)
T ss_dssp CCEEEEEEEBCC-S-C-GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCH
T ss_pred CcEEEEEEEEEC-C-C-CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCH
Confidence 358999999983 2 1 12346999999999999999999999999999999999999874 9999999987642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-------hCc----cCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-------MNT----RIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~----~~~~LSg 179 (449)
.++.++||||++.+++ .||+||+.++.... ..+.+ .+.+.++..++.+. .|+ ...+|||
T Consensus 1103 ~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSg 1174 (1284)
T 3g5u_A 1103 QWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174 (1284)
T ss_dssp HHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCH
T ss_pred HHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCHH----HHHHHHHHhCcHHHHHhCccccccccCCCCCccCH
Confidence 1357999999998876 59999997753211 12222 23344444444333 233 3468999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+|||||+.+|+||+|||||+|||+.+...+.+.|+++. + | +|||++||++. .+ ..||+|++|++|+++
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~-~--~tvi~isH~l~-~i-~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-E-G--RTCIVIAHRLS-TI-QNADLIVVIQNGKVK 1248 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-S-S--SCEEEECSCTT-GG-GSCSEEEEEETBEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-C-C--CEEEEEecCHH-HH-HcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999998864 3 4 49999999985 55 569999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
+.|+++++.+
T Consensus 1249 ~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1249 EHGTHQQLLA 1258 (1284)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999988753
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=335.16 Aligned_cols=203 Identities=19% Similarity=0.240 Sum_probs=169.4
Q ss_pred EeeEEEEeecCcccccceeeeeeEEEecC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPG-----HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 41 ~nls~~~~~~~~~~~~~iL~~vs~~i~~G-----e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
+++++.| . +...+++|+||++.+| |+++|+||||||||||+++|+|+++|+ +|+. . ...
T Consensus 350 ~~~~~~y-~----~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~~ 413 (608)
T 3j16_B 350 ASRAFSY-P----SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PKL 413 (608)
T ss_dssp SSSCCEE-C----CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CSC
T ss_pred cceeEEe-c----CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cCC
Confidence 4555552 1 2345899999999999 789999999999999999999999874 7752 1 124
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
.++|++|+.......||+|++.... +. ... ....++++++.++|.+.+++++.+|||||||||+||+||+.+|
T Consensus 414 ~i~~~~q~~~~~~~~tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p 486 (608)
T 3j16_B 414 NVSMKPQKIAPKFPGTVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPA 486 (608)
T ss_dssp CEEEECSSCCCCCCSBHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCC
T ss_pred cEEEecccccccCCccHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 6899999977766779999875432 11 111 1245678899999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC--CeEEEecChhhHHH
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA--GQTVYFGPATAANE 269 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~--G~iv~~g~~~~~~~ 269 (449)
++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++..+||++++|++ |+++..|+|+++..
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~--tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK--TAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTC--EEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999999999999999755555 999999996 688999999999996 89999999987754
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3e-36 Score=335.60 Aligned_cols=201 Identities=24% Similarity=0.342 Sum_probs=167.9
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
....|...|+++.| +++.+|+|+||++++|++++|+||||||||||||+|+| |+| +|.+...
T Consensus 432 ~~~~L~~~~ls~~y------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~- 493 (986)
T 2iw3_A 432 EGEDLCNCEFSLAY------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE- 493 (986)
T ss_dssp SSCEEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-
T ss_pred ccceeEEeeEEEEE------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-
Confidence 34567777899883 45689999999999999999999999999999999995 222 3433211
Q ss_pred cCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHH
Q 044030 114 YGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 114 ~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
...++|++|+. .+++.+||.|++.+ ... +. ++++.++++.+|+. +..++++.+|||||||||+||+||
T Consensus 494 ~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 494 ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV 563 (986)
T ss_dssp TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHH
T ss_pred ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence 12478999985 67889999999975 111 11 45688999999994 788999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE-EecChhhHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV-YFGPATAANE 269 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv-~~g~~~~~~~ 269 (449)
+.+|++|||||||+|||+.++..+.+.|++ .|. |||++|||+ .++..+||++++|++|+++ +.|+++++..
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~--tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGI--TSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCS--EEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCC--EEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999987 244 999999995 6788999999999999997 6899887653
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.3e-37 Score=335.59 Aligned_cols=221 Identities=22% Similarity=0.291 Sum_probs=143.5
Q ss_pred EEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCC
Q 044030 39 TWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLL---------------------DALAGRLGSDT 97 (449)
Q Consensus 39 ~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL---------------------~~l~G~~~~~~ 97 (449)
.-+++++.++. ...+.+|+||||+|++||++||+||||||||||+ ++++|+..|+.
T Consensus 17 ~~~~~~~~~~~---~~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~ 93 (670)
T 3ux8_A 17 RGSHMDKIIVK---GARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDV 93 (670)
T ss_dssp -----CEEEEE---EECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCC
T ss_pred CCCCcceEEEc---CCCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCc
Confidence 44555544222 1245799999999999999999999999999998 88888876641
Q ss_pred C----ceeEEEECCEeccc-ccCcEEEEcCCCC-------------------CCCCCCHHHHHHHHHhccCCCCCCHHHH
Q 044030 98 R----QTGKILINGHKKAL-AYGTSAYVTQDDT-------------------LITTLTVKEAVYYSAQLQLPDTMPKSDK 153 (449)
Q Consensus 98 ~----~~G~I~~~g~~~~~-~~~~i~yv~Q~~~-------------------l~~~lTv~e~l~~~~~~~~~~~~~~~~~ 153 (449)
. ..|.|.++|.+... ..+.++||+|... .++.+||.||+.+......... .....
T Consensus 94 ~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~ 172 (670)
T 3ux8_A 94 DAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIA 172 (670)
T ss_dssp SEEESCCCEEEESSCC-----CCBHHHHTTCC-------------------------CC---------------------
T ss_pred cceeccccceEecCchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHH
Confidence 1 14567777754321 1234555555433 2467899999987533221100 00000
Q ss_pred H------HHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 044030 154 K------ERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRPK--LLFLDEPTSGLDSAASYYVMSRIAKLGQ 224 (449)
Q Consensus 154 ~------~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P~--llllDEPtsgLD~~~~~~i~~~l~~l~~ 224 (449)
+ .....+++.+||.+. +++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|+++++
T Consensus 173 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~ 252 (670)
T 3ux8_A 173 RLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD 252 (670)
T ss_dssp ------CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 0 111245888999865 799999999999999999999999998 9999999999999999999999999985
Q ss_pred hcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 225 ~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
.|. |||++|||+ .. ...||++++| ++|++++.|+++++.
T Consensus 253 -~g~--tvi~vtHd~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 253 -LGN--TLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp -TTC--EEEEECCCH-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred -cCC--EEEEEeCCH-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 455 999999996 34 4569999999 899999999998764
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.6e-37 Score=332.51 Aligned_cols=191 Identities=25% Similarity=0.353 Sum_probs=157.6
Q ss_pred EeeEEEEeecCccccc-ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEec
Q 044030 41 KDLTVTIVSNGKKGSS-SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI---------LINGHKK 110 (449)
Q Consensus 41 ~nls~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I---------~~~g~~~ 110 (449)
+||++.| +++ .+|+|+| ++++||+++|+||||||||||||+|+|+++|+ +|++ .++|.+.
T Consensus 95 ~~ls~~y------g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~ 164 (607)
T 3bk7_A 95 EDCVHRY------GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNEL 164 (607)
T ss_dssp GSEEEEC------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTH
T ss_pred CCeEEEE------CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEeh
Confidence 7888872 333 4999999 99999999999999999999999999999874 7875 4566542
Q ss_pred cc-------ccCcEEEEcCCCCCCC---CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH
Q 044030 111 AL-------AYGTSAYVTQDDTLIT---TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180 (449)
Q Consensus 111 ~~-------~~~~i~yv~Q~~~l~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 180 (449)
.. ....+++++|....++ ..||.|++... .. .++++++++.+||.+.+++++.+||||
T Consensus 165 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------~~-----~~~~~~~L~~lgL~~~~~~~~~~LSGG 232 (607)
T 3bk7_A 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------DE-----VGKFEEVVKELELENVLDRELHQLSGG 232 (607)
T ss_dssp HHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-------CC-----SSCHHHHHHHTTCTTGGGSBGGGCCHH
T ss_pred hhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-------HH-----HHHHHHHHHHcCCCchhCCChhhCCHH
Confidence 11 1235789998754322 23999998531 00 134778999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ ..+..+||+|++|+++.
T Consensus 233 ekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~--tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 233 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GK--AVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CC--EEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 999999999999999999999999999999999999999999854 55 999999996 57888999999998653
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.6e-37 Score=328.72 Aligned_cols=194 Identities=24% Similarity=0.336 Sum_probs=157.9
Q ss_pred EEE-EeeEEEEeecCccccc-ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EEC
Q 044030 38 LTW-KDLTVTIVSNGKKGSS-SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI---------LIN 106 (449)
Q Consensus 38 l~~-~nls~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I---------~~~ 106 (449)
.++ +||++.| +++ .+|+||| +|++||++||+||||||||||||+|+|+++|+ +|++ .++
T Consensus 21 ~~~~~~ls~~y------g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~ 90 (538)
T 1yqt_A 21 EQLEEDCVHRY------GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFR 90 (538)
T ss_dssp ---CCCEEEEC------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTT
T ss_pred hhHhcCcEEEE------CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhC
Confidence 355 5898882 333 5899999 99999999999999999999999999999874 6775 356
Q ss_pred CEeccc-------ccCcEEEEcCCCCCCCC---CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCC
Q 044030 107 GHKKAL-------AYGTSAYVTQDDTLITT---LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR 176 (449)
Q Consensus 107 g~~~~~-------~~~~i~yv~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~ 176 (449)
|.+... ....+++++|....++. .|+.|++.... ..++++++++.+||.+..++++.+
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~~~ 158 (538)
T 1yqt_A 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREIQH 158 (538)
T ss_dssp TSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBGGG
T ss_pred CccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCChhh
Confidence 654210 12357899997544332 38998875311 013477899999999999999999
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 177 LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
|||||||||+||+||+.+|++|||||||++||+.++..+++.|+++++ .|. |||++|||+ .++..+||+|++|++|
T Consensus 159 LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~--tvi~vsHd~-~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGK--SVLVVEHDL-AVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC--EEEEECSCH-HHHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCH-HHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999999999999985 455 999999995 5888999999999865
Q ss_pred e
Q 044030 257 Q 257 (449)
Q Consensus 257 ~ 257 (449)
.
T Consensus 235 ~ 235 (538)
T 1yqt_A 235 P 235 (538)
T ss_dssp T
T ss_pred c
Confidence 3
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.7e-36 Score=335.93 Aligned_cols=209 Identities=23% Similarity=0.342 Sum_probs=165.0
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...|+++|+++. +. .+.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|. +|+|+++|.
T Consensus 669 ~~mL~v~nLs~~-Y~---g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------ 735 (986)
T 2iw3_A 669 KAIVKVTNMEFQ-YP---GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------ 735 (986)
T ss_dssp SEEEEEEEEEEC-CT---TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------
T ss_pred CceEEEEeeEEE-eC---CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------
Confidence 356999999997 21 11367999999999999999999999999999999999999874 899999863
Q ss_pred CcEEEEcCCCCC----CCCCCHHHHHHHHHhcc------------CC---------------------------------
Q 044030 115 GTSAYVTQDDTL----ITTLTVKEAVYYSAQLQ------------LP--------------------------------- 145 (449)
Q Consensus 115 ~~i~yv~Q~~~l----~~~lTv~e~l~~~~~~~------------~~--------------------------------- 145 (449)
..++|++|+... ....|+.+++.+..... ..
T Consensus 736 ~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~ 815 (986)
T 2iw3_A 736 CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTY 815 (986)
T ss_dssp CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEE
T ss_pred cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccc
Confidence 248999997521 23458888876532100 00
Q ss_pred -------------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCch-h-h
Q 044030 146 -------------------DTM--------P--------------------------KSDKKERAEVTIREMGLQD-A-M 170 (449)
Q Consensus 146 -------------------~~~--------~--------------------------~~~~~~~v~~~l~~lgL~~-~-~ 170 (449)
... + ....+++++++++.+||.. . .
T Consensus 816 ~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~ 895 (986)
T 2iw3_A 816 EYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVS 895 (986)
T ss_dssp EEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHH
T ss_pred hhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhc
Confidence 000 0 0001346788999999975 4 6
Q ss_pred CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
++++++|||||||||+||+||+.+|++|||||||+|||+.+...+++.|+++ +. |||++|||+ +.+..+||++
T Consensus 896 ~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~--tVIiISHD~-e~v~~l~DrV 968 (986)
T 2iw3_A 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EG--GVIIITHSA-EFTKNLTEEV 968 (986)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SS--EEEEECSCH-HHHTTTCCEE
T ss_pred CCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CC--EEEEEECCH-HHHHHhCCEE
Confidence 8899999999999999999999999999999999999999999999888654 33 999999995 5788899999
Q ss_pred EEeeCCeEEEecC
Q 044030 251 CLLSAGQTVYFGP 263 (449)
Q Consensus 251 ~~l~~G~iv~~g~ 263 (449)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.9e-35 Score=321.19 Aligned_cols=195 Identities=25% Similarity=0.346 Sum_probs=149.9
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEecccc
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA----------------------GRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~----------------------G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
..+|+||||+|++||++||+||||||||||+++|+ |+.. ..|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~----~~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH----LDKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG----CSEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc----cCceeEeccccCCCC
Confidence 46899999999999999999999999999998764 2222 246777777643210
Q ss_pred ----------------------------------------------cCcEEEEcCCCCCCC-------------------
Q 044030 114 ----------------------------------------------YGTSAYVTQDDTLIT------------------- 128 (449)
Q Consensus 114 ----------------------------------------------~~~i~yv~Q~~~l~~------------------- 128 (449)
....|+++|+..+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 011234444433322
Q ss_pred -------------CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 129 -------------TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 129 -------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
.+||.||+.|.... ...+++.+.++.+|+.. .+++++.+|||||||||+|||||+.+
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~ 561 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRR 561 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSC
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhC
Confidence 47999999875321 12244567888999964 56899999999999999999999998
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChh
Q 044030 195 P---KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPAT 265 (449)
Q Consensus 195 P---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~ 265 (449)
| ++|||||||+|||+.++..+++.|++++++ |. |||++|||+ .. ...||+|++| ++|++++.|+++
T Consensus 562 p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~--tvi~vtHd~-~~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 562 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GD--TVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp CCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HH-HHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 7 499999999999999999999999999854 55 999999996 34 4679999999 899999999998
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-34 Score=305.79 Aligned_cols=187 Identities=25% Similarity=0.348 Sum_probs=145.6
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeccc-----ccC--cE
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI-----------LINGHKKAL-----AYG--TS 117 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I-----------~~~g~~~~~-----~~~--~i 117 (449)
...|++++ .+++||++||+||||||||||||+|+|+++|+ +|+| .+.|..... ... ..
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 166 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKA 166 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCC
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhhh
Confidence 34677777 68999999999999999999999999999875 7887 233332110 001 12
Q ss_pred EEEcCCCCCC------CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 118 AYVTQDDTLI------TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 118 ~yv~Q~~~l~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.+.+|..... +..++.+++.... ....++++++++.+||.+..++++.+|||||||||+||+||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~----------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL 236 (608)
T 3j16_B 167 IIKPQYVDNIPRAIKGPVQKVGELLKLRM----------EKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSC 236 (608)
T ss_dssp EEECCCTTTHHHHCSSSSSHHHHHHHHHC----------CSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHH
T ss_pred hhchhhhhhhhhhhcchhhHHHHHHhhhh----------hhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHH
Confidence 3344432211 2235555553321 01235688999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++||++ .++..+||++++|++|..++
T Consensus 237 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~-g~--tvi~vtHdl-~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 237 VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TK--YVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT-TC--EEEEECSCH-HHHHHHCSEEEEEESCTTTE
T ss_pred HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEeCCcccc
Confidence 9999999999999999999999999999999854 54 999999996 68999999999999876554
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.1e-34 Score=301.51 Aligned_cols=181 Identities=20% Similarity=0.219 Sum_probs=143.3
Q ss_pred eeeeeEE-EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeccc-------ccCcEEE
Q 044030 59 LEDLTGY-AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI-----------LINGHKKAL-------AYGTSAY 119 (449)
Q Consensus 59 L~~vs~~-i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I-----------~~~g~~~~~-------~~~~i~y 119 (449)
++-..+. .++||++||+||||||||||+|+|+|+++|+ +|+| .++|.+... ....+..
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~ 90 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVH 90 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEE
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhh
Confidence 4444453 4599999999999999999999999999875 7988 566754311 1123444
Q ss_pred EcCCCCCC---CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 120 VTQDDTLI---TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 120 v~Q~~~l~---~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
..|..... ...|+.+++.... .+++++++++.+|+.+..++++.+|||||||||+||+||+.+|+
T Consensus 91 ~~~~~~~~~~~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~ 158 (538)
T 3ozx_A 91 KIQYVEYASKFLKGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREAD 158 (538)
T ss_dssp ECSCTTGGGTTCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred ccchhhhhhhhccCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 55543222 2237887653210 11246788999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
+|||||||++||+.++..+.+.|++++ + |. |||++||++ .++..+||+|++|++|...
T Consensus 159 illlDEPts~LD~~~~~~l~~~l~~l~-~-g~--tii~vsHdl-~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 159 VYIFDQPSSYLDVRERMNMAKAIRELL-K-NK--YVIVVDHDL-IVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHC-T-TS--EEEEECSCH-HHHHHHCSEEEEEEEETTT
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHh-C-CC--EEEEEEeCh-HHHHhhCCEEEEecCCccc
Confidence 999999999999999999999999996 4 55 999999996 6899999999999876543
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.98 E-value=1e-32 Score=305.30 Aligned_cols=208 Identities=24% Similarity=0.328 Sum_probs=159.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH-cCC---------CCCC--Ccee--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA-GRL---------GSDT--RQTG-- 101 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~-G~~---------~~~~--~~~G-- 101 (449)
..|+++|++. ..|+|||++|++||++||+|+||||||||+++|+ |.+ .++. ...|
T Consensus 628 ~~L~v~~l~~-----------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~ 696 (972)
T 2r6f_A 628 RWLEVVGARE-----------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE 696 (972)
T ss_dssp CEEEEEEECS-----------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGG
T ss_pred eEEEEecCcc-----------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccc
Confidence 4577777642 2699999999999999999999999999999864 211 1211 0123
Q ss_pred ----EEEECCEecccc------------------------cCcEEEEcCCCCCC----------------------C---
Q 044030 102 ----KILINGHKKALA------------------------YGTSAYVTQDDTLI----------------------T--- 128 (449)
Q Consensus 102 ----~I~~~g~~~~~~------------------------~~~i~yv~Q~~~l~----------------------~--- 128 (449)
.|.++|.++... .+..||++|...+. +
T Consensus 697 ~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~ 776 (972)
T 2r6f_A 697 HLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVY 776 (972)
T ss_dssp GCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEE
T ss_pred ccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccc
Confidence 478887664210 02246777653321 1
Q ss_pred -----------------------------CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCC
Q 044030 129 -----------------------------TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLS 178 (449)
Q Consensus 129 -----------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LS 178 (449)
.+||.|++.|... . .. ..++.++++.+||.. ..++++.+||
T Consensus 777 ~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~~~LS 847 (972)
T 2r6f_A 777 VPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPATTLS 847 (972)
T ss_dssp EECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCGGGCC
T ss_pred ccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCchhhCC
Confidence 4678888876421 1 11 234568899999987 7899999999
Q ss_pred hHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe--
Q 044030 179 GGQKRRVSISIEILTRP---KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL-- 253 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l-- 253 (449)
|||||||+||++|+.+| ++|||||||+|||+.++..+++.|+++++ .|. |||++||++ +.+ ..||+|++|
T Consensus 848 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~--TVIvisHdl-~~i-~~aDrIivL~p 922 (972)
T 2r6f_A 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD--TVLVIEHNL-DVI-KTADYIIDLGP 922 (972)
T ss_dssp HHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC--EEEEECCCH-HHH-TTCSEEEEECS
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEcCCH-HHH-HhCCEEEEEcC
Confidence 99999999999999875 99999999999999999999999999985 454 999999996 444 689999999
Q ss_pred ----eCCeEEEecChhhHH
Q 044030 254 ----SAGQTVYFGPATAAN 268 (449)
Q Consensus 254 ----~~G~iv~~g~~~~~~ 268 (449)
++|++++.|+++++.
T Consensus 923 ~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 923 EGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp SSTTSCCSEEEEESHHHHH
T ss_pred CCCCCCCEEEEecCHHHHH
Confidence 789999999998764
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.98 E-value=3e-32 Score=300.80 Aligned_cols=208 Identities=27% Similarity=0.344 Sum_probs=157.9
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHH-HHcCCC-------C--C--------
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDA-LAGRLG-------S--D-------- 96 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~-l~G~~~-------~--~-------- 96 (449)
...|+++|+++. +|+|||++|++||++||+|+||||||||+++ |+|.+. + +
T Consensus 500 ~~~L~v~~l~~~-----------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~ 568 (842)
T 2vf7_A 500 AGWLELNGVTRN-----------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPAD 568 (842)
T ss_dssp SCEEEEEEEEET-----------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------------
T ss_pred CceEEEEeeeec-----------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccc
Confidence 346888888642 6999999999999999999999999999997 776531 1 0
Q ss_pred -----CCcee-------EEEECCEeccccc----------------------------------------------CcEE
Q 044030 97 -----TRQTG-------KILINGHKKALAY----------------------------------------------GTSA 118 (449)
Q Consensus 97 -----~~~~G-------~I~~~g~~~~~~~----------------------------------------------~~i~ 118 (449)
...+| .|.++|.++.... +..|
T Consensus 569 ~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G 648 (842)
T 2vf7_A 569 HTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEG 648 (842)
T ss_dssp ---CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCS
T ss_pred cccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCC
Confidence 11367 7888887542100 0111
Q ss_pred EEcCCCCCCC--------------------------------CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC
Q 044030 119 YVTQDDTLIT--------------------------------TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166 (449)
Q Consensus 119 yv~Q~~~l~~--------------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 166 (449)
++..+..+++ .+|+.|++.|... ....+++.++++.+||
T Consensus 649 ~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---------~~~~~~~~~~L~~~gL 719 (842)
T 2vf7_A 649 WVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD---------ESAIFRALDTLREVGL 719 (842)
T ss_dssp EEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---------SHHHHHHHHHHHHTTC
T ss_pred ccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---------chHHHHHHHHHHHcCC
Confidence 2211111222 2355555544211 1123467899999999
Q ss_pred ch-hhCccCCCCChHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 167 QD-AMNTRIRRLSGGQKRRVSISIEILTR---PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 167 ~~-~~~~~~~~LSgGerqRv~ia~aL~~~---P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
.. ..++++..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|++++++ |. |||++||++ ++
T Consensus 720 ~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~--tVIvisHdl-~~ 795 (842)
T 2vf7_A 720 GYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GN--TVIAVEHKM-QV 795 (842)
T ss_dssp TTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECCCH-HH
T ss_pred CcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CC--EEEEEcCCH-HH
Confidence 87 46999999999999999999999996 7999999999999999999999999999854 54 999999996 45
Q ss_pred HHhhcCeEEEe------eCCeEEEecChhhH
Q 044030 243 VFQLFHNLCLL------SAGQTVYFGPATAA 267 (449)
Q Consensus 243 i~~~~D~v~~l------~~G~iv~~g~~~~~ 267 (449)
+ ..||+|++| ++|++++.|+++++
T Consensus 796 i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 796 V-AASDWVLDIGPGAGEDGGRLVAQGTPAEV 825 (842)
T ss_dssp H-TTCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred H-HhCCEEEEECCCCCCCCCEEEEEcCHHHH
Confidence 6 889999999 79999999999876
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.98 E-value=2e-31 Score=296.44 Aligned_cols=199 Identities=24% Similarity=0.321 Sum_probs=153.4
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEeccc-----
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLL---------DALAGRLGSDT---RQT------GKILINGHKKAL----- 112 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL---------~~l~G~~~~~~---~~~------G~I~~~g~~~~~----- 112 (449)
...|+|||++|++|++++|+||||||||||+ +.+.|...+.. ..+ +.+.+++.+...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3479999999999999999999999999997 44444332210 012 234444432110
Q ss_pred -----------------------------------------ccCcEEEEcCCCCCCC-----------------------
Q 044030 113 -----------------------------------------AYGTSAYVTQDDTLIT----------------------- 128 (449)
Q Consensus 113 -----------------------------------------~~~~i~yv~Q~~~l~~----------------------- 128 (449)
..+..||+.++..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0123477777776655
Q ss_pred ---------CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhCC---
Q 044030 129 ---------TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTRP--- 195 (449)
Q Consensus 129 ---------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~P--- 195 (449)
.+||.|++.|.... ....++.++|+.+||.. ..++++.+|||||||||+||+||+.+|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 36788888775321 12345778999999975 468899999999999999999999875
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
+||||||||+|||+.+...+++.|++++++ |. |||+++|++ +. ...||+|++| ++|++++.|+++++.
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~--TVIvI~HdL-~~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GN--TVIVIEHNL-DV-IKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CC--EEEEEeCCH-HH-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 799999999999999999999999999854 55 999999996 44 4669999999 899999999998875
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=6.1e-32 Score=300.02 Aligned_cols=208 Identities=24% Similarity=0.295 Sum_probs=156.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH-c----CCCCCCCcee---------
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA-G----RLGSDTRQTG--------- 101 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~-G----~~~~~~~~~G--------- 101 (449)
..|+++|++. .+|+||||+|++|+++||+|+||||||||+++|+ | .+.+.....|
T Consensus 646 ~~L~v~~l~~-----------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~ 714 (993)
T 2ygr_A 646 RQLTVVGARE-----------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLD 714 (993)
T ss_dssp SEEEEEEECS-----------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCT
T ss_pred ceEEEecCcc-----------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCcc
Confidence 4577777642 2699999999999999999999999999999853 2 2211101123
Q ss_pred ----EEEECCEecccc------------------------cCcEEEEcCCCCCC----------------------C---
Q 044030 102 ----KILINGHKKALA------------------------YGTSAYVTQDDTLI----------------------T--- 128 (449)
Q Consensus 102 ----~I~~~g~~~~~~------------------------~~~i~yv~Q~~~l~----------------------~--- 128 (449)
.|.+++.++... .+..||++|...+. +
T Consensus 715 ~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~ 794 (993)
T 2ygr_A 715 YLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVY 794 (993)
T ss_dssp TCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEE
T ss_pred ccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccce
Confidence 245555443100 02246666643221 1
Q ss_pred -----------------------------CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCC
Q 044030 129 -----------------------------TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLS 178 (449)
Q Consensus 129 -----------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LS 178 (449)
.+||.|++.|.... .. ..++.++++.+||.. ..++++..||
T Consensus 795 ~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~lgL~~~~l~~~~~~LS 865 (993)
T 2ygr_A 795 VPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI-------AG--VHRYLRTLVDVGLGYVRLGQPAPTLS 865 (993)
T ss_dssp EECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC-------HH--HHHHHHHHHHTTGGGSBTTCCGGGSC
T ss_pred eeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc-------hH--HHHHHHHHHHcCCCcccccCccccCC
Confidence 35777777764321 11 234578899999987 7899999999
Q ss_pred hHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe--
Q 044030 179 GGQKRRVSISIEILTRP---KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL-- 253 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l-- 253 (449)
|||||||+||++|+.+| ++|||||||+|||+.++..+++.|+++++ .|. |||++||++ ..+ ..||+|++|
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~--TVIvisHdl-~~i-~~aDrIivL~p 940 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGN--TVIVIEHNL-DVI-KTSDWIIDLGP 940 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC--EEEEECCCH-HHH-TTCSEEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEcCCH-HHH-HhCCEEEEECC
Confidence 99999999999999875 99999999999999999999999999985 454 999999996 444 789999999
Q ss_pred ----eCCeEEEecChhhHH
Q 044030 254 ----SAGQTVYFGPATAAN 268 (449)
Q Consensus 254 ----~~G~iv~~g~~~~~~ 268 (449)
++|++++.|+++++.
T Consensus 941 ~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 941 EGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp SSTTSCSEEEEEECHHHHH
T ss_pred CcCCCCCEEEEecCHHHHH
Confidence 689999999998764
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=6.7e-30 Score=262.83 Aligned_cols=199 Identities=20% Similarity=0.264 Sum_probs=144.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------CCce
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-----------------------------------TRQT 100 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-----------------------------------~~~~ 100 (449)
..+++++|+++.+| +++|+|||||||||||++|+++..+. ...+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35899999999999 99999999999999999998876420 1236
Q ss_pred eEEEECCEeccc------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC-----------------------CCCCC--
Q 044030 101 GKILINGHKKAL------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL-----------------------PDTMP-- 149 (449)
Q Consensus 101 G~I~~~g~~~~~------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-----------------------~~~~~-- 149 (449)
|++++||.+... ....+++++|++.++.. +..+...|.-.... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999987542 12348999999876543 55444443221100 00000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCchh-----------------------hC---
Q 044030 150 --------------------------------KSDKKERAEVTIREMGLQDA-----------------------MN--- 171 (449)
Q Consensus 150 --------------------------------~~~~~~~v~~~l~~lgL~~~-----------------------~~--- 171 (449)
.......+.+.++.+++... ..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 00011234455666665431 00
Q ss_pred ----ccCCC-CChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 172 ----TRIRR-LSGGQKRRVSISIEILTRP--KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 172 ----~~~~~-LSgGerqRv~ia~aL~~~P--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
++++. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ + |. |||++||++ ++.
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~--~vi~itH~~--~~~ 359 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TR--QVLVVTHLA--QIA 359 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TS--EEEEECSCH--HHH
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CC--EEEEEeCcH--HHH
Confidence 22223 6999999999999999999 9999999999999999999999999997 4 44 999999996 456
Q ss_pred hhcCeEEEe----eCCeEEEec
Q 044030 245 QLFHNLCLL----SAGQTVYFG 262 (449)
Q Consensus 245 ~~~D~v~~l----~~G~iv~~g 262 (449)
..||++++| ++|+++...
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEEEE
T ss_pred hhcCeEEEEEEeccCCceEEEE
Confidence 889999999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-33 Score=293.32 Aligned_cols=185 Identities=14% Similarity=0.097 Sum_probs=148.6
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEecccccCcEEEEcCCCC---CCCCCCHHH
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG-K-ILINGHKKALAYGTSAYVTQDDT---LITTLTVKE 134 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G-~-I~~~g~~~~~~~~~i~yv~Q~~~---l~~~lTv~e 134 (449)
.++|+++++|++++|+||||||||||+|+|+|+..| .+| + |+++|.. .+.++|+||+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg~~----~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINLDP----QQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEECCT----TSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcCCc----cCCeeeeccchhhcccccccchhh
Confidence 378899999999999999999999999999999876 489 8 9999832 356899999984 455679999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH--HHhCCCE----EEEeC-CCCCC
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE--ILTRPKL----LFLDE-PTSGL 207 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a--L~~~P~l----lllDE-PtsgL 207 (449)
|+ |+...... .. ..+++.++++.+|+.+..+ +.+|||||||||+||+| |+.+|++ ||||| ||++|
T Consensus 202 ni-~~~~~~~~--~~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~L 273 (460)
T 2npi_A 202 PT-WGQSLTSG--AT---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQL 273 (460)
T ss_dssp TT-CSCBCBSS--CC---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGS
T ss_pred hh-cccccccC--cc---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCccccc
Confidence 98 65432111 00 1123556778889988776 88999999999999999 9999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc--H---HHHhhcCe-----EEEee-CCeEEEecChhhH
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS--S---EVFQLFHN-----LCLLS-AGQTVYFGPATAA 267 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~--~---~i~~~~D~-----v~~l~-~G~iv~~g~~~~~ 267 (449)
|+. ...+.++++ +.+. |+|+++|+.. - ++..+||+ |++|+ +|+++ .|+++++
T Consensus 274 D~~-~~~l~~l~~----~~~~--tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 274 DEN-LAELHHIIE----KLNV--NIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CSS-CHHHHHHHH----HTTC--CEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred Chh-HHHHHHHHH----HhCC--CEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 999 444444443 3444 9999999964 1 56689999 99999 99999 9988765
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.95 E-value=4.9e-27 Score=238.50 Aligned_cols=85 Identities=26% Similarity=0.348 Sum_probs=77.0
Q ss_pred CccCCCCChHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 171 NTRIRRLSGGQKRRVSISIEIL------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
++++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ . ..
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~--tvi~itH~~-~-~~ 348 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNK--VIVFITHDR-E-FS 348 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSS--EEEEEESCH-H-HH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCC--EEEEEecch-H-HH
Confidence 5678899999999999999999 79999999999999999999999999999974 455 999999996 3 47
Q ss_pred hhcCeEEEeeCCeEEE
Q 044030 245 QLFHNLCLLSAGQTVY 260 (449)
Q Consensus 245 ~~~D~v~~l~~G~iv~ 260 (449)
..||++++|++|+++.
T Consensus 349 ~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 349 EAFDRKLRITGGVVVN 364 (365)
T ss_dssp TTCSCEEEEETTEEC-
T ss_pred HhCCEEEEEECCEEEe
Confidence 8899999999999874
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=2.9e-26 Score=228.85 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=76.7
Q ss_pred hhhCccCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHH
Q 044030 168 DAMNTRIRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV 243 (449)
Q Consensus 168 ~~~~~~~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i 243 (449)
+..+.++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|++++ + |. |||++||++ ++
T Consensus 211 ~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~--~vi~~tH~~--~~ 284 (322)
T 1e69_A 211 GRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HT--QFIVITHNK--IV 284 (322)
T ss_dssp TSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TS--EEEEECCCT--TG
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CC--eEEEEECCH--HH
Confidence 3467778999999999999999997 5789999999999999999999999999985 3 44 999999995 46
Q ss_pred HhhcCeE--EEeeCCeE-EEecChhh
Q 044030 244 FQLFHNL--CLLSAGQT-VYFGPATA 266 (449)
Q Consensus 244 ~~~~D~v--~~l~~G~i-v~~g~~~~ 266 (449)
...||++ ++|.+|.. +.....++
T Consensus 285 ~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 285 MEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp GGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HhhCceEEEEEEeCCEEEEEEEEcch
Confidence 7899986 77887754 44444444
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=3.5e-30 Score=241.90 Aligned_cols=142 Identities=16% Similarity=0.158 Sum_probs=100.6
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE--ecccccCcEEEEcCCCCCCCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH--KKALAYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~--~~~~~~~~i~yv~Q~~~l~~~lT 131 (449)
+.+.+|+|+ ++||+++|+||||||||||+++|+|+ +| .+|+|..... +.....+.++|+||++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p---~~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL---QSKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH---HTTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC---cCCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 567899996 89999999999999999999999999 76 3788842111 1111235699999976
Q ss_pred HHHHH-HHHH----hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 044030 132 VKEAV-YYSA----QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSG 206 (449)
Q Consensus 132 v~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsg 206 (449)
+||+ .+.. .+.. ... .++++++++. |+ ||||||+||+||+.+|++|||||||+|
T Consensus 76 -~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp -----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred -HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3444 2211 1110 001 1245556654 43 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 207 LDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 207 LD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
++..+++.|+++ ++ |. ||| +|||+.
T Consensus 135 ----~~~~l~~~l~~l-~~-g~--tii-vtHd~~ 159 (208)
T 3b85_A 135 ----TPAQMKMFLTRL-GF-GS--KMV-VTGDIT 159 (208)
T ss_dssp ----CHHHHHHHHTTB-CT-TC--EEE-EEEC--
T ss_pred ----cHHHHHHHHHHh-cC-CC--EEE-EECCHH
Confidence 888999999988 33 44 999 999963
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.93 E-value=6.9e-29 Score=254.98 Aligned_cols=179 Identities=15% Similarity=0.118 Sum_probs=142.6
Q ss_pred cceeeeeeEEEecCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 56 SSILEDLTGYAKPGH--------------------LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge--------------------~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
+.+|++||+++++|+ ++||+||||||||||+|+|+|+.+|+ +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e
Confidence 468999999999999 99999999999999999999999774 899999987543 1
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH--HHHHHHHHHHHHh
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG--QKRRVSISIEILT 193 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG--erqRv~ia~aL~~ 193 (449)
.+|++|++ .++.+|+.|++.++.. +..++++++.+++.+.. ..+. |||| |+||+.||++|+.
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHh
Confidence 27899985 5778899888754321 12467889999987653 3334 9999 9999999999999
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----hcC--CCeEEEEEecCCcH-HHHhhcCeEE-EeeC
Q 044030 194 ----------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ----RDG--IGRTIIASIHQPSS-EVFQLFHNLC-LLSA 255 (449)
Q Consensus 194 ----------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~----~~g--~g~tii~~tH~~~~-~i~~~~D~v~-~l~~ 255 (449)
+|++++|||||+|||+..+..+++.|+++.+ +.| ...+|++++|+... .+.+++|++. .|.+
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999852 222 12378999998642 2888888885 4544
Q ss_pred C
Q 044030 256 G 256 (449)
Q Consensus 256 G 256 (449)
|
T Consensus 254 g 254 (413)
T 1tq4_A 254 Y 254 (413)
T ss_dssp G
T ss_pred c
Confidence 4
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=5.6e-27 Score=212.88 Aligned_cols=146 Identities=14% Similarity=0.166 Sum_probs=101.0
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCC-CCCCHHHHHHHH
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI-TTLTVKEAVYYS 139 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~-~~lTv~e~l~~~ 139 (449)
||||++++||+++|+||||||||||+|++.+- ...+++.. ..++++|++.-. ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~---------~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP---------TEVISSDF------CRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG---------GGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC---------CeEEccHH------HHHHhcCcccchhhHHHHHHHHH--
Confidence 68999999999999999999999999986531 11121110 125666654210 0001111111
Q ss_pred HhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH---------
Q 044030 140 AQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA--------- 210 (449)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~--------- 210 (449)
... ......|.....+. ....|||||||++||+|++.+|++++|||||++||+.
T Consensus 64 ---------------~~~-~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~ 126 (171)
T 4gp7_A 64 ---------------YIV-SKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQV 126 (171)
T ss_dssp ---------------HHH-HHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCC
T ss_pred ---------------HHH-HHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCC
Confidence 111 11223455444433 3456999999999999999999999999999999999
Q ss_pred -------HHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 211 -------ASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 211 -------~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
.+..+.+.|++++++ |. |+|++||++ +++.
T Consensus 127 ~~~vi~~~~~~l~~~l~~l~~~-g~--tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 127 EEYVIRKHTQQMKKSIKGLQRE-GF--RYVYILNSP-EEVE 163 (171)
T ss_dssp CHHHHHHHHHHHHHHSTTHHHH-TC--SEEEEECSH-HHHH
T ss_pred CHHHHHHHHHHhhhhhhhHHhc-CC--cEEEEeCCH-HHhh
Confidence 668999999999865 55 999999996 3443
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.92 E-value=4.7e-29 Score=233.19 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=126.7
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-cccCcEEEEcCCCCCCCCCCH
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-LAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-~~~~~i~yv~Q~~~l~~~lTv 132 (449)
+...+++| .++++||+++|+||||||||||+|+|+|+++. ..+.+.+.+.+.. ...+.++|++|++.+++.+|+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 34568888 79999999999999999999999999998742 2333222222211 122468999999888888888
Q ss_pred HHHHHHHHhccC---CCCCCHHHHHHHHHHH------HHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC
Q 044030 133 KEAVYYSAQLQL---PDTMPKSDKKERAEVT------IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP 203 (449)
Q Consensus 133 ~e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP 203 (449)
.+++.+...... ..+.+..+.++++++. ++.+|+.+..+++++.|| +|+.+|++++||||
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep 150 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQAR 150 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHH
Confidence 777632211100 0022344445556665 667788888888899998 99999999999999
Q ss_pred CCCC----CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 204 TSGL----DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 204 tsgL----D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
|+|+ |+..+..+.+.+++++++.|. |+|++|||+ +++..+||++++|.
T Consensus 151 ~~~l~~~~d~~~~~~l~~~l~~l~~~~g~--tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 151 LIGRGTETADVIQRRLDTARIELAAQGDF--DKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHHHGGGGS--SEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhccC--cEEEECCCH-HHHHHHHHHHHHhc
Confidence 9998 788999999999999865555 999999996 68999999999985
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=7.5e-26 Score=207.26 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=103.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec---c--cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK---A--LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP 145 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~---~--~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~ 145 (449)
.++|+||||||||||+++|+|++. |.++|... . ...+.++|++|+. ++.+++ + ..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~-- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF-- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc--
Confidence 589999999999999999999873 23344321 1 1235689999975 222332 1 1110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHHHHHHH
Q 044030 146 DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE-----ILTRPKLLFLDE--PTSGLDSAASYYVMSR 218 (449)
Q Consensus 146 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a-----L~~~P~llllDE--PtsgLD~~~~~~i~~~ 218 (449)
.. -.+..++++..||||||||++||+| ++.+|++++||| ||++||+.....+.+.
T Consensus 64 --~~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~ 125 (178)
T 1ye8_A 64 --FT----------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI 125 (178)
T ss_dssp --CC----------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH
T ss_pred --CC----------------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence 00 0135677889999999999999996 999999999999 9999999999999888
Q ss_pred HHHHHhhcCCCeEEEEEec---CCcHHHHhhcCeEEEeeCCeEEE
Q 044030 219 IAKLGQRDGIGRTIIASIH---QPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 219 l~~l~~~~g~g~tii~~tH---~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
+++ .+ .|+|+++| + ...+..++|+ .+|+++.
T Consensus 126 l~~----~~--~~~i~~~H~~h~-~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 126 MHD----PN--VNVVATIPIRDV-HPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HTC----TT--SEEEEECCSSCC-SHHHHHHHTC----TTCEEEE
T ss_pred Hhc----CC--CeEEEEEccCCC-chHHHHHHhc----CCcEEEE
Confidence 865 23 37888886 5 4678888987 4566654
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.90 E-value=4.4e-26 Score=225.67 Aligned_cols=173 Identities=20% Similarity=0.204 Sum_probs=136.1
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--------c---cCcEEEEcCCCC-C
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--------A---YGTSAYVTQDDT-L 126 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--------~---~~~i~yv~Q~~~-l 126 (449)
++++|+++++|++++|+||||||||||+++|+|++++. +|+|.++|.+... . ...++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999998763 7999999976421 0 135899999988 8
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCC
Q 044030 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK--LLFLDEPT 204 (449)
Q Consensus 127 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~--llllDEPt 204 (449)
+|.+|++|++.++.... .. ..+++.+|+.+..++++.+|| |||++||+|++.+|+ +|+|| ||
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 89999999998864311 10 134667888887888889999 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc--------HHHHhhcCeEEEeeCCeE
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS--------SEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~--------~~i~~~~D~v~~l~~G~i 258 (449)
+|||+..+ ++++.++.|. |+|++||... +.+....+.|.++..|+.
T Consensus 231 sglD~~~~------~~~~~~~~g~--t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 231 TGLNMLPQ------AREFNEVVGI--TGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGHHH------HHHHHHHTCC--CEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCcCHHHH------HHHHHHhcCC--CEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99999855 3455544555 9999999421 234455678888888865
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.89 E-value=2e-27 Score=234.94 Aligned_cols=169 Identities=16% Similarity=0.214 Sum_probs=131.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|+++||++. + + ..+|+|+|++|++|++++|+||||||||||+++|+|++ +|+|
T Consensus 101 ~i~~~~vs~~-y-----~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I------------- 154 (305)
T 2v9p_A 101 FFNYQNIELI-T-----F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV------------- 154 (305)
T ss_dssp HHHHTTCCHH-H-----H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE-------------
T ss_pred eEEEEEEEEE-c-----C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE-------------
Confidence 3788899987 2 2 56999999999999999999999999999999999986 5877
Q ss_pred EEEEcCCCCCCCCCCHHH-HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 117 SAYVTQDDTLITTLTVKE-AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e-~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
++|++|++.+++. |+++ |+.+... .+. .+.+.++.+ |.+.++ +..|||||||| ||||+.+|
T Consensus 155 ~~~v~q~~~lf~~-ti~~~ni~~~~~------~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p 216 (305)
T 2v9p_A 155 LSFANHKSHFWLA-SLADTRAALVDD------ATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAP 216 (305)
T ss_dssp ECGGGTTSGGGGG-GGTTCSCEEEEE------ECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCC
T ss_pred EEEecCccccccc-cHHHHhhccCcc------ccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCC
Confidence 3467888887765 7776 7755311 111 344556654 444445 78999999999 99999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHH
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAF 273 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~ 273 (449)
+||| ||+||+.+...+.. .+|++. ....||+| +|++|++++.|+++++..+|..
T Consensus 217 ~iLl----Ts~LD~~~~~~i~~-----------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 217 PLLV----TSNIDVQAEDRYLY-----------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp CEEE----EESSCSTTCGGGGG-----------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred CEEE----ECCCCHHHHHHHHH-----------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 9999 99999998887751 167753 45789999 9999999999999988666654
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.88 E-value=6.8e-25 Score=221.54 Aligned_cols=172 Identities=20% Similarity=0.206 Sum_probs=136.7
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----------ccCcEEEEcCCCC-CC
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----------AYGTSAYVTQDDT-LI 127 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----------~~~~i~yv~Q~~~-l~ 127 (449)
.++|+++++|++++|+||||||||||+++|+|++++. +|+|.++|.+... .+..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4689999999999999999999999999999998763 7999999976421 0135899999988 88
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCCC
Q 044030 128 TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK--LLFLDEPTS 205 (449)
Q Consensus 128 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~--llllDEPts 205 (449)
|.+|++|++.++.... .. ..+++.+|+.+..++++.+|| |||++||++++.+|+ +|+|| ||+
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 9999999998864311 10 134567788887788889999 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC--------cHHHHhhcCeEEEeeCCeE
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP--------SSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~--------~~~i~~~~D~v~~l~~G~i 258 (449)
|||+..+. +.+.+..|. |+|++||.. .+.+....+.|..+..|+.
T Consensus 289 glD~~~~~------~~~~~~~g~--t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 289 GLNMLPQA------REFNEVVGI--TGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGHHHH------HHHHHHTCC--CEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCHHHHH------HHHHHhcCC--eEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99988653 455544555 999999941 1234455678888888864
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.88 E-value=2.6e-25 Score=216.74 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=98.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM 148 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 148 (449)
.++|+||||||||||+|+|+|+..|. +|+|.++|.+... ..+.++|++|++.+++.+||.||+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~---- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN---- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc----
Confidence 48999999999999999999998774 8999999986532 23579999999999999999999988754321
Q ss_pred CHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 044030 149 PKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228 (449)
Q Consensus 149 ~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 228 (449)
....+.+.+.++ ....+..+.+||||||||+++|||++. ++++|||++|||+.. .+.++.+++. .
T Consensus 77 --~~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~--~ 141 (270)
T 3sop_A 77 --ENCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV--V 141 (270)
T ss_dssp --TTCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT--S
T ss_pred --HHHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc--C
Confidence 111122333333 456677788999999999999999876 999999999999987 5566666643 4
Q ss_pred CeEEEEEecCC
Q 044030 229 GRTIIASIHQP 239 (449)
Q Consensus 229 g~tii~~tH~~ 239 (449)
+||+++|..
T Consensus 142 --~vI~Vi~K~ 150 (270)
T 3sop_A 142 --NIIPVIAKA 150 (270)
T ss_dssp --EEEEEETTG
T ss_pred --cEEEEEecc
Confidence 888888873
No 77
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.88 E-value=2.2e-26 Score=238.65 Aligned_cols=193 Identities=14% Similarity=0.120 Sum_probs=150.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eccc
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKAL 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~---~~~~ 112 (449)
..++++|+++. +. .+..+|+++ |.+.+|++++|+||||||||||+++|+|+.+++ +|.|.++|+ +...
T Consensus 130 ~~l~~~~v~~~-~~----tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~ 200 (438)
T 2dpy_A 130 NPLQRTPIEHV-LD----TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKD 200 (438)
T ss_dssp CTTTSCCCCSB-CC----CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHH
T ss_pred CceEEecccee-cC----CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHH
Confidence 34778888877 21 246799999 999999999999999999999999999998774 899999998 3211
Q ss_pred ----------ccCcEEEEcCC-CCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH
Q 044030 113 ----------AYGTSAYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 ----------~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 181 (449)
..+.++|++|+ ..+++.+||.+|+.+.+...... .+.+ ....+ .+..+|+||
T Consensus 201 ~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~~v---------~~~ld-~l~~lS~g~ 263 (438)
T 2dpy_A 201 FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQHV---------LLIMD-SLTRYAMAQ 263 (438)
T ss_dssp HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TCEE---------EEEEE-CHHHHHHHH
T ss_pred HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CCCH---------HHHHH-hHHHHHHHH
Confidence 13568999995 55677889999998865432100 0001 11112 256799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc-CCCe-----EEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD-GIGR-----TIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~-g~g~-----tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|||+|| +.+|++ |+|||+.....+.+++.++.+.. ..|+ ||++++||+. ..+||++++|.+
T Consensus 264 -qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d 330 (438)
T 2dpy_A 264 -REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD 330 (438)
T ss_dssp -HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS
T ss_pred -HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC
Confidence 999999 889988 99999999999999999987520 1153 9999999975 578999999999
Q ss_pred CeEEEecChhhH
Q 044030 256 GQTVYFGPATAA 267 (449)
Q Consensus 256 G~iv~~g~~~~~ 267 (449)
|+++..|++.++
T Consensus 331 G~Ivl~~~~~~~ 342 (438)
T 2dpy_A 331 GHIVLSRRLAEA 342 (438)
T ss_dssp EEEEECHHHHHT
T ss_pred cEEEEeCCHHHc
Confidence 999999987654
No 78
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.87 E-value=3.4e-22 Score=202.04 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=76.5
Q ss_pred CccCC-CCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 171 NTRIR-RLSGGQKRRVSISIEIL---------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 171 ~~~~~-~LSgGerqRv~ia~aL~---------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
+++++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. . |+|++||. .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----q--t~i~~th~-~ 331 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----Q--AIVTGTEL-A 331 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----E--EEEEESSC-C
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----c--EEEEEEec-c
Confidence 33456 79999999999999999 8999999999999999999999999998763 3 99999995 3
Q ss_pred HHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 241 SEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 241 ~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
. .+|++++|++|+++..|+++++
T Consensus 332 -~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 332 -P---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -T---TCSEEEEEETTEEEECCCTTTS
T ss_pred -c---cCCEEEEEECCEEEecCCHHHH
Confidence 2 8999999999999999988754
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.87 E-value=8.3e-27 Score=220.13 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=111.1
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc------ccCcEEEEcCCCCCCCC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL------AYGTSAYVTQDDTLITT 129 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~------~~~~i~yv~Q~~~l~~~ 129 (449)
..-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.+... ....++|++|++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 35799999999999999999999999999999999986 3 78888 754321 12458899998776654
Q ss_pred CCH-HHHHHH---HHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH-----HHHHHhCCCEEEE
Q 044030 130 LTV-KEAVYY---SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI-----SIEILTRPKLLFL 200 (449)
Q Consensus 130 lTv-~e~l~~---~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i-----a~aL~~~P~llll 200 (449)
++. .+++.+ ....+ +.+ ...++++++...+. ..+ .+|||||+||++| +++++.+|++++|
T Consensus 83 ~~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HHHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hhhccchhhhhhcccccC---CCc----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 321 111111 01111 111 23456666654331 122 5789999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhh------cCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 201 DEPTSGLDSAASYYVMSRIAKLGQR------DGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 201 DEPtsgLD~~~~~~i~~~l~~l~~~------~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
||||+++|..+...+.+.|.++.++ .+. +.|+++|++ ++++..+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~--d~iiv~~~~-~ea~~~~~~ii 205 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNF--NLSIINDDL-TLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCC--SEEEECSSH-HHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCC--CEEEECCCH-HHHHHHHHHHH
Confidence 9999999999999999999887543 222 455555553 34555544443
No 80
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.87 E-value=4.2e-21 Score=192.84 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=71.3
Q ss_pred hhCccCCCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 169 AMNTRIRRLSGGQKR------RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 169 ~~~~~~~~LSgGerq------Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
..++++..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++ |. |||++||++ +
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~--~vi~~sH~~--~ 315 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IP--QVILVSHDE--E 315 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SS--EEEEEESCG--G
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CC--EEEEEEChH--H
Confidence 346778999999999 667778888899999999999999999999999999998744 44 999999994 4
Q ss_pred HHhhcCeEEEee
Q 044030 243 VFQLFHNLCLLS 254 (449)
Q Consensus 243 i~~~~D~v~~l~ 254 (449)
+...||++++|.
T Consensus 316 ~~~~~d~~~~l~ 327 (339)
T 3qkt_A 316 LKDAADHVIRIS 327 (339)
T ss_dssp GGGGCSEEEEEE
T ss_pred HHHhCCEEEEEE
Confidence 788999999986
No 81
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.86 E-value=2.4e-23 Score=204.67 Aligned_cols=185 Identities=13% Similarity=0.166 Sum_probs=122.1
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeccc--ccCcEEEEcCCCCCCCCCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG-KILINGHKKAL--AYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G-~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lT 131 (449)
+..+|+++++.+++|++++|+||||||||||+++|+|...+. +| .|.+.+.+... ..+++.++.+... ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 356899999999999999999999999999999999988653 46 56443322111 0112222333221 12
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH-HHHHHHHHHHHhCCCEEEEeCCCC---C-
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ-KRRVSISIEILTRPKLLFLDEPTS---G- 206 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~~~P~llllDEPts---g- 206 (449)
+.+++.... + +..+..+.++++++..++. .+..+..+|.+| +||+. |+++..+|+++++||||+ +
T Consensus 94 ~~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 94 QSDSLKREI-I------ENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp GCHHHHHHH-H------HHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred hccccccCC-C------CHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 223333221 1 1222333444444433331 233346789999 66666 999999999999999999 5
Q ss_pred --CCH-HHHHHHHHHHHHHHhhcCCCeEEEEEecCCc-H--------------------HHHhhcCeEEEeeCCeE
Q 044030 207 --LDS-AASYYVMSRIAKLGQRDGIGRTIIASIHQPS-S--------------------EVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 207 --LD~-~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~-~--------------------~i~~~~D~v~~l~~G~i 258 (449)
+|. .....+++.|++++++.|. |||+++|+.. . .+.++||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~--~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGV--VLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCC--EEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCC--eEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 555 6778899999999877766 9999999951 2 57889999999998874
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.86 E-value=2.3e-23 Score=208.59 Aligned_cols=130 Identities=17% Similarity=0.206 Sum_probs=106.4
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-c--ccCcEEEEcCCCCCCCCCCHHH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-L--AYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-~--~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
+++++|+.+++|++++|+||||||||||+++|+|+++|. +|.|.++|.+.- . ..+.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999774 899999986421 0 112233332
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
+ |||+||++||+||..+|+++++||||+ .+
T Consensus 224 -----------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e 253 (330)
T 2pt7_A 224 -----------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SE 253 (330)
T ss_dssp -----------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------TH
T ss_pred -----------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HH
Confidence 0 899999999999999999999999998 23
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 215 VMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 215 i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+.+.|+.+. ..+ .|+|+++|+++ +...+|++++|.+|..
T Consensus 254 ~~~~l~~~~-~g~--~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 254 AYDFYNVLC-SGH--KGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHH-TTC--CCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHh-cCC--CEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 567787776 322 38999999974 7889999999998854
No 83
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.86 E-value=2.2e-23 Score=199.78 Aligned_cols=177 Identities=11% Similarity=0.125 Sum_probs=112.4
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 5678999999999999999999999999999999999965 333333 1235699999985 77889999
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~ 213 (449)
+++.+....... ..+.....+.+.+.++.+ .+..+.++..||+||+||+.+ ++++.+|+++|+|||....|..
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--- 149 (245)
T 2jeo_A 77 QKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--- 149 (245)
T ss_dssp HHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH---
T ss_pred HhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH---
Confidence 998775433210 111111123344555543 456677889999999999988 5888899999999999888864
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh-hcCeEEEeeCCeEEEecChhhHHH
Q 044030 214 YVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ-LFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 214 ~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~-~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
+.++ . +.+|++++|+. ..+.+ +++++ ++|+ +.+++..
T Consensus 150 -----l~~~---~--~~~i~v~th~~-~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 150 -----IRDM---F--HLRLFVDTDSD-VRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp -----HHTT---C--SEEEEEECCHH-HHHHHHHHHHT---C--------CHHHHHH
T ss_pred -----HHHh---c--CeEEEEECCHH-HHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 2222 2 44999999973 34433 44444 5664 4555544
No 84
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=8.8e-22 Score=219.15 Aligned_cols=163 Identities=22% Similarity=0.320 Sum_probs=126.1
Q ss_pred HHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH--H---HHHHHHH
Q 044030 84 TLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK--S---DKKERAE 158 (449)
Q Consensus 84 TLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~--~---~~~~~v~ 158 (449)
|...|..+++.+. .|+|.++|+++.. +..+|+.+++.|...+.+...... . .......
T Consensus 383 ~C~~C~g~rl~~~---~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 383 TCSVCGGRRLNRE---ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp ECTTTCSCCBCTT---GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred cchhcccccCChH---hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 3445666667663 8999999987531 344688888887654432211000 0 1112345
Q ss_pred HHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEE
Q 044030 159 VTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRPK--LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIAS 235 (449)
Q Consensus 159 ~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P~--llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~ 235 (449)
+.+..+||... +++++.+|||||||||+||+||+.+|+ +|||||||+|||+.....+++.|+++++ .|. |||++
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~--TvivV 522 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGN--TVIVV 522 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTC--EEEEE
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCC--EEEEE
Confidence 67888999865 799999999999999999999999887 9999999999999999999999999974 455 99999
Q ss_pred ecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 236 IHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 236 tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
+||+ +. ...||+|++| ++|++++.|+++++.
T Consensus 523 tHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 523 EHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp CCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred eCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 9995 44 4569999999 899999999998764
No 85
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.85 E-value=1.8e-21 Score=206.16 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=70.4
Q ss_pred cCCCC-ChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 173 RIRRL-SGGQKRRVSISIEILTRP--KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 173 ~~~~L-SgGerqRv~ia~aL~~~P--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
++..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |. |||++||++ ++...||+
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~--~vi~itH~~--~~~~~~d~ 466 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TR--QVLVVTHLA--QIAARAHH 466 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HS--EEEEECCCH--HHHHHSSE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CC--EEEEEecCH--HHHHhCCE
Confidence 45677 999999999999999999 99999999999999999999999999984 45 999999996 35567999
Q ss_pred EEEeeCC
Q 044030 250 LCLLSAG 256 (449)
Q Consensus 250 v~~l~~G 256 (449)
+++|++|
T Consensus 467 ~~~~~~~ 473 (517)
T 4ad8_A 467 HYKVEKQ 473 (517)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999665
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.84 E-value=2.4e-22 Score=226.90 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=121.2
Q ss_pred eeEEEEe-----eEEEEeecCcccccceeeeeeEEEec-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE
Q 044030 36 VFLTWKD-----LTVTIVSNGKKGSSSILEDLTGYAKP-------GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI 103 (449)
Q Consensus 36 ~~l~~~n-----ls~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I 103 (449)
..|+++| |++.| . ++..+++|++|.+++ |++++|+||||||||||||+| |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~-~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTF-F----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------- 814 (1022)
T ss_dssp CCEEEEEECCCC-----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------
T ss_pred ceEEEEeccccEEEEEe-c----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------
Confidence 3589999 88762 1 346799999999987 999999999999999999999 97632
Q ss_pred EECCEecccccCcEE-EEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHH
Q 044030 104 LINGHKKALAYGTSA-YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK 182 (449)
Q Consensus 104 ~~~g~~~~~~~~~i~-yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 182 (449)
..++| ||||+.. .+||.+++.. .+|+.+........+|++++
T Consensus 815 ----------~aqiG~~Vpq~~~---~l~v~d~I~~------------------------rig~~d~~~~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ----------MAQMGCYVPAEVC---RLTPIDRVFT------------------------RLGASDRIMSGESTFFVELS 857 (1022)
T ss_dssp ----------HHTTTCCEESSEE---EECCCSBEEE------------------------ECC---------CHHHHHHH
T ss_pred ----------HhheeEEeccCcC---CCCHHHHHHH------------------------HcCCHHHHhhchhhhHHHHH
Confidence 01234 8999753 3455554410 12222222233456777766
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE--
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAAS-YYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV-- 259 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~-~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv-- 259 (449)
+ +++|++++.+|+++|||||++|+|+... ..++.+|+.++++.|. ++|++||++ +.+..++|++.++ +|++.
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~--~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~ 932 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKC--RTLFSTHYH-SLVEDYSQNVAVR-LGHMACM 932 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCC--EEEEECCCH-HHHHHTSSCSSEE-EEEEEEC
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCC--EEEEEeCCH-HHHHHhCCcceee-cCeEEEE
Confidence 5 9999999999999999999999999985 5578999999855466 999999995 5677789999887 48887
Q ss_pred EecChh
Q 044030 260 YFGPAT 265 (449)
Q Consensus 260 ~~g~~~ 265 (449)
+.|+++
T Consensus 933 ~~~~~~ 938 (1022)
T 2o8b_B 933 VENECE 938 (1022)
T ss_dssp ------
T ss_pred EecCcc
Confidence 455543
No 87
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.84 E-value=5.9e-23 Score=206.88 Aligned_cols=191 Identities=15% Similarity=0.166 Sum_probs=137.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++.+++++.| . .+..+|+++ |.|.+|++++|+||||||||||+++|+|...++ .|.|.+.|++...
T Consensus 44 ~~i~~~~l~~~~-~----tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 44 DPLLRQVIDQPF-I----LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNE 114 (347)
T ss_dssp CSTTCCCCCSEE-C----CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHH
T ss_pred CCeeecccceec-C----CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHH
Confidence 347888998873 1 246799999 999999999999999999999999999998774 8999998864210
Q ss_pred ---------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh--CccCCCCChHH
Q 044030 113 ---------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM--NTRIRRLSGGQ 181 (449)
Q Consensus 113 ---------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~~~~LSgGe 181 (449)
..+.+.+++|.+. +..+.+.-... ...+.+.....+- +.. -..+..||+||
T Consensus 115 ~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~~-~vl~~ld~~~~lS~g~ 176 (347)
T 2obl_A 115 FLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQGK-NVLLMMDSVTRYARAA 176 (347)
T ss_dssp HHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTTC-EEEEEEETHHHHHHHH
T ss_pred HHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhccc-cHHHHHhhHHHHHHHH
Confidence 1134677776432 22222211100 0001111111110 100 04567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCe-----EEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR-----TIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~-----tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
|||++| +.+|++ |+|||+.....+.+++.++.+..+ |. ||++++||+. ..+||++++|.+|
T Consensus 177 -r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~-GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG 242 (347)
T 2obl_A 177 -RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPK-GSITAIYTVLLESDNVN---DPIGDEVRSILDG 242 (347)
T ss_dssp -HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSS-SEEEEEEEEECCSSCCC---CHHHHHHHHHCSE
T ss_pred -HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCC-CCeeeEEEEEEeCCCCC---ChhhhheEEeeCc
Confidence 899999 688877 999999999999999999874112 66 8999999975 5789999999999
Q ss_pred eEEEecChhhH
Q 044030 257 QTVYFGPATAA 267 (449)
Q Consensus 257 ~iv~~g~~~~~ 267 (449)
+++..+++++.
T Consensus 243 ~Ivl~~~l~~~ 253 (347)
T 2obl_A 243 HIVLTRELAEE 253 (347)
T ss_dssp EEEBCHHHHTT
T ss_pred EEEEeCCHHHc
Confidence 99999887654
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.84 E-value=1.9e-21 Score=206.32 Aligned_cols=156 Identities=14% Similarity=0.117 Sum_probs=122.2
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL 142 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 142 (449)
++.+++|++++|+||||||||||+++++|...+ .|+ +.+.|++|+.. ..+.++. ..+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~------------~vi~~~~ee~~----~~l~~~~---~~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE------------RAILFAYEESR----AQLLRNA---YSW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC------------CEEEEESSSCH----HHHHHHH---HTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC------------CEEEEEEeCCH----HHHHHHH---HHc
Confidence 558999999999999999999999999998754 232 12456676541 1222222 111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HHHHHHH
Q 044030 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA-----ASYYVMS 217 (449)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~-----~~~~i~~ 217 (449)
+.+. ++ +...|+....+..+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.+
T Consensus 332 ----g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 332 ----GMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp ----SCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred ----CCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 1221 12 33567777888899999999999999999999999999999 99999999 9999999
Q ss_pred HHHHHHhhcCCCeEEEEEecCCc---------HHHHhhcCeEEEeeCCe
Q 044030 218 RIAKLGQRDGIGRTIIASIHQPS---------SEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 218 ~l~~l~~~~g~g~tii~~tH~~~---------~~i~~~~D~v~~l~~G~ 257 (449)
+++.+++ .|. |||+++|+.. ..+..+||+|++|++|+
T Consensus 399 ll~~l~~-~g~--tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 399 VTGYAKQ-EEI--TGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHH-TTC--EEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHh-CCC--EEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999874 455 9999999961 35678999999999886
No 89
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.83 E-value=1.5e-23 Score=208.28 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=114.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEE-----------------------EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGY-----------------------AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~-----------------------i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.|+++||++.| .++++++++. +++|+++||+||||||||||+++|+|++
T Consensus 43 ~i~~~~v~~~y--------~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 43 QIDLLEVEEVY--------LPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCHHHHHHTH--------HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEeeehhhhh--------hhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 47888998762 1355555553 8999999999999999999999999998
Q ss_pred CCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCcc
Q 044030 94 GSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR 173 (449)
Q Consensus 94 ~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 173 (449)
++. .|. +.++||+|++.+++. |+.||+.+... .+.+.....+.+.++++.++ ....+.+
T Consensus 115 ~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~----~g~~~~~d~~~~~~~L~~l~-~~~~~~~ 173 (312)
T 3aez_A 115 ARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHR----KGFPESYNRRALMRFVTSVK-SGSDYAC 173 (312)
T ss_dssp HTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----TTSGGGBCHHHHHHHHHHHH-TTCSCEE
T ss_pred ccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHh----cCCChHHHHHHHHHHHHHhC-CCcccCC
Confidence 763 231 358999999999888 99999854211 12233333456778888888 5556778
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 174 ~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
+..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 174 ~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 174 APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 899999999999999999999999999999999986
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.83 E-value=5.8e-24 Score=225.68 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=123.7
Q ss_pred cccceeeeeeE-EEecCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEeccc----ccCcEEEEcCCCCC
Q 044030 54 GSSSILEDLTG-YAKPGHLLAIMGPSGSGKTTLLDA--LAGRLGSDTRQTGKILINGHKKAL----AYGTSAYVTQDDTL 126 (449)
Q Consensus 54 ~~~~iL~~vs~-~i~~Ge~~~IlGpnGaGKSTLL~~--l~G~~~~~~~~~G~I~~~g~~~~~----~~~~i~yv~Q~~~l 126 (449)
++..+|++||+ .+++|++++|+||||||||||+++ ++|+.+|+ +|.|+++|.+... ..+.+||++|+...
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~ 99 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVD 99 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHH
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhc
Confidence 45789999999 999999999999999999999999 78998764 7999999976321 12457899987542
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC-
Q 044030 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS- 205 (449)
Q Consensus 127 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts- 205 (449)
.+. +.+ .... . .. ...++++.+++.+.+++.+..||||| |+++++||||+
T Consensus 100 ~~~------l~~---~~~~-~-~~-----~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe~t~~ 150 (525)
T 1tf7_A 100 EGK------LFI---LDAS-P-DP-----EGQEVVGGFDLSALIERINYAIQKYR-------------ARRVSIDSVTSV 150 (525)
T ss_dssp TTS------EEE---EECC-C-CS-----SCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEECSTTT
T ss_pred cCc------EEE---EecC-c-cc-----chhhhhcccCHHHHHHHHHHHHHHcC-------------CCEEEECCHHHH
Confidence 211 100 0000 0 00 01123445556666677777788775 78999999998
Q ss_pred ----CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH--------HHhhcCeEEEeeC
Q 044030 206 ----GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE--------VFQLFHNLCLLSA 255 (449)
Q Consensus 206 ----gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~--------i~~~~D~v~~l~~ 255 (449)
+||+..+..++++++.+++ .|. |||+++|++... +..+||+|++|++
T Consensus 151 ~~~~~lD~~~~~~l~~ll~~l~~-~g~--tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 151 FQQYDASSVVRRELFRLVARLKQ-IGA--TTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHH-HTC--EEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHHHH-CCC--EEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 5699999999999999985 455 999999997532 3456999999998
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.82 E-value=1.6e-20 Score=209.89 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=112.3
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHH--------HcCCCCCCCceeEEEECCEecccccCcEEEEcCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--------AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDT 125 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l--------~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~ 125 (449)
+.+.+++|+|+.+++|++++|+||||||||||||++ .|..-|. .+.. ++.+ +.
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~~-------------~~~~---d~ 707 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESAE-------------VSIV---DC 707 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEEE-------------EECC---SE
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---cccc-------------chHH---HH
Confidence 345799999999999999999999999999999999 4433221 1110 1100 00
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH--HhCCCEEEEeCC
Q 044030 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI--LTRPKLLFLDEP 203 (449)
Q Consensus 126 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~P~llllDEP 203 (449)
+ +..+|+. +....++|+|+++++.+|+++ +.+|+++|||||
T Consensus 708 i----------------------------------~~~ig~~---d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp 750 (934)
T 3thx_A 708 I----------------------------------LARVGAG---DSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 750 (934)
T ss_dssp E----------------------------------EEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESC
T ss_pred H----------------------------------HHhcCch---hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCC
Confidence 0 1111211 223356888888888888888 999999999999
Q ss_pred CCCCCHHHHHHH-HHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 204 TSGLDSAASYYV-MSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 204 tsgLD~~~~~~i-~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+|||+.....+ +.+++.++++.|. ++|++||+. ++..++|++..+.+|++.+.++.+++
T Consensus 751 ~~GlD~~~~~~i~~~il~~l~~~~g~--~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 751 GRGTSTYDGFGLAWAISEYIATKIGA--FCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHTTCC--EEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCC--EEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999998888 7777888754555 999999994 57789999999999999988876654
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.82 E-value=4.6e-20 Score=204.48 Aligned_cols=135 Identities=23% Similarity=0.382 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHHHhccCCCC---CCH---HHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCC--CEE
Q 044030 128 TTLTVKEAVYYSAQLQLPDT---MPK---SDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRP--KLL 198 (449)
Q Consensus 128 ~~lTv~e~l~~~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P--~ll 198 (449)
..+||.|++.|...+.++.. ... ++..+++ +.|..+||... +++.+.+|||||||||.||++|..+| ++|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 35899999999766643210 000 2334455 45889999875 79999999999999999999999985 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 199 FLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 199 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
+|||||+|||+.....+++.|+++++ .|. |||+++|++ ++ ...||+|++| ++|++++.|+++++.
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~-~G~--TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRD-LGN--TLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHT-TTC--EEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999974 555 999999996 44 4679999999 799999999987653
No 93
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.81 E-value=2.2e-21 Score=182.20 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=101.9
Q ss_pred eeeeee-EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CceeEEEECCEecccccCcEEEEcCCCCCCCCCCH
Q 044030 58 ILEDLT-GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT----RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 58 iL~~vs-~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~----~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv 132 (449)
.|+.+- +-+++|++++|+||||||||||+++|+|...+.. ...|.+++++... ...+.+++++|...+++. |+
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~ 90 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EV 90 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HH
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HH
Confidence 444333 5799999999999999999999999999554310 1234666666431 011234445554444333 44
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH-HHHHHHHHHHHh-------CCCEEEEeCCC
Q 044030 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ-KRRVSISIEILT-------RPKLLFLDEPT 204 (449)
Q Consensus 133 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~~-------~P~llllDEPt 204 (449)
.||+.+. ...++++ ++.+..+.+++. +|+++++||||
T Consensus 91 ~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 91 LKHIYVA-----------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp HHTEEEE-----------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred hhcEEEE-----------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 4443221 1122222 223444555554 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHhhcCCCeEEEEEecCCc---HHHHhhcCeEEEeeCCe
Q 044030 205 SGLDSA-------A-----SYYVMSRIAKLGQRDGIGRTIIASIHQPS---SEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 205 sgLD~~-------~-----~~~i~~~l~~l~~~~g~g~tii~~tH~~~---~~i~~~~D~v~~l~~G~ 257 (449)
+++|+. . ...+++.|++++++.|. |||+++|... ..+...+|++++|++|+
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~--tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDI--AVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEECC---------CCSEEEEEEECT
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCC--eEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999984 2 23788888888877666 9999999532 23788999999998753
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.81 E-value=7.3e-20 Score=203.53 Aligned_cols=133 Identities=20% Similarity=0.340 Sum_probs=110.5
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCH----------HHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhC-
Q 044030 127 ITTLTVKEAVYYSAQLQLPDTMPK----------SDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTR- 194 (449)
Q Consensus 127 ~~~lTv~e~l~~~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~- 194 (449)
+..+||.|.+.|...+. ++. ++..+++ +.+..+||... +++.+.+|||||||||.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 45589999999854432 333 2233444 35788999875 7999999999999999999999999
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhH
Q 044030 195 -PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAA 267 (449)
Q Consensus 195 -P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~ 267 (449)
|++|||||||+|||+.....+++.|+++++ .|. |||+++|++ +. ...||+|++| ++|++++.|+++++
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~--TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~ 615 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGN--TLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYDEL 615 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC--EEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHHHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCC--EEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHHHh
Confidence 589999999999999999999999999974 455 999999996 44 5689999999 79999999999876
Q ss_pred HH
Q 044030 268 NE 269 (449)
Q Consensus 268 ~~ 269 (449)
..
T Consensus 616 ~~ 617 (993)
T 2ygr_A 616 LR 617 (993)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.80 E-value=5e-21 Score=182.03 Aligned_cols=167 Identities=16% Similarity=0.151 Sum_probs=103.3
Q ss_pred eeeee-eEEEecCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCceeEEEECCEeccc----ccCcEEEEcCCCCCCCCC
Q 044030 58 ILEDL-TGYAKPGHLLAIMGPSGSGKTTLLDALA--GRLGSDTRQTGKILINGHKKAL----AYGTSAYVTQDDTLITTL 130 (449)
Q Consensus 58 iL~~v-s~~i~~Ge~~~IlGpnGaGKSTLL~~l~--G~~~~~~~~~G~I~~~g~~~~~----~~~~i~yv~Q~~~l~~~l 130 (449)
.|+.+ .+-+++|++++|+||||||||||+++|+ |...++ .|.+.+++..... ..+.++|++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 44444 2489999999999999999999999999 653332 5677777653211 112356666654333444
Q ss_pred CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC--
Q 044030 131 TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD-- 208 (449)
Q Consensus 131 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD-- 208 (449)
++.++....... ....... .....+.++..+...+..-..+|+++++||||++||
T Consensus 95 ~~~~~~~~~~~~----------~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~ 151 (251)
T 2ehv_A 95 AIVDGVSSVVGL----------PSEEKFV-------------LEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL 151 (251)
T ss_dssp EEEC------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS
T ss_pred EEEEcccccccc----------cccccee-------------ccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc
Confidence 443332211000 0000000 111223444444444444468999999999999998
Q ss_pred ---HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHH---------Hhhc-CeEEEee
Q 044030 209 ---SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV---------FQLF-HNLCLLS 254 (449)
Q Consensus 209 ---~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i---------~~~~-D~v~~l~ 254 (449)
+..+..+.++++.+++. |. |||++||++. ++ ..+| |++++|+
T Consensus 152 ~d~~~~~~~l~~l~~~l~~~-g~--tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 152 EEERKIREVLLKLNTILLEM-GV--TTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp SSGGGHHHHHHHHHHHHHHH-CC--EEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHC-CC--eEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 67777799999998754 55 9999999974 55 5788 9999995
No 96
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.79 E-value=1.6e-20 Score=209.34 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=105.4
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
++.|++||||++++|++++|+||||||||||||+|++..... ..|. .... ..+.++.-+.++..
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa---~~~~i~~~d~i~~~----- 722 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA---EEATIGIVDGIFTR----- 722 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS---SEEEEECCSEEEEE-----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc---hhhhhhHHHHHHHh-----
Confidence 567999999999999999999999999999999998753110 0110 0000 00111111111111
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
+|+.+........+|+||+|++.|+++ +.+|+++||||||+|||+.....
T Consensus 723 -----------------------------ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 723 -----------------------------MGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp -----------------------------C----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred -----------------------------CChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence 222233334457789999999999998 89999999999999999999999
Q ss_pred HH-HHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE-eeCCeEEE
Q 044030 215 VM-SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL-LSAGQTVY 260 (449)
Q Consensus 215 i~-~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~-l~~G~iv~ 260 (449)
+. .+++.++++.|. |||++||++ ++..++|+.-- +.++++.+
T Consensus 773 i~~~il~~L~~~~g~--tvl~vTH~~--el~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 773 IAYATLEYFIRDVKS--LTLFVTHYP--PVCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHTTCC--EEEEECSCG--GGGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCC--eEEEEeCcH--HHHHHHhhcccceEEEEEEE
Confidence 87 778888754555 999999995 46677776532 34455544
No 97
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.79 E-value=1.1e-22 Score=189.67 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=117.7
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCC--CCCCHHHHHHHHHhcc
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI--TTLTVKEAVYYSAQLQ 143 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~~~ 143 (449)
.++|+++||+||||||||||+++|+|++.+ .++|++|++.++ +.+|+.++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 578999999999999999999999997632 378999998776 56899988654321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHH----HHHHHHHHHHhCCCEEEEeCCCCC-------CCHHHH
Q 044030 144 LPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK----RRVSISIEILTRPKLLFLDEPTSG-------LDSAAS 212 (449)
Q Consensus 144 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer----qRv~ia~aL~~~P~llllDEPtsg-------LD~~~~ 212 (449)
.+.....+++.+.++.+++.+..+.++..+|+||+ ||+++|++++.+|+++++||||++ ||+...
T Consensus 61 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 61 ----HPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp ----SGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred ----ChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 11122234567788888888777888899999974 788999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 213 YYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 213 ~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
..+.+.+++..++.|. |++.++|+..
T Consensus 137 ~~~~r~l~r~~~~~g~--t~~~~~~~~~ 162 (211)
T 3asz_A 137 ERFIRRLKRDVLERGR--SLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHHHSCC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHH
Confidence 9999999886544555 9999999843
No 98
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=2e-19 Score=159.63 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=74.4
Q ss_pred hCccCCCCChHHHHHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHH
Q 044030 170 MNTRIRRLSGGQKRRVSIS------IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV 243 (449)
Q Consensus 170 ~~~~~~~LSgGerqRv~ia------~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i 243 (449)
.++++..||||||||++|| ++|+.+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++ ++
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tiiivsH~~--~~ 125 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IP--QVILVSHDE--EL 125 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SS--EEEEEESCG--GG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CC--EEEEEEChH--HH
Confidence 5778899999999999886 8999999999999999999999999999999998744 44 999999996 46
Q ss_pred HhhcCeEEEe--eCCeE
Q 044030 244 FQLFHNLCLL--SAGQT 258 (449)
Q Consensus 244 ~~~~D~v~~l--~~G~i 258 (449)
...||++++| .+|..
T Consensus 126 ~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 126 KDAADHVIRISLENGSS 142 (148)
T ss_dssp GGGCSEEEEEEEETTEE
T ss_pred HHhCCEEEEEEcCCCeE
Confidence 7899999999 45643
No 99
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.79 E-value=1.6e-20 Score=181.96 Aligned_cols=133 Identities=17% Similarity=0.341 Sum_probs=98.0
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
.+|+++| +++|++++|+||||||||||+++|+|+++|. .+|+|.++|.+.. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 9999999999999999999999999998652 2799999887643 333321100
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~ 216 (449)
. .. ..+|++. ..+ |++||++|..+|+++++|||| |+.+...++
T Consensus 75 -----v------~q-----------~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l 117 (261)
T 2eyu_A 75 -----V------NQ-----------REVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL 117 (261)
T ss_dssp -----E------EE-----------EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH
T ss_pred -----e------eH-----------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH
Confidence 0 00 0123321 122 899999999999999999999 988866543
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 217 SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 217 ~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+. + ..|. +|++++|+.. +...+|+++.|..
T Consensus 118 ---~~-~-~~g~--~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 118 ---RA-A-ETGH--LVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp ---HH-H-HTTC--EEEEEECCSS--HHHHHHHHHHTSC
T ss_pred ---HH-H-ccCC--EEEEEeCcch--HHHHHHHHhhhcC
Confidence 33 3 2344 9999999964 6788999988864
No 100
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=1e-21 Score=194.26 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=89.8
Q ss_pred EeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeccc--ccCcE
Q 044030 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR-LGSDTRQTGKILINGHKKAL--AYGTS 117 (449)
Q Consensus 41 ~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~-~~~~~~~~G~I~~~g~~~~~--~~~~i 117 (449)
.||++.| +++.++++++|.| +|+||||||||||+++|+|. ..+ .+| |.++|.+... ..+.+
T Consensus 2 ~~l~~~~------~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~---~~g-i~~~g~~~~~t~~~~~~ 65 (301)
T 2qnr_A 2 SNLPNQV------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERV-ISGAAEKIERTVQIEAS 65 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------C
T ss_pred CCCcceE------CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC---CCC-cccCCcccCCcceEeeE
Confidence 3566662 5678999999998 99999999999999999997 554 378 8888765421 22457
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
+|++|++.....+|++|+..++..... .+..+..++. +.+..+.+++++|||||||+.+|++++ +
T Consensus 66 ~~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~------l~~~~~~~~~~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 66 TVEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISY------IDEQFERYLHDESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp EEEEC---CCEEEEEEEEC----------------CTTHHHH------HHHHHHHHHHHHTSSCCTTCCCCCCCE----E
T ss_pred EEEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHH------HHHHHHHHHHHhCHHhhhhhhhhhhhh----e
Confidence 899999888888999999877543210 0000111111 223456778999999999999988875 9
Q ss_pred EEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 198 LFLDEPTS-GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 198 lllDEPts-gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
+++||||+ |||+... +.++++.++. +.++|++.||..
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~~~--~iilV~~K~Dl~ 168 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHNKV--NIVPVIAKADTL 168 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTTTS--CEEEEECCGGGS
T ss_pred eeeecCcccCCCHHHH----HHHHHHHhcC--CEEEEEEeCCCC
Confidence 99999998 5999873 5666665433 459999999964
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.76 E-value=1.6e-19 Score=198.39 Aligned_cols=146 Identities=21% Similarity=0.154 Sum_probs=105.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG-SDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~-~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
++.+++|+||+ |++++|+||||||||||||+|+|+.. + ..|.+. + .....+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~---~~G~~v----p--a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA---QVGSFV----P--AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH---TTTCCB----S--SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc---ccCcee----e--hhccceeeHHH---hhccCCHH
Confidence 46799999999 99999999999999999999999763 2 245432 1 11234677766 55666666
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCC
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI--LTRPKLLFLDEP---TSGLD 208 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~P~llllDEP---tsgLD 208 (449)
|++. .++|+|+++++.+++++ +.+|+++||||| |++||
T Consensus 630 d~l~-------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD 672 (765)
T 1ewq_A 630 DDLA-------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 672 (765)
T ss_dssp ------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred HHHH-------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence 6542 14689999999999999 999999999999 99999
Q ss_pred HHHH-HHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 209 SAAS-YYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 209 ~~~~-~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+.+. ..+++.|.+ .|. |+|++||+. +...++ .-.+.++++....
T Consensus 673 ~~~~~~~i~~~L~~----~g~--~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 673 GVAIATAVAEALHE----RRA--YTLFATHYF--ELTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp HHHHHHHHHHHHHH----HTC--EEEEECCCH--HHHTCC--CTTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHh----CCC--EEEEEeCCH--HHHHhh--hhcceEEEEEEEE
Confidence 9875 567777765 244 999999994 455555 2223445554443
No 102
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.76 E-value=3.3e-18 Score=177.00 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=67.7
Q ss_pred CCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 174 IRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 174 ~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++ + .++|++||++ .....||+
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~--~~~ii~th~~--~~~~~~d~ 405 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-D--LQFIVISLKN--TMFEKSDA 405 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-T--BEEEEECSCH--HHHTTCSE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC-C--CEEEEEECCH--HHHHhCCE
Confidence 3469999999999999999 579999999999999999999999999998643 3 4999999994 56788999
Q ss_pred EEEee
Q 044030 250 LCLLS 254 (449)
Q Consensus 250 v~~l~ 254 (449)
++.+.
T Consensus 406 ~~~~~ 410 (430)
T 1w1w_A 406 LVGVY 410 (430)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 103
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.76 E-value=1.4e-19 Score=199.70 Aligned_cols=160 Identities=14% Similarity=0.064 Sum_probs=110.0
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
+++.+++|+|++ ++|++++|+||||||||||||+|+|+.... ..| .........+++++| +++.+++.
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPAQKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSSSEEEECCCCE---EEEEEC--
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccchhcccceeHHH---HHhhCCHH
Confidence 346799999999 999999999999999999999999974221 112 111111123455544 45556666
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~ 213 (449)
|++..+ ...+|+|++ +++.+...+.+|+++|||||++|+|+....
T Consensus 661 d~l~~~----------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~ 705 (800)
T 1wb9_A 661 DDLASG----------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGL 705 (800)
T ss_dssp -------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHH
T ss_pred HHHHhh----------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHH
Confidence 655321 123466665 455555678999999999999999998877
Q ss_pred HH-HHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 214 YV-MSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 214 ~i-~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
.+ +.+++.++++.|. ++|++||++ ++..+||++..+.+|++.+....
T Consensus 706 ~i~~~ll~~l~~~~g~--~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 706 SLAWACAENLANKIKA--LTLFATHYF--ELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp HHHHHHHHHHHHTTCC--EEEEECSCG--GGGGHHHHSTTEEEEEEEEEEET
T ss_pred HHHHHHHHHHHhccCC--eEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcC
Confidence 75 7888888754455 999999996 35678999888888888766543
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.75 E-value=2.6e-20 Score=187.86 Aligned_cols=168 Identities=20% Similarity=0.200 Sum_probs=107.2
Q ss_pred ceeeee-eEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEecccccCcEEEEcCCCCCCCCCC
Q 044030 57 SILEDL-TGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDT-RQTGK-ILINGHKKALAYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 57 ~iL~~v-s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~-~~~G~-I~~~g~~~~~~~~~i~yv~Q~~~l~~~lT 131 (449)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|.. ...|. |++++.+.. ..+++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 456665 6899999999999999999999999999987 3320 00267 888886431 12345666666555443 4
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH-------hCCCEEEEeCCC
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL-------TRPKLLFLDEPT 204 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~-------~~P~llllDEPt 204 (449)
+.+|+.+... . -|.+++|++.++++++ .+|+++++||||
T Consensus 196 v~~ni~~~~~------~----------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 196 VLKHIYVARA------F----------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HGGGEEEEEC------C----------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HhhCEEEEec------C----------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 4444432110 0 1355666666666666 689999999999
Q ss_pred CCCCHHH------------HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 205 SGLDSAA------------SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 205 sgLD~~~------------~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
+++|+.. ...++..|++++++.|. |||+++|... .....++.......|+++.++.
T Consensus 242 a~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~--tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 242 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDI--AVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEEECC----------------CCCCCTTC
T ss_pred HhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCc--EEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 9999852 46777888888877766 9999999853 4544555566666777665544
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.75 E-value=1.5e-20 Score=185.96 Aligned_cols=147 Identities=15% Similarity=0.130 Sum_probs=107.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----------ccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----------AYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----------~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
+|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ....++|++|+..++|.+|+++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999774 8999999986421 013589999999999999999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~ 216 (449)
.++.... .. ..+++..|+.+..+.. ++..++||++||||++.+|+.++| .||+.+...++
T Consensus 178 ~~~~~~~----~d--------~~llDt~G~~~~~~~~---~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~ 237 (304)
T 1rj9_A 178 QAMKARG----YD--------LLFVDTAGRLHTKHNL---MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL 237 (304)
T ss_dssp HHHHHHT----CS--------EEEECCCCCCTTCHHH---HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred HHHHhCC----CC--------EEEecCCCCCCchHHH---HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence 8753211 00 0122334443333333 344558999999999999994444 45555555677
Q ss_pred HHHHHHHhhcCCCeEEEEEecCC
Q 044030 217 SRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 217 ~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
+.++.+.+..|. |+|++||+.
T Consensus 238 ~~~~~~~~~~~~--t~iivTh~d 258 (304)
T 1rj9_A 238 EQAKKFHEAVGL--TGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHCC--SEEEEECTT
T ss_pred HHHHHHHHHcCC--cEEEEECCc
Confidence 777777755565 999999984
No 106
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.75 E-value=2.2e-18 Score=190.38 Aligned_cols=109 Identities=22% Similarity=0.402 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCe
Q 044030 154 KERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRP--KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230 (449)
Q Consensus 154 ~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ 230 (449)
.++++ .+..+||.+. +++.+.+|||||||||.||++|+.+| .+|+|||||+|||+.....++++|+++++ .|.
T Consensus 357 ~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~-- 432 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGN-- 432 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTC--
T ss_pred HHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCC--
Confidence 34554 5788999876 89999999999999999999999999 59999999999999999999999999974 455
Q ss_pred EEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 231 TIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 231 tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
|||+++|++ + +...||+|++| ++|++++.|+++++.
T Consensus 433 TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 433 SLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp EEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred EEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999996 3 56789999999 799999999987653
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.74 E-value=2e-19 Score=168.61 Aligned_cols=171 Identities=12% Similarity=0.069 Sum_probs=110.4
Q ss_pred ccceeeeeeE-EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 55 SSSILEDLTG-YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 55 ~~~iL~~vs~-~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
+...|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+. +..
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--------------------~~~ 64 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--------------------SRD 64 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--------------------CHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--------------------CHH
Confidence 3567889886 8999999999999999999999999987643 245555433211 111
Q ss_pred HHHHHHHhccCCCCCCHHHHH--HHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCC--
Q 044030 134 EAVYYSAQLQLPDTMPKSDKK--ERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK--LLFLDEPTSGL-- 207 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~--~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~--llllDEPtsgL-- 207 (449)
+.......... ........ ..++.....++ .. ......|.++.++...+.+...+|+ ++++||||+++
T Consensus 65 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~ 138 (235)
T 2w0m_A 65 SIIRQAKQFNW--DFEEYIEKKLIIIDALMKEKE-DQ---WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD 138 (235)
T ss_dssp HHHHHHHHTTC--CCGGGBTTTEEEEECCC-----CT---TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS
T ss_pred HHHHHHHHhcc--hHHHHhhCCEEEEeccccccC-ce---eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC
Confidence 11110000000 00000000 00000000001 00 1123459999998888888888999 99999999888
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc-------HHHHhhcCeEEEeeCC
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS-------SEVFQLFHNLCLLSAG 256 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~-------~~i~~~~D~v~~l~~G 256 (449)
|+.....+++.|++++++.|. |||+++|+.. ..+.++||++++|+..
T Consensus 139 d~~~~~~~~~~l~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 139 KPAMARKISYYLKRVLNKWNF--TIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp CGGGHHHHHHHHHHHHHHTTE--EEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCC--eEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 999999999999999876655 9999999962 3488899999999864
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.74 E-value=2.5e-18 Score=167.52 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=109.0
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL 144 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~ 144 (449)
-+++|++++|+||||||||||++.|++... .|.++ .|.+.. ....+.|+..++... .+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~-~~~~v~~~~~e~~~~---~~~~r~~---~~g- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGEL-PTGPVIYLPAEDPPT---AIHHRLH---ALG- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCC-CCCCEEEEESSSCHH---HHHHHHH---HHH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccC-CCccEEEEECCCCHH---HHHHHHH---HHH-
Confidence 488999999999999999999999998653 35553 344321 123577877654320 1111111 111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC--CCCHHH---HHHHHHHH
Q 044030 145 PDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS--GLDSAA---SYYVMSRI 219 (449)
Q Consensus 145 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts--gLD~~~---~~~i~~~l 219 (449)
..... ....++++.+++.+..+..+..||+||++++ ++++.+|+++++||||+ ++|... ...+++.|
T Consensus 92 -~~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 92 -AHLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp -TTSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred -hhcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 01111 2356678888888888889999999998865 68889999999999999 999754 48899999
Q ss_pred HHHHhhcCCCeEEEEEecCC
Q 044030 220 AKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 220 ~~l~~~~g~g~tii~~tH~~ 239 (449)
++++++.|. |||+++|+.
T Consensus 164 ~~l~~~~g~--tvi~i~H~~ 181 (279)
T 1nlf_A 164 EAIAADTGC--SIVFLHHAS 181 (279)
T ss_dssp HHHHHHHCC--EEEEEEEC-
T ss_pred HHHHHHcCC--EEEEEecCC
Confidence 999866666 999999995
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.71 E-value=2.6e-19 Score=192.90 Aligned_cols=191 Identities=16% Similarity=0.196 Sum_probs=115.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeee----------eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDL----------TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN 106 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~ 106 (449)
.+.++||+..| .. ..+.+|+.+ +++++. +||+|||||||||||++|+|+..|. .+|.|+++
T Consensus 10 ~i~~~~l~~~~-~~---~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQY-EE---KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRC 80 (608)
T ss_dssp ----------C-HH---HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCCS
T ss_pred hhhhhhhhHHH-HH---HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEc
Confidence 46788998873 11 112344433 355554 9999999999999999999997662 48999999
Q ss_pred CEecc--------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCC
Q 044030 107 GHKKA--------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178 (449)
Q Consensus 107 g~~~~--------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS 178 (449)
|.++. ...+.++|++|+..+++.+||+|++.++........ .++ |
T Consensus 81 g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~-----------s 133 (608)
T 3szr_A 81 PLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGI-----------S 133 (608)
T ss_dssp CEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCC-----------C
T ss_pred CEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------ccc-----------c
Confidence 98731 113468999999999999999999987643210000 001 1
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc------HHHHhh
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEP------TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS------SEVFQL 246 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEP------tsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~------~~i~~~ 246 (449)
++++.++.+....|+++++||| |+|||+..+..+.++++++.++.. +.++++++|+.. ..+...
T Consensus 134 ---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~-~iil~vvt~~~d~a~~~~l~la~~ 209 (608)
T 3szr_A 134 ---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE-TISLVVVPSNVDIATTEALSMAQE 209 (608)
T ss_dssp ---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS-CCEEEEEESSSCTTTCHHHHHHHH
T ss_pred ---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC-CCceEEEeccchhccHHHHHHHHH
Confidence 1112222333458999999999 999999999999999999753322 348999999964 112222
Q ss_pred c-----CeEEEeeCCeEEEecChhhH
Q 044030 247 F-----HNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 247 ~-----D~v~~l~~G~iv~~g~~~~~ 267 (449)
. ..|+++.++.++..|+.+++
T Consensus 210 v~~~g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 210 VDPEGDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp HCSSCCSEEEEEECGGGSSSSSTTCC
T ss_pred HhhcCCceEEEecchhhcCcccHHHH
Confidence 2 45788899888877765443
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.68 E-value=6.7e-18 Score=170.50 Aligned_cols=127 Identities=20% Similarity=0.291 Sum_probs=88.6
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-cCcEEEEcCCCCCCCCCCHHHHHHHHHhcc
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-YGTSAYVTQDDTLITTLTVKEAVYYSAQLQ 143 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 143 (449)
...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+.... ....++++|.......++..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~--------- 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE--------- 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH---------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccccCCHHH---------
Confidence 67899999999999999999999999998652 246665544433321 122345555432221111111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 044030 144 LPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223 (449)
Q Consensus 144 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~ 223 (449)
+||+||..+|++|++|||| |..+. +.+.+++
T Consensus 188 ------------------------------------------~La~aL~~~PdvillDEp~---d~e~~----~~~~~~~ 218 (356)
T 3jvv_A 188 ------------------------------------------ALRSALREDPDIILVGEMR---DLETI----RLALTAA 218 (356)
T ss_dssp ------------------------------------------HHHHHTTSCCSEEEESCCC---SHHHH----HHHHHHH
T ss_pred ------------------------------------------HHHHHhhhCcCEEecCCCC---CHHHH----HHHHHHH
Confidence 9999999999999999999 65554 4444445
Q ss_pred hhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 224 QRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 224 ~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
. .|. |||+++|+.+ .+ ..+||++.|..|
T Consensus 219 ~-~G~--~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 219 E-TGH--LVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp H-TTC--EEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred h-cCC--EEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 3 455 9999999975 34 889999998654
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=5.2e-20 Score=169.97 Aligned_cols=156 Identities=14% Similarity=0.118 Sum_probs=103.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc---cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA---LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP 145 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~ 145 (449)
|++++|+||||||||||+++|+|+++ . +| |.++|.... ...+.++|++|+. .... +++ +++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc-
Confidence 78999999999999999999999885 3 68 988886542 1245789999975 1111 111 11110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHH-HHHH---HHHhCCCEEEEeC--CCCCCCHHHHHHHHHHH
Q 044030 146 DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRV-SISI---EILTRPKLLFLDE--PTSGLDSAASYYVMSRI 219 (449)
Q Consensus 146 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv-~ia~---aL~~~P~llllDE--PtsgLD~~~~~~i~~~l 219 (449)
..+. ..-.....++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|......+.+++
T Consensus 67 -~~~~-------------~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 67 -EPPP-------------GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -CCCS-------------SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -cCCc-------------cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 0000 0001133455567999999988 4444 5789999999999 89999987655555554
Q ss_pred HHHHhhcCCCeEEEE----EecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 220 AKLGQRDGIGRTIIA----SIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 220 ~~l~~~~g~g~tii~----~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+ .. . ++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 133 ~----~~-~--~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 S----TP-G--TIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp H----CS-S--CCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred h----CC-C--cEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4 32 2 4443 338852 3567888888888887643
No 112
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.67 E-value=1.1e-18 Score=161.56 Aligned_cols=177 Identities=13% Similarity=0.090 Sum_probs=101.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccccc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~~~ 114 (449)
.|+++|+++.| + ..++++ +.+++|..++|+|+||||||||+|.|+|... ...++.|.+.+.+.-. ..
T Consensus 3 ~l~~~~~~~~~------~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~-~~- 71 (210)
T 1pui_A 3 NLNYQQTHFVM------S-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE-VA- 71 (210)
T ss_dssp --------CEE------E-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE-EE-
T ss_pred chhhhhhhhee------e-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE-ec-
Confidence 37899999983 2 257888 8899999999999999999999999999861 1012356654322100 00
Q ss_pred CcEEEEcCCCCCC----CCCC---HHHHHHHHHhc-cCC--------CCCCHHHHHHHHHHHHHHcCCchh-hCccCCCC
Q 044030 115 GTSAYVTQDDTLI----TTLT---VKEAVYYSAQL-QLP--------DTMPKSDKKERAEVTIREMGLQDA-MNTRIRRL 177 (449)
Q Consensus 115 ~~i~yv~Q~~~l~----~~lT---v~e~l~~~~~~-~~~--------~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~L 177 (449)
...-++ +.+.+. +.-. .+..+...... ... ...........+.++++..++... ...++..+
T Consensus 72 ~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 72 DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 001111 111110 0000 11122111110 000 000011223345566777787654 36778899
Q ss_pred ChHHHHH-HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhh
Q 044030 178 SGGQKRR-VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225 (449)
Q Consensus 178 SgGerqR-v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 225 (449)
|+||+|| +..+++++.+|+++++|||||++|......+++.|.++.++
T Consensus 151 s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 151 ASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 9999999 89999999999999999999999999999999999998744
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.4e-18 Score=178.82 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=95.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|.++||++. + +.+.+++|+||+| +|+||||||||||+|+|+|...+.. ..|.+.+++.+ ......
T Consensus 11 ~l~~~~l~~~-y-----~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~-~~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 11 YVGFANLPNQ-V-----YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp ----CCCCCC-T-----TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCC-CCCSCC------CCEEEE
T ss_pred cEEEEeccee-E-----CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCC-CCCCcccCCcc-ceeeee
Confidence 5789999887 2 4578999999998 9999999999999999999876421 12222222211 111235
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++|++|++.+++.+||+||+.++.... .......+.+.++ ..++.+++||++||++++.+|+
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp EECC------CEEEEEEECC-----------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCC
Confidence 789999988888899999987764321 0111111222222 1345677889999999999999
Q ss_pred ---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 197 ---LLFLDEPT-SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 197 ---llllDEPt-sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
++++|||| .|||+... ++++.+. . +. +||+++|..
T Consensus 139 ~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v--~iIlVinK~ 177 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KV--NIIPLIAKA 177 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TS--EEEEEEEST
T ss_pred eeEEEEEecCcccCCCHHHH----HHHHHHh-c-cC--cEEEEEEcc
Confidence 99999999 69998873 4455554 2 33 777777763
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.65 E-value=1e-16 Score=149.30 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=103.3
Q ss_pred cceeeeee-EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 56 SSILEDLT-GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 56 ~~iL~~vs-~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
...|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.+ |+..+..+ +...
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~v~---------------~i~~~~~~----~~~~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KKVA---------------YVDTEGGF----SPER 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SEEE---------------EEESSCCC----CHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---CcEE---------------EEECCCCC----CHHH
Confidence 45677776 4899999999999999999999999998 221 2222 33322211 1111
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH--HHHHHHHHHHHhC-CCEEEEeCCCCCCCHH-
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ--KRRVSISIEILTR-PKLLFLDEPTSGLDSA- 210 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe--rqRv~ia~aL~~~-P~llllDEPtsgLD~~- 210 (449)
-....... .... +++++.+ .+...|+++ ++++..+++++.+ |+++++||||+++|+.
T Consensus 62 ~~~~~~~~----~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~ 122 (220)
T 2cvh_A 62 LVQMAETR----GLNP-------EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE 122 (220)
T ss_dssp HHHHHHTT----TCCH-------HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred HHHHHHhc----CCCh-------HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence 11111111 1111 1122222 233445554 5688888899986 9999999999999973
Q ss_pred -------HHHHHHHHHHHHHhhcCCCeEEEEEecCCc------------HHHHhhcCeEEEeeCC
Q 044030 211 -------ASYYVMSRIAKLGQRDGIGRTIIASIHQPS------------SEVFQLFHNLCLLSAG 256 (449)
Q Consensus 211 -------~~~~i~~~l~~l~~~~g~g~tii~~tH~~~------------~~i~~~~D~v~~l~~G 256 (449)
....+++.|++++++.|. |||+++|... ..+...||.+++|+..
T Consensus 123 ~~~~~~~~~~~~~~~L~~l~~~~~~--~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 123 NRSGLIAELSRQLQVLLWIARKHNI--PVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GSSTTHHHHHHHHHHHHHHHHHHTC--CEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCC--EEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 335577778888877766 9999999854 1477899999999864
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.64 E-value=6.9e-18 Score=159.27 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=99.1
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-ccCcEEEEcCCCCCCCCCCH----HHHHHH
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-AYGTSAYVTQDDTLITTLTV----KEAVYY 138 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTv----~e~l~~ 138 (449)
-..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+.+.+... ....++|+||++..|+.+++ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 357899999999999999999999999998752 368999998875432 12458899998766665555 333322
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 044030 139 SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218 (449)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~ 218 (449)
....+ +.+ ++. +.+++..++++||| ||+.++..+.+.
T Consensus 90 ~~~~y---g~~----~~~-------------------------------v~~~l~~G~illLD-----LD~~~~~~i~~~ 126 (219)
T 1s96_A 90 FGNYY---GTS----REA-------------------------------IEQVLATGVDVFLD-----IDWQGAQQIRQK 126 (219)
T ss_dssp TTEEE---EEE----HHH-------------------------------HHHHHTTTCEEEEE-----CCHHHHHHHHHH
T ss_pred HhccC---CCC----HHH-------------------------------HHHHHhcCCeEEEE-----ECHHHHHHHHHH
Confidence 11111 000 011 22334457999999 999999999998
Q ss_pred HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHH
Q 044030 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271 (449)
Q Consensus 219 l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f 271 (449)
+. + +.||++++|++. ++.+ |+ +..| .++++++...+
T Consensus 127 l~----~---~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 127 MP----H---ARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp CT----T---CEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred cc----C---CEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHHH
Confidence 76 2 459999999963 4443 43 6777 57777766544
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.63 E-value=1.5e-20 Score=172.25 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=112.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM 148 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 148 (449)
|++++|+||||||||||+++|++. .+|.+.++|.+.... ...++++|.....+.+++++++.+.+........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999982 268999998654221 2345677765444556888888765432110000
Q ss_pred CHHHHHHHHHHHHHHcCCchhhCccCCCC--ChHHHHHHHHHH------HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044030 149 PKSDKKERAEVTIREMGLQDAMNTRIRRL--SGGQKRRVSISI------EILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220 (449)
Q Consensus 149 ~~~~~~~~v~~~l~~lgL~~~~~~~~~~L--SgGerqRv~ia~------aL~~~P~llllDEPtsgLD~~~~~~i~~~l~ 220 (449)
..+++.+. .....+..+.+ |+|++|++.++. +++.+|+...+|+ +||+..... ++.+.
T Consensus 75 ---------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~ 140 (189)
T 2bdt_A 75 ---------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFE 140 (189)
T ss_dssp ---------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHH
T ss_pred ---------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHh
Confidence 00011110 00001112234 888888888888 9999999888884 899988888 88888
Q ss_pred HHHhhcCCCeEEEEEecC-CcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 221 KLGQRDGIGRTIIASIHQ-PSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 221 ~l~~~~g~g~tii~~tH~-~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
.+. +.+. +||.++|. +. ++.++||+|+ ++|+++..|+++-+
T Consensus 141 ~~~-~~~~--~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 141 SKG-IDER--YFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HTT-CCTT--SEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred hcC-CCcc--EEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 875 3444 99999998 74 6899999999 99999999988644
No 117
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.62 E-value=9.6e-16 Score=139.31 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=70.1
Q ss_pred hCccCCCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 170 MNTRIRRLSGGQKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 170 ~~~~~~~LSgGerqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
.++.+..||||||||++||++|+. .|+++||||||+|||+.+...+.+.|+++++ +.++|++||+. .+..
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~----~~~~ivith~~--~~~~ 131 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK----ESQFIVITLRD--VMMA 131 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT----TSEEEEECSCH--HHHT
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc----CCEEEEEEecH--HHHH
Confidence 345678999999999999999975 4699999999999999999999999999874 23899999994 5778
Q ss_pred hcCeEEEee--CCe
Q 044030 246 LFHNLCLLS--AGQ 257 (449)
Q Consensus 246 ~~D~v~~l~--~G~ 257 (449)
.||+++.+. +|.
T Consensus 132 ~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 132 NADKIIGVSMRDGV 145 (173)
T ss_dssp TCSEEEEEEEETTE
T ss_pred hCCEEEEEEecCCE
Confidence 999998664 564
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.60 E-value=2.2e-18 Score=157.61 Aligned_cols=139 Identities=17% Similarity=0.090 Sum_probs=94.7
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---ccCcEEEEcCCCCCCCCCCHHHHHHHHHh
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AYGTSAYVTQDDTLITTLTVKEAVYYSAQ 141 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 141 (449)
.+++|++++|+||||||||||+++|+|. + ..|.|.++|.+... ....++|++|+.. +.+||.+++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~---~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--P---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--S---SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--c---CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 4779999999999999999999999997 3 26999999875321 1223567777543 45688999876543
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCchhh--CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 044030 142 LQLPDTMPKSDKKERAEVTIREMGLQDAM--NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219 (449)
Q Consensus 142 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l 219 (449)
.....+.. ..++.++..+++.... +..+..+|+|++||+.++|++..+|+++ +|+.....+.+.+
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 21000000 0011111122333332 4456789999999999999999999876 6888888888877
Q ss_pred HHHH
Q 044030 220 AKLG 223 (449)
Q Consensus 220 ~~l~ 223 (449)
+.+.
T Consensus 145 ~~l~ 148 (191)
T 1zp6_A 145 ADLG 148 (191)
T ss_dssp TCCG
T ss_pred hccC
Confidence 7665
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.59 E-value=2.8e-18 Score=164.01 Aligned_cols=146 Identities=21% Similarity=0.253 Sum_probs=103.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEecccc-cCcEEEEcCCCCCCCCCCHHHHHHHHHhcc
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALA---GRLGSDTRQTGKILINGHKKALA-YGTSAYVTQDDTLITTLTVKEAVYYSAQLQ 143 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~---G~~~~~~~~~G~I~~~g~~~~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 143 (449)
++++++|+||||||||||+++|+ |+..+ .+|+|.++|.+.... ...+.+++|+..+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 98765 478888876532111 123456678888888889999998754210
Q ss_pred CC-----CCCCHHHHHHHHHHHHH--HcC------------CchhhCccCCCCChHHHHHHHHHHHH-HhCCCEEEEe--
Q 044030 144 LP-----DTMPKSDKKERAEVTIR--EMG------------LQDAMNTRIRRLSGGQKRRVSISIEI-LTRPKLLFLD-- 201 (449)
Q Consensus 144 ~~-----~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~~~~LSgGerqRv~ia~aL-~~~P~llllD-- 201 (449)
.. .+.+... ..++.+.. .++ +....++++..||| |+ +++ +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 00 0111111 12222221 223 34556788899999 66 677 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhh
Q 044030 202 --EPTSGLDSAASYYVMSRIAKLGQR 225 (449)
Q Consensus 202 --EPtsgLD~~~~~~i~~~l~~l~~~ 225 (449)
|||+|||..+...+.+.|+.+.++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999998753
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.58 E-value=4.2e-19 Score=179.90 Aligned_cols=169 Identities=15% Similarity=0.069 Sum_probs=104.8
Q ss_pred eeeeeeEEEec--CeEEEEECCCCCcHHHHHHHHHcCCCCCCCce----eEEEECCEecccccCcEEEEcCCCCCCCCCC
Q 044030 58 ILEDLTGYAKP--GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT----GKILINGHKKALAYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 58 iL~~vs~~i~~--Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~----G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lT 131 (449)
+.+.|++.|.+ |+.++|+||||||||||+++|+|++++ .+ |+|.+++... ..+..++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~---~~~~e~G~i~i~~~~~-----------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT---TSAWEYGREFVFEKLG-----------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC---EEECCTTHHHHHHSSS-----------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC---CcchhhHHHHHHhhcC-----------CCcccCChhH
Confidence 46779999999 999999999999999999999999876 36 6665532100 0000011112
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc--CCchhhCccCCCCChHHHHHHHHHHHHH-hCCCEEEEeC---CC-
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GLQDAMNTRIRRLSGGQKRRVSISIEIL-TRPKLLFLDE---PT- 204 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv~ia~aL~-~~P~llllDE---Pt- 204 (449)
. +++.+...- .......+.+.+ +..+..++.+..+|+|+++|..+++++. .+|++++||| |+
T Consensus 223 ~-~~I~~~~q~----------~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~ 291 (365)
T 1lw7_A 223 Y-PQMALGHQR----------YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV 291 (365)
T ss_dssp H-HHHHHHHHH----------HHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC--
T ss_pred H-HHHHHHHHH----------HHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcc
Confidence 2 333332110 000000000101 0112223334456777788888888775 5999999999 65
Q ss_pred -----CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 205 -----SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 205 -----sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
.++|+..+..+.+.|+++.++.|. +||+++|. . +..+++|.+.++++
T Consensus 292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~--~ililde~-~-~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKV--PYIEIESP-S-YLDRYNQVKAVIEK 343 (365)
T ss_dssp ---------CCSHHHHHHHHHHHHHGGGC--CCEEEECS-S-HHHHHHHHHHHHHH
T ss_pred cCCCcCCccHHHHHHHHHHHHHHHHHcCC--CEEEeCCC-C-HHHHHHHHHHHHHH
Confidence 589999999999999998755555 99999975 3 56778887776653
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.56 E-value=5.6e-16 Score=157.42 Aligned_cols=130 Identities=15% Similarity=0.298 Sum_probs=94.6
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-cCcEEEEcCCCCCCCCCCHHHHH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-YGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
+|++++ +++|++++|+||||||||||+++|+|++++. .+|+|.+.|.+.... ...++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 7899999999999999999999999988652 169997776554322 23567777741
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~ 216 (449)
+|++ +..+ +.+|+.+|..+|+++++|||+ |+.+...
T Consensus 191 ---------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~-- 226 (372)
T 2ewv_A 191 ---------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVET-- 226 (372)
T ss_dssp ---------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH--
T ss_pred ---------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH--
Confidence 1111 1233 469999999999999999999 7665433
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 217 SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 217 ~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
.++. + ..|. +|++++|+.+ +...+|+++.|.
T Consensus 227 -~l~~-~-~~g~--~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 227 -ALRA-A-ETGH--LVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp -HHHH-H-TTTC--EEEECCCCCS--HHHHHHHHHHTS
T ss_pred -HHHH-H-hcCC--EEEEEECcch--HHHHHHHHHHhc
Confidence 3443 3 3344 9999999953 788899987764
No 122
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.56 E-value=1.8e-15 Score=152.41 Aligned_cols=121 Identities=18% Similarity=0.130 Sum_probs=90.7
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEecc-cccCcEEEEcCCCCCCCCCCHHH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG-SDTRQTGKILIN-GHKKA-LAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~-~~~~~~G~I~~~-g~~~~-~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
-++++++. .+|++++|+||||||||||+|+|+|... + .+|+|.++ |.... .....++|++|+..+++.+||+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI---LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC---CCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc---ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 45666664 4899999999999999999999999987 6 48999987 65432 22356899999999999889988
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
+ . + ...+.++....+.++++.+|+.+..+..+.++| ||+||++||+++
T Consensus 281 ~---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp C---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred h---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 4 1 1 134555566778889999999999999999999 999999999764
No 123
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.55 E-value=5.2e-15 Score=139.72 Aligned_cols=159 Identities=16% Similarity=0.236 Sum_probs=90.3
Q ss_pred eeeeee-EEEecCeEEEEECCCCCcHHHHHHHHHc--CCCCC--CCceeEEEECCEecccccCcEEEEcCCCCCCCCCCH
Q 044030 58 ILEDLT-GYAKPGHLLAIMGPSGSGKTTLLDALAG--RLGSD--TRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 58 iL~~vs-~~i~~Ge~~~IlGpnGaGKSTLL~~l~G--~~~~~--~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv 132 (449)
.|+.+- +-+++|++++|+||||||||||++.|++ ..++. ....|.+++++... + ..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~---------------~----~~ 72 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT---------------F----RP 72 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------C----CH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC---------------c----CH
Confidence 344433 5799999999999999999999999999 44330 01245666655421 0 11
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH-HHHHHHHH--hCCCEEEEeCCCCCCCH
Q 044030 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR-VSISIEIL--TRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 133 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR-v~ia~aL~--~~P~llllDEPtsgLD~ 209 (449)
.+.......+ +.... ++++.+.+ ....+..+... +.-+.+++ .+|+++++|||++.+|+
T Consensus 73 ~~~~~~~~~~----g~~~~-------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 73 ERLLAVAERY----GLSGS-------DVLDNVAY-------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHT----TCCHH-------HHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHc----CCCHH-------HHhhCeEE-------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 1111111111 11111 11121111 12244444332 22233333 58999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH-------------------hhcCeEEEeeCC
Q 044030 210 A-------A-----SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF-------------------QLFHNLCLLSAG 256 (449)
Q Consensus 210 ~-------~-----~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~-------------------~~~D~v~~l~~G 256 (449)
. . ...++..|++++++.|. |||+++|... +.. .+||.+++|+.|
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~--tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGV--AVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCC--EEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCC--EEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 45677778888777666 9999999743 222 279999999865
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.54 E-value=1.2e-15 Score=154.52 Aligned_cols=136 Identities=19% Similarity=0.156 Sum_probs=99.7
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-cc--ccCcEEEEc-CCCCCCCCCCHHH
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-AL--AYGTSAYVT-QDDTLITTLTVKE 134 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~-~~--~~~~i~yv~-Q~~~l~~~lTv~e 134 (449)
++++|+.+++|++++|+||||||||||+++|+|+++|. +|.|.++|... .. ..+.++|++ |++.+-
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~------- 234 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEE------- 234 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccc-------
Confidence 49999999999999999999999999999999999774 89999998531 11 234688888 554320
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
++++...|..|+.++..+|+.+++|||.. ..
T Consensus 235 ------------------------------------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~ 265 (361)
T 2gza_A 235 ------------------------------------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GE 265 (361)
T ss_dssp ----------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------TH
T ss_pred ------------------------------------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HH
Confidence 02222355666677777899999999986 34
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 215 VMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 215 i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+.+.|+.+. ... .|++.++|..+ ....+||+..+..|..
T Consensus 266 ~~~~l~~l~-~g~--~~~l~t~H~~~--~~~~~~Rl~~l~~~~~ 304 (361)
T 2gza_A 266 AYDFINVAA-SGH--GGSITSCHAGS--CELTFERLALMVLQNR 304 (361)
T ss_dssp HHHHHHHHH-TTC--CSCEEEEECSS--HHHHHHHHHHHHTTST
T ss_pred HHHHHHHHh-cCC--CeEEEEECCCC--HHHHHHHHHHHHhccc
Confidence 566777775 322 37899999953 6888999999987743
No 125
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=7.8e-16 Score=158.11 Aligned_cols=180 Identities=16% Similarity=0.179 Sum_probs=113.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHL--LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~--~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
.+++++ ++. + ++.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-.. ........
T Consensus 16 ~l~~~~-~~~-y-----~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~~~~~ 81 (427)
T 2qag_B 16 TVPLAG-HVG-F-----DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQPGVQL 81 (427)
T ss_dssp -CCCCC-CC--C-----C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEE
T ss_pred eEEEee-EEE-E-----CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCccceE
Confidence 345555 544 1 3455 9999999999999 99999999999999999999741 222111 00111112
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCC-CH---HHHHHHHHHHHHHc-CCc----hhhCccC-----------
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM-PK---SDKKERAEVTIREM-GLQ----DAMNTRI----------- 174 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~-~~---~~~~~~v~~~l~~l-gL~----~~~~~~~----------- 174 (449)
+.++|++|++.+++.+||.||+.|+.... ... .. ........+.+... ++. ...|.++
T Consensus 82 ~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 82 QSNTYDLQESNVRLKLTIVSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEEC--CEEEEEEEEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eeEEEEeecCccccccchhhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 46899999999888999999986653210 000 00 01233455556654 443 1223331
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhhcCCCeEEEEEecC
Q 044030 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAK-LGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~-l~~~~g~g~tii~~tH~ 238 (449)
.+|+-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +. ..|. +|+.++.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi--~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGV--QIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBC--CCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCC--cEEecCCC
Confidence 3566666 7899999999999999999999999999999999987 65 4555 88888765
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.52 E-value=9.6e-19 Score=174.16 Aligned_cols=162 Identities=14% Similarity=0.096 Sum_probs=101.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC-----CCceeEEEECCEecccc--------------------cCcEEEE---c
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGSD-----TRQTGKILINGHKKALA--------------------YGTSAYV---T 121 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~~-----~~~~G~I~~~g~~~~~~--------------------~~~i~yv---~ 121 (449)
++++|+|+||||||||||+|+|..... .+..|+|.++|.+.... .+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999986210 12489999999764321 0124555 5
Q ss_pred CCCCCCCCCCHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEE
Q 044030 122 QDDTLITTLTVKEAVYYSAQLQLPDTM---PKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLL 198 (449)
Q Consensus 122 Q~~~l~~~lTv~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ll 198 (449)
|+..++++.++.|+..++......... +......+++.++..+++.+..++.. ++|+||+||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC
Confidence 665555566666665432100000000 00000001112233345545444443 79999999999888888999987
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcC
Q 044030 199 FLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248 (449)
Q Consensus 199 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D 248 (449)
||| ..+.+.|++++ . +.+|++++|++. ++..++|
T Consensus 164 --de~---------~~l~~~l~~l~-~---~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 164 --GEA---------EKLHERLARIN-A---RAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp --SCT---------HHHHHHHHHHC-S---SSCEEECCSSCC-CGGGGSC
T ss_pred --CHH---------HHHHHHHHHhC-C---CCeEEEecccCC-CHHHHhC
Confidence 998 67888888875 2 449999999864 3444444
No 127
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.52 E-value=2.6e-16 Score=163.84 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=103.6
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----------ccCcEEEEcCCCCCC
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----------AYGTSAYVTQDDTLI 127 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----------~~~~i~yv~Q~~~l~ 127 (449)
-+++||++++|++++|+||||||||||+++|+|++.+. +|+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999998763 7999998755311 124589999998888
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH-hCC-CEEEEeCCCC
Q 044030 128 TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL-TRP-KLLFLDEPTS 205 (449)
Q Consensus 128 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~-~~P-~llllDEPts 205 (449)
+.+||++++.++..-. .. . .+++..|..+.......+ .+|++.+++++. ..| .++|..+|++
T Consensus 360 p~~tV~e~l~~a~~~~----~D------v--VLIDTaGrl~~~~~lm~E----L~kiv~iar~l~~~~P~evLLvLDatt 423 (503)
T 2yhs_A 360 SASVIFDAIQAAKARN----ID------V--LIADTAGRLQNKSHLMEE----LKKIVRVMKKLDVEAPHEVMLTIDAST 423 (503)
T ss_dssp HHHHHHHHHHHHHHTT----CS------E--EEECCCCSCCCHHHHHHH----HHHHHHHHHTTCTTCSSEEEEEEEGGG
T ss_pred HHHHHHHHHHHHHhcC----CC------E--EEEeCCCccchhhhHHHH----HHHHHHHHHHhccCCCCeeEEEecCcc
Confidence 8899999998875321 00 0 011222221111111112 247788888663 457 4555555888
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecC
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~ 238 (449)
|.|.. +.++.+.+..+. |.|++||-
T Consensus 424 Gq~al------~~ak~f~~~~~i--tgvIlTKL 448 (503)
T 2yhs_A 424 GQNAV------SQAKLFHEAVGL--TGITLTKL 448 (503)
T ss_dssp THHHH------HHHHHHHHHTCC--SEEEEECG
T ss_pred cHHHH------HHHHHHHhhcCC--CEEEEEcC
Confidence 86554 345555544555 99999994
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.51 E-value=2e-16 Score=141.80 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=66.3
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
+.+.+++++||++++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.++...+....|++|+..++ .+||.
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCT
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCCcceeccccc-cCCcH
Confidence 4567999999999999999999999999999999999998 63 8999999976521111012799998888 89999
Q ss_pred HHHHH
Q 044030 134 EAVYY 138 (449)
Q Consensus 134 e~l~~ 138 (449)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99854
No 129
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.51 E-value=1.2e-15 Score=152.39 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=100.8
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----------ccCcEEEEcCCCCCCCCCCHHH
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----------AYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----------~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
.++|++++|+||||||||||+++|+|++++. +|+|.+.|.+... ....+.|++|...+.|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3689999999999999999999999998764 8999999987421 0124669999999999999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
++.++..... .. .+++..|+.+..+..+.+|| .+++++..++.+++||.++ | .+
T Consensus 203 ~l~~~~~~~~----d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t-~------~~ 256 (328)
T 3e70_C 203 AIQHAKARGI----DV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALA-G------NA 256 (328)
T ss_dssp HHHHHHHHTC----SE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG-T------TH
T ss_pred HHHHHHhccc----hh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHH-H------HH
Confidence 9987643210 00 01222344333333333444 3888888888888888544 3 45
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecC
Q 044030 215 VMSRIAKLGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 215 i~~~l~~l~~~~g~g~tii~~tH~ 238 (449)
+++.++.+.+..+. |+|++||.
T Consensus 257 ~~~~~~~~~~~~~i--t~iilTKl 278 (328)
T 3e70_C 257 IVEQARQFNEAVKI--DGIILTKL 278 (328)
T ss_dssp HHHHHHHHHHHSCC--CEEEEECG
T ss_pred HHHHHHHHHHhcCC--CEEEEeCc
Confidence 66677777766655 99999996
No 130
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.49 E-value=7e-16 Score=158.62 Aligned_cols=162 Identities=16% Similarity=0.127 Sum_probs=99.8
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCC----------CCCCC
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQD----------DTLIT 128 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~----------~~l~~ 128 (449)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.......++++.++ +.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 479999999999999999999999999999999742 12222211111223444433 22222
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHH--HHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDK--KERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSG 206 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsg 206 (449)
. ..++ ..+..... .++++.++..+++. +.++.+||+|++|++.+|++|+..|.++++ ++
T Consensus 218 ~--a~~~----------~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NK 278 (416)
T 1udx_A 218 G--ASEG----------KGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NK 278 (416)
T ss_dssp C--GGGS----------CCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----EC
T ss_pred c--hhhh----------hhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----EC
Confidence 1 0000 01111100 01122233334444 566788999999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 207 LDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 207 LD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
+|...+ ..++.+++..++.+. +++++|..-...+.++++.+.
T Consensus 279 lDl~~~-~~~~~l~~~l~~~g~--~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 279 VDLLEE-EAVKALADALAREGL--AVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CTTSCH-HHHHHHHHHHHTTTS--CEEECCTTTCTTHHHHHHHHH
T ss_pred CChhhH-HHHHHHHHHHHhcCC--eEEEEECCCccCHHHHHHHHH
Confidence 999877 555555554444444 666555332445666666543
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.48 E-value=5.2e-17 Score=162.94 Aligned_cols=171 Identities=17% Similarity=0.190 Sum_probs=115.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++.+|+++. + +.+.+|+++|+++.+|++++|+||||||||||+|+|+|++.+. +|+|.+.|.+...
T Consensus 30 ie~~~~~~~-~-----~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~ 100 (337)
T 2qm8_A 30 AESRRADHR-A-----AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGG 100 (337)
T ss_dssp HTCSSHHHH-H-----HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCC
T ss_pred HeeCCcccc-c-----ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCccccccc
Confidence 456667665 1 3467999999999999999999999999999999999998663 7999999876421
Q ss_pred ----ccCcEEEEcCCCCCCCCCC------------HHHHHHHH-----------------------------HhccCCCC
Q 044030 113 ----AYGTSAYVTQDDTLITTLT------------VKEAVYYS-----------------------------AQLQLPDT 147 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lT------------v~e~l~~~-----------------------------~~~~~~~~ 147 (449)
....++|++|++.+++..+ +.|.+... ..+..+.
T Consensus 101 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~- 179 (337)
T 2qm8_A 101 SILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG- 179 (337)
T ss_dssp CSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC-
T ss_pred chHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC-
Confidence 1245899999987765321 23332110 0000000
Q ss_pred CCHHHH---HHHHHHHHHHcCCchhhCc-cCCCCChHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHH
Q 044030 148 MPKSDK---KERAEVTIREMGLQDAMNT-RIRRLSGGQKRRVSISIEILT------RPKLLFLDEPTSGLDSAASYYVMS 217 (449)
Q Consensus 148 ~~~~~~---~~~v~~~l~~lgL~~~~~~-~~~~LSgGerqRv~ia~aL~~------~P~llllDEPtsgLD~~~~~~i~~ 217 (449)
...+. +..+.+....+.+ +..|. ....+|+|++|++..+++++. +|++++ +|++|......+++
T Consensus 180 -~~~~~~~i~~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 180 -AGDELQGIKKGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWS 253 (337)
T ss_dssp -C------CCTTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHH
T ss_pred -CcccHHHHHHHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHH
Confidence 00000 0011122222223 33442 235689999999999999987 688887 99999999999999
Q ss_pred HHHHHHh
Q 044030 218 RIAKLGQ 224 (449)
Q Consensus 218 ~l~~l~~ 224 (449)
.|.++.+
T Consensus 254 ~I~~~~~ 260 (337)
T 2qm8_A 254 RIEDHRS 260 (337)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988763
No 132
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.48 E-value=9.3e-16 Score=139.19 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=76.0
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL 142 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 142 (449)
++.+++|+.++|.||||+|||||+++|++.+.+. +|. .+.| +++.+.+....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~-------------~~~~----------~~~~~~~~~~~-- 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK---KGI-------------RGYF----------FDTKDLIFRLK-- 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH---SCC-------------CCCE----------EEHHHHHHHHH--
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH---cCC-------------eEEE----------EEHHHHHHHHH--
Confidence 4566789999999999999999999999987431 231 0112 23333332111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHH
Q 044030 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS-GLDSAASYYVMSRIAK 221 (449)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts-gLD~~~~~~i~~~l~~ 221 (449)
.....-.. . -....+.+|++|+||||++ ++|+..+..+.+++..
T Consensus 84 ----------------~~~~~~~~-----------~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 84 ----------------HLMDEGKD-----------T--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY 128 (180)
T ss_dssp ----------------HHHHHTCC-----------S--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHH
T ss_pred ----------------HHhcCchH-----------H--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 00010000 0 1123345999999999985 9999999999999988
Q ss_pred HHhhcCCCeEEEEEecCCcHH
Q 044030 222 LGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 222 l~~~~g~g~tii~~tH~~~~~ 242 (449)
..+ .|. ++|++||.+..+
T Consensus 129 ~~~-~~~--~ii~tsn~~~~~ 146 (180)
T 3ec2_A 129 RYN-NLK--STIITTNYSLQR 146 (180)
T ss_dssp HHH-TTC--EEEEECCCCSCC
T ss_pred HHH-cCC--CEEEEcCCChhH
Confidence 864 344 999999997543
No 133
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.47 E-value=8.9e-14 Score=141.05 Aligned_cols=77 Identities=23% Similarity=0.272 Sum_probs=67.8
Q ss_pred ccCCCCChHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 172 TRIRRLSGGQKRRV------SISIEILTR-PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 172 ~~~~~LSgGerqRv------~ia~aL~~~-P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
.++..|||||+||+ ++|++|+.+ |+++||||||+|||+..+..+.+.|+++. . +. +||++||++ ++.
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~--~vi~~th~~--~~~ 349 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S-IP--QMIIITHHR--ELE 349 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S-CS--EEEEEESCG--GGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c-CC--eEEEEEChH--HHH
Confidence 45678999999988 567888999 99999999999999999999999999875 2 23 899999996 367
Q ss_pred hhcCeEEEee
Q 044030 245 QLFHNLCLLS 254 (449)
Q Consensus 245 ~~~D~v~~l~ 254 (449)
..||++++|+
T Consensus 350 ~~~d~~~~l~ 359 (371)
T 3auy_A 350 DVADVIINVK 359 (371)
T ss_dssp GGCSEEEEEE
T ss_pred hhCCEEEEEE
Confidence 8999999997
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.45 E-value=3.2e-14 Score=126.00 Aligned_cols=98 Identities=18% Similarity=0.329 Sum_probs=71.1
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
.+|+++ +|+.++|+||||||||||+++|+|...+ +| ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~~~-------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMPLT-------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSCCC--------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhhHH--------
Confidence 467777 8999999999999999999999998754 24 01233332211100
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~ 216 (449)
+++.+|++|++|||++ +|...+..+.
T Consensus 79 -----------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~ 104 (149)
T 2kjq_A 79 -----------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLF 104 (149)
T ss_dssp -----------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHH
T ss_pred -----------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHH
Confidence 2356899999999998 6665588899
Q ss_pred HHHHHHHhhcCCCeE-EEEEecCCcH
Q 044030 217 SRIAKLGQRDGIGRT-IIASIHQPSS 241 (449)
Q Consensus 217 ~~l~~l~~~~g~g~t-ii~~tH~~~~ 241 (449)
+++..+.++ |+ + +|+++|.+..
T Consensus 105 ~li~~~~~~-g~--~~iiits~~~p~ 127 (149)
T 2kjq_A 105 SIFNRFRNS-GK--GFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHH-TC--CEEEEEESSCTT
T ss_pred HHHHHHHHc-CC--cEEEEECCCCHH
Confidence 999998754 43 7 8999997543
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.44 E-value=5.5e-15 Score=145.95 Aligned_cols=117 Identities=14% Similarity=0.252 Sum_probs=84.4
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecccc-----cCcEEEEcCCCCCC-----CCCCH
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI---NGHKKALA-----YGTSAYVTQDDTLI-----TTLTV 132 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~---~g~~~~~~-----~~~i~yv~Q~~~l~-----~~lTv 132 (449)
+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|++.+.. .+.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~---~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL---RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC---CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC---cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 4569999999999999999999999 8766 4899999 88764321 13579999998653 78899
Q ss_pred HHHH--HHH------HhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHH
Q 044030 133 KEAV--YYS------AQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 133 ~e~l--~~~------~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~ 189 (449)
|++ .|. ++++ ......+...++.++++.++|.+ ..+.+++.|||.++|++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~--~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYP--DCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHST--TCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCC--CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 453 1122 11122233456889999999986 889999999999999999986
No 136
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.42 E-value=5.3e-15 Score=145.28 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=88.2
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHh---cc
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQ---LQ 143 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~---~~ 143 (449)
.++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++. ++++++.+... +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 46789999999999999999999998754 22 0 12345566999988875 88899887631 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCc------h--hhCccCCCCChHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHHH
Q 044030 144 LPDTMPKSDKKERAEVTIREMGLQ------D--AMNTRIRRLSGGQKRRVSIS--IEILTRPKLLFLDEPTSGLDSAA 211 (449)
Q Consensus 144 ~~~~~~~~~~~~~v~~~l~~lgL~------~--~~~~~~~~LSgGerqRv~ia--~aL~~~P~llllDEPtsgLD~~~ 211 (449)
...+.+.........+.++.+.-. . ....+...+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 001112222233455666666332 1 12344478999999999987 555 999999999999999853
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.39 E-value=4.1e-16 Score=160.51 Aligned_cols=134 Identities=23% Similarity=0.234 Sum_probs=93.1
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---------cCcEEEEc------
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA---------YGTSAYVT------ 121 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~---------~~~i~yv~------ 121 (449)
.+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++... ...+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 366666 4 3799999999999999999999999998763 79999988765321 12344544
Q ss_pred ---CCCCC--CCC----CCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 122 ---QDDTL--ITT----LTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 122 ---Q~~~l--~~~----lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
|++.. +.. .|+.+++.++..-+.. .......... +...+..+|+.+.. .+..|||||+|| ||++|
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL 306 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTL 306 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhh
Confidence 88765 344 6889998876421100 0000011112 23356778987754 678999999999 99999
Q ss_pred HhCCCEEEE
Q 044030 192 LTRPKLLFL 200 (449)
Q Consensus 192 ~~~P~llll 200 (449)
+.+|++..-
T Consensus 307 ~~~p~~~~~ 315 (418)
T 1p9r_A 307 CPDCKEPYE 315 (418)
T ss_dssp CTTTCEEEE
T ss_pred cCCCCccCC
Confidence 999998763
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=3e-13 Score=135.16 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=76.9
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeccc---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC
Q 044030 72 LAIMGPSGSGKTTLLDALAG-RLGSDTRQTGKILINGHKKAL---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT 147 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G-~~~~~~~~~G~I~~~g~~~~~---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 147 (449)
+.|.||||+|||||+++|+| +..+ ..|.+.++|.+... ....+++++|.+.+.-... + .. .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP---GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---N 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT---TCCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC---CCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---C
Confidence 89999999999999999999 6655 37999999865321 1245778888664321100 0 00 0
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 044030 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227 (449)
Q Consensus 148 ~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g 227 (449)
......++.++++....++.+. . .||| +..+|+++++|||++ ||+.++..+.+.|.+..+
T Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~--- 163 (354)
T 1sxj_E 104 NDRIVIQELLKEVAQMEQVDFQ----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK--- 163 (354)
T ss_dssp CCHHHHHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT---
T ss_pred cchHHHHHHHHHHHHhcccccc----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC---
Confidence 0111112222222222222221 1 5566 788999999999999 999999999999988642
Q ss_pred CCeEEEEEecCCcHHHHhhcCeE
Q 044030 228 IGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 228 ~g~tii~~tH~~~~~i~~~~D~v 250 (449)
+.++|+++|++......+.+|.
T Consensus 164 -~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 164 -NIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp -TEEEEEEESCSCSSCHHHHTTS
T ss_pred -CCEEEEEeCCHHHHHHHHHhhc
Confidence 4599999999754323333443
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.37 E-value=2.3e-12 Score=131.87 Aligned_cols=161 Identities=14% Similarity=0.209 Sum_probs=92.1
Q ss_pred eeeee-eEEEecCeEEEEECCCCCcHHHHHHHH--HcCCCCCC--CceeEEEECCEecccccCcEEEEcCCCCCCCCCCH
Q 044030 58 ILEDL-TGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDT--RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 58 iL~~v-s~~i~~Ge~~~IlGpnGaGKSTLL~~l--~G~~~~~~--~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv 132 (449)
-|+.+ .+-|++|++++|+||||||||||++.| ++..++.. ...+.++++++.. + ..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~---------------~----~~ 226 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT---------------F----RP 226 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------C----CH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc---------------c----CH
Confidence 44443 367999999999999999999999944 56554310 0133566655421 0 01
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh-HHHHHHHHHHHHH--hCCCEEEEeCCCCCCCH
Q 044030 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG-GQKRRVSISIEIL--TRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 133 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg-GerqRv~ia~aL~--~~P~llllDEPtsgLD~ 209 (449)
........++ ++... .+++.+-+ ....++ .+.+.+.-+.+++ .+|+++++|||++.+|+
T Consensus 227 ~rl~~~a~~~----gl~~~-------~vleni~~-------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 227 VRLVSIAQRF----GLDPD-------DALNNVAY-------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHT----TCCHH-------HHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHc----CCChH-------hHhhcEEE-------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 1000011111 01100 11111111 011122 1223333333333 47999999999999997
Q ss_pred HHH------------HHHHHHHHHHHhhcCCCeEEEEEecCCc------------------HHHHhhcCeEEEeeCCe
Q 044030 210 AAS------------YYVMSRIAKLGQRDGIGRTIIASIHQPS------------------SEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 210 ~~~------------~~i~~~l~~l~~~~g~g~tii~~tH~~~------------------~~i~~~~D~v~~l~~G~ 257 (449)
... ..+++.|++++++.|. |||+++|... ..+.+.+|.++.|+.++
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gi--tVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGV--AVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCC--EEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCC--EEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 543 6788999999988776 9999999821 23467789999998764
No 140
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.37 E-value=1.1e-15 Score=138.65 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=84.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-cc------c-c-CcEE----EEcCCCCCCCCCCHHHHH
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-AL------A-Y-GTSA----YVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~-~~------~-~-~~i~----yv~Q~~~l~~~lTv~e~l 136 (449)
++++|+|+||||||||+++|+|++.+.....|.|.++|.+. +. . + +.++ +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999999876322379999999762 11 1 1 2355 788876654 000
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHH-cCCchhhCccC-CCCChHHHHHHHHHHHHHhCCCEE-------EEeCCCCC-
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIRE-MGLQDAMNTRI-RRLSGGQKRRVSISIEILTRPKLL-------FLDEPTSG- 206 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~~-~~LSgGerqRv~ia~aL~~~P~ll-------llDEPtsg- 206 (449)
. . .+....+.++++. +. -.|+.+ .+|||||+||++||||++.+|++. .-|.|..+
T Consensus 77 --------~---~-~~~~a~l~~~i~~~l~---g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~ 141 (171)
T 2f1r_A 77 --------V---S-EEEGNDLDWIYERYLS---DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGH 141 (171)
T ss_dssp --------C---C-HHHHTCHHHHHHHHTT---TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSS
T ss_pred --------C---C-hhhhhCHHHHHHhhCC---CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccC
Confidence 0 0 1111134455555 42 123333 359999999999999999999873 23555322
Q ss_pred --CCHHHHHHHHHHHHHHHhhc
Q 044030 207 --LDSAASYYVMSRIAKLGQRD 226 (449)
Q Consensus 207 --LD~~~~~~i~~~l~~l~~~~ 226 (449)
+|......+.+.+.+...+.
T Consensus 142 ~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 142 KWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccHHHHHHHHHHHHhcc
Confidence 34455677888887766553
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.37 E-value=8.8e-17 Score=169.58 Aligned_cols=173 Identities=15% Similarity=0.134 Sum_probs=108.5
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-cccc-cCcEEEEcCCCCC-------
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-KALA-YGTSAYVTQDDTL------- 126 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-~~~~-~~~i~yv~Q~~~l------- 126 (449)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|+++|.. .... ...++++.|....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999774 8999999864 2211 2345566554332
Q ss_pred ---------------CCCCCHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHcC-----Cch----hhC---ccCCCCC
Q 044030 127 ---------------ITTLTVKEAVYYSAQLQLPDT-MPKSDKKERAEVTIREMG-----LQD----AMN---TRIRRLS 178 (449)
Q Consensus 127 ---------------~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lg-----L~~----~~~---~~~~~LS 178 (449)
+..++..|++.+...+..+.. ++. .....+.++++.+. +.. ..+ .....+|
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 234455554433322211100 000 00001223333332 221 122 2335689
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEE--EecCCcHHHHhhcC
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIA--SIHQPSSEVFQLFH 248 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~--~tH~~~~~i~~~~D 248 (449)
+||+||++++. + | |+|||+.....+++.|.++.+ .+. |+++ +||++ .++...|+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~--tii~~~~sH~l-~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KED--KHIEVSMPKKL-EKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTT--EEEECSCCTHH-HHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCC--EEEEcccHHHH-HHHHHHcC
Confidence 99999877652 2 7 999999888777777777753 344 8875 89995 56776664
No 142
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.31 E-value=7.8e-14 Score=137.58 Aligned_cols=105 Identities=13% Similarity=0.245 Sum_probs=72.7
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecccc-----cCcEEEEcCCCC-----------
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI---NGHKKALA-----YGTSAYVTQDDT----------- 125 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~---~g~~~~~~-----~~~i~yv~Q~~~----------- 125 (449)
++.+|++++|+||||||||||||+|+|+..|. +|+|.+ +|++.... .+.++||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 45579999999999999999999999998774 899999 88764321 135799999974
Q ss_pred -----CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCCh
Q 044030 126 -----LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSG 179 (449)
Q Consensus 126 -----l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg 179 (449)
++|++|+ ||+.|.. +. ...+...++.++++.+||. +..+.+++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5888999 9987753 21 1122345688999999995 788888888885
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.30 E-value=7.7e-15 Score=146.70 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=111.4
Q ss_pred cccceeeeeeEEEecC-------eEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecc-----cccCcEEEE
Q 044030 54 GSSSILEDLTGYAKPG-------HLLAIMGPSGSGKTTLLDALAGRLGSD-TRQTGKILINGHKKA-----LAYGTSAYV 120 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~G-------e~~~IlGpnGaGKSTLL~~l~G~~~~~-~~~~G~I~~~g~~~~-----~~~~~i~yv 120 (449)
+...+++++++.+++| +.++|.||||+|||||+++|+|.+... .+.+|.+..++.+.. .....+.|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 4567899999999887 899999999999999999999986221 113666665554321 123468999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEE
Q 044030 121 TQDDTLITTLTVKEAVYYSAQLQLPDT-MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLF 199 (449)
Q Consensus 121 ~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~lll 199 (449)
+|.+.+.+ ++.|++..........- .......+.+...+..+++.. +.+.+..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~----------- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII----------- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE-----------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce-----------
Confidence 99887765 78888865443221000 001122234555566677755 7788899999999998655
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 200 LDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 200 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
.+||+.+...+.++|++.++..+ ++|++ +.+..++++
T Consensus 175 -----~~Ld~~~~~~l~~iL~~~~~~~~-------~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 175 -----LELDFYTVKELKEIIKRAASLMD-------VEIED-AAAEMIAKR 211 (334)
T ss_dssp -----EECCCCCHHHHHHHHHHHHHHTT-------CCBCH-HHHHHHHHT
T ss_pred -----eeCCCCCHHHHHHHHHHHHHHcC-------CCcCH-HHHHHHHHh
Confidence 78899999999999999886543 24663 445555554
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.30 E-value=3e-15 Score=152.67 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=118.8
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCC---------CCCCceeEEEECCEeccc------ccC---cEEEEcCCCCC
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLG---------SDTRQTGKILINGHKKAL------AYG---TSAYVTQDDTL 126 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~---------~~~~~~G~I~~~g~~~~~------~~~---~i~yv~Q~~~l 126 (449)
.+++|..++|+|+||||||||+|+|+|... .-.+.+|.|.++|..... ..+ ...++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999321 012358999999843210 111 13477788888
Q ss_pred CCCCCHHHHH--HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC--CEEEEeC
Q 044030 127 ITTLTVKEAV--YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP--KLLFLDE 202 (449)
Q Consensus 127 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P--~llllDE 202 (449)
++..+..|++ .|...++. ++.++..++.. .+..+..+||+. +| ++.++||
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhcc--ccceeeeecccc------------Ccchhhhhchh
Confidence 8877776655 34333321 11111112221 144555577653 89 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH-HhhcCCCeEEEEEecCCcHHHHhhcCeEE-EeeCC-eEEEecChh
Q 044030 203 PTSGLDSAASYYVMSRIAKL-GQRDGIGRTIIASIHQPSSEVFQLFHNLC-LLSAG-QTVYFGPAT 265 (449)
Q Consensus 203 PtsgLD~~~~~~i~~~l~~l-~~~~g~g~tii~~tH~~~~~i~~~~D~v~-~l~~G-~iv~~g~~~ 265 (449)
|+.++|+......++.+... + ..|. ||+ +|+. .++.++||++. +|.+| ++++.|+.+
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~-~~g~--ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITS-RGAN--TLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-CSSC--SSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-hcCC--ccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999999999999988 5 3443 764 9995 68899999999 99999 998887654
No 145
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.28 E-value=1.1e-14 Score=135.64 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=87.8
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP 145 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~ 145 (449)
.++|++++|+||||||||||+++|+|++++. | ..+++|++++..++. +..+++......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~--- 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRK--- 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGT---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccC---
Confidence 5789999999999999999999999998642 2 123445544433321 111211100000
Q ss_pred CCCCHHHHHHHHHHHHHHcC----CchhhCccCCCCChHHHHHHHHH-HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044030 146 DTMPKSDKKERAEVTIREMG----LQDAMNTRIRRLSGGQKRRVSIS-IEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220 (449)
Q Consensus 146 ~~~~~~~~~~~v~~~l~~lg----L~~~~~~~~~~LSgGerqRv~ia-~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~ 220 (449)
............+.+..+. +.-..-.....+|+||+||++++ ++++.++.++++|||.. ..+.
T Consensus 78 -~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~ 145 (208)
T 3c8u_A 78 -GAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLT 145 (208)
T ss_dssp -TSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGG
T ss_pred -CCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHH
Confidence 0111001111222333321 11111122246799999999997 77888888888888731 1112
Q ss_pred HHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHH
Q 044030 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271 (449)
Q Consensus 221 ~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f 271 (449)
.+. . .+|++.+.....+.+.+.|. +..|. +.+++...+
T Consensus 146 ~~~----d--~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 146 AIW----D--VSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp GTC----S--EEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred Hhc----C--EEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 222 2 67778887544466777763 34554 555555433
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.24 E-value=4.7e-13 Score=132.22 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=69.9
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeccccc---C-cEEEEcCCCCCCC----CCCH
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI---NGHKKALAY---G-TSAYVTQDDTLIT----TLTV 132 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~---~g~~~~~~~---~-~i~yv~Q~~~l~~----~lTv 132 (449)
+++.+|++++|+||||||||||+|+|+|...+ .+|+|.+ +|+..+... + .++|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~---~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc---cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 45678999999999999999999999999876 4899998 776543211 1 1699999987755 6899
Q ss_pred HHHHH--HHH------hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH
Q 044030 133 KEAVY--YSA------QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 133 ~e~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 184 (449)
|++. |.. .++........+....+.++++.++|.+........++.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 8883 321 11111111112233468899999999876656666777787763
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.22 E-value=1.4e-15 Score=148.21 Aligned_cols=141 Identities=19% Similarity=0.220 Sum_probs=96.8
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-----cCcEEEEcCCC-CCCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-----YGTSAYVTQDD-TLIT 128 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-----~~~i~yv~Q~~-~l~~ 128 (449)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|.. ...|
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 456899999999999 999999999999999999998643 7899998654211 12466777764 4455
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC---
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS--- 205 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts--- 205 (449)
.+++.|++.+....+ .. .... .+....++.+..|||||+||+.|++|+.++|++| |||+.
T Consensus 105 ~i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~g 167 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR-------SD--RETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPG 167 (274)
T ss_dssp EEEEEETCTTTCC------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTT
T ss_pred CeEeeehhhhhhccc-------CC--Ccch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcc
Confidence 556666654321110 00 0000 1334556677889999999999999999999986 88864
Q ss_pred ---------CCCHHHHHHHHHHH
Q 044030 206 ---------GLDSAASYYVMSRI 219 (449)
Q Consensus 206 ---------gLD~~~~~~i~~~l 219 (449)
-.|...+..|++.+
T Consensus 168 Rfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 168 RLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHH
Confidence 23566666665543
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.16 E-value=1.6e-10 Score=108.88 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=47.2
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH-------HHhhcCeEEEeeC
Q 044030 193 TRPKLLFLDEPTSGL--DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE-------VFQLFHNLCLLSA 255 (449)
Q Consensus 193 ~~P~llllDEPtsgL--D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~-------i~~~~D~v~~l~~ 255 (449)
.+|+++++|+|++.+ |+.....++..|.+++++.|. |||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGC--TSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTC--EEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCC--eEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 665566777777777766666 999999986431 4678999999974
No 149
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.16 E-value=2.8e-13 Score=133.93 Aligned_cols=138 Identities=12% Similarity=0.145 Sum_probs=95.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEE-------------------ecCeEEEEECCCCCcHHHHHHHHHcCCC--C
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYA-------------------KPGHLLAIMGPSGSGKTTLLDALAGRLG--S 95 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~ 95 (449)
.|+++||++.| .++++++|+.+ .+|+++||+||||||||||+++|+|++. |
T Consensus 37 ~i~~~~v~~~y--------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 37 DLSLEEVAEIY--------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp TCCHHHHHHTH--------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred ccchHhHHHHH--------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 36788888762 25899999988 9999999999999999999999999876 5
Q ss_pred CCCceeEEEE---CCEeccc-ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhC
Q 044030 96 DTRQTGKILI---NGHKKAL-AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN 171 (449)
Q Consensus 96 ~~~~~G~I~~---~g~~~~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 171 (449)
.+|+|.+ +|..... ..+.++++ |...+++.+|+.+++.+...++.... .+ .
T Consensus 109 ---~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~i----~ 163 (308)
T 1sq5_A 109 ---EHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP-----------------NV----T 163 (308)
T ss_dssp ---TCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS-----------------CE----E
T ss_pred ---CCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC-----------------ce----e
Confidence 4899999 8865321 12346788 87778888999999988766542110 00 0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 172 ~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
.+....+.+ +|+..+.+.+.+|+++|+|.|....+.
T Consensus 164 ~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 164 APVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 111111111 222222234567899999999988774
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.15 E-value=4.6e-11 Score=124.21 Aligned_cols=175 Identities=11% Similarity=0.135 Sum_probs=115.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG-KILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G-~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
+...|+++.+-+++|+++.|.|+||+|||||+..|++...+. .| .| .|+.-+ ++..
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~V--------------l~~s~E------~s~~ 245 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENV--------------AIFSLE------MSAQ 245 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCE--------------EEEESS------SCHH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcE--------------EEEECC------CCHH
Confidence 345789998889999999999999999999999998865321 23 23 333221 2222
Q ss_pred HHHHH--HHh-------ccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH--hCCCEEEEeC
Q 044030 134 EAVYY--SAQ-------LQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL--TRPKLLFLDE 202 (449)
Q Consensus 134 e~l~~--~~~-------~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~llllDE 202 (449)
+...- +.. ++.+ .+.. +...++.+.++.++..+..-....++|.+|.+ +.++.++ .+|+++++|+
T Consensus 246 ~l~~r~~~~~~~~~~~~l~~g-~l~~-~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~ 321 (454)
T 2r6a_A 246 QLVMRMLCAEGNINAQNLRTG-KLTP-EDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDY 321 (454)
T ss_dssp HHHHHHHHHHHTCCHHHHHTS-CCCH-HHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEEC
T ss_pred HHHHHHHHHHcCCCHHHHhcC-CCCH-HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcc
Confidence 21110 000 1100 1222 22344555566554433333334689999987 5667776 6899999999
Q ss_pred CCCCCC--------HHHHHHHHHHHHHHHhhcCCCeEEEEEec---------C--Cc-------HHHHhhcCeEEEeeCC
Q 044030 203 PTSGLD--------SAASYYVMSRIAKLGQRDGIGRTIIASIH---------Q--PS-------SEVFQLFHNLCLLSAG 256 (449)
Q Consensus 203 PtsgLD--------~~~~~~i~~~l~~l~~~~g~g~tii~~tH---------~--~~-------~~i~~~~D~v~~l~~G 256 (449)
++...+ ......+.+.|+.++++.|. +||+++| + |. ..+.+.+|.|++|+.+
T Consensus 322 l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i--~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 322 LQLIQGSGRSKENRQQEVSEISRSLKALARELEV--PVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp GGGSCCSCC----CHHHHHHHHHHHHHHHHHHTC--CEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred HHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC--eEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 998774 23446788889999988776 9999999 2 32 1467889999999877
Q ss_pred eE
Q 044030 257 QT 258 (449)
Q Consensus 257 ~i 258 (449)
+.
T Consensus 400 ~~ 401 (454)
T 2r6a_A 400 DY 401 (454)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 151
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.13 E-value=9.2e-15 Score=135.35 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=42.8
Q ss_pred HHH-HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 187 ISI-EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 187 ia~-aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
.++ +++.+|++++|||||+++|..+...|.+.|....++ +...|.+ ..||.++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-------~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-------MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-------TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-------HHHhhcc-----CCceEEEECCC
Confidence 445 677788888889999999999999999999887643 1234631 56899888763
No 152
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.09 E-value=1e-14 Score=137.80 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=22.9
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH-cCCC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA-GRLG 94 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~-G~~~ 94 (449)
.+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999 9864
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.09 E-value=3.6e-11 Score=118.74 Aligned_cols=114 Identities=16% Similarity=0.255 Sum_probs=81.1
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSA 140 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 140 (449)
.+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. + . ...
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~---r-~-------------~a~------- 148 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF---R-A-------------AAI------- 148 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT---C-H-------------HHH-------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc---c-H-------------HHH-------
Confidence 355667899999999999999999999999988652 567776654321 0 0 001
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHH---HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Q 044030 141 QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRV---SISIEILTRPKLLFLDEPTSGLDSAASYYVMS 217 (449)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv---~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~ 217 (449)
+....+.+.+|+.. +...|||+.+++ ++++++..+|+++|+|||.. ......+++
T Consensus 149 --------------eqL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~ 206 (306)
T 1vma_A 149 --------------EQLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLME 206 (306)
T ss_dssp --------------HHHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHH
T ss_pred --------------HHHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHH
Confidence 11234455566643 345689999999 89999999999999999974 344556666
Q ss_pred HHHHHH
Q 044030 218 RIAKLG 223 (449)
Q Consensus 218 ~l~~l~ 223 (449)
.|+.+.
T Consensus 207 eL~~l~ 212 (306)
T 1vma_A 207 ELRKVH 212 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.04 E-value=7.4e-10 Score=108.78 Aligned_cols=119 Identities=19% Similarity=0.105 Sum_probs=82.8
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHH
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYS 139 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 139 (449)
++++++ +|++++|+|+||+||||++..|+|.+.+ ..|+|.+.+.+.... + ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~~d~~~~----~------------~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQRP----A------------AR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEECCSSCH----H------------HH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEecCCcccH----h------------HH-HHH---
Confidence 788888 9999999999999999999999998865 257787766542110 0 00 000
Q ss_pred HhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHHHHHHH
Q 044030 140 AQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP-TSGLDSAASYYVMSR 218 (449)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP-tsgLD~~~~~~i~~~ 218 (449)
..+.+..|+.-.... ..-+-.+.+|.+|+.+...+++++|+||| ++++|......+.+.
T Consensus 146 ------------------~~~~~~~~l~~~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~ 205 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARL 205 (295)
T ss_dssp ------------------HHHHHHHTCCEEECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHH
T ss_pred ------------------HHhcccCCeEEEEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHH
Confidence 012233444322110 11233455788999988899999999999 999999888888887
Q ss_pred HHHHH
Q 044030 219 IAKLG 223 (449)
Q Consensus 219 l~~l~ 223 (449)
.+.+.
T Consensus 206 ~~~~~ 210 (295)
T 1ls1_A 206 KEVLG 210 (295)
T ss_dssp HHHHC
T ss_pred hhhcC
Confidence 77664
No 155
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.03 E-value=3.7e-12 Score=137.11 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=103.8
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCC---------
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDD--------- 124 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~--------- 124 (449)
|...+++++++.+.+|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.......++|+|+..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHH
Confidence 5677999999999999999999999999999999999998763 34888888876544345688887653
Q ss_pred -------------CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 125 -------------TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 125 -------------~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+..+++.+|+.....-..+...- .+ .....-+.+|.-+......+++|+|++|++..+...
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v-~~---~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~ 198 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI-DA---TGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIH 198 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEE-EC---TTCCHHHHHCEECCCCC----CCCCGGGGEECCHHH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEE-Ec---CCCCHHhcCceEEechhhcCCccccccccccCceee
Confidence 1112222222221100000000000 00 000111223332222233478999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAK 221 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~ 221 (449)
..++.+||+||... |++..+..+.+.|.+
T Consensus 199 ~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 199 RAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999988 899999888888874
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.03 E-value=6.4e-11 Score=123.50 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=47.0
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
..+|+|+||++++ ++++|+|||||||||||++|+|+++|. +|+|.++|.+.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 3589999999999 999999999999999999999999874 89999999754
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.01 E-value=4.8e-10 Score=110.18 Aligned_cols=144 Identities=15% Similarity=0.216 Sum_probs=89.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD 146 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 146 (449)
++|++++|+|||||||||+++.|++.+.+. +| +.+.++.++.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 479999999999999999999999987542 34 23566766652 2356666654322
Q ss_pred CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc
Q 044030 147 TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226 (449)
Q Consensus 147 ~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 226 (449)
.+|+.... ..+. ..-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+....
T Consensus 159 ----------------~~gl~~~~-----~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~ 212 (296)
T 2px0_A 159 ----------------LLQAPLEV-----CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFES 212 (296)
T ss_dssp ----------------TTTCCCCB-----CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCT
T ss_pred ----------------hcCCCeEe-----cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcC
Confidence 12221110 0122 22344555 45999999999 99999876655554443332100
Q ss_pred CCCeEEEE-EecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 227 GIGRTIIA-SIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 227 g~g~tii~-~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
..+.++++ ++|.. .++.+.++++..+..+.++..
T Consensus 213 ~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 213 SIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp TEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred CCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 10224444 48874 578888888776777777764
No 158
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.00 E-value=7.3e-12 Score=115.14 Aligned_cols=67 Identities=27% Similarity=0.348 Sum_probs=45.7
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ....++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999852 35555543211 123578999987666655555443
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.00 E-value=4.2e-10 Score=113.13 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=90.3
Q ss_pred ceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 57 SILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 57 ~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
.-|+.+- +-+++|+++.|.||||||||||+..++...... .| .+.|+.-+..+-+
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~--------------~vlyi~~E~~~~~------ 103 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GG--------------IAAFIDAEHALDP------ 103 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--------------CEEEEESSCCCCH------
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC--------------eEEEEECCCCcCH------
Confidence 3455543 478999999999999999999988887643210 11 2345444322110
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC--CCEEEEeCCCCCC-----
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR--PKLLFLDEPTSGL----- 207 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~--P~llllDEPtsgL----- 207 (449)
. ++.+ +|+....-......+. .+-+.++++++.+ |+++++|||++.+
T Consensus 104 ~--~a~~----------------------lG~~~~~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~ 157 (349)
T 2zr9_A 104 E--YAKK----------------------LGVDTDSLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEI 157 (349)
T ss_dssp H--HHHH----------------------TTCCGGGCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHH
T ss_pred H--HHHH----------------------cCCCHHHeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhh
Confidence 0 1111 1111000000011222 2345677888755 9999999999988
Q ss_pred -----CH---HHHHHHHHHHHHH---HhhcCCCeEEEEEecCCcH---------------HHHhhcCeEEEeeCCeEEEe
Q 044030 208 -----DS---AASYYVMSRIAKL---GQRDGIGRTIIASIHQPSS---------------EVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 208 -----D~---~~~~~i~~~l~~l---~~~~g~g~tii~~tH~~~~---------------~i~~~~D~v~~l~~G~iv~~ 261 (449)
|+ ..+..+.+.++++ +++.|. |||+++|.... .+..+||.++.++.++++..
T Consensus 158 ~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~--tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~ 235 (349)
T 2zr9_A 158 EGEMGDSHVGLQARLMSQALRKMTGALNNSGT--TAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD 235 (349)
T ss_dssp TTC----CCCHHHHHHHHHHHHHHHHHHHHTC--EEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHhCC--EEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeec
Confidence 33 2222344444444 456666 99999996431 25678999999988776555
Q ss_pred cC
Q 044030 262 GP 263 (449)
Q Consensus 262 g~ 263 (449)
|+
T Consensus 236 g~ 237 (349)
T 2zr9_A 236 GT 237 (349)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.99 E-value=1.2e-11 Score=129.87 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=97.2
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHc-C-CCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCC--CHHHHH
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAG-R-LGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTL--TVKEAV 136 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G-~-~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~l--Tv~e~l 136 (449)
.+++++.++..++|.|++||||||++++|.. + ... ..|++.+.+.+.+.. -++....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~---~p~~v~l~liDpK~~------el~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA---QPEDVRFIMIDPKML------ELSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC---CTTTEEEEEECCSSS------GGGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC---CCceEEEEEECCchh------hhhhhccCCcccceeecCH
Confidence 5778889999999999999999999999875 2 222 236666555443210 00110111111 121222
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc---cCCCCChHHHHHH----------HHHHHHHhCCC-EEEEeC
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT---RIRRLSGGQKRRV----------SISIEILTRPK-LLFLDE 202 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---~~~~LSgGerqRv----------~ia~aL~~~P~-llllDE 202 (449)
..+.... .....+.+++. +++...|+.+..+. ....+|+||+|+. .+++++...|. ++++||
T Consensus 230 ~~a~~~L---~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE 305 (512)
T 2ius_A 230 KDAANAL---RWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDE 305 (512)
T ss_dssp HHHHHHH---HHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEET
T ss_pred HHHHHHH---HHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeC
Confidence 1111110 01123444553 67888888765432 2246788887752 34556677887 789999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh---hcCCCeEEEEEecCCc
Q 044030 203 PTSGLDSAASYYVMSRIAKLGQ---RDGIGRTIIASIHQPS 240 (449)
Q Consensus 203 PtsgLD~~~~~~i~~~l~~l~~---~~g~g~tii~~tH~~~ 240 (449)
+++-+|.. ...+.+.|.++++ .. |.++|++||+|.
T Consensus 306 ~~~ll~~~-~~~~~~~l~~Lar~gRa~--GI~LIlaTQrp~ 343 (512)
T 2ius_A 306 FADLMMTV-GKKVEELIARLAQKARAA--GIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHCGGG--TEEEEEEESCCC
T ss_pred HHHHHhhh-hHHHHHHHHHHHHHhhhC--CcEEEEEecCCc
Confidence 99988843 3455566665543 33 459999999986
No 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.91 E-value=4.5e-10 Score=102.43 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l 222 (449)
+.+.+|++++.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3477899999999999999 9999999999999988653
No 162
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.87 E-value=1.1e-12 Score=127.35 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=82.7
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCC-CCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDT-LIT 128 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~-l~~ 128 (449)
...+++++++.+++| ++|+||||||||||+++|++... .|.|.+++.+... ..+.+++++|... ..+
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 133 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 346899999999999 99999999999999999999763 6889998864311 1123567777643 456
Q ss_pred CCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 129 TLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
.+++.|++......+.. ......+..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 134 ~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEEETHHHHHCC--------CHHHHHHHHHHH-------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred cEEehhhhHhhhcccccccCCcchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEecCCchh
Confidence 67777777433221100 0001112222333332 35899999999999999999975
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.86 E-value=5.9e-13 Score=127.26 Aligned_cols=127 Identities=16% Similarity=0.223 Sum_probs=83.6
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCC-CCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDT-LIT 128 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~-l~~ 128 (449)
...+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.+... ..+.+++++|... ..+
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 346899999999999 99999999999999999999763 5889998864311 1123566777643 456
Q ss_pred CCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC
Q 044030 129 TLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP 203 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP 203 (449)
.+++.|++......+.. ......+..+.+.+++ ..|||||+||+.+++++..+|++ +|++
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 66777777433211100 0001122223333333 35789999999999999999976 4543
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.72 E-value=3.4e-10 Score=107.00 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=40.2
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
..|+++|++.. . +. ++++.+ ++++|+|||||||||||++|+|++.|. +|+|.++|.+.
T Consensus 8 ~~l~l~~~~~~-~-----~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~ 65 (227)
T 1qhl_A 8 RSLTLINWNGF-F-----AR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEEETTE-E-----EE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC-------
T ss_pred eEEEEEeeecc-c-----CC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEc
Confidence 35677777543 1 11 456666 899999999999999999999999774 89999998754
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.67 E-value=9.6e-09 Score=93.84 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~ 223 (449)
...|++++.+|++.++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
No 166
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.66 E-value=1.7e-11 Score=124.48 Aligned_cols=139 Identities=15% Similarity=0.077 Sum_probs=83.4
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCC-CCCCCCHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDT-LITTLTVKE 134 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~-l~~~lTv~e 134 (449)
..+|+++|+.+++|++++|+||||||||||+++|+|.. .|.+..-+.+.......+++++|... ++.+++...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHH
Confidence 46899999999999999999999999999999999953 57776522111110112556666543 233332211
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHH---cCCc-------------hhhCccCCCCChHHHHHHHHHHHHHhCCCEE
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIRE---MGLQ-------------DAMNTRIRRLSGGQKRRVSISIEILTRPKLL 198 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~-------------~~~~~~~~~LSgGerqRv~ia~aL~~~P~ll 198 (449)
.+ ...+. .. ........+...++- +.++ ...+.....+++|+++|+..+.+++..|+++
T Consensus 230 ~~--~r~l~--~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE--SRDLP--SG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT--TTTCC--CC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH--Hhhcc--cc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 10 00000 00 000001112222320 0011 1234556789999999999888888999988
Q ss_pred E-EeCCCC
Q 044030 199 F-LDEPTS 205 (449)
Q Consensus 199 l-lDEPts 205 (449)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999987
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.62 E-value=3.5e-09 Score=106.97 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=86.8
Q ss_pred cCeE-EEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH---H
Q 044030 68 PGHL-LAIMGPSGSGKTTLLDALAGRLGSD--------TRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE---A 135 (449)
Q Consensus 68 ~Ge~-~~IlGpnGaGKSTLL~~l~G~~~~~--------~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e---~ 135 (449)
.|-. ++|+|++|||||||+|.|+|..... .+..|.|.++|.+.... ...|++.+.+. ..|.. .
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~-DT~G~i~~lp~----~lve~f~~t 251 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV-DTVGFIRGIPP----QIVDAFFVT 251 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE-ECCCBCSSCCG----GGHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE-eCCCchhcCCH----HHHHHHHHH
Confidence 3444 9999999999999999999976421 03578999998653211 12344433221 11211 1
Q ss_pred HHHHHh----ccC-CCCCCH---HHHHHHHHHHHHHcCCchhh----CccCCCCChHHHHHHHHH----HHH-HhCCCEE
Q 044030 136 VYYSAQ----LQL-PDTMPK---SDKKERAEVTIREMGLQDAM----NTRIRRLSGGQKRRVSIS----IEI-LTRPKLL 198 (449)
Q Consensus 136 l~~~~~----~~~-~~~~~~---~~~~~~v~~~l~~lgL~~~~----~~~~~~LSgGerqRv~ia----~aL-~~~P~ll 198 (449)
+..... +.. ...... .+..+.+.++++.+++.+.. ..++..+|+|+++|+.++ +++ ..+|++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 111000 000 000111 12223456778887765432 344567898898988887 444 334444
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhh
Q 044030 199 FLDEPTSGLDSAASYYVMSRIAKLGQR 225 (449)
Q Consensus 199 llDEPtsgLD~~~~~~i~~~l~~l~~~ 225 (449)
+|+|++|......+.+.|.++...
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHhcc
Confidence 899999999999999999887644
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.60 E-value=1.8e-08 Score=101.28 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=31.6
Q ss_pred ceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 57 SILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 57 ~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.-|+.+- +=+++|+++.|.||||||||||+..+++...
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455543 3799999999999999999999999998653
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.57 E-value=1.5e-09 Score=99.81 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=32.3
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 3566799999999999999999999999964 7888888654
No 170
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.53 E-value=7.4e-08 Score=96.80 Aligned_cols=125 Identities=12% Similarity=0.100 Sum_probs=79.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT 147 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 147 (449)
..-.++|+|+||+|||||++.|+|.... .| +.+.......++.+.++.. .+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~----~~-----~~~~~t~~~~~~~~~~~~~---------------~~----- 216 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE----IA-----SYPFTTRGINVGQFEDGYF---------------RY----- 216 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE----EE-----CCTTCSSCEEEEEEEETTE---------------EE-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc----cC-----CCCCeeeceeEEEEEecCc---------------eE-----
Confidence 4457999999999999999999986411 11 1111111112333333211 00
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhhc
Q 044030 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLD-EPTSGLDSAASYYVMSRIAKLGQRD 226 (449)
Q Consensus 148 ~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllD-EPtsgLD~~~~~~i~~~l~~l~~~~ 226 (449)
..++.....+..+..+|+|++|++. +.+...++-++++| +|.+|+|......+++.+.....
T Consensus 217 --------------~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-- 279 (357)
T 2e87_A 217 --------------QIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-- 279 (357)
T ss_dssp --------------EEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--
T ss_pred --------------EEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--
Confidence 0011112223456678999998876 55556777889999 99999999998888888777642
Q ss_pred CCCeEEEEEe--cCCc
Q 044030 227 GIGRTIIASI--HQPS 240 (449)
Q Consensus 227 g~g~tii~~t--H~~~ 240 (449)
+. ++|++. ||..
T Consensus 280 ~~--piilV~NK~Dl~ 293 (357)
T 2e87_A 280 DL--PFLVVINKIDVA 293 (357)
T ss_dssp TS--CEEEEECCTTTC
T ss_pred CC--CEEEEEECcccC
Confidence 34 788888 7753
No 171
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.53 E-value=7.7e-08 Score=100.35 Aligned_cols=113 Identities=22% Similarity=0.400 Sum_probs=73.8
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
..++++++.+++| +.|.||+|+|||||+++|++..... -+.+++.+ +. .
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~----------------~~-~------- 87 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSD----------------FV-E------- 87 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGG----------------TT-T-------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHH----------------HH-H-------
Confidence 3566777778887 8899999999999999999854210 01111100 00 0
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC----------CCC
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP----------TSG 206 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP----------tsg 206 (449)
.. ++ .|+++.|..++.|....|.+||+||+ ++|
T Consensus 88 -----~~------------------------------~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g 130 (476)
T 2ce7_A 88 -----LF------------------------------VG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130 (476)
T ss_dssp -----CC------------------------------TT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-------
T ss_pred -----HH------------------------------hc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCc
Confidence 00 00 26778888899999999999999999 346
Q ss_pred CCHHHHHHHHHHHHHHH---hhcCCCeEEEEEecCC
Q 044030 207 LDSAASYYVMSRIAKLG---QRDGIGRTIIASIHQP 239 (449)
Q Consensus 207 LD~~~~~~i~~~l~~l~---~~~g~g~tii~~tH~~ 239 (449)
.|......+.+++..+- ... +..||.+||+|
T Consensus 131 ~~~~~~~~l~~LL~~ld~~~~~~--~viVIaaTn~~ 164 (476)
T 2ce7_A 131 GHDEREQTLNQLLVEMDGFDSKE--GIIVMAATNRP 164 (476)
T ss_dssp --CHHHHHHHHHHHHHHHSCGGG--TEEEEEEESCG
T ss_pred CcHHHHHHHHHHHHHHhccCCCC--CEEEEEecCCh
Confidence 77766666666666663 223 45899999996
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.49 E-value=1e-07 Score=95.18 Aligned_cols=132 Identities=18% Similarity=0.178 Sum_probs=87.6
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
..-|+.+..-+.+|+++.|.|++|+|||||+..++..... .| ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEES------SSCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeC------CCCHHHH
Confidence 4567777778999999999999999999999888764311 11 12344331 2333332
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 044030 136 VYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i 215 (449)
. .+.......+++.+..+ +.||.++.+|+..|...+.++++++.|+|... ...|
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i 143 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQI 143 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHH
T ss_pred H------------------HHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHH
Confidence 2 22222222223333322 47999999999999999999999999998654 3367
Q ss_pred HHHHHHHHhhcCCCeEEEEEec
Q 044030 216 MSRIAKLGQRDGIGRTIIASIH 237 (449)
Q Consensus 216 ~~~l~~l~~~~g~g~tii~~tH 237 (449)
...++++.++.| |..+|++-|
T Consensus 144 ~~~ir~l~~~~g-g~~lIVIDy 164 (338)
T 4a1f_A 144 RLQLRKLKSQHK-ELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHCT-TEEEEEEEE
T ss_pred HHHHHHHHHhcC-CCCEEEEec
Confidence 777777776652 237777754
No 173
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.46 E-value=2e-07 Score=103.00 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=59.7
Q ss_pred CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCCCeEEEEE-ecCCcHHHHhhcC
Q 044030 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS-GLDSAASYYVMSRIAKLGQRDGIGRTIIAS-IHQPSSEVFQLFH 248 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~g~tii~~-tH~~~~~i~~~~D 248 (449)
+..+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+..... . ..+|++| ||++ ..+.++++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~--~~iIl~SAT~~~-~~l~~~~~ 260 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-D--LKIIIMSATLDA-EKFQRYFN 260 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-T--CEEEEEESCSCC-HHHHHHTT
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-C--ceEEEEeccccH-HHHHHHhc
Confidence 45567789999999999999999999999999996 9998877777776665542 2 3477775 9986 56777777
Q ss_pred eE
Q 044030 249 NL 250 (449)
Q Consensus 249 ~v 250 (449)
..
T Consensus 261 ~~ 262 (773)
T 2xau_A 261 DA 262 (773)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 174
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.46 E-value=1.1e-07 Score=85.56 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=34.1
Q ss_pred cee--eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 57 SIL--EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 57 ~iL--~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
..+ +++++.+.+| +++|+||||||||||+++|++.+.+
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 356 7899999999 9999999999999999999998754
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.44 E-value=1.4e-08 Score=97.39 Aligned_cols=52 Identities=31% Similarity=0.406 Sum_probs=36.2
Q ss_pred eEEEEee-EEEEeecCcccccceeeeeeEEEec---CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 37 FLTWKDL-TVTIVSNGKKGSSSILEDLTGYAKP---GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 37 ~l~~~nl-s~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++++|+ ++.| . +...+|+|+||++++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~-~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPF-D----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEe-c----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 9873 1 346799999999999 9999999999999999999999865
No 176
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.32 E-value=1.2e-07 Score=86.10 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=24.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998753
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.31 E-value=1.9e-09 Score=113.11 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=83.9
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-----cCcEEEEcCCCC-CCCC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-----YGTSAYVTQDDT-LITT 129 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-----~~~i~yv~Q~~~-l~~~ 129 (449)
..+++++++.+++| +.|+||||+|||||+++|+|... .|.+.++|.+.... .+.+.+++|... ..|.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 45788999999999 99999999999999999999763 57888888653211 123455666643 3445
Q ss_pred CCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 130 LTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
+.+.+++......+.. ......+..+.+.+++. .||||++|+..|+++..++|++ |||+.-
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 5555555322111100 00112233334444443 3689999999999999999987 898864
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.31 E-value=9.6e-08 Score=94.73 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=55.3
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----------c---cCcEEEE-cCC
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----------A---YGTSAYV-TQD 123 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----------~---~~~i~yv-~Q~ 123 (449)
+++++|.+++|++++|+||||+||||++..|++.+.+ ..|+|.+.+.+... . ...+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~---~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE---LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 4789999999999999999999999999999998865 36889887755310 0 3357888 665
Q ss_pred CCCCCCCCHHHHHH
Q 044030 124 DTLITTLTVKEAVY 137 (449)
Q Consensus 124 ~~l~~~lTv~e~l~ 137 (449)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444434444443
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.30 E-value=2e-06 Score=86.24 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=80.8
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEecc-----cccCcEEEEcCCCC-CC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR--LGSDTRQTGKILINGHKKA-----LAYGTSAYVTQDDT-LI 127 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~--~~~~~~~~G~I~~~g~~~~-----~~~~~i~yv~Q~~~-l~ 127 (449)
..+|++++++++ .++|+|++|||||||++.|+|. ++.+ +|.++-...... ......+...+.+. .+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKF 97 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCB
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCcccCcceEEEEecCCCcccceeeeecCCCccc
Confidence 468999999998 8999999999999999999994 3332 444432222110 01122333333221 11
Q ss_pred CCC-CHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHcCCchhhCccC-------CCCChHHHHHHHHHHHHHhCCCE
Q 044030 128 TTL-TVKEAVYYSAQLQLP--DTMPKSDKKERAEVTIREMGLQDAMNTRI-------RRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 128 ~~l-Tv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-------~~LSgGerqRv~ia~aL~~~P~l 197 (449)
.+. .+.+.+.-......+ .+.+.......+.. -....+ ...|++. ...++.++++..+++..+.+|++
T Consensus 98 ~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~-~~~~~l-~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~ 175 (360)
T 3t34_A 98 TDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYS-PNVVNL-TLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNC 175 (360)
T ss_dssp SCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEE-TTSCSE-EEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeC-CCCCCe-EEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCe
Confidence 110 111111100000000 00000000000000 000000 1123332 23567889999999999999998
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEec
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH 237 (449)
+++.-..+..|... ...+++++.+... |. .+|++.+.
T Consensus 176 iilvv~~~~~~~~~-~~~~~l~~~~~~~-~~-~~i~V~nK 212 (360)
T 3t34_A 176 IILAISPANQDLAT-SDAIKISREVDPS-GD-RTFGVLTK 212 (360)
T ss_dssp EEEEEEETTSCGGG-CHHHHHHHHSCTT-CT-TEEEEEEC
T ss_pred EEEEeecccCCcCC-HHHHHHHHHhccc-CC-CEEEEEeC
Confidence 87774333445433 4456666766533 32 37777765
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.30 E-value=2.6e-08 Score=91.54 Aligned_cols=53 Identities=32% Similarity=0.417 Sum_probs=43.5
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEec
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI--LINGHKK 110 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I--~~~g~~~ 110 (449)
+.....+.+++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.+.
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~----~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY----QKGKLCYILDGDNV 64 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEEEHHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH----hcCceEEEecCchh
Confidence 44567778888889999999999999999999999999874 25766 7777543
No 181
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.27 E-value=1e-06 Score=86.44 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 177 LSGGQKRRVSISIEIL--TRPKLLFLDEPTSGLDSAA-SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 177 LSgGerqRv~ia~aL~--~~P~llllDEPtsgLD~~~-~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
+|+|++ .++..+. ..|.++++ +.+|... ...+.+.+.++++..|....+.+++|+- ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 898886 4566666 68999998 7899876 6778888888876544223667777774 45777777654
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.26 E-value=4.2e-07 Score=83.04 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=27.4
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
+++.+|++++|+||||||||||+++|++.+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 36789999999999999999999999998854
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.26 E-value=2.4e-07 Score=85.04 Aligned_cols=127 Identities=14% Similarity=0.187 Sum_probs=70.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK 150 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 150 (449)
+++|+|||||||||+.++|+++ |...+++.... + ....+ +
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l--------g~~~id~d~~~---------------------~-------~~~~~-~--- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL--------GVPLVDADVVA---------------------R-------EVVAK-D--- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT--------TCCEEEHHHHH---------------------H-------HTTCS-S---
T ss_pred EEEEECCCCCCHHHHHHHHHHC--------CCcccchHHHH---------------------H-------HHccC-C---
Confidence 6899999999999999999983 32233321110 0 00000 0
Q ss_pred HHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCe
Q 044030 151 SDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230 (449)
Q Consensus 151 ~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ 230 (449)
...+.++.+.+|.... .+.|+.+|..++.....+|+.+.++ .+.++|.....+.+.+... .+.
T Consensus 44 ---~~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~-- 106 (206)
T 1jjv_A 44 ---SPLLSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAP-- 106 (206)
T ss_dssp ---CHHHHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSS--
T ss_pred ---hHHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCC--
Confidence 0123444555554321 3678889999988888887644332 3455666655555544332 233
Q ss_pred EEEEEecCCcHH-HHhhcCeEEEee
Q 044030 231 TIIASIHQPSSE-VFQLFHNLCLLS 254 (449)
Q Consensus 231 tii~~tH~~~~~-i~~~~D~v~~l~ 254 (449)
++|+.+|...+. +...||.+++++
T Consensus 107 ~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 107 YTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp EEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred EEEEEechhhhcCcHhhCCEEEEEE
Confidence 888888875321 256788888875
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=3.9e-07 Score=83.54 Aligned_cols=40 Identities=33% Similarity=0.282 Sum_probs=24.8
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+...+++||||++++|++++|+||+||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999999999999999999865
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.23 E-value=1e-06 Score=87.03 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=86.7
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
+..-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.-+ ++..+
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g-------------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND-------------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CEEEEEESS------SCHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC-------------CeEEEEECC------CCHHH
Confidence 34568888777999999999999999999998888753211 11 124444321 34433
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
.. .++......+.+.+..+.. ..||.++++|+..|...+.++++++.|+|... ...
T Consensus 111 l~------------------~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~ 166 (315)
T 3bh0_A 111 NI------------------KRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNY 166 (315)
T ss_dssp HH------------------HHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHH
T ss_pred HH------------------HHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHH
Confidence 32 1111111122222222211 23899999999999999999999999998643 445
Q ss_pred HHHHHHHHHhhcCCCeE--EEEEecC
Q 044030 215 VMSRIAKLGQRDGIGRT--IIASIHQ 238 (449)
Q Consensus 215 i~~~l~~l~~~~g~g~t--ii~~tH~ 238 (449)
+...++++.++.|. . +|++-|-
T Consensus 167 i~~~i~~l~~~~~~--~~~lVVID~l 190 (315)
T 3bh0_A 167 IWSKTRQTKRKNPG--KRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHHHTSSS--CCEEEEEECG
T ss_pred HHHHHHHHHHhcCC--CCeEEEEeCc
Confidence 66777777666555 6 7777653
No 186
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.22 E-value=3.8e-06 Score=83.96 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=34.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
.+|.++++||+... |......+.+.+.++......+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888876653110144899999996
No 187
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.21 E-value=4.4e-07 Score=81.92 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=29.9
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN 106 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~ 106 (449)
+|++++|+||||||||||+++|++..++. ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 68999999999999999999999987531 35655443
No 188
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.14 E-value=1.3e-05 Score=79.24 Aligned_cols=139 Identities=21% Similarity=0.281 Sum_probs=80.1
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRL-GSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL 142 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~-~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 142 (449)
+-+++|+++.|.||+|+|||||+..++... .+. ..| |. ...+.|+.-+..+ ...+-......+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 568999999999999999999998888642 120 011 10 1234555443322 122222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH-HHHHHHHHHHHH---hCCCEEEEeCCCCCCCH--------H
Q 044030 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG-QKRRVSISIEIL---TRPKLLFLDEPTSGLDS--------A 210 (449)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG-erqRv~ia~aL~---~~P~llllDEPtsgLD~--------~ 210 (449)
+... +++++.+-+ ....++. +.+.+..+++++ .+|+++++|+.++-.+. .
T Consensus 166 ----g~~~-------~~~~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~ 227 (324)
T 2z43_A 166 ----GLDI-------DNVMNNIYY-------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLA 227 (324)
T ss_dssp ----TCCH-------HHHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHH
T ss_pred ----CCCH-------HHHhccEEE-------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHH
Confidence 1111 112222111 1122333 235677777777 67999999999875532 1
Q ss_pred ----HHHHHHHHHHHHHhhcCCCeEEEEEecC
Q 044030 211 ----ASYYVMSRIAKLGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 211 ----~~~~i~~~l~~l~~~~g~g~tii~~tH~ 238 (449)
...+++..|+.++++.+. +||++.|-
T Consensus 228 ~r~~~~~~~l~~L~~la~~~~~--~Vi~~nq~ 257 (324)
T 2z43_A 228 VRQQKLNKHLHQLTRLAEVYDI--AVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--EEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--EEEEEcce
Confidence 235667778888877766 99998775
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.13 E-value=1.5e-05 Score=79.57 Aligned_cols=140 Identities=12% Similarity=0.140 Sum_probs=80.4
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRL-GSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL 142 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~-~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 142 (449)
+-+++|+++.|.||+|||||||+..++... .+. ...| . ...+.|+.-+..+ ....-......+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~-~~gg------~-----~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPG-AGGY------P-----GGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCB-TTTB------C-----CCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc-ccCC------C-----CCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 468999999999999999999999888742 110 0001 0 1234555544322 222222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH-HHHHHHHHHHH----hCCCEEEEeCCCCCCCHH-------
Q 044030 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ-KRRVSISIEIL----TRPKLLFLDEPTSGLDSA------- 210 (449)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~----~~P~llllDEPtsgLD~~------- 210 (449)
+... +++++.+-+. ...++.+ .+.+..++.++ .+++++++|+.++-....
T Consensus 181 ----g~~~-------~~~l~~l~~~-------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~ 242 (343)
T 1v5w_A 181 ----NVDH-------DAVLDNVLYA-------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL 242 (343)
T ss_dssp ----TCCH-------HHHHHTEEEE-------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCH
T ss_pred ----CCCH-------HHHHhceeEe-------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccH
Confidence 1111 1223322111 1223333 24455566666 568999999999866432
Q ss_pred -----HHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 211 -----ASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 211 -----~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
....++..|+.++++.|. +||++.|-.
T Consensus 243 ~~r~~~l~~~l~~L~~la~~~~~--~Vi~~nq~~ 274 (343)
T 1v5w_A 243 AERQQKLAQMLSRLQKISEEYNV--AVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--EEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--EEEEEeece
Confidence 135677778888877766 999888863
No 190
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.11 E-value=7.1e-07 Score=83.83 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=35.1
Q ss_pred eeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 62 LTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 62 vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
-++..++|++++|.|+||||||||+++|+|. .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445579999999999999999999999996 47788887653
No 191
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.06 E-value=1.1e-06 Score=90.76 Aligned_cols=70 Identities=11% Similarity=0.231 Sum_probs=48.3
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE-eeCCeEEEecChh
Q 044030 193 TRPKLLFLDEPTSGLDS-AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL-LSAGQTVYFGPAT 265 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~-~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~-l~~G~iv~~g~~~ 265 (449)
.+|++|++||+..-.+. ..+..++..+..+.+ .|. .||+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~--~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGK--QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTC--EEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCC--eEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999887664 677888899988874 444 9999999865433223333332 4557666666654
No 192
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.06 E-value=2e-06 Score=79.47 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=27.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998754
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.03 E-value=3e-05 Score=75.02 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHhh-cCCCeEEEEEecCCc---HHHH
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSA----------ASYYVMSRIAKLGQR-DGIGRTIIASIHQPS---SEVF 244 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~----------~~~~i~~~l~~l~~~-~g~g~tii~~tH~~~---~~i~ 244 (449)
++++.|..++.+...+|.+|++||+.+-++.. ....++..+...... .+.+..||.+|++|. ..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 56667777777888899999999998766532 223344444433211 011246788888742 3344
Q ss_pred hhcCeEEEe
Q 044030 245 QLFHNLCLL 253 (449)
Q Consensus 245 ~~~D~v~~l 253 (449)
+-|++.+.+
T Consensus 178 ~R~~~~i~~ 186 (297)
T 3b9p_A 178 RRFTKRVYV 186 (297)
T ss_dssp HHCCEEEEC
T ss_pred hhCCeEEEe
Confidence 456655444
No 194
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.03 E-value=5.1e-07 Score=86.22 Aligned_cols=62 Identities=23% Similarity=0.179 Sum_probs=43.5
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeccc------ccCcEEE
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA---GRLGSDTRQTGKIL--------INGHKKAL------AYGTSAY 119 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~---G~~~~~~~~~G~I~--------~~g~~~~~------~~~~i~y 119 (449)
.++++.+ ++|++++|+|||||||||++++|+ |+..+ .+|.|. .+|.+... ..+.+++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 91 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDV 91 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCE
Confidence 3455544 789999999999999999999999 87755 489988 77765421 1234677
Q ss_pred EcCCC
Q 044030 120 VTQDD 124 (449)
Q Consensus 120 v~Q~~ 124 (449)
++|.+
T Consensus 92 ~~~~~ 96 (252)
T 4e22_A 92 RFVSQ 96 (252)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 77643
No 195
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.95 E-value=2.3e-06 Score=76.20 Aligned_cols=35 Identities=31% Similarity=0.600 Sum_probs=29.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
.+|++++|+|||||||||++++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999853 66677664
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.94 E-value=2.1e-06 Score=93.30 Aligned_cols=44 Identities=34% Similarity=0.484 Sum_probs=32.7
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
|+.+++|..++|+|++|||||||++.|++...+. ...|+| .+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~ 46 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGT 46 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCc
Confidence 4567889999999999999999999999765431 246777 4554
No 197
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.94 E-value=1.4e-06 Score=79.92 Aligned_cols=40 Identities=30% Similarity=0.266 Sum_probs=33.2
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
.++|++++|+|+||||||||+++|++.+.+. .|.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5789999999999999999999999987542 577766544
No 198
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.93 E-value=7.5e-07 Score=88.27 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=36.4
Q ss_pred cccceeeeeeEEEecCe------EEEEECCCCCcHHHHHHHHHcCCC
Q 044030 54 GSSSILEDLTGYAKPGH------LLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge------~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+....|++++..+.+++ ++||+||||||||||+++|++++.
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678888888888877 999999999999999999999875
No 199
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.92 E-value=5.1e-05 Score=78.32 Aligned_cols=173 Identities=14% Similarity=0.108 Sum_probs=98.9
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
..-|+.+.+=+++|+++.|.|++|+|||||...++...... .| ..+.|+.= .++..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~sl------E~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSL------EMPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEES------SSCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEEC------CCCHHHH
Confidence 44677777779999999999999999999998887643210 11 11333322 1233322
Q ss_pred HHH--HHhccCC------CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH--hCCCEEEEeCCCC
Q 044030 136 VYY--SAQLQLP------DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL--TRPKLLFLDEPTS 205 (449)
Q Consensus 136 l~~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~llllDEPts 205 (449)
..- +.....+ ..++.. ...++...++.+.-.+..-....++|..+-+ +.++.+. .+|+++++|..+.
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~-~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~ 321 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDR-DFSRLVDVASRLSEAPIYIDDTPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQL 321 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHH-HHHHHHHHHHHHHTSCEEEECCTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGG
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHH-HHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhh
Confidence 210 1111100 012222 2233333344332111111112466776653 4555555 4899999999876
Q ss_pred CCCH----------HHHHHHHHHHHHHHhhcCCCeEEEEEecCCc------------------HHHHhhcCeEEEeeC
Q 044030 206 GLDS----------AASYYVMSRIAKLGQRDGIGRTIIASIHQPS------------------SEVFQLFHNLCLLSA 255 (449)
Q Consensus 206 gLD~----------~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~------------------~~i~~~~D~v~~l~~ 255 (449)
-.+. .....+.+.|+.++++.+. +||+++|-.. ..+.+.+|.|+.|..
T Consensus 322 ~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v--~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 322 MSGPGSGKSGENRQQEIAAISRGLKALARELGI--PIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CBCC-------CHHHHHHHHHHHHHHHHHHHTS--CEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCC--eEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 4432 1235688889999988876 9999988321 024667898888863
No 200
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.89 E-value=6e-06 Score=75.76 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=27.1
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|++++|+|++|||||||.+.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999975
No 201
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.88 E-value=1.3e-05 Score=70.36 Aligned_cols=31 Identities=42% Similarity=0.560 Sum_probs=25.3
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
++.++++.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 999999999999999999874
No 202
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.82 E-value=3.4e-06 Score=89.53 Aligned_cols=42 Identities=36% Similarity=0.496 Sum_probs=35.5
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG-KIL-INGHK 109 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G-~I~-~~g~~ 109 (449)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57799999999999999999999999998663 54 674 77754
No 203
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.82 E-value=6.7e-06 Score=72.88 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.9
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999975
No 204
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.79 E-value=8.1e-06 Score=75.20 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=26.2
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999764
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.75 E-value=5.8e-05 Score=77.59 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=68.2
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT 147 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 147 (449)
++.+++++||+||||||++..|++.+... .++|.+-+.+ .. .....+.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~~D--------------~~---r~~a~eqL~~--------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVAAD--------------VY---RPAAYDQLLQ--------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC--------------CS---CHHHHHHHHH---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEecC--------------cc---chhHHHHHHH---------
Confidence 58899999999999999999999877542 3444443222 10 0012222222
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHh
Q 044030 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPT-SG--LDSAASYYVMSRIAKLGQ 224 (449)
Q Consensus 148 ~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPt-sg--LD~~~~~~i~~~l~~l~~ 224 (449)
+-+..|+.-.... ....--.--+-+++.+...+++++|+|+|- .+ .|+....++.++++.+.
T Consensus 147 ------------~~~~~gv~~~~~~--~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~- 211 (433)
T 3kl4_A 147 ------------LGNQIGVQVYGEP--NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK- 211 (433)
T ss_dssp ------------HHHTTTCCEECCT--TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC-
T ss_pred ------------HHHhcCCceeecc--ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC-
Confidence 2222233211100 011111111224445555689999999997 45 78887777777666553
Q ss_pred hcCCCeEEEEEecC
Q 044030 225 RDGIGRTIIASIHQ 238 (449)
Q Consensus 225 ~~g~g~tii~~tH~ 238 (449)
.. ...+++.+|.
T Consensus 212 pd--~vlLVlDa~~ 223 (433)
T 3kl4_A 212 PD--DVILVIDASI 223 (433)
T ss_dssp CS--EEEEEEEGGG
T ss_pred Cc--ceEEEEeCcc
Confidence 22 2244555543
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.70 E-value=4.6e-05 Score=74.33 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=26.2
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788999999999999999999999864
No 207
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.69 E-value=0.00071 Score=67.76 Aligned_cols=37 Identities=35% Similarity=0.397 Sum_probs=29.5
Q ss_pred cceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 56 SSILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 56 ~~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
..-|+.+- +=+++|+++.|.||+|+|||||...++..
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556543 35899999999999999999999887753
No 208
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.69 E-value=3.3e-05 Score=85.62 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=28.2
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+.+++|+.++|.||||||||||+++|+|.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999999999999863
No 209
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.66 E-value=2.4e-05 Score=69.68 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 210
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.65 E-value=7.7e-06 Score=81.30 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.9
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998653
No 211
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.64 E-value=3.6e-06 Score=84.00 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=42.6
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
+.+.+++++++.+.+|.+++|+|++|||||||++.|+|.+.+. .|+|.+-+.
T Consensus 41 ~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~ 92 (341)
T 2p67_A 41 LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEee
Confidence 3457899999999999999999999999999999999987542 455655443
No 212
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.63 E-value=0.0005 Score=64.23 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=29.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecC
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~ 238 (449)
.+|+++|+..+.+.++......+..+++.+....+ ..++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~-~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERAR-SFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHG-GGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhcc-ceEEEEEeCC
Confidence 37899999999888888666555555544432111 1278888883
No 213
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.59 E-value=5.3e-05 Score=69.74 Aligned_cols=31 Identities=39% Similarity=0.461 Sum_probs=25.3
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+.++.+.+ .+++|+|||||||||++++|.-.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHH
Confidence 45566665 49999999999999999998643
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.53 E-value=1.9e-05 Score=70.55 Aligned_cols=38 Identities=34% Similarity=0.404 Sum_probs=29.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG--KILINGH 108 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G--~I~~~g~ 108 (449)
.+|++++|+|++||||||+.++|++.+.+ .| .|.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECCh
Confidence 47899999999999999999999997633 24 5555543
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.51 E-value=3.2e-05 Score=72.63 Aligned_cols=37 Identities=32% Similarity=0.449 Sum_probs=26.9
Q ss_pred eeeeeeEEEe---cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 58 ILEDLTGYAK---PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 58 iL~~vs~~i~---~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
=|.++|+++. +|.+++|.||+||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677777776 899999999999999999999999764
No 216
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.50 E-value=0.00045 Score=67.79 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=88.9
Q ss_pred ceeeeee-EEEecCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEE-ECCEecc-cccCcEEEEcCCCCCCCCCCH
Q 044030 57 SILEDLT-GYAKPGHLLAIMGPSGSGKTTLLDALAGRL-GSDTRQTGKIL-INGHKKA-LAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 57 ~iL~~vs-~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~-~~~~~~~G~I~-~~g~~~~-~~~~~i~yv~Q~~~l~~~lTv 132 (449)
..|+.+- +-+++|+++.|.||+|+|||||...++... .+ .|..+ ++|.... .....+.|+.-+..+ ..
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~----~~~~~~~~~~~~gg~~~~~v~yi~~e~~~----~~ 156 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP----EFLFYDEEAVSKGEVAQPKAVYIDTEGTF----RP 156 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG----GGEECCTTTSCTTTTSSEEEEEEESSSCC----CH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhcc----ccccccccccccCCCCCceEEEEECCCCC----CH
Confidence 3455443 578999999999999999999998877521 11 11100 0011000 000235566544332 12
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH-HHHHHHHHHHH---hCCCEEEEeCCCCCCC
Q 044030 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ-KRRVSISIEIL---TRPKLLFLDEPTSGLD 208 (449)
Q Consensus 133 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~---~~P~llllDEPtsgLD 208 (449)
.+-.....++. .+. +++++.+-+. ...+..+ .+-+..+..++ .+++++++|.-++-..
T Consensus 157 ~~l~~~~~~~g----~~~-------~~~~~~l~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 157 ERIMQMAEHAG----IDG-------QTVLDNTFVA-------RAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHHHHHHHHHT----CCH-------HHHHHTEEEE-------ECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred HHHHHHHHHcC----CCH-------HHHhcCEEEE-------eCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 22222222221 111 1122211111 1122222 23344455565 4589999999875321
Q ss_pred --------HH----HHHHHHHHHHHHHhhcCCCeEEEEEecCCc---------------HHHHhhcCeEEEeeCC
Q 044030 209 --------SA----ASYYVMSRIAKLGQRDGIGRTIIASIHQPS---------------SEVFQLFHNLCLLSAG 256 (449)
Q Consensus 209 --------~~----~~~~i~~~l~~l~~~~g~g~tii~~tH~~~---------------~~i~~~~D~v~~l~~G 256 (449)
.. ...+++..|+.++++.+. +||++.|-.. ..+.+.+|.++.|+..
T Consensus 219 ~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~--~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 219 NEYTGRGKLAERQQKLGRHMATLNKLADLFNC--VVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp HHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence 11 235667778888877766 8888876321 1255677888888643
No 217
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.50 E-value=2.1e-05 Score=78.70 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=32.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
+++.+++|+|++|||||||+|.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 457899999999999999999999976542 5677665544
No 218
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.45 E-value=0.00046 Score=71.24 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=30.0
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
..-|+.+..=+.+|+++.|.|++|+|||||.--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 345666666689999999999999999999877765
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.43 E-value=0.00017 Score=65.53 Aligned_cols=24 Identities=46% Similarity=0.553 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999865
No 220
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.42 E-value=1.7e-05 Score=79.96 Aligned_cols=52 Identities=29% Similarity=0.367 Sum_probs=44.2
Q ss_pred eEEEEeeEEEEeecCcccccceee--------------eeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILE--------------DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.|+|+++. ++ ..+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~-yP----~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPL-HA----NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEE-SC----CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred Cceecccccc-CC----CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3567888876 22 4567888 899999999999999999999999999999864
No 221
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.42 E-value=0.00031 Score=68.78 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=32.5
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 192 LTRPKLLFLDEPTS-GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 192 ~~~P~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
..+|.+|++||+-. .-+...+..+...+..+.+ .+. .+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~--~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEK--QIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTC--EEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCC--eEEEEecCC
Confidence 45799999999865 2344778888888888764 343 677777654
No 222
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.41 E-value=2.1e-05 Score=83.32 Aligned_cols=49 Identities=33% Similarity=0.524 Sum_probs=40.4
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
..+++++++.+ +|+.++|+||||+|||||+++|++.+.+ ..|.|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR---KFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC---EEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC---CeEEEEeccc
Confidence 45678888888 8999999999999999999999998754 3677766653
No 223
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.40 E-value=0.00019 Score=63.57 Aligned_cols=27 Identities=44% Similarity=0.683 Sum_probs=23.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999964
No 224
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.38 E-value=8e-05 Score=68.82 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=27.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI 105 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~ 105 (449)
+.+++|+|||||||||+.++|++.+......+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865221123566654
No 225
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.36 E-value=2.9e-05 Score=72.85 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 178 SGGQKRRVSISIEILTRPKLLFLDEPTS-GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 178 SgGerqRv~ia~aL~~~P~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+..... +. .++++|.--+...+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~--~~-~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP--EV-RIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT--TS-EEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC--CC-eEEEEecCCCHHHHHHHcCC
Confidence 445555542 33578899999999976 6887776555555554432 11 25665544334445555543
No 226
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=0.00058 Score=65.30 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=24.2
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.++.-+.|.||+|+|||||.++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999864
No 227
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.33 E-value=0.00021 Score=71.87 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=34.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~ 90 (449)
..++.|+..-+ ..++++.+++.+| +++|.|||||||||+|.+|.
T Consensus 3 M~l~~L~l~nF--------r~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNF--------KSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEcc--------ccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45666766521 2347778888774 99999999999999999986
No 228
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.31 E-value=0.00022 Score=64.14 Aligned_cols=35 Identities=37% Similarity=0.535 Sum_probs=20.9
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.+++++|+..++. .++|+|++|+|||||++.+++.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 5689999999999999999984
No 229
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.31 E-value=0.0002 Score=73.62 Aligned_cols=40 Identities=28% Similarity=0.486 Sum_probs=31.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEec
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGS------D---TRQTGKILINGHKK 110 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~------~---~~~~G~I~~~g~~~ 110 (449)
.++|+|+||+|||||+|.|+|.... + .+..|.+.++|.+.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 7999999999999999999997530 0 12468899999753
No 230
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.29 E-value=0.0047 Score=64.45 Aligned_cols=169 Identities=14% Similarity=0.169 Sum_probs=88.4
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
.-|+.+..=+.+|+++.|.|++|+|||||+-.++-..... .| ..+.|+.= +++..+.+
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g-------------~~vl~~s~------E~s~~~l~ 287 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MG-------------KKVGLAML------EESVEETA 287 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SC-------------CCEEEEES------SSCHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cC-------------CcEEEEec------cCCHHHHH
Confidence 4455555569999999999999999999987666432110 11 12334432 23444333
Q ss_pred HH--HHhccCCCCCCH--HH-----HHHHHHHHHHHc-CCch-hhCccCCCCChHHHHHHHHHHHHH--hCCCEEEEeCC
Q 044030 137 YY--SAQLQLPDTMPK--SD-----KKERAEVTIREM-GLQD-AMNTRIRRLSGGQKRRVSISIEIL--TRPKLLFLDEP 203 (449)
Q Consensus 137 ~~--~~~~~~~~~~~~--~~-----~~~~v~~~l~~l-gL~~-~~~~~~~~LSgGerqRv~ia~aL~--~~P~llllDEP 203 (449)
.= +..... .... .. ..+....+.+.+ .-.+ ..+..+.+++-.+ -+..++.++ .+|+++++|=-
T Consensus 288 ~r~~~~~~~~--~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~--i~~~i~~~~~~~~~~lvVID~l 363 (503)
T 1q57_A 288 EDLIGLHNRV--RLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDHI 363 (503)
T ss_dssp HHHHHHHTTS--CCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHH--HHHHHHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHcCC--ChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHH--HHHHHHHHHHhcCCCEEEEccc
Confidence 21 111111 1110 00 000111122222 1000 1111122244333 334445554 46999999944
Q ss_pred CCCC-------CH-HHHHHHHHHHHHHHhhcCCCeEEEEEecCCc---------------------HHHHhhcCeEEEee
Q 044030 204 TSGL-------DS-AASYYVMSRIAKLGQRDGIGRTIIASIHQPS---------------------SEVFQLFHNLCLLS 254 (449)
Q Consensus 204 tsgL-------D~-~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~---------------------~~i~~~~D~v~~l~ 254 (449)
+ .+ +. .....++..|+.++++.+. +||+++|-.. ..+.+.+|-|+.|.
T Consensus 364 ~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i--~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 364 S-IVVSASGESDERKMIDNLMTKLKGFAKSTGV--VLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp T-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTC--EEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEE
T ss_pred h-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--eEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEE
Confidence 3 22 11 2335688889999988877 9999988542 13567799999986
No 231
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.26 E-value=0.00032 Score=64.61 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.6
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998754
No 232
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.26 E-value=5.9e-05 Score=69.41 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=33.3
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG--KILINGH 108 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G--~I~~~g~ 108 (449)
.+++|.+++|+|++||||||+.+.|++.+.+ ..| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~---~~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR---DRRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH---HHCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc---ccCCcEEEECCh
Confidence 3568999999999999999999999998753 256 6777654
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.25 E-value=0.00012 Score=65.97 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=26.4
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.25 E-value=0.00012 Score=66.88 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=25.3
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999999999865
No 235
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.21 E-value=0.00015 Score=65.36 Aligned_cols=39 Identities=41% Similarity=0.424 Sum_probs=29.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
.+++|+|+||||||||++.|.+.+......-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 589999999999999999999875432123466666543
No 236
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.18 E-value=0.00015 Score=65.93 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 044030 71 LLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G 91 (449)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 237
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.14 E-value=8e-05 Score=67.63 Aligned_cols=37 Identities=43% Similarity=0.563 Sum_probs=31.7
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-..+++++|+..+++. ++|+|++|+|||||++.+.+-
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3468999999888885 689999999999999999873
No 238
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.10 E-value=0.0071 Score=60.69 Aligned_cols=35 Identities=34% Similarity=0.417 Sum_probs=27.8
Q ss_pred ceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 57 SILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 57 ~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.-|+.+- +=+++|+++.|.||+|+|||||...++.
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3454433 3689999999999999999999877664
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.10 E-value=0.00011 Score=75.34 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=38.1
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
+++++. +|++++++|+|||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 678887 89999999999999999999999988652 5777776644
No 240
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.03 E-value=0.00032 Score=61.38 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 241
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.02 E-value=6.4e-05 Score=74.42 Aligned_cols=42 Identities=31% Similarity=0.609 Sum_probs=37.1
Q ss_pred cccceeeeeeEEEecCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 044030 54 GSSSILEDLTGYAKPGHL--LAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~--~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
|...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 455688899999999999 999999999999999999997643
No 242
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.00 E-value=7e-05 Score=74.87 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=33.9
Q ss_pred ceeeeeeEEEecCeE--EEEECCCCCcHHHHHHHHHcCC
Q 044030 57 SILEDLTGYAKPGHL--LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~--~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478888889999998 9999999999999999999865
No 243
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.00 E-value=0.0054 Score=56.79 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=42.8
Q ss_pred HhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH---------HHHhhcCeEEEee
Q 044030 192 LTRPKLLFLDEPTS----GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS---------EVFQLFHNLCLLS 254 (449)
Q Consensus 192 ~~~P~llllDEPts----gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~---------~i~~~~D~v~~l~ 254 (449)
-.+|+++++|--+. .-|......++..|+.++++.|. ++++++|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i--~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGV--TTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCC--EEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCC--CeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45889999996432 12455567788889999988877 99999986422 1245788888875
No 244
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.96 E-value=0.0004 Score=62.26 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=26.0
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
..+|.+++|+|++||||||+.+.|++.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999998764
No 245
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.94 E-value=0.00034 Score=63.58 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999854
No 246
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.93 E-value=0.00043 Score=61.75 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=22.8
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999853
No 247
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.92 E-value=8.7e-05 Score=72.59 Aligned_cols=45 Identities=24% Similarity=0.206 Sum_probs=35.8
Q ss_pred ee-eeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 60 ED-LTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 60 ~~-vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
++ +++..+ |++++++|+||+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 777766 9999999999999999999999987542 456665543
No 248
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.91 E-value=0.00019 Score=68.16 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=34.4
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
++++.+ ...++.++.|+|+|||||||+.+.|+..+. .|.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHH
Confidence 344444 566788999999999999999999998653 2456666643
No 249
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.91 E-value=0.00038 Score=70.68 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=33.3
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCC-----C---CCCceeEEEECCE
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG-----S---DTRQTGKILINGH 108 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~-----~---~~~~~G~I~~~g~ 108 (449)
-..+..|..++|+|+||+|||||+|+|+|... | -.+..|.+.+.|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34567788899999999999999999999721 0 0134688887764
No 250
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.82 E-value=0.00038 Score=65.77 Aligned_cols=34 Identities=38% Similarity=0.676 Sum_probs=24.4
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 345555555555 8899999999999999999865
No 251
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.81 E-value=0.00091 Score=66.23 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999754
No 252
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.81 E-value=0.00055 Score=61.01 Aligned_cols=23 Identities=52% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999963
No 253
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.81 E-value=0.00061 Score=59.63 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.80 E-value=0.00061 Score=63.73 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=24.4
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999743
No 255
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.78 E-value=0.00074 Score=59.71 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999865
No 256
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.76 E-value=0.0069 Score=60.30 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=23.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999999754
No 257
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.75 E-value=0.0057 Score=57.10 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=41.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEec---------CCcHHHHhhcCeEEEee
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH---------QPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH---------~~~~~i~~~~D~v~~l~ 254 (449)
+|+++++||--. |+. .+++.++.+++. |. +||++-| .++..+..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~-gi--~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAEN-GF--VVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHT-TC--EEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhC-CC--eEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999954 654 355666777754 55 9999999 56678889999999875
No 258
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.75 E-value=0.0047 Score=57.86 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+..-+.|.||+|+|||||.++++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999999854
No 259
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.73 E-value=0.0059 Score=60.04 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=22.0
Q ss_pred EEEecCeEEEEECCCCCcHHHHH-HHHHc
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLL-DALAG 91 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL-~~l~G 91 (449)
+=+++| ++.|.||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 457889 9999999999999995 54444
No 260
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.68 E-value=0.022 Score=55.85 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=23.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..-+.|.||+|+|||||.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999854
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.66 E-value=0.00097 Score=59.36 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998744
No 262
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.63 E-value=0.026 Score=66.66 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=26.4
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 49999999999999999999999888753
No 263
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.0033 Score=56.51 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=28.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
.++.++++||. ..+++.....+.+.+.... . +..+|++++.+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~--~--~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS--K--SCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT--T--TEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC--C--CCeEEEEeCCh
Confidence 36889999995 5577777777777766532 1 33677777764
No 264
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.62 E-value=0.00047 Score=69.13 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=34.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.+.+.|++.. + +.+.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~-~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQ-V-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHH-H-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHH-h-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 4677777665 1 4567889999887 9999999999999999988643
No 265
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.60 E-value=0.001 Score=62.63 Aligned_cols=25 Identities=36% Similarity=0.660 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999643
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.57 E-value=0.0011 Score=63.01 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999854
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.56 E-value=0.0011 Score=57.62 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 044030 71 LLAIMGPSGSGKTTLLDAL 89 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l 89 (449)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 268
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.56 E-value=0.0011 Score=59.12 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=23.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999864
No 269
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.54 E-value=0.0066 Score=59.81 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=27.7
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
|+.+-+-+++|.++.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 333336789999999999999999999999875
No 270
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.50 E-value=0.0012 Score=59.90 Aligned_cols=23 Identities=48% Similarity=0.756 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999997654
No 271
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.50 E-value=0.0014 Score=60.15 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHc
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 272
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.48 E-value=0.028 Score=66.40 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=28.6
Q ss_pred ceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 57 SILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 57 ~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.-|+.+- +=+++|+++.|.||+|+|||||.-.++.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4566654 3599999999999999999999877664
No 273
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.46 E-value=0.0015 Score=58.81 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999854
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.45 E-value=0.0016 Score=57.98 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.2
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998643
No 275
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.40 E-value=0.0019 Score=58.50 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998653
No 276
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.40 E-value=0.0015 Score=58.03 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++..+.|.|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999853
No 277
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.40 E-value=0.0019 Score=58.31 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+|-+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999865
No 278
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.40 E-value=0.0013 Score=62.72 Aligned_cols=47 Identities=11% Similarity=0.014 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE
Q 044030 203 PTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL 252 (449)
Q Consensus 203 PtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~ 252 (449)
|||+++......+++.+.+..+.... ++.+..|.. .++.+.++++.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~--~~~~~~~~~-~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVT--TNPIIPRYD-EDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCC--CCCCCCCCC-HHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcccc--CCCCCcCCC-HHHHHHHHHHHH
Confidence 89999998888888888887754433 555666664 567776666543
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.39 E-value=0.0018 Score=57.07 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 044030 70 HLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G 91 (449)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 280
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.34 E-value=0.0018 Score=57.31 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999754
No 281
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.33 E-value=0.0015 Score=58.48 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.+++|+|++|||||||++.|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998653
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.30 E-value=0.00096 Score=60.76 Aligned_cols=24 Identities=46% Similarity=0.785 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998663
No 283
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.30 E-value=0.0019 Score=62.58 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=28.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g 107 (449)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3567899999999999999999987542 24566665
No 284
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.28 E-value=0.0021 Score=58.34 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=23.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998643
No 285
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.27 E-value=0.0022 Score=57.74 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999974
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.27 E-value=0.002 Score=57.61 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=23.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998643
No 287
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.24 E-value=0.018 Score=57.26 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=22.8
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..-+.|.||+|+|||||.++|+...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 444568899999999999999999854
No 288
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.23 E-value=0.0026 Score=56.61 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999853
No 289
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.20 E-value=0.0023 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 290
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0022 Score=57.02 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.++|+|++|+|||||++.+++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 291
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.19 E-value=0.0024 Score=57.98 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|-+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998653
No 292
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.15 E-value=0.0027 Score=59.47 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=45.5
Q ss_pred HHHhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhhcCCCeEEEEEec-----CC----------------cHHHHhhc
Q 044030 190 EILTRPKLLFLDEPTSG-LDSAASYYVMSRIAKLGQRDGIGRTIIASIH-----QP----------------SSEVFQLF 247 (449)
Q Consensus 190 aL~~~P~llllDEPtsg-LD~~~~~~i~~~l~~l~~~~g~g~tii~~tH-----~~----------------~~~i~~~~ 247 (449)
++..+|+++++||+-.- .+.......++.+..+. ..| ..++.++| .. .+.+++.|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l-~sg--idVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a 156 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL-AAG--IDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEA 156 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH-HTT--CEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTC
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH-cCC--CCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhC
Confidence 34468999999998642 33222222333333333 334 48999988 21 12345566
Q ss_pred CeEEEeeCCeEEEecChhhHHHHHHHCCCCCC
Q 044030 248 HNLCLLSAGQTVYFGPATAANEFFAFNGFPCP 279 (449)
Q Consensus 248 D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~ 279 (449)
|.|.+++ -+|+++.+.+..-....|
T Consensus 157 ~~v~lvD-------~~p~~l~~rl~~g~vy~~ 181 (228)
T 2r8r_A 157 FDLVLID-------LPPRELLERLRDGKVYVP 181 (228)
T ss_dssp SEEEEBC-------CCHHHHHHHHHTTCCCCT
T ss_pred CeEEEec-------CCHHHHHHHHHCCCccCh
Confidence 6666654 478887776655444444
No 293
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.13 E-value=0.0028 Score=55.05 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999854
No 294
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.12 E-value=0.0026 Score=54.79 Aligned_cols=23 Identities=13% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998854
No 295
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0029 Score=54.57 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999984
No 296
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.08 E-value=0.0023 Score=55.12 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||++.++|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7899999999999999998854
No 297
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.07 E-value=0.0068 Score=63.18 Aligned_cols=28 Identities=36% Similarity=0.605 Sum_probs=23.7
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4555669999999999999999998753
No 298
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.07 E-value=0.0029 Score=54.20 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 299
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.06 E-value=0.0043 Score=59.62 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 300
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.06 E-value=0.0026 Score=57.08 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=23.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998643
No 301
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.05 E-value=0.003 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
No 302
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.04 E-value=0.06 Score=64.54 Aligned_cols=36 Identities=33% Similarity=0.387 Sum_probs=28.9
Q ss_pred ceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 57 SILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 57 ~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.-|+.+- +=+++|+++.|.||+|+|||||.-.++..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3455554 35999999999999999999998777653
No 303
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.04 E-value=0.003 Score=54.17 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
No 304
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.03 E-value=0.0031 Score=56.92 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
No 305
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.03 E-value=0.0027 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998754
No 306
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.03 E-value=0.0033 Score=54.36 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 307
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.02 E-value=0.0034 Score=56.15 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 308
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.01 E-value=0.0032 Score=54.30 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999865
No 309
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.00 E-value=0.003 Score=55.08 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
No 310
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.99 E-value=0.0033 Score=54.29 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
No 311
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.98 E-value=0.0033 Score=54.12 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.98 E-value=0.0039 Score=57.26 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=22.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+|-.++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 313
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.97 E-value=0.0052 Score=61.62 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=28.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC-----C---CCCceeEEEECC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLG-----S---DTRQTGKILING 107 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~-----~---~~~~~G~I~~~g 107 (449)
|-.++|+|.+|+|||||+|+|+|... | -.+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999999431 0 012357777765
No 314
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.96 E-value=0.0034 Score=54.69 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
No 315
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.96 E-value=0.0028 Score=56.17 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 316
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.95 E-value=0.0034 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 317
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.95 E-value=0.0031 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999854
No 318
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.95 E-value=0.0035 Score=54.72 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998854
No 319
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.94 E-value=0.0027 Score=56.15 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=18.4
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998644
No 320
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.94 E-value=0.0059 Score=59.93 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=32.2
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
....+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346788888777 8899999999999999999999874
No 321
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.92 E-value=0.0032 Score=55.98 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 322
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.91 E-value=0.0039 Score=57.67 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=22.2
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998643
No 323
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.90 E-value=0.0048 Score=53.79 Aligned_cols=25 Identities=44% Similarity=0.569 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4468999999999999999998843
No 324
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.90 E-value=0.0025 Score=64.26 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=34.6
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 194 RPKLLFLDEPTSGLD---SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 194 ~P~llllDEPtsgLD---~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
.|.++++||-=.=++ +..+..+.+.+++.+ +.|. .++++||.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~R-k~g~--~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIR-KYNG--SLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGG-GGTC--EEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhh-hhCe--EEEEEcCCHHH
Confidence 578999999877774 667777778888776 4555 89999999753
No 325
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.89 E-value=0.0038 Score=58.87 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999964
No 326
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.87 E-value=0.0035 Score=55.49 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.+.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 327
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.86 E-value=0.0036 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999863
No 328
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.84 E-value=0.0044 Score=56.53 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 329
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.84 E-value=0.0041 Score=55.14 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.|..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 330
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.83 E-value=0.0041 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999754
No 331
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.83 E-value=0.0041 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999974
No 332
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.83 E-value=0.0046 Score=54.98 Aligned_cols=23 Identities=48% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 333
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.83 E-value=0.0037 Score=55.12 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999854
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.82 E-value=0.0052 Score=55.54 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+-+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998643
No 335
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.82 E-value=0.0047 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
No 336
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.82 E-value=0.068 Score=53.54 Aligned_cols=26 Identities=42% Similarity=0.692 Sum_probs=23.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++.-+.|.||+|+|||+|.++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998753
No 337
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.80 E-value=0.0043 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 338
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.78 E-value=0.0044 Score=55.14 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
No 339
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.78 E-value=0.0044 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 340
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.76 E-value=0.0054 Score=53.66 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998643
No 341
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.76 E-value=0.0044 Score=54.26 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
No 342
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.75 E-value=0.0047 Score=53.05 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
No 343
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.75 E-value=0.0054 Score=55.36 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
..+++|.|++||||||+.+.|+-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
No 344
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.73 E-value=0.0042 Score=57.12 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.++.|+||+||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998643
No 345
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.73 E-value=0.0029 Score=55.60 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.--++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999875
No 346
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.72 E-value=0.0053 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
No 347
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.70 E-value=0.0059 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998743
No 348
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.70 E-value=0.0053 Score=59.84 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||+|.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999853
No 349
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.69 E-value=0.0046 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 350
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.69 E-value=0.0051 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998854
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.68 E-value=0.0057 Score=54.27 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 352
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.68 E-value=0.0051 Score=53.88 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999754
No 353
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.67 E-value=0.0052 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999999854
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.67 E-value=0.0063 Score=57.73 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999875
No 355
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.66 E-value=0.0055 Score=59.77 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.++|+|++|+|||||+|.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999953
No 356
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.66 E-value=0.0048 Score=58.61 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|||||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999963
No 357
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.65 E-value=0.0048 Score=54.80 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
No 358
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.65 E-value=0.0057 Score=54.10 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3789999999999999999997643
No 359
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.65 E-value=0.0053 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999999854
No 360
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.64 E-value=0.0055 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999854
No 361
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.59 E-value=0.0055 Score=55.67 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.|++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999864
No 362
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.57 E-value=0.0049 Score=58.90 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999998754
No 363
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.56 E-value=0.0054 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 364
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.56 E-value=0.0059 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 365
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.55 E-value=0.0061 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999876664
No 366
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.55 E-value=0.0061 Score=54.68 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
No 367
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.55 E-value=0.0061 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999999854
No 368
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.54 E-value=0.0061 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.=-++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999754
No 369
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.53 E-value=0.0062 Score=54.03 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999854
No 370
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.52 E-value=0.0049 Score=55.47 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
No 371
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.51 E-value=0.0076 Score=56.60 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++-.++|.||+||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
No 372
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.51 E-value=0.0057 Score=61.42 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||+|.|+|..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999853
No 373
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.51 E-value=0.006 Score=57.45 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|||||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 374
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.50 E-value=0.0071 Score=58.23 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=23.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
..+.|.||+|+|||||.++|++....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 68999999999999999999997643
No 375
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0059 Score=54.31 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 376
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.49 E-value=0.0067 Score=57.63 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.48 E-value=0.0066 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999753
No 378
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.48 E-value=0.0072 Score=56.92 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 379
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.0061 Score=54.36 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998854
No 380
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.47 E-value=0.0061 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
No 381
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.45 E-value=0.0069 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+-.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 382
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.44 E-value=0.0074 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
No 383
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.44 E-value=0.0088 Score=52.31 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=23.1
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998754
No 384
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.43 E-value=0.0079 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.-+++|.|+.||||||+.+.|+-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 385
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.43 E-value=0.0066 Score=58.16 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|.+|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
No 386
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.41 E-value=0.0071 Score=54.25 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999973
No 387
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.40 E-value=0.0074 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998743
No 388
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.39 E-value=0.0072 Score=55.10 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998753
No 389
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.39 E-value=0.004 Score=56.74 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 390
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.38 E-value=0.0084 Score=55.40 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 391
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.37 E-value=0.0071 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 392
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.36 E-value=0.0068 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48899999999999999999854
No 393
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.36 E-value=0.007 Score=58.61 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|+.|||||||+|.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 394
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.35 E-value=0.0078 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999754
No 395
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.35 E-value=0.0071 Score=52.98 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
No 396
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.34 E-value=0.014 Score=53.51 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=28.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
...++..-.. ..|..++|+||+|||||||...|+..
T Consensus 22 ~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456665544 46789999999999999999999865
No 397
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.34 E-value=0.0079 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998743
No 398
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.0072 Score=53.76 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 399
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.31 E-value=0.0081 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 400
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.0081 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998854
No 401
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.008 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999964
No 402
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.31 E-value=0.0079 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 403
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.30 E-value=0.008 Score=55.36 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|+|++|+|||||++.++|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999884
No 404
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.29 E-value=0.014 Score=57.73 Aligned_cols=26 Identities=38% Similarity=0.632 Sum_probs=23.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999865
No 405
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.29 E-value=0.0082 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999753
No 406
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.0084 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 407
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.29 E-value=0.0061 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998864
No 408
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.28 E-value=0.0075 Score=54.26 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 409
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.28 E-value=0.0084 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 410
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.27 E-value=0.0082 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 411
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.26 E-value=0.0085 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.26 E-value=0.0091 Score=54.83 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
|-.++|+|++||||||+.+.|+-.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998643
No 413
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.23 E-value=0.0096 Score=54.00 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
No 414
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.23 E-value=0.0088 Score=57.55 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 415
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.23 E-value=0.005 Score=59.71 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=19.4
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998743
No 416
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.22 E-value=0.0075 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999975
No 417
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.22 E-value=0.008 Score=54.51 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988754
No 418
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.22 E-value=0.0023 Score=58.20 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=30.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
.+|.++++||.-. +|......+.+.+.+.. . +..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~--~--~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPP--E--HVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCC--T--TEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCC--C--ceEEEEEeCChH
Confidence 3578999999755 78877777766665421 1 347888888753
No 419
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.21 E-value=0.0072 Score=52.78 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 420
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.18 E-value=0.011 Score=54.87 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=23.5
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++..++.|+||+||||+|.-+.|+-.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998643
No 421
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.14 E-value=0.012 Score=54.30 Aligned_cols=28 Identities=43% Similarity=0.656 Sum_probs=24.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
-+|-+++|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987653
No 422
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.14 E-value=0.011 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 423
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.13 E-value=0.01 Score=54.29 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999864
No 424
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.12 E-value=0.009 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 425
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.12 E-value=0.0086 Score=57.35 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|.+|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 426
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.12 E-value=0.068 Score=50.02 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=42.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecC---------CcHHHHhhcCeEEEee
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ---------PSSEVFQLFHNLCLLS 254 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~---------~~~~i~~~~D~v~~l~ 254 (449)
.+.+++++||----.| +.+.++.+++ .| +.||++-++ +..++..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~-~g--i~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMAN-AG--KTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHH-TT--CEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHh-CC--CEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999876644 5566666654 44 499999999 8888999999998875
No 427
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.11 E-value=0.01 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999988753
No 428
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.09 E-value=0.012 Score=56.67 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 044030 70 HLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G 91 (449)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 429
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.07 E-value=0.01 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
No 430
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.06 E-value=0.0095 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 431
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.05 E-value=0.011 Score=52.81 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
-++|+|++|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998653
No 432
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.05 E-value=0.013 Score=54.34 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=22.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998643
No 433
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.04 E-value=0.011 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.+++..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 434
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.03 E-value=0.0071 Score=53.10 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 435
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.02 E-value=0.042 Score=50.82 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=41.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEec---------CCcHHHHhhcCeEEEee
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH---------QPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH---------~~~~~i~~~~D~v~~l~ 254 (449)
+.+++++||--- +|+. +++.++.++.. |. .||++-+ .+...+..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~-~~--~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANR-GY--RVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHT-TC--EEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhC-CC--EEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6543 33677777754 54 9999999 67888999999998876
No 436
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.98 E-value=0.0098 Score=53.18 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999763
No 437
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.98 E-value=0.011 Score=51.59 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=22.9
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999998765
No 438
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.95 E-value=0.011 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999854
No 439
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.94 E-value=0.011 Score=55.24 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=21.7
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+|-+++|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998765
No 440
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.92 E-value=0.012 Score=55.84 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 441
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.89 E-value=0.015 Score=60.11 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=29.9
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++.+ ..+-+|+..+|+||+|+|||||++.|++..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 355555 566789999999999999999999998754
No 442
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.88 E-value=0.013 Score=58.03 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999864
No 443
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.88 E-value=0.013 Score=59.67 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.5
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-.+..++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999999999999764
No 444
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.87 E-value=0.014 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=24.2
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987653
No 445
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.85 E-value=0.0066 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.++|..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
No 446
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.012 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999753
No 447
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.84 E-value=0.014 Score=53.60 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 448
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.84 E-value=0.012 Score=55.88 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 449
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.81 E-value=0.017 Score=56.73 Aligned_cols=25 Identities=48% Similarity=0.643 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999764
No 450
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.78 E-value=0.004 Score=61.03 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=32.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
+++++++|| ...|++.....+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~----~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG----VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT----TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC----CceEEEEeCchh
Confidence 567999999 788999988888888877542 235677777754
No 451
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.72 E-value=0.017 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++.|+||+||||+|.-+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998643
No 452
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.68 E-value=0.015 Score=53.02 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 453
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.67 E-value=0.015 Score=53.14 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.++|+|++|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 454
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.018 Score=53.70 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36689999999999999999999765
No 455
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.67 E-value=0.018 Score=53.30 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=24.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+|.++++-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987653
No 456
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.016 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 457
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.65 E-value=0.014 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998753
No 458
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.63 E-value=0.007 Score=54.14 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 459
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.61 E-value=0.01 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+-
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999653
No 460
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.60 E-value=0.018 Score=53.36 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=25.1
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.+|.++.+-|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999998764
No 461
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.60 E-value=0.018 Score=56.75 Aligned_cols=24 Identities=46% Similarity=0.653 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999864
No 462
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.60 E-value=0.015 Score=55.39 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999653
No 463
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.55 E-value=0.015 Score=59.91 Aligned_cols=22 Identities=36% Similarity=0.750 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|+|++|+|||||+|.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999984
No 464
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.54 E-value=0.022 Score=53.11 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=24.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+|-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998755
No 465
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.50 E-value=0.26 Score=59.22 Aligned_cols=36 Identities=33% Similarity=0.396 Sum_probs=30.6
Q ss_pred eeeeeeE--EEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 58 ILEDLTG--YAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 58 iL~~vs~--~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-|+.+.. =+++|+++.|.|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4666664 69999999999999999999998888754
No 466
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.46 E-value=0.017 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 467
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.45 E-value=0.018 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998753
No 468
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.44 E-value=0.014 Score=55.13 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++-+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998765
No 469
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.43 E-value=0.0048 Score=58.29 Aligned_cols=29 Identities=38% Similarity=0.647 Sum_probs=23.1
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+...+.| +.|.||+|+|||||.++|+...
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3344445 7799999999999999999854
No 470
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.40 E-value=0.034 Score=49.84 Aligned_cols=33 Identities=21% Similarity=0.046 Sum_probs=25.5
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.++..-. .-.|.-+.|.|+||+|||||.-.|..
T Consensus 6 ~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFL-VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4444433 34688899999999999999988875
No 471
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.38 E-value=0.018 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 472
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.31 E-value=0.0069 Score=67.01 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=28.8
Q ss_pred eeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 62 LTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 62 vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++.+.+++.++|.||||+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35677899999999999999999999999975
No 473
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.24 E-value=0.027 Score=55.14 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999754
No 474
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.22 E-value=0.025 Score=50.78 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc---------HHHHhhcCeEEEee
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS---------SEVFQLFHNLCLLS 254 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~---------~~i~~~~D~v~~l~ 254 (449)
+++++++||-=. +++ .+++.|+.++++ |. .|+++.++.. ..+...+|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~--~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GI--DVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TC--EEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CC--CEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 366677777755 54 8999888432 44666788887665
No 475
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.88 E-value=0.03 Score=56.74 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998754
No 476
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.84 E-value=0.027 Score=57.08 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 044030 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFL 200 (449)
Q Consensus 156 ~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llll 200 (449)
.+.++++.++.... ...+|.++..++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45666777766433 347899998888777777778988887
No 477
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.82 E-value=0.034 Score=55.27 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=22.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998764
No 478
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.79 E-value=0.03 Score=47.90 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
+..+|++||. ..|++..+..+.+.|.... . +..+|++|+.+.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~--~--~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEH--R--PFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSS--C--SSCEEEEESSCH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcC--C--CEEEEEECCcCH
Confidence 4578999998 4688888888888883321 1 236788887753
No 479
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.77 E-value=0.033 Score=53.45 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=23.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++.-+.|.||+|+|||||.++++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999998765
No 480
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.71 E-value=0.036 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999964
No 481
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.70 E-value=0.021 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|..|+|||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 482
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.69 E-value=0.08 Score=54.92 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=52.1
Q ss_pred CCCCChHHHHHHHH--HHHHHh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEe
Q 044030 174 IRRLSGGQKRRVSI--SIEILT---------------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASI 236 (449)
Q Consensus 174 ~~~LSgGerqRv~i--a~aL~~---------------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~t 236 (449)
.+++||||+|-.-+ +.+++. .-.++++||. +-+|.......+++++++ |.-+|+++
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l------glQliiat 449 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL------DMQLLIAA 449 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT------TCEEEEEE
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc------CCEEEEEC
Confidence 37899999997444 334333 1147999999 999999999999999865 33666776
Q ss_pred cCCcHHHHhhcCeEEEee
Q 044030 237 HQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 237 H~~~~~i~~~~D~v~~l~ 254 (449)
=. .+....|.++.+-
T Consensus 450 P~---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE---NISPERGTTYKLV 464 (483)
T ss_dssp SS---SCCCSSSEEEECC
T ss_pred cc---hhhhccCceEEEE
Confidence 44 3566788887764
No 483
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.68 E-value=0.034 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-+||+||+||||||+.+.|+-.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
No 484
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.75 E-value=0.012 Score=52.86 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 044030 71 LLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G 91 (449)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 489999999999999998875
No 485
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.66 E-value=0.029 Score=57.35 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||+|.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 486
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.59 E-value=0.038 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
--++|+|++|+|||||++.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998875
No 487
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.59 E-value=0.024 Score=51.63 Aligned_cols=21 Identities=43% Similarity=0.841 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHH-HHcC
Q 044030 72 LAIMGPSGSGKTTLLDA-LAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~-l~G~ 92 (449)
++|+|++|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 6554
No 488
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.54 E-value=0.17 Score=55.39 Aligned_cols=23 Identities=43% Similarity=0.717 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.|.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 489
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.52 E-value=0.008 Score=53.90 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 490
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.41 E-value=0.042 Score=51.99 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.+..-+.|.||+|+|||||.++|+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44557889999999999999999875
No 491
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.28 E-value=0.049 Score=55.93 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=24.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997653
No 492
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.27 E-value=0.034 Score=57.47 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=21.9
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+|=-++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999985
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.26 E-value=0.049 Score=53.06 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 494
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.24 E-value=0.035 Score=59.11 Aligned_cols=34 Identities=38% Similarity=0.618 Sum_probs=26.6
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+|.+++ .+--.++|+|++|+|||||+|.|+|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3565542 234578999999999999999999964
No 495
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.21 E-value=0.041 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
...+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788999999999999999754
No 496
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=93.16 E-value=0.039 Score=58.32 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999964
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.16 E-value=0.046 Score=53.85 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=24.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.+|..+.|.||+|+|||||.+.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998653
No 498
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.09 E-value=0.031 Score=57.22 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.+++|+|++|+||||+...|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999998763
No 499
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.05 E-value=0.046 Score=52.15 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.-+.|.||+|+|||||.++++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999865
No 500
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.05 E-value=0.053 Score=52.85 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=22.9
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..-+.|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345568999999999999999999753
Done!