BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044031
(468 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 241 bits (614), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 153/485 (31%), Positives = 238/485 (49%), Gaps = 47/485 (9%)
Query: 5 IALYPGPAFHHMISMVELGKLILQHRSDVSITILVPSMPLEESKTCSYINSISHRLNPII 64
+A+ P P H+I +VE K ++ H +++T ++ E ++ L I
Sbjct: 9 VAIIPSPGMGHLIPLVEFAKRLV-HLHGLTVTFVIAG----EGPPSKAQRTVLDSLPSSI 63
Query: 65 SFYYLPAIQM---PSETLSRADIAIESIKLNSS--NVFQALENXXXXXXXXXX----XXX 115
S +LP + + S T + I++ + N VF +
Sbjct: 64 SSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDA 123
Query: 116 XXXXXXYHPNIPTYTYFNSCASTLAAILYLPTLHNQITSSFKDHPSSLLFIPGLPPVKSS 175
+H +P Y ++ + A+ L+ L+LP L ++ F++ L+ +PG PV
Sbjct: 124 FDVAVEFH--VPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLM-LPGCVPVAGK 180
Query: 176 FMPEPVLDRQKPIYDFFLNYSTSLSKSNGIIINTFDFLEQQAIKAIVNGDCVTNGTTPPL 235
+P DR+ Y + L+ + ++ GI++NTF LE AIKA+ PP+
Sbjct: 181 DFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGL----DKPPV 236
Query: 236 HCIGPLIVDAKDRAGGVSDDVSSDCLTWLDSQPSGSVVFLCFGSRGTFSAPQLKEIAIGL 295
+ +GPL+ K A + S+CL WLD+QP GSV+++ FGS GT + QL E+A+GL
Sbjct: 237 YPVGPLVNIGKQEAKQTEE---SECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGL 293
Query: 296 ERSNQRFLWVVRNPSNAAEAE-------------LPEGFLERTKERGLVVKSWAPQSTIL 342
S QRFLWV+R+PS A + LP GFLERTK+RG V+ WAPQ+ +L
Sbjct: 294 ADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVL 353
Query: 343 GHESVGGFVTHCGWSSVVEAVTYGVPMIAWPLYAEQFLNSVALVQEMKVAMPMFLXXXXX 402
H S GGF+THCGW+S +E+V G+P+IAWPLYAEQ +N+V L ++++ A+
Sbjct: 354 AHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAAL--------R 405
Query: 403 XXXXXXXXXXXXXXXXXXXXLMMGSEGKALRERSLEMRMMAATAWNNNDGGSSFTAFSNL 462
LM G EGK +R + E++ A D G+S A S +
Sbjct: 406 PRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVL--KDDGTSTKALSLV 463
Query: 463 FDLWQ 467
W+
Sbjct: 464 ALKWK 468
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 133/400 (33%), Positives = 204/400 (51%), Gaps = 29/400 (7%)
Query: 9 PGPAFHHMISMVELGKLILQHRSDVSITILV---PSMPLEESKTCSYINSISHRLNPIIS 65
P P H+ S +E KL+ H ++ IT+ P MP +S YI S+ P I
Sbjct: 16 PAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADS----YIKSVLAS-QPQIQ 70
Query: 66 FYYLPAIQMPSETLSRAD-----IAIESIKLNSSNVFQALENXXXXXXXXXXXXXXXXXX 120
LP ++ P + L ++ +ES+ + + + +
Sbjct: 71 LIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDV 130
Query: 121 XYHPNIPTYTYFNSCASTLAAILYLPTLHNQITSSFKDHPSSLLFIPGLP-PVKSSFMPE 179
IP+Y + S L+ +L L + D LL IPG+ V S+ +P+
Sbjct: 131 GNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQVPSNVLPD 190
Query: 180 PVLDRQKPIYDFFLNYSTSLSKSNGIIINTFDFLEQQAIKAIVNGDCVTNGTTPPLHCIG 239
++ Y + + + GII+NTF LEQ +I A+ + D PP++ +G
Sbjct: 191 ACFNKDGG-YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD----EKIPPIYAVG 245
Query: 240 PLIVDAKDRAGGVSDDVSSD-CLTWLDSQPSGSVVFLCFGSRG-TFSAPQLKEIAIGLER 297
PL+ D K + D D L WLD QP SVVFLCFGS G +F Q++EIA+GL+
Sbjct: 246 PLL-DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKH 304
Query: 298 SNQRFLWVVRNPSNAAEAEL-PEGFLERTKERGL-VVKSWAPQSTILGHESVGGFVTHCG 355
S RFLW SN+AE ++ PEGFLE + G ++ WAPQ +L H+++GGFV+HCG
Sbjct: 305 SGVRFLW-----SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCG 359
Query: 356 WSSVVEAVTYGVPMIAWPLYAEQFLNSVALVQEMKVAMPM 395
W+S++E++ +GVP++ WP+YAEQ LN+ LV+E V + +
Sbjct: 360 WNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGL 399
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 133/400 (33%), Positives = 204/400 (51%), Gaps = 29/400 (7%)
Query: 9 PGPAFHHMISMVELGKLILQHRSDVSITILV---PSMPLEESKTCSYINSISHRLNPIIS 65
P P H+ S +E KL+ H ++ IT+ P MP +S YI S+ P I
Sbjct: 16 PAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADS----YIKSVLAS-QPQIQ 70
Query: 66 FYYLPAIQMPSETLSRAD-----IAIESIKLNSSNVFQALENXXXXXXXXXXXXXXXXXX 120
LP ++ P + L ++ +ES+ + + + +
Sbjct: 71 LIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDV 130
Query: 121 XYHPNIPTYTYFNSCASTLAAILYLPTLHNQITSSFKDHPSSLLFIPGLP-PVKSSFMPE 179
IP+Y + S L+ +L L + D LL IPG+ V S+ +P+
Sbjct: 131 GNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQVPSNVLPD 190
Query: 180 PVLDRQKPIYDFFLNYSTSLSKSNGIIINTFDFLEQQAIKAIVNGDCVTNGTTPPLHCIG 239
++ Y + + + GII+NTF LEQ +I A+ + D PP++ +G
Sbjct: 191 ACFNKDGG-YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD----EKIPPIYAVG 245
Query: 240 PLIVDAKDRAGGVSDDVSSD-CLTWLDSQPSGSVVFLCFGSRG-TFSAPQLKEIAIGLER 297
PL+ D K + D D L WLD QP SVVFLCFGS G +F Q++EIA+GL+
Sbjct: 246 PLL-DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKH 304
Query: 298 SNQRFLWVVRNPSNAAEAEL-PEGFLERTKERGL-VVKSWAPQSTILGHESVGGFVTHCG 355
S RFLW SN+AE ++ PEGFLE + G ++ WAPQ +L H+++GGFV+HCG
Sbjct: 305 SGVRFLW-----SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCG 359
Query: 356 WSSVVEAVTYGVPMIAWPLYAEQFLNSVALVQEMKVAMPM 395
W+S++E++ +GVP++ WP+YAEQ LN+ LV+E V + +
Sbjct: 360 WNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGL 399
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 167/357 (46%), Gaps = 55/357 (15%)
Query: 126 IPTYTYFNSCASTLAAILYLPTLHNQITSSFKDH--------PSSLLFIPGLPPVKSSFM 177
+P YF+S A +L +++ + + FKD + + +IPGL +F
Sbjct: 140 LPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGL----KNFR 195
Query: 178 PEPVLDRQKP------IYDFFLNYSTSLSKSNGIIINTFDFLEQQAIKAIVNGDCVTNGT 231
+ ++D + + +FF+ + ++K I++NTF+ LE I A+ + T
Sbjct: 196 LKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINAL-------SST 248
Query: 232 TPPLHCIGPL-----------IVDAKDRAGGVSDDVSSDCLTWLDSQPSGSVVFLCFGSR 280
P ++ IGPL +D+ D D ++CL WL+S+ GSVV++ FGS
Sbjct: 249 IPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKED---TECLDWLESKEPGSVVYVNFGST 305
Query: 281 GTFSAPQLKEIAIGLERSNQRFLWVVR-NPSNAAEAELPEGFLERTKERGLVVKSWAPQS 339
+ QL E A GL + FLW++R + F +RGL+ SW PQ
Sbjct: 306 TVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIA-SWCPQD 364
Query: 340 TILGHESVGGFVTHCGWSSVVEAVTYGVPMIAWPLYAEQFLNSVALVQEMKVAMPMFLXX 399
+L H S+GGF+THCGW+S E++ GVPM+ WP +A+Q + + E ++ M +
Sbjct: 365 KVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI---- 420
Query: 400 XXXXXXXXXXXXXXXXXXXXXXXLMMGSEGKALRERSLEMRMMAATAWNNNDGGSSF 456
++ G +GK ++++++E++ A N GG S+
Sbjct: 421 --------DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEE--NTRPGGCSY 467
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 16/224 (7%)
Query: 161 SSLLFIPGLPPVKSSFMPEPVL-DRQKPIYDFFLNYSTSLSKSNGIIINTFDFLEQQAIK 219
S+ +PG P +K+S +PE V+ D P L ++N + IN+F I
Sbjct: 174 KSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSF-----ATIH 228
Query: 220 AIVNGDCVTNGTTPPLHCIGPLIVDAKDRAGGVSDDVSSDCLTWLDSQPSGSVVFLCFGS 279
++ + N L +GP + R VSD+ CL WLD + SVV++ FGS
Sbjct: 229 PLIENEL--NSKFKLLLNVGPFNLTTPQRK--VSDE--HGCLEWLDQHENSSVVYISFGS 282
Query: 280 RGTFSAPQLKEIAIGLERSNQRFLWVVRNPSNAAEAELPEGFLERTKERGLVVKSWAPQS 339
T +L +A LE F+W R + +LP+GFLERTK +G +V +WAPQ
Sbjct: 283 VVTPPPHELTALAESLEECGFPFIWSFRG---DPKEKLPKGFLERTKTKGKIV-AWAPQV 338
Query: 340 TILGHESVGGFVTHCGWSSVVEAVTYGVPMIAWPLYAEQFLNSV 383
IL H SVG F+TH GW+SV+E + GVPMI+ P + +Q LN++
Sbjct: 339 EILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTI 382
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 156/339 (46%), Gaps = 32/339 (9%)
Query: 131 YFNSCASTLAAILYLPTLHNQI-TSSFKDHPSSLL-FIPGLPPVKSSFMPEP-VLDRQKP 187
++ + ++L+ +Y+ + +I S + LL FIPG+ V+ + E V
Sbjct: 139 FWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNS 198
Query: 188 IYDFFLN-YSTSLSKSNGIIINTFDFLEQQAIKAIVNGDCVTNGTTPPLHCIGPLIVDAK 246
++ L+ L K+ + IN+F+ L+ ++ + T P + I P V
Sbjct: 199 LFSRMLHRMGQVLPKATAVFINSFEELDD-SLTNDLKSKLKTYLNIGPFNLITPPPVVPN 257
Query: 247 DRAGGVSDDVSSDCLTWLDSQPSGSVVFLCFGSRGTFSAPQLKEIAIGLERSNQRFLWVV 306
++ CL WL + SVV++ FG+ T ++ ++ LE S F+W +
Sbjct: 258 ----------TTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSL 307
Query: 307 RNPSNAAEAELPEGFLERTKERGLVVKSWAPQSTILGHESVGGFVTHCGWSSVVEAVTYG 366
R+ A LPEGFLE+T+ G+VV WAPQ+ +L HE+VG FVTHCGW+S+ E+V G
Sbjct: 308 RD---KARVHLPEGFLEKTRGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGG 363
Query: 367 VPMIAWPLYAEQFLNSVALVQEMKVAMPMFLXXXXXXXXXXXXXXXXXXXXXXXXXLMMG 426
VP+I P + +Q LN + +++ + + ++
Sbjct: 364 VPLICRPFFGDQRLNGRMVEDVLEIGVRI-----------EGGVFTKSGLMSCFDQILSQ 412
Query: 427 SEGKALRERSLEMRMMAATAWNNNDGGSSFTAFSNLFDL 465
+GK LRE +R A A GSS F L DL
Sbjct: 413 EKGKKLRENLRALRETADRAVGPK--GSSTENFITLVDL 449
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 266 SQPSGSVVFLCFGSRGTFSAPQLKEIAIGLERSNQRFLWVVRNPSNAAEAELPEGFLERT 325
S +G VVF + + IA L + Q+ LW + P+ T
Sbjct: 18 SGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRF-------DGNKPDTLGLNT 70
Query: 326 KERGLVVKSWAPQSTILGHESVGGFVTHCGWSSVVEAVTYGVPMIAWPLYAEQ 378
+ + W PQ+ +LGH F+TH G + + EA+ +G+P + PL+A+Q
Sbjct: 71 R-----LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 332 VKSWAPQSTILGHESVGGFVTHCGWSSVVEAVTYGVPMIAWPLYAEQFLNSVALVQ 387
V W PQ IL S F+TH G S +EA++ VPM+A P AEQ +N+ +V+
Sbjct: 309 VHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE 362
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 332 VKSWAPQSTILGHESVGGFVTHCGWSSVVEAVTYGVPMIAWPLYAEQFLNSVALVQEMKV 391
V W PQ IL + FVTH G E + PMIA P +QF N+ ++Q + V
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA-DMLQGLGV 343
Query: 392 A 392
A
Sbjct: 344 A 344
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 332 VKSWAPQSTILGHESVGGFVTHCGWSSVVEAVTYGVPMIAWPLYAEQF 379
++SW PQ+ +L H + V H G + + A+ GVP +++P + F
Sbjct: 296 LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3U2P|A Chain A, Crystal Structure Of N-Terminal Three Extracellular
Domains Of Erbb4HER4
Length = 497
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 236 HCIGPLIVDAKDR--AGGVSDDVSSDCLTWLDSQPSGSVVFLC 276
C GP + D R AGG S +DC ++ SG+ V C
Sbjct: 195 RCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQC 237
>pdb|3U9U|E Chain E, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
pdb|3U9U|F Chain F, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
Length = 625
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 237 CIGPLIVDAKDR--AGGVSDDVSSDCLTWLDSQPSGSVVFLC 276
C GP + D R AGG S +DC ++ SG+ V C
Sbjct: 196 CYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQC 237
>pdb|2AHX|A Chain A, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
pdb|2AHX|B Chain B, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
Length = 617
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 237 CIGPLIVDAKDR--AGGVSDDVSSDCLTWLDSQPSGSVVFLC 276
C GP + D R AGG S +DC ++ SG+ V C
Sbjct: 197 CYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQC 238
>pdb|3U7U|A Chain A, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|B Chain B, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|C Chain C, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|D Chain D, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|E Chain E, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|F Chain F, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 615
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 236 HCIGPLIVDAKDR--AGGVSDDVSSDCLTWLDSQPSGSVVFLC 276
C GP + D R AGG S +DC ++ SG+ V C
Sbjct: 195 RCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQC 237
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 11 PAFHHMISMVELGKLILQHRSDVSITILVPSMPLEESKTCSYINS 55
P HM SM ++ KL++ +R +++I I + L+ S Y N
Sbjct: 16 PRGSHMASMKQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNE 60
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 11 PAFHHMISMVELGKLILQHRSDVSITILVPSMPLEESKTCSYINS 55
P HM SM ++ KL++ +R +++I I + L+ S Y N
Sbjct: 16 PRGSHMASMKQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNE 60
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 11 PAFHHMISMVELGKLILQHRSDVSITILVPSMPLEESKTCSYINS 55
P HM SM ++ KL++ +R +++I I + L+ S Y N
Sbjct: 16 PRGSHMASMKQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNE 60
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 11 PAFHHMISMVELGKLILQHRSDVSITILVPSMPLEESKTCSYINS 55
P HM SM ++ KL++ +R +++I I + L+ S Y N
Sbjct: 16 PRGSHMASMKQIKKLLVANRGEIAIRIFEAAAELDISTVAIYSNE 60
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 334 SWAPQSTILGHESVGGFVTHCGWSSVVEAVTYGVPMIAWPLYAEQFLNSVALVQEM 389
W P ++L H +TH +V+EA GVP++ P +A + S V E+
Sbjct: 287 QWIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIEL 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,334,311
Number of Sequences: 62578
Number of extensions: 461176
Number of successful extensions: 1207
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 21
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)