Your job contains 1 sequence.
>044036
VMSLLRSFKESLKPCSNFPSNFSQSSSVSQESSNDTLIIPRRPPKSSLAQQLQRLGETYN
FSLPQQNPETRREKAPVEKSNVFDDEEKEKEQEQEKFGRHQLGQFQFDHTGPFEPLVLSK
DGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVF
GKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEK
LEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIG
LTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQ
HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDL
PCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQR
KDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSY
SVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNL
VSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLS
NIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDNLFTSEIIESHEEQGQQQERHH
CTNQGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIV
NKQPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLARFM
GMDVFEFSKWILSATPSAREKLLQDYRKRKKIPKG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044036
(875 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2024198 - symbol:SWI2 "switch 2" species:3702 ... 2655 3.4e-299 2
ASPGD|ASPL0000017334 - symbol:AN3811 species:162425 "Emer... 1135 9.7e-118 2
UNIPROTKB|G4MNF9 - symbol:MGG_06945 "Helicase" species:24... 1131 1.8e-116 2
MGI|MGI:1923501 - symbol:Ercc6l2 "excision repair cross-c... 1130 1.3e-114 1
UNIPROTKB|G5E5P9 - symbol:LOC789977 "Uncharacterized prot... 1117 3.2e-113 1
UNIPROTKB|E2RGN3 - symbol:ERCC6L2 "Uncharacterized protei... 1113 8.4e-113 1
UNIPROTKB|F1PQX1 - symbol:ERCC6L2 "Uncharacterized protei... 1113 8.4e-113 1
UNIPROTKB|F1S4L1 - symbol:ERCC6L2 "Uncharacterized protei... 1097 4.2e-111 1
UNIPROTKB|Q5T890 - symbol:RAD26L "Putative DNA repair and... 1091 1.8e-110 1
ZFIN|ZDB-GENE-110411-274 - symbol:si:ch211-248d20.2 "si:c... 1084 1.0e-109 1
UNIPROTKB|F1NYG8 - symbol:F1NYG8 "Uncharacterized protein... 1057 7.2e-107 1
UNIPROTKB|E2QSK6 - symbol:ERCC6L "Uncharacterized protein... 444 2.4e-76 4
UNIPROTKB|Q03468 - symbol:ERCC6 "DNA excision repair prot... 440 2.1e-75 3
UNIPROTKB|F1SDX0 - symbol:ERCC6 "Uncharacterized protein"... 438 7.0e-75 3
TAIR|locus:2054011 - symbol:CHR8 "chromatin remodeling 8"... 445 1.7e-73 3
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 427 1.9e-73 3
UNIPROTKB|D3ZZZ1 - symbol:Ercc6 "Protein Ercc6" species:1... 429 1.9e-73 3
UNIPROTKB|E1BYA8 - symbol:ERCC6 "Uncharacterized protein"... 444 5.6e-73 4
DICTYBASE|DDB_G0281441 - symbol:ercc6 "DNA excision repai... 417 3.1e-72 2
POMBASE|SPCP25A2.02c - symbol:rhp26 "SNF2 family helicase... 394 2.2e-68 3
ZFIN|ZDB-GENE-060531-56 - symbol:ercc6l "excision repair ... 672 8.3e-67 2
UNIPROTKB|I3LFY4 - symbol:ERCC6L "Uncharacterized protein... 684 2.2e-66 1
UNIPROTKB|J9P3F5 - symbol:ERCC6L "Uncharacterized protein... 666 4.3e-66 2
RGD|1561537 - symbol:Ercc6l2 "excision repair cross-compl... 658 1.4e-64 1
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 388 1.4e-63 3
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 388 1.4e-63 3
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 389 1.4e-63 2
UNIPROTKB|A6QQR4 - symbol:ERCC6L "DNA excision repair pro... 398 2.7e-63 4
WB|WBGene00004298 - symbol:rad-54 species:6239 "Caenorhab... 403 6.0e-63 2
UNIPROTKB|F1PW14 - symbol:RAD54B "Uncharacterized protein... 367 3.1e-62 2
RGD|1565734 - symbol:Ercc6l "excision repair cross-comple... 387 4.6e-62 3
UNIPROTKB|E1BFL2 - symbol:ERCC6 "Uncharacterized protein"... 415 4.9e-62 4
TAIR|locus:2094083 - symbol:RAD54 "homolog of RAD54" spec... 389 7.4e-62 2
UNIPROTKB|A1L4Z4 - symbol:RAD54L "Uncharacterized protein... 390 8.2e-62 2
UNIPROTKB|Q9DG67 - symbol:RAD54B "DNA repair and recombin... 370 1.3e-61 2
UNIPROTKB|Q92698 - symbol:RAD54L "DNA repair and recombin... 388 2.3e-61 3
UNIPROTKB|F1MSA4 - symbol:RAD54B "Uncharacterized protein... 371 2.6e-61 2
UNIPROTKB|F1PJC9 - symbol:RAD54L "Uncharacterized protein... 387 2.9e-61 2
MGI|MGI:2654144 - symbol:Ercc6l "excision repair cross-co... 376 3.2e-61 3
UNIPROTKB|Q2NKX8 - symbol:ERCC6L "DNA excision repair pro... 388 3.4e-61 3
UNIPROTKB|F1S3V8 - symbol:RAD54L "Uncharacterized protein... 381 4.2e-61 2
POMBASE|SPAC15A10.03c - symbol:rad54 "DNA-dependent ATPas... 366 6.9e-61 2
UNIPROTKB|F1P5M3 - symbol:RAD54B "DNA repair and recombin... 366 9.7e-61 2
UNIPROTKB|F1RY50 - symbol:RAD54B "Uncharacterized protein... 363 2.3e-60 2
POMBASE|SPBC1826.01c - symbol:mot1 "TATA-binding protein ... 622 2.8e-60 2
MGI|MGI:894697 - symbol:Rad54l "RAD54 like (S. cerevisiae... 376 3.2e-60 2
UNIPROTKB|O12944 - symbol:RAD54L "DNA repair and recombin... 372 3.9e-60 2
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 377 4.5e-60 2
UNIPROTKB|F1NBD4 - symbol:RAD54L "DNA repair and recombin... 371 5.1e-60 2
UNIPROTKB|F1NX31 - symbol:RAD54L "DNA repair and recombin... 371 5.5e-60 2
UNIPROTKB|Q9Y620 - symbol:RAD54B "DNA repair and recombin... 370 9.9e-60 2
ZFIN|ZDB-GENE-060810-50 - symbol:rad54b "RAD54 homolog B ... 375 1.2e-59 2
ZFIN|ZDB-GENE-040426-968 - symbol:rad54l "RAD54-like (S. ... 380 2.0e-59 3
SGD|S000001934 - symbol:IRC5 "Putative ATPase containing ... 362 5.8e-59 2
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 355 5.9e-59 2
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 355 5.9e-59 2
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 363 6.4e-59 3
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 357 9.2e-59 3
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 371 2.0e-58 2
CGD|CAL0004359 - symbol:RDH54 species:5476 "Candida albic... 352 3.4e-58 2
FB|FBgn0002989 - symbol:okr "okra" species:7227 "Drosophi... 365 6.7e-58 2
ASPGD|ASPL0000027956 - symbol:AN10677 species:162425 "Eme... 348 9.3e-58 2
ASPGD|ASPL0000055935 - symbol:AN0855 species:162425 "Emer... 348 9.9e-58 2
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 348 1.1e-57 2
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 355 1.2e-57 3
UNIPROTKB|B4KHL5 - symbol:okr "DNA repair and recombinati... 370 1.2e-57 2
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 365 1.7e-57 3
UNIPROTKB|B4M9A8 - symbol:okr "DNA repair and recombinati... 370 1.7e-57 3
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 357 1.9e-57 2
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 350 2.3e-57 2
UNIPROTKB|Q29KH2 - symbol:okr "DNA repair and recombinati... 364 2.8e-57 2
UNIPROTKB|B4NXB8 - symbol:okr "DNA repair and recombinati... 365 2.8e-57 2
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 357 2.9e-57 3
UNIPROTKB|B4MX21 - symbol:okr "DNA repair and recombinati... 367 3.5e-57 2
UNIPROTKB|B3MMA5 - symbol:okr "DNA repair and recombinati... 364 3.9e-57 2
UNIPROTKB|B4GS98 - symbol:okr "DNA repair and recombinati... 364 5.9e-57 2
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 357 7.4e-57 2
UNIPROTKB|B4JCS7 - symbol:okr "DNA repair and recombinati... 358 8.5e-57 2
FB|FBgn0011604 - symbol:Iswi "Imitation SWI" species:7227... 348 1.2e-56 2
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 351 1.4e-56 2
UNIPROTKB|B3NAN8 - symbol:okr "DNA repair and recombinati... 357 1.4e-56 2
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 350 2.2e-56 3
UNIPROTKB|F5H493 - symbol:ERCC6 "DNA excision repair prot... 413 3.4e-56 3
ASPGD|ASPL0000068126 - symbol:cshA species:162425 "Emeric... 411 3.6e-56 3
UNIPROTKB|H0YJG4 - symbol:CHD8 "Chromodomain-helicase-DNA... 338 3.9e-56 2
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 345 4.3e-56 2
WB|WBGene00002169 - symbol:isw-1 species:6239 "Caenorhabd... 353 5.7e-56 2
POMBASE|SPAC1250.01 - symbol:snf21 "ATP-dependent DNA hel... 354 8.1e-56 2
MGI|MGI:1915308 - symbol:Chd1l "chromodomain helicase DNA... 343 8.6e-56 2
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 347 9.0e-56 2
UNIPROTKB|F1NCD0 - symbol:ERCC6L "Uncharacterized protein... 373 9.0e-56 3
CGD|CAL0002614 - symbol:orf19.4502 species:5476 "Candida ... 596 9.2e-56 3
ASPGD|ASPL0000041040 - symbol:AN9077 species:162425 "Emer... 350 1.6e-55 3
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 333 2.4e-55 3
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 351 2.5e-55 2
RGD|1311935 - symbol:Chd1l "chromodomain helicase DNA bin... 339 3.1e-55 2
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 339 3.2e-55 2
ZFIN|ZDB-GENE-030131-6320 - symbol:chd8 "chromodomain hel... 341 3.5e-55 2
DICTYBASE|DDB_G0271052 - symbol:snf2b "SNF2-related prote... 346 3.6e-55 3
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 342 3.8e-55 4
WARNING: Descriptions of 471 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 2655 (939.7 bits), Expect = 3.4e-299, Sum P(2) = 3.4e-299
Identities = 534/799 (66%), Positives = 614/799 (76%)
Query: 2 MSLLRSFKESLKPCXXXXXXXXXXXXXXXXXXXDTLIIPRRPPKSSLAQQLQR---LGET 58
MSLL +FKE+LKPC P + S +L L
Sbjct: 1 MSLLHTFKETLKPCGSFPSSSSLRVSSTQELEPSRK--PPKSSLSQQLLRLDDSYFLPSK 58
Query: 59 YNFSLPQQNPETRREKAPVEKSNV-FDDXXXXXXXXXXX-FGRHQLGQFQFDHTGPFEPL 116
+ + + E K N+ FD+ FGR L + +FD++GP+EPL
Sbjct: 59 HESKISKTQVEDFDHNEDDHKRNIKFDEEEVDEDDERSIEFGRPGLSRAEFDYSGPYEPL 118
Query: 117 VLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFL 176
+LS GE PII VPASINCRLLEHQREGVKF+Y LYKN HGGILGDDMGLGKTIQTIAFL
Sbjct: 119 MLSSIGEIPIIHVPASINCRLLEHQREGVKFMYNLYKNNHGGILGDDMGLGKTIQTIAFL 178
Query: 177 AAVFGKD-ESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTF-NVSIYHGPNR 234
AAV+GKD ++ +S +L+ +K G VLIICPSS+I NWE EFSRW++F VS+YHG NR
Sbjct: 179 AAVYGKDGDAGESCLLESDK----GPVLIICPSSIIHNWESEFSRWASFFKVSVYHGSNR 234
Query: 235 DMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELK 294
DMILEKL+A GVEVL+TSFD++RI G +LS +NWEIVI DEAHRLKNEKSKLY ACLE+K
Sbjct: 235 DMILEKLKARGVEVLVTSFDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIK 294
Query: 295 TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI 354
T+ RIGLTGT+MQNKI EL+NLF+WVAPGSLGTREHFR+FYDEPLK GQR TAPERF++I
Sbjct: 295 TKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQI 354
Query: 355 ADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQC 414
AD+RKQHL ++LRKY+LRRTKEETIGHLMMGKEDNVVFC MS LQ+R Y+R++QLPEIQC
Sbjct: 355 ADKRKQHLGSLLRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQRMIQLPEIQC 414
Query: 415 LINKDLPCSCGSPLTQVECCKRL------------DNLDGCDSCPFCLVLPCLVKLQQIS 462
L+NKD PC+CGSPL Q ECC+R+ DN DGCDSCPFCLVLPCL+KLQQIS
Sbjct: 415 LVNKDNPCACGSPLKQSECCRRIVPDGTIWSYLHRDNHDGCDSCPFCLVLPCLMKLQQIS 474
Query: 463 NHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALE 522
NHLELIKPNP+DEP+KQ+KDAE S VFG DIDL+GG + ++SF+ LSDVK CGKMRALE
Sbjct: 475 NHLELIKPNPKDEPEKQKKDAEFVSTVFGTDIDLLGGISASKSFMDLSDVKHCGKMRALE 534
Query: 523 KLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSP 582
KLM SW SKGDKILLFSYSVRMLDILEKFLIRKGYSF+RLDGSTP+NLRQSLVDDFN+SP
Sbjct: 535 KLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASP 594
Query: 583 SKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642
SKQVFLIST+AGGLGLNLVSANRVVIFDPNWNP+ DLQAQDRSFR+GQKRHV+VFRLLSA
Sbjct: 595 SKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSA 654
Query: 643 GSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDNLFT 702
GSLEELVYTRQVYKQQLSNIAV+GK+E RYFEGVQDCKEFQGELFGI NLFRDLSD LFT
Sbjct: 655 GSLEELVYTRQVYKQQLSNIAVAGKMETRYFEGVQDCKEFQGELFGISNLFRDLSDKLFT 714
Query: 703 XXXXXXXXXXXXXXXRHHCTNQGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSK 762
+ LET + S+D + S PEM K
Sbjct: 715 SDIVELHRDSNIDENKKRSL------LETGV--SEDEKE-----EEVMCSYKPEM---EK 758
Query: 763 PLLEDMGIVYAHRNDDIVN 781
P+L+D+GIVYAHRN+DI+N
Sbjct: 759 PILKDLGIVYAHRNEDIIN 777
Score = 241 (89.9 bits), Expect = 3.4e-299, Sum P(2) = 3.4e-299
Identities = 60/153 (39%), Positives = 92/153 (60%)
Query: 729 LETHIVSSKDSN---TLLSTG-SKTRKSSD------PEMARTSKPLLEDMGIVYAHRNDD 778
+E H S+ D N +LL TG S+ K + PEM KP+L+D+GIVYAHRN+D
Sbjct: 718 VELHRDSNIDENKKRSLLETGVSEDEKEEEVMCSYKPEM---EKPILKDLGIVYAHRNED 774
Query: 779 IVNKQPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLAR 838
I+N G + S Q L+ K++ C++ ++ +S++++K +Y +LA
Sbjct: 775 IINI--G---ETTTSTSQRLNGDGNSADRKKKKRKGCSEEEDMSSSNREQKREKYKMLAE 829
Query: 839 FMGMDVFEFSKWILSATPSAREKLLQDYRKRKK 871
F GM++ EFS+W+LSA+P REKLLQD+ +R K
Sbjct: 830 FKGMEILEFSRWVLSASPFDREKLLQDFLERVK 862
>ASPGD|ASPL0000017334 [details] [associations]
symbol:AN3811 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_661415.1
ProteinModelPortal:Q5B6L9 EnsemblFungi:CADANIAT00004901
GeneID:2873228 KEGG:ani:AN3811.2 HOGENOM:HOG000183446 OMA:CRIGLTG
OrthoDB:EOG4R539X Uniprot:Q5B6L9
Length = 1016
Score = 1135 (404.6 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 245/578 (42%), Positives = 347/578 (60%)
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGK--DESS 186
+PA I L +Q EG FL++L+ + GGILGDDMGLGKT+Q IAFL A +GK DE
Sbjct: 237 IPAPIAQWLRPYQVEGAAFLHQLFVYQKGGILGDDMGLGKTVQVIAFLTAAYGKTGDERD 296
Query: 187 DSTILKDNKVDKKGY---VLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEA 243
D + K + + + LIICP ++I+NW+ E SRW ++ Y G N+D++L ++
Sbjct: 297 DKRMRKMRRSEGDLWYPRTLIICPGTLIENWKSEMSRWGWWHFDAYQGSNKDLVLHAAKS 356
Query: 244 CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303
VE+LIT++ +Y + ++ V+W+ VI DE H +K S+ A ++ RIGLTG
Sbjct: 357 GRVEILITTYSTYLKNRDAVNMVDWDCVIADECHAIKERSSETTKAMNDINALCRIGLTG 416
Query: 304 TIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363
T +QN+ EL+ L +W PG +G ++ EPLK GQ A + +R A + LV
Sbjct: 417 TAIQNRYEELWTLLNWTNPGRMGPVTTWKSHVSEPLKIGQSHDATVQQLRRARVTAKKLV 476
Query: 364 A-VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPC 422
+L ++ LRR K I + K D VVFC ++D Q +AY RLL I + C
Sbjct: 477 ENLLPQFFLRRMKT-LIADQLPKKIDRVVFCPLTDTQAQAYERLLDSDIIHYIKTSTNKC 535
Query: 423 SCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKD 482
CGS CC + L V P + LQ++SNHL ++ P D +KQ KD
Sbjct: 536 DCGSGRKAGWCCHQY--LPSGRRWQ-TYVFPAMQILQKLSNHLAILIPQSTDSFEKQEKD 592
Query: 483 AELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSV 542
E+ PD + +S I +D + CGK + L KL+ W GDK+L+FS+SV
Sbjct: 593 KEMLEIAV-PD-EWERLYRTRDSIINYADAEYCGKWKVLRKLLKWWHGNGDKVLVFSHSV 650
Query: 543 RMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVS 602
R+L +L+ Y+ S LDGS R +VD+FNS P + VFLISTRAGG+GLN+ S
Sbjct: 651 RLLKMLQMLFNHTSYNVSYLDGSMTYETRAKVVDEFNSDPRQFVFLISTRAGGVGLNITS 710
Query: 603 ANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNI 662
AN+VVI DPNWNP+ DLQAQDR++R GQ R+V VFRL+SAG++EE+VY RQ+YKQQ +NI
Sbjct: 711 ANKVVIVDPNWNPSHDLQAQDRAYRIGQTRNVEVFRLISAGTIEEIVYARQIYKQQQANI 770
Query: 663 AVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDNL 700
+ E+RYF+GVQ+ K+ +GE+FG+ N+F +DN+
Sbjct: 771 GYNASSERRYFKGVQEKKDQKGEIFGLQNIFEYQNDNI 808
Score = 45 (20.9 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 750 RKSSDPEMARTSKPLLEDMGIVYAHRNDDIV-NKQPGFQRKKEESIPQD 797
++S+ P + +L G+ Y H N+++V + + Q ++ + +D
Sbjct: 877 QQSTTPSKHDPIQAILAGAGVEYTHLNNEVVGSSKVEEQLSRQAQLAED 925
>UNIPROTKB|G4MNF9 [details] [associations]
symbol:MGG_06945 "Helicase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:CM001231 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003709685.1 ProteinModelPortal:G4MNF9
EnsemblFungi:MGG_06945T0 GeneID:2685118 KEGG:mgr:MGG_06945
Uniprot:G4MNF9
Length = 1103
Score = 1131 (403.2 bits), Expect = 1.8e-116, Sum P(2) = 1.8e-116
Identities = 247/588 (42%), Positives = 352/588 (59%)
Query: 112 PFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQ 171
P+E + L + +PA I L ++Q +GV F+++ + + G ILGDDMGLGKT+Q
Sbjct: 173 PYEDVELERSAGI----IPAPIAQYLRDYQVDGVSFMHEAFVYQRGCILGDDMGLGKTVQ 228
Query: 172 TIAFLAAVFGK--DESSDSTILKDNKVDKKGY-VLIICPSSVIQNWEIEFSRWSTFNVSI 228
AFL A FGK D + K ++ ++ Y VL++CPSSV++NW E +RW + V
Sbjct: 229 VAAFLTAAFGKTGDFRDSKRMRKVKRLGRRYYKVLVVCPSSVMENWRQELARWGWWKVES 288
Query: 229 YHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYM 288
YHGP +D +L+ ++ +EV++T+ +YR+ ++ V+W+ V+VDE H +K +S++
Sbjct: 289 YHGPGKDDVLDTAKSGRLEVMLTTPATYRLQKERVNTVSWDAVVVDECHNIKERRSEITK 348
Query: 289 ACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAP 348
A E+ RIGLTGT +QNK EL+ L +W PG GT ++ PL GQ A
Sbjct: 349 AMTEVNALCRIGLTGTAIQNKYEELWTLLNWTNPGRFGTFGEWKTSISRPLTLGQSHNAT 408
Query: 349 ERFIRIADERKQHLVA-VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
+ + +A + + LV +L Y LRR K I H + K D VVFC ++DLQ AY R +
Sbjct: 409 LQELSMARKTAKKLVQNLLPDYFLRRMKS-LIAHQLPKKRDRVVFCPLTDLQTTAYERFI 467
Query: 408 QLPEIQCLINKDLPCSCGSPLTQVEC-CKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLE 466
E++ + C CGS + C K L+ DG LV PC++ LQ ++NHL
Sbjct: 468 ASEEVELVRRSHELCDCGSGEKRGHCHYKHLE--DG--RTWNMLVFPCILTLQNLANHLT 523
Query: 467 LIKPNPRDEPDKQRKD-AELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525
LI P + DK K A L V PD ++ I + D + CGK R L+ L+
Sbjct: 524 LIVPKIGEPGDKAEKSLARLRICV--PDKWEQLYKLRDSPLIQM-DPEFCGKWRVLKDLL 580
Query: 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ 585
W GDK+L+FS+SV++L +L YS+S LDGS RQ +VDDFNS P +
Sbjct: 581 KFWEGNGDKVLVFSHSVKLLQVLRALFQTTHYSYSYLDGSLAIEERQQIVDDFNSDPQQF 640
Query: 586 VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645
VFLIST+AGG+GLN+ SAN+VVIFDP+WNP+ DLQAQDR++R GQ R V VFRL+S G++
Sbjct: 641 VFLISTKAGGVGLNITSANKVVIFDPHWNPSWDLQAQDRAYRIGQTRDVDVFRLVSQGTI 700
Query: 646 EELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLF 693
EE+VY RQ+YKQQ +NI + E+RYF GVQ +GE+FG+ N+F
Sbjct: 701 EEIVYARQIYKQQQANIGYNASNERRYFTGVQQDNSRKGEIFGLENIF 748
Score = 37 (18.1 bits), Expect = 1.8e-116, Sum P(2) = 1.8e-116
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 764 LLEDMGIVYAHRNDDIV 780
+L G+ Y H N ++V
Sbjct: 841 ILSSAGVGYTHDNAEVV 857
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 240/588 (40%), Positives = 357/588 (60%)
Query: 118 LSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA 177
LS+DG+ +P +IN L ++QREG +FLY+ Y G ILGDDMGLGKTIQ I+FLA
Sbjct: 107 LSEDGD----SIPYTINRYLRDYQREGAQFLYRHYIEGRGCILGDDMGLGKTIQVISFLA 162
Query: 178 AVFGK-------DESSDSTILKDNKVDK----KGYVLIICPSSVIQNWEIEFSRWSTFNV 226
AV K + + +LK K K LI+ P SV+ NW+ E W F V
Sbjct: 163 AVLHKKGTREDIENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDTWGYFRV 222
Query: 227 SIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKL 286
++ HG +D L +L+ E+ +T++++ R+ L+ + W +IVDEAHR+KN K+++
Sbjct: 223 TVLHGSKKDNELLRLKQRKCEIALTTYETLRLCLEELNSLEWSAIIVDEAHRIKNPKARV 282
Query: 287 YMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLT 346
+K + RIGLTGT++QN + EL+ + DW PG LG+R HF++ + +P++HGQR T
Sbjct: 283 TEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHT 342
Query: 347 APERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
A +R + + L + + LRRTK G L KED +V+C+++D QK Y+ +
Sbjct: 343 ATKRELATGRKAMHRLAKKMSGWFLRRTKTLIKGQLPK-KEDRMVYCSLTDFQKAVYQTV 401
Query: 407 LQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLE 466
L+ ++ ++ PC+CGS + +CC + N G CL L LQ+++NH+
Sbjct: 402 LETEDVALILTSSQPCTCGSGQKRRKCCYKT-NSRGDTVRTLCLSY--LTVLQKVANHVA 458
Query: 467 LIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMY 526
L++ + ++ + VF D V +++ +F LSD K GKM+ L++L+
Sbjct: 459 LLQAASTSK-HQETVIKRICDRVFSRFPDFVQ-KSKDAAFETLSDPKYSGKMKVLQQLLN 516
Query: 527 SWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQV 586
+ + DK+LLFS+S ++LD+L+++ + G + RLDGST S R +V +FNSS +
Sbjct: 517 HFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSSQDVNI 576
Query: 587 FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLE 646
L+ST AGGLGLN V AN V++FDP WNPA DLQA DR++R GQ R V V RL+S G++E
Sbjct: 577 CLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVE 636
Query: 647 ELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFR 694
E++Y RQVYKQQL + V + KRYFE VQ KE +GELFG+ NLF+
Sbjct: 637 EIMYLRQVYKQQLHCVVVGSENAKRYFEAVQGSKEHRGELFGVHNLFK 684
>UNIPROTKB|G5E5P9 [details] [associations]
symbol:LOC789977 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:DAAA02024017
EMBL:DAAA02024018 EMBL:DAAA02024019 EMBL:DAAA02024020
EMBL:DAAA02024021 EMBL:DAAA02024022 Ensembl:ENSBTAT00000027486
Uniprot:G5E5P9
Length = 908
Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
Identities = 240/591 (40%), Positives = 356/591 (60%)
Query: 115 PLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIA 174
P LS++G+ +P +IN L ++QREG +FLY + G ILGDDMGLGKT+Q I+
Sbjct: 43 PFQLSENGD----SIPYTINRYLRDYQREGAQFLYGHFIQGRGCILGDDMGLGKTVQVIS 98
Query: 175 FLAAVFGK-------DESSDSTILKDNKVDK----KGYVLIICPSSVIQNWEIEFSRWST 223
FLAAV GK + + +L++ K D K LI+ P SV+ NW+ E W
Sbjct: 99 FLAAVLGKKGTREDIENNMPEFLLRNMKKDPPSTAKKMFLIVAPLSVLYNWKDELDTWGY 158
Query: 224 FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283
F V+I HG +D L +++ E+ +T++++ R+ L+ + W VIVDEAHR+KN K
Sbjct: 159 FRVTILHGNKKDSELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPK 218
Query: 284 SKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQ 343
+++ L+ RIGLTGTI+QN + EL+ + DW PG LG+R HF++ + +P++HGQ
Sbjct: 219 ARVTEIMKALRCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQ 278
Query: 344 RLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
R TA +R + + Q L + + LRRTK I + KED +V+C+++D QK Y
Sbjct: 279 RHTATKRELATGRKAMQRLARKMSGWFLRRTKT-LIKDQLPKKEDRMVYCSLTDFQKAVY 337
Query: 404 RRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISN 463
+ +L+ ++ ++ PC+C S + CC + N G ++ L L LQ+++N
Sbjct: 338 QTVLETEDVSLILQSSEPCTCNSGQKRRNCCYKT-NSQG-ETVK-TLYFSYLAVLQKVAN 394
Query: 464 HLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEK 523
H+ L++ ++ + VF D V +++ +F LSD K GKM+ L++
Sbjct: 395 HVALLQTASTSR-QQETLIKRICDQVFSRFPDFVQ-KSKDAAFETLSDPKYSGKMKVLQQ 452
Query: 524 LMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPS 583
L+ DK+LLFS+S ++LD+L+++ + G + RLDGST S R +V +FNS+
Sbjct: 453 LLNHCRKNKDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERIKIVKEFNSTQD 512
Query: 584 KQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643
+ L+ST AGGLGLN V AN VV+FDP WNPA DLQA DR++R GQ R V V RL+S G
Sbjct: 513 VNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLG 572
Query: 644 SLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFR 694
++EE++Y RQVYKQQL + V + KRYFE VQ KE QGELFG+ NLF+
Sbjct: 573 TVEEIMYLRQVYKQQLHCVVVGSENAKRYFEAVQGSKEHQGELFGVYNLFK 623
>UNIPROTKB|E2RGN3 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001890 Uniprot:E2RGN3
Length = 925
Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
Identities = 240/589 (40%), Positives = 355/589 (60%)
Query: 118 LSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA 177
LS DG+ +P +IN L ++QREG +FLY + G ILGDDMGLGKT+Q I+FLA
Sbjct: 46 LSADGD----SIPYTINRYLRDYQREGAQFLYAHFIQGKGCILGDDMGLGKTVQVISFLA 101
Query: 178 AVFGK-------DESSDSTILKDNKVDK-----KGYVLIICPSSVIQNWEIEFSRWSTFN 225
AV K + + +L+ K + K LI+ P SV+ NW E W F
Sbjct: 102 AVLHKKGTREDIENNMPEFLLRSMKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTWGYFR 161
Query: 226 VSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSK 285
V+I HG +D L +++ E+ +T++++ R+ L+ + W VIVDEAH++KN K++
Sbjct: 162 VTILHGNKKDNELVRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHKIKNPKAR 221
Query: 286 LYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRL 345
+ LK RIGLTGTI+QN + EL+ + DW PG LG+R HF++ + +P++HGQR
Sbjct: 222 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRH 281
Query: 346 TAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRR 405
TA +R + + Q L ++ + LRRTK I + KED +V+C+++D QK Y+
Sbjct: 282 TATKRELATGRKAMQRLAKMMSGWFLRRTKT-LIKDQLPKKEDRMVYCSLTDFQKAVYQT 340
Query: 406 LLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHL 465
+L+ ++ ++ PCSC S + CC + N G ++ L L LQ+++NH+
Sbjct: 341 VLETKDVTLILQSSEPCSCSSGRKRRNCCYKT-NSHG-ETVK-TLYFSYLAVLQKVANHV 397
Query: 466 ELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525
L++ + ++ + VF D V +++ SF LSD K GKM+ L++L+
Sbjct: 398 ALLQ-SASTSKQQETLIKRICDQVFSKFPDFVQ-KSKDASFETLSDPKYSGKMKVLQQLL 455
Query: 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ 585
DKILLFS+S ++LD+L+++ + G+ + RLDGST S R +V +FNS+
Sbjct: 456 NHCRKNKDKILLFSFSTKLLDVLQQYCMAAGFDYRRLDGSTKSEERIKIVKEFNSTQDVN 515
Query: 586 VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645
+ L+ST AGG+GLN V AN VV+FDP WNPA DLQA DR++R GQ R V VFRL+S G++
Sbjct: 516 ICLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVFRLISLGTV 575
Query: 646 EELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFR 694
EE++Y RQVYKQQL + V + KRYFE VQ KE +GELFG+ NLF+
Sbjct: 576 EEIMYLRQVYKQQLHCVVVGSENAKRYFEAVQGSKEHRGELFGVYNLFK 624
>UNIPROTKB|F1PQX1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001906 OMA:QSSQPCT
Uniprot:F1PQX1
Length = 995
Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
Identities = 240/589 (40%), Positives = 355/589 (60%)
Query: 118 LSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA 177
LS DG+ +P +IN L ++QREG +FLY + G ILGDDMGLGKT+Q I+FLA
Sbjct: 108 LSADGD----SIPYTINRYLRDYQREGAQFLYAHFIQGKGCILGDDMGLGKTVQVISFLA 163
Query: 178 AVFGK-------DESSDSTILKDNKVDK-----KGYVLIICPSSVIQNWEIEFSRWSTFN 225
AV K + + +L+ K + K LI+ P SV+ NW E W F
Sbjct: 164 AVLHKKGTREDIENNMPEFLLRSMKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTWGYFR 223
Query: 226 VSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSK 285
V+I HG +D L +++ E+ +T++++ R+ L+ + W VIVDEAH++KN K++
Sbjct: 224 VTILHGNKKDNELVRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHKIKNPKAR 283
Query: 286 LYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRL 345
+ LK RIGLTGTI+QN + EL+ + DW PG LG+R HF++ + +P++HGQR
Sbjct: 284 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRH 343
Query: 346 TAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRR 405
TA +R + + Q L ++ + LRRTK I + KED +V+C+++D QK Y+
Sbjct: 344 TATKRELATGRKAMQRLAKMMSGWFLRRTKT-LIKDQLPKKEDRMVYCSLTDFQKAVYQT 402
Query: 406 LLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHL 465
+L+ ++ ++ PCSC S + CC + N G ++ L L LQ+++NH+
Sbjct: 403 VLETKDVTLILQSSEPCSCSSGRKRRNCCYKT-NSHG-ETVK-TLYFSYLAVLQKVANHV 459
Query: 466 ELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525
L++ + ++ + VF D V +++ SF LSD K GKM+ L++L+
Sbjct: 460 ALLQ-SASTSKQQETLIKRICDQVFSKFPDFVQ-KSKDASFETLSDPKYSGKMKVLQQLL 517
Query: 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ 585
DKILLFS+S ++LD+L+++ + G+ + RLDGST S R +V +FNS+
Sbjct: 518 NHCRKNKDKILLFSFSTKLLDVLQQYCMAAGFDYRRLDGSTKSEERIKIVKEFNSTQDVN 577
Query: 586 VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645
+ L+ST AGG+GLN V AN VV+FDP WNPA DLQA DR++R GQ R V VFRL+S G++
Sbjct: 578 ICLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVFRLISLGTV 637
Query: 646 EELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFR 694
EE++Y RQVYKQQL + V + KRYFE VQ KE +GELFG+ NLF+
Sbjct: 638 EEIMYLRQVYKQQLHCVVVGSENAKRYFEAVQGSKEHRGELFGVYNLFK 686
>UNIPROTKB|F1S4L1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:CU855584
Ensembl:ENSSSCT00000011974 Uniprot:F1S4L1
Length = 928
Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
Identities = 239/586 (40%), Positives = 353/586 (60%)
Query: 118 LSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA 177
LS+DG +P +IN L ++QREG +FLY + G ILGDDMGLGKT+Q I+FLA
Sbjct: 46 LSEDGA----SIPYTINRYLRDYQREGAQFLYGHFIQGRGCILGDDMGLGKTVQVISFLA 101
Query: 178 AVFGKD---ESSDSTI------LKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI 228
AV GK E ++ + KD + +KK + LI+ P SV+ NW E W F V+I
Sbjct: 102 AVLGKKGTREDIENNMPEFLLRTKDGRREKKLF-LIVAPLSVLYNWRDELDTWGYFRVTI 160
Query: 229 YHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYM 288
HG +D L +++ E+ +T++++ R+ L+ + W VIVDEAHR+KN K+++
Sbjct: 161 LHGNKKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARITE 220
Query: 289 ACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAP 348
LK RIGLTGTI+QN + EL+ + DW PG LG+ HF++ + +P++HGQR TA
Sbjct: 221 VMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSEIHFKKHFSDPVEHGQRHTAT 280
Query: 349 ERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
+R + + Q L + + LRRTK I + KED +V+C+++D QK Y+ +L+
Sbjct: 281 KRELATGRKAMQRLAIKMSGWFLRRTKI-LIKDQLPKKEDRMVYCSLTDFQKAVYQTVLE 339
Query: 409 LPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELI 468
++ ++ PC C S + CC + N G +S L L LQ+++NH+ L+
Sbjct: 340 TEDVSLILQSSEPCPCSSGQKRRNCCYKT-NSHG-ESVK-TLYFSYLAVLQKVANHVALL 396
Query: 469 KPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSW 528
+ + ++ + VF D V +++ +F LSD K GKM+ L++L+
Sbjct: 397 QAASTSK-QQETLIKRICDQVFSRFPDFVQ-KSKDAAFETLSDPKYSGKMKVLQQLLNHC 454
Query: 529 ASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFL 588
DK+LLFS+S ++LD+L+++ + G + RLDGST S R +V +FNS+ + L
Sbjct: 455 RKNKDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERIKIVKEFNSTQDVNICL 514
Query: 589 ISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEEL 648
+ST AGGLGLN V AN VV+FDP WNPA DLQA DR++R GQ R V V RL+S G++EE+
Sbjct: 515 VSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEI 574
Query: 649 VYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFR 694
+Y RQ+YKQQL + V + KRY E VQ K+ QGELFG+ NLF+
Sbjct: 575 MYLRQLYKQQLHCVVVGSENAKRY-EAVQGSKKHQGELFGVYNLFK 619
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
Identities = 237/589 (40%), Positives = 354/589 (60%)
Query: 118 LSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA 177
LS +G+ +P +IN L ++QREG +FLY Y + G ILGDDMGLGKT+Q I+FLA
Sbjct: 119 LSDNGD----SIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLA 174
Query: 178 AVFGK-------DESSDSTILKDNKVDK-----KGYVLIICPSSVIQNWEIEFSRWSTFN 225
AV K + + +L+ K + K LI+ P SV+ NW+ E W F
Sbjct: 175 AVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFR 234
Query: 226 VSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSK 285
V++ HG +D L +++ E+ +T++++ R+ L+ + W VIVDEAHR+KN K++
Sbjct: 235 VTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKAR 294
Query: 286 LYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRL 345
+ LK RIGLTGTI+QN + EL+ + DW PG LG+ +F++ + +P++HGQR
Sbjct: 295 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRH 354
Query: 346 TAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRR 405
TA +R + + Q L + + LRRTK I + KED +V+C+++D QK Y+
Sbjct: 355 TATKRELATGRKAMQRLAKKMSGWFLRRTKT-LIKDQLPKKEDRMVYCSLTDFQKAVYQT 413
Query: 406 LLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHL 465
+L+ ++ ++ PC+C S + CC + N G ++ L L L LQ+++NH+
Sbjct: 414 VLETEDVTLILQSSEPCTCRSGQKRRNCCYKT-NSHG-ETVK-TLYLSYLTVLQKVANHV 470
Query: 466 ELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525
L++ + ++ + VF D V +++ +F LSD K GKM+ L++L+
Sbjct: 471 ALLQAASTSK-QQETLIKRICDQVFSRFPDFVQ-KSKDAAFETLSDPKYSGKMKVLQQLL 528
Query: 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ 585
DK+LLFS+S ++LD+L+++ + G + RLDGST S R +V +FNS+
Sbjct: 529 NHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVN 588
Query: 586 VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645
+ L+ST AGGLGLN V AN VV+FDP WNPA DLQA DR++R GQ R V V RL+S G++
Sbjct: 589 ICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTV 648
Query: 646 EELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFR 694
EE++Y RQ+YKQQL + V + KRYFE VQ KE QGELFGI NLF+
Sbjct: 649 EEIMYLRQIYKQQLHCVVVGSENAKRYFEAVQGSKEHQGELFGIHNLFK 697
>ZFIN|ZDB-GENE-110411-274 [details] [associations]
symbol:si:ch211-248d20.2 "si:ch211-248d20.2"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-110411-274
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:CR376747 IPI:IPI00994578 RefSeq:XP_689596.5 UniGene:Dr.83737
Ensembl:ENSDART00000122774 Ensembl:ENSDART00000125173 GeneID:553504
KEGG:dre:553504 NextBio:20880249 Uniprot:F1QJP0
Length = 1269
Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
Identities = 235/598 (39%), Positives = 354/598 (59%)
Query: 111 GPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTI 170
GP E +L+ ++VP +IN L ++QREG+KF+Y+ Y G ILGDDMGLGKT+
Sbjct: 38 GPSEAFLLAGSD----VKVPYTINRYLRDYQREGIKFIYQNYAKSRGCILGDDMGLGKTV 93
Query: 171 QTIAFLAAVF---G--KD-ESSDSTILKDNKVDKK--GYVLIICPSSVIQNWEIEFSRWS 222
Q I FLAAV G KD E++ L K ++ +I+ P SV+ NW+ E W
Sbjct: 94 QVIGFLAAVLQKTGTWKDVENNRPQFLLSQKPSERVQKVFVIVAPLSVLYNWKDELDTWG 153
Query: 223 TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNE 282
F V + HG +D L +++ E+ +T++++ R+ + +NW VIVDEAH++KN
Sbjct: 154 HFRVVVVHGVRKDEELARVQRGRCEIALTTYETLRLCLDQFNSINWAAVIVDEAHKIKNH 213
Query: 283 KSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG 342
KSK+ A +++ + RIGLTGTI+QN + EL+ + +W P LG+ F+ + +P++ G
Sbjct: 214 KSKITQAVKQMRCKVRIGLTGTILQNNLEELWCVMNWAVPRCLGSLGAFKNRFSDPIEKG 273
Query: 343 QRLTAPERFIRIADERK--QHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQK 400
Q+ T +R +A+ RK Q L L ++ LRRTK I + K+D VV+C+++D Q+
Sbjct: 274 QKHTVTKR--ALAEGRKAVQELAKKLSRWFLRRTKS-LISDQLPKKDDRVVYCSLTDFQR 330
Query: 401 RAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQ 460
YR +L ++ ++ C C S + +CC +L N DG L L L++
Sbjct: 331 TVYRAVLDSDDVTLMLQSSGKCPCSSGRPRKKCCYKL-NADGVPVRH--LYFSYLAILRK 387
Query: 461 ISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRA 520
++NH+ L++ +++ + VF D + +F +SD GKM+
Sbjct: 388 VANHVALLQSKDGTSKKQEKYVTTICEQVFRKFPDFTE-RCKQAAFEAMSDPMYSGKMKV 446
Query: 521 LEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNS 580
++KL+ + +K DK+LLFS S ++LD+LE + + +G + RLDG+T S R +V +FNS
Sbjct: 447 MQKLLNHFIAKKDKVLLFSLSTKLLDVLESYCMAEGLEYHRLDGNTKSKDRVKIVKEFNS 506
Query: 581 SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLL 640
S + L+ST AGGLGLN + AN VV+FDP WNPA DLQA DR +R GQ R V VFRL+
Sbjct: 507 SRDVNLCLVSTLAGGLGLNFIGANVVVLFDPTWNPANDLQAIDRVYRIGQCRDVTVFRLI 566
Query: 641 SAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSD 698
S G++EE++Y RQVYKQQL + + + +RYFE VQ + GELFGI NLFR +D
Sbjct: 567 SLGTVEEIIYLRQVYKQQLQSSVIGQENARRYFEAVQGTDGYAGELFGIRNLFRLQTD 624
>UNIPROTKB|F1NYG8 [details] [associations]
symbol:F1NYG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 EMBL:AADN02067869 EMBL:AADN02067866
EMBL:AADN02067867 EMBL:AADN02067868 IPI:IPI00682975
Ensembl:ENSGALT00000020603 OMA:PEINICL Uniprot:F1NYG8
Length = 879
Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
Identities = 235/570 (41%), Positives = 350/570 (61%)
Query: 118 LSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA 177
LS +G++ +P +IN L +QREG +FLY Y NK G ILGDDMGLGKT+Q I+FLA
Sbjct: 19 LSDNGDF----IPYTINRYLRGYQREGAQFLYWHYANKRGCILGDDMGLGKTVQVISFLA 74
Query: 178 AVFGKDESSDS-----------TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNV 226
AV K + + T+ K++K + K LI+ P SV+ NW+ E W F V
Sbjct: 75 AVLHKKGTREDIENNMPEFLQRTMKKESKCNPKKTFLIVAPLSVLYNWKDELDTWGYFKV 134
Query: 227 SIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKL 286
S+ HG ++ L +++ EV +T++++ R++ L+ + W VIVDE HR+KN KS++
Sbjct: 135 SVLHGSKKEGDLNRIKQGKCEVALTTYETLRLYLDELNNIGWSAVIVDEVHRIKNPKSQI 194
Query: 287 YMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLT 346
LK RIGLTGTI+QN + EL+ + DW PG LG+R HF++ + +PL+ GQR T
Sbjct: 195 TQTMKSLKCNVRIGLTGTILQNNMNELWCVMDWAVPGLLGSRVHFKKKFSDPLERGQRHT 254
Query: 347 APERFIRIADERKQHLVAVLRK---YLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
A +R +A RK +V + RK + LRRTK I + KED +V+C++++ QK Y
Sbjct: 255 ATKR--ELATGRKA-MVKLARKMSSWFLRRTKV-LISDQLPKKEDRMVYCSLTEFQKAVY 310
Query: 404 RRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISN 463
R +L+ ++ ++ PCSC S + CC ++ N G ++ L L L LQ+++N
Sbjct: 311 RAVLKTEDVSLVLRAREPCSCNSGRIRKNCCYKI-NSHG-ETVK-SLQLSYLTILQKVAN 367
Query: 464 HLELIKPNPRDEPDKQRKD--AELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRAL 521
H+ L++ D KQ++ + + VF D + +++ +F +SD K GKMR L
Sbjct: 368 HVALLQT---DNTSKQQETHIKRVCNEVFSSFPDFMQ-LSKDAAFETISDPKYSGKMRVL 423
Query: 522 EKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSS 581
++L+ + DK+LLFS+S ++LD+LE++ I G F RLDGST S R +V +FN
Sbjct: 424 QQLLNHFRKNKDKVLLFSFSTKLLDVLEQYCIASGLDFRRLDGSTKSEDRIRIVREFNRV 483
Query: 582 PSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLS 641
P + L+ST AGGLGLN V AN V++FDP WNPA DLQA DR++R GQ + V VFRL+S
Sbjct: 484 PEINICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAIDRAYRIGQCKDVKVFRLIS 543
Query: 642 AGSLEELVYTRQVYKQQLSNIAVSGKLEKR 671
G++EE++Y RQVYKQ L+ I + G+ +K+
Sbjct: 544 LGTVEEMMYLRQVYKQLLAYI-IQGQKKKK 572
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 444 (161.4 bits), Expect = 2.4e-76, Sum P(4) = 2.4e-76
Identities = 106/329 (32%), Positives = 178/329 (54%)
Query: 121 DGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVF 180
D E+ ++P + +L ++Q+ GV++L++L+ + GGILGD+MGLGKTIQ IAFLA
Sbjct: 487 DAEFDDFKMPGFLFRKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLA--- 543
Query: 181 GKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYH--GP---NR 234
G S T + + G +I+CP++V+ W EF W F V+I H G +
Sbjct: 544 GLSYSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTQKK 603
Query: 235 DMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELK 294
+ ++ + C +LITS+ R+ +S +W VI+DE H+++N + + +AC + +
Sbjct: 604 EKLIRDIAHCH-GILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFR 662
Query: 295 TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI 354
T +RI L+G+ MQN + EL++LFD++ PG LGT F E + P+ G A ++
Sbjct: 663 TPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKT 722
Query: 355 ADERKQHLVAVLRKYLLRRTKEETIGHLMM-GKEDNVVFCTMSDLQKRAYRRLLQLPEIQ 413
A + L + YLLRR K + L + K + V+FC +++ Q + Y+ + E+
Sbjct: 723 AYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTEEQHKVYQNFIDSKEVY 782
Query: 414 CLINKDLPCSCGSPLTQVECCKRLDNLDG 442
++N D+ G + + C D G
Sbjct: 783 RILNGDMQIFSGLVALR-KICNHPDLFSG 810
Score = 413 (150.4 bits), Expect = 2.4e-76, Sum P(4) = 2.4e-76
Identities = 77/162 (47%), Positives = 116/162 (71%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
K GKM +E L+ W +G ++LLFS S +MLDILE FL + YS+ ++DG+T RQ
Sbjct: 831 KRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQ 890
Query: 573 SLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
L+ +N S VFL++TR GG+G+NL ANRV+I+DP+WNP+ D QA++R++R GQK+
Sbjct: 891 PLITRYNEDTSIFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKK 950
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFE 674
V V+RLL+AG++EE +Y RQ++KQ L+N + ++R+F+
Sbjct: 951 QVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFK 992
Score = 51 (23.0 bits), Expect = 2.4e-76, Sum P(4) = 2.4e-76
Identities = 26/118 (22%), Positives = 47/118 (39%)
Query: 727 KGLETHIVSSKDSNTLLSTGSKTRK---SSDPEMARTSKPLLEDMGIVYAH---RNDDIV 780
KG + ++S + L R S PE + P+LE++ + +
Sbjct: 1071 KGAGVNTITSDQGDPLKDAPQTPRNLTGSGGPEEKTKAVPILEELSVTSGRVDCSSSPRT 1130
Query: 781 NKQPGFQRKKEESI--PQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLL 836
+K G EESI Q LS R ++ L + + + + SK + ++S+L
Sbjct: 1131 SKMDGLS--SEESIHEKQGLSDRRESCQAQTEPLQENKESENNF--SKHKSKTKHSVL 1184
Score = 44 (20.5 bits), Expect = 2.4e-76, Sum P(4) = 2.4e-76
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 455 LVKLQQISNHLELIKPNPRDE---PDKQRKD 482
LV L++I NH +L P++ PD +D
Sbjct: 795 LVALRKICNHPDLFSGGPKNLKTIPDDDEED 825
Score = 43 (20.2 bits), Expect = 1.7e-75, Sum P(4) = 1.7e-75
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 798 LSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLARFMGMD 843
L + PP N+ C +S AS+ D + E A+ G++
Sbjct: 1031 LKRKLPPAFGADHNIPICRKFPDSNASTNDTTSSEEKFTAKGAGVN 1076
Score = 37 (18.1 bits), Expect = 7.0e-75, Sum P(4) = 7.0e-75
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 787 QRKKEESIPQDLSSRPPP 804
QR + E+ Q+ + PPP
Sbjct: 1396 QRLESENAHQEAPAPPPP 1413
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 440 (159.9 bits), Expect = 2.1e-75, Sum P(3) = 2.1e-75
Identities = 107/330 (32%), Positives = 179/330 (54%)
Query: 121 DGEYPI-IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179
D E+ +VP + +L ++Q+ GV++L++L+ + GGILGD+MGLGKTIQ IAFLA
Sbjct: 490 DAEFDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLA-- 547
Query: 180 FGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYH--GP---N 233
G S T + + + G +I+CP++V+ W EF W F V+I H G
Sbjct: 548 -GLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHK 606
Query: 234 RDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL 293
++ ++ + C +LITS+ R+ +S +W VI+DE H+++N + + +AC +
Sbjct: 607 KEKLIRDVAHCH-GILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQF 665
Query: 294 KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIR 353
+T +RI L+G+ MQN + EL++LFD++ PG LGT F E + P+ G A ++
Sbjct: 666 RTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVK 725
Query: 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMM-GKEDNVVFCTMSDLQKRAYRRLLQLPEI 412
A + L + YLLRR K + L + K + V+FC ++D Q + Y+ + E+
Sbjct: 726 TAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEV 785
Query: 413 QCLINKDLPCSCGSPLTQVECCKRLDNLDG 442
++N ++ G + + C D G
Sbjct: 786 YRILNGEMQIFSGL-IALRKICNHPDLFSG 814
Score = 413 (150.4 bits), Expect = 2.1e-75, Sum P(3) = 2.1e-75
Identities = 78/162 (48%), Positives = 116/162 (71%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
K GKM +E L+ W +G ++LLFS S +MLDILE FL + Y++ ++DG+T RQ
Sbjct: 836 KRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQ 895
Query: 573 SLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
L+ +N S VFL++TR GGLG+NL ANRVVI+DP+WNP+ D QA++R++R GQK+
Sbjct: 896 PLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKK 955
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFE 674
V V+RLL+AG++EE +Y RQ++KQ L+N + ++R+F+
Sbjct: 956 QVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFK 997
Score = 46 (21.3 bits), Expect = 2.1e-75, Sum P(3) = 2.1e-75
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 455 LVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFG 491
L+ L++I NH +L P++ K D EL FG
Sbjct: 799 LIALRKICNHPDLFSGGPKNL--KGLPDDELEEDQFG 833
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 438 (159.2 bits), Expect = 7.0e-75, Sum P(3) = 7.0e-75
Identities = 106/330 (32%), Positives = 179/330 (54%)
Query: 121 DGEYPI-IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179
D E+ ++P + +L ++Q+ GV++L++L+ + GGILGD+MGLGKTIQ IAFLA
Sbjct: 479 DAEFDEGFKMPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLA-- 536
Query: 180 FGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYH--GP---N 233
G S T + + + G +I+CP++V+ W EF W F V+I H G
Sbjct: 537 -GLSYSKIRTRGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSFTHK 595
Query: 234 RDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL 293
++ ++ + C +LITS+ R+ +S +W VI+DE H+++N + + +AC +
Sbjct: 596 KEKLVRDIAHCH-GILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAITLACKQF 654
Query: 294 KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIR 353
+T +RI L+G+ MQN + EL++LFD++ PG LGT F E + P+ G A ++
Sbjct: 655 RTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVK 714
Query: 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMM-GKEDNVVFCTMSDLQKRAYRRLLQLPEI 412
A + L + YLLRR K + L + K + V+FC ++D Q + Y+ + E+
Sbjct: 715 TAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEV 774
Query: 413 QCLINKDLPCSCGSPLTQVECCKRLDNLDG 442
++N ++ G + + C D G
Sbjct: 775 YRILNGEMQIFSGLVALR-KICNHPDLFSG 803
Score = 415 (151.1 bits), Expect = 7.0e-75, Sum P(3) = 7.0e-75
Identities = 78/162 (48%), Positives = 116/162 (71%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
K GKM +E L+ W +G ++LLFS S +MLDILE FL + YS+ ++DG+T RQ
Sbjct: 825 KRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQ 884
Query: 573 SLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
L+ +N S VFL++TR GGLG+NL ANRV+I+DP+WNP+ D QA++R++R GQK+
Sbjct: 885 PLITRYNEDASIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKK 944
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFE 674
V V+RLL+AG++EE +Y RQ++KQ L+N + ++R+F+
Sbjct: 945 QVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFK 986
Score = 46 (21.3 bits), Expect = 9.9e-34, Sum P(3) = 9.9e-34
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 185 SSDSTILKDNKVDKKGYVLI 204
S S+ +NK DKKG VL+
Sbjct: 305 SEPSSTRSENKPDKKGTVLL 324
Score = 41 (19.5 bits), Expect = 7.0e-75, Sum P(3) = 7.0e-75
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 455 LVKLQQISNHLELIKPNPRD 474
LV L++I NH +L P++
Sbjct: 788 LVALRKICNHPDLFSGGPKN 807
Score = 40 (19.1 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 611 PNWNPAQDLQAQD--RSFRFGQKRH 633
P W + L R RFGQKR+
Sbjct: 1299 PTWTGHRGLAGAPAGRKSRFGQKRN 1323
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 445 (161.7 bits), Expect = 1.7e-73, Sum P(3) = 1.7e-73
Identities = 102/288 (35%), Positives = 163/288 (56%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GKM+ + +++ W +G ++LLFS + +MLDILE FL+ YS+ R+DG TP R +L+
Sbjct: 727 GKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALI 786
Query: 576 DDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635
D+FN+S VF+++T+ GGLG NL ANRV+IFDP+WNP+ D+QA++R++R GQK+ V
Sbjct: 787 DEFNNSEDMFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVT 846
Query: 636 VFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKE-FQGELFGICNLFR 694
V+RL++ G++EE VY RQ+YK L+N + ++R+F+ +D K+ F + G N
Sbjct: 847 VYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKA-RDMKDLFILKDDGDSNAST 905
Query: 695 DLSDNLFTXXXXXXXXXXXXXXXRHHCTNQGFKGLETHIVSSKDSN-TLLSTGSKTRKSS 753
+ S N+F+ + Q L H + S T + KT ++
Sbjct: 906 ETS-NIFSQLAEEINIVGVQSDKKPESDTQ----LALHKTAEGSSEQTDVEMTDKTGEAM 960
Query: 754 DPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSR 801
D E K L + GI A +D I+N ++ + E ++ R
Sbjct: 961 DEE-TNILKSLFDAHGIHSAVNHDAIMNANDEEEKMRLEHQASQVAQR 1007
Score = 263 (97.6 bits), Expect = 1.7e-73, Sum P(3) = 1.7e-73
Identities = 58/179 (32%), Positives = 97/179 (54%)
Query: 235 DMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELK 294
D +L ++ +LIT+++ R+ G L + W ++DE HR++N S + + C +L+
Sbjct: 506 DSLLNRVLNSESGLLITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQ 565
Query: 295 TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI 354
T +RI +TG +QNK+ EL++LFD+V PG LG F + P+ G A +
Sbjct: 566 TVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVST 625
Query: 355 ADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQ 413
A L ++ YLLRR K + HL K ++V+FC+++ Q+ YR L E++
Sbjct: 626 AYRCAVVLRDLIMPYLLRRMKADVNAHLTK-KTEHVLFCSLTVEQRSTYRAFLASSEVE 683
Score = 167 (63.8 bits), Expect = 1.7e-73, Sum P(3) = 1.7e-73
Identities = 39/110 (35%), Positives = 65/110 (59%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
+ +P I +L ++QR GV++L++L+ + GGI+GD+MGLGKTIQ ++FL +
Sbjct: 375 LNIPECIFRKLFDYQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGS-------- 426
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD 235
L +K+ K +IICP ++++ W E +W F+V I H +D
Sbjct: 427 ----LHFSKMYKPS--IIICPVTLLRQWRREAQKWYPDFHVEILHDSAQD 470
Score = 44 (20.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 248 VLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRI 299
+L + FD++ IH ++ + +E RL+++ S++ E ++R+
Sbjct: 966 ILKSLFDAHGIHSAVNHDAIMNANDEEEKMRLEHQASQVAQRAAEALRQSRM 1017
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 427 (155.4 bits), Expect = 1.9e-73, Sum P(3) = 1.9e-73
Identities = 101/313 (32%), Positives = 172/313 (54%)
Query: 121 DGEYPI-IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179
D E+ ++P + +L ++Q+ GV+++++L+ + GGILGD+MGLGKTIQ IAFLA
Sbjct: 467 DAEFDEGFKIPGFLWKKLFKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQIIAFLA-- 524
Query: 180 FGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPN----- 233
G S T + + G +I+CP++V+ W EF W F V++ H
Sbjct: 525 -GLSYSKLKTRGSNYRYAGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHDTGSFTSK 583
Query: 234 RDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL 293
++ ++ ++ A +LITS+ RI + +W VI+DE H+++N + + AC +
Sbjct: 584 KEKLIPEIVASH-GILITSYSYIRIMQDYIQRYDWHYVILDEGHKIRNPNAGVTTACKQF 642
Query: 294 KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIR 353
+T +R L+G+ MQN + EL++LFD+V PG LGT F E + P+ G A ++
Sbjct: 643 RTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYANASPVQVQ 702
Query: 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMM-GKEDNVVFCTMSDLQKRAYRRLLQLPEI 412
A + L + YLLRR K + +L + K + V+FC +++ Q++ Y+ L E+
Sbjct: 703 TAYKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEDQRQVYQTFLDSKEV 762
Query: 413 QCLINKDLPCSCG 425
++N D+ G
Sbjct: 763 YQILNGDMQVFSG 775
Score = 412 (150.1 bits), Expect = 1.9e-73, Sum P(3) = 1.9e-73
Identities = 109/319 (34%), Positives = 171/319 (53%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
K GKM +E L+ W +G ++LLF+ S +ML+ILE F+ G+S+ ++DG+T RQ
Sbjct: 814 KRSGKMIVVESLLRLWHKQGHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQ 873
Query: 573 SLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
L+ FN + VF+++TR GGLG+NL ANRVVI+DP+WNP+ D QA++R++R GQK+
Sbjct: 874 PLIAQFNQNKDIFVFILTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKQ 933
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNL 692
V V+RLL+AG++EE +Y RQ++KQ L+N + ++R+F+ D E LF + +
Sbjct: 934 QVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKS-NDIYE----LFTLSS- 987
Query: 693 FRDLSDNLFTXXXXXXXXXXXXXXXRH---------------HCTNQGFKGLETHIVSSK 737
D S T RH H T+ G + T +
Sbjct: 988 -PDGSQGTETSAIFAGTGSDVQVPKRHKTSSPSQGTTRPSLSHSTDSGNRNT-TSVNGLP 1045
Query: 738 DSNTLLSTGSK--TRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIP 795
++NT S +K +R +++ + TSK L M HR K+ + ++++IP
Sbjct: 1046 NNNTSESPNNKLESRSNANGLTSSTSKAL-SSMNSPQKHRE-----KKKHCETPEKDTIP 1099
Query: 796 QDLSSRPPPIHSKRRNLLD 814
D R H KR++ D
Sbjct: 1100 SDGHKRK---HKKRKHSED 1115
Score = 41 (19.5 bits), Expect = 1.9e-73, Sum P(3) = 1.9e-73
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 455 LVKLQQISNHLELIKPNPR 473
L+ L++I NH +L PR
Sbjct: 776 LIALRKICNHPDLFTGGPR 794
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 429 (156.1 bits), Expect = 1.9e-73, Sum P(3) = 1.9e-73
Identities = 104/305 (34%), Positives = 169/305 (55%)
Query: 121 DGEYPI-IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179
D E+ +VP + +L ++Q+ GV++L++L+ + GGILGD+MGLGKTIQ IAFLA
Sbjct: 484 DAEFDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLA-- 541
Query: 180 FGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYH--GP---N 233
G S T + + + G LI+CP++V+ W EF W F V+I H G
Sbjct: 542 -GLSYSKIRTRGSNYRFEGLGPTLIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSCAHR 600
Query: 234 RDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL 293
++ ++ + C VLITS+ R+ +S +W VI+DE H+++N + + +AC +
Sbjct: 601 KERLVRDIVHCH-GVLITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQF 659
Query: 294 KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIR 353
+T +RI L+G+ MQN + EL++LFD+ PG LGT F E + P+ G A ++
Sbjct: 660 RTPHRIILSGSPMQNNLRELWSLFDFTFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVK 719
Query: 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMM-GKEDNVVFCTMSDLQKRAYRRLLQLPEI 412
A + L + YLLRR K + L + K + V+FC ++D Q + Y+ + +
Sbjct: 720 TAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKAV 779
Query: 413 QCLIN 417
++N
Sbjct: 780 YRILN 784
Score = 411 (149.7 bits), Expect = 1.9e-73, Sum P(3) = 1.9e-73
Identities = 84/188 (44%), Positives = 124/188 (65%)
Query: 495 DLVGGNAQNESFI---GLSDV-----KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLD 546
DL G +N S + GL + K GKM +E L+ W +G ++LLFS S +ML
Sbjct: 804 DLFSGGPKNTSALPEDGLEEEQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLH 863
Query: 547 ILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRV 606
ILE FL YS+ ++DG+T RQ L+ +N S VFL++TR GGLG+NL ANRV
Sbjct: 864 ILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDTSIFVFLLTTRVGGLGVNLTGANRV 923
Query: 607 VIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
+I+DP+WNP+ D QA++R++R GQK+ V V+RLL+AG++EE +Y RQ++KQ L+N +
Sbjct: 924 IIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKD 983
Query: 667 KLEKRYFE 674
++R+F+
Sbjct: 984 PKQRRFFK 991
Score = 41 (19.5 bits), Expect = 1.9e-73, Sum P(3) = 1.9e-73
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 455 LVKLQQISNHLELIKPNPRD 474
LV L++I NH +L P++
Sbjct: 793 LVALRKICNHPDLFSGGPKN 812
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 444 (161.4 bits), Expect = 5.6e-73, Sum P(4) = 5.6e-73
Identities = 111/337 (32%), Positives = 183/337 (54%)
Query: 114 EPLVLSKDGEYPI-IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQT 172
E L D E+ +VP + +L ++Q+ GV++L++L+ + GGILGD+MGLGKTIQ
Sbjct: 478 EELSDESDTEFEEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQI 537
Query: 173 IAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYH- 230
IAFLA G S T + + G +I+CP++V+ W EF W F V+I H
Sbjct: 538 IAFLA---GLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAILHE 594
Query: 231 -GP--NRDM-ILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKL 286
G N+ + ++ ++ +C +LITS+ R+ + +W VI+DE H+++N + +
Sbjct: 595 TGSYTNKKVKLIREIASCH-GILITSYSYIRLMQDNIHSYDWHYVILDEGHKIRNPNAAV 653
Query: 287 YMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLT 346
+AC + +T +RI L+G+ MQN + EL++LFD+V PG LGT F E + P+ G
Sbjct: 654 TLACKQFRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSN 713
Query: 347 APERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMM-GKEDNVVFCTMSDLQKRAYRR 405
A ++ A + L + YLLRR K + L + K + V+FC ++D Q++ Y+
Sbjct: 714 ASPVQVKTAYKCACVLRDAINPYLLRRMKADVKMSLSLPDKNEQVLFCRLTDEQRQVYQN 773
Query: 406 LLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDG 442
+ E+ ++N D+ G + + C D G
Sbjct: 774 FIDSKEVYQILNGDMQVFSGLVALR-KICNHPDLFSG 809
Score = 398 (145.2 bits), Expect = 5.6e-73, Sum P(4) = 5.6e-73
Identities = 73/162 (45%), Positives = 114/162 (70%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
K GKM +E L+ W +G ++L F+ S +ML ILE FL + YS+ R+DG+T RQ
Sbjct: 832 KRSGKMIVVESLLKIWHKQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQ 891
Query: 573 SLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
L+ +N S +FL++TR GG+G+NL A+RV+I+DP+WNP+ D QA++R++R GQK+
Sbjct: 892 PLITRYNEDKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKK 951
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFE 674
V V+RLL+AG++EE +Y RQ++KQ L+N + ++R+F+
Sbjct: 952 QVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFK 993
Score = 41 (19.5 bits), Expect = 5.6e-73, Sum P(4) = 5.6e-73
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 455 LVKLQQISNHLELIKPNPRD---EPDKQRKDAE 484
LV L++I NH +L P+ PD ++A+
Sbjct: 794 LVALRKICNHPDLFSGGPKILKCVPDADLEEAD 826
Score = 37 (18.1 bits), Expect = 5.6e-73, Sum P(4) = 5.6e-73
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 738 DSNTLLSTGSKTRKSSDPEMARTS 761
D +TL G +KSS P+ +++S
Sbjct: 1041 DDDTLKG-GLHLKKSSSPKYSKSS 1063
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 417 (151.9 bits), Expect = 3.1e-72, Sum P(2) = 3.1e-72
Identities = 96/301 (31%), Positives = 173/301 (57%)
Query: 128 QVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSD 187
++P I L E+Q V++LY+L+ + GGI+GD+MGLGKT+Q ++FLA++
Sbjct: 786 KIPFDIYKNLFEYQVTCVRWLYELHCQETGGIVGDEMGLGKTVQIVSFLASLHYSRRLG- 844
Query: 188 STILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYH----------GPNRDM 236
G LI+ P++++ NW EF +W F V ++H G +++
Sbjct: 845 ------------GPALIVAPATLLSNWIKEFHKWWPPFRVGLFHSSGSGGGGNDGSDKED 892
Query: 237 ILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTR 296
I++K+ G +L+T+FDS RI+ IL + +WE VI+DE H+++N +++ ++C +L+T
Sbjct: 893 IVKKIAEKG-HILLTTFDSIRINQEILLKYHWEYVILDEGHKIRNPDAEITLSCKQLQTP 951
Query: 297 NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIAD 356
+R+ L+G+ +QNK+ EL++LFD+V PG LGT F+ + P+ G A ++ A
Sbjct: 952 HRVILSGSPIQNKLTELWSLFDFVFPGRLGTLPIFKSQFSLPISVGGFANASPIQVQAAY 1011
Query: 357 ERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLI 416
+ L ++ Y+LRR K + + L K + V+ C ++ Q++ Y L +I+ ++
Sbjct: 1012 KCAVALRDLISPYMLRRVKSDVLKSLP-SKNEQVLMCPLTPFQEKLYLEFLDSNDIKSVL 1070
Query: 417 N 417
+
Sbjct: 1071 D 1071
Score = 406 (148.0 bits), Expect = 3.1e-72, Sum P(2) = 3.1e-72
Identities = 74/166 (44%), Positives = 119/166 (71%)
Query: 511 DVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFS--RLDGSTPS 568
+++ K++ +E ++ W +GDK+LLF + +MLDI+E++ IR F+ R+DG+T
Sbjct: 1108 NIERSAKLKVVETILPLWFKQGDKVLLFCQTRQMLDIVEQY-IRDSTQFNYLRMDGTTSI 1166
Query: 569 NLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRF 628
RQ LV+ FN PS +FL++T+ GGLGLNL ANRV++FDP+WNP+ D+QA++R +R
Sbjct: 1167 RQRQCLVEQFNIDPSLFIFLLTTKVGGLGLNLTGANRVILFDPDWNPSTDMQARERVYRI 1226
Query: 629 GQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFE 674
GQK+ V ++RL++ G++EE +Y RQ+YKQ L+N + +KR+F+
Sbjct: 1227 GQKKAVTIYRLITLGTIEEKIYHRQIYKQFLTNKILKDPRQKRFFK 1272
Score = 37 (18.1 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 457 KLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGP 492
KL++IS KP ++ D D L+ + P
Sbjct: 502 KLKKISTPKSKSKPKNNNDDDLLNLDISLSGRIRTP 537
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 394 (143.8 bits), Expect = 2.2e-68, Sum P(3) = 2.2e-68
Identities = 75/165 (45%), Positives = 116/165 (70%)
Query: 511 DVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR-KGYSFSRLDGSTPSN 569
D + GK++ + L+ W +G + LLFS + +MLDILE L + R+DGST
Sbjct: 620 DPEKSGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIA 679
Query: 570 LRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFG 629
LRQ LVD+FN + VFL++TR GGLG+NL A+RV++FDP+WNP+ D QA++R++R G
Sbjct: 680 LRQDLVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLG 739
Query: 630 QKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFE 674
QK+ V+V+RL++AG++EE +Y RQ++KQ L+N + ++R+F+
Sbjct: 740 QKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFK 784
Score = 280 (103.6 bits), Expect = 2.2e-68, Sum P(3) = 2.2e-68
Identities = 63/191 (32%), Positives = 112/191 (58%)
Query: 227 SIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKL 286
S +H ++++ E + G +LIT++ RI+G ++ W ++DE H+++N S++
Sbjct: 396 SSFHRYAKNLV-ESVFTRG-HILITTYAGLRIYGDLILPREWGYCVLDEGHKIRNPDSEI 453
Query: 287 YMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLT 346
++C +++T NRI L+GT +QN + EL+NLFD+V PG LGT F+ + P+ G
Sbjct: 454 SISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYAN 513
Query: 347 APERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
A ++ A + L ++ YLLRR K + L K + V+FC ++ LQ++AY+
Sbjct: 514 ASNVQVQTAYKCACMLRDLISPYLLRRMKLDVAADLPK-KSEQVLFCKLTPLQRKAYQDF 572
Query: 407 LQLPEIQCLIN 417
LQ ++Q ++N
Sbjct: 573 LQGSDMQKILN 583
Score = 152 (58.6 bits), Expect = 2.2e-68, Sum P(3) = 2.2e-68
Identities = 36/103 (34%), Positives = 57/103 (55%)
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
+P I L +Q V++L++LY + GGI+GD+MGLGKTIQ ++FL S
Sbjct: 269 IPGDIRPHLFRYQVTCVQWLWELYCQEAGGIIGDEMGLGKTIQIVSFL-----------S 317
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYH 230
++ K K LI+CP+++++ W EF W + V + H
Sbjct: 318 SLHHSGKFQKPA--LIVCPATLMKQWVNEFHTWWAPLRVVVLH 358
Score = 39 (18.8 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 612 NWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEEL-VYTRQVYKQ-QLSNI 662
N N A+D+ A+DR K H ++ S+ E++ + + + YK Q SN+
Sbjct: 823 NGNEAEDIPARDRK---KHKIHDKGKKVNSSKVFEKMGIASMEKYKPPQESNV 872
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 672 (241.6 bits), Expect = 8.3e-67, Sum P(2) = 8.3e-67
Identities = 182/564 (32%), Positives = 298/564 (52%)
Query: 136 RLLEHQREGVKFLYKLYKN-KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDN 194
+L +HQ+EGV FLY LY++ + GGIL DDMGLGKTIQ I+FL+ ++ D+ +
Sbjct: 104 KLYDHQKEGVAFLYSLYRDGRKGGILADDMGLGKTIQVISFLSGMY------DAELAN-- 155
Query: 195 KVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPN---RDMILEKLEACGVEVLI 250
+ L++ P+S+I+NW EF++W+ V +HG + R+ LE+++ G V+I
Sbjct: 156 ------HTLLVMPTSLIKNWVREFAKWTPGMRVKEFHGSSKTERNRNLERIQRKG-GVII 208
Query: 251 TSF----DSYRIHGSI-LSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTI 305
T++ ++Y GS E W+ VI+DEAH++K +K + + +NR+ LTGT
Sbjct: 209 TTYQMLINNYEQLGSNGHREFKWDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTP 268
Query: 306 MQNKIMELYNLFDWVAPGSL-GTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364
+QN + E++ LFD+ GSL GT + F+ Y+ P+ + A + Q+L
Sbjct: 269 VQNNLREMWALFDFACQGSLLGTSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTD 328
Query: 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRA--YRRLLQLPEIQCLINKDLPC 422
+++ Y LRRTK + + + E+ F D + + R +++P + DL
Sbjct: 329 IIKPYFLRRTKAD-VQQKKLKLEEG--FEEEEDQENKCPNAREGVEMPSLTR--KNDLIV 383
Query: 423 SCGSPLTQVECCKRLDNLDGCDSCPFCLVLPC--LVKLQQISNHLELIKPNPRDEPDKQR 480
Q + + +LD P L L+++ +H L+ + +R
Sbjct: 384 WTYLSSVQEDIYNKFISLDQIKELLTTTRSPLAELTVLKKLCDHPRLLSQRAVIQLGLER 443
Query: 481 -KDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFS 539
D+EL V + + N S L ++ GK++ + LM +G + L+FS
Sbjct: 444 GSDSEL---VHSDESESAVSQIDNISDHTL--IEESGKLQFVVSLMECLREEGHRTLIFS 498
Query: 540 YSVRMLDILEKFLIRKGYSFSRLDGS-TPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGL 598
S +MLDI+E+ L + + RLDG+ T R+ + F + +FL++T+ GG+G+
Sbjct: 499 QSRKMLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGI 558
Query: 599 NLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQ 658
L ANRVVIFDP+WNPA D QA DR++R GQ +VI++RL++ G++EE +Y RQV+K
Sbjct: 559 TLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDS 618
Query: 659 LSNIAVSGKLEK-RYFEGVQDCKE 681
L K RYF Q+ +E
Sbjct: 619 LIRQTTGDKKNPFRYFSK-QELRE 641
Score = 48 (22.0 bits), Expect = 8.3e-67, Sum P(2) = 8.3e-67
Identities = 17/74 (22%), Positives = 32/74 (43%)
Query: 764 LLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLA 823
+LE G V N+ + P + +P ++ + NLL GK+SLA
Sbjct: 1356 VLESTGDVELDSNETMDQCAPKTVPVETHVLPVSSTNTAAEASDNKYNLL-VLSGKQSLA 1414
Query: 824 SSKDRKNIEYSLLA 837
+ ++ +++ L A
Sbjct: 1415 EGRKQEALDFFLKA 1428
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 684 (245.8 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 187/563 (33%), Positives = 303/563 (53%)
Query: 136 RLLEHQREGVKFLYKLYKN-KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDN 194
+L E+Q+EGV FLY LY++ + GGIL DDMGLGKT+Q IAFL+ +F D++++
Sbjct: 73 QLFEYQKEGVAFLYSLYRDGRRGGILADDMGLGKTVQIIAFLSGMF------DASLVN-- 124
Query: 195 KVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEACGVE--VLIT 251
+VL+I P+S+I W EF +W+ V +HGP++D L V+IT
Sbjct: 125 ------HVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRNLSRIQQRNGVIIT 178
Query: 252 SFDSYRIHGSILSEVN-----WEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIM 306
++ + LS +N W+ VI+DEAH++K +K + + RNRI LTGT +
Sbjct: 179 TYQMLINNWQQLSSLNGREFVWDYVILDEAHKIKTSSTKSAICARAIPARNRILLTGTPI 238
Query: 307 QNKIMELYNLFDWVAPGSL-GTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365
QN + EL++LFD+ GSL GT + F+ Y+ P+ + A + + ++L+A+
Sbjct: 239 QNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAI 298
Query: 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCG 425
++ Y LRRTKEE + K+ + +S+ A + ++P + DL
Sbjct: 299 IKPYFLRRTKEE-----VQKKKSSNPEVRLSEEDPDA-DAICEMPSLSR--KNDLIIWIR 350
Query: 426 SPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAEL 485
Q E ++ +LD L++ L ++ L+ + +PR + + L
Sbjct: 351 LVPLQEEIYRKFVSLDHIKE----LLMETRSPLAELGV-LKKLCDHPRLLSARACQLLNL 405
Query: 486 ASAVFGPDIDLVGGNAQNESFIG-LSD---VKSCGKMRALEKLMYSWASKGDKILLFSYS 541
+ F ++ G ++ I +SD ++ GKM L L+ +G + L+FS S
Sbjct: 406 GAVRFSVQDEIEGEDSSGVDHIDQVSDETLMEESGKMTFLMDLLKRLRDEGHQTLVFSQS 465
Query: 542 VRMLDILEKFLIRKGYSFSRLDGSTPSNL--RQSLVDDFNSSPSKQVFLISTRAGGLGLN 599
++L+ILE+ L + + R+DG T ++L R+ + F + VFL++T+ GG+GL
Sbjct: 466 RQILNILERLLKNRHFKILRIDG-TITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGLT 524
Query: 600 LVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQL 659
L +A+RVVIFDP+WNPA D QA DR +R GQK +V+V+RL++ G++EE +Y RQV+K L
Sbjct: 525 LTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSL 584
Query: 660 SNIAVSGKLEK-RYFEGVQDCKE 681
K RYF Q+ +E
Sbjct: 585 IRQTTGDKKNPFRYFSK-QELRE 606
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 666 (239.5 bits), Expect = 4.3e-66, Sum P(2) = 4.3e-66
Identities = 185/563 (32%), Positives = 299/563 (53%)
Query: 136 RLLEHQREGVKFLYKLYKN-KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDN 194
+L EHQ+EGV FLY LY++ + GGIL DDMGLGKT+Q IAFL+ +F D+T++
Sbjct: 117 QLFEHQKEGVAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMF------DATLVS-- 168
Query: 195 KVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEACGVE--VLIT 251
+VL+I P+++I W EF +W+ V +HG ++D L V+IT
Sbjct: 169 ------HVLLIMPTNLISTWIKEFVKWTPGMRVKTFHGSSKDERTRNLNRIQQRNGVIIT 222
Query: 252 SFDSYRIHGSILSEVN-----WEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIM 306
++ + LS +N W+ VI+DEAH++K +K + + RNRI LTGT +
Sbjct: 223 TYQMLINNWQQLSSLNGQEFVWDYVILDEAHKIKTSSTKSAICARAVPARNRILLTGTPI 282
Query: 307 QNKIMELYNLFDWVAPGSL-GTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365
QN + EL++LFD+ GSL GT + F+ Y+ P+ + A + + ++L+A+
Sbjct: 283 QNNLQELWSLFDFACQGSLLGTLKTFKIEYENPIMRAREKDATPGEKALGLKISENLMAI 342
Query: 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCG 425
++ + LRRTKEE + + F S+ + ++P + DL
Sbjct: 343 IKSHFLRRTKEEV--QKKSSTPEEIRF---SEKNPDG-DAICKMPSLSR--KNDLIIWIR 394
Query: 426 SPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAEL 485
Q E ++ +LD L++ L ++ L+ + +PR + R L
Sbjct: 395 LRPLQEEIYRKFVSLDHIKE----LLMETRSPLAELGV-LKKLCDHPRLLSARARHLLSL 449
Query: 486 ASAVFGPDIDLVGGNAQNESFIG-LSD---VKSCGKMRALEKLMYSWASKGDKILLFSYS 541
S F + G +A + I ++D ++ GKM L +L+ +G + L+FS S
Sbjct: 450 GSVKFSVQGENEGEDASDVDHIDHVTDDTLMEESGKMIFLIELLRRLRDEGHQTLVFSQS 509
Query: 542 VRMLDILEKFLIRKGYSFSRLDGSTPSNL--RQSLVDDFNSSPSKQVFLISTRAGGLGLN 599
++L+I+E+ L + + R+DG T ++L R+ + F + VFL++T+ GG+GL
Sbjct: 510 RQILNIIERLLKNRHFKILRVDG-TVTHLVEREKRIHLFQQNKDYSVFLLTTQVGGVGLT 568
Query: 600 LVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQL 659
L +A RVVIFDP+WNPA D QA DR +R GQK +++V+RL++ G++EE +Y RQV+K L
Sbjct: 569 LTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENIVVYRLITCGTVEEKIYRRQVFKDSL 628
Query: 660 SNIAVSGKLEK-RYFEGVQDCKE 681
K RYF Q+ +E
Sbjct: 629 IRQTTGDKKNPFRYFTK-QELRE 650
Score = 44 (20.5 bits), Expect = 4.3e-66, Sum P(2) = 4.3e-66
Identities = 26/119 (21%), Positives = 57/119 (47%)
Query: 747 SKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRPPPIH 806
S+T+K PEM + +P Y H +++++ Q + +P++ ++ I
Sbjct: 762 SQTKKKC-PEMNKP-QPWPSSHLPTY-HIQEEVISSQ--MASVIIDDLPKENENQD--IS 814
Query: 807 SKRRNLLDCADGKESLASSKDRKNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQD 865
+ + N+ DG SL S+ D ++ ++L + G V E W S+ + +++ L++
Sbjct: 815 NIKMNVTVLQDGSHSLVSTSDADSV--AILPKGCGC-VDEI--WTNSSGMAIQKEALRE 868
>RGD|1561537 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6-like 2" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 PROSITE:PS00690
PROSITE:PS51194 RGD:1561537 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 IPI:IPI00194226
Ensembl:ENSRNOT00000026011 UCSC:RGD:1561537 ArrayExpress:D4AE16
Uniprot:D4AE16
Length = 466
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 145/432 (33%), Positives = 240/432 (55%)
Query: 171 QTIAFLAAVFGK-------DESSDSTILKDNKVDKKGYV----LIICPSSVIQNWEIEFS 219
+ I+FLAAV K + + +LK K + LI+ P SV+ NW+ E
Sbjct: 41 KVISFLAAVLHKKGTREDIENNMPEFLLKSMKKESSSTARKMFLIVAPLSVLYNWKDELD 100
Query: 220 RWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRL 279
W F V++ HG +D L +L+ E+ +T++++ R+ L+ + W +IVDEAHR+
Sbjct: 101 TWGYFRVTVLHGSKKDNELTRLKQRKCEIALTTYETLRLCLEELNSLEWSAIIVDEAHRI 160
Query: 280 KNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPL 339
+N +++ +K + RIGLTGTI+QN + EL+ + DW PG LG+R HF++ + +P+
Sbjct: 161 RNPNARVTEVMKAVKCKVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPV 220
Query: 340 KHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQ 399
+HGQR TA +R + + L + Y LRRTK G L KED +V+ +++D Q
Sbjct: 221 EHGQRHTATKRELATGRKAMHRLAKKMSGYFLRRTKTLIKGQLPK-KEDRMVYSSLTDFQ 279
Query: 400 KRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQ 459
K Y+ +L+ ++ ++ PC+CGS + +CC + N G CL L LQ
Sbjct: 280 KAVYQTVLETEDVALILTSSQPCTCGSGQKRRKCCYKT-NSQGDTVRTLCLSY--LTVLQ 336
Query: 460 QISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMR 519
+++NH+ L++ + ++ + VF D V +++ +F LSD K GKM+
Sbjct: 337 KVANHVALLQAASTSK-HQETLIKRICDQVFSRFPDFVQ-KSKDAAFETLSDPKYSGKMK 394
Query: 520 ALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFN 579
L++L+ + DK+LLFS+S ++LD+L+++ + G + RLDGST S R +V +FN
Sbjct: 395 VLDQLLNHFRKHRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFN 454
Query: 580 SSPSKQVFLIST 591
SS + L+ST
Sbjct: 455 SSQDVNICLVST 466
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 388 (141.6 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 108/338 (31%), Positives = 179/338 (52%)
Query: 120 KDGEYPII-QVPASIN-CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA 177
+D ++ ++ + P+ I +L E+Q +G+ +L LY+N+ GIL D+MGLGKT+QTI+FL
Sbjct: 120 EDHQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLG 179
Query: 178 AVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRD- 235
+ +K +D G ++I P S + NW EF++W+ NV + G
Sbjct: 180 YL---------RYIKH--ID--GPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQR 226
Query: 236 --MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL 293
+I ++L +VLITSF+ S L + WE ++VDEAHR+KNE S L
Sbjct: 227 ASIIKDQLYTAKFDVLITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLF 286
Query: 294 KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIR 353
+RNR+ +TGT +QN + EL+ L +++ P G + F E +D ++ + L E+ R
Sbjct: 287 YSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDN--QNSEELDEEEKQRR 344
Query: 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ--LPE 411
D+ L +L +LLRR K + L+ E NV + M+D+Q Y+RLL+ +
Sbjct: 345 -QDKAVSELHQLLSPFLLRRVKADVEKSLLPKIETNV-YIGMTDMQVEWYKRLLEKDIDA 402
Query: 412 IQCLINK-DLPCSCGSPLTQV-ECCKRLDNLDGCDSCP 447
+ ++ K + + + Q+ +CC DG + P
Sbjct: 403 VNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGP 440
Score = 334 (122.6 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 64/154 (41%), Positives = 103/154 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+K++ + ++G ++L+FS R+LDILE + + Y + R+DGST R
Sbjct: 449 VYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDR 508
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+D++N+ S++ +FL++TRAGGLG+NL SA+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 509 IEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQ 568
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
K+ V VFR ++ ++EE V R K +L + +
Sbjct: 569 KKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVI 602
Score = 61 (26.5 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 775 RNDDIVNKQPGFQRKKEESI--P-QDLSSRPPPIHSKR-------RNLLDCADGKESLAS 824
+ + ++N+Q KK ES+ P +DL + PP +SKR + LL C K L++
Sbjct: 903 KREKLINQQK-LLAKKIESLQDPLEDLKIQYPPNNSKRVYSKTEDKFLLYCVH-KYGLST 960
Query: 825 SKDRKNIEYSLLARFMGMDVFEFSKWILSATP 856
+N+ + + D+F+F +I S TP
Sbjct: 961 ----ENLYDKIKDEILTSDIFKFDWYIRSRTP 988
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 388 (141.6 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 108/338 (31%), Positives = 179/338 (52%)
Query: 120 KDGEYPII-QVPASIN-CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA 177
+D ++ ++ + P+ I +L E+Q +G+ +L LY+N+ GIL D+MGLGKT+QTI+FL
Sbjct: 120 EDHQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLG 179
Query: 178 AVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRD- 235
+ +K +D G ++I P S + NW EF++W+ NV + G
Sbjct: 180 YL---------RYIKH--ID--GPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQR 226
Query: 236 --MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL 293
+I ++L +VLITSF+ S L + WE ++VDEAHR+KNE S L
Sbjct: 227 ASIIKDQLYTAKFDVLITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLF 286
Query: 294 KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIR 353
+RNR+ +TGT +QN + EL+ L +++ P G + F E +D ++ + L E+ R
Sbjct: 287 YSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDN--QNSEELDEEEKQRR 344
Query: 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ--LPE 411
D+ L +L +LLRR K + L+ E NV + M+D+Q Y+RLL+ +
Sbjct: 345 -QDKAVSELHQLLSPFLLRRVKADVEKSLLPKIETNV-YIGMTDMQVEWYKRLLEKDIDA 402
Query: 412 IQCLINK-DLPCSCGSPLTQV-ECCKRLDNLDGCDSCP 447
+ ++ K + + + Q+ +CC DG + P
Sbjct: 403 VNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGP 440
Score = 334 (122.6 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 64/154 (41%), Positives = 103/154 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+K++ + ++G ++L+FS R+LDILE + + Y + R+DGST R
Sbjct: 449 VYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDR 508
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+D++N+ S++ +FL++TRAGGLG+NL SA+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 509 IEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQ 568
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
K+ V VFR ++ ++EE V R K +L + +
Sbjct: 569 KKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVI 602
Score = 61 (26.5 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 775 RNDDIVNKQPGFQRKKEESI--P-QDLSSRPPPIHSKR-------RNLLDCADGKESLAS 824
+ + ++N+Q KK ES+ P +DL + PP +SKR + LL C K L++
Sbjct: 903 KREKLINQQK-LLAKKIESLQDPLEDLKIQYPPNNSKRVYSKTEDKFLLYCVH-KYGLST 960
Query: 825 SKDRKNIEYSLLARFMGMDVFEFSKWILSATP 856
+N+ + + D+F+F +I S TP
Sbjct: 961 ----ENLYDKIKDEILTSDIFKFDWYIRSRTP 988
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 389 (142.0 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 99/291 (34%), Positives = 159/291 (54%)
Query: 123 EYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGK 182
E+ + PA +N +L +Q +GV +L L+KNK GIL D+MGLGKT+QTI+FL +
Sbjct: 182 EFQFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYL--- 238
Query: 183 DESSDSTILKDNKVDK-KGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRD---MI 237
++K G L+I P S + NW E +RW+ N I G + +I
Sbjct: 239 -----------RYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELI 287
Query: 238 LEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRN 297
+KL C +V+I S++ S L ++NWE +I+DEAHR+KNE+S L E +RN
Sbjct: 288 QKKLLGCDFDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRN 347
Query: 298 RIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADE 357
R+ +TGT +QN + EL+ L +++ P + F +++ T ++ D+
Sbjct: 348 RLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDWFSS------ESTEEDQ-----DK 396
Query: 358 RKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
+ L VL+ +LLRR K + L+ KE N+ + MS +QK+ Y+++L+
Sbjct: 397 IVKQLHTVLQPFLLRRIKSDVETSLLPKKELNL-YVGMSSMQKKWYKKILE 446
Score = 348 (127.6 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 71/172 (41%), Positives = 108/172 (62%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + K++ L+KL+ +G ++L+FS R+LDILE + + Y + R+DGST R
Sbjct: 498 VYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDR 557
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+DD+N+ SK+ VFL++TRAGGLG+NL SA+ VV++D +WNP DLQA DR+ R GQ
Sbjct: 558 IQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQ 617
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKLEKRYFEGVQDCKE 681
K+ V VFRL++ S+EE + R K +L + + + + E D K+
Sbjct: 618 KKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKKENKADSKD 669
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 398 (145.2 bits), Expect = 2.7e-63, Sum P(4) = 2.7e-63
Identities = 94/254 (37%), Positives = 149/254 (58%)
Query: 136 RLLEHQREGVKFLYKLYKN-KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDN 194
+L E+Q+EG+ FLY LY++ + GGIL DDMGLGKT+Q IAFL+ +F D++++
Sbjct: 95 QLYEYQKEGIAFLYSLYRDGRRGGILADDMGLGKTVQIIAFLSGMF------DASLVN-- 146
Query: 195 KVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEACGVE----VL 249
+VL+I P+S+I W EF +W+ V +HGP++D L C ++ V+
Sbjct: 147 ------HVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRNL--CRIQQRNGVI 198
Query: 250 ITSFDSYRIHGSILSEVN-----WEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
IT++ + LS +N W+ VI+DEAH++K+ +K + + NRI LTGT
Sbjct: 199 ITTYQMLINNWQQLSSLNGQEFLWDYVILDEAHKIKSSSTKSAICARAIPASNRILLTGT 258
Query: 305 IMQNKIMELYNLFDWVAPGSL-GTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363
+QN + EL++LFD+ GSL GT F+ Y+ P+ + A + + ++L+
Sbjct: 259 PIQNNLQELWSLFDFACQGSLLGTLRTFKMEYENPITRAREKDATPGEKALGFKISENLM 318
Query: 364 AVLRKYLLRRTKEE 377
A+++ Y LRRTKEE
Sbjct: 319 AIIKPYFLRRTKEE 332
Score = 334 (122.6 bits), Expect = 2.7e-63, Sum P(4) = 2.7e-63
Identities = 78/204 (38%), Positives = 122/204 (59%)
Query: 485 LASAVFGPDIDLVGGNAQNESFIG-LSD---VKSCGKMRALEKLMYSWASKGDKILLFSY 540
L +A F ++ G ++ + I +SD ++ GKM L L+ +G + L+FS
Sbjct: 427 LGAAKFSVQDEIEGEDSSDVDHIDQISDDTLMEESGKMLFLMDLLKKLRDEGHQTLVFSQ 486
Query: 541 SVRMLDILEKFLIRKGYSFSRLDGSTPSNL--RQSLVDDFNSSPSKQVFLISTRAGGLGL 598
S R+L+I+E+ L + + R+DG T ++L R+ + F + VFL++T+ GG+GL
Sbjct: 487 SRRILNIIERLLKNRHFKILRIDG-TITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGL 545
Query: 599 NLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQ 658
L +A+RVVIFDP+WNPA D QA DR +R GQK +V+V+RL++ G++EE +Y RQV+K
Sbjct: 546 TLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDS 605
Query: 659 LSNIAVSGKLEK-RYFEGVQDCKE 681
L K RYF Q+ +E
Sbjct: 606 LIRQTTGDKKNPFRYFSK-QELRE 628
Score = 55 (24.4 bits), Expect = 2.7e-63, Sum P(4) = 2.7e-63
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 386 KEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRL 437
K D +++ + LQ+ YR+ + L I K+L SPL ++ K+L
Sbjct: 364 KNDLIIWIRLVPLQEEIYRKFVSLDHI-----KELLMETRSPLAELGVLKKL 410
Score = 44 (20.5 bits), Expect = 4.5e-26, Sum P(4) = 4.5e-26
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 55 LGETYNFSLPQQNPETR-REK--APVEKS 80
LG F + +NP TR REK P EK+
Sbjct: 280 LGTLRTFKMEYENPITRAREKDATPGEKA 308
Score = 40 (19.1 bits), Expect = 2.7e-63, Sum P(4) = 2.7e-63
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 776 NDDIVNKQPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLAS 824
NDD V P EE P LS + + + ++ + LAS
Sbjct: 809 NDDFVTTLPKGCGDVEEIFPDSLSGMALQKEASQEGFMQESEQESPLAS 857
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 403 (146.9 bits), Expect = 6.0e-63, Sum P(2) = 6.0e-63
Identities = 100/347 (28%), Positives = 181/347 (52%)
Query: 108 DHTGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNK-----HGGILGD 162
+H L KD + ++ P + L HQR+GVKF++ HG I+ D
Sbjct: 174 EHLSEHAQLKEDKDRKVHVVADPV-VGKILRPHQRDGVKFMWDCVTGINIPEFHGCIMAD 232
Query: 163 DMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW- 221
+MGLGKT+Q I+ L + + + T+ K +I+CPSS+++NW+ E +W
Sbjct: 233 EMGLGKTLQCISLLWTLLRQSPDACPTVSKS---------IIVCPSSLVKNWDKEIKKWL 283
Query: 222 -STFNVSIYHGPNRDMILEKLEA--------CGVEVLITSFDSYRIHGSILSEVNWEIVI 272
+ N R+ I+ L + C + VLI S++++R++ +IL + IVI
Sbjct: 284 GTRLNAMPVDSGKREQIIACLNSFMADSKMRCAIPVLIISYETFRLYANILHSGDVGIVI 343
Query: 273 VDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFR 332
DE HRLKN ++ Y A LK R+ ++GT +QN ++E ++L ++V PG LGT FR
Sbjct: 344 CDEGHRLKNSENLTYQALSGLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASEFR 403
Query: 333 EFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVF 392
+ ++ + G+ A + +E+ + +++++ K ++RRT +L + K ++++
Sbjct: 404 KKFENAILKGRDADASSEDQKKGEEKTKEMISLVEKCIIRRTSALLTKYLPV-KYEHIIC 462
Query: 393 CTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDN 439
C S LQ+ Y +L++ + ++ KD + S L+ + K+L N
Sbjct: 463 CKNSTLQETLYNKLIECEKQNRIVEKDKGATA-SALSFITHLKKLCN 508
Score = 321 (118.1 bits), Expect = 6.0e-63, Sum P(2) = 6.0e-63
Identities = 74/179 (41%), Positives = 109/179 (60%)
Query: 504 ESFIGLS-DVKSCGKMRALEKLM-YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSR 561
ESF S D GKM+ L+ ++ + + DK +L S + +D + +GY F R
Sbjct: 534 ESFNPKSFDPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMELCKLRGYDFVR 593
Query: 562 LDGSTPSNLRQSLVDDFNSSPSKQVF--LISTRAGGLGLNLVSANRVVIFDPNWNPAQDL 619
LDGS R +VD FN P+ +F L+S++AGG GLNL+ ANR+V+FDP+WNPA D
Sbjct: 594 LDGSMSIKQRSKIVDTFND-PASTIFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPANDD 652
Query: 620 QAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKRYFEGVQ 677
QA R +R GQK+ ++RLL+ GS+EE ++ RQ +K+ LS+ V +G+ R+F Q
Sbjct: 653 QAMARVWRDGQKKMCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDAGEDVARHFSSEQ 711
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 367 (134.2 bits), Expect = 3.1e-62, Sum P(2) = 3.1e-62
Identities = 95/306 (31%), Positives = 154/306 (50%)
Query: 119 SKDGEYPIIQVPASINC--RLLEHQREGVKFLYKLY-----KNKHGGILGDDMGLGKTIQ 171
+K G +P++ V + L HQ+EG+ FLY+ + G IL D+MGLGKT+Q
Sbjct: 278 NKKG-FPVVDVVIDPHLVYHLRPHQKEGIMFLYECVMGMRVNGRCGAILADEMGLGKTLQ 336
Query: 172 TIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYH 230
I+ + + + ++K LI+ P S++ NW EF +W + + I+
Sbjct: 337 CISLIWTLQCQGPYGGKPVVKKT--------LIVTPGSLVNNWRKEFQKWLGSERIKIFP 388
Query: 231 GPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMAC 290
+ E + VLI S++ + V + ++I DE HRLKN K A
Sbjct: 389 VDQDHKVEEFTRSPFYSVLIISYEMLLRSLDQIKNVKFGLLICDEGHRLKNSAIKTTAAL 448
Query: 291 LELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPER 350
+ L R+ LTGT +QN + E + L D+V PG LG+ +R+ Y+EP+ ++ +A E
Sbjct: 449 ISLSCEKRVILTGTPVQNDLQEFFALIDFVNPGILGSLSFYRKVYEEPIIISRQPSASEE 508
Query: 351 FIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLP 410
++ ++R L + ++LRRT +E I + K +NVVFC LQ YR+LL
Sbjct: 509 EKKLGEKRAVELTCLTGLFILRRT-QEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQ 567
Query: 411 EIQ-CL 415
++ CL
Sbjct: 568 AVRFCL 573
Score = 355 (130.0 bits), Expect = 3.1e-62, Sum P(2) = 3.1e-62
Identities = 93/273 (34%), Positives = 151/273 (55%)
Query: 406 LLQLPEIQCLINKDLPCS------CGSPLTQVECCKRLDNLDGCDSCPFCLV-----LPC 454
L L Q +INK LP C Q+E ++L N C L+ L C
Sbjct: 526 LFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQAVRFCLQGLLGNSPHLIC 585
Query: 455 LVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKS 514
+ L+++ NH L+ + +++ D + +++ +D+ + F S+ +S
Sbjct: 586 IGALKKLCNHPCLLFNSIKEKECSSTWDGKEEKSLYEALLDVFPADYNPLMF---SEEES 642
Query: 515 CGKMRALEKLM--YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
GK++ L KL+ +K++L S + LDIL++ R GY+++RLDG TP + RQ
Sbjct: 643 -GKLQVLLKLLAVIHELRPTEKVVLVSNYTQTLDILQEVCKRHGYTYTRLDGQTPVSQRQ 701
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+VD FNS S +FL+S++AGG+GLNL+ + ++++D +WNPA D+QA R +R GQK
Sbjct: 702 QIVDSFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 761
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
V ++RLL+ G++EE +Y RQ+ KQ LS V
Sbjct: 762 NPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVV 794
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 387 (141.3 bits), Expect = 4.6e-62, Sum P(3) = 4.6e-62
Identities = 90/252 (35%), Positives = 146/252 (57%)
Query: 136 RLLEHQREGVKFLYKLYKN-KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDN 194
+L EHQ+EG+ FLY LYKN + GGIL DDMGLGKT+Q IAFL+ +F D++++
Sbjct: 95 KLFEHQKEGIAFLYSLYKNGRKGGILADDMGLGKTVQIIAFLSGMF------DASLVN-- 146
Query: 195 KVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEACGVE--VLIT 251
+VL+I P+++I W EF++W+ V +HG +++ + L V+IT
Sbjct: 147 ------HVLLIMPTNLINTWVKEFAKWTPGMRVKTFHGSSKNERIRNLTRIQQRNGVVIT 200
Query: 252 SFDSYRIHGSILSEVN-----WEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIM 306
++ + L+ N W+ VI+DEAH++K+ +K + + NR+ LTGT +
Sbjct: 201 TYQMLLNNWQQLASFNGQAFVWDYVILDEAHKIKSASTKSAVCARAVPASNRLLLTGTPI 260
Query: 307 QNKIMELYNLFDWVAPGSL-GTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365
QN + EL++LFD+ GSL GT + F+ Y+ P+ + A + + ++L+ +
Sbjct: 261 QNNLQELWSLFDFACQGSLLGTLKTFKMEYENPIIRAREKDATPGEKALGFKMSENLMEI 320
Query: 366 LRKYLLRRTKEE 377
++ Y LRRTKEE
Sbjct: 321 IKPYFLRRTKEE 332
Score = 329 (120.9 bits), Expect = 4.6e-62, Sum P(3) = 4.6e-62
Identities = 80/204 (39%), Positives = 120/204 (58%)
Query: 485 LASAVFGPDIDLVGGNAQNESFIG-LSD---VKSCGKMRALEKLMYSWASKGDKILLFSY 540
L + F + + +A N I LSD ++ GKM L L+ +G + L+FS
Sbjct: 427 LGTVTFSAEDENEQEDASNMGSIDHLSDNALMQESGKMIFLMALLERLQDEGHQTLVFSQ 486
Query: 541 SVRMLDILEKFLIRKGYSFSRLDGSTPSNL--RQSLVDDFNSSPSKQVFLISTRAGGLGL 598
S ++L+I+E+ L K + R+DG T ++L R+ + F + VFL++T+ GG+GL
Sbjct: 487 SRQILNIIERLLKNKHFKTLRIDG-TVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGL 545
Query: 599 NLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQ 658
L +A+RVVIFDP+WNPA D QA DR +R GQK +V+V+RL++ G++EE +Y RQV+K
Sbjct: 546 TLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDS 605
Query: 659 LSNIAVSGKLEK-RYFEGVQDCKE 681
L K RYF Q+ KE
Sbjct: 606 LIRQTTGDKKNPFRYFTK-QELKE 628
Score = 56 (24.8 bits), Expect = 4.6e-62, Sum P(3) = 4.6e-62
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 386 KEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRL 437
K D +V+ + LQ+ YR+ + L I K+L SPL ++ K+L
Sbjct: 364 KNDLIVWIRLVPLQEEIYRKFVSLDHI-----KELLMETRSPLAELGVLKKL 410
Score = 41 (19.5 bits), Expect = 5.0e-32, Sum P(3) = 5.0e-32
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 610 DPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE 669
+ NW AQ+ +Q R + G K RLL+ + E + ++ +S S + E
Sbjct: 723 EENWLKAQEFPSQQR--KKGNKPQPQPSRLLANPTQVEAISSQMA---SISIYDQSTESE 777
Query: 670 KRYFEGVQDCKEFQGE 685
+ D QG+
Sbjct: 778 PQELSEAHDVTSLQGD 793
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 415 (151.1 bits), Expect = 4.9e-62, Sum P(4) = 4.9e-62
Identities = 78/162 (48%), Positives = 116/162 (71%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
K GKM +E L+ W +G ++LLFS S +MLDILE FL + YS+ ++DG+T RQ
Sbjct: 827 KRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQ 886
Query: 573 SLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
L+ +N S VFL++TR GGLG+NL ANRV+I+DP+WNP+ D QA++R++R GQK+
Sbjct: 887 PLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKK 946
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFE 674
V V+RLL+AG++EE +Y RQ++KQ L+N + ++R+F+
Sbjct: 947 QVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFK 988
Score = 318 (117.0 bits), Expect = 4.9e-62, Sum P(4) = 4.9e-62
Identities = 74/250 (29%), Positives = 130/250 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRW-STFNVSIYH--GP---NRDMILEKLEACGVEVLITSF 253
G +I+CP++V+ W EF W F V++ H G ++ ++ + C +LITS+
Sbjct: 558 GPTIIVCPTTVMHQWVKEFHTWWPAFRVAVLHETGSFTHKKEKLVRDIARCH-GILITSY 616
Query: 254 DSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMEL 313
R+ +S +W VI+DE H+++N + + +AC + +T +RI L+G+ MQN + EL
Sbjct: 617 SYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLREL 676
Query: 314 YNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRR 373
++LFD++ PG LGT F E + P+ G A ++ A + L + YLLRR
Sbjct: 677 WSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRR 736
Query: 374 TKEETIGHLMM-GKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVE 432
K + L + K + V+FC ++D Q + Y+ + E+ ++N ++ G + +
Sbjct: 737 MKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGEMQIFSGLVALR-K 795
Query: 433 CCKRLDNLDG 442
C D G
Sbjct: 796 ICNHPDLFSG 805
Score = 48 (22.0 bits), Expect = 4.9e-62, Sum P(4) = 4.9e-62
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 455 LVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFG 491
LV L++I NH +L P++ K D EL FG
Sbjct: 790 LVALRKICNHPDLFSGGPKNL--KGIPDEELGEDQFG 824
Score = 40 (19.1 bits), Expect = 5.5e-22, Sum P(3) = 5.5e-22
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 468 IKPNPRDEPDKQRKDAE 484
++PN + + K R+DA+
Sbjct: 1188 LRPNQKPKSSKHRRDAK 1204
Score = 37 (18.1 bits), Expect = 4.9e-62, Sum P(4) = 4.9e-62
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 185 SSDSTILKDNKVDKKG 200
S S+ L +NK D++G
Sbjct: 305 SEPSSALNENKPDERG 320
>TAIR|locus:2094083 [details] [associations]
symbol:RAD54 "homolog of RAD54" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0010332 "response to gamma
radiation" evidence=IEP;RCA] [GO:0006302 "double-strand break
repair" evidence=RCA] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0007140 "male meiosis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0010332 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0045003
HOGENOM:HOG000204521 KO:K10875 EMBL:DQ912973 EMBL:AB250666
IPI:IPI00531645 RefSeq:NP_188552.3 UniGene:At.53386 SMR:Q0PCS3
IntAct:Q0PCS3 STRING:Q0PCS3 EnsemblPlants:AT3G19210.1 GeneID:821455
KEGG:ath:AT3G19210 TAIR:At3g19210 InParanoid:Q0PCS3 OMA:SDTHDRF
ProtClustDB:CLSN2693236 Genevestigator:Q0PCS3 Uniprot:Q0PCS3
Length = 910
Score = 389 (142.0 bits), Expect = 7.4e-62, Sum P(2) = 7.4e-62
Identities = 103/313 (32%), Positives = 163/313 (52%)
Query: 114 EPLVL---SKDGEYPIIQVPA-SINCRLLE-HQREGVKFLYKLYKNKHGG------ILGD 162
EPLVL +DG + + S+ + L HQREGV+F++ HG IL D
Sbjct: 152 EPLVLWQSEEDGMSNVTTIMVHSVLVKFLRPHQREGVQFMFDCVSGLHGSANINGCILAD 211
Query: 163 DMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS 222
DMGLGKT+Q+I L + + D T + KK +I+ P+S++ NWE E +W
Sbjct: 212 DMGLGKTLQSITLLYTLLC--QGFDGTPMV-----KKA--IIVTPTSLVSNWEAEIKKWV 262
Query: 223 TFNVSIYH--GPNRDMILEKLEA-----CGVEVLITSFDSYRIHGS-ILSEVNWEIVIVD 274
+ + RD +L +++ ++VLI S++++R+H S + +++I D
Sbjct: 263 GDRIQLIALCESTRDDVLSGIDSFTRPRSALQVLIISYETFRMHSSKFCQSESCDLLICD 322
Query: 275 EAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREF 334
EAHRLKN+++ A L + R+ L+GT MQN + E + + ++ PGSLG HFR +
Sbjct: 323 EAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHY 382
Query: 335 YDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCT 394
Y+ P+ G+ TA E +A +R L + + +++LRRT HL K VV C
Sbjct: 383 YEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPP-KIIEVVCCK 441
Query: 395 MSDLQKRAYRRLL 407
M+ LQ Y +
Sbjct: 442 MTTLQSTLYNHFI 454
Score = 328 (120.5 bits), Expect = 7.4e-62, Sum P(2) = 7.4e-62
Identities = 71/154 (46%), Positives = 99/154 (64%)
Query: 512 VKSCGKMRALEKLMYSWASK-GDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNL 570
V+ GKM L +L+ + K D+I+L S + LD+ + + Y F RLDGST +
Sbjct: 530 VELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISK 589
Query: 571 RQSLVDDFNSSPSKQ--VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRF 628
RQ LV+ N P+K FL+S++AGG GLNL+ ANR+V+FDP+WNPA D QA R +R
Sbjct: 590 RQKLVNRLND-PTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRD 648
Query: 629 GQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNI 662
GQK+ V V+R LS G++EE VY RQ+ K+ L +
Sbjct: 649 GQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKV 682
Score = 38 (18.4 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 461 ISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGN 500
IS +L+ N ++P K L+S G ++L+G N
Sbjct: 587 ISKRQKLV--NRLNDPTKDEFAFLLSSKAGGCGLNLIGAN 624
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 390 (142.3 bits), Expect = 8.2e-62, Sum P(2) = 8.2e-62
Identities = 100/311 (32%), Positives = 173/311 (55%)
Query: 114 EPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNK-----HGGILGDDMGLG 167
+ L K+ + P+ V I ++L HQREGVKFL++ ++ HG I+ D+MGLG
Sbjct: 131 DQLKFDKE-KLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLG 189
Query: 168 KTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVS 227
KT+Q I + + +S D ++DK +++ PSS+++NW E +W +
Sbjct: 190 KTLQCITLMWTLLR--QSPDCK----PEIDK---AVVVSPSSLVRNWYNEVGKWLGGRIQ 240
Query: 228 --IYHGPNRDMILEKLEAC----GVEV----LITSFDSYRIHGSILSEVNWEIVIVDEAH 277
G ++D I +KLE G V LI S++++R+H +L + + +VI DE H
Sbjct: 241 PLAIDGGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSVGLVICDEGH 300
Query: 278 RLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDE 337
RLKN +++ Y A L T R+ ++GT +QN ++E ++L +V G LGT + F++ ++
Sbjct: 301 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKHFEL 360
Query: 338 PLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSD 397
P+ G+ A E R+ +ER + L +++ + L+RRT + +L + K + VV C ++
Sbjct: 361 PILKGRDAAASEEDRRVGEERLRELTSIVNRCLIRRTSDILSKYLPV-KIEQVVCCRLTP 419
Query: 398 LQKRAYRRLLQ 408
LQ Y+R L+
Sbjct: 420 LQIELYKRFLR 430
Score = 322 (118.4 bits), Expect = 8.2e-62, Sum P(2) = 8.2e-62
Identities = 70/169 (41%), Positives = 109/169 (64%)
Query: 516 GKMRALEKLMYSWASKG-DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GKM L+ ++ S+ DK++L S + LD+ EK + Y + RLDG+ R +
Sbjct: 497 GKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKV 556
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
V+ FN+ S VF++S++AGG GLNL+ ANR+V+FDP+WNPA D QA R +R GQK+
Sbjct: 557 VERFNNPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 616
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYFEGVQDCKE 681
++RLLSAG++EE ++ RQ +K+ LS+ V + + +R+F + + KE
Sbjct: 617 CYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS-LGELKE 664
Score = 38 (18.4 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 117 VLSKDGEYPIIQVPASINCRLLEHQREGVK 146
+LSK + PI + R L +R GV+
Sbjct: 78 ILSKPFKIPIPNYQGPLGSRALGLKRAGVR 107
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 370 (135.3 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 94/308 (30%), Positives = 155/308 (50%)
Query: 117 VLSKDGEYPIIQVPAS--INCRLLEHQREGVKFLYKLY-----KNKHGGILGDDMGLGKT 169
+ +K G P++ V I L HQREG+ FLY+ + G IL D+MGLGKT
Sbjct: 282 MFNKAG-LPVVDVVVDPYIANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKT 340
Query: 170 IQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSI 228
+Q I+ + + + +LK LI+ P S+++NW+ EF +W + + +
Sbjct: 341 LQCISLVWTLLRQGVYGCKPVLKR--------ALIVTPGSLVKNWKKEFQKWLGSERIKV 392
Query: 229 YHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYM 288
+ + E + + V+I S++ + + + ++I DE HRLKN K
Sbjct: 393 FTVDQDHKVEEFISSPLYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTT 452
Query: 289 ACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAP 348
A L RI LTGT +QN + E Y L ++V PG LG+ +R+ Y+EP+ + +A
Sbjct: 453 ALTNLSCERRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSAT 512
Query: 349 ERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
+ + ++R L + ++LRRT +E I + K++N++FC + LQ YR+LL
Sbjct: 513 KEEKDLGEKRAAELTRLTGLFILRRT-QEVINKFLPPKKENIIFCQPTALQLELYRKLLS 571
Query: 409 LPEIQ-CL 415
I CL
Sbjct: 572 SRVISSCL 579
Score = 346 (126.9 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 79/216 (36%), Positives = 136/216 (62%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSD 511
L C+ L+++ NH L+ +++ + D + S+++ D+ + +++F S+
Sbjct: 589 LICIGALKKLCNHPCLLFKALKEKCCDPKSDEHVESSLYEGLTDVFPQDYTSDTF---SE 645
Query: 512 VKSCGKMRALEKLMYSWA--SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSN 569
+ S GK++ L KL+ + S ++++L S + L++L + GYS++RLDG+TP +
Sbjct: 646 IDS-GKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVS 704
Query: 570 LRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRF 628
RQ +VD FNS S +FL+S++AGG+GLNLV A+ ++++D +WNPA D+QA R +R
Sbjct: 705 QRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRD 764
Query: 629 GQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
GQK V ++RLL+ G++EE +Y RQ+ KQ LS V
Sbjct: 765 GQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVV 800
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 388 (141.6 bits), Expect = 2.3e-61, Sum P(3) = 2.3e-61
Identities = 103/336 (30%), Positives = 181/336 (53%)
Query: 114 EPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNK-----HGGILGDDMGLG 167
+ L L K+ + P+ V I ++L HQREGVKFL++ ++ HG I+ D+MGLG
Sbjct: 130 DQLKLDKE-KLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLG 188
Query: 168 KTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVS 227
KT+Q I + + + ++DK +++ PSS+++NW E +W +
Sbjct: 189 KTLQCITLMWTLLRQSPECKP------EIDK---AVVVSPSSLVKNWYNEVGKWLGGRIQ 239
Query: 228 --IYHGPNRDMILEKLEAC----GVEV----LITSFDSYRIHGSILSEVNWEIVIVDEAH 277
G ++D I +KLE G V LI S++++R+H +L + + +VI DE H
Sbjct: 240 PLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGH 299
Query: 278 RLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDE 337
RLKN +++ Y A L T R+ ++GT +QN ++E ++L +V G LGT F++ ++
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFEL 359
Query: 338 PLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSD 397
P+ G+ A E ++ +ER + L +++ + L+RRT + +L + K + VV C ++
Sbjct: 360 PILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPV-KIEQVVCCRLTP 418
Query: 398 LQKRAYRRLL-QLPEIQCLINKDLPCSCGSPLTQVE 432
LQ Y+R L Q + L+ + S S +T ++
Sbjct: 419 LQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLK 454
Score = 325 (119.5 bits), Expect = 2.3e-61, Sum P(3) = 2.3e-61
Identities = 71/169 (42%), Positives = 109/169 (64%)
Query: 516 GKMRALEKLMYSWASKG-DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GKM L+ ++ S+ DK++L S + LD+ EK + Y + RLDG+ R +
Sbjct: 496 GKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKV 555
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
V+ FNS S VF++S++AGG GLNL+ ANR+V+FDP+WNPA D QA R +R GQK+
Sbjct: 556 VERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 615
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYFEGVQDCKE 681
++RLLSAG++EE ++ RQ +K+ LS+ V + + +R+F + + KE
Sbjct: 616 CYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS-LGELKE 663
Score = 38 (18.4 bits), Expect = 2.3e-61, Sum P(3) = 2.3e-61
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 117 VLSKDGEYPIIQVPASINCRLLEHQREGVK 146
+LSK + PI + R L +R GV+
Sbjct: 77 ILSKPFKVPIPNYQGPLGSRALGLKRAGVR 106
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 371 (135.7 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 95/301 (31%), Positives = 152/301 (50%)
Query: 124 YPIIQVPASINC--RLLEHQREGVKFLYKLY-----KNKHGGILGDDMGLGKTIQTIAFL 176
+P++ V + L HQ+EG+ FLY+ + G IL D+MGLGKT+Q I+ +
Sbjct: 281 FPVVDVVIDPHLVYYLRPHQKEGITFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLI 340
Query: 177 AAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFN-VSIYHGPNRD 235
+ + I+K LI+ P S++ NW+ EF +W + I+
Sbjct: 341 WTLQCQGPYGGKPIVKKT--------LIVTPGSLVNNWKKEFQKWLGIERIKIFTVDQDH 392
Query: 236 MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKT 295
+ E ++ VLI S++ + V ++++I DE HRLKN K A + L
Sbjct: 393 KVEEFTKSPFYSVLIISYEMLLRSLDQIKNVKFDLLICDEGHRLKNSTIKTTTALISLSC 452
Query: 296 RNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIA 355
RI LTGT +QN + E + L D+V PG LG+ +R+ Y+EP+ ++ +A E +
Sbjct: 453 EKRIILTGTPVQNDLQEFFTLIDFVNPGILGSLSAYRKIYEEPIIISRQPSASEEERELG 512
Query: 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQ-C 414
++R L + ++LRRT +E I + K +NVVFC LQ YR+LL ++ C
Sbjct: 513 EQRAAELTCLTGLFILRRT-QEVINQYLPPKIENVVFCRPGALQIALYRKLLNSQAVRFC 571
Query: 415 L 415
L
Sbjct: 572 L 572
Score = 342 (125.4 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 68/152 (44%), Positives = 102/152 (67%)
Query: 516 GKMRALEKLM--YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQS 573
GK++ L KL+ +K++L S R LDIL++ R GY+++RLDG TP + RQ
Sbjct: 642 GKLQVLSKLLAVIRELRPAEKVVLVSNYTRTLDILQEVCKRHGYAYTRLDGQTPISQRQQ 701
Query: 574 LVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
+VD FNS S +FL+S++AGG+GLNL+ + ++++D +WNPA D+QA R +R GQK
Sbjct: 702 IVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKH 761
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
V ++RLL+ G++EE +Y RQ+ KQ LS V
Sbjct: 762 PVHIYRLLTTGTIEEKIYQRQISKQGLSGAVV 793
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 387 (141.3 bits), Expect = 2.9e-61, Sum P(2) = 2.9e-61
Identities = 98/311 (31%), Positives = 172/311 (55%)
Query: 114 EPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNK-----HGGILGDDMGLG 167
+ + L K+ + P+ V I ++L HQREGVKFL++ ++ HG I+ D+MGLG
Sbjct: 130 DQMKLDKE-KLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLG 188
Query: 168 KTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVS 227
KT+Q I + + + ++DK +++ PSS+++NW E +W +
Sbjct: 189 KTLQCITLIWTLLRQSPECKP------EIDK---AVVVSPSSLVKNWYNEVGKWLGGRIQ 239
Query: 228 --IYHGPNRDMILEKLEAC----GVEV----LITSFDSYRIHGSILSEVNWEIVIVDEAH 277
G ++D I +KLE GV V LI S++++R+H +L + + +VI DE H
Sbjct: 240 PLAIDGGSKDEIDQKLEGFMNQRGVRVPSPILIISYETFRLHVGVLQKGSVGLVICDEGH 299
Query: 278 RLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDE 337
RLKN +++ Y A L T R+ ++GT +QN ++E ++L +V G LGT F++ ++
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFEL 359
Query: 338 PLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSD 397
P+ G+ A E ++ +ER + L +++ + L+RRT + +L + K + VV C ++
Sbjct: 360 PILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPV-KIEQVVCCRLTP 418
Query: 398 LQKRAYRRLLQ 408
LQ Y+R L+
Sbjct: 419 LQTELYKRFLK 429
Score = 320 (117.7 bits), Expect = 2.9e-61, Sum P(2) = 2.9e-61
Identities = 70/169 (41%), Positives = 109/169 (64%)
Query: 516 GKMRALEKLMYSWASKG-DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GKM L+ ++ S+ DK++L S + LD+ EK + Y + RLDG+ R +
Sbjct: 496 GKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKV 555
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
V+ FN+ S VF++S++AGG GLNL+ ANR+V+FDP+WNPA D QA R +R GQK+
Sbjct: 556 VERFNNPLSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 615
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYFEGVQDCKE 681
++RLLSAG++EE ++ RQ +K+ LS+ V + + +R+F + + KE
Sbjct: 616 CYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS-LGELKE 663
Score = 37 (18.1 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 117 VLSKDGEYPIIQVPASINCRLLEHQREGVK 146
+LSK + PI + R L +R GV+
Sbjct: 77 ILSKPFKIPIPNYQGPLGFRALGLKRAGVR 106
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 376 (137.4 bits), Expect = 3.2e-61, Sum P(3) = 3.2e-61
Identities = 89/252 (35%), Positives = 144/252 (57%)
Query: 136 RLLEHQREGVKFLYKLYKN-KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDN 194
+L EHQ+EG+ FLY LYK+ + GGIL DDMGLGKT+Q IAFL+ +F D++++
Sbjct: 96 KLFEHQKEGIAFLYSLYKDGRKGGILADDMGLGKTVQIIAFLSGMF------DASLVN-- 147
Query: 195 KVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEACGVE--VLIT 251
+VL+I P+++I W EF++W+ V +HG ++ L V+IT
Sbjct: 148 ------HVLLIMPTNLINTWVNEFAKWTPGMRVKTFHGSSKSERTRSLTRIQQRNGVVIT 201
Query: 252 SFDSYRIHGSILSEVN-----WEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIM 306
++ + L+ N W+ VI+DEAH++K+ +K + + NR+ LTGT +
Sbjct: 202 TYQMLLNNWQQLASFNGQAFVWDYVILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPV 261
Query: 307 QNKIMELYNLFDWVAPGSL-GTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365
QN + EL++LFD+ GSL GT + F+ Y+ P+ + A + + ++L+ +
Sbjct: 262 QNNLQELWSLFDFACQGSLLGTLKTFKMEYEHPIIRAREKDATPGEKALGLKISENLMEI 321
Query: 366 LRKYLLRRTKEE 377
++ Y LRRTKEE
Sbjct: 322 IKPYFLRRTKEE 333
Score = 333 (122.3 bits), Expect = 3.2e-61, Sum P(3) = 3.2e-61
Identities = 72/173 (41%), Positives = 108/173 (62%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNL- 570
++ GKM L L+ +G + L+FS S+++L+I+E+ L K + R+DG T ++L
Sbjct: 459 IQESGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIERLLKNKHFKTLRIDG-TVTHLW 517
Query: 571 -RQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFG 629
R+ + F + VFL++T+ GG+GL L +A RVVIFDP+WNPA D QA DR +R G
Sbjct: 518 EREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIG 577
Query: 630 QKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEK-RYFEGVQDCKE 681
QK +V+V+RL++ G++EE +Y RQV+K L K RYF Q+ KE
Sbjct: 578 QKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFTK-QELKE 629
Score = 56 (24.8 bits), Expect = 3.2e-61, Sum P(3) = 3.2e-61
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 386 KEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRL 437
K D +V+ + LQ+ YR+ + L I K+L SPL ++ K+L
Sbjct: 365 KNDLIVWIRLLPLQEEIYRKFVSLDHI-----KELLMETRSPLAELGVLKKL 411
Score = 42 (19.8 bits), Expect = 6.9e-31, Sum P(3) = 6.9e-31
Identities = 23/94 (24%), Positives = 46/94 (48%)
Query: 462 SNHLELIKP-NPRDEPDKQRKDAELASAVFGPDIDLV--GGNAQNESFIGLS-DVKSCGK 517
S++L + +P +P + + + + P DL GN ES + ++K CGK
Sbjct: 1148 SSNLTMSEPTSPAPQSSPCAPEPSSSDPMPDPPQDLAVEAGN-DYESLVARGKELKECGK 1206
Query: 518 MR-ALEKLMYSWASKG--DKILLFSYSV-RMLDI 547
++ AL L+ + K +++L + S+ + L+I
Sbjct: 1207 IQEALNCLVKALDIKSADPEVMLMTLSLYKQLNI 1240
Score = 41 (19.5 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 357 ERKQHLVAVLRKYLLRRTKEETIGHLM-MGKEDNVVFCTMSDLQKRAYRRLLQ 408
E K + V + L+R+T E K++ T+ DLQK A + LQ
Sbjct: 594 EEKIYRRQVFKDSLIRQTTGEKKNPFRYFTKQELKELFTVGDLQKSATQMQLQ 646
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 388 (141.6 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 91/252 (36%), Positives = 145/252 (57%)
Query: 136 RLLEHQREGVKFLYKLYKN-KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDN 194
+L EHQ+EG+ FLY LY++ + GGIL DDMGLGKT+Q IAFL+ +F D++++
Sbjct: 95 QLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMF------DASLVN-- 146
Query: 195 KVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEACGVE--VLIT 251
+VL+I P+++I W EF +W+ V +HGP++D L V+IT
Sbjct: 147 ------HVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIIT 200
Query: 252 SFDSYRIHGSILS-----EVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIM 306
++ + LS E W+ VI+DEAH++K +K + + NR+ LTGT +
Sbjct: 201 TYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPI 260
Query: 307 QNKIMELYNLFDWVAPGSL-GTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365
QN + EL++LFD+ GSL GT + F+ Y+ P+ + A + + ++L+A+
Sbjct: 261 QNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAI 320
Query: 366 LRKYLLRRTKEE 377
++ Y LRRTKE+
Sbjct: 321 IKPYFLRRTKED 332
Score = 321 (118.1 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 69/172 (40%), Positives = 106/172 (61%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNL- 570
++ GKM L L+ +G + L+FS S ++L+I+E+ L + + R+DG+ L
Sbjct: 456 MEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLE 515
Query: 571 RQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
R+ ++ F + VFL++T+ GG+GL L +A RVVIFDP+WNPA D QA DR +R GQ
Sbjct: 516 REKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQ 575
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEK-RYFEGVQDCKE 681
K +V+V+RL++ G++EE +Y RQV+K L K RYF Q+ +E
Sbjct: 576 KENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSK-QELRE 626
Score = 55 (24.4 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 386 KEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRL 437
K D +++ + LQ+ YR+ + L I K+L SPL ++ K+L
Sbjct: 364 KNDLIIWIRLVPLQEEIYRKFVSLDHI-----KELLMETRSPLAELGVLKKL 410
Score = 44 (20.5 bits), Expect = 6.7e-25, Sum P(3) = 6.7e-25
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 55 LGETYNFSLPQQNPETR-REK--APVEKS 80
LG F + +NP TR REK P EK+
Sbjct: 280 LGTLKTFKMEYENPITRAREKDATPGEKA 308
Score = 39 (18.8 bits), Expect = 7.9e-31, Sum P(2) = 7.9e-31
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 783 QPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKD 827
+P F R+ +E + + SS P +++ +D SL+ D
Sbjct: 322 KPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKND 366
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 381 (139.2 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 98/311 (31%), Positives = 172/311 (55%)
Query: 114 EPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNK-----HGGILGDDMGLG 167
+ L L K+ + P+ V + ++L HQREGV+FL++ ++ HG I+ D+MGLG
Sbjct: 130 DQLKLDKE-KLPVHVVVDPVLSKVLRPHQREGVRFLWECVTSRRIPGSHGCIMADEMGLG 188
Query: 168 KTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVS 227
KT+Q I + + +S D ++DK +++ PSS+++NW E +W +
Sbjct: 189 KTLQCITLMWTLLR--QSPDCK----PEIDK---AVVVSPSSLVKNWYNEVGKWLGGRIQ 239
Query: 228 --IYHGPNRDMILEKLEAC----GVEV----LITSFDSYRIHGSILSEVNWEIVIVDEAH 277
++D I +KLE G V LI S++++R+H +L + + +VI DE H
Sbjct: 240 PLAIDAGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSVGLVICDEGH 299
Query: 278 RLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDE 337
RLKN +++ Y A L T R+ ++GT +QN ++E ++L +V G LGT F++ ++
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGLLGTAHEFKKRFEL 359
Query: 338 PLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSD 397
P+ G+ A E R+ +ER + L +++ + L+RRT + +L + K + VV C ++
Sbjct: 360 PILKGRDAAASEEDRRLGEERLRELTSIVNRCLIRRTSDILSKYLPV-KIEQVVCCRLTP 418
Query: 398 LQKRAYRRLLQ 408
LQ Y+R L+
Sbjct: 419 LQTELYKRFLR 429
Score = 325 (119.5 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 71/169 (42%), Positives = 109/169 (64%)
Query: 516 GKMRALEKLMYSWASKG-DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GKM L+ ++ S+ DK++L S + LD+ EK + Y + RLDG+ R +
Sbjct: 496 GKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKV 555
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
V+ FNS S VF++S++AGG GLNL+ ANR+V+FDP+WNPA D QA R +R GQK+
Sbjct: 556 VERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 615
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYFEGVQDCKE 681
++RLLSAG++EE ++ RQ +K+ LS+ V + + +R+F + + KE
Sbjct: 616 CYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS-LGELKE 663
Score = 38 (18.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 117 VLSKDGEYPIIQVPASINCRLLEHQREGVK 146
+LSK + PI + R L +R GV+
Sbjct: 77 ILSKPFKIPIPNYQGPLGSRALGLKRAGVR 106
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 366 (133.9 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 100/323 (30%), Positives = 167/323 (51%)
Query: 136 RLLE-HQREGVKFLYKLYKNK-----HGGILGDDMGLGKTIQTIAFLAAVFGKD-ESSDS 188
R+L HQ EGVKFLYK + +G I+ D+MGLGKT+Q IA L + + ++
Sbjct: 262 RILRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTLLKQSPQAGKP 321
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW---STFNVSIYHGPN--RDMILEKLEA 243
TI K +I CPSS+++NW E +W I G + +++I+ +
Sbjct: 322 TIEK---------AIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQW 372
Query: 244 CGVE-------VLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTR 296
V VLI S+++ R + L+ +++ DE HRLKN S + A +L +
Sbjct: 373 ASVHGRQVTRPVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQ 432
Query: 297 NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIAD 356
R+ L+GT +QN + E ++L ++ PG LG+R+ FR+ Y+ P+ G+ E+ D
Sbjct: 433 RRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGD 492
Query: 357 ERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLI 416
+ L ++ ++++RRT + +L + K ++VVFC +S+ Q Y+ + PEI
Sbjct: 493 AKLAELAKIVNRFIIRRTNDILSKYLPV-KYEHVVFCNLSEFQLSLYKHFITSPEI---- 547
Query: 417 NKDLPCSCGSPLTQVECCKRLDN 439
NK L + PL + K++ N
Sbjct: 548 NKILRGTGSQPLKAIGLLKKICN 570
Score = 342 (125.4 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 73/167 (43%), Positives = 105/167 (62%)
Query: 511 DVKSCGKMRALEKLMYSWASK-GDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSN 569
D GKM LE+++Y + DKI+L S LD+ E+ +GY RLDG+ N
Sbjct: 605 DSSLSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVN 664
Query: 570 LRQSLVDDFNSSPSKQ--VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFR 627
RQ LVD FN P K VFL+S++AGG G+NL+ ANR+++FDP+WNPA D QA R +R
Sbjct: 665 KRQRLVDTFND-PEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWR 723
Query: 628 FGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYF 673
GQK+ V+R ++ G++EE ++ RQ +KQ LS+ V + +R+F
Sbjct: 724 DGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERHF 770
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 366 (133.9 bits), Expect = 9.7e-61, Sum P(2) = 9.7e-61
Identities = 93/308 (30%), Positives = 155/308 (50%)
Query: 117 VLSKDGEYPIIQVPAS--INCRLLEHQREGVKFLYKLY-----KNKHGGILGDDMGLGKT 169
+ +K G P++ V I L HQREG+ FLY+ + G IL D+MGLGKT
Sbjct: 282 MFNKAG-LPVVDVVVDPYIANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKT 340
Query: 170 IQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSI 228
+Q I+ + + + +LK LI+ P S+++NW+ EF +W + + +
Sbjct: 341 LQCISLVWTLLRQGVYGCKPVLKR--------ALIVTPGSLVKNWKKEFQKWLGSERIKV 392
Query: 229 YHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYM 288
+ + E + + V+I S++ + + + ++I DE HRLKN K
Sbjct: 393 FTVDQDHKVEEFISSPLYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTT 452
Query: 289 ACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAP 348
A L RI LTGT +QN + E Y L ++V PG LG+ +R+ Y+EP+ + +A
Sbjct: 453 ALTNLSCERRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSAT 512
Query: 349 ERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
+ + ++R L + ++LRRT +E I + K++N++FC + LQ Y++LL
Sbjct: 513 KEEKDLGEKRAAELTRLTGLFILRRT-QEVINKFLPPKKENIIFCQPTALQLELYQKLLS 571
Query: 409 LPEIQ-CL 415
I CL
Sbjct: 572 SRVISSCL 579
Score = 342 (125.4 bits), Expect = 9.7e-61, Sum P(2) = 9.7e-61
Identities = 79/218 (36%), Positives = 137/218 (62%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSD 511
L C+ L+++ NH L+ +++ + D + S+++ D+ + +++F S+
Sbjct: 589 LICIGALKKLCNHPCLLFKALKEKCCDPKSDEHVESSLYEGLTDVFPQDYTSDTF---SE 645
Query: 512 VKSCGKMRALEKLMYSW----ASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTP 567
+ S GK++ L KL+ + +S+ ++L S + L++L++ GYS++RLDG+TP
Sbjct: 646 IDS-GKLQVLVKLLAAIRELSSSERQVVVLVSNYTQTLNVLQETCKCYGYSYTRLDGNTP 704
Query: 568 SNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSF 626
+ RQ +VD FNS S +FL+S++AGG+GLNLV A+ ++++D +WNPA D+QA R +
Sbjct: 705 VSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVW 764
Query: 627 RFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
R GQK V ++RLL+ G++EE +Y RQ+ KQ LS V
Sbjct: 765 RDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVV 802
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 363 (132.8 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 94/301 (31%), Positives = 151/301 (50%)
Query: 124 YPIIQVPASINC--RLLEHQREGVKFLYKLY-----KNKHGGILGDDMGLGKTIQTIAFL 176
+PI+ V + L HQREG+ FLY+ + G IL D+MGLGKT+Q I+ +
Sbjct: 177 FPIVDVVIDPHLVYHLRPHQREGIIFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLI 236
Query: 177 AAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD 235
+ + ++K LI+ P S++ NW EF +W + + I+
Sbjct: 237 WTLQCQGPYGGKPVIKKT--------LIVTPGSLVNNWRKEFQKWLGSERIKIFTVDPDH 288
Query: 236 MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKT 295
+ E ++ VLI S++ + + ++++I DE HRLKN K A L
Sbjct: 289 KVEEFTKSPLYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALFSLPC 348
Query: 296 RNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIA 355
RI LTGT +QN + E ++L D+V PG LG+ +R+ Y+EP+ ++ +A + +
Sbjct: 349 EKRIILTGTPVQNDLQEFFSLIDFVNPGILGSLSCYRKIYEEPIITSRQPSASQEEKELG 408
Query: 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQ-C 414
+ R L + ++LRRT +E I + K +NVVFC LQ YR+LL ++ C
Sbjct: 409 ERRACELTCLTGLFILRRT-QEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQAVRFC 467
Query: 415 L 415
L
Sbjct: 468 L 468
Score = 339 (124.4 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 98/281 (34%), Positives = 151/281 (53%)
Query: 406 LLQLPEIQCLINKDLPCS------CGSPLTQVECCKRLDNLDGCDSCPFCLV-----LPC 454
L L Q +INK LP C Q+E ++L N C L+ L C
Sbjct: 421 LFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQAVRFCLQGLMENSSHLIC 480
Query: 455 LVKLQQISNHLELIKPNPR--------DEPDKQRKDAELASAVFGPDIDLVGGNAQNESF 506
+ L+++ NH L+ + + DE +++R +L VF PD + + A+ ES
Sbjct: 481 IGALKKLCNHPCLLFSSVKEKECSSAWDENEERRLYEDLLK-VFPPDYNPLMF-AEEES- 537
Query: 507 IGLSDVKSCGKMRALEKLM--YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDG 564
GK++ L KL+ +K++L S + L+IL++ R GY +RLDG
Sbjct: 538 ---------GKLQVLSKLLAVIHELRPAEKVVLVSNYTQTLNILQEVCRRHGYGCTRLDG 588
Query: 565 STPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQD 623
TP + RQ +VD FNS S +FL+S++AGG+GLNL+ + ++++D +WNPA D+QA
Sbjct: 589 QTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMS 648
Query: 624 RSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
R +R GQK V ++RLL+ G++EE +Y RQ+ KQ LS V
Sbjct: 649 RVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVV 689
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 622 (224.0 bits), Expect = 2.8e-60, Sum P(2) = 2.8e-60
Identities = 179/550 (32%), Positives = 292/550 (53%)
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
+P I+ L ++Q+EGV +L L K + GIL DDMGLGKT+QTI +A+ D +
Sbjct: 1350 IPVPISADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGKTLQTICIVAS----DHYNRQ 1405
Query: 189 TILKDNKVDKKGYV--LIICPSSVIQNWEIEFSRWSTF-NVSIYHGP--NRDMILEKLEA 243
+ +++ K +V LI+CPS++ +W+ E S ++ F VS Y GP R I K++
Sbjct: 1406 KLFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSKMKK 1465
Query: 244 CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303
+V++TS+D R L +++W ++DE H +KN ++KL A L++ +R+ L+G
Sbjct: 1466 S--DVVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSG 1523
Query: 304 TIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363
T +QN ++EL++LFD++ PG LGT + F+E + P+ + + + + +
Sbjct: 1524 TPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIH 1583
Query: 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCS 423
+ ++LRR KE+ + L K +C MSDLQ R+LL Q IN++L
Sbjct: 1584 KQVLPFMLRRLKEDVLADLPP-KIIQDYYCDMSDLQ----RKLLNDFVSQLNINEELEDD 1638
Query: 424 CGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELI--KPNP-RDEPDKQ- 479
+ TQ K+ + L ++++ NH LI + +P R+ KQ
Sbjct: 1639 -ETEKTQGTRKKKSQKAH---------IFQALQYMRKLCNHPALILTEKHPKRNAIVKQL 1688
Query: 480 -RKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLF 538
++++ L P + +G + +G S V S G AL A ++L+F
Sbjct: 1689 AKENSGLHDLKHAPKLTALG-QLLRDCGLGNSSVNSNGIDSALTN-----AVSEHRVLIF 1742
Query: 539 SYSVRMLDILEKFLIRK---GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595
MLD++EK L++ ++ RLDGS RQ V FN+ PS V L++T GG
Sbjct: 1743 CQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGG 1802
Query: 596 LGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVY 655
LGLNL A+ V+ + +WNP +DLQA DR+ R GQK+ V V+RL++ G LEE + Q +
Sbjct: 1803 LGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRF 1862
Query: 656 KQQLSNIAVS 665
K +++ V+
Sbjct: 1863 KMNVASTVVN 1872
Score = 42 (19.8 bits), Expect = 2.8e-60, Sum P(2) = 2.8e-60
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 118 LSKDGEYPIIQVPASINCRLLEHQREGVKFLY-------KLYKNKHGGILGDDMGLGKTI 170
L + G+Y QV A I R Q GV +Y +YK H + +++GL T+
Sbjct: 430 LDRFGDYLADQVVAPI--RESVSQVLGVALIYVPNDSVFSMYKVLHSLVFQNELGLTNTV 487
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 376 (137.4 bits), Expect = 3.2e-60, Sum P(2) = 3.2e-60
Identities = 98/311 (31%), Positives = 166/311 (53%)
Query: 114 EPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNK-----HGGILGDDMGLG 167
+ L L K+ + P+ V I ++L HQREGVKFL++ ++ HG I+ D+MGLG
Sbjct: 130 DQLKLDKE-KLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLG 188
Query: 168 KTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVS 227
KT+Q I + + + I K +++ PSS+++NW E +W +
Sbjct: 189 KTLQCITLMWTLLRQSPECKPEIEK---------AVVVSPSSLVKNWYNEVEKWLGGRIQ 239
Query: 228 --IYHGPNRDMILEKLEAC----GVEV----LITSFDSYRIHGSILSEVNWEIVIVDEAH 277
G ++D I KLE G V LI S++++R+H +L + N +VI DE H
Sbjct: 240 PLAIDGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNVGLVICDEGH 299
Query: 278 RLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDE 337
RLKN +++ Y A L T R+ ++GT +QN ++E ++L +V G LGT F++ ++
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFEL 359
Query: 338 PLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSD 397
P+ + A E + +ER + L+ ++ + L+RRT + +L + K + VV C ++
Sbjct: 360 PILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPV-KIEQVVCCRLTP 418
Query: 398 LQKRAYRRLLQ 408
LQ Y+R L+
Sbjct: 419 LQTELYKRFLR 429
Score = 322 (118.4 bits), Expect = 3.2e-60, Sum P(2) = 3.2e-60
Identities = 71/169 (42%), Positives = 109/169 (64%)
Query: 516 GKMRALEKLMYSWASKG-DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GKM L+ ++ S+ DK++L S + LD+ EK + Y + RLDG+ R +
Sbjct: 496 GKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVRRYLYVRLDGTMSIKKRAKV 555
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
V+ FNS S VF++S++AGG GLNL+ ANR+V+FDP+WNPA D QA R +R GQK+
Sbjct: 556 VERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKI 615
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYFEGVQDCKE 681
++RLLSAG++EE ++ RQ +K+ LS+ V + + +R+F + + KE
Sbjct: 616 CYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS-LGELKE 663
Score = 38 (18.4 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 117 VLSKDGEYPIIQVPASINCRLLEHQREGVK 146
+LSK + PI + R L +R GV+
Sbjct: 77 ILSKPFKVPIPNYQGPLGSRALGLKRAGVR 106
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 372 (136.0 bits), Expect = 3.9e-60, Sum P(2) = 3.9e-60
Identities = 102/336 (30%), Positives = 179/336 (53%)
Query: 114 EPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNK-----HGGILGDDMGLG 167
E L + KD + P+ V + R+L HQREGVKFL+ ++ HG I+ D+MGLG
Sbjct: 119 EQLKIDKD-KVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEMGLG 177
Query: 168 KTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVS 227
KT+Q I + + +S D +++K +++ PSS+++NW E +W +
Sbjct: 178 KTLQCITLMWTLLR--QSPDCK----PEIEK---AMVVSPSSLVRNWYNEVEKWLGGRIQ 228
Query: 228 --IYHGPNRDMILEKLEAC----GVEV----LITSFDSYRIHGSILSEVNWEIVIVDEAH 277
G +++ I KL G+ V LI S++++R+H L + + +VI DE H
Sbjct: 229 PLAIDGGSKEEIDRKLVGSMNQRGLRVPSPILIISYETFRLHAEALQKGSVGLVICDEGH 288
Query: 278 RLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDE 337
RLKN +++ Y A L T R+ ++GT +QN ++E ++L +V G LGT + F+ ++
Sbjct: 289 RLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFEL 348
Query: 338 PLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSD 397
P+ G+ A E + +ER + L++++ + L+RRT + +L + K + VV C ++
Sbjct: 349 PILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPV-KIEQVVCCRLTP 407
Query: 398 LQKRAYRRLL-QLPEIQCLINKDLPCSCGSPLTQVE 432
LQ Y+ L Q ++ L + S S +T ++
Sbjct: 408 LQAELYKNFLKQAKPVEELKEGKINVSSLSSITSLK 443
Score = 325 (119.5 bits), Expect = 3.9e-60, Sum P(2) = 3.9e-60
Identities = 68/169 (40%), Positives = 110/169 (65%)
Query: 516 GKMRALEKLM-YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GKM L+ ++ + ++ DK++L S + LD+ EK + Y + RLDG+ R +
Sbjct: 485 GKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKV 544
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
V+ FNS S + +F++S++AGG GLNL+ ANR+V+FDP+WNPA D QA R +R GQK+
Sbjct: 545 VERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 604
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYFEGVQDCKE 681
++RLLS G++EE ++ RQ +K+ LS+ V + + +R+F + + KE
Sbjct: 605 CYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFS-LGELKE 652
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 377 (137.8 bits), Expect = 4.5e-60, Sum P(2) = 4.5e-60
Identities = 97/280 (34%), Positives = 157/280 (56%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L E+Q G++++ LY N GIL D+MGLGKTIQ+I+ + T L + K
Sbjct: 470 LKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLI------------TYLYEVKK 517
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHG-PN-RDMILEKLEACGVEVLITSF 253
D G L+I P S I NW +EF +W+ + N IY G PN R + ++ +VL+T++
Sbjct: 518 DI-GPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRVGNFDVLLTTY 576
Query: 254 DSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL-KTRNRIGLTGTIMQNKIME 312
+ S+LS+ +W +I+DE HR+KN +SKL +TRNR+ LTGT +QN + E
Sbjct: 577 EYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPE 636
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERK----QHLVAVLRK 368
L+ L ++V P + + F ++++ P + T + + + +E + L VLR
Sbjct: 637 LWALLNFVLPKIFNSAKTFEDWFNTPFAN----TGTQEKLELTEEETLLIIRRLHKVLRP 692
Query: 369 YLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
+LLRR K+E L K + V+ C +S LQ++ Y+++L+
Sbjct: 693 FLLRRLKKEVEKDLP-DKVEKVIKCKLSGLQQQLYQQMLK 731
Score = 330 (121.2 bits), Expect = 4.5e-60, Sum P(2) = 4.5e-60
Identities = 68/168 (40%), Positives = 107/168 (63%)
Query: 508 GLSDV--KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGS 565
G SD+ + GK L++++ + + G ++L+F +++DI+E FL K + RLDGS
Sbjct: 781 GNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGS 840
Query: 566 TPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDR 624
T + R +++ FN+ S FL+STRAGGLGLNL +A+ V+IFD +WNP QDLQAQDR
Sbjct: 841 TKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDR 900
Query: 625 SFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
+ R GQK V + RL++ S+EE++ R + K + + +GK + +
Sbjct: 901 AHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNK 948
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 371 (135.7 bits), Expect = 5.1e-60, Sum P(2) = 5.1e-60
Identities = 102/336 (30%), Positives = 179/336 (53%)
Query: 114 EPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNK-----HGGILGDDMGLG 167
E L + KD + P+ V + R+L HQREGVKFL+ ++ HG I+ D+MGLG
Sbjct: 119 EQLKIDKD-KVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEMGLG 177
Query: 168 KTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVS 227
KT+Q I + + +S D +++K +++ PSS+++NW E +W +
Sbjct: 178 KTLQCITLMWTLLR--QSPDCK----PEIEK---AMVVSPSSLVRNWYNEVEKWLGGRIQ 228
Query: 228 --IYHGPNRDMILEKLEAC----GVEV----LITSFDSYRIHGSILSEVNWEIVIVDEAH 277
G +++ I KL G+ V LI S++++R+H L + + +VI DE H
Sbjct: 229 PLAIDGGSKEEIDRKLVGFMNQRGLRVPSPILIISYETFRLHAEALQKGSVGLVICDEGH 288
Query: 278 RLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDE 337
RLKN +++ Y A L T R+ ++GT +QN ++E ++L +V G LGT + F+ ++
Sbjct: 289 RLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFEL 348
Query: 338 PLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSD 397
P+ G+ A E + +ER + L++++ + L+RRT + +L + K + VV C ++
Sbjct: 349 PILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPV-KIEQVVCCRLTP 407
Query: 398 LQKRAYRRLL-QLPEIQCLINKDLPCSCGSPLTQVE 432
LQ Y+ L Q ++ L + S S +T ++
Sbjct: 408 LQAELYKNFLKQAKPVEELKEGKINVSSLSSITSLK 443
Score = 325 (119.5 bits), Expect = 5.1e-60, Sum P(2) = 5.1e-60
Identities = 68/169 (40%), Positives = 110/169 (65%)
Query: 516 GKMRALEKLM-YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GKM L+ ++ + ++ DK++L S + LD+ EK + Y + RLDG+ R +
Sbjct: 485 GKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKV 544
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
V+ FNS S + +F++S++AGG GLNL+ ANR+V+FDP+WNPA D QA R +R GQK+
Sbjct: 545 VERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 604
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYFEGVQDCKE 681
++RLLS G++EE ++ RQ +K+ LS+ V + + +R+F + + KE
Sbjct: 605 CYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFS-LGELKE 652
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 371 (135.7 bits), Expect = 5.5e-60, Sum P(2) = 5.5e-60
Identities = 102/336 (30%), Positives = 179/336 (53%)
Query: 114 EPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNK-----HGGILGDDMGLG 167
E L + KD + P+ V + R+L HQREGVKFL+ ++ HG I+ D+MGLG
Sbjct: 128 EQLKIDKD-KVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEMGLG 186
Query: 168 KTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVS 227
KT+Q I + + +S D +++K +++ PSS+++NW E +W +
Sbjct: 187 KTLQCITLMWTLLR--QSPDCK----PEIEK---AMVVSPSSLVRNWYNEVEKWLGGRIQ 237
Query: 228 --IYHGPNRDMILEKLEAC----GVEV----LITSFDSYRIHGSILSEVNWEIVIVDEAH 277
G +++ I KL G+ V LI S++++R+H L + + +VI DE H
Sbjct: 238 PLAIDGGSKEEIDRKLVGFMNQRGLRVPSPILIISYETFRLHAEALQKGSVGLVICDEGH 297
Query: 278 RLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDE 337
RLKN +++ Y A L T R+ ++GT +QN ++E ++L +V G LGT + F+ ++
Sbjct: 298 RLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFEL 357
Query: 338 PLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSD 397
P+ G+ A E + +ER + L++++ + L+RRT + +L + K + VV C ++
Sbjct: 358 PILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPV-KIEQVVCCRLTP 416
Query: 398 LQKRAYRRLL-QLPEIQCLINKDLPCSCGSPLTQVE 432
LQ Y+ L Q ++ L + S S +T ++
Sbjct: 417 LQAELYKNFLKQAKPVEELKEGKINVSSLSSITSLK 452
Score = 325 (119.5 bits), Expect = 5.5e-60, Sum P(2) = 5.5e-60
Identities = 68/169 (40%), Positives = 110/169 (65%)
Query: 516 GKMRALEKLM-YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GKM L+ ++ + ++ DK++L S + LD+ EK + Y + RLDG+ R +
Sbjct: 494 GKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKV 553
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
V+ FNS S + +F++S++AGG GLNL+ ANR+V+FDP+WNPA D QA R +R GQK+
Sbjct: 554 VERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 613
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYFEGVQDCKE 681
++RLLS G++EE ++ RQ +K+ LS+ V + + +R+F + + KE
Sbjct: 614 CYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFS-LGELKE 661
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 370 (135.3 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 93/301 (30%), Positives = 152/301 (50%)
Query: 124 YPIIQVPAS--INCRLLEHQREGVKFLYKLY-----KNKHGGILGDDMGLGKTIQTIAFL 176
+P++ V + L HQ+EG+ FLY+ + G IL D+MGLGKT+Q I+ +
Sbjct: 281 FPLVDVVIDPYLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLI 340
Query: 177 AAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD 235
+ + ++K LI+ P S++ NW+ EF +W + + I+
Sbjct: 341 WTLQCQGPYGGKPVIKKT--------LIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDH 392
Query: 236 MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKT 295
+ E +++ VLI S++ + + ++++I DE HRLKN K A + L
Sbjct: 393 KVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSC 452
Query: 296 RNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIA 355
RI LTGT +QN + E + L D+V PG LG+ +R+ Y+EP+ + +A E +
Sbjct: 453 EKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELG 512
Query: 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQ-C 414
+ R L + ++LRRT +E I + K +NVVFC LQ YR+LL ++ C
Sbjct: 513 ERRAAELTCLTGLFILRRT-QEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFC 571
Query: 415 L 415
L
Sbjct: 572 L 572
Score = 328 (120.5 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 89/273 (32%), Positives = 145/273 (53%)
Query: 406 LLQLPEIQCLINKDLPCS------CGSPLTQVECCKRLDNLDGCDSCPFCLV-----LPC 454
L L Q +INK LP C Q+E ++L N C L+ L C
Sbjct: 525 LFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLIC 584
Query: 455 LVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKS 514
+ L+++ NH L+ + +++ D +++ + + + F K
Sbjct: 585 IGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTE----KE 640
Query: 515 CGKMRALEKLM--YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
GK++ L KL+ +K++L S + L+IL++ R GY+++RLDG TP + RQ
Sbjct: 641 SGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQ 700
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+VD FNS S +FL+S++AGG+GLNL+ + ++++D +WNPA D+QA R +R GQK
Sbjct: 701 QIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 760
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
V ++RLL+ G++EE +Y RQ+ KQ L V
Sbjct: 761 YPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVV 793
>ZFIN|ZDB-GENE-060810-50 [details] [associations]
symbol:rad54b "RAD54 homolog B (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060810-50 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX511010
IPI:IPI00513586 Ensembl:ENSDART00000138496 Bgee:E9QHY4
Uniprot:E9QHY4
Length = 917
Score = 375 (137.1 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 100/330 (30%), Positives = 162/330 (49%)
Query: 119 SKDGEYPIIQV---PASINCRLLEHQREGVKFLYKLYKNKH-----GGILGDDMGLGKTI 170
+K G P++ V P N L HQ+EGV FLY+ G IL D+MGLGKT+
Sbjct: 289 NKSGA-PLVDVVIDPHLTN-HLRPHQKEGVVFLYECLMGMRLAGRCGAILADEMGLGKTL 346
Query: 171 QTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIY 229
Q + L + + ++K L++CP S+++NW EF++W +S+Y
Sbjct: 347 QCVCVLWTLLRQGPYGGRPVMKR--------ALVVCPGSLVKNWAAEFNKWLGRERISVY 398
Query: 230 HGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMA 289
+ + + + VL+ S++ L E+++ ++I DE HRLKN K A
Sbjct: 399 TVDQDHRVEDFVSSPLCSVLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIKTAGA 458
Query: 290 CLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPE 349
L R+ LTGT +QN + E Y++ ++V PG LGT +R+ Y+EP+ ++ + E
Sbjct: 459 LTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILRSRQPSCTE 518
Query: 350 RFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQL 409
I +ER L + + LRRT +E I + + + VFC ++LQ R YR LL
Sbjct: 519 EERCIGEERAAELFRLTGVFTLRRT-QEIINQYLSERIEWTVFCKPTELQIRLYRVLLST 577
Query: 410 PEIQCLINKDLPCSCGSPLTQVECCKRLDN 439
I+ ++ + L + K+L N
Sbjct: 578 RPIRACLSGSHTYTHSPHLVCINALKKLCN 607
Score = 322 (118.4 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 78/216 (36%), Positives = 124/216 (57%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSD 511
L C+ L+++ NH L+ +++ D+ + E+ +F P+ E G
Sbjct: 596 LVCINALKKLCNHPALLYNTLQEKADEMY-EGEVKE-LF-PE----------EYSTGAFS 642
Query: 512 VKSCGKMRALEKLMYS--WASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSN 569
GK+ L L+ + ++ D+++L S + LD+L+ + GY + RLDG TP
Sbjct: 643 TADSGKLLVLTDLLSAIQHVNRTDRVVLVSNHTQTLDLLQDVCDQIGYKWCRLDGQTPVG 702
Query: 570 LRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRF 628
RQ +VD FNS S + L+S++AGG+GLNL+ A+ +V++D +WNPA D+QA R +R
Sbjct: 703 QRQKIVDSFNSPHSSSFLLLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRD 762
Query: 629 GQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
GQK+ V ++R L+ GS+EE +Y RQV KQ LS V
Sbjct: 763 GQKKTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTVV 798
Score = 37 (18.1 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 563 DGSTPSNLRQSLVD 576
DG+TP ++++S D
Sbjct: 839 DGNTPGSVKESSED 852
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 380 (138.8 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 111/374 (29%), Positives = 196/374 (52%)
Query: 116 LVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLY-----KLYKNKHGGILGDDMGLGKT 169
L+ + + P+ V + ++L HQREGVKFL+ + +N +G I+ D+MGLGKT
Sbjct: 125 LIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKT 184
Query: 170 IQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVS-- 227
+Q I + + +S D ++DK V+++ PSS+++NW E +W V
Sbjct: 185 LQCITLIWTLL--KQSPDCK----PEIDK---VIVVSPSSLVRNWYNEVGKWLGGRVQPV 235
Query: 228 IYHGPNRDMILEKL----EACGVEV----LITSFDSYRIHGSILSEVNWEIVIVDEAHRL 279
G ++D I KL G+ + LI S++++R+H +L + +VI DE HRL
Sbjct: 236 AIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRL 295
Query: 280 KNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPL 339
KN ++ Y+A + + R+ ++GT +QN ++E ++L +V G LGT + F++ ++ P+
Sbjct: 296 KNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPI 355
Query: 340 KHGQRLTAPERFIRIADERK-QHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDL 398
G+ A ++ R A E+K Q L++++ + L+RRT + +L + K + VV C ++ L
Sbjct: 356 LKGRDADASDKD-RAAGEQKLQELISIVNRCLIRRTSDILSKYLPV-KIEQVVCCNLTPL 413
Query: 399 QKRAYRRLL-QLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVK 457
QK Y+ L Q ++ L + S S +T + K+L C+ P + CL
Sbjct: 414 QKELYKLFLKQAKPVESLQTGKISVSSLSSITSL---KKL-----CNH-PALIYEKCLTG 464
Query: 458 LQQISNHLELIKPN 471
+ L+L N
Sbjct: 465 EEGFDGALDLFPQN 478
Score = 316 (116.3 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 65/161 (40%), Positives = 104/161 (64%)
Query: 516 GKMRALEKLM-YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GKM L+ ++ + + DK++L S + LD+ EK + Y + RLDG+ R +
Sbjct: 490 GKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKI 549
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
V+ FN+ S + +F++S++AGG GLNL+ ANR+V+FDP+WNPA D QA R +R GQK+
Sbjct: 550 VERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 609
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYF 673
++RLLS G++EE + RQ +K+ LS+ V + + +R+F
Sbjct: 610 CYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHF 650
Score = 37 (18.1 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 117 VLSKDGEYPIIQVPASINCRLLEHQREGVK 146
+LSK + PI + R L +R GV+
Sbjct: 71 ILSKPFKIPIPNYTGVLGLRALGLRRAGVR 100
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 362 (132.5 bits), Expect = 5.8e-59, Sum P(2) = 5.8e-59
Identities = 90/283 (31%), Positives = 154/283 (54%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
NC L +Q EG+ +L LY+N GIL D+MGLGKT+Q+IA LA ++
Sbjct: 219 NCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIY------------- 265
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPN----RDMILEKL--EACGV 246
++D KG L+ P S + NW EF++++ V Y+G N R L+ + G
Sbjct: 266 -EMDTKGPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGT 324
Query: 247 EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIM 306
++ITS++ ++ NW+ +IVDE HRLKN +L ++ T NR+ LTGT +
Sbjct: 325 GIVITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPL 384
Query: 307 QNKIMELYNLFDWVAPGSLGTREHFREFYD-EPLKHGQRLTAPERFIRIADERKQHLVA- 364
QN + EL++L +++ P E F +++D + L G + I DE +++L++
Sbjct: 385 QNNLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISN 444
Query: 365 ---VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYR 404
+L+ +LLRR K+ + +++ K + ++ C M+ Q++ Y+
Sbjct: 445 LHTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYK 487
Score = 328 (120.5 bits), Expect = 5.8e-59, Sum P(2) = 5.8e-59
Identities = 67/158 (42%), Positives = 102/158 (64%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+K+ GK++ L+KL+ S+G K+L++S V MLD++E + ++ R+DGS + R
Sbjct: 599 LKTSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETR 658
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ ++ FNSS K +FL+STRA GLG+NLV A+ VV+FD +WNP DLQA DR R GQ
Sbjct: 659 KDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQ 718
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GK 667
+ VIV+RL ++E ++ TR K+ L + + GK
Sbjct: 719 ESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756
Score = 41 (19.5 bits), Expect = 8.1e-29, Sum P(2) = 8.1e-29
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 817 DGKESLASSKDRKNIEYSLLARFMGMDV 844
D E SSKD+ NI + L R G+ +
Sbjct: 660 DQLEKFNSSKDKHNI-FLLSTRAAGLGI 686
Score = 40 (19.1 bits), Expect = 1.0e-28, Sum P(2) = 1.0e-28
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 377 ETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDL 420
+ + L+M E N+ F + +A L E++ L N+ L
Sbjct: 787 QELSMLLMSDESNIGFENGGQKENKATEGQLTDKEVEELTNRSL 830
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 355 (130.0 bits), Expect = 5.9e-59, Sum P(2) = 5.9e-59
Identities = 105/338 (31%), Positives = 173/338 (51%)
Query: 119 SKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAA 178
+++ E I++ P +IN + +Q EG+ +LY+LY+ K GIL D+MGLGKT+QTI+ L
Sbjct: 304 NEEDEAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLC- 362
Query: 179 VFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMI 237
L+ NK KK + IICP S + NW E +W T Y+G N+D
Sbjct: 363 -----------YLRFNKNIKKKSI-IICPRSTLDNWYEEIKKWCTPMKAFKYYG-NKDQR 409
Query: 238 LE---KLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELK 294
E L +VL+T+++ S L +++W +++DEAHR+KNEKS L + L+
Sbjct: 410 KELNRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLR 469
Query: 295 TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI 354
+ NR+ +TGT + N + EL++L +++ P E F D + T + I
Sbjct: 470 SENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEF----DNLFNISKISTNDNKQSEI 525
Query: 355 ADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ--LPEI 412
+ L +L+ ++LRR K E + + K + +F MS LQK+ Y +L + +
Sbjct: 526 ITQ----LHTILKPFMLRRLKVE-VEQSLPPKREIYIFVGMSKLQKKLYSDILSKNIDVL 580
Query: 413 QCLI-NKDLPCSCGSPLTQV-ECCKRLDNLDGCDSCPF 448
+ +K+ + L Q+ +CC DG + P+
Sbjct: 581 NAMTGSKNQMLNI---LMQLRKCCNHPYLFDGIEEPPY 615
Score = 343 (125.8 bits), Expect = 5.9e-59, Sum P(2) = 5.9e-59
Identities = 67/159 (42%), Positives = 106/159 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+++ GKM L+KL+ + ++LLFS R+LDI++ + K Y + R+DGSTP + R
Sbjct: 622 IETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDER 681
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q ++ FN SK +FL+STRAGG+G+NL +A+ V++FD ++NP D+QA DR+ R GQ
Sbjct: 682 QVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQ 741
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
K+ VIV+R ++ S+EE + R K +L ++ + GKL
Sbjct: 742 KKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGKL 780
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 355 (130.0 bits), Expect = 5.9e-59, Sum P(2) = 5.9e-59
Identities = 105/338 (31%), Positives = 173/338 (51%)
Query: 119 SKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAA 178
+++ E I++ P +IN + +Q EG+ +LY+LY+ K GIL D+MGLGKT+QTI+ L
Sbjct: 304 NEEDEAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLC- 362
Query: 179 VFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMI 237
L+ NK KK + IICP S + NW E +W T Y+G N+D
Sbjct: 363 -----------YLRFNKNIKKKSI-IICPRSTLDNWYEEIKKWCTPMKAFKYYG-NKDQR 409
Query: 238 LE---KLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELK 294
E L +VL+T+++ S L +++W +++DEAHR+KNEKS L + L+
Sbjct: 410 KELNRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLR 469
Query: 295 TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI 354
+ NR+ +TGT + N + EL++L +++ P E F D + T + I
Sbjct: 470 SENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEF----DNLFNISKISTNDNKQSEI 525
Query: 355 ADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ--LPEI 412
+ L +L+ ++LRR K E + + K + +F MS LQK+ Y +L + +
Sbjct: 526 ITQ----LHTILKPFMLRRLKVE-VEQSLPPKREIYIFVGMSKLQKKLYSDILSKNIDVL 580
Query: 413 QCLI-NKDLPCSCGSPLTQV-ECCKRLDNLDGCDSCPF 448
+ +K+ + L Q+ +CC DG + P+
Sbjct: 581 NAMTGSKNQMLNI---LMQLRKCCNHPYLFDGIEEPPY 615
Score = 343 (125.8 bits), Expect = 5.9e-59, Sum P(2) = 5.9e-59
Identities = 67/159 (42%), Positives = 106/159 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+++ GKM L+KL+ + ++LLFS R+LDI++ + K Y + R+DGSTP + R
Sbjct: 622 IETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDER 681
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q ++ FN SK +FL+STRAGG+G+NL +A+ V++FD ++NP D+QA DR+ R GQ
Sbjct: 682 QVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQ 741
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
K+ VIV+R ++ S+EE + R K +L ++ + GKL
Sbjct: 742 KKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGKL 780
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 363 (132.8 bits), Expect = 6.4e-59, Sum P(3) = 6.4e-59
Identities = 69/171 (40%), Positives = 110/171 (64%)
Query: 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
CGK++ L L+ G + L+F+ +MLD+LE F+ GY++ RLDGSTP RQ+L
Sbjct: 1074 CGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTL 1133
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
+ FN++P +F++STR+GG+G+NLV A+ V+ +D +WNPA D QAQDR R GQ R V
Sbjct: 1134 MQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREV 1193
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKRYFEGVQDCKEFQG 684
++RL+S ++EE + + K+ L N+ + +G+ +F+ + + F G
Sbjct: 1194 HIYRLISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPMELFSG 1244
Score = 351 (128.6 bits), Expect = 6.4e-59, Sum P(3) = 6.4e-59
Identities = 96/320 (30%), Positives = 162/320 (50%)
Query: 128 QVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSD 187
++P + L E+Q G+ +L +Y+ K GIL D+MGLGKTI TIA LA + + D
Sbjct: 527 KLPFLLKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHL-----ACD 581
Query: 188 STILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPNRDMILEK---LEA 243
I G LI+ P+SV+ NWE EF +W F + Y G ++ L++ ++
Sbjct: 582 KGIW--------GPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKL 633
Query: 244 CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303
V IT++ + W+ +I+DEAH +KN KS+ + L ++ RI LTG
Sbjct: 634 NSFHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTG 693
Query: 304 TIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363
T +QN +MEL++L ++ P + + F++++ P+ G + E+ + +R +
Sbjct: 694 TPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIA-GM-VEGQEKINKEVIDRLHN-- 749
Query: 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCS 423
VLR +LLRR K + + + K ++V+FC +S Q+ Y + E Q +
Sbjct: 750 -VLRPFLLRRLKRD-VEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTETQATLTSGSFFG 807
Query: 424 CGSPLTQV-ECCKRLDNLDG 442
S + Q+ + C D +G
Sbjct: 808 MISIIMQLRKVCNHPDLFEG 827
Score = 39 (18.8 bits), Expect = 6.4e-59, Sum P(3) = 6.4e-59
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 451 VLPCLVKLQQISNHLELIKPNPRDEP-DKQRKDAELASAV 489
++ +++L+++ NH +L + P D D +L+S +
Sbjct: 808 MISIIMQLRKVCNHPDLFEGRPIVSSFDMAGIDVQLSSTI 847
Score = 39 (18.8 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 470 PNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFI--GLSDVKSCGKMRALE 522
P R+E ++Q D + SA +I+++ + + F GL D + +E
Sbjct: 2005 PGDREEEEEQEVDEKANSA----EIEMISCSQWYDPFFTSGLDDCSLASDISEIE 2055
Score = 38 (18.4 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 336 DEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNV 390
+E KH + E + +E + +LR+Y R ET + EDN+
Sbjct: 229 EEDEKHFTKRERQEELEALQNEVDLPVEELLRRYTSGRVSRET-SPVKDENEDNL 282
Score = 38 (18.4 bits), Expect = 5.1e-25, Sum P(3) = 5.1e-25
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 818 GKESLASSKDRKNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQDYRKRKKI 872
G +L ++ K ++ +L F+ + + + + S P R+ L+Q + KI
Sbjct: 1091 GHRALIFTQMTKMLD--VLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKI 1143
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 357 (130.7 bits), Expect = 9.2e-59, Sum P(3) = 9.2e-59
Identities = 70/159 (44%), Positives = 110/159 (69%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM AL+KL+ +G ++L+FS R+LDILE + + +G+ + RLDG+TP R
Sbjct: 441 VINSGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAR 500
Query: 572 QSLVDDFNS-SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ +D FN+ + SK +F++STRAGGLG+NL +A+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 501 EQAIDAFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQ 560
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
++ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 561 RKPVKVFRLITDNTVEERIVERAEMKLRLDSIVIQQGRL 599
Score = 339 (124.4 bits), Expect = 9.2e-59, Sum P(3) = 9.2e-59
Identities = 108/327 (33%), Positives = 161/327 (49%)
Query: 130 PASI-NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
P+ I N L ++Q G+ ++ LY+N GIL D+MGLGKT+QTIA L
Sbjct: 135 PSYIKNGTLRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTIALLG----------- 183
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD----MILEKLEA 243
LK + + G +++ P S + NW EF RW T G N+D I + +
Sbjct: 184 -YLKHYR-NIPGPHMVLVPKSTLHNWMNEFKRWVPTLKAVCLIG-NKDERAAFIRDVMMP 240
Query: 244 CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303
+V +TS++ S+ + NW +++DEAHR+KNEKSKL E KT NR+ LTG
Sbjct: 241 GEWDVCVTSYEMVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTG 300
Query: 304 TIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363
T +QN + EL++L +++ P + F ++D Q+L ER H
Sbjct: 301 TPLQNNLHELWSLLNFLLPDVFNSASDFDSWFDTNCLGDQKLV--ERL---------H-- 347
Query: 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLP 421
AVLR +LLRR K E L KE + + +S +Q+ Y R+L + +I L K
Sbjct: 348 AVLRPFLLRRIKAEVEKSLPPKKEVKI-YLGLSKMQREWYTRIL-MKDIDILNSAGKMDK 405
Query: 422 CSCGSPLTQV-ECCKRLDNLDGCDSCP 447
+ L Q+ +CC DG + P
Sbjct: 406 MRLLNILMQLRKCCNHPYLFDGAEPGP 432
Score = 43 (20.2 bits), Expect = 9.2e-59, Sum P(3) = 9.2e-59
Identities = 15/69 (21%), Positives = 29/69 (42%)
Query: 731 THIVSSKDS-------NTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQ 783
TH+ +SKDS +T+L G+K + M + L + + + N +
Sbjct: 620 THVFASKDSELTDEDIDTILERGAKKTAEMNERMQNLGESSLRNFTVDTGATETSLYNFE 679
Query: 784 PGFQRKKEE 792
R+K++
Sbjct: 680 GEDYREKQK 688
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 371 (135.7 bits), Expect = 2.0e-58, Sum P(2) = 2.0e-58
Identities = 74/159 (46%), Positives = 110/159 (69%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM AL+KL+ +G ++L+FS R+LDILE + + +GY +SRLDG TP R
Sbjct: 486 VGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEER 545
Query: 572 QSLVDDFNS-SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ +D FN+ + SK +F++STRAGGLG+NL SA+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 546 EEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQ 605
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
K+ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 606 KKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 644
Score = 317 (116.6 bits), Expect = 2.0e-58, Sum P(2) = 2.0e-58
Identities = 98/319 (30%), Positives = 163/319 (51%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 187 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 233
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRDM----ILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + V + G ++D+ I +++ +V +T
Sbjct: 234 NIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG-DKDVRAAFIRDEMMPGEWDVCVT 292
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + +W +++DEAHR+KNEKSKL E K+ NR+ LTGT +QN +
Sbjct: 293 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 352
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + + F ++D + ++ + ER L AVL+ +LL
Sbjct: 353 ELWALLNFLLPDVFNSADDFDSWFDT-----KNCLGDQKLV----ER---LHAVLKPFLL 400
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLIN--KDLPCSCGSPLT 429
RR K + L KE + + +S +Q+ Y ++L + +I L + K + L
Sbjct: 401 RRIKTDVEKSLPPKKEIKI-YLGLSKMQREWYTKIL-MKDIDVLNSSGKMDKMRLLNILM 458
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 459 QLRKCCNHPYLFDGAEPGP 477
>CGD|CAL0004359 [details] [associations]
symbol:RDH54 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0032392
"DNA geometric change" evidence=IEA] [GO:0045144 "meiotic sister
chromatid segregation" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] [GO:0030491 "heteroduplex
formation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004359 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
RefSeq:XP_717090.1 RefSeq:XP_717169.1 ProteinModelPortal:Q5A5N2
STRING:Q5A5N2 GeneID:3641231 GeneID:3641299 KEGG:cal:CaO19.12827
KEGG:cal:CaO19.5367 Uniprot:Q5A5N2
Length = 796
Score = 352 (129.0 bits), Expect = 3.4e-58, Sum P(2) = 3.4e-58
Identities = 66/146 (45%), Positives = 103/146 (70%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GK+ L L+ AS G+KI+L S + LD+LE+ L + +FSRLDGSTP+N+R LV
Sbjct: 517 GKINILVPLLLEIASLGEKIVLISNYTKTLDLLEQVLRKVSLTFSRLDGSTPNNVRSKLV 576
Query: 576 DDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635
+ FN++P VFL+S+++GG+G+NLV A+R+++FD +WNPA DLQ+ R R GQ +
Sbjct: 577 NQFNTNPDINVFLLSSKSGGMGINLVGASRLILFDNDWNPATDLQSMSRIHRDGQLKPCF 636
Query: 636 VFRLLSAGSLEELVYTRQVYKQQLSN 661
++RL + G ++E ++ RQ+ K +LS+
Sbjct: 637 IYRLFTTGCIDEKIFQRQLVKNKLSS 662
Score = 330 (121.2 bits), Expect = 3.4e-58, Sum P(2) = 3.4e-58
Identities = 106/377 (28%), Positives = 185/377 (49%)
Query: 120 KDGEYPIIQVPASINCRLLEHQREGVKFLYKL---YKN--KHGGILGDDMGLGKTIQTIA 174
K +Y + + + L HQ EGVKF+Y+ Y+ HG +L D+MGLGKT+ TI
Sbjct: 178 KAKDYVKVNIDPHLAKVLRPHQVEGVKFMYECLMGYRGFGGHGCLLADEMGLGKTLMTIT 237
Query: 175 FLAAVFGKDESSDSTILKDNKVDKKGYV----LIICPSSVIQNWEIEFSRW---STFNVS 227
+ T+LK N +KG V L++CP ++I NW EF +W + NV
Sbjct: 238 TIW-----------TLLKQNPFMEKGAVVNKVLVVCPVTLISNWRQEFRKWLGANKLNVL 286
Query: 228 IYHGP--NRDMILEKLEACGV-EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKS 284
+ P N + V +VL+ +++ H LS V +++++ DE HRLKN +
Sbjct: 287 TLNNPMSNEKQDILNFGKLNVYQVLVVNYEKLVAHFDELSAVKFDLLVCDEGHRLKNSAN 346
Query: 285 KLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQR 344
K+ ++L +I LTGT +QN+++E + L ++ PG L + F+ + P+ +
Sbjct: 347 KVLNNLIKLNIPKKIVLTGTPIQNELVEFHTLISFLNPGVLPELKLFQRNFITPISRARD 406
Query: 345 LTA--PERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRA 402
+ PE R +E Q L+ + + ++LRRT + + + + K D ++F + LQ +
Sbjct: 407 INCFDPEVKKR-GEEISQQLIELTQSFILRRT-QAILANYLTQKTDILLFVPPTSLQLKL 464
Query: 403 YRRLLQLPEIQ-----CLIN--KDLPCSCGSPLTQVECCKRLD----NLDGCDSCPFCLV 451
+ + L + +IN K + C+ S L E K++ NL G S ++
Sbjct: 465 FDYITNLKKFNQFEAFTMINLFKKI-CNSPSLLADDELFKKIVEEKFNL-GMASGKINIL 522
Query: 452 LPCLVKLQQISNHLELI 468
+P L+++ + + LI
Sbjct: 523 VPLLLEIASLGEKIVLI 539
>FB|FBgn0002989 [details] [associations]
symbol:okr "okra" species:7227 "Drosophila melanogaster"
[GO:0046843 "dorsal appendage formation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IGI;IMP;TAS] [GO:0006302 "double-strand break
repair" evidence=IMP;TAS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=TAS] [GO:0006417 "regulation of translation" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0030261 "chromosome condensation" evidence=TAS] [GO:0006281
"DNA repair" evidence=NAS] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0045003
"double-strand break repair via synthesis-dependent strand
annealing" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006417 GO:GO:0051301 GO:GO:0007067 EMBL:AE014134
GO:GO:0003677 GO:GO:0010212 GO:GO:0006338 GO:GO:0004386
GO:GO:0030261 GO:GO:0008298 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0046843 GO:GO:0007131
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG EMBL:Y10229
EMBL:AF069779 EMBL:AF069780 EMBL:AY069599 EMBL:FJ219215
EMBL:FJ219218 EMBL:FJ219219 EMBL:FJ219220 EMBL:FJ219221
EMBL:FJ219222 EMBL:FJ219223 EMBL:FJ219224 EMBL:FJ219225
EMBL:FJ219226 EMBL:FJ219227 EMBL:FJ219228 EMBL:FJ219229
EMBL:FJ219230 EMBL:FJ219231 EMBL:FJ219232 EMBL:FJ219233
EMBL:FJ219234 EMBL:FJ219235 EMBL:FJ219236 EMBL:FJ219237
EMBL:FJ219238 EMBL:FJ219239 EMBL:FJ219240 EMBL:FJ219241
EMBL:FJ219242 EMBL:FJ219243 EMBL:FJ219244 EMBL:FJ219245
EMBL:FJ219246 EMBL:FJ219247 RefSeq:NP_476661.1 UniGene:Dm.19774
ProteinModelPortal:O76460 SMR:O76460 IntAct:O76460 MINT:MINT-807919
STRING:O76460 PRIDE:O76460 EnsemblMetazoa:FBtr0077673 GeneID:33507
KEGG:dme:Dmel_CG3736 UCSC:CG3736-RA CTD:33507 FlyBase:FBgn0002989
InParanoid:O76460 PhylomeDB:O76460 GenomeRNAi:33507 NextBio:783944
Bgee:O76460 Uniprot:O76460
Length = 784
Score = 365 (133.5 bits), Expect = 6.7e-58, Sum P(2) = 6.7e-58
Identities = 89/290 (30%), Positives = 156/290 (53%)
Query: 137 LLEHQREGVKFLYKLYKNKHGG----ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
L HQREGV+F+Y+ + K G I+ D+MGLGKT+Q + + + + TI
Sbjct: 156 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTI-- 213
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIY--HGPNRDMILEKLEA------- 243
NK +++ PSS+++NWE EF++W + G ++ + LE
Sbjct: 214 -NKA------IVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSAR 266
Query: 244 CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303
G VL+ S++++RI+ IL + +VI DE HRLKN + Y A + LKT+ R+ L+G
Sbjct: 267 LGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSG 326
Query: 304 TIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363
T +QN + E Y+L ++V P LGT F+ ++ + GQ + E+ + A E+ Q L+
Sbjct: 327 TPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELI 386
Query: 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQ 413
++ + ++RRT + +L + K + V+ ++ +Q Y L+ +++
Sbjct: 387 GLVDQCIIRRTNQILTKYLPV-KFEMVICAKLTAIQLELYTNFLKSDQVR 435
Score = 313 (115.2 bits), Expect = 6.7e-58, Sum P(2) = 6.7e-58
Identities = 70/189 (37%), Positives = 114/189 (60%)
Query: 516 GKMRALEKLMYSWASKG-DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GK L+ ++ + ++G DK++L S + LD+ E+ ++ Y F RLDG+ R +
Sbjct: 499 GKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKV 558
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
VD FN S +F++S++AGG GLNL+ ANR+ +FDP+WNPA D QA R +R GQK+
Sbjct: 559 VDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 618
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKRYFEGVQDCKEFQGELFGI-CN 691
++RL+++GS+EE + RQ +K+ LS+ + + + +++F D K+ LF N
Sbjct: 619 CYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTR-DDLKD----LFTFDAN 673
Query: 692 LFRDLSDNL 700
+ D D L
Sbjct: 674 ILSDTHDKL 682
>ASPGD|ASPL0000027956 [details] [associations]
symbol:AN10677 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0006311 "meiotic gene conversion" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001305 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:LSEYFAL
EnsemblFungi:CADANIAT00003558 Uniprot:C8VG87
Length = 833
Score = 348 (127.6 bits), Expect = 9.3e-58, Sum P(2) = 9.3e-58
Identities = 99/332 (29%), Positives = 170/332 (51%)
Query: 128 QVPASINCRLLEHQR-EGVKFLYK-----LYKNKHGGILGDDMGLGKTIQTIAFLAAVFG 181
+VP I+ RL + R V+FLY+ + +N HG I+ D MGLGKT+Q I+ + +
Sbjct: 230 KVPVVIDPRLAKVLRPHQVQFLYRCTTGMIDRNAHGCIMADGMGLGKTLQCISLMWTLLK 289
Query: 182 KD-ESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW---STFNVSIYHGP-NRDM 236
+ E+ +TI K +I CPSS++ NW E +W T G ++
Sbjct: 290 QSPEAGKTTIQK---------CIIACPSSLVGNWANELGKWLGKDTITPFAVDGKASKTE 340
Query: 237 ILEKLEACGVE--------VLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYM 288
+ +L+ + VLI S+++ R++ L + +++ DE HRLKN++S +
Sbjct: 341 LTSQLKQWAISSGRSIVRPVLIVSYETLRMYVDTLKDSPIGLLLCDEGHRLKNKESLTWT 400
Query: 289 ACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAP 348
A L + R+ L+GT +QN + E + L ++ P LG++ FR+ ++ P+ G+
Sbjct: 401 ALNSLNVQRRVILSGTPIQNDLSEYFALLNFANPDLLGSQNEFRKRFEIPILKGRDAAGT 460
Query: 349 ERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
E + DER L +++ K+++RRT + +L + K ++VVFC +S Q Y+ +
Sbjct: 461 EEDRKKGDERLAELSSIVNKFIIRRTNDILSKYLPV-KYEHVVFCNLSQFQLDLYKHFID 519
Query: 409 LPEIQCLINKDLPCSCGS-PLTQVECCKRLDN 439
PEI+ L+ GS PL + K+L N
Sbjct: 520 SPEIKSLLRGK-----GSQPLKAIGILKKLCN 546
Score = 331 (121.6 bits), Expect = 9.3e-58, Sum P(2) = 9.3e-58
Identities = 71/161 (44%), Positives = 102/161 (63%)
Query: 516 GKMRALEKLMYSWASK-GDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GKM L++++ DKI+L S + LD+ EK + Y RLDG+ RQ L
Sbjct: 586 GKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRAYGCLRLDGTMNVKKRQKL 645
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
VD FN ++ VFL+S++AGG GLNL+ ANR+V+FDP+WNPA D QA R +R GQK+
Sbjct: 646 VDKFNDPDGEEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPAADQQALARVWRDGQKKD 705
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKRYF 673
V+R ++ GS+EE ++ RQ +KQ LS+ V S + +R+F
Sbjct: 706 CFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERHF 746
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 348 (127.6 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 99/318 (31%), Positives = 156/318 (49%)
Query: 112 PFEP--LVLSKDGEYP----IIQVPAS--INCRLLEHQREGVKFLYKLYK-----NKHGG 158
P +P L++ + G P I+ V + L HQREGVKFLY+ N G
Sbjct: 262 PKQPGALIMKRPGSAPKGKRIVDVVVDPILAKHLRPHQREGVKFLYECVMGMRSFNGEGA 321
Query: 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEF 218
IL DDMGLGKT+QTI L + + I + V KK LI+CP ++I NW EF
Sbjct: 322 ILADDMGLGKTLQTITLLWTLL-----KQNPIYEAAPVIKKA--LIVCPVTLINNWRREF 374
Query: 219 SRW-STFNVSIY-HGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNW-EIVIVDE 275
+W + ++ R + + ++I ++ R L+ N +IVI DE
Sbjct: 375 RKWLGNERIGVFVFDDKRKRLTDFTMGKAYSIMIVGYEKLRSVQEGLARGNGVDIVIADE 434
Query: 276 AHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFY 335
HRLK ++K A L RI L+GT +QN + E + D V PG LG+ + F + +
Sbjct: 435 GHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVNPGVLGSFKSFIKEF 494
Query: 336 DEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTM 395
+ P+ ++ A E+ I + R + L + +++LRRT + + + K + V+FC
Sbjct: 495 EGPIVRSRQPEATEKDIEKGEARNEELRELTSQFMLRRTAD-ILADYLPPKTEYVLFCKP 553
Query: 396 SDLQKRAYRRLLQLPEIQ 413
++ Q + Y+ +L P Q
Sbjct: 554 TNTQAKIYQNVLASPVFQ 571
Score = 334 (122.6 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 73/158 (46%), Positives = 100/158 (63%)
Query: 514 SCG-KMRALEKLM-YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
SC K+R L++L+ Y S +K++L S LD+L L F RLDGSTP+ R
Sbjct: 628 SCSAKIRVLDQLLHYLRTSTSEKVVLVSNYTSTLDLLANLLSSLSLPFLRLDGSTPAQKR 687
Query: 572 QSLVDDFNSSPSKQ--VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFG 629
QSLV+DFN P+ FL+S +AGG GLNL+ A+R+V+FD +WNPA D+QA R R G
Sbjct: 688 QSLVEDFNRHPASTCFAFLLSAKAGGTGLNLIGASRLVLFDVDWNPATDIQAMARIHRDG 747
Query: 630 QKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK 667
QK H ++R+L GSLEE ++ RQV K L++ + K
Sbjct: 748 QKHHCHIYRILLQGSLEEKIWQRQVTKIGLADSVMEHK 785
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 348 (127.6 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 93/277 (33%), Positives = 153/277 (55%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L ++Q +G+ +L L++NK GIL D+MGLGKT+QTI+FL + +K +
Sbjct: 183 KLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYL---------RYVK--Q 231
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPN---RDMILEKLEACGVEVLIT 251
++ G LII P S + NW EF +W+ NV + HG D++ + +VLIT
Sbjct: 232 IE--GPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLIT 289
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ + L + W+ +++DEAHR+KNE+S L ++NR+ +TGT +QN +
Sbjct: 290 SYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLH 349
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P G E F E+++ Q + ++ I I Q L +VL +LL
Sbjct: 350 ELWALLNFLLPDIFGDSELFDEWFE------QNNSEQDQEIVI-----QQLHSVLNPFLL 398
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
RR K + L+ E NV + M+D+Q + Y+ LL+
Sbjct: 399 RRVKADVEKSLLPKIETNV-YVGMTDMQIQWYKSLLE 434
Score = 335 (123.0 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 65/150 (43%), Positives = 99/150 (66%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GKM L+KL+ KG ++L+FS R+LDILE + + + + R+DGST R +
Sbjct: 490 GKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAI 549
Query: 576 DDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
D++N S++ VFL++TRAGGLG+NLV+A+ V++FD +WNP DLQA DR+ R GQK+ V
Sbjct: 550 DEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQV 609
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
V+R ++ ++EE V R K +L + +
Sbjct: 610 HVYRFVTENAIEEKVIERAAQKLRLDQLVI 639
Score = 49 (22.3 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 18/79 (22%), Positives = 32/79 (40%)
Query: 325 LGTREHFREFYDEPLKHGQRLTAPERFIRIADE-----RKQHLVAVLRKYLLRRTKEETI 379
LG + FR F KH + + ++ ++ D K H R+T++E
Sbjct: 95 LGVTDLFRHFIGIKAKHDKNI---QKLLKQLDSDANKLSKSHSTVSSSSRHHRKTEKEED 151
Query: 380 GHLMMGKEDNVVFCTMSDL 398
LM +E+ +V D+
Sbjct: 152 AELMADEEEEIVDTYQEDI 170
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 355 (130.0 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
Identities = 95/282 (33%), Positives = 149/282 (52%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L +Q EG++++ LY N + GIL D+MGLGKTIQTIA +A L ++K
Sbjct: 386 LRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIA------------YLLESK- 432
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPN--RDMILEKLEACGVEVLITSF 253
D G LI+ P +V+ NWE EF+ W+ + + +Y G R I ++ VLIT +
Sbjct: 433 DLHGPHLILAPKAVLPNWENEFALWAPSISAFLYDGSKEKRTEIRARIAGGKFNVLITHY 492
Query: 254 DSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQNKIME 312
D + L +++W +IVDE HRLKN + L + + R+ LTGT +QN + E
Sbjct: 493 DLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQE 552
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKH-GQR-LTAPERFIRIADERKQHLVAVLRKYL 370
L++L +++ P + +F E+++ P G LT E + I R H V+R +L
Sbjct: 553 LWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLII--NRLHH---VIRPFL 607
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEI 412
LRR K E + + GK ++ C MS QK Y+++ + +
Sbjct: 608 LRRKKSE-VEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRV 648
Score = 332 (121.9 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
Identities = 76/188 (40%), Positives = 110/188 (58%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V++ GK L++L+ G +ILLFS R++D+LE +L Y + RLDGST ++ R
Sbjct: 691 VRASGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQR 750
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
L+ FN S +FL+STRAGGLGLNL +A+ ++IFD +WNP D QA+DR+ R GQ
Sbjct: 751 GILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQ 810
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELF--G 688
K+ V VF L+S GS+EE++ R K + + L QD +E E+ G
Sbjct: 811 KKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQAGLFNTT-STAQDRREMLEEIMSKG 869
Query: 689 ICNLFRDL 696
+L D+
Sbjct: 870 TSSLGEDV 877
Score = 42 (19.8 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
Identities = 18/78 (23%), Positives = 36/78 (46%)
Query: 734 VSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEES 793
+ S+D + S S+ RK +D + ++ E V + +++ K+ + +KEES
Sbjct: 967 MESEDEDA--SKVSQKRKRTDTKTRMSNGSKAE---AVLSESDEE---KEEEEEERKEES 1018
Query: 794 IPQDLSSRPPPIHSKRRN 811
+ P+HS + N
Sbjct: 1019 GKESEEENEKPLHSWKTN 1036
Score = 38 (18.4 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 349 ERFIRIADERKQHLVAVLRKY 369
ER +R+ +E K + RK+
Sbjct: 196 ERLLRLEEEEKNLIETTQRKF 216
>UNIPROTKB|B4KHL5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7230 "Drosophila mojavensis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH933807 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002002852.1 EnsemblMetazoa:FBtr0161485
GeneID:6576868 KEGG:dmo:Dmoj_GI10760 FlyBase:FBgn0133523
InParanoid:B4KHL5 Uniprot:B4KHL5
Length = 783
Score = 370 (135.3 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 103/362 (28%), Positives = 182/362 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGG----ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
L HQREGV+F+Y+ + K G I+ D+MGLGKT+Q + + + TI K
Sbjct: 149 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTISK 208
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRW--STFNVSIYHGPNRDMILEKLEA------- 243
+I+ PSS+++NWE EF++W + G +++ LE
Sbjct: 209 ---------AIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRALEQFAMNTAT 259
Query: 244 -CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
CG VL+ S++++R++ IL + +VI DE HRLKN + Y A + LKT+ R+ L+
Sbjct: 260 RCGTPVLLISYETFRLYAHILCKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLS 319
Query: 303 GTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362
GT +QN + E ++L ++V P LGT F+ ++ + GQ + + + A ++ Q L
Sbjct: 320 GTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTDAERQRALQKTQEL 379
Query: 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPC 422
+ ++ + ++RRT + +L + K + VV ++ +Q + Y L+ +++ + D C
Sbjct: 380 IGLVNQCIIRRTNQILTKYLPV-KFEMVVCVKLTPVQLQIYTNFLKSDQVRRSL-AD--C 435
Query: 423 SCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPN--PRD-EPDKQ 479
+ + LT + L L C+ P + K + N ++ PN P+D P+
Sbjct: 436 NEKASLTALADITTLKKL--CNH-PDLIYEKIAAKEKGFENSQNVLPPNYKPKDVNPELS 492
Query: 480 RK 481
K
Sbjct: 493 GK 494
Score = 305 (112.4 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 65/177 (36%), Positives = 111/177 (62%)
Query: 516 GKMRALEKLMYSW-ASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GK L+ ++ + A+ DK++L S + LD+ E+ ++ Y++ RLDG+ R +
Sbjct: 493 GKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYTYVRLDGTMTIKKRSKV 552
Query: 575 VDDFNSSPSKQVFL--ISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
VD FN PS FL +S++AGG GLNL+ ANR+ +FDP+WNPA D QA R +R GQK+
Sbjct: 553 VDRFND-PSTDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKK 611
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKRYF--EGVQDCKEFQGEL 686
++RL+++GS+EE + RQ +K+ LS+ + + + +++F + ++D F+ +
Sbjct: 612 PCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESSEKHFTRDDLKDLFSFEANV 668
Score = 39 (18.8 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 474 DEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIG 508
DE ++Q++ + S D D N+ E F+G
Sbjct: 748 DESEQQQQSPKRTSKNDDNDEDFDPENSAEEQFLG 782
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 365 (133.5 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 71/159 (44%), Positives = 108/159 (67%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+ + GKM L+KL+ +G ++LLFS R+LDILE + + +GY + RLDG TP R
Sbjct: 406 ITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 465
Query: 572 QSLVDDFNS-SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ +D FN+ + SK +F++STRAGGLG+NL +A+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 466 EEAIDTFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQ 525
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
K+ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 526 KKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 564
Score = 323 (118.8 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 101/318 (31%), Positives = 158/318 (49%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ ++ LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 107 LRDYQVRGLNWMISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 153
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW--STFNVSIYHGPN-RDMILEKLEACGV-EVLITS 252
+ G +++ P S + NW EF RW S V + + R + + G +V +TS
Sbjct: 154 NIPGPHMVLVPKSTLHNWMNEFKRWVPSLRAVCLIGDKDARAAFIRDVMMPGEWDVCVTS 213
Query: 253 FDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIME 312
++ S+ + NW +++DEAHR+KNEKSKL E KT NR+ LTGT +QN + E
Sbjct: 214 YEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHE 273
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLR 372
L+ L +++ P + + F ++D + ++ + ER L AVL+ +LLR
Sbjct: 274 LWALLNFLLPDVFNSADDFDSWFDT-----KNCLGDQKLV----ER---LHAVLKPFLLR 321
Query: 373 RTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPLTQ 430
R K E L KE + + +S +Q+ Y R+L + +I L K + L Q
Sbjct: 322 RIKAEVEKSLPPKKEVKI-YLGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNILMQ 379
Query: 431 V-ECCKRLDNLDGCDSCP 447
+ +CC DG + P
Sbjct: 380 LRKCCNHPYLFDGAEPGP 397
Score = 37 (18.1 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 15/65 (23%), Positives = 26/65 (40%)
Query: 731 THIVSSKDSN-------TLLSTGSKTRKSSDPEMARTSKPLLEDMGI-----VYAHRNDD 778
TH+ +SKDS T+L G K + + + + L + + +Y +D
Sbjct: 586 THVFASKDSELTEEDITTILERGEKKTAEMNERLQKMGESSLRNFTMDTEMSLYNFEGED 645
Query: 779 IVNKQ 783
KQ
Sbjct: 646 YREKQ 650
>UNIPROTKB|B4M9A8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7244 "Drosophila virilis" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH940654
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002057711.1 STRING:B4M9A8 EnsemblMetazoa:FBtr0234205
GeneID:6634100 KEGG:dvi:Dvir_GJ18280 FlyBase:FBgn0205441
InParanoid:B4M9A8 Uniprot:B4M9A8
Length = 786
Score = 370 (135.3 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 103/362 (28%), Positives = 181/362 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGG----ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
L HQREGV+F+Y+ + K G I+ D+MGLGKT+Q + + + TI K
Sbjct: 149 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTISK 208
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRW--STFNVSIYHGPNRDMILEKLEA------- 243
+++ PSS+++NWE EF++W + G +++ LE
Sbjct: 209 ---------AIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRTLEQFAMNTAT 259
Query: 244 -CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
CG VL+ S++++R++ IL + +VI DE HRLKN + Y A + LKT+ R+ L+
Sbjct: 260 RCGTPVLLISYETFRLYSHILCKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLS 319
Query: 303 GTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362
GT +QN + E ++L ++V P LGT F+ ++ + GQ + + A E+ Q L
Sbjct: 320 GTPIQNDLTEYFSLVNFVNPEMLGTGSDFKRNFENAILRGQNADSTDAERERALEKTQEL 379
Query: 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPC 422
V ++ + ++RRT + +L + K + VV ++ +Q + Y L+ +++ + D C
Sbjct: 380 VGLVNQCIIRRTNQILTKYLPV-KFEMVVCAKLTAVQLQLYTNFLKSDQVRRSL-AD--C 435
Query: 423 SCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPN--PRD-EPDKQ 479
+ + LT + L L C+ P + + + N ++ PN P+D P+
Sbjct: 436 TDKTTLTALADITTLKKL--CNH-PDLIYEKIAAREKGFENSQNVLPPNYKPKDVNPELS 492
Query: 480 RK 481
K
Sbjct: 493 GK 494
Score = 303 (111.7 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 66/177 (37%), Positives = 108/177 (61%)
Query: 516 GKMRALEKLMYSW-ASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GK L+ ++ + A+ DK++L S + LD+ E+ ++ YS+ RLDG+ R +
Sbjct: 493 GKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKV 552
Query: 575 VDDFNSSPSKQVFL--ISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
VD FN P+ FL +S++AGG GLNL+ ANR+ +FDP+WNPA D QA R +R GQK+
Sbjct: 553 VDRFND-PATDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKK 611
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK--LEKRYF-EGVQDCKEFQGEL 686
++RL+++GS+EE + RQ +K+ LS+ + EK + + ++D F+ +
Sbjct: 612 PCYIYRLVASGSIEEKILQRQTHKKSLSSSIIDNNDSAEKHFTRDDLKDLFRFEANV 668
Score = 45 (20.9 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 789 KKEESIPQDLSSRPPPIHSKRR--NLLDCADGKESLASSKDRK 829
K+ I +D S P ++SKR ++L+ D ++ +S D K
Sbjct: 740 KQPTCITEDNHSEQPQLNSKRNANSVLENDDDEDFDPNSSDEK 782
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 357 (130.7 bits), Expect = 1.9e-57, Sum P(2) = 1.9e-57
Identities = 70/159 (44%), Positives = 107/159 (67%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + +GY + RLDG TP R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 572 QSLVDDFN-SSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ ++ FN + S+ +F++STRAGGLG+NL SA+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 545 EEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQ 604
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
K+ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 605 KKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 643
Score = 317 (116.6 bits), Expect = 1.9e-57, Sum P(2) = 1.9e-57
Identities = 98/319 (30%), Positives = 161/319 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 232
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD----MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + V + G ++D I +++ +V +T
Sbjct: 233 NIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG-DKDARAAFIRDEMMPGEWDVCVT 291
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + +W +++DEAHR+KNEKSKL E K+ NR+ LTGT +QN +
Sbjct: 292 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 351
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + + F ++D + ++ + ER L AVL+ +LL
Sbjct: 352 ELWALLNFLLPDVFNSADDFDSWFDT-----KNCLGDQKLV----ER---LHAVLKPFLL 399
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPLT 429
RR K + L KE + + +S +Q+ Y ++L + +I L K + L
Sbjct: 400 RRIKTDVEKSLPPKKEIKI-YLGLSKMQREWYTKIL-MKDIDVLNSAGKMDKMRLLNILM 457
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 458 QLRKCCNHPYLFDGAEPGP 476
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 350 (128.3 bits), Expect = 2.3e-57, Sum P(2) = 2.3e-57
Identities = 96/283 (33%), Positives = 151/283 (53%)
Query: 130 PASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDST 189
PA I + ++Q G+ +L L++N GIL D+MGLGKT+QTI+FL
Sbjct: 179 PAFIQGTMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQTISFLG------------ 226
Query: 190 ILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRD---MILEKLEACG 245
L+ + + G L+I P S + NW+ EF +W+ NV + G + +I E+L
Sbjct: 227 YLR-HIMGITGPHLVIVPKSTLDNWKREFGKWTPEVNVLVLQGAKEERAALIAERLVDES 285
Query: 246 VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTI 305
+V ITS++ S L + WE +I+DEAHR+KNE+S L +RNR+ +TGT
Sbjct: 286 FDVCITSYEMILREKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTP 345
Query: 306 MQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365
+QN I EL+ L +++ P G E F +++ GQ +D Q L V
Sbjct: 346 LQNNIHELWALLNFLLPDVFGDSEAFDQWFSG---EGQD----------SDTVVQQLHRV 392
Query: 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
LR +LLRR K + L+ KE N+ + M+++Q+ Y+++L+
Sbjct: 393 LRPFLLRRVKADVEKSLLPKKEVNL-YLKMTEMQRTWYQKILE 434
Score = 330 (121.2 bits), Expect = 2.3e-57, Sum P(2) = 2.3e-57
Identities = 65/154 (42%), Positives = 100/154 (64%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ ++G ++L+FS R+LDILE + + + Y +SR+DG T R
Sbjct: 486 VYNSGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDR 545
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ +D++N S++ VFL++TRAGGLG+NL +A+ V++FD +WNP DLQA DR+ R GQ
Sbjct: 546 IAAIDEYNKPGSEKFVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQ 605
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
+ V V+R L ++EE V R K L + +
Sbjct: 606 TKQVYVYRFLVDNTIEEKVLERAAQKLHLDRLVI 639
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 364 (133.2 bits), Expect = 2.8e-57, Sum P(2) = 2.8e-57
Identities = 89/291 (30%), Positives = 158/291 (54%)
Query: 137 LLEHQREGVKFLYKLYKNKHGG----ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
L HQREGV+F+Y+ + K G I+ D+MGLGKT+Q +A + + + TI
Sbjct: 152 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECKPTI-- 209
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRW--STFNVSIYHGPNRDMILEKLEA------- 243
NK +I+ PSS+++NWE EF++W + G +++ + LE
Sbjct: 210 -NKC------IIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQFSMNAST 262
Query: 244 -CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
G VL+ S++++RI+ IL + +VI DE HRLKN + Y A + LKT+ R+ L+
Sbjct: 263 RLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLS 322
Query: 303 GTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362
GT +QN + E ++L ++V P LGT F+ ++ + GQ + ++ A E+ Q L
Sbjct: 323 GTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALEKTQEL 382
Query: 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQ 413
+ ++ + ++RRT + +L + K + V+ ++ +Q + Y L+ +++
Sbjct: 383 IKLVDQCIIRRTNQILTKYLPV-KFEMVICAKLTPIQLQLYTNFLKSDQVR 432
Score = 308 (113.5 bits), Expect = 2.8e-57, Sum P(2) = 2.8e-57
Identities = 65/176 (36%), Positives = 108/176 (61%)
Query: 516 GKMRALEKLMYSWASKG-DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GK + L+ ++ + + G DK++L S + LD+ E+ ++ Y F RLDG+ R +
Sbjct: 497 GKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKV 556
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
VD FN S +F++S++AGG GLNL+ ANR+ +FDP+WNPA D QA R +R GQK+
Sbjct: 557 VDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 616
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK--LEKRYF-EGVQDCKEFQGEL 686
++RL+++GS+EE + RQ +K+ LS+ + EK + + ++D F ++
Sbjct: 617 CYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFSFDPDI 672
Score = 43 (20.2 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 737 KDSNTLLSTGSKTRKSSDPEMARTSKPLLEDM-GIVYAHRNDDIV 780
++S +L + +PE++ K LL+ M + AH ND +V
Sbjct: 475 ENSQNILPINYNPKGEINPELSGKFK-LLDFMLAAIRAHGNDKVV 518
>UNIPROTKB|B4NXB8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7245 "Drosophila yakuba" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CM000157
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872
EMBL:FJ219212 RefSeq:XP_002087763.1 STRING:B4NXB8 GeneID:6526655
KEGG:dya:Dyak_GE14966 FlyBase:FBgn0232556 Uniprot:B4NXB8
Length = 784
Score = 365 (133.5 bits), Expect = 2.8e-57, Sum P(2) = 2.8e-57
Identities = 89/290 (30%), Positives = 155/290 (53%)
Query: 137 LLEHQREGVKFLYKLYKNKHGG----ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
L HQREGV+F+Y+ + K G I+ D+MGLGKT+Q + + + + TI
Sbjct: 156 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTI-- 213
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIY--HGPNRDMILEKLEA------- 243
NK +++ PSS+++NWE EF++W + G ++ + LE
Sbjct: 214 -NKA------IVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSR 266
Query: 244 CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303
G VL+ S++++RI+ IL + +VI DE HRLKN + Y A + LKT+ R+ L+G
Sbjct: 267 LGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSG 326
Query: 304 TIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363
T +QN + E Y+L ++V P LGT F+ ++ + GQ + E + A E+ Q L+
Sbjct: 327 TPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEGERQRAIEKTQELI 386
Query: 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQ 413
++ + ++RRT + +L + K + V+ ++ +Q Y L+ +++
Sbjct: 387 GLVDQCIIRRTNQILTKYLPV-KFEMVICAKLTSIQLELYTNFLKSDQVR 435
Score = 307 (113.1 bits), Expect = 2.8e-57, Sum P(2) = 2.8e-57
Identities = 64/176 (36%), Positives = 107/176 (60%)
Query: 516 GKMRALEKLMYSWASKG-DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GK L+ ++ + + G DK++L S + LD+ E+ ++ Y F RLDG+ R +
Sbjct: 499 GKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKV 558
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
VD FN S +F++S++AGG GLNL+ ANR+ +FDP+WNPA D QA R +R GQK+
Sbjct: 559 VDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 618
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK--LEKRYF-EGVQDCKEFQGEL 686
++R++++GS+EE + RQ +K+ LS+ + EK + + ++D F ++
Sbjct: 619 CYIYRMVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFTFDADI 674
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 357 (130.7 bits), Expect = 2.9e-57, Sum P(3) = 2.9e-57
Identities = 98/279 (35%), Positives = 152/279 (54%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L +Q +G++++ L+ N GIL D+MGLGKTIQTIAF+ T L + K
Sbjct: 365 KLKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFI------------TYLMEIK 412
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI--YHGPNRDM-ILEKLEACG-VEVLIT 251
G L+I P S + NW+ EF +W+ NV + Y GP + E + G VL+T
Sbjct: 413 -KTSGPFLVIVPLSTVPNWQNEFDKWAA-NVHLIAYKGPKETRKVFEPIIKSGKFNVLLT 470
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLY-MACLELKTRNRIGLTGTIMQNKI 310
+F+ ++L ++ W+ +I+DE HRLKN+ KL M + + R+ +TGT +QNK+
Sbjct: 471 TFEYVIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKL 530
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQR--LTAPERFIRIADERKQHLVAVLR 367
EL+ L +++ P + F ++++ P G++ LT E + I R+ H VLR
Sbjct: 531 PELWALLNFLLPSIFSSCSTFEQWFNAPFATTGEKVELTQEETMLII---RRLH--KVLR 585
Query: 368 KYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
+LLRR K+E L K + VV C MS LQK Y+ +
Sbjct: 586 PFLLRRLKKEVESELP-DKMEFVVRCDMSALQKVLYKHM 623
Score = 330 (121.2 bits), Expect = 2.9e-57, Sum P(3) = 2.9e-57
Identities = 72/175 (41%), Positives = 108/175 (61%)
Query: 500 NAQNESFIGLSDV-KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYS 558
N + FI D+ + GK+ L +++ + G ++L+F M+ I+E FL
Sbjct: 666 NFWDARFISAVDLYRVSGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLAGGTIQ 725
Query: 559 FSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQ 617
+ RLDGST + R +L+D FN+ S+ +F++STRAGGLGLNL +A+ V+IFD +WNP Q
Sbjct: 726 YLRLDGSTKPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQ 785
Query: 618 DLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
D+QAQDR+ R GQK V VFRL++A S+EE + YK + + +GK + R
Sbjct: 786 DMQAQDRAHRIGQKAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQAGKFDNR 840
Score = 43 (20.2 bits), Expect = 2.9e-57, Sum P(3) = 2.9e-57
Identities = 19/98 (19%), Positives = 43/98 (43%)
Query: 744 STGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPG----FQRKKEESIPQDLS 799
STG++ R+ + + +T ED + +DI+++ FQ+ +E + +
Sbjct: 841 STGAERREILE-NIIKTENESEEDEEVPNDEDINDILSRSEEEFELFQKMDQERFENEQA 899
Query: 800 SRPPP--IHSKR--RNLLDCADGKESLASSKDRKNIEY 833
+ P + R++L AD + + +K+ + Y
Sbjct: 900 QKAKPRLVGEDEIPRDILRAADETDYIEKAKEEGRVPY 937
Score = 42 (19.8 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 278 RLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDW---VAPGSLGTREHFREF 334
+L E + Y A L+ K R+ + I L +L GSL T+ + R+
Sbjct: 245 KLIQEDEEGYRAMLDEKKDQRLVYLLEQTDDYIKSLCDLLKQQQNATAGSLATKSYIRKE 304
Query: 335 YD 336
YD
Sbjct: 305 YD 306
Score = 37 (18.1 bits), Expect = 9.2e-27, Sum P(3) = 9.2e-27
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 518 MRALEKLMYSWASKG 532
M AL+K++Y KG
Sbjct: 612 MSALQKVLYKHMQKG 626
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 367 (134.2 bits), Expect = 3.5e-57, Sum P(2) = 3.5e-57
Identities = 104/362 (28%), Positives = 184/362 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGG----ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
L HQREGV+F+Y + K G I+ D+MGLGKT+Q + + + + TI K
Sbjct: 153 LRPHQREGVRFMYDCVEGKKGNFNGCIMADEMGLGKTLQCVTLVWTLLRQSCECKPTITK 212
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRW--STFNVSIYHGPNRDMILEKLEA------- 243
+I+ PSS+++NWE EF++W + G +++ ++ LE
Sbjct: 213 ---------AIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTIKALEQFSMNTST 263
Query: 244 -CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
G VL+ S++++RI+ +IL + +VI DE HRLKN + Y A + LKT+ R+ L+
Sbjct: 264 RLGTPVLLISYETFRIYANILCQNEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLS 323
Query: 303 GTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362
GT +QN + E ++L ++V P LGT F+ ++ P+ GQ + ++ A E+ Q L
Sbjct: 324 GTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDKERERALEKTQEL 383
Query: 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPC 422
+ ++ + ++RRT + +L + K + V+ ++ +Q Y L+ +++ + D C
Sbjct: 384 IGLVNQCIIRRTNQILTKYLPV-KFEMVICVRLTSVQLEFYTNFLKSDKVRRSL-AD--C 439
Query: 423 SCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPN--PRD-EPDKQ 479
+ + LT + L L C S P + L + + N ++ N P+D P+
Sbjct: 440 NEKASLTALADITTLKKL--C-SHPDLIYEKMLARDKGFENSQNILPTNYKPKDLNPELS 496
Query: 480 RK 481
K
Sbjct: 497 GK 498
Score = 304 (112.1 bits), Expect = 3.5e-57, Sum P(2) = 3.5e-57
Identities = 66/177 (37%), Positives = 107/177 (60%)
Query: 516 GKMRALEKLMYSW-ASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GK L+ ++ + A+ DK++L S + LD+ E+ ++ Y+F RLDG+ R +
Sbjct: 497 GKFMLLDFMLATIRANSDDKVVLISNYTQTLDLFEQLARKRKYTFVRLDGTMTIKKRSKV 556
Query: 575 VDDFNSSPSKQVFL--ISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
VD FN P FL +S++AGG GLNL+ ANR+ +FDP+WNPA D QA R +R GQK+
Sbjct: 557 VDRFND-PENDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKK 615
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK--LEKRYF-EGVQDCKEFQGEL 686
++RL+++GS+EE + RQ +K+ LS+ + EK + + ++D F ++
Sbjct: 616 PCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFSFDSKI 672
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 364 (133.2 bits), Expect = 3.9e-57, Sum P(2) = 3.9e-57
Identities = 90/290 (31%), Positives = 158/290 (54%)
Query: 137 LLEHQREGVKFLYKLYKNKHGG----ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
L HQREGV+F+Y+ + K G I+ D+MGLGKT+Q + + + + S TI
Sbjct: 159 LRPHQREGVRFMYECVEGKKGDFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESKPTI-- 216
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRW---STFNVSIYHGPNRDMI--LEKLEAC--- 244
NK +++ PSS+++NWE EF++W +++ G + I LE+
Sbjct: 217 -NKA------IVVSPSSLVKNWEKEFTKWLQGRLLCLAMEGGTKENTIRVLEQFSMTSSK 269
Query: 245 -GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303
G VL+ S++++RI+ IL + +VI DE HRLKN + Y A + LKT+ R+ L+G
Sbjct: 270 LGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSG 329
Query: 304 TIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363
T +QN + E ++L ++V P LGT F+ ++ + GQ + E + A E+ Q L+
Sbjct: 330 TPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTEGERKKAIEKTQELI 389
Query: 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQ 413
++ + ++RRT + +L + K + V+ ++ +Q + Y L +++
Sbjct: 390 GLVDQCIIRRTNQILTKYLPI-KFEMVICVKLTAIQLQLYTNFLNSDQVR 438
Score = 307 (113.1 bits), Expect = 3.9e-57, Sum P(2) = 3.9e-57
Identities = 71/228 (31%), Positives = 127/228 (55%)
Query: 516 GKMRALEKLMYSWASKG-DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GK L+ ++ + + G DK++L S + LD+ E+ ++ Y F RLDG+ R +
Sbjct: 502 GKFMLLDFMLAAIRAAGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKV 561
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
VD FN S+ +F++S++AGG GLNL+ ANR+ +FDP+WNPA D QA R +R GQK+
Sbjct: 562 VDKFNDPDSECFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 621
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKRYF--EGVQDCKEFQGELFGIC 690
++RL+++G++EE + RQ +K+ LS+ + + + +++F + ++D F ++
Sbjct: 622 CYIYRLVASGTIEEKILQRQTHKKSLSSTIIDNNESSEKHFTRDDLKDLFSFDQKILSDT 681
Query: 691 N---LFRDLSDNLFTXXXXXXXXXXXXXXXRHHCTNQGFKGLETHIVS 735
+ + N+ T +HC+N +GL I++
Sbjct: 682 HEKLKCKRCVQNIQTKPPSESTDCTSHLSQWYHCSNN--RGLPDSILA 727
>UNIPROTKB|B4GS98 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7234 "Drosophila persimilis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043150 EMBL:CH479189 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002021802.1 EnsemblMetazoa:FBtr0192316
GeneID:6596280 KEGG:dpe:Dper_GL26701 FlyBase:FBgn0164282
Uniprot:B4GS98
Length = 782
Score = 364 (133.2 bits), Expect = 5.9e-57, Sum P(2) = 5.9e-57
Identities = 89/291 (30%), Positives = 158/291 (54%)
Query: 137 LLEHQREGVKFLYKLYKNKHGG----ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
L HQREGV+F+Y+ + K G I+ D+MGLGKT+Q +A + + + TI
Sbjct: 152 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECKPTI-- 209
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRW--STFNVSIYHGPNRDMILEKLEA------- 243
NK +I+ PSS+++NWE EF++W + G +++ + LE
Sbjct: 210 -NKC------IIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQFSMNAST 262
Query: 244 -CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
G VL+ S++++RI+ IL + +VI DE HRLKN + Y A + LKT+ R+ L+
Sbjct: 263 RLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLS 322
Query: 303 GTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362
GT +QN + E ++L ++V P LGT F+ ++ + GQ + ++ A E+ Q L
Sbjct: 323 GTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALEKTQEL 382
Query: 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQ 413
+ ++ + ++RRT + +L + K + V+ ++ +Q + Y L+ +++
Sbjct: 383 IKLVDQCIIRRTNQILTKYLPV-KFEMVICAKLTPIQLQLYTNFLKSDQVR 432
Score = 305 (112.4 bits), Expect = 5.9e-57, Sum P(2) = 5.9e-57
Identities = 65/176 (36%), Positives = 107/176 (60%)
Query: 516 GKMRALEKLMYSWASKG-DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GK + L+ ++ + + G DK++L S + LD+ E ++ Y F RLDG+ R +
Sbjct: 497 GKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFELLARKRKYGFVRLDGTMSIKKRSKV 556
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
VD FN S +F++S++AGG GLNL+ ANR+ +FDP+WNPA D QA R +R GQK+
Sbjct: 557 VDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 616
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK--LEKRYF-EGVQDCKEFQGEL 686
++RL+++GS+EE + RQ +K+ LS+ + EK + + ++D F ++
Sbjct: 617 CYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFSFDPDI 672
Score = 43 (20.2 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 737 KDSNTLLSTGSKTRKSSDPEMARTSKPLLEDM-GIVYAHRNDDIV 780
++S +L + +PE++ K LL+ M + AH ND +V
Sbjct: 475 ENSQNILPINYNPKGEINPELSGKFK-LLDFMLAAIRAHGNDKVV 518
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 357 (130.7 bits), Expect = 7.4e-57, Sum P(2) = 7.4e-57
Identities = 70/159 (44%), Positives = 107/159 (67%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + +GY + RLDG TP R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 572 QSLVDDFN-SSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ ++ FN + S+ +F++STRAGGLG+NL SA+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 545 EEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQ 604
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
K+ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 605 KKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 643
Score = 317 (116.6 bits), Expect = 7.4e-57, Sum P(2) = 7.4e-57
Identities = 98/319 (30%), Positives = 161/319 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 232
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD----MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + V + G ++D I +++ +V +T
Sbjct: 233 NIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG-DKDARAAFIRDEMMPGEWDVCVT 291
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + +W +++DEAHR+KNEKSKL E K+ NR+ LTGT +QN +
Sbjct: 292 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 351
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + + F ++D + ++ + ER L AVL+ +LL
Sbjct: 352 ELWALLNFLLPDVFNSADDFDSWFDT-----KNCLGDQKLV----ER---LHAVLKPFLL 399
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPLT 429
RR K + L KE + + +S +Q+ Y ++L + +I L K + L
Sbjct: 400 RRIKTDVEKSLPPKKEIKI-YLGLSKMQREWYTKIL-MKDIDVLNSAGKMDKMRLLNILM 457
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 458 QLRKCCNHPYLFDGAEPGP 476
>UNIPROTKB|B4JCS7 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7222 "Drosophila grimshawi" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 EMBL:CH916368
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001988299.1
STRING:B4JCS7 EnsemblMetazoa:FBtr0146056 GeneID:6562163
KEGG:dgr:Dgri_GH10642 FlyBase:FBgn0118123 InParanoid:B4JCS7
OMA:TYQALMG Uniprot:B4JCS7
Length = 786
Score = 358 (131.1 bits), Expect = 8.5e-57, Sum P(2) = 8.5e-57
Identities = 94/320 (29%), Positives = 164/320 (51%)
Query: 137 LLEHQREGVKFLYKLYKNKHGG----ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
L HQREGV+F+Y+ + K G I+ D+MGLGKT+Q + + + TI K
Sbjct: 149 LRPHQREGVRFMYECVEGKRGSFNGCIMADEMGLGKTLQCVTLTWTLLRQSADCKPTISK 208
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRW--STFNVSIYHGPNRDMILEKLEA------- 243
+++ PSS+++NWE EF++W + G +++ LE
Sbjct: 209 ---------AIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEETTRTLEQFAMNTST 259
Query: 244 -CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
CG VL+ S++++R++ IL + +VI DE HRLKN + Y A + LKT+ R+ L+
Sbjct: 260 RCGTPVLLISYETFRLYAHILCKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLS 319
Query: 303 GTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362
GT +QN + E ++L ++V P LGT F+ ++ + GQ + + A + Q L
Sbjct: 320 GTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENAILRGQNADSTDTERERALLKTQEL 379
Query: 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPC 422
+ ++ + ++RRT + +L + K + VV ++ +Q + Y L+ ++ C D C
Sbjct: 380 IGLVNQCIIRRTNQILTKYLPV-KFEMVVCAKLTAVQLQIYTNFLKSDQV-CRSLAD--C 435
Query: 423 SCGSPLT---QVECCKRLDN 439
+ + LT + K+L N
Sbjct: 436 NEKTSLTALSDITTLKKLCN 455
Score = 310 (114.2 bits), Expect = 8.5e-57, Sum P(2) = 8.5e-57
Identities = 67/177 (37%), Positives = 109/177 (61%)
Query: 516 GKMRALEKLMYSW-ASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GK L+ ++ + A+ DK++L S + LD+ E+ ++ YS+ RLDG+ R +
Sbjct: 493 GKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKV 552
Query: 575 VDDFNSSPSKQVFL--ISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
VD FN PS FL +S++AGG GLNL+ ANR+ +FDP+WNPA D QA R +R GQK+
Sbjct: 553 VDRFND-PSSDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKK 611
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK--LEKRYF-EGVQDCKEFQGEL 686
++RL+++GS+EE + RQ +K+ LS+ + +EK + + ++D F+ +
Sbjct: 612 PCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESVEKHFTRDDLKDLFSFEANV 668
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 348 (127.6 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 69/156 (44%), Positives = 101/156 (64%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS RMLDILE + + Y++ RLDG TP R
Sbjct: 427 VYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDR 486
Query: 572 QSLVDDFNSSPS-KQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ +FN S K +F++STRAGGLG+NL +A+ V+I+D +WNP DLQA DR+ R GQ
Sbjct: 487 NRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQ 546
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
K+ V VFRL++ ++EE + R K +L + + G
Sbjct: 547 KKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQG 582
Score = 324 (119.1 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 97/293 (33%), Positives = 151/293 (51%)
Query: 130 PASINC-RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
PA I + ++Q G+ ++ LY+N GIL D+MGLGKT+QTI+ L
Sbjct: 120 PAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLG----------- 168
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW--STFNVSIYHGPN-RDMILEKLEACG 245
LK K ++ G ++I P S +QNW EF +W S V + + R+ + + G
Sbjct: 169 -YLKHFK-NQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPG 226
Query: 246 V-EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
+V +TS++ S+ + NW +++DEAHR+KNEKSKL E KT NR+ +TGT
Sbjct: 227 EWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGT 286
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364
+QN + EL+ L +++ P + E F E+++ G D L A
Sbjct: 287 PLQNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGD------------DALITRLHA 334
Query: 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLIN 417
VL+ +LLRR K E L KE + F +S +Q+ Y ++L L +I ++N
Sbjct: 335 VLKPFLLRRLKAEVEKRLKPKKEMKI-FVGLSKMQRDWYTKVL-LKDID-VVN 384
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 351 (128.6 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 97/280 (34%), Positives = 151/280 (53%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L +Q +GVK+L L++N GIL D MGLGKTIQTI FL+ LK N
Sbjct: 201 QLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSH------------LKGNG 248
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPN--RDMILEKL--EACGVE--V 248
+D G L+I P S + NW E +R++ + N IYHG RD + K + G + +
Sbjct: 249 LD--GPYLVIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPI 306
Query: 249 LITSFD-SYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQ 307
+ITS++ + IL W+ V++DE HRLKN K KL LK N++ LTGT +Q
Sbjct: 307 VITSYEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQ 366
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLR 367
N + EL++L +++ P + + F ++D K+ T E R A + L +LR
Sbjct: 367 NNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSK-LHGILR 425
Query: 368 KYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
++LRR K + + + K++ +++ TM+D QK+ L+
Sbjct: 426 PFILRRMKCD-VELSLPRKKEIIMYATMTDHQKKFQEHLV 464
Score = 315 (115.9 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 62/154 (40%), Positives = 95/154 (61%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V CGK R LE+L+ + K+L+FS ++LDI++ + KG+ R+DGS + R
Sbjct: 520 VGQCGKFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDER 579
Query: 572 QSLVDDFNSSPSK-QVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ + DF+ S +FL+STRAGGLG+NL +A+ +++D +WNP DLQA DR R GQ
Sbjct: 580 RRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQ 639
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
+ V V+RL +A S+E V R K +L ++ +
Sbjct: 640 TKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVI 673
>UNIPROTKB|B3NAN8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7220 "Drosophila erecta" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH954177
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001968502.1
EnsemblMetazoa:FBtr0144523 GeneID:6543248 KEGG:der:Dere_GG24469
FlyBase:FBgn0116601 Uniprot:B3NAN8
Length = 784
Score = 357 (130.7 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 87/290 (30%), Positives = 154/290 (53%)
Query: 137 LLEHQREGVKFLYKLYKNKHGG----ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
L HQREGV+F+Y+ + K G I+ D+MGLGKT+Q + + + + TI
Sbjct: 156 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTI-- 213
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIY--HGPNRDMILEKLEA------- 243
NK +++ PSS+++NWE EF++W + G ++ + LE
Sbjct: 214 -NKA------IVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSR 266
Query: 244 CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303
G VL+ S++++RI+ IL + +VI DE HRLKN + Y A + LKT+ R+ L+G
Sbjct: 267 LGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSG 326
Query: 304 TIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363
T +QN + E Y+L ++V P LGT F+ ++ + GQ + + + A + Q L+
Sbjct: 327 TPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTDAERQRAIAKTQELI 386
Query: 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQ 413
++ + ++RRT + +L + K + V+ ++ +Q Y L+ +++
Sbjct: 387 GLVDQCIIRRTNQILTKYLPV-KFEMVICAKLTSIQLELYTNFLKSDQVR 435
Score = 309 (113.8 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 65/176 (36%), Positives = 107/176 (60%)
Query: 516 GKMRALEKLMYSWASKG-DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GK L+ ++ + + G DK++L S + LD+ E+ ++ Y F RLDG+ R +
Sbjct: 499 GKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKV 558
Query: 575 VDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
VD FN S +F++S++AGG GLNL+ ANR+ +FDP+WNPA D QA R +R GQK+
Sbjct: 559 VDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 618
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK--LEKRYF-EGVQDCKEFQGEL 686
++RL+++GS+EE + RQ +K+ LS+ + EK + + ++D F ++
Sbjct: 619 CYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFTFDADI 674
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 350 (128.3 bits), Expect = 2.2e-56, Sum P(3) = 2.2e-56
Identities = 99/280 (35%), Positives = 154/280 (55%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L E+Q +G++++ LY N GIL D+MGLGKTIQTI+ + + + K N
Sbjct: 537 LKEYQMKGLQWMISLYNNNLNGILADEMGLGKTIQTISLITHIIER---------KRNN- 586
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWSTFNVS--IYHGP-N-RDMILEKLEACGVEVLITS 252
G L+I P S + NW +EF +W+ +VS +Y GP N R + + +VL+T+
Sbjct: 587 ---GPFLVIVPLSTLTNWNLEFEKWAP-SVSRIVYKGPPNARKQQQQNIRWGNFQVLLTT 642
Query: 253 FDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKT-RNRIGLTGTIMQNKIM 311
++ ILS++ W +IVDE HR+KN +SKL + T R R+ LTGT +QN +
Sbjct: 643 YEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLP 702
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKH--GQR---LTAPERFIRIADERKQHLVAVL 366
EL+ L ++V P + + F E+++ P + GQ LT E+ + I R+ H VL
Sbjct: 703 ELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQLLVI---RRLH--KVL 757
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K++ L K++ V+ C S LQ + ++L
Sbjct: 758 RPFLLRRLKKDVEKDLP-DKQERVIKCRFSALQAKLNKQL 796
Score = 333 (122.3 bits), Expect = 2.2e-56, Sum P(3) = 2.2e-56
Identities = 68/168 (40%), Positives = 110/168 (65%)
Query: 508 GLSDV--KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGS 565
G +D+ ++ GK L++++ + + G ++L+F ++++I+E FL +G + RLDGS
Sbjct: 846 GTNDLIWRTAGKFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGS 905
Query: 566 TPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDR 624
T S+ R L+ FN+ S+ FL+STRAGGLGLNL +A+ V+IFD +WNP QDLQAQDR
Sbjct: 906 TKSDDRSDLLKLFNAPDSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDR 965
Query: 625 SFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
+ R GQK V + RL+++ S+EE + R +K + + +GK + +
Sbjct: 966 AHRIGQKNEVRILRLITSNSVEEKILERAQFKLDMDGKVIQAGKFDNK 1013
Score = 40 (19.1 bits), Expect = 2.2e-56, Sum P(3) = 2.2e-56
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 45 KSSLAQQLQRLGETYNFSLPQQNPETRREKAPVEKS 80
+ + +QQ QR G+ L R E+ VE++
Sbjct: 392 RETASQQRQRAGKLGRMMLQHHQHMEREEQRRVERT 427
>UNIPROTKB|F5H493 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0007256 "activation of JNKK
activity" evidence=IEA] [GO:0007257 "activation of JUN kinase
activity" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0009636
"response to toxic substance" evidence=IEA] [GO:0010165 "response
to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0003677 GO:GO:0009636 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
EMBL:AC073366 GO:GO:0006290 GO:GO:0007256 EMBL:AL138760
HGNC:HGNC:3438 ChiTaRS:ERCC6 GO:GO:0000303 IPI:IPI01012579
ProteinModelPortal:F5H493 SMR:F5H493 Ensembl:ENST00000542458
UCSC:uc009xod.3 ArrayExpress:F5H493 Bgee:F5H493 Uniprot:F5H493
Length = 863
Score = 413 (150.4 bits), Expect = 3.4e-56, Sum P(3) = 3.4e-56
Identities = 78/162 (48%), Positives = 116/162 (71%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
K GKM +E L+ W +G ++LLFS S +MLDILE FL + Y++ ++DG+T RQ
Sbjct: 206 KRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQ 265
Query: 573 SLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632
L+ +N S VFL++TR GGLG+NL ANRVVI+DP+WNP+ D QA++R++R GQK+
Sbjct: 266 PLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKK 325
Query: 633 HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFE 674
V V+RLL+AG++EE +Y RQ++KQ L+N + ++R+F+
Sbjct: 326 QVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFK 367
Score = 245 (91.3 bits), Expect = 3.4e-56, Sum P(3) = 3.4e-56
Identities = 55/181 (30%), Positives = 96/181 (53%)
Query: 263 LSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAP 322
+S +W VI+DE H+++N + + +AC + +T +RI L+G+ MQN + EL++LFD++ P
Sbjct: 5 ISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 64
Query: 323 GSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHL 382
G LGT F E + P+ G A ++ A + L + YLLRR K + L
Sbjct: 65 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSL 124
Query: 383 MM-GKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLD 441
+ K + V+FC ++D Q + Y+ + E+ ++N ++ G + + C D
Sbjct: 125 SLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGL-IALRKICNHPDLFS 183
Query: 442 G 442
G
Sbjct: 184 G 184
Score = 46 (21.3 bits), Expect = 3.4e-56, Sum P(3) = 3.4e-56
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 455 LVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFG 491
L+ L++I NH +L P++ K D EL FG
Sbjct: 169 LIALRKICNHPDLFSGGPKNL--KGLPDDELEEDQFG 203
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 411 (149.7 bits), Expect = 3.6e-56, Sum P(3) = 3.6e-56
Identities = 74/160 (46%), Positives = 116/160 (72%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR-KGYSFSRLDGSTPSNLRQSL 574
GKM+ + L+ W G K LLF+ MLDILEKF+ G+++ R+DG+TP RQ++
Sbjct: 736 GKMQVVRSLLELWKETGHKTLLFAQHRIMLDILEKFVKSLSGFNYRRMDGTTPIQHRQTM 795
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
VD+FN P VFL++T+ GGLG+NL A+RV+I+DP+WNP+ D+QA++R++R GQKR V
Sbjct: 796 VDEFNKDPDLHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDV 855
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFE 674
++RL++AG++EE +Y RQ++KQ L+N + +++ F+
Sbjct: 856 TIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRQTFQ 895
Score = 260 (96.6 bits), Expect = 3.6e-56, Sum P(3) = 3.6e-56
Identities = 57/169 (33%), Positives = 97/169 (57%)
Query: 248 VLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQ 307
VL+T++ + + S+L V W I+DE H+++N + + M EL+T +RI L+GT MQ
Sbjct: 528 VLVTTYSGLQSYASLLIPVEWGGTILDEGHKIRNPNTSITMHAKELRTPHRIILSGTPMQ 587
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLR 367
N + EL++LFD+V P LGT +FR ++ P++ G A ++ A + + L +
Sbjct: 588 NNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCAETLKDAIS 647
Query: 368 KYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLI 416
YLL+R K + L K + V+FC ++ Q++AY L E+Q ++
Sbjct: 648 PYLLQRFKIDVAADLPK-KSEQVLFCRLTKPQRQAYEAFLGSEEMQSIL 695
Score = 201 (75.8 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 58/179 (32%), Positives = 97/179 (54%)
Query: 112 PFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQ 171
P +P L D Y ++P I+ L ++Q+ GV+++++L++ + GGI+GD+MGLGKTIQ
Sbjct: 377 PTQP-DLHLDNGY---RIPGDIHPLLFDYQKTGVQWMWELHQQQVGGIIGDEMGLGKTIQ 432
Query: 172 TIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYH 230
IAFLA + ++ K ++++CP++V++ W EF RW F VSI H
Sbjct: 433 AIAFLAGLH-----------YSKRLTKP--IIVVCPATVMKQWVNEFHRWWPPFRVSILH 479
Query: 231 GPNRDMILEKLEACGVEVLITSFDSYRIHGSILS-EVNWEIV--IVDEAHRLKNEKSKL 286
M+ K E+ + L+ + +Y GS + ++V +V+E H L S L
Sbjct: 480 TSGSGMVNIKSESSREDALM--YGTYWSGGSSSGLKAARKVVKRVVEEGHVLVTTYSGL 536
Score = 42 (19.8 bits), Expect = 3.6e-56, Sum P(3) = 3.6e-56
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 180 FGKDESSDSTILKDNKVDKKG 200
FG DE+S+ST ++ ++ G
Sbjct: 217 FGFDETSESTAAEEQAHERPG 237
Score = 37 (18.1 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 650 YTRQVY--KQQLSNIAVSGKLEKRYFEGVQDCKEFQGE 685
Y R V KQ +S + +E+ E Q K+ GE
Sbjct: 942 YQRDVEAEKQDISKVTGVAAIEQFQGEPEQQAKQESGE 979
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 338 (124.0 bits), Expect = 3.9e-56, Sum P(2) = 3.9e-56
Identities = 97/288 (33%), Positives = 148/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EGV +L + N+ IL D+MGLGKTIQ+IAFL V+
Sbjct: 36 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYN-------------- 81
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
V G L+I P S I NWE EF+ W+ N +YHG +R MI + C
Sbjct: 82 VGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 141
Query: 245 GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
G + LIT+F+ L E+ W VI+DEAHRLKN KL + + +++ L
Sbjct: 142 GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLL 201
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADERKQ 360
TGT +QN + EL++L ++ P + F ++F D LK +E+ Q
Sbjct: 202 TGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD--LK--------------TEEQVQ 245
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L A+L+ +LRR KE+ +L K++ ++ ++++QK+ YR +L+
Sbjct: 246 KLQAILKPMMLRRLKEDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 292
Score = 327 (120.2 bits), Expect = 3.9e-56, Sum P(2) = 3.9e-56
Identities = 66/146 (45%), Positives = 96/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+S GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y + R+DG NLR
Sbjct: 355 VRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLR 414
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 415 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 474
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ + K
Sbjct: 475 SKAVKVYRLITRNSYEREMFDKASLK 500
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 345 (126.5 bits), Expect = 4.3e-56, Sum P(2) = 4.3e-56
Identities = 70/159 (44%), Positives = 105/159 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + + Y + RLDG TP R
Sbjct: 462 VVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEER 521
Query: 572 QSLVDDFNS-SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q ++ FN + SK +F++STRAGGLG+NL +A+ V+I+D +WNP DLQA DR+ R GQ
Sbjct: 522 QISINAFNEPNSSKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQ 581
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
K+ V VFR ++ ++EE + R K +L +I + G+L
Sbjct: 582 KKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRL 620
Score = 322 (118.4 bits), Expect = 4.3e-56, Sum P(2) = 4.3e-56
Identities = 98/319 (30%), Positives = 156/319 (48%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L ++Q G+ +L LY+N GIL D+MGLGKT+QTI+ L +K +
Sbjct: 162 KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLG------------YMKHYR 209
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD---MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + G + I + L +V +T
Sbjct: 210 -NIPGPHMVLVPKSTLYNWMNEFKRWVPSLKAVCLIGDREERTAFIRDTLLPGEWDVCVT 268
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ I ++ + NW +++DEAHR+KNEKSKL E KT NR+ LTGT +QN +
Sbjct: 269 SYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLH 328
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + E F ++D + + ER L VLR +LL
Sbjct: 329 ELWALLNFLLPDVFNSSEDFDAWFDT-----NNCLGDTKLV----ER---LHTVLRPFLL 376
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPLT 429
RR K + L+ KE + + +S +Q+ Y ++L + +I L K + L
Sbjct: 377 RRIKADVEKSLLPKKEIKI-YVGLSKMQREWYTKIL-MKDIDILNSAGKMDKMRLLNVLM 434
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 435 QLRKCCNHPYLFDGAEPGP 453
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 353 (129.3 bits), Expect = 5.7e-56, Sum P(2) = 5.7e-56
Identities = 68/161 (42%), Positives = 109/161 (67%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ + +G ++L+FS RMLD+LE F + Y + RLDGSTP R
Sbjct: 431 VDNSGKMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDR 490
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ ++ +N+ SK+ +F+++TRAGGLG+NL +A+ V+I+D +WNP DLQA DR+ R GQ
Sbjct: 491 SNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQ 550
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKLEK 670
K+ V VFRL++ +++E + + K +L NI + G++ +
Sbjct: 551 KKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSE 591
Score = 312 (114.9 bits), Expect = 5.7e-56, Sum P(2) = 5.7e-56
Identities = 93/293 (31%), Positives = 148/293 (50%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N + ++Q G+ +L L NK GIL D+MGLGKT+QTI+ + +K
Sbjct: 129 NGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIG------------YMKH 176
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPN-------RDMIL-EKLEAC 244
K +K L+I P S +QNW EF +W + N + G RD+IL +K + C
Sbjct: 177 YK-NKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVC 235
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
T+++ + L ++NW +I+DEAHR+KNEKSKL EL + NR+ +TGT
Sbjct: 236 -----CTTYEMMLKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGT 290
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364
+QN + EL+ L +++ P + + F ++ G + Q L
Sbjct: 291 PLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSGNT------------DLVQRLHK 338
Query: 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLIN 417
VL+ +LLRR K + L+ KE V + +S +Q+ Y ++L + +I +IN
Sbjct: 339 VLQPFLLRRIKSDVEKSLLPKKEVKV-YVGLSKMQREWYTKVL-MKDID-IIN 388
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 354 (129.7 bits), Expect = 8.1e-56, Sum P(2) = 8.1e-56
Identities = 96/280 (34%), Positives = 149/280 (53%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q G++++ LY N GIL D+MGLGKTIQTI+ + + K +
Sbjct: 416 KLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQN--------- 466
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHGPN--RDMILEKLEACGVEVLITS 252
G L+I P S + NW +EF RW+ V I Y GP R + ++ +VL+T+
Sbjct: 467 ----GPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSNFQVLLTT 522
Query: 253 FDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL-KTRNRIGLTGTIMQNKIM 311
++ +LS + W +I+DE HR+KN +SKL +R R+ LTGT +QN +
Sbjct: 523 YEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLP 582
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKH--GQ---RLTAPERFIRIADERKQHLVAVL 366
EL+ L ++V P + + F E+++ P + GQ LT E + I R+ H VL
Sbjct: 583 ELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVI---RRLH--KVL 637
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K++ L K + V+ C MS LQ++ Y ++
Sbjct: 638 RPFLLRRLKKDVEAELP-DKVEKVIRCQMSGLQQKLYYQM 676
Score = 312 (114.9 bits), Expect = 8.1e-56, Sum P(2) = 8.1e-56
Identities = 65/159 (40%), Positives = 103/159 (64%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GK L++++ G +IL+F ++++I+E +L + + + RLDGST ++ R L+
Sbjct: 736 GKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLL 795
Query: 576 DDFNSSPSKQV--FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
FN P+ +V FL+STRAGGLGLNL +A+ V+IFD +WNP QDLQAQDR+ R GQ +
Sbjct: 796 GVFND-PTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKE 854
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V ++RL++ S+EE + R YK + + +GK + +
Sbjct: 855 VRIYRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNK 893
Score = 46 (21.3 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 112 PFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLY--KNKHGGILGDDMGLGKT 169
PF L KD E ++P + +++ Q G++ KLY KHG + +D GKT
Sbjct: 639 PFLLRRLKKDVE---AELPDKVE-KVIRCQMSGLQ--QKLYYQMKKHGMLYVEDAKRGKT 692
Score = 38 (18.4 bits), Expect = 4.8e-27, Sum P(2) = 4.8e-27
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 610 DPNWNPAQDLQAQDRSFRFGQKRHV 634
D W D++++ R R KR++
Sbjct: 1008 DAQWMAEMDMESEARPTRGRPKRNI 1032
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 343 (125.8 bits), Expect = 8.6e-56, Sum P(2) = 8.6e-56
Identities = 118/347 (34%), Positives = 174/347 (50%)
Query: 108 DHTGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLG 167
+H GP EPL ++ E P +Q RL +Q EGV +L + + ++G ILGD+MGLG
Sbjct: 15 EH-GP-EPL-RTRVQE-PDLQQWGLTGIRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLG 70
Query: 168 KTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNV 226
KT QTIA L + G+ L D +G L++CP SV+ NW+ E R++ +
Sbjct: 71 KTCQTIALLIYLVGR--------LND-----EGPFLVLCPLSVLSNWKEEMERFAPGLSC 117
Query: 227 SIYHGPN--RDMILEKL-EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283
Y G R + + L + G VL+T+++ S L +W ++ VDEAHRLKN+
Sbjct: 118 VTYTGDKEERARLQQDLRQESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQS 177
Query: 284 SKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQ 343
S L+ E R+ LTGT +QN + ELY+L V P L RE +F Q
Sbjct: 178 SLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEP-DLFCREQVEDFV-------Q 229
Query: 344 RLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
R E+ + A E L +L+ +LLRR K + L K + VV+ MS LQK+ Y
Sbjct: 230 RYQDIEKESKSASE----LHRLLQPFLLRRVKAQVATELPK-KTEVVVYHGMSALQKKYY 284
Query: 404 RRLLQLPEIQCLINKDLP-CSCGSPLTQVECCKRLDNL-DGCDSCPF 448
+ +L + ++ N+ + LTQ+ C L DG + PF
Sbjct: 285 KAIL-MKDLDAFENETAKKVKLQNILTQLRKCVDHPYLFDGVEPEPF 330
Score = 319 (117.4 bits), Expect = 8.6e-56, Sum P(2) = 8.6e-56
Identities = 66/164 (40%), Positives = 103/164 (62%)
Query: 504 ESF-IGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRL 562
E F +G +++ GK+ L++L+ S G ++LLFS MLDIL+ ++ +GYS+ R+
Sbjct: 328 EPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERV 387
Query: 563 DGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQ 622
DGS R + +F + P VFL+STRAGG+G+NL +A+ V+ D ++NP DLQA
Sbjct: 388 DGSVRGEERHLAIKNFGNQPIF-VFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAA 446
Query: 623 DRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
R+ R GQ + V V RL+ ++EE+VY + K QL+N+ + G
Sbjct: 447 ARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 347 (127.2 bits), Expect = 9.0e-56, Sum P(2) = 9.0e-56
Identities = 92/281 (32%), Positives = 154/281 (54%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q +G++++ LY N GIL D+MGLGKTIQ+I+ + T L + K
Sbjct: 500 KLKEYQMKGLEWMVSLYNNHLNGILADEMGLGKTIQSISLV------------TYLIEKK 547
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPN--RDMILEKLEACGVEVLITS 252
+ K LII P S I NW +EF +W+ + V +Y G R + + +VL+T+
Sbjct: 548 HENK--FLIIVPLSTITNWTLEFEKWAPSIKVIVYKGSQQQRRSLQPDIRYGNFQVLLTT 605
Query: 253 FDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL-KTRNRIGLTGTIMQNKIM 311
++ +L++ ++ +I+DE HR+KN +SKL KT+NR+ LTGT +QN +
Sbjct: 606 YEYVIRERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNLP 665
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERK----QHLVAVLR 367
EL+ L ++V PG + + F ++++ P + T + I + +E + L VLR
Sbjct: 666 ELWALLNFVLPGIFNSVKSFDDWFNTPFAN----TGAQEKIELTEEESLLVIRRLHKVLR 721
Query: 368 KYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
+LLRR K++ L K + V+ C +S LQ Y+++L+
Sbjct: 722 PFLLRRLKKDVEKDLP-DKVEKVLKCNLSGLQYVLYQQMLK 761
Score = 320 (117.7 bits), Expect = 9.0e-56, Sum P(2) = 9.0e-56
Identities = 66/158 (41%), Positives = 100/158 (63%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GK L++++ + G ++L+F +++DI+E FL K + RLDGST + RQ ++
Sbjct: 820 GKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDML 879
Query: 576 DDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
FN+ S FL+STRAGGLGLNL +A+ V+IFD +WNP QDLQAQDR+ R GQK V
Sbjct: 880 KVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEV 939
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
+ RL++ S+EE++ R K + + +GK + +
Sbjct: 940 RILRLITNDSVEEVILERAHQKLDIDGKVIQAGKFDNK 977
Score = 49 (22.3 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 328 REHFREFY-DEPLKHGQRLTAPERFIRIADERKQHLVAVLRK----YL--LRRTKEETIG 380
R+H+R Y + + + T E ++ KQ L A+ YL L +TK+ I
Sbjct: 362 RDHYRSHYLVRQINNFHQTTEKEESKKLERTAKQRLQALRSNDEEAYLKLLDKTKDHRIT 421
Query: 381 HLMMGKEDN 389
HL+ K+ N
Sbjct: 422 HLL--KQTN 428
Score = 37 (18.1 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 349 ERFIRIADERKQHLVAVLRKYLLRRTKE 376
E ++++ D+ K H + +LL++T +
Sbjct: 406 EAYLKLLDKTKDHRIT----HLLKQTNQ 429
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 373 (136.4 bits), Expect = 9.0e-56, Sum P(3) = 9.0e-56
Identities = 88/256 (34%), Positives = 150/256 (58%)
Query: 133 INCRLLEHQREGVKFLYKLYKN-KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTIL 191
++ +L +HQREGV FLY+L++ + GGIL DDMGLGKTIQ IAFL+ +F DS ++
Sbjct: 76 MHAKLFQHQREGVAFLYRLHREGRPGGILADDMGLGKTIQIIAFLSGMF------DSELI 129
Query: 192 KDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPN---RDMILEKLEACGVE 247
+ +VL+I P++++ +W EF+RW+ V +HG + R LEK++
Sbjct: 130 R--------HVLLIMPTTLVSSWLAEFARWTPGLRVKEFHGTSKTERTRNLEKIQRKN-G 180
Query: 248 VLITSFDSYRIHGSILSEVN-----WEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
++ITS+ + L+ + W+ +I+DEAH++K +K + ++R+ LT
Sbjct: 181 IVITSYQMLINNWKQLASCHGQDFVWDYIILDEAHKIKCPSNKTTKCVYAIPAKHRLLLT 240
Query: 303 GTIMQNKIMELYNLFDWVAPGSL-GTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361
GT +QN + E+++LFD+ GSL GT + FR Y+ P+ + A + + ++
Sbjct: 241 GTPLQNNLQEMWSLFDFACQGSLLGTAKTFRMEYENPITRAREKDATVGEKALGLKISEN 300
Query: 362 LVAVLRKYLLRRTKEE 377
L+ +++ Y LRRTK++
Sbjct: 301 LMTIIKPYFLRRTKDD 316
Score = 254 (94.5 bits), Expect = 9.0e-56, Sum P(3) = 9.0e-56
Identities = 54/125 (43%), Positives = 80/125 (64%)
Query: 509 LSD---VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGS 565
LSD ++ GKM L L+ +G + L+FS S +MLDI+E+ L + + R+DG+
Sbjct: 436 LSDETLIQESGKMLFLVGLLGRLREEGHRTLVFSQSRKMLDIIERVLSSRQFKIMRIDGT 495
Query: 566 -TPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDR 624
T R+ ++ F S+ VFL++T+ GG+G+ L +ANRVVIFDP+WNPA D QA DR
Sbjct: 496 VTHLTEREKRINAFQSNKDYSVFLLTTQVGGVGITLTAANRVVIFDPSWNPATDAQAVDR 555
Query: 625 SFRFG 629
++R G
Sbjct: 556 AYRIG 560
Score = 54 (24.1 bits), Expect = 9.0e-56, Sum P(3) = 9.0e-56
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 386 KEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRL 437
K D VV+ ++ +Q++ YR L L + K++ + SPL ++ K+L
Sbjct: 347 KNDFVVWVYLAPVQEKIYRNFLCLDHV-----KEVLTTTRSPLAELTVLKKL 393
Score = 40 (19.1 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 721 CTNQGFKGLETHIVSSKDSNT-LLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDI 779
CT G E ++ +S +LS +K SD + + S +L +G++ R +
Sbjct: 405 CTQLDLDGQE-YLEQDHESEAAVLSGANKIDHLSDETLIQESGKMLFLVGLLGRLREEGH 463
Query: 780 VNKQPGFQRKKEESIPQDLSSR 801
RK + I + LSSR
Sbjct: 464 RTLVFSQSRKMLDIIERVLSSR 485
Score = 40 (19.1 bits), Expect = 6.5e-19, Sum P(3) = 6.5e-19
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 55 LGETYNFSLPQQNPETR-REK 74
LG F + +NP TR REK
Sbjct: 264 LGTAKTFRMEYENPITRAREK 284
Score = 37 (18.1 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 238 LEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAH 277
+++LEA E+ +T+ + G+ + +++ E H
Sbjct: 38 IQRLEAALAELAVTAEEEEEDDGNFVDVCGSGLLLYGEMH 77
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 596 (214.9 bits), Expect = 9.2e-56, Sum P(3) = 9.2e-56
Identities = 169/544 (31%), Positives = 283/544 (52%)
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFG-KDESSD 187
+P +I L ++Q+EGV +L L K GIL DDMGLGKT+QTI +++ ++E+
Sbjct: 1294 LPVTIKATLRKYQQEGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIVSSDHHIREENFK 1353
Query: 188 STILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTF-NVSIYHGPNRDMILEKLEACGV 246
T + +K L+ICP S+I +WE E ++++ F V +Y G I + +
Sbjct: 1354 ET---GSAEYRKLPSLVICPPSLIGHWEQEINQYAPFMKVLVYAGSPSIRIPLRGQIPDA 1410
Query: 247 EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIM 306
+V++TS+D R L++ ++ ++DE H +KN SKL + +K +R+ L+GT +
Sbjct: 1411 DVVVTSYDVCRNDVESLTKHDYNYCVLDEGHIIKNASSKLSKSVKRVKAEHRLILSGTPI 1470
Query: 307 QNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVL 366
QN ++EL++LFD++ PG LGT + F E + +P+ + + + L +
Sbjct: 1471 QNNVLELWSLFDFLMPGFLGTEKVFHEKFAKPIAASRNSKTSSKEQEAGALAMESLHKQV 1530
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGS 426
++LRR KE+ + L K +C +SDLQK+ Y+ + + I D+ S
Sbjct: 1531 LPFMLRRLKEDVLSDLPP-KIIQDYYCELSDLQKKLYKDFAKTQKET--IKTDVQGSEKE 1587
Query: 427 PLTQV-ECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIK-PNPRDEPDKQRKDAE 484
T V + + + L C+ P LV +Q + E+ + R+ + + A
Sbjct: 1588 GKTHVFQALQYMRKL--CNH-------PALVMSEQHPKYAEINQFLISRNTDLRNIEHAP 1638
Query: 485 LASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRM 544
++ ++ G+ +E +S KS + + + + + L+F M
Sbjct: 1639 KLLSLKNLLLECGIGSQDSEYNNNVSKKKSLQQQQQQQLISADGVISEHRALIFCQLKDM 1698
Query: 545 LDILEKFLIRK---GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLV 601
LDI+E L+RK +F RLDGST RQS+V FN PS V L++T+ GGLGLNL
Sbjct: 1699 LDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLTTKVGGLGLNLT 1758
Query: 602 SANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSN 661
A+ V+ + +WNP DLQA DR+ R GQK+ V V+RL++ +LEE + Q +K +++
Sbjct: 1759 GADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKIMGLQKFKMNIAS 1818
Query: 662 IAVS 665
V+
Sbjct: 1819 TIVN 1822
Score = 46 (21.3 bits), Expect = 9.2e-56, Sum P(3) = 9.2e-56
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 123 EYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILG 161
E +I++ +N +L Q++ V K ++ KHGGILG
Sbjct: 430 EETVIRIFHCLNSMVL--QKDMVA---KCWEAKHGGILG 463
Score = 43 (20.2 bits), Expect = 9.2e-56, Sum P(3) = 9.2e-56
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 38 IIPRRPPKSSLAQQLQRLGETYNFSLPQQNPETRRE 73
IIP+ KS L+++ T + +Q P T+++
Sbjct: 180 IIPKEETKSDLSKESSPDAHTKEEPIVKQEPGTQQQ 215
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 350 (128.3 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
Identities = 103/292 (35%), Positives = 157/292 (53%)
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
+P + L E+Q G+ +L LY N GIL D+MGLGKTIQTIA LA
Sbjct: 817 IPHLLRGTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAH---------- 866
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEK----LEA 243
+ ++ V G L++ P+SVI NWE+EF +W F + Y+G N++ +K ++
Sbjct: 867 -LAVEHGV--WGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYG-NQEERRQKRRGWMDD 922
Query: 244 CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303
VLITS+ +L +W +I+DEAH +KN +S+ + A L +TR R+ LTG
Sbjct: 923 NSWNVLITSYQLVLQDQQVLKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTG 982
Query: 304 TIMQNKIMELYNLFDWVAP------GSLGTRE--HFREFYDEP----LKHGQRLTAPERF 351
T +QN + EL++L ++ P G G + +F E++ P L+HG R T +
Sbjct: 983 TPLQNNLTELWSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQILEHG-RETMDDEA 1041
Query: 352 IRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
++ K H VLR Y+LRR K + + M GK ++VV+C +S Q+ Y
Sbjct: 1042 KQVVT--KLH--TVLRPYILRRLKAD-VEKQMPGKYEHVVYCRLSKRQRYLY 1088
Score = 318 (117.0 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
Identities = 64/171 (37%), Positives = 103/171 (60%)
Query: 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
CGK++ L+KL+ + G + L+F+ +MLD+LE+FL G+ + RLDG+T RQ L
Sbjct: 1372 CGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQIL 1431
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
D FN+ F++S+R+GGLG+NL A+ V+ +D +WNPA D Q QDR R GQ R V
Sbjct: 1432 TDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDV 1491
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKLEKRYFEGVQDCKEFQG 684
++R +S ++E + + K+ L ++ + G+ YF + D ++ G
Sbjct: 1492 HIYRFVSEYTIESNILRKANQKRMLDDVVIQEGEFTTDYFTKL-DVRDMIG 1541
Score = 50 (22.7 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 451 VLPCLVKLQQISNHLELIKPNP 472
++ CL++L+++ NH +L + P
Sbjct: 1109 IINCLMQLRKVCNHPDLFETRP 1130
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 333 (122.3 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 92/280 (32%), Positives = 148/280 (52%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N L +Q +G++++ LY N GIL D+MGLGKTIQTI+ + T L +
Sbjct: 530 NLLLKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLV------------TYLME 577
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPN--RDMILEKLEACGVEVLI 250
K + Y L+I P S + NW+ EF++W+ + IY G R + ++ VL+
Sbjct: 578 VKQNNGPY-LVIVPLSTLSNWQNEFAKWAPSVTTIIYKGTKDARRRVEGQIRKGAFNVLM 636
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL-KTRNRIGLTGTIMQNK 309
T+++ ++L ++ W+ +I+DE HRLKN KL + ++R+ LTGT +QNK
Sbjct: 637 TTYEYVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNK 696
Query: 310 IMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQR--LTAPERFIRIADERKQHLVAVL 366
+ EL+ L +++ P + F ++++ P G++ L E + I R+ H VL
Sbjct: 697 LPELWALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLII---RRLH--KVL 751
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C S LQK YR +
Sbjct: 752 RPFLLRRLKKEVESQLP-DKTEYVIKCDQSALQKVIYRHM 790
Score = 330 (121.2 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 70/167 (41%), Positives = 107/167 (64%)
Query: 508 GLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTP 567
G ++ GK+ L++++ + G +IL+F M++I E FL + Y++ RLDGST
Sbjct: 842 GTDLMRVAGKLELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTK 901
Query: 568 SNLRQSLVDDFNSSPSKQVFL--ISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRS 625
+ R L+ FN+ P+ +FL +STRAGGLGLNL +A+ V+IFD +WNP QD+QAQDR+
Sbjct: 902 PDERGDLLTQFNA-PNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRA 960
Query: 626 FRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
R GQK+ V V RL++A S+EE + YK + + +GK ++R
Sbjct: 961 HRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGKFDQR 1007
Score = 52 (23.4 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 21/78 (26%), Positives = 33/78 (42%)
Query: 728 GLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQ 787
G T + D LL ++T E+ +S E +G ++ + D +N +
Sbjct: 1240 GRYTVMEELNDDMNLLVNNAQTYNEEGSEIYVSS----ETIGKLWKEQYDKFMNPPKPVE 1295
Query: 788 ---RKKEESIPQDLSSRP 802
+KKE S P SSRP
Sbjct: 1296 EPVKKKEPSTPSTSSSRP 1313
Score = 45 (20.9 bits), Expect = 8.8e-54, Sum P(4) = 8.8e-54
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 750 RKSSDPEMARTSKPLLEDMGIVYAHRNDD 778
+K +DPE+A +L+ ++ ++N+D
Sbjct: 1175 KKKTDPELAEKINEMLD---VILEYKNED 1200
Score = 38 (18.4 bits), Expect = 8.8e-54, Sum P(4) = 8.8e-54
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 787 QRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKE 820
+ KK++ +S PPP K++ D D E
Sbjct: 1405 EAKKDDEPSTSSASAPPP--KKKKESEDSEDPME 1436
Score = 37 (18.1 bits), Expect = 2.9e-23, Sum P(4) = 2.9e-23
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 357 ERKQHLVAVLRKYLLRRTKEETI 379
+R L L Y RRTK +++
Sbjct: 237 KRDTTLETALNPYAYRRTKRQSL 259
Score = 37 (18.1 bits), Expect = 2.9e-23, Sum P(4) = 2.9e-23
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 460 QISNHLELIKPNPRDEPDKQRKDAEL 485
+I ++L+ P D PD + AE+
Sbjct: 189 RIGLRMKLLNNLPADIPDHMKLKAEI 214
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 351 (128.6 bits), Expect = 2.5e-55, Sum P(2) = 2.5e-55
Identities = 71/161 (44%), Positives = 108/161 (67%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + +GY + RLDG TP R
Sbjct: 495 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 554
Query: 572 QS--LVDDFNS-SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRF 628
+ ++ FN+ + SK +F++STRAGGLG+NL SA+ V+++D +WNP DLQA DR+ R
Sbjct: 555 EKKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRI 614
Query: 629 GQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
GQK+ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 615 GQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 655
Score = 309 (113.8 bits), Expect = 2.5e-55, Sum P(2) = 2.5e-55
Identities = 97/319 (30%), Positives = 159/319 (49%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 195 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 241
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD----MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + V + G ++D I +++ +V +T
Sbjct: 242 NIPGPHMVLVPKSTLYNWMNEFKRWVPSLRVICFVG-DKDARAAFIRDEMMPGEWDVCVT 300
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + +W +++DEAHR+KNEKSKL E K+ NR+ LTGT +QN +
Sbjct: 301 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 360
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + + F ++D + ++ + ER L AVL+ +LL
Sbjct: 361 ELWALLNFLLPDVFNSADDFDSWFDT-----KNCLGDQKLV----ER---LHAVLKPFLL 408
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPLT 429
RR K + L KE V + +S +Q+ + + + +I L K + L
Sbjct: 409 RRIKTDVEKSLPPKKEIKV-YLGLSKMQREWWYTKILMKDIDVLNSAGKMDKMRLLNILM 467
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 468 QLRKCCNHPYLFDGAEPGP 486
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 339 (124.4 bits), Expect = 3.1e-55, Sum P(2) = 3.1e-55
Identities = 107/319 (33%), Positives = 158/319 (49%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
RL +Q EGV +L + + ++G ILGD+MGLGKT QTIA L + G+ L D
Sbjct: 39 RLRSYQLEGVNWLVQCFHGQNGCILGDEMGLGKTCQTIALLIYLVGR--------LND-- 88
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEA---CGVEVLIT 251
+G LI+CP SV+ NW+ E R++ + Y G + + + G VL+T
Sbjct: 89 ---EGPFLILCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARRQQDLRQESGFHVLLT 145
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
+++ S L +W ++ VDEAHRLKN+ S L+ E R+ LTGT +QN +
Sbjct: 146 TYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQ 205
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
ELY+L V P L RE +F Q E+ + A E L +LR +LL
Sbjct: 206 ELYSLLSVVEP-DLFCREQVEDFV-------QCYQDIEKESKSASE----LHRLLRPFLL 253
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLP-CSCGSPLTQ 430
RR K + L K + V++ MS LQK+ Y+ +L + ++ N+ + LTQ
Sbjct: 254 RRVKAQVATELPK-KTEVVIYHGMSALQKKYYKAIL-MKDLDAFENETAKKVKLQNVLTQ 311
Query: 431 VECCKRLDNL-DGCDSCPF 448
+ C L DG + PF
Sbjct: 312 LRKCVDHPYLFDGVEPEPF 330
Score = 318 (117.0 bits), Expect = 3.1e-55, Sum P(2) = 3.1e-55
Identities = 66/164 (40%), Positives = 102/164 (62%)
Query: 504 ESF-IGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRL 562
E F +G +++ GK+ L++L+ S G ++LLFS MLDIL+ ++ +GYS+ R+
Sbjct: 328 EPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERV 387
Query: 563 DGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQ 622
DGS R + +F P VFL+STRAGG+G+NL +A+ V+ D ++NP DLQA
Sbjct: 388 DGSVRGEERHLAIKNFGKQPIF-VFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAA 446
Query: 623 DRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
R+ R GQ + V V RL+ ++EE+VY + K QL+N+ + G
Sbjct: 447 ARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 339 (124.4 bits), Expect = 3.2e-55, Sum P(2) = 3.2e-55
Identities = 68/159 (42%), Positives = 105/159 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + + Y + RLDG TP + R
Sbjct: 464 VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER 523
Query: 572 QSLVDDFNS-SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ ++ +N SK VF++STRAGGLG+NL +A+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 524 QASINAYNEPGSSKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQ 583
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
+ V VFR ++ ++EE + R K +L +I + G+L
Sbjct: 584 TKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRL 622
Score = 320 (117.7 bits), Expect = 3.2e-55, Sum P(2) = 3.2e-55
Identities = 103/320 (32%), Positives = 157/320 (49%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L ++Q G+ +L LY+N GIL D+MGLGKT+QTI+ L +K +
Sbjct: 164 KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLG------------YMKHYR 211
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPN--RDMILEKLEACGV-EVLIT 251
+ G +++ P S + NW EF RW T G R + + G +V +T
Sbjct: 212 -NIPGPHMVLVPKSTLHNWMNEFKRWVPTLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVT 270
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + NW +++DEAHR+KNEKSKL E KT NR+ LTGT +QN +
Sbjct: 271 SYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLH 330
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRLTAPERFIRIADERKQHLVAVLRKYL 370
EL+ L +++ P + E F ++D G Q+L ER H+V LR +L
Sbjct: 331 ELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQKLV--ERL---------HMV--LRPFL 377
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPL 428
LRR K + L KE + + +S +Q+ Y R+L + +I L K + L
Sbjct: 378 LRRIKADVEKSLPPKKEVKI-YVGLSKMQREWYTRIL-MKDIDILNSAGKLDKMRLLNIL 435
Query: 429 TQV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 436 MQLRKCCNHPYLFDGAEPGP 455
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 341 (125.1 bits), Expect = 3.5e-55, Sum P(2) = 3.5e-55
Identities = 98/288 (34%), Positives = 149/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EGV +L + N+ IL D+MGLGKTIQ+IA L+ +F S
Sbjct: 846 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLSEMFSAGVQSP-------- 897
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
+II P S I NWE EFS W+ N +YHG +R MI + C
Sbjct: 898 ------FMIIAPLSTITNWEREFSNWTDMNAIVYHGSLASRQMIQQYEMYCKDDKGHLIP 951
Query: 245 GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
G + LIT+F+ L E++W V++DEAHRLKN KL + L+ +++ L
Sbjct: 952 GAYKFDALITTFEMILSDCPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLL 1011
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTR-EHFREFYDEPLKHGQRLTAPERFIRIADERKQ 360
TGT +QN + EL++L ++ P + E REF D LK +E+ Q
Sbjct: 1012 TGTPLQNTVEELFSLLHFLEPAQFPSEIEFLREFGD--LK--------------TEEQVQ 1055
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L ++L+ +LRR KE+ +L K++ ++ ++D+QK+ YR +L+
Sbjct: 1056 KLQSILKPMMLRRLKEDVEKNLAP-KQETIIEVELTDVQKKYYRAILE 1102
Score = 328 (120.5 bits), Expect = 3.5e-55, Sum P(2) = 3.5e-55
Identities = 68/136 (50%), Positives = 91/136 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+S GK+ L+KL+ + G K+L+FS VR LDILE +LI K Y + R+DG NLR
Sbjct: 1166 VRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLR 1225
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ VIFD +WNP DLQAQ R R GQ
Sbjct: 1226 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQ 1285
Query: 631 KRHVIVFRLLSAGSLE 646
+ V V+RL++ S E
Sbjct: 1286 SKAVKVYRLITRNSYE 1301
Score = 50 (22.7 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
Identities = 30/116 (25%), Positives = 46/116 (39%)
Query: 466 ELIKPNPRDEPDKQRKDAELASA---VFGPDI-DLVGGNAQNESFIGLSDVKSCGKMRAL 521
+ + PN K+RKD EL A + P DL +N + D+ R
Sbjct: 2262 QALMPNGEGSARKKRKDHELEDAEGVLHAPRRRDLPNWLKENPDYEVEGDMLELLVNRTK 2321
Query: 522 EKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDD 577
K KG L S V+++DI R G F+ + G +LR+ L ++
Sbjct: 2322 RKRRRKRVEKG-AALTGSERVKVIDI------RTGKKFAGVFGPALQDLREHLEEN 2370
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 346 (126.9 bits), Expect = 3.6e-55, Sum P(3) = 3.6e-55
Identities = 96/285 (33%), Positives = 152/285 (53%)
Query: 126 IIQVPASINC-RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDE 184
II+ PA + +L +Q +G++++ LY NK GIL D+MGLGKTIQTIA ++ +
Sbjct: 1699 IIEQPALLEGGKLKPYQMQGLQWMVSLYNNKLNGILADEMGLGKTIQTIALVSYLI---- 1754
Query: 185 SSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHG--PNRDMILEKL 241
+ K+N G L++ P S + NW EFS+W+ +Y+G P R E+
Sbjct: 1755 ----EVKKNN-----GPFLVVVPLSTLSNWGQEFSKWAPKVKRVLYYGDKPARKSKFEEF 1805
Query: 242 EACG-VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRI 299
A G ++T+++ + LS++ W +IVDE HR+KN SKL + +R R+
Sbjct: 1806 IAPGQFNAVVTTYEYIIKDKNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSRYRL 1865
Query: 300 GLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADER 358
LTGT +QN + EL+ L +++ P E F ++++ P G+++ E + +R
Sbjct: 1866 LLTGTPLQNSLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNEEEQLLIIQR 1925
Query: 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
L VLR +LLRR K+E L K + V+ C MS Q + Y
Sbjct: 1926 ---LHKVLRPFLLRRLKKEVEAQLP-DKVEKVLKCDMSAFQAKMY 1966
Score = 340 (124.7 bits), Expect = 3.6e-55, Sum P(3) = 3.6e-55
Identities = 71/162 (43%), Positives = 108/162 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
++ GK L++L+ + G ++L+FS ++++ILE F K Y F RLDGST S+ R
Sbjct: 2022 IRYAGKFDLLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDER 2081
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
L++ FN+ S+ +F++STRAGGLGLNL +A+ V+IFD +WNP DLQAQDR+ R GQ
Sbjct: 2082 GHLLELFNAPNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQ 2141
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSN-IAVSGKLEKR 671
K+ V V RL++A S+EE + R +K++L I +G+ +
Sbjct: 2142 KQTVRVLRLVTAHSVEESILARANFKKELDKKIIQAGQFNNK 2183
Score = 42 (19.8 bits), Expect = 1.8e-22, Sum P(4) = 1.8e-22
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 459 QQISNHLELIKPNPRDEPDKQRKDAELASAVFGP-DIDLV 497
QQI N +++P P P K + + + P DI+ +
Sbjct: 1174 QQIINQTPVVEPEPPSIPIDPLKSLPMETLIPKPMDIEFM 1213
Score = 39 (18.8 bits), Expect = 3.6e-55, Sum P(3) = 3.6e-55
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 776 NDDIVNKQPGFQRKKEESIPQ 796
NDD N QP F + ++ PQ
Sbjct: 3104 NDDEPNPQPTFVTRPQQQ-PQ 3123
Score = 39 (18.8 bits), Expect = 7.2e-24, Sum P(3) = 7.2e-24
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 642 AGSLEELVYTRQVYKQQLSNI 662
A S+ + Y Q+Y Q S +
Sbjct: 2612 AASVNSMFYNAQIYNQSGSEV 2632
Score = 39 (18.8 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 180 FGKDESSDSTILKDNKVDKK 199
+G DE D L DNK D+K
Sbjct: 1556 YGDDE--DDIGLNDNKDDEK 1573
Score = 37 (18.1 bits), Expect = 1.8e-22, Sum P(4) = 1.8e-22
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 498 GGNAQNESFIGLSDVKSCGKM 518
GG +E IGL+D K K+
Sbjct: 1554 GGYGDDEDDIGLNDNKDDEKI 1574
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 342 (125.4 bits), Expect = 3.8e-55, Sum P(4) = 3.8e-55
Identities = 94/294 (31%), Positives = 147/294 (50%)
Query: 128 QVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSD 187
+VP + L E+Q G+ +L LY+ GIL D+MGLGKTI TI+ +A +
Sbjct: 772 KVPFLLKFPLREYQHIGLDWLVSLYEKNLNGILADEMGLGKTIMTISLIAYL-------- 823
Query: 188 STILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKL---EA 243
+ K G LI+ PSSV+ NWE+EF RW + YHG +RD + ++
Sbjct: 824 -AVQKG----VWGPHLIVVPSSVLFNWEMEFKRWCPGLKIFTYHGTSRDRKANRKGWSKS 878
Query: 244 CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303
V ITS+ I W +I+DEAH +KN K++ + L T R+ LTG
Sbjct: 879 NAFHVCITSYSMVMSDHLIFRRKKWVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTG 938
Query: 304 TIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363
T +QN +MEL++L ++ P + F++++ P+ G + + ++ L
Sbjct: 939 TPLQNNLMELWSLMHFLMPDIFQSHREFQDWFSNPVT-GMIEGGDD----VNEDIINRLH 993
Query: 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLIN 417
AVLR +LLRR K++ + M K ++V C+MS QK Y + Q ++
Sbjct: 994 AVLRPFLLRRLKKD-VEKQMPPKHTHIVPCSMSRRQKFLYEEFINSSSTQSTLS 1046
Score = 331 (121.6 bits), Expect = 3.8e-55, Sum P(4) = 3.8e-55
Identities = 64/163 (39%), Positives = 102/163 (62%)
Query: 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
CGK++ L L+ +G + L+F+ +MLDI E FL Y++ RLDGST + RQ L
Sbjct: 1378 CGKLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVL 1437
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
+ FN+ P +F++STR+GGLGLNL A+ V+ +D +WNP+ D QAQDR R GQ R V
Sbjct: 1438 TERFNTDPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREV 1497
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKRYFEGV 676
++R ++ ++EE + + K+QL + + +G+ +F+ +
Sbjct: 1498 NIYRFITQHTIEENILKKSNQKRQLDKMVIKAGEFTTDFFKNL 1540
Score = 60 (26.2 bits), Expect = 3.8e-55, Sum P(4) = 3.8e-55
Identities = 22/75 (29%), Positives = 33/75 (44%)
Query: 722 TNQGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAH-RNDDIV 780
T G+ G T S S + +ST +K +K S + + K L+ D IV N D
Sbjct: 2172 TVSGYSGSSTPSSSLSSSTSSISTSNKDKKKSSSSSSSSKKRLVPDDIIVTGGVANSDKS 2231
Query: 781 NKQ-PGFQRKKEESI 794
+ + F EES+
Sbjct: 2232 DAELEDFAGSLEESL 2246
Score = 41 (19.5 bits), Expect = 3.8e-55, Sum P(4) = 3.8e-55
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 448 FCLVLPCLVKLQQISNHLELIKPNPRDEP 476
F ++ L++L+++ NH +L + P P
Sbjct: 1050 FFSIINILMQLRKVCNHPDLFEIRPIVSP 1078
Score = 39 (18.8 bits), Expect = 7.7e-24, Sum P(4) = 7.7e-24
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 346 TAPERFIRI----ADERKQHLVAVLRKYLLRRTKEE 377
T E FIR RK + V+R +LL +T+EE
Sbjct: 516 TVSEEFIRNRRFKTRVRKVIVKEVIRHHLLIQTQEE 551
Score = 38 (18.4 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 611 PNWNPAQDLQAQDRSFRFGQKRHVIVF 637
P W+ +D D FG+ +I F
Sbjct: 2357 PPWSQQEDKLILDNVKNFGENWDLITF 2383
Score = 37 (18.1 bits), Expect = 9.2e-53, Sum P(4) = 9.2e-53
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 787 QRKKEESIPQDLSSRPPPIHSKRRN 811
++ K+E + R IHSK+ N
Sbjct: 2125 EKAKQEEERRAKEKRDQKIHSKKSN 2149
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 338 (124.0 bits), Expect = 3.9e-55, Sum P(3) = 3.9e-55
Identities = 66/161 (40%), Positives = 103/161 (63%)
Query: 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
CGK++ L L+ ++G ++L+F+ RMLD+LE+FL G+ + RLDGST RQ+L
Sbjct: 2042 CGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2101
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
++ FN+ F++STR+GG+G+NL A+ VV +D +WNP D QAQDR R GQ R V
Sbjct: 2102 MERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2161
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG-KLEKRYFE 674
++RL+S ++EE + + K+ L ++A+ G YF+
Sbjct: 2162 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFK 2202
Score = 336 (123.3 bits), Expect = 3.9e-55, Sum P(3) = 3.9e-55
Identities = 92/279 (32%), Positives = 147/279 (52%)
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
+P + +L E+Q G+ +L +Y+ K GIL D+MGLGKTIQTI+ LA + +
Sbjct: 617 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACE------ 670
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPNRDMILEK---LEAC 244
K N G LII P+SV+ NWE+E RW +F + Y+G ++ L++ +
Sbjct: 671 ---KGNW----GPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPN 723
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
V ITS+ NW +I+DEA +KN KS+ + + L ++ R+ LTGT
Sbjct: 724 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 783
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364
+QN +MEL++L ++ P + F+E++ PL G + + + +R L
Sbjct: 784 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GM-IEGSQEYNEGLVKR---LHK 838
Query: 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
VLR +LLRR K + + M K ++V+ C +S Q+ Y
Sbjct: 839 VLRPFLLRRVKVD-VEKQMPKKYEHVIRCRLSKRQRCLY 876
Score = 51 (23.0 bits), Expect = 3.9e-55, Sum P(3) = 3.9e-55
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 448 FCLVLPCLVKLQQISNHLELIKPNPRDEP 476
F V+ L++L+++ NH L P P P
Sbjct: 894 FMSVINILMQLRKVCNHPNLFDPRPVTSP 922
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 338 (124.0 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 66/161 (40%), Positives = 103/161 (63%)
Query: 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
CGK++ L L+ ++G ++L+F+ RMLD+LE+FL G+ + RLDGST RQ+L
Sbjct: 2053 CGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2112
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
++ FN+ F++STR+GG+G+NL A+ VV +D +WNP D QAQDR R GQ R V
Sbjct: 2113 MERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2172
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG-KLEKRYFE 674
++RL+S ++EE + + K+ L ++A+ G YF+
Sbjct: 2173 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFK 2213
Score = 336 (123.3 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 92/279 (32%), Positives = 147/279 (52%)
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
+P + +L E+Q G+ +L +Y+ K GIL D+MGLGKTIQTI+ LA + +
Sbjct: 618 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACE------ 671
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPNRDMILEK---LEAC 244
K N G LII P+SV+ NWE+E RW +F + Y+G ++ L++ +
Sbjct: 672 ---KGNW----GPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPN 724
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
V ITS+ NW +I+DEA +KN KS+ + + L ++ R+ LTGT
Sbjct: 725 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 784
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364
+QN +MEL++L ++ P + F+E++ PL G + + + +R L
Sbjct: 785 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GM-IEGSQEYNEGLVKR---LHK 839
Query: 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
VLR +LLRR K + + M K ++V+ C +S Q+ Y
Sbjct: 840 VLRPFLLRRVKVD-VEKQMPKKYEHVIRCRLSKRQRCLY 877
Score = 51 (23.0 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 448 FCLVLPCLVKLQQISNHLELIKPNPRDEP 476
F V+ L++L+++ NH L P P P
Sbjct: 895 FMSVINILMQLRKVCNHPNLFDPRPVTSP 923
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 356 (130.4 bits), Expect = 4.3e-55, Sum P(3) = 4.3e-55
Identities = 96/289 (33%), Positives = 153/289 (52%)
Query: 123 EYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGK 182
E + Q +N L E+Q +G+++L LY N GIL D+MGLGKTIQTI+ +
Sbjct: 759 EKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLV------ 812
Query: 183 DESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHG-PN-RDMILE 239
T L D K G LII P S + NW +EF +W+ V Y G P R ++
Sbjct: 813 ------TYLMDRK-KVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQN 865
Query: 240 KLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNR 298
++ A VL+T+++ ++L+++ W+ +I+DE HR+KN KL R
Sbjct: 866 QMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYR 925
Query: 299 IGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADE 357
+ LTGT +QNK+ EL+ L +++ P + F ++++ P G+++ E I
Sbjct: 926 LLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEET-ILII 984
Query: 358 RKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R+ H VLR +LLRR K+E + H + K + ++ C MS LQ+ Y+ +
Sbjct: 985 RRLH--KVLRPFLLRRLKKE-VEHQLPDKVEYIIKCDMSALQRVLYKHM 1030
Score = 295 (108.9 bits), Expect = 4.3e-55, Sum P(3) = 4.3e-55
Identities = 63/158 (39%), Positives = 97/158 (61%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GK L++++ + ++LLF + + I+E +L + + + RLDG+T + R L+
Sbjct: 1098 GKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELL 1157
Query: 576 DDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
FN+ S VFL+STRAGGLGLNL +A+ VVIFD +WNP QDLQAQDR+ R GQ+ V
Sbjct: 1158 RKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEV 1217
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V RL++ S+EE + YK + + +G +++
Sbjct: 1218 RVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQK 1255
Score = 62 (26.9 bits), Expect = 4.3e-55, Sum P(3) = 4.3e-55
Identities = 26/87 (29%), Positives = 38/87 (43%)
Query: 738 DSNTLLSTGSKTRKSSDPEMARTSKPLLE--DMGIVY--AHRNDDIVNKQPGFQRKKEES 793
D +T+L GS+ RK D + T K L+ D G + DD K+ + +KEES
Sbjct: 1348 DEDTILGRGSRQRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDSKRKRRKRKNRKEES 1407
Query: 794 IPQDLSSRPPPIHSKRRNLLDCADGKE 820
L + +RR LD K+
Sbjct: 1408 DDDSLI-----LKRRRRQNLDKRSKKQ 1429
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 339 (124.4 bits), Expect = 6.6e-55, Sum P(2) = 6.6e-55
Identities = 73/171 (42%), Positives = 111/171 (64%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM AL+KL+ +G ++L+FS R+LDILE + + +GY + RLDG TP R
Sbjct: 462 VSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 521
Query: 572 QSL------------VDDFNS-SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618
++L ++ FN+ + SK +F++STRAGGLG+NL SA+ V+++D +WNP D
Sbjct: 522 ENLFLHKHNLFSTEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVD 581
Query: 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
LQA DR+ R GQK+ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 582 LQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 632
Score = 317 (116.6 bits), Expect = 6.6e-55, Sum P(2) = 6.6e-55
Identities = 98/319 (30%), Positives = 163/319 (51%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 163 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 209
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRDM----ILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + V + G ++D+ I +++ +V +T
Sbjct: 210 NFPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG-DKDVRAAFIRDEMMPGEWDVCVT 268
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + +W +++DEAHR+KNEKSKL E K+ NR+ LTGT +QN +
Sbjct: 269 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 328
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + + F ++D + ++ + ER L AVL+ +LL
Sbjct: 329 ELWALLNFLLPDVFNSADDFDSWFDT-----KNCLGDQKLV----ER---LHAVLKPFLL 376
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLIN--KDLPCSCGSPLT 429
RR K + L KE + + +S +Q+ Y ++L + +I L + K + L
Sbjct: 377 RRIKTDVEKSLPPKKEIKI-YLGLSKMQREWYTKIL-MKDIDVLNSSGKMDKMRLLNILM 434
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 435 QLRKCCNHPYLFDGAEPGP 453
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 338 (124.0 bits), Expect = 6.7e-55, Sum P(2) = 6.7e-55
Identities = 97/288 (33%), Positives = 148/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EGV +L + N+ IL D+MGLGKTIQ+IAFL V+
Sbjct: 427 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYN-------------- 472
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
V G L+I P S I NWE EF+ W+ N +YHG +R MI + C
Sbjct: 473 VGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 532
Query: 245 GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
G + LIT+F+ L E+ W VI+DEAHRLKN KL + + +++ L
Sbjct: 533 GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLL 592
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADERKQ 360
TGT +QN + EL++L ++ P + F ++F D LK +E+ Q
Sbjct: 593 TGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD--LK--------------TEEQVQ 636
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L A+L+ +LRR KE+ +L K++ ++ ++++QK+ YR +L+
Sbjct: 637 KLQAILKPMMLRRLKEDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 683
Score = 327 (120.2 bits), Expect = 6.7e-55, Sum P(2) = 6.7e-55
Identities = 66/146 (45%), Positives = 96/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+S GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y + R+DG NLR
Sbjct: 746 VRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLR 805
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 806 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 865
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ + K
Sbjct: 866 SKAVKVYRLITRNSYEREMFDKASLK 891
Score = 39 (18.8 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 457 KLQQISNHLELIKPNPRDEPDKQRK 481
K +++ NH L P PR K+ K
Sbjct: 1132 KTKELQNHSGLSIPVPRGRKGKKVK 1156
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 336 (123.3 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 68/159 (42%), Positives = 104/159 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + + Y + RLDG TP + R
Sbjct: 478 VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER 537
Query: 572 QSLVDDFNSSPS-KQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q ++ +N S K VF++STRAGGLG+NL +A+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 538 QDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQ 597
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
+ V VFR ++ ++EE + R K +L +I + G+L
Sbjct: 598 TKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRL 636
Score = 320 (117.7 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 101/320 (31%), Positives = 157/320 (49%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L ++Q G+ +L LY+N GIL D+MGLGKT+QTI+ L +K +
Sbjct: 178 KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLG------------YMKHYR 225
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD---MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW T G + + L +V +T
Sbjct: 226 -NIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVT 284
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + NW +++DEAHR+KNEKSKL E KT NR+ LTGT +QN +
Sbjct: 285 SYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLH 344
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L +++ P + + F ++D G Q+L ER H+V LR +L
Sbjct: 345 ELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLV--ERL---------HMV--LRPFL 391
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPL 428
LRR K + L KE + + +S +Q+ Y R+L + +I L K + L
Sbjct: 392 LRRIKADVEKSLPPKKEVKI-YVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNIL 449
Query: 429 TQV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 450 MQLRKCCNHPYLFDGAEPGP 469
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 336 (123.3 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 68/159 (42%), Positives = 104/159 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + + Y + RLDG TP + R
Sbjct: 479 VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER 538
Query: 572 QSLVDDFNSSPS-KQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q ++ +N S K VF++STRAGGLG+NL +A+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 539 QESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQ 598
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
+ V VFR ++ ++EE + R K +L +I + G+L
Sbjct: 599 TKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRL 637
Score = 320 (117.7 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 101/320 (31%), Positives = 157/320 (49%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L ++Q G+ +L LY+N GIL D+MGLGKT+QTI+ L +K +
Sbjct: 179 KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLG------------YMKHYR 226
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD---MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW T G + + L +V +T
Sbjct: 227 -NIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVT 285
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + NW +++DEAHR+KNEKSKL E KT NR+ LTGT +QN +
Sbjct: 286 SYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLH 345
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L +++ P + + F ++D G Q+L ER H+V LR +L
Sbjct: 346 ELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLV--ERL---------HMV--LRPFL 392
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPL 428
LRR K + L KE + + +S +Q+ Y R+L + +I L K + L
Sbjct: 393 LRRIKADVEKSLPPKKEVKI-YVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNIL 450
Query: 429 TQV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 451 MQLRKCCNHPYLFDGAEPGP 470
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 336 (123.3 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 68/159 (42%), Positives = 104/159 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + + Y + RLDG TP + R
Sbjct: 479 VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER 538
Query: 572 QSLVDDFNSSPS-KQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q ++ +N S K VF++STRAGGLG+NL +A+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 539 QESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQ 598
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
+ V VFR ++ ++EE + R K +L +I + G+L
Sbjct: 599 TKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRL 637
Score = 320 (117.7 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 101/320 (31%), Positives = 157/320 (49%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L ++Q G+ +L LY+N GIL D+MGLGKT+QTI+ L +K +
Sbjct: 179 KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLG------------YMKHYR 226
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD---MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW T G + + L +V +T
Sbjct: 227 -NIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVT 285
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + NW +++DEAHR+KNEKSKL E KT NR+ LTGT +QN +
Sbjct: 286 SYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLH 345
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L +++ P + + F ++D G Q+L ER H+V LR +L
Sbjct: 346 ELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLV--ERL---------HMV--LRPFL 392
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPL 428
LRR K + L KE + + +S +Q+ Y R+L + +I L K + L
Sbjct: 393 LRRIKADVEKSLPPKKEVKI-YVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNIL 450
Query: 429 TQV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 451 MQLRKCCNHPYLFDGAEPGP 470
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 336 (123.3 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 68/159 (42%), Positives = 104/159 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + + Y + RLDG TP + R
Sbjct: 479 VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER 538
Query: 572 QSLVDDFNSSPS-KQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q ++ +N S K VF++STRAGGLG+NL +A+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 539 QDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQ 598
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
+ V VFR ++ ++EE + R K +L +I + G+L
Sbjct: 599 TKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRL 637
Score = 320 (117.7 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 101/320 (31%), Positives = 157/320 (49%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L ++Q G+ +L LY+N GIL D+MGLGKT+QTI+ L +K +
Sbjct: 179 KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLG------------YMKHYR 226
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD---MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW T G + + L +V +T
Sbjct: 227 -NIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVT 285
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + NW +++DEAHR+KNEKSKL E KT NR+ LTGT +QN +
Sbjct: 286 SYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLH 345
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L +++ P + + F ++D G Q+L ER H+V LR +L
Sbjct: 346 ELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLV--ERL---------HMV--LRPFL 392
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPL 428
LRR K + L KE + + +S +Q+ Y R+L + +I L K + L
Sbjct: 393 LRRIKADVEKSLPPKKEVKI-YVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNIL 450
Query: 429 TQV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 451 MQLRKCCNHPYLFDGAEPGP 470
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 336 (123.3 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 68/159 (42%), Positives = 104/159 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + + Y + RLDG TP + R
Sbjct: 479 VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER 538
Query: 572 QSLVDDFNSSPS-KQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q ++ +N S K VF++STRAGGLG+NL +A+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 539 QESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQ 598
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
+ V VFR ++ ++EE + R K +L +I + G+L
Sbjct: 599 TKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRL 637
Score = 320 (117.7 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 101/320 (31%), Positives = 157/320 (49%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L ++Q G+ +L LY+N GIL D+MGLGKT+QTI+ L +K +
Sbjct: 179 KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLG------------YMKHYR 226
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD---MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW T G + + L +V +T
Sbjct: 227 -NIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVT 285
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + NW +++DEAHR+KNEKSKL E KT NR+ LTGT +QN +
Sbjct: 286 SYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLH 345
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L +++ P + + F ++D G Q+L ER H+V LR +L
Sbjct: 346 ELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLV--ERL---------HMV--LRPFL 392
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPL 428
LRR K + L KE + + +S +Q+ Y R+L + +I L K + L
Sbjct: 393 LRRIKADVEKSLPPKKEVKI-YVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNIL 450
Query: 429 TQV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 451 MQLRKCCNHPYLFDGAEPGP 470
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 346 (126.9 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 79/233 (33%), Positives = 132/233 (56%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDL---VGGNAQNESFIG 508
L L L++I +H L+ ++ + D+ L G L + N + F
Sbjct: 667 LAALTILKKICDHPLLLTKRAAEDV-LEGMDSTLTQEEAGVAERLAMHIADNVDTDDFQT 725
Query: 509 LSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPS 568
+D SC K+ + L+ + +G ++L+FS + +ML++++ L GYSF R+DG+T +
Sbjct: 726 KNDSISC-KLSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKA 784
Query: 569 NLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRF 628
R V++F +FL++++ GGLGL L A+RV++ DP WNP+ D Q+ DR++R
Sbjct: 785 PDRLKTVEEFQEGHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 844
Query: 629 GQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKE 681
GQ + VIV+RL+++ ++EE +Y +QVYK L A K + RYF QD +E
Sbjct: 845 GQTKDVIVYRLMTSATVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQ-QDLRE 896
Score = 310 (114.2 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 97/330 (29%), Positives = 165/330 (50%)
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
+P I L HQREG+ +L+ L+ GGILGDDMGLGKT+Q +FLA +F
Sbjct: 369 LPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLAGLF-------- 420
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHGPN---RDMILEKLEAC 244
+K+ K+ L++ P +++ +W E + ++ Y+G + R+ L +
Sbjct: 421 ----HSKLIKRA--LVVAPKTLLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQ- 473
Query: 245 GVEVLITSFDSYRIHGSILS-----------EVN-WEIVIVDEAHRLKNEKSKLYMACLE 292
G +L+T++D R + L + N W+ +I+DE H +KN ++ + LE
Sbjct: 474 GKGILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLE 533
Query: 293 LKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFI 352
+ + +RI ++GT +QN + EL+ LF++ PG LG + F++ Y+ + G A +R
Sbjct: 534 IPSSHRIIISGTPIQNNLKELWALFNFSCPGLLGDKNWFKQNYEHYILRGTDKNATDREQ 593
Query: 353 RIADERKQHLVAVLRKYLLRRTKEETIGH----LMMGKEDN-VVFCTMSDLQKRAYRRLL 407
RI ++L ++ + LRR K E G + K+D VV+ ++ Q++ Y L
Sbjct: 594 RIGSTVAKNLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEAFL 653
Query: 408 QLPEIQCLINKDLPCSCGSPLTQVECCKRL 437
EI L GSPL + K++
Sbjct: 654 N-SEIV------LSAFDGSPLAALTILKKI 676
Score = 39 (18.8 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 234 RDMILEKLEACGVEVLITSFD--SYRIHGSILSEVNW---EIVIVDEA--HRLKNEKSKL 286
+D +ACGV+ + FD + S+LS+++ ++V A + +K+++ K
Sbjct: 164 KDSQSNDFDACGVKSQVDKFDFEDAKSSFSLLSDLSKSSPDVVTTYNAGVNSIKDKQGKS 223
Query: 287 YMACLELKT 295
A E +T
Sbjct: 224 GFAIREEQT 232
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 339 (124.4 bits), Expect = 8.7e-55, Sum P(2) = 8.7e-55
Identities = 93/277 (33%), Positives = 151/277 (54%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q +G++++ LY N GIL D+MGLGKTIQTIAF+ T L + K
Sbjct: 869 LKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFI------------TYLIEKK- 915
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHGPN--RDMILEKLEACGVEVLITSF 253
+++G LII P S + NW +EF +W+ I Y GP R + ++ + VL+T+F
Sbjct: 916 NQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIRSSNFNVLLTTF 975
Query: 254 DSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL-KTRNRIGLTGTIMQNKIME 312
+ +LS + W +I+DE HR+KN +SKL ++ R+ LTGT +QN + E
Sbjct: 976 EYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPE 1035
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKH--GQ-RLTAPERFIRIADERKQHLVAVLRKY 369
L+ L ++V P + + F E+++ P + GQ ++ E + +R L VLR +
Sbjct: 1036 LWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALLIIKR---LHKVLRPF 1092
Query: 370 LLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
L RR K++ L K + V+ C +S LQ + Y+++
Sbjct: 1093 LFRRLKKDVEKELP-DKVEKVIKCPLSGLQLKLYQQM 1128
Score = 322 (118.4 bits), Expect = 8.7e-55, Sum P(2) = 8.7e-55
Identities = 67/161 (41%), Positives = 102/161 (63%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ G K L+F +++ I+E +L K + + RLDGST S+ R
Sbjct: 1184 RAAGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRC 1243
Query: 573 SLVDDFNSSPSK-QVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
SL+ FN S +F++STRAGGLGLNL +A+ V+IFD +WNP QDLQAQDR+ R GQ
Sbjct: 1244 SLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQT 1303
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
+ V + RL++ S+EE + +R YK L + +GK + +
Sbjct: 1304 KEVRILRLITEKSIEENILSRAQYKLDLDGKVIQAGKFDNK 1344
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 338 (124.0 bits), Expect = 9.6e-55, Sum P(2) = 9.6e-55
Identities = 97/288 (33%), Positives = 148/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EGV +L + N+ IL D+MGLGKTIQ+IAFL V+
Sbjct: 763 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYN-------------- 808
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
V G L+I P S I NWE EF+ W+ N +YHG +R MI + C
Sbjct: 809 VGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 868
Query: 245 GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
G + LIT+F+ L E+ W VI+DEAHRLKN KL + + +++ L
Sbjct: 869 GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLL 928
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADERKQ 360
TGT +QN + EL++L ++ P + F ++F D LK +E+ Q
Sbjct: 929 TGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD--LK--------------TEEQVQ 972
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L A+L+ +LRR KE+ +L K++ ++ ++++QK+ YR +L+
Sbjct: 973 KLQAILKPMMLRRLKEDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 1019
Score = 327 (120.2 bits), Expect = 9.6e-55, Sum P(2) = 9.6e-55
Identities = 66/146 (45%), Positives = 96/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+S GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y + R+DG NLR
Sbjct: 1083 VRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLR 1142
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1143 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1202
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ + K
Sbjct: 1203 SKAVKVYRLITRNSYEREMFDKASLK 1228
Score = 39 (18.8 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 457 KLQQISNHLELIKPNPRDEPDKQRK 481
K +++ NH L P PR K+ K
Sbjct: 1469 KTKELQNHSGLSIPVPRGRKGKKVK 1493
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 338 (124.0 bits), Expect = 9.9e-55, Sum P(2) = 9.9e-55
Identities = 97/288 (33%), Positives = 148/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EGV +L + N+ IL D+MGLGKTIQ+IAFL V+
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYN-------------- 855
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
V G L+I P S I NWE EF+ W+ N +YHG +R MI + C
Sbjct: 856 VGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 915
Query: 245 GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
G + LIT+F+ L E+ W VI+DEAHRLKN KL + + +++ L
Sbjct: 916 GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLL 975
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADERKQ 360
TGT +QN + EL++L ++ P + F ++F D LK +E+ Q
Sbjct: 976 TGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD--LK--------------TEEQVQ 1019
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L A+L+ +LRR KE+ +L K++ ++ ++++QK+ YR +L+
Sbjct: 1020 KLQAILKPMMLRRLKEDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 1066
Score = 327 (120.2 bits), Expect = 9.9e-55, Sum P(2) = 9.9e-55
Identities = 66/146 (45%), Positives = 96/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+S GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y + R+DG NLR
Sbjct: 1130 VRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLR 1189
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1190 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1249
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ + K
Sbjct: 1250 SKAVKVYRLITRNSYEREMFDKASLK 1275
Score = 39 (18.8 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 457 KLQQISNHLELIKPNPRDEPDKQRK 481
K +++ NH L P PR K+ K
Sbjct: 1516 KTKELQNHSGLSIPVPRGRKGKKVK 1540
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 338 (124.0 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 97/288 (33%), Positives = 148/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EGV +L + N+ IL D+MGLGKTIQ+IAFL V+
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYN-------------- 855
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
V G L+I P S I NWE EF+ W+ N +YHG +R MI + C
Sbjct: 856 VGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 915
Query: 245 GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
G + LIT+F+ L E+ W VI+DEAHRLKN KL + + +++ L
Sbjct: 916 GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLL 975
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADERKQ 360
TGT +QN + EL++L ++ P + F ++F D LK +E+ Q
Sbjct: 976 TGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD--LK--------------TEEQVQ 1019
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L A+L+ +LRR KE+ +L K++ ++ ++++QK+ YR +L+
Sbjct: 1020 KLQAILKPMMLRRLKEDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 1066
Score = 327 (120.2 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 66/146 (45%), Positives = 96/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+S GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y + R+DG NLR
Sbjct: 1129 VRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLR 1188
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1189 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1248
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ + K
Sbjct: 1249 SKAVKVYRLITRNSYEREMFDKASLK 1274
Score = 39 (18.8 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 457 KLQQISNHLELIKPNPRDEPDKQRK 481
K +++ NH L P PR K+ K
Sbjct: 1515 KTKELQNHSGLSIPVPRGRKGKKVK 1539
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 338 (124.0 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 97/288 (33%), Positives = 148/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EGV +L + N+ IL D+MGLGKTIQ+IAFL V+
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYN-------------- 855
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
V G L+I P S I NWE EF+ W+ N +YHG +R MI + C
Sbjct: 856 VGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 915
Query: 245 GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
G + LIT+F+ L E+ W VI+DEAHRLKN KL + + +++ L
Sbjct: 916 GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLL 975
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADERKQ 360
TGT +QN + EL++L ++ P + F ++F D LK +E+ Q
Sbjct: 976 TGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD--LK--------------TEEQVQ 1019
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L A+L+ +LRR KE+ +L K++ ++ ++++QK+ YR +L+
Sbjct: 1020 KLQAILKPMMLRRLKEDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 1066
Score = 327 (120.2 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 66/146 (45%), Positives = 96/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+S GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y + R+DG NLR
Sbjct: 1129 VRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLR 1188
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1189 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1248
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ + K
Sbjct: 1249 SKAVKVYRLITRNSYEREMFDKASLK 1274
Score = 39 (18.8 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 457 KLQQISNHLELIKPNPRDEPDKQRK 481
K +++ NH L P PR K+ K
Sbjct: 1515 KTKELQNHSGLSIPVPRGRKGKKVK 1539
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 338 (124.0 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 97/288 (33%), Positives = 148/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EGV +L + N+ IL D+MGLGKTIQ+IAFL V+
Sbjct: 812 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYN-------------- 857
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
V G L+I P S I NWE EF+ W+ N +YHG +R MI + C
Sbjct: 858 VGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 917
Query: 245 GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
G + LIT+F+ L E+ W VI+DEAHRLKN KL + + +++ L
Sbjct: 918 GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLL 977
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADERKQ 360
TGT +QN + EL++L ++ P + F ++F D LK +E+ Q
Sbjct: 978 TGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD--LK--------------TEEQVQ 1021
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L A+L+ +LRR KE+ +L K++ ++ ++++QK+ YR +L+
Sbjct: 1022 KLQAILKPMMLRRLKEDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 1068
Score = 327 (120.2 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 66/146 (45%), Positives = 96/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+S GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y + R+DG NLR
Sbjct: 1131 VRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLR 1190
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1191 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1250
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ + K
Sbjct: 1251 SKAVKVYRLITRNSYEREMFDKASLK 1276
Score = 39 (18.8 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 457 KLQQISNHLELIKPNPRDEPDKQRK 481
K +++ NH L P PR K+ K
Sbjct: 1517 KTKELQNHSGLSIPVPRGRKGKKVK 1541
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 338 (124.0 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 97/288 (33%), Positives = 148/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EGV +L + N+ IL D+MGLGKTIQ+IAFL V+
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYN-------------- 855
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
V G L+I P S I NWE EF+ W+ N +YHG +R MI + C
Sbjct: 856 VGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 915
Query: 245 GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
G + LIT+F+ L E+ W VI+DEAHRLKN KL + + +++ L
Sbjct: 916 GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLL 975
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADERKQ 360
TGT +QN + EL++L ++ P + F ++F D LK +E+ Q
Sbjct: 976 TGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD--LK--------------TEEQVQ 1019
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L A+L+ +LRR KE+ +L K++ ++ ++++QK+ YR +L+
Sbjct: 1020 KLQAILKPMMLRRLKEDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 1066
Score = 327 (120.2 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 66/146 (45%), Positives = 96/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+S GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y + R+DG NLR
Sbjct: 1130 VRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLR 1189
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1190 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1249
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ + K
Sbjct: 1250 SKAVKVYRLITRNSYEREMFDKASLK 1275
Score = 39 (18.8 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 457 KLQQISNHLELIKPNPRDEPDKQRK 481
K +++ NH L P PR K+ K
Sbjct: 1516 KTKELQNHSGLSIPVPRGRKGKKVK 1540
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 338 (124.0 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 2 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 49
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 50 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 108
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 109 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 167
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 168 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 224
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 225 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 263
Score = 314 (115.6 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 311 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 365
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVI 608
+ +G+ + RLDG+T + R L+ FN S+ +FL+STRAGGLGLNL SA+ V+I
Sbjct: 366 DYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVII 425
Query: 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGK 667
FD +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 426 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM 485
Query: 668 LEKR 671
+++
Sbjct: 486 FDQK 489
Score = 45 (20.9 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 787 QRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLAR 838
Q+K+ + LS PP + K + ++D + +S + + L +R
Sbjct: 659 QKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR 710
Score = 39 (18.8 bits), Expect = 4.8e-54, Sum P(3) = 4.8e-54
Identities = 14/79 (17%), Positives = 33/79 (41%)
Query: 733 IVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEE 792
+ ++ + GS+ RK D + T K L+ + ++ V ++ +++K +
Sbjct: 576 LTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRD 635
Query: 793 SIPQDLSSRPPPIHSKRRN 811
S D P ++ R+
Sbjct: 636 S---DAGPSTPTTSTRSRD 651
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 363 (132.8 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 98/306 (32%), Positives = 159/306 (51%)
Query: 110 TGPFEPL--VLSKDGEYPIIQVPASINC-RLLEHQREGVKFLYKLYKNKHGGILGDDMGL 166
T P + +L+K +I+ P + +L E+Q G+++L LY GIL D+MGL
Sbjct: 594 TSPLQSTTTILAKKSNNLVIEQPDLMTGGKLKEYQVTGLEWLISLYTRNLNGILADEMGL 653
Query: 167 GKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FN 225
GKT+QTIAF++ ++ +++ + L++ P S I NW EF+RWS +
Sbjct: 654 GKTVQTIAFISFLY-------------ERMNVREPFLVVAPLSTISNWVSEFARWSPKLH 700
Query: 226 VSIYHGPN--RDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283
V +Y G R + V+ITSF+ L V+W +I+DE HR+KN+
Sbjct: 701 VIVYKGKQDERRETARTIPRNAFCVVITSFEYIIKDRKTLGRVHWIYIIIDEGHRIKNKN 760
Query: 284 SKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HG 342
SKL + + +RNR+ LTGT +QN + EL+ L +++ P + + F+ +++ P + G
Sbjct: 761 SKLSVQLRQYHSRNRLLLTGTPLQNDLGELWALLNFLLPTIFNSADTFQNWFNAPFQAKG 820
Query: 343 QRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRA 402
+ L + + H VLR +LLRR K + L K++ V+ C MS LQ
Sbjct: 821 KNLINVNEEESLIIINRLH--QVLRFFLLRRLKSDVESQLP-DKKEKVIKCNMSALQIAM 877
Query: 403 YRRLLQ 408
YR L++
Sbjct: 878 YRSLVE 883
Score = 295 (108.9 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 70/218 (32%), Positives = 120/218 (55%)
Query: 451 VLPCLVKLQQISNHLELIKPN--PRDEPDKQRKDAELASAVFG---PDIDLVGGNA---Q 502
V+ C + QI+ + L++ P D K+ + L F + + + +
Sbjct: 865 VIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSGRLKMKGFNNIVKQLQKICNHPYLFK 924
Query: 503 NESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRL 562
+E I +++ GK +++++ + ++L+F+ +++++E++ K ++F RL
Sbjct: 925 DEWDINEDLIRTSGKFDTMDQILTKMHASKHRVLIFTQMTEVINLMEEYFSLKEWTFLRL 984
Query: 563 DGSTPSNLRQSLVDDFNSSPSK-QVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQA 621
DGST R LV ++N S +F++ST AGGLG+NL +A+ V+IFD +WNP DLQA
Sbjct: 985 DGSTKPEERAHLVVEWNRPDSPFWIFVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQA 1044
Query: 622 QDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQL 659
QDR R GQ V VFRL+SA S+EE + R K ++
Sbjct: 1045 QDRCHRIGQTNSVSVFRLISANSIEEKILGRATDKLEI 1082
Score = 43 (20.2 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 468 IKPNPRDEPDKQRKDAE 484
I+PNP DE + K+ E
Sbjct: 1519 IRPNPEDEEKDKDKENE 1535
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 344 (126.2 bits), Expect = 1.3e-54, Sum P(4) = 1.3e-54
Identities = 74/177 (41%), Positives = 109/177 (61%)
Query: 500 NAQNESFIGLSD-----VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR 554
NA++E +G D +++ GK+ L+KL+ G ++L+FS VRMLDIL +L
Sbjct: 1044 NARDECELGAKDLLDSMIRASGKLVLLDKLLIRLKETGHRVLIFSQMVRMLDILADYLKG 1103
Query: 555 KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNW 613
+ + F RLDGS R +D FN+ S FL+ST+AGGLG+NL +A+ V+IFD +W
Sbjct: 1104 RSFQFQRLDGSMSREKRSQAMDRFNAVDSPDFCFLLSTKAGGLGINLSTADTVIIFDSDW 1163
Query: 614 NPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEK 670
NP DLQA+ R+ R GQK HV ++RL+S S+EE + R K L ++ + +EK
Sbjct: 1164 NPQNDLQAEARAHRIGQKNHVNIYRLVSKSSVEEDILERAKQKMVLDHLVIQ-TMEK 1219
Score = 338 (124.0 bits), Expect = 1.3e-54, Sum P(4) = 1.3e-54
Identities = 92/283 (32%), Positives = 153/283 (54%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q EG+ +L + N IL D+MGLGKTIQTI+FL+ +F N+
Sbjct: 755 LRDYQMEGLNWLVHSWMNNTNVILADEMGLGKTIQTISFLSYLF-------------NEQ 801
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGP--NRDMI-------LEKL--EAC 244
D KG L++ P S I+NW+ EF++W+ NV +Y G +RD+I +L +
Sbjct: 802 DIKGPFLVVVPLSTIENWQREFAKWAPAMNVIVYTGTGQSRDIIRLYEFYTTNRLGKKKL 861
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
VL+T++D + L + WE + VDEAHRLKN +S L+ T NR+ +TGT
Sbjct: 862 NFNVLLTTYDFILKDKNTLGTIKWEFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLVTGT 921
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364
+QN + EL+NL +++ P + + F++ Y + LK ++ L +
Sbjct: 922 PLQNSLKELWNLLNFLMPNKFTSLKDFQDQYSD-LKENDQIA--------------QLHS 966
Query: 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
VL+ +LLRR K++ + + K + ++ +S++QK+ Y+ +L
Sbjct: 967 VLKPHLLRRIKKD-VEKSLPPKTERILRVDLSNVQKKYYKWIL 1008
Score = 40 (19.1 bits), Expect = 1.3e-54, Sum P(4) = 1.3e-54
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 735 SSKDSNTLLSTGSKTRKSSDPEM 757
SS+ SN+ S S + SS P +
Sbjct: 1886 SSRSSNSSSSNNSNSSSSSKPAL 1908
Score = 38 (18.4 bits), Expect = 1.1e-23, Sum P(4) = 1.1e-23
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 175 FLAAVFGKDESSDSTILKDNKVDKK 199
F+ VF SSD ++K +KK
Sbjct: 424 FVNNVFSSSSSSDEDYSDNDKKNKK 448
Score = 37 (18.1 bits), Expect = 1.3e-54, Sum P(4) = 1.3e-54
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 665 SGKLEKRYFEG--VQDCKEFQGELFGICNLFRDLSDN 699
S + + +Y++ ++ C+++ + + FR LSD+
Sbjct: 1770 SDEEDDKYYDKNLLRKCQQYLSPIKELLENFRSLSDS 1806
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 338 (124.0 bits), Expect = 1.4e-54, Sum P(3) = 1.4e-54
Identities = 65/152 (42%), Positives = 98/152 (64%)
Query: 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
CGK++ L++L+ S G ++L+F+ ++LDILE+FL G+ + RLDG+T RQ L
Sbjct: 990 CGKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQIL 1049
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
+ FN+ VF++STR+GGLG+NL A+ V+ +D +WNP D QAQDRS R GQ R V
Sbjct: 1050 TERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDV 1109
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
++RL+S ++E + R K+ L I + G
Sbjct: 1110 HIYRLISEYTVESNMLRRANQKRMLDKIVIQG 1141
Score = 319 (117.4 bits), Expect = 1.4e-54, Sum P(3) = 1.4e-54
Identities = 99/293 (33%), Positives = 152/293 (51%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
IQVP L E+Q+ G+++L L+ + GIL D+MGLGKTIQTIA LA + +
Sbjct: 437 IQVPFLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACE---- 492
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEACG 245
K+N G LII P+SV+ NWE+EF ++ F + Y+G N EK
Sbjct: 493 -----KENW----GPHLIIVPTSVMLNWEMEFKKFLPGFKILTYYG-NPQERKEKRSGWY 542
Query: 246 V----EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
V ITS+ W+ +I+DEAH +KN +S+ + + L +R+ L
Sbjct: 543 KPDTWHVCITSYQLVLQDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLL 602
Query: 302 TGTIMQNKIMELYNLFDWVAPGSL-------GTREHFREFYDEPL----KHGQRLTAPER 350
TGT +QN ++EL++L ++ P + + F++++ +P+ + GQ + PE
Sbjct: 603 TGTPLQNNLVELWSLLYFLMPAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMN-PEA 661
Query: 351 FIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
+A K H VLR YLLRR K E + M K ++VV+C +S Q+ Y
Sbjct: 662 MNTVA---KLH--RVLRPYLLRRLKTE-VEKQMPAKYEHVVYCQLSKRQRFLY 708
Score = 48 (22.0 bits), Expect = 1.4e-54, Sum P(3) = 1.4e-54
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 448 FCLVLPCLVKLQQISNHLELIKPNP 472
F ++ CL++L+++ NH L + P
Sbjct: 726 FMSIINCLMQLRKVCNHPNLHEERP 750
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 336 (123.3 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 68/159 (42%), Positives = 104/159 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + + Y + RLDG TP + R
Sbjct: 478 VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER 537
Query: 572 QSLVDDFNSSPS-KQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q ++ +N S K VF++STRAGGLG+NL +A+ V+++D +WNP DLQA DR+ R GQ
Sbjct: 538 QDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQ 597
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
+ V VFR ++ ++EE + R K +L +I + G+L
Sbjct: 598 TKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRL 636
Score = 317 (116.6 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 100/320 (31%), Positives = 157/320 (49%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L ++Q G+ +L LY+N GIL D+MGLGKT+QTI+ L +K +
Sbjct: 178 KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLG------------YMKHYR 225
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD---MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF +W T G + + L +V +T
Sbjct: 226 -NIPGPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVT 284
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + NW +++DEAHR+KNEKSKL E KT NR+ LTGT +QN +
Sbjct: 285 SYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLH 344
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L +++ P + + F ++D G Q+L ER H+V LR +L
Sbjct: 345 ELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLV--ERL---------HMV--LRPFL 391
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPL 428
LRR K + L KE + + +S +Q+ Y R+L + +I L K + L
Sbjct: 392 LRRIKADVEKSLPPKKEVKI-YVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNIL 449
Query: 429 TQV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 450 MQLRKCCNHPYLFDGAEPGP 469
>SGD|S000003131 [details] [associations]
symbol:RAD54 "DNA-dependent ATPase that stimulates strand
exchange" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032079 "positive regulation
of endodeoxyribonuclease activity" evidence=IDA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IMP] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0030491 "heteroduplex formation"
evidence=IDA] [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 SGD:S000003131 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0006338 GO:GO:0004386 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0000722
GO:GO:0015616 GO:GO:0032392 GO:GO:0032079 HOGENOM:HOG000204521
GO:GO:0030491 KO:K10875 OMA:LSEYFAL OrthoDB:EOG4T1MVP EMBL:M63232
EMBL:Z72685 PIR:JH0440 RefSeq:NP_011352.1 ProteinModelPortal:P32863
SMR:P32863 DIP:DIP-509N IntAct:P32863 MINT:MINT-605745
STRING:P32863 EnsemblFungi:YGL163C GeneID:852713 KEGG:sce:YGL163C
CYGD:YGL163c NextBio:972079 Genevestigator:P32863
GermOnline:YGL163C Uniprot:P32863
Length = 898
Score = 339 (124.4 bits), Expect = 1.8e-54, Sum P(3) = 1.8e-54
Identities = 86/236 (36%), Positives = 130/236 (55%)
Query: 458 LQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGK 517
L+++ NH L+ N DE D + D EL D ++ G A++ K K
Sbjct: 611 LKKLCNHPNLL--NFEDEFDDE-DDLELPD-----DYNMPGSKARDVQ------TKYSAK 656
Query: 518 MRALEKLMYSWASKGD-KILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVD 576
LE+ ++ ++ D KI+L S + LD++EK K YS RLDG+ N RQ LVD
Sbjct: 657 FSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVD 716
Query: 577 DFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635
FN ++ +FL+S++AGG G+NL+ ANR+++ DP+WNPA D QA R +R GQK+
Sbjct: 717 RFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCF 776
Query: 636 VFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYFEGVQDCKEFQGELFGIC 690
++R +S G++EE ++ RQ K LS+ V K + +R F + FQ IC
Sbjct: 777 IYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNLRQLFQKNENTIC 832
Score = 296 (109.3 bits), Expect = 1.8e-54, Sum P(3) = 1.8e-54
Identities = 86/304 (28%), Positives = 150/304 (49%)
Query: 153 KNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQ 212
+ +G I+ D+MGLGKT+Q IA + + + I DK +I+CPSS++
Sbjct: 326 RGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLI------DK---CIIVCPSSLVN 376
Query: 213 NWEIEFSRW---STFNVSIYHGPNRDM------ILEKLEACG-------VE-VLITSFDS 255
NW E +W +T G M + + + A V+ VLI S+++
Sbjct: 377 NWANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYET 436
Query: 256 YRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYN 315
R + L N +++ DE HRLKN S + A + R+ L+GT +QN + E +
Sbjct: 437 LRRNVDQLKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFA 496
Query: 316 LFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTK 375
L + PG LG+R FR+ ++ P+ G+ A ++ I + + Q L ++ K+++RRT
Sbjct: 497 LLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRRTN 556
Query: 376 EETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCK 435
+ +L K ++V+F + LQ Y +L++ E++ ++ K + S PL + K
Sbjct: 557 DILAKYLPC-KYEHVIFVNLKPLQNELYNKLIKSREVKKVV-KGVGGS--QPLRAIGILK 612
Query: 436 RLDN 439
+L N
Sbjct: 613 KLCN 616
Score = 61 (26.5 bits), Expect = 1.8e-54, Sum P(3) = 1.8e-54
Identities = 24/101 (23%), Positives = 42/101 (41%)
Query: 59 YNFSLPQQNPETRRE-KAPVEKSNVFDDXXXXXXXXXXXFGRHQLGQFQFDHTGPFEPLV 117
++ S+ + E+++ K+ EK N+ + GRH P L+
Sbjct: 184 HDTSMDNKEEESKKMIKSTQEKDNINKEKNSQEERPTQRIGRHPALMTNGVRNKPLRELL 243
Query: 118 ----LSKDGEYPIIQVPASINCRLLE----HQREGVKFLYK 150
S + + VP I+ +L + HQ EGV+FLY+
Sbjct: 244 GDSENSAENKKKFASVPVVIDPKLAKILRPHQVEGVRFLYR 284
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 326 (119.8 bits), Expect = 2.0e-54, Sum P(2) = 2.0e-54
Identities = 85/228 (37%), Positives = 124/228 (54%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPD---IDLVGGNAQNESFIG 508
L + L+++ NH +L+ D P+ D E S F PD + GG+A I
Sbjct: 551 LKAIGMLKKLCNHPDLL-----DLPE----DVE-GSEEFIPDDYQSSIAGGSASRNREI- 599
Query: 509 LSDVKSCGKMRALEKLMYSWASK-GDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTP 567
GK LE+ + + DKI+L S + LD++EK K Y RLDG+
Sbjct: 600 --QTWFSGKFLILERFLQKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGTMN 657
Query: 568 SNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSF 626
N RQ LVD FN + +FL+S++AGG G+NL+ ANR+V+ DP+WNPA D QA R +
Sbjct: 658 INKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQALARVW 717
Query: 627 RFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYF 673
R GQK+ ++R +S G++EE ++ RQ K LS+ V K + +R F
Sbjct: 718 RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDEKEDVERLF 765
Score = 323 (118.8 bits), Expect = 2.0e-54, Sum P(2) = 2.0e-54
Identities = 104/349 (29%), Positives = 170/349 (48%)
Query: 110 TGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYK-----LYKNKHGGILGDDM 164
T P E L SK + P++ P L HQ GVKFLY+ + G I+ D+M
Sbjct: 232 TNPEEKL--SKYPDVPVVIDPKLAKI-LRPHQIAGVKFLYRCTAGLIDARAKGCIMADEM 288
Query: 165 GLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW--- 221
GLGKT+Q + + + + TI K +I+CPSS+++NW E +W
Sbjct: 289 GLGKTLQCLTLMWTLLRQSPRGKRTIEK---------CIIVCPSSLVRNWANEIVKWLGE 339
Query: 222 ---STFNVSIYHGPNRDM--ILEKLE-ACGVE----VLITSFDSYRIHGSILSEVNWEIV 271
+ V N ++ L++ A G VLI S+++ R + L+ ++
Sbjct: 340 GALTPLAVDGKSTKNSELGTALQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGTEVGLM 399
Query: 272 IVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHF 331
+ DE HRLKN S + A L+ R+ L+GT +QN + E ++L ++ PG LGTR F
Sbjct: 400 LADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEF 459
Query: 332 REFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVV 391
++ Y+ + G+ TA + D++ L ++ K+++RRT + +L + K + V+
Sbjct: 460 KKNYENAILKGRDSTASDEEREKGDKKLNELSQMVSKFIIRRTNDILSKYLPI-KYEYVL 518
Query: 392 FCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGS-PLTQVECCKRLDN 439
F +S +QK Y + PEI+ L+ GS PL + K+L N
Sbjct: 519 FTGLSPMQKDIYNHFITSPEIKKLMK-----GTGSQPLKAIGMLKKLCN 562
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 326 (119.8 bits), Expect = 2.0e-54, Sum P(2) = 2.0e-54
Identities = 85/228 (37%), Positives = 124/228 (54%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPD---IDLVGGNAQNESFIG 508
L + L+++ NH +L+ D P+ D E S F PD + GG+A I
Sbjct: 551 LKAIGMLKKLCNHPDLL-----DLPE----DVE-GSEEFIPDDYQSSIAGGSASRNREI- 599
Query: 509 LSDVKSCGKMRALEKLMYSWASK-GDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTP 567
GK LE+ + + DKI+L S + LD++EK K Y RLDG+
Sbjct: 600 --QTWFSGKFLILERFLQKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGTMN 657
Query: 568 SNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSF 626
N RQ LVD FN + +FL+S++AGG G+NL+ ANR+V+ DP+WNPA D QA R +
Sbjct: 658 INKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQALARVW 717
Query: 627 RFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYF 673
R GQK+ ++R +S G++EE ++ RQ K LS+ V K + +R F
Sbjct: 718 RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDEKEDVERLF 765
Score = 323 (118.8 bits), Expect = 2.0e-54, Sum P(2) = 2.0e-54
Identities = 104/349 (29%), Positives = 170/349 (48%)
Query: 110 TGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYK-----LYKNKHGGILGDDM 164
T P E L SK + P++ P L HQ GVKFLY+ + G I+ D+M
Sbjct: 232 TNPEEKL--SKYPDVPVVIDPKLAKI-LRPHQIAGVKFLYRCTAGLIDARAKGCIMADEM 288
Query: 165 GLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW--- 221
GLGKT+Q + + + + TI K +I+CPSS+++NW E +W
Sbjct: 289 GLGKTLQCLTLMWTLLRQSPRGKRTIEK---------CIIVCPSSLVRNWANEIVKWLGE 339
Query: 222 ---STFNVSIYHGPNRDM--ILEKLE-ACGVE----VLITSFDSYRIHGSILSEVNWEIV 271
+ V N ++ L++ A G VLI S+++ R + L+ ++
Sbjct: 340 GALTPLAVDGKSTKNSELGTALQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGTEVGLM 399
Query: 272 IVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHF 331
+ DE HRLKN S + A L+ R+ L+GT +QN + E ++L ++ PG LGTR F
Sbjct: 400 LADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEF 459
Query: 332 REFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVV 391
++ Y+ + G+ TA + D++ L ++ K+++RRT + +L + K + V+
Sbjct: 460 KKNYENAILKGRDSTASDEEREKGDKKLNELSQMVSKFIIRRTNDILSKYLPI-KYEYVL 518
Query: 392 FCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGS-PLTQVECCKRLDN 439
F +S +QK Y + PEI+ L+ GS PL + K+L N
Sbjct: 519 FTGLSPMQKDIYNHFITSPEIKKLMK-----GTGSQPLKAIGMLKKLCN 562
>GENEDB_PFALCIPARUM|PF08_0126 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54,
putative" species:5833 "Plasmodium falciparum" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 376 (137.4 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 116/340 (34%), Positives = 176/340 (51%)
Query: 114 EPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKN----KHGG-ILGDDMGLGK 168
EPL+L KD E I+V + L EHQREGV+F+++ N K G IL DDMGLGK
Sbjct: 111 EPLILYKD-ENDKIEVDPILAQYLREHQREGVQFVFECLMNIKDDKISGCILADDMGLGK 169
Query: 169 TIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYV---LIICPSSVIQNWEIEFSRW--ST 223
T+Q+I L T+LK KK V LI+CP+S+I NW E S+W +
Sbjct: 170 TLQSITVLY-----------TLLKQG-FHKKCAVRRCLILCPASLINNWNDEISKWIPNR 217
Query: 224 FNVSIYHGPNRDMILEKLEACGVE----VLITSFDSYRIHGSILSEVNWEIVIVDEAHRL 279
NV+ + ++ I+ KLE + VLI S++ +RI+ L + + +++I DEAHRL
Sbjct: 218 CNVTCVNDNAKEKIVSKLEGFKYDIQSTVLICSYECFRINNEFLDKSSIDMIICDEAHRL 277
Query: 280 KNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPL 339
KN+K+K Y + L + R+ L+GT +QN + E Y L P FR+ + P+
Sbjct: 278 KNDKTKTYTSIYNLTAKKRLLLSGTPIQNDLGEFYALISLCNPDLFDDINLFRKKFANPI 337
Query: 340 KHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQ 399
G+ A E+ IA ER L + K++LRRT + ++ K +F ++ +Q
Sbjct: 338 LIGRDKDATEKEQEIASERLTELSNITNKFILRRTNN-LLSKVLPVKYLINIFIKLNPIQ 396
Query: 400 KRAY------RRLLQLP----EIQCLIN-KDLPCSCGSPL 428
+ Y +++L+ ++ LIN K L C PL
Sbjct: 397 EALYVLFLKDKKILKNDNTNNKVNVLINIKKLEKICNHPL 436
Score = 283 (104.7 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 54/133 (40%), Positives = 84/133 (63%)
Query: 533 DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTR 592
DK+++ S + LD +E Y F RLDG R +++DF S +FL+S++
Sbjct: 628 DKVVIVSNYTQTLDYMEILCKENMYKFVRLDGGINIKKRHKVINDFTHSADIFIFLLSSK 687
Query: 593 AGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTR 652
+GG G+NL+S+NR+++ DP+WNPA D QA R +R GQK+ ++RL G+++E VY R
Sbjct: 688 SGGCGINLISSNRLILLDPDWNPANDKQALARVWREGQKKICYIYRLFCTGTIDEKVYQR 747
Query: 653 QVYKQQLSNIAVS 665
Q+ K LSN+ V+
Sbjct: 748 QISKDGLSNMIVT 760
Score = 41 (19.5 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 26/117 (22%), Positives = 50/117 (42%)
Query: 721 CTNQGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEM-ARTSKPLLEDMGIVYAH-RNDD 778
C + ++ +I S+ ++NT +T + T ++ + S D I + + ++
Sbjct: 1106 CLKEEKSNIKGNIKSNTNNNTNNNTNNITNNITNNNINGSASTSTRHDNNIENNNMKKEE 1165
Query: 779 IVN--KQPGFQRKKEESIP--QDLSSRPPPIHSKRRNLLDCA----DGKESLASSKD 827
N + K EE I +D S+ + R+L++ D KESL S+D
Sbjct: 1166 EANYGNNSHNKNKNEEKIKNGKDEPSKRITRNMSHRSLVELLSQDEDSKESLTMSED 1222
>UNIPROTKB|Q8IAN4 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 376 (137.4 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 116/340 (34%), Positives = 176/340 (51%)
Query: 114 EPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKN----KHGG-ILGDDMGLGK 168
EPL+L KD E I+V + L EHQREGV+F+++ N K G IL DDMGLGK
Sbjct: 111 EPLILYKD-ENDKIEVDPILAQYLREHQREGVQFVFECLMNIKDDKISGCILADDMGLGK 169
Query: 169 TIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYV---LIICPSSVIQNWEIEFSRW--ST 223
T+Q+I L T+LK KK V LI+CP+S+I NW E S+W +
Sbjct: 170 TLQSITVLY-----------TLLKQG-FHKKCAVRRCLILCPASLINNWNDEISKWIPNR 217
Query: 224 FNVSIYHGPNRDMILEKLEACGVE----VLITSFDSYRIHGSILSEVNWEIVIVDEAHRL 279
NV+ + ++ I+ KLE + VLI S++ +RI+ L + + +++I DEAHRL
Sbjct: 218 CNVTCVNDNAKEKIVSKLEGFKYDIQSTVLICSYECFRINNEFLDKSSIDMIICDEAHRL 277
Query: 280 KNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPL 339
KN+K+K Y + L + R+ L+GT +QN + E Y L P FR+ + P+
Sbjct: 278 KNDKTKTYTSIYNLTAKKRLLLSGTPIQNDLGEFYALISLCNPDLFDDINLFRKKFANPI 337
Query: 340 KHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQ 399
G+ A E+ IA ER L + K++LRRT + ++ K +F ++ +Q
Sbjct: 338 LIGRDKDATEKEQEIASERLTELSNITNKFILRRTNN-LLSKVLPVKYLINIFIKLNPIQ 396
Query: 400 KRAY------RRLLQLP----EIQCLIN-KDLPCSCGSPL 428
+ Y +++L+ ++ LIN K L C PL
Sbjct: 397 EALYVLFLKDKKILKNDNTNNKVNVLINIKKLEKICNHPL 436
Score = 283 (104.7 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 54/133 (40%), Positives = 84/133 (63%)
Query: 533 DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTR 592
DK+++ S + LD +E Y F RLDG R +++DF S +FL+S++
Sbjct: 628 DKVVIVSNYTQTLDYMEILCKENMYKFVRLDGGINIKKRHKVINDFTHSADIFIFLLSSK 687
Query: 593 AGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTR 652
+GG G+NL+S+NR+++ DP+WNPA D QA R +R GQK+ ++RL G+++E VY R
Sbjct: 688 SGGCGINLISSNRLILLDPDWNPANDKQALARVWREGQKKICYIYRLFCTGTIDEKVYQR 747
Query: 653 QVYKQQLSNIAVS 665
Q+ K LSN+ V+
Sbjct: 748 QISKDGLSNMIVT 760
Score = 41 (19.5 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 26/117 (22%), Positives = 50/117 (42%)
Query: 721 CTNQGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEM-ARTSKPLLEDMGIVYAH-RNDD 778
C + ++ +I S+ ++NT +T + T ++ + S D I + + ++
Sbjct: 1106 CLKEEKSNIKGNIKSNTNNNTNNNTNNITNNITNNNINGSASTSTRHDNNIENNNMKKEE 1165
Query: 779 IVN--KQPGFQRKKEESIP--QDLSSRPPPIHSKRRNLLDCA----DGKESLASSKD 827
N + K EE I +D S+ + R+L++ D KESL S+D
Sbjct: 1166 EANYGNNSHNKNKNEEKIKNGKDEPSKRITRNMSHRSLVELLSQDEDSKESLTMSED 1222
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 338 (124.0 bits), Expect = 2.3e-54, Sum P(3) = 2.3e-54
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 83 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 130
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 131 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 189
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 190 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 248
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 249 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 305
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 306 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 344
Score = 314 (115.6 bits), Expect = 2.3e-54, Sum P(3) = 2.3e-54
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 392 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 446
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVI 608
+ +G+ + RLDG+T + R L+ FN S+ +FL+STRAGGLGLNL SA+ V+I
Sbjct: 447 DYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVII 506
Query: 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGK 667
FD +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 507 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM 566
Query: 668 LEKR 671
+++
Sbjct: 567 FDQK 570
Score = 45 (20.9 bits), Expect = 2.3e-54, Sum P(3) = 2.3e-54
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 787 QRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLAR 838
Q+K+ + LS PP + K + ++D + +S + + L +R
Sbjct: 773 QKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR 824
Score = 39 (18.8 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 14/79 (17%), Positives = 33/79 (41%)
Query: 733 IVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEE 792
+ ++ + GS+ RK D + T K L+ + ++ V ++ +++K +
Sbjct: 690 LTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRD 749
Query: 793 SIPQDLSSRPPPIHSKRRN 811
S D P ++ R+
Sbjct: 750 S---DAGPSTPTTSTRSRD 765
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 342 (125.4 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 69/150 (46%), Positives = 100/150 (66%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GK+ ALEKL+ +G+K LLF+ ++MLDILE FL YSF RLDGST RQ +V
Sbjct: 1768 GKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIV 1827
Query: 576 DDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635
FN+ S +F+ STR+G +G+NL +AN V+ +D +WNP+ D QA DR R GQ + V
Sbjct: 1828 TKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVH 1887
Query: 636 VFRLLSAGSLEELVYTRQVYKQQLSNIAVS 665
VFR + ++EE ++ +Q+ K++L NI ++
Sbjct: 1888 VFRFVCEYTVEENIWKKQLQKRKLDNICIN 1917
Score = 317 (116.6 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 85/299 (28%), Positives = 149/299 (49%)
Query: 123 EYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGK 182
E + ++P I L ++Q G+ +L LYKN GIL D+MGLGKT+Q I+ L+ +
Sbjct: 648 EKHLTKIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYL--- 704
Query: 183 DESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKL 241
+ I G L+I P+S++ NWEIE R+ F + Y+G + +++
Sbjct: 705 --AYYFNIW--------GPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNERYKKRV 754
Query: 242 ---EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNR 298
+ I+S+ + + W+ +I+DEAH +KN +K + L LK N
Sbjct: 755 GWFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNC 814
Query: 299 IGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADER 358
+ +TGT +QN + EL++L ++ P + F+E++ +PL L + I + E
Sbjct: 815 LLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLN----LAIEKSKIHHSKEL 870
Query: 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLIN 417
L V+R Y+LRR K+ + M K ++++ C ++ Q+ Y + +Q +N
Sbjct: 871 IDRLHTVIRPYILRRLKKN-VEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLN 928
Score = 49 (22.3 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 308 NKIMELYN------LFDWVAPGSLGTREHFREFYDEPLKH 341
N I ELY+ L+D L H E YD P+ H
Sbjct: 1033 NHISELYDNNHISELYDNNHISELYDNNHISELYDNPMSH 1072
Score = 42 (19.8 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 151 LYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
LYK K G L + LG I ++ K S+++T +K+ K
Sbjct: 1422 LYKMKEEGTLTNQQSLGD-INN----KHIYHKSTSNENTHMKNRK 1461
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 342 (125.4 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 69/150 (46%), Positives = 100/150 (66%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GK+ ALEKL+ +G+K LLF+ ++MLDILE FL YSF RLDGST RQ +V
Sbjct: 1768 GKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIV 1827
Query: 576 DDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635
FN+ S +F+ STR+G +G+NL +AN V+ +D +WNP+ D QA DR R GQ + V
Sbjct: 1828 TKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVH 1887
Query: 636 VFRLLSAGSLEELVYTRQVYKQQLSNIAVS 665
VFR + ++EE ++ +Q+ K++L NI ++
Sbjct: 1888 VFRFVCEYTVEENIWKKQLQKRKLDNICIN 1917
Score = 317 (116.6 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 85/299 (28%), Positives = 149/299 (49%)
Query: 123 EYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGK 182
E + ++P I L ++Q G+ +L LYKN GIL D+MGLGKT+Q I+ L+ +
Sbjct: 648 EKHLTKIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYL--- 704
Query: 183 DESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKL 241
+ I G L+I P+S++ NWEIE R+ F + Y+G + +++
Sbjct: 705 --AYYFNIW--------GPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNERYKKRV 754
Query: 242 ---EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNR 298
+ I+S+ + + W+ +I+DEAH +KN +K + L LK N
Sbjct: 755 GWFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNC 814
Query: 299 IGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADER 358
+ +TGT +QN + EL++L ++ P + F+E++ +PL L + I + E
Sbjct: 815 LLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLN----LAIEKSKIHHSKEL 870
Query: 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLIN 417
L V+R Y+LRR K+ + M K ++++ C ++ Q+ Y + +Q +N
Sbjct: 871 IDRLHTVIRPYILRRLKKN-VEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLN 928
Score = 49 (22.3 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 308 NKIMELYN------LFDWVAPGSLGTREHFREFYDEPLKH 341
N I ELY+ L+D L H E YD P+ H
Sbjct: 1033 NHISELYDNNHISELYDNNHISELYDNNHISELYDNPMSH 1072
Score = 42 (19.8 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 151 LYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
LYK K G L + LG I ++ K S+++T +K+ K
Sbjct: 1422 LYKMKEEGTLTNQQSLGD-INN----KHIYHKSTSNENTHMKNRK 1461
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 331 (121.6 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 70/164 (42%), Positives = 103/164 (62%)
Query: 504 ESF-IGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRL 562
E F IG +++ GK+ L+KL+ SKG ++LLFS +MLDIL+ +L +GYS+ R+
Sbjct: 336 EPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERV 395
Query: 563 DGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQ 622
DGS R + +F P FL+STRAGG+G+NL +A+ V+ FD ++NP DLQA
Sbjct: 396 DGSVRGEERHLAIKNFGQQPIF-TFLLSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQAA 454
Query: 623 DRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
R+ R GQ + V V RL+ ++EE+VY + K QL+N + G
Sbjct: 455 ARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEG 498
Score = 317 (116.6 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 103/318 (32%), Positives = 158/318 (49%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L +Q +GV +L + + ++G ILGD+MGLGKT QTIA + G+ L D
Sbjct: 48 LRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGR--------LND--- 96
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPN--RDMILEKL-EACGVEVLITS 252
+G LI+CP SV+ NW+ E R++ + Y G R + + L + VL+T+
Sbjct: 97 --EGPFLILCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDLKQESRFHVLLTT 154
Query: 253 FDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIME 312
++ S L W +++VDEAHRLKN+ S L+ E + LTGT +QN + E
Sbjct: 155 YEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQE 214
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLR 372
LY+L +V P L ++E +F QR E+ A E L +L+ +LLR
Sbjct: 215 LYSLLSFVEP-DLFSKEQVEDFV-------QRYQDIEKESESASE----LYKLLQPFLLR 262
Query: 373 RTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLP-CSCGSPLTQV 431
R K E L K + V++ MS LQK+ Y+ +L + ++ N+ + L+Q+
Sbjct: 263 RVKAEVATELPR-KTEVVIYHGMSALQKKYYKAIL-MKDLDAFENETAKKVKLQNVLSQL 320
Query: 432 ECCKRLDNL-DGCDSCPF 448
C L DG + PF
Sbjct: 321 RKCVDHPYLFDGVEPEPF 338
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 338 (124.0 bits), Expect = 3.4e-54, Sum P(2) = 3.4e-54
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 549 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 596
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 597 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 655
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 656 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 714
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 715 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 771
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 772 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 810
Score = 314 (115.6 bits), Expect = 3.4e-54, Sum P(2) = 3.4e-54
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 858 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 912
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVI 608
+ +G+ + RLDG+T + R L+ FN S+ +FL+STRAGGLGLNL SA+ V+I
Sbjct: 913 DYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVII 972
Query: 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGK 667
FD +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 973 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM 1032
Query: 668 LEKR 671
+++
Sbjct: 1033 FDQK 1036
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 335 (123.0 bits), Expect = 4.7e-54, Sum P(2) = 4.7e-54
Identities = 96/288 (33%), Positives = 147/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EGV +L + N+ IL D+MGLGKTIQ+I FL V+
Sbjct: 754 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITFLQEVYN-------------- 799
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
V +G L+I P S I NWE EF W+ N +YHG +R MI + C
Sbjct: 800 VGIRGPFLVIAPLSTITNWEREFGSWTQMNTIVYHGSLASRQMIQQYEMYCKDSKGRLIP 859
Query: 245 GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
G + LIT+F+ L E+ W VI+DEAHRLKN KL + + +++ L
Sbjct: 860 GAYKFDALITTFEMVLSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLL 919
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADERKQ 360
TGT +QN + EL++L ++ P + F ++F D LK +E+ Q
Sbjct: 920 TGTPLQNTVEELFSLLHFLEPTQFSSEAEFLKDFGD--LK--------------TEEQVQ 963
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L A+L+ +LRR KE+ +L K++ ++ ++++QK+ YR +L+
Sbjct: 964 KLQAILKPMMLRRLKEDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 1010
Score = 322 (118.4 bits), Expect = 4.7e-54, Sum P(2) = 4.7e-54
Identities = 64/146 (43%), Positives = 96/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+S GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y + R+DG N+R
Sbjct: 1073 VRSSGKLVLIDKLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMR 1132
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1133 QAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1192
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V ++RL++ S E ++ + K
Sbjct: 1193 SKAVKIYRLITRNSYEREMFDKASLK 1218
Score = 42 (19.8 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 457 KLQQISNHLELIKPNPRDEPDKQRK 481
K +Q+ NH L P PR K+ K
Sbjct: 1459 KTKQLQNHSGLSIPVPRGRKGKKVK 1483
Score = 39 (18.8 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 455 LVKLQQISNHLELIKPNPRDEPDKQRKDAELA 486
L+ Q S E +K + DK+RK E A
Sbjct: 1691 LITAYQRSYKREQLKLEAEERGDKRRKRCEAA 1722
Score = 39 (18.8 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 458 LQQISNHLELIKPNPRDEPDKQRK 481
+ ++ N EL NP D+ +RK
Sbjct: 419 IPRVLNEDELPSVNPEDDDGSRRK 442
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 361 (132.1 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 84/198 (42%), Positives = 120/198 (60%)
Query: 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSR 561
++E GL + + GKM L+KL+ G ++L+FS VRMLDIL +L +GY R
Sbjct: 678 RDEVLKGL--IMNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQR 735
Query: 562 LDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
LDG+ P+ +R++ +D FN+ S VFL+STRAGGLG+NL++A+ V+IFD +WNP DLQ
Sbjct: 736 LDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQ 795
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQD-- 678
A R+ R GQK HV+V+RLLS ++EE V R K L +S + + D
Sbjct: 796 AMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAIISLGVTDKQKNSKNDKF 855
Query: 679 -CKEFQGEL-FGICNLFR 694
+E L FG N+F+
Sbjct: 856 SAEELSAILKFGASNMFK 873
Score = 300 (110.7 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 92/291 (31%), Positives = 145/291 (49%)
Query: 128 QVPASINC-RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
Q P+ I L + Q GV ++ L+ GIL D+MGLGKT+QT+AFL+ +
Sbjct: 365 QQPSYITGGELRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLA------ 418
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHG--PNRDMILE-KLE 242
+ + + G L++ P S + W+ + W S N Y G +R +I + +
Sbjct: 419 -------HSLRQHGPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFY 471
Query: 243 ACGVE-----VLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRN 297
G + +L+T+++ S+LS + W+ + +DEAHRLKN +S LY A + K N
Sbjct: 472 VDGTQKIKFNLLLTTYEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSN 531
Query: 298 RIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFR-EFYDEPLKHGQRLTAPERFIRIAD 356
R+ +TGT +QN I EL L D++ PG RE E DE E +IR
Sbjct: 532 RLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEE---------QEAYIRSLQ 582
Query: 357 ERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
E HL + Y+LRR K++ + + K + ++ +SDLQ Y+ +L
Sbjct: 583 E---HL----QPYILRRLKKD-VEKSLPSKSERILRVELSDLQMYWYKNIL 625
Score = 38 (18.4 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 754 DPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIP 795
DPE+ K LED + D N P + KE+ +P
Sbjct: 1149 DPELKMKDKIFLEDT------KQTD--NSVPKDKENKEKKVP 1182
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 331 (121.6 bits), Expect = 5.8e-54, Sum P(2) = 5.8e-54
Identities = 71/171 (41%), Positives = 108/171 (63%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + +GY + RLDG TP R
Sbjct: 461 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 520
Query: 572 QS------------LVDDFNS-SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618
+ ++ FN+ + SK +F++STRAGGLG+NL SA+ V+++D +WNP D
Sbjct: 521 EDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVD 580
Query: 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
LQA DR+ R GQK+ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 581 LQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 631
Score = 316 (116.3 bits), Expect = 5.8e-54, Sum P(2) = 5.8e-54
Identities = 98/319 (30%), Positives = 162/319 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 162 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 208
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD----MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + V + G ++D I +++ +V +T
Sbjct: 209 NIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG-DKDARAAFIRDEMMPGEWDVCVT 267
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + +W +++DEAHR+KNEKSKL E K+ NR+ LTGT +QN +
Sbjct: 268 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 327
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + + F ++D + ++ + ER L AVL+ +LL
Sbjct: 328 ELWALLNFLLPDVFNSADDFDSWFDT-----KNCLGDQKLV----ER---LHAVLKPFLL 375
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLIN--KDLPCSCGSPLT 429
RR K + L KE + + +S +Q+ Y ++L + +I L + K + L
Sbjct: 376 RRIKTDVEKSLPPKKEIKI-YLGLSKMQREWYTKIL-MKDIDVLNSSGKMDKMRLLNILM 433
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 434 QLRKCCNHPYLFDGAEPGP 452
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 331 (121.6 bits), Expect = 6.8e-54, Sum P(2) = 6.8e-54
Identities = 71/171 (41%), Positives = 108/171 (63%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + +GY + RLDG TP R
Sbjct: 482 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 541
Query: 572 QS------------LVDDFNS-SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618
+ ++ FN+ + SK +F++STRAGGLG+NL SA+ V+++D +WNP D
Sbjct: 542 EDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVD 601
Query: 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
LQA DR+ R GQK+ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 602 LQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 652
Score = 316 (116.3 bits), Expect = 6.8e-54, Sum P(2) = 6.8e-54
Identities = 98/319 (30%), Positives = 162/319 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 229
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD----MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + V + G ++D I +++ +V +T
Sbjct: 230 NIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG-DKDARAAFIRDEMMPGEWDVCVT 288
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + +W +++DEAHR+KNEKSKL E K+ NR+ LTGT +QN +
Sbjct: 289 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 348
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + + F ++D + ++ + ER L AVL+ +LL
Sbjct: 349 ELWALLNFLLPDVFNSADDFDSWFDT-----KNCLGDQKLV----ER---LHAVLKPFLL 396
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLIN--KDLPCSCGSPLT 429
RR K + L KE + + +S +Q+ Y ++L + +I L + K + L
Sbjct: 397 RRIKTDVEKSLPPKKEIKI-YLGLSKMQREWYTKIL-MKDIDVLNSSGKMDKMRLLNILM 454
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 455 QLRKCCNHPYLFDGAEPGP 473
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 338 (124.0 bits), Expect = 7.0e-54, Sum P(4) = 7.0e-54
Identities = 66/161 (40%), Positives = 103/161 (63%)
Query: 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
CGK++ L L+ ++G ++L+F+ RMLD+LE+FL G+ + RLDGST RQ+L
Sbjct: 2042 CGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2101
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
++ FN+ F++STR+GG+G+NL A+ VV +D +WNP D QAQDR R GQ R V
Sbjct: 2102 MERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2161
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG-KLEKRYFE 674
++RL+S ++EE + + K+ L ++A+ G YF+
Sbjct: 2162 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFK 2202
Score = 336 (123.3 bits), Expect = 7.0e-54, Sum P(4) = 7.0e-54
Identities = 92/279 (32%), Positives = 147/279 (52%)
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
+P + +L E+Q G+ +L +Y+ K GIL D+MGLGKTIQTI+ LA + +
Sbjct: 610 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACE------ 663
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPNRDMILEK---LEAC 244
K N G LII P+SV+ NWE+E RW +F + Y+G ++ L++ +
Sbjct: 664 ---KGNW----GPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPN 716
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
V ITS+ NW +I+DEA +KN KS+ + + L ++ R+ LTGT
Sbjct: 717 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 776
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364
+QN +MEL++L ++ P + F+E++ PL G + + + +R L
Sbjct: 777 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GM-IEGSQEYNEGLVKR---LHK 831
Query: 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
VLR +LLRR K + + M K ++V+ C +S Q+ Y
Sbjct: 832 VLRPFLLRRVKVD-VEKQMPKKYEHVIRCRLSKRQRCLY 869
Score = 51 (23.0 bits), Expect = 7.0e-54, Sum P(4) = 7.0e-54
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 448 FCLVLPCLVKLQQISNHLELIKPNPRDEP 476
F V+ L++L+++ NH L P P P
Sbjct: 887 FMSVINILMQLRKVCNHPNLFDPRPVTSP 915
Score = 38 (18.4 bits), Expect = 7.0e-54, Sum P(4) = 7.0e-54
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 117 VLSKDGEYPIIQVPASINCRLLE 139
+L ++GE P+ ++ S+ +LLE
Sbjct: 323 LLRREGELPLEELLRSLPPQLLE 345
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 351 (128.6 bits), Expect = 7.2e-54, Sum P(2) = 7.2e-54
Identities = 74/192 (38%), Positives = 121/192 (63%)
Query: 482 DAELASAVFGPDID--LVGGNAQNE-SFIGLSDVKSC----GKMRALEKLMYSWASKGDK 534
D + S+ F P+ L+G QN SFI + D +S GK+ AL+ L+ S+G +
Sbjct: 1068 DWQKQSSQFFPEYPGGLLGIRPQNGWSFIRIPDKESLITDSGKLHALDLLLTRLKSQGHR 1127
Query: 535 ILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594
+L++S RM+D+LE++++ + +++ RLDGS+ + R+ +V DF + VFL+STRAG
Sbjct: 1128 VLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAG 1187
Query: 595 GLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQV 654
GLG+NL +A+ V+ +D +WNP D QA DR+ R GQ + V V+RL+ G++EE + R
Sbjct: 1188 GLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAK 1247
Query: 655 YKQQLSNIAVSG 666
K ++ + +SG
Sbjct: 1248 EKSEIQRMVISG 1259
Score = 300 (110.7 bits), Expect = 7.2e-54, Sum P(2) = 7.2e-54
Identities = 88/305 (28%), Positives = 148/305 (48%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
I P N +L +Q +G+ +L LY+ GIL D+MGLGKT+Q+IA LA + ++
Sbjct: 513 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIW 572
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHG-PNRDMILEKL--- 241
G LII P+S + NW EF+R+ F V Y G P+ ++ K
Sbjct: 573 -------------GPFLIISPASTLNNWHQEFARFVPKFKVLPYWGNPHDRKVIRKFWSQ 619
Query: 242 -----EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTR 296
+ V+ITS+ V W+ +++DEA LK+ S + L+ + R
Sbjct: 620 KTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCR 679
Query: 297 NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAPERFIRIA 355
NR+ LTGT +QN + EL+ L ++ P + E F E++ + ++ H + +A I
Sbjct: 680 NRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSA------ID 733
Query: 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL 415
+ + L +L+ ++LRR K++ L K + +++C + QK Y+ L I L
Sbjct: 734 ENQLSRLHMILKPFMLRRIKKDVENELS-DKIEILMYCQQTSRQKLLYQALKNKISIDDL 792
Query: 416 INKDL 420
+ +
Sbjct: 793 LQSSM 797
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 347 (127.2 bits), Expect = 7.3e-54, Sum P(2) = 7.3e-54
Identities = 76/205 (37%), Positives = 125/205 (60%)
Query: 501 AQNESFI-GLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSF 559
A+ E + G + + GKM L+KL+ +G ++L+FS RMLDILE +++ +GY +
Sbjct: 565 AEEEPYTTGEHLIDNSGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYMLYRGYKY 624
Query: 560 SRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618
+R+DGST S +R++ ++++N S FL++TRAGGLG+ L +A+ V++FD +WNP D
Sbjct: 625 ARIDGSTESIVRENSIENYNKPGSDLFAFLLTTRAGGLGITLNTADIVILFDSDWNPQMD 684
Query: 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQD 678
LQAQDR+ R GQ + V V+R ++ S+EE + + K QL + + + R E ++
Sbjct: 685 LQAQDRAHRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQLDALVIQ---QGRLVEANKN 741
Query: 679 CK--EFQGEL-FGICNLFRDLSDNL 700
K E L FG ++F+ S +
Sbjct: 742 AKPEELLAMLRFGADDIFKSKSSTI 766
Score = 301 (111.0 bits), Expect = 7.3e-54, Sum P(2) = 7.3e-54
Identities = 91/273 (33%), Positives = 139/273 (50%)
Query: 139 EHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDK 198
++Q G+ +L +LY+ GIL D+MGLGKT+QTI+ L L + K
Sbjct: 278 DYQVYGLNWLIQLYERGINGILADEMGLGKTLQTISLLG------------YLSEYK-GI 324
Query: 199 KGYVLIICPSSVIQNWEIEFSRWSTF-NVSIYHGPNR---DMILEKLEACGVEVLITSFD 254
+G LII P S + W EF+RW F V +HG D+ +L +V IT+++
Sbjct: 325 RGPHLIIAPKSTLSGWAKEFTRWCPFLRVVRFHGSKEEREDIKKNQLIFKKFDVCITTYE 384
Query: 255 SYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELY 314
S + +W +I+DEAHR+KNE S L ++ R+ +TGT +QN + EL+
Sbjct: 385 VAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLHELW 444
Query: 315 NLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRT 374
+L +++ P + + F +++D L + E + D K H VLR +LLRR
Sbjct: 445 SLLNFLLPDVFSSSDDFDKWFD--LANNT-----ENQQEVID--KLH--KVLRPFLLRRI 493
Query: 375 KEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
K E L KE + F +S +QK Y+RLL
Sbjct: 494 KTEVEKSLPPKKEIKL-FVGLSTMQKEWYKRLL 525
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 370 (135.3 bits), Expect = 8.1e-54, Sum P(3) = 8.1e-54
Identities = 76/164 (46%), Positives = 110/164 (67%)
Query: 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSR 561
+N I LS ++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L K Y F R
Sbjct: 779 ENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQR 838
Query: 562 LDGSTPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
LDGS +R+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQ
Sbjct: 839 LDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQ 898
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
AQ R+ R GQK+ V ++RL++ G++EE + R K L ++ +
Sbjct: 899 AQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 942
Score = 279 (103.3 bits), Expect = 8.1e-54, Sum P(3) = 8.1e-54
Identities = 79/250 (31%), Positives = 132/250 (52%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N L ++Q EG+ +L + + IL D+MGLGKTIQTI+FL+ +F + +
Sbjct: 483 NLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY------- 535
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEAC 244
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + +
Sbjct: 536 ------GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRL 589
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
LIT+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT
Sbjct: 590 KFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 649
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRL-TAPERFI--RIADERKQ 360
+QN + EL++L ++ P E F E + + ++G Q L E F+ R+ + ++
Sbjct: 650 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEK 709
Query: 361 HLVAVLRKYL 370
L A + + L
Sbjct: 710 SLPAKVEQIL 719
Score = 236 (88.1 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
Identities = 66/217 (30%), Positives = 113/217 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVEVLI 250
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + + LI
Sbjct: 536 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 595
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310
T+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +QN +
Sbjct: 596 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 655
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L ++ P E + +F ++ HG+ + Q L VL +L
Sbjct: 656 KELWSLLHFIMPEKF---EFWEDFEED---HGKG----------RENGYQSLHKVLEPFL 699
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 700 LRRVKKD-VEKSLPAKVEQILRVEMSALQKQYYKWIL 735
Score = 42 (19.8 bits), Expect = 8.1e-54, Sum P(3) = 8.1e-54
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDE 475
L +++L++ NH LIKP +E
Sbjct: 754 LNIVMELKKCCNHCYLIKPPEENE 777
Score = 37 (18.1 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 262 ILSEVNWEIVIVDEAHRLKNEKSKL 286
+ SE+N + IV+ +K KS L
Sbjct: 368 LASELNKQYQIVERVIAVKTSKSTL 392
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 330 (121.2 bits), Expect = 8.1e-54, Sum P(2) = 8.1e-54
Identities = 68/164 (41%), Positives = 102/164 (62%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V++ GK L++++ +G K+L+FS +LDIL + +GY +SRLDGS R
Sbjct: 611 VEASGKFLILDRMLPELKKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADR 670
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ F+S P +FL+STRAGGLG+NL SA+ V+IFD +WNP DLQAQDR R GQ
Sbjct: 671 DENMKKFSSDPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQT 730
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEG 675
+ V+V RL++A +++E + R K++L + + K F+G
Sbjct: 731 KPVVVHRLITANTIDEKILERASAKRKLEKMVI----HKNKFKG 770
Score = 313 (115.2 bits), Expect = 8.1e-54, Sum P(2) = 8.1e-54
Identities = 95/304 (31%), Positives = 158/304 (51%)
Query: 140 HQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKK 199
+Q EG+++L L++N GIL D+MGLGKTIQ IA +A ++ + KV
Sbjct: 236 YQVEGIEWLRMLWENGINGILADEMGLGKTIQCIAHIA------------MMVEKKV--L 281
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMI-LEK--------LEACGVEVL 249
G L++ P S + NW EF R++ +V +YHGP ++ + L K L C V+
Sbjct: 282 GPFLVVAPLSTLPNWISEFKRFTPEVSVLLYHGPQKERLDLVKKIRQHQGSLRMC--PVV 339
Query: 250 ITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNK 309
+TSF+ L +W +IVDE HR+KN +L L T N++ LTGT +QN
Sbjct: 340 VTSFEIAMRDRKFLQRFHWNYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTGTPLQNN 399
Query: 310 IMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV----AV 365
+ EL++L +++ P + F ++D +T+ I +A+ER+Q+++ +
Sbjct: 400 LSELWSLLNFLLPDVFDDLKSFESWFDI-----STITSDAENI-VANEREQNILHMLHLI 453
Query: 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCG 425
L +LLRR K + + KE VV+ +++ Q+ Y ++ I L+ ++ S
Sbjct: 454 LTPFLLRRLKSDVTLEVPPKKEI-VVYAPLTNKQEAFYMAIVN-KTIAKLLGQEKDESAP 511
Query: 426 SPLT 429
+PLT
Sbjct: 512 APLT 515
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 351 (128.6 bits), Expect = 8.2e-54, Sum P(2) = 8.2e-54
Identities = 103/280 (36%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
IN L +Q +G++++ LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 774
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V I Y G P R ++ +L + VL
Sbjct: 775 EHK-RLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVL 833
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL RI LTGT +Q
Sbjct: 834 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQ 892
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+R+ E I R+ H VL
Sbjct: 893 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET-ILIIRRLH--KVL 949
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQK YR +
Sbjct: 950 RPFLLRRLKKEVESQLPE-KVEYVIKCDMSALQKILYRHM 988
Score = 299 (110.3 bits), Expect = 8.2e-54, Sum P(2) = 8.2e-54
Identities = 62/161 (38%), Positives = 98/161 (60%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ + ++LLF ++ I+E + + + + RLDG+T S R
Sbjct: 1054 RASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA 1113
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+L+ FN S+ +FL+STRAGGLGLNL +A+ VVIFD +WNP QDLQAQDR+ R GQ+
Sbjct: 1114 ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ 1173
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V V RL + S+EE + YK + + +G +++
Sbjct: 1174 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1214
Score = 37 (18.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 455 LVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDI 494
L+ Q L P+ R P A+AV GP +
Sbjct: 275 LMTAQNTQQKLSAPAPSGRPSPAPPAATQPTATAVPGPSV 314
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 351 (128.6 bits), Expect = 9.3e-54, Sum P(2) = 9.3e-54
Identities = 103/280 (36%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
IN L +Q +G++++ LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 751
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V I Y G P R ++ +L + VL
Sbjct: 752 EHK-RLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVL 810
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL RI LTGT +Q
Sbjct: 811 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQ 869
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+R+ E I R+ H VL
Sbjct: 870 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET-ILIIRRLH--KVL 926
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQK YR +
Sbjct: 927 RPFLLRRLKKEVESQLPE-KVEYVIKCDMSALQKILYRHM 965
Score = 299 (110.3 bits), Expect = 9.3e-54, Sum P(2) = 9.3e-54
Identities = 62/161 (38%), Positives = 98/161 (60%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ + ++LLF ++ I+E + + + + RLDG+T S R
Sbjct: 1031 RASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA 1090
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+L+ FN S+ +FL+STRAGGLGLNL +A+ VVIFD +WNP QDLQAQDR+ R GQ+
Sbjct: 1091 ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ 1150
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V V RL + S+EE + YK + + +G +++
Sbjct: 1151 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1191
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 338 (124.0 bits), Expect = 9.5e-54, Sum P(3) = 9.5e-54
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 797
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 798 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 857 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 915
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 916 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 972
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 973 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 1011
Score = 314 (115.6 bits), Expect = 9.5e-54, Sum P(3) = 9.5e-54
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 1059 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 1113
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVI 608
+ +G+ + RLDG+T + R L+ FN S+ +FL+STRAGGLGLNL SA+ V+I
Sbjct: 1114 DYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVII 1173
Query: 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGK 667
FD +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 1174 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM 1233
Query: 668 LEKR 671
+++
Sbjct: 1234 FDQK 1237
Score = 49 (22.3 bits), Expect = 9.5e-54, Sum P(3) = 9.5e-54
Identities = 25/115 (21%), Positives = 45/115 (39%)
Query: 724 QGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQ 783
Q K +E + + S+ RK D E A +S P R+ D +K+
Sbjct: 1354 QWLKAIEEGTLEEIEEEVRQKKSSRKRKR-DSE-AGSSTPTTSTRS-----RDKDEESKK 1406
Query: 784 PGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLAR 838
Q+K+ + LS PP + K + ++D + +S + + L +R
Sbjct: 1407 ---QKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR 1458
Score = 40 (19.1 bits), Expect = 8.2e-53, Sum P(3) = 8.2e-53
Identities = 14/79 (17%), Positives = 34/79 (43%)
Query: 733 IVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEE 792
+ ++ + GS+ RK D + T K L+ + ++ V ++ +++K +
Sbjct: 1324 LTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRD 1383
Query: 793 SIPQDLSSRPPPIHSKRRN 811
S + S P ++ R+
Sbjct: 1384 S---EAGSSTPTTSTRSRD 1399
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 351 (128.6 bits), Expect = 9.6e-54, Sum P(2) = 9.6e-54
Identities = 103/280 (36%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
IN L +Q +G++++ LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 720 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 767
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V I Y G P R ++ +L + VL
Sbjct: 768 EHK-RLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVL 826
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL RI LTGT +Q
Sbjct: 827 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQ 885
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+R+ E I R+ H VL
Sbjct: 886 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET-ILIIRRLH--KVL 942
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQK YR +
Sbjct: 943 RPFLLRRLKKEVESQLPE-KVEYVIKCDMSALQKILYRHM 981
Score = 299 (110.3 bits), Expect = 9.6e-54, Sum P(2) = 9.6e-54
Identities = 62/161 (38%), Positives = 98/161 (60%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ + ++LLF ++ I+E + + + + RLDG+T S R
Sbjct: 1047 RASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA 1106
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+L+ FN S+ +FL+STRAGGLGLNL +A+ VVIFD +WNP QDLQAQDR+ R GQ+
Sbjct: 1107 ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ 1166
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V V RL + S+EE + YK + + +G +++
Sbjct: 1167 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1207
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 351 (128.6 bits), Expect = 9.7e-54, Sum P(2) = 9.7e-54
Identities = 103/280 (36%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
IN L +Q +G++++ LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 774
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V I Y G P R ++ +L + VL
Sbjct: 775 EHK-RLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVL 833
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL RI LTGT +Q
Sbjct: 834 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQ 892
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+R+ E I R+ H VL
Sbjct: 893 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET-ILIIRRLH--KVL 949
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQK YR +
Sbjct: 950 RPFLLRRLKKEVESQLPE-KVEYVIKCDMSALQKILYRHM 988
Score = 299 (110.3 bits), Expect = 9.7e-54, Sum P(2) = 9.7e-54
Identities = 62/161 (38%), Positives = 98/161 (60%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ + ++LLF ++ I+E + + + + RLDG+T S R
Sbjct: 1054 RASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA 1113
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+L+ FN S+ +FL+STRAGGLGLNL +A+ VVIFD +WNP QDLQAQDR+ R GQ+
Sbjct: 1114 ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ 1173
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V V RL + S+EE + YK + + +G +++
Sbjct: 1174 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1214
Score = 37 (18.1 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 455 LVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDI 494
L+ Q L P+ R P A+AV GP +
Sbjct: 275 LMTAQNTQQKLSAPAPSGRPSPAPPAATQPTATAVPGPSV 314
>DICTYBASE|DDB_G0285117 [details] [associations]
symbol:rad54b "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0285117 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000074 KO:K10877 RefSeq:XP_639875.1 STRING:Q54NP1
EnsemblProtists:DDB0232413 GeneID:8624946 KEGG:ddi:DDB_G0285117
InParanoid:Q54NP1 OMA:PINKSRE ProtClustDB:CLSZ2735674
Uniprot:Q54NP1
Length = 989
Score = 326 (119.8 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 93/340 (27%), Positives = 164/340 (48%)
Query: 115 PLVLSKDGEYPI-IQVPASINCRLLEHQREGVKFLYKLYK-NKH-----GGILGDDMGLG 167
P L ++G + + + I L HQR GVKFLY N + G IL D MGLG
Sbjct: 256 PSQLDEEGNKVVHVVLDPYIGRHLRPHQRRGVKFLYDCVTGNSNDNGYSGAILADQMGLG 315
Query: 168 KTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVS 227
KT+QT+A L + + TI K +I+ PS+++ NW+ E +W N
Sbjct: 316 KTLQTLALLWTLLKQSPYGKPTIKK---------AIIVTPSTLVNNWKSEIQKWFG-NGR 365
Query: 228 IYHGPNRDMILEKLEA------CGVE-VLITSFDSYRIHGSILSEVNWEIVIVDEAHRLK 280
+ D + ++ +A ++ VLI S++ RI L ++ +++ DEAHRLK
Sbjct: 366 LIASTLTDSLTKETKANLNDFNTSIKPVLIISYEQCRIFSKELETMSCGLMVCDEAHRLK 425
Query: 281 NEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK 340
N +K + + ++ +I LTGT +QN ++E Y++ D+ P LG+ F++ + P+
Sbjct: 426 NSNAKTTQSIMSVRCDRKILLTGTPIQNNLVEFYSMMDFANPNCLGSLADFKKSFIIPIN 485
Query: 341 HGQRLTAPERFIRIADERKQ-HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQ 399
+ +P RK L +++ +++RR K + + K ++FC +S LQ
Sbjct: 486 KSRE--SPNSTSTSEGIRKSIQLSKLVKPFIIRR-KSNILEKYLPPKRVQIIFCKLSSLQ 542
Query: 400 KRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDN 439
Y+ +L ++ L++ + L+ + K+L N
Sbjct: 543 IELYKSILNSNSVKSLLSGGGSRGSATSLSTITLLKKLCN 582
Score = 318 (117.0 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 76/227 (33%), Positives = 124/227 (54%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSD 511
L + L+++ N L+ N + + +++ E+ + + + L +N I
Sbjct: 571 LSTITLLKKLCNSPSLLLLNNKQDEGGEQQQTEIQNILKKHNYTL-----ENYQEIQEQQ 625
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
GK+ +E L+ +K++L S + LD+ E+ R RLDG ++ R
Sbjct: 626 DNESGKLLFVESLIKQLKPMNEKLVLVSNFTKTLDVFERLCKRLSIDTLRLDGDVKADSR 685
Query: 572 QSLVDDFNSSP-----SK------QVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
Q+LVD FNSS SK QVFL+S +AGG+G+NL+ N +V++DP+WNPA D+Q
Sbjct: 686 QALVDKFNSSTQNVSSSKSSSSQYQVFLLSAKAGGVGINLIGGNHLVLYDPDWNPAIDIQ 745
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK 667
A +R +R GQ + V ++RL S G++EE +Y RQ+ K+ +SN V K
Sbjct: 746 AMERIWREGQTKPVFIYRLFSTGTIEEKIYQRQLMKESISNSIVDKK 792
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 334 (122.6 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 96/291 (32%), Positives = 148/291 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L E+Q EGV +L Y N IL D+MGLGKT+QTI FL+ ++ D I
Sbjct: 1197 LREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLSRIY------DYGI------ 1244
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPN--RDMILEKLEA------CG--- 245
G L++ P S IQNW EF W+ N +YHG R+ +L++ E CG
Sbjct: 1245 --HGPFLVVVPLSTIQNWVREFETWTDMNAIVYHGSAYARE-VLQQYEVFYDKRHCGAKN 1301
Query: 246 -------VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYM-ACLELKTRN 297
++ LIT+F++ L ++ W + ++DEAHRLKN KL + L + +
Sbjct: 1302 WKKNFVKIDALITTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEH 1361
Query: 298 RIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADE 357
R+ LTGT +QN I EL++L +++ P F E + G T D+
Sbjct: 1362 RVLLTGTPLQNNIDELFSLLNFLHPQQFDNSATFLEQF------GSCQT---------DD 1406
Query: 358 RKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
+ Q L +L+ +LRR KE+ + + KE+ ++ +SD+QK+ YR +L+
Sbjct: 1407 QVQKLQEILKPMMLRRLKED-VEKSLGPKEETIIEVQLSDMQKKFYRAILE 1456
Score = 331 (121.6 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 65/146 (44%), Positives = 99/146 (67%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+++ GK+ +EKL+ G K+L+FS V++LD+LE+FLI Y F R+DG+ +LR
Sbjct: 1517 IQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDLR 1576
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ V+IFD +WNP DLQAQ R R GQ
Sbjct: 1577 QAAIDRFSKENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQ 1636
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
K+ V V+RL+++ + E ++ + K
Sbjct: 1637 KKLVKVYRLITSNTYEREMFDKASLK 1662
Score = 79 (32.9 bits), Expect = 2.8e-27, Sum P(4) = 2.8e-27
Identities = 29/126 (23%), Positives = 56/126 (44%)
Query: 291 LELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFY-----DEPLKHGQRL 345
L + +R+ LTGT +QN I EL++L +++ P F E + D+ ++ Q +
Sbjct: 1355 LAFRMEHRVLLTGTPLQNNIDELFSLLNFLHPQQFDNSATFLEQFGSCQTDDQVQKLQEI 1414
Query: 346 TAPERFIRIADE-------RKQHLVAV----LRKYLLRRTKEETIGHLMMGKEDNVVFCT 394
P R+ ++ +++ ++ V ++K R E HL G +
Sbjct: 1415 LKPMMLRRLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAILERNFSHLCKGTSAPSLMNV 1474
Query: 395 MSDLQK 400
M +L+K
Sbjct: 1475 MMELRK 1480
Score = 49 (22.3 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 853 SATPSAREKLLQDYRKRKK 871
+ATP RE ++++ RKR K
Sbjct: 1775 TATPDGRELIIEEPRKRTK 1793
Score = 45 (20.9 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 43 PPKSSLAQQLQ--RLGETYNFSLPQQNPETRRE-KAPVEKSNVFDDXXXXXXXXXXXFGR 99
P +AQQ Q R+G ++ Q ++ E KA +++ +++ +
Sbjct: 283 PQSMQMAQQEQWGRVGTNDLMNVIAQVEKSSAECKARIQQ--LYNMQRSASADAEVQQLQ 340
Query: 100 HQLGQFQFDH 109
H+L QFQ DH
Sbjct: 341 HKLAQFQSDH 350
Score = 45 (20.9 bits), Expect = 8.3e-24, Sum P(4) = 8.3e-24
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 457 KLQQISNHLELIKPNPRDEP 476
+LQ IS+ E+++ P++EP
Sbjct: 661 ELQAISDQQEILEDVPKEEP 680
Score = 38 (18.4 bits), Expect = 7.1e-53, Sum P(4) = 7.1e-53
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 64 PQQNPETRREKAPVEKSN-VFDDXXXXXXXXXXXFGRHQLGQFQFD 108
P + PE + +PV++S V D FG + Q + D
Sbjct: 802 PVEEPEPMDDSSPVDQSTPVKADDIENFAGVEETFGEEEEVQDEDD 847
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 327 (120.2 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 70/171 (40%), Positives = 108/171 (63%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + +GY + RLDG TP R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 572 QS------------LVDDFN-SSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618
++ ++ FN + S+ +F++STRAGGLG+NL SA+ V+++D +WNP D
Sbjct: 545 ENGFLQIYFRRRREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVD 604
Query: 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
LQA DR+ R GQK+ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 605 LQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 655
Score = 317 (116.6 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 98/319 (30%), Positives = 161/319 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 232
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD----MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + V + G ++D I +++ +V +T
Sbjct: 233 NIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG-DKDARAAFIRDEMMPGEWDVCVT 291
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + +W +++DEAHR+KNEKSKL E K+ NR+ LTGT +QN +
Sbjct: 292 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 351
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + + F ++D + ++ + ER L AVL+ +LL
Sbjct: 352 ELWALLNFLLPDVFNSADDFDSWFDT-----KNCLGDQKLV----ER---LHAVLKPFLL 399
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPLT 429
RR K + L KE + + +S +Q+ Y ++L + +I L K + L
Sbjct: 400 RRIKTDVEKSLPPKKEIKI-YLGLSKMQREWYTKIL-MKDIDVLNSAGKMDKMRLLNILM 457
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 458 QLRKCCNHPYLFDGAEPGP 476
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 363 (132.8 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 102/291 (35%), Positives = 154/291 (52%)
Query: 119 SKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAA 178
SK YP+ P IN L ++Q++GV +L L K K GIL DDMGLGKT+QTI +A
Sbjct: 1362 SKVENYPL---PIRINTELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQTICIIA- 1417
Query: 179 VFGKDESSDSTILKDNKVDKKGYV-LIICPSSVIQNWEIEFSRW---STFNVSIYHGPNR 234
G D + D L+ICP S++ +W E ++ ST Y G
Sbjct: 1418 --GDDYHRRVNYQEKGTPDFAPLPSLVICPPSLVGHWFYEIKKFCSDSTMKPMTYMGNPS 1475
Query: 235 DMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELK 294
+ ++ + VLI S+D R ILSE+++ I+DE H +KN K+KL A L+
Sbjct: 1476 ERQAQRSKFKDHNVLIMSYDIMRNDIDILSEMHFNYCILDEGHIIKNAKTKLTQAAKRLQ 1535
Query: 295 TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQ--RLTAPERFI 352
+ +R+ L+GT +QN ++EL++LFD++ PG LGT + F E Y +P+ + + + ++
Sbjct: 1536 SNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKLFNELYSKPILASKDPKCSTKDQEA 1595
Query: 353 RIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
+ H VL +LLRR KE+ + L K +C +S LQ R Y
Sbjct: 1596 GVLAMEALHR-QVL-PFLLRRLKEDVLADLPP-KIIQDRYCNLSPLQIRLY 1643
Score = 287 (106.1 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 56/135 (41%), Positives = 89/135 (65%)
Query: 534 KILLFSYSVRMLDILEKFLIRK---GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590
++L+F+ MLDI+E L +K ++ R+DGS + R S+V+ FNS P+ V L++
Sbjct: 1781 RVLIFAQMKSMLDIVENELFKKHLPSVTYLRMDGSVETMKRHSIVNQFNSDPTIDVLLLT 1840
Query: 591 TRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVY 650
T GGLGLNL A+ V+ + +WNP +DLQA DR+ R GQK+ V V+RL+++G+LEE +
Sbjct: 1841 THVGGLGLNLTGADTVIFLEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITSGTLEEKIM 1900
Query: 651 TRQVYKQQLSNIAVS 665
Q +K ++N ++
Sbjct: 1901 GLQKFKLNIANTVIN 1915
Score = 42 (19.8 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 150 KLYKNKHGGILG 161
KL++ +HGG+LG
Sbjct: 452 KLWEVRHGGMLG 463
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 330 (121.2 bits), Expect = 1.7e-53, Sum P(2) = 1.7e-53
Identities = 106/320 (33%), Positives = 159/320 (49%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L +Q EGV +L + + ++G ILGD+MGLGKT QTIA + G+ L D
Sbjct: 48 LRPYQLEGVNWLAQCFHYQNGCILGDEMGLGKTCQTIAVFIYLAGR--------LND--- 96
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHGPNRDM--ILEKL-EACGVEVLITS 252
+G LI+CP SV+ NW+ E R + + Y G + + + L + G VL+T+
Sbjct: 97 --EGPFLILCPLSVLSNWKEEMERCAPGLCCVTYAGDKEERAHLQQDLKQESGFHVLLTT 154
Query: 253 FDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIME 312
++ S L W +++VDEAHRLKN+ S L+ + E R+ LTGT +QN + E
Sbjct: 155 YEICLKDASFLKSFPWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTPIQNSLQE 214
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLR 372
LY+L +V P L ++E +F QR E+ A E L +L+ +LLR
Sbjct: 215 LYSLLSFVEP-DLFSKEEVEDFV-------QRYEDIEKESESASE----LYKLLQPFLLR 262
Query: 373 RTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLP-EIQCLINKDLP--CSCGSPLT 429
R K E L K + V++ MS LQK+ Y+ +L EI ++ + L+
Sbjct: 263 RVKAEVAAELPK-KTEVVIYHGMSALQKKYYKAILMKDLEISDAFENEMAKKVKLQNVLS 321
Query: 430 QVECCKRLDNL-DGCDSCPF 448
Q+ C L DG + PF
Sbjct: 322 QLRKCVDHPYLFDGVEPEPF 341
Score = 311 (114.5 bits), Expect = 1.7e-53, Sum P(2) = 1.7e-53
Identities = 65/164 (39%), Positives = 102/164 (62%)
Query: 504 ESF-IGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRL 562
E F IG +++ GK+ L+KL+ SKG ++LLFS +MLDIL+ ++ +GYS+ R+
Sbjct: 339 EPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYMDYRGYSYERV 398
Query: 563 DGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQ 622
DGS R + +F P +FL+STRAGG+G+NL +A+ V+ D ++NP DLQA
Sbjct: 399 DGSVRGEERHLAIKNFGQQPIF-IFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAA 457
Query: 623 DRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
R+ R GQ + V V RL+ ++EE++ + K +L+N + G
Sbjct: 458 ARAHRIGQNKSVKVIRLIGRDTVEEIICRKAASKLKLTNTIIEG 501
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 336 (123.3 bits), Expect = 1.8e-53, Sum P(4) = 1.8e-53
Identities = 92/279 (32%), Positives = 147/279 (52%)
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
+P + +L E+Q G+ +L +Y+ K GIL D+MGLGKTIQTI+ LA + +
Sbjct: 620 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACE------ 673
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPNRDMILEK---LEAC 244
K N G LII P+SV+ NWE+E RW +F + Y+G ++ L++ +
Sbjct: 674 ---KGNW----GPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPN 726
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
V ITS+ NW +I+DEA +KN KS+ + + L ++ R+ LTGT
Sbjct: 727 AFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 786
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364
+QN +MEL++L ++ P + F+E++ PL G + + + +R L
Sbjct: 787 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GM-IEGSQEYNEGLVKR---LHK 841
Query: 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
VLR +LLRR K + + M K ++V+ C +S Q+ Y
Sbjct: 842 VLRPFLLRRVKVD-VEKQMPKKYEHVIRCRLSKRQRCLY 879
Score = 329 (120.9 bits), Expect = 1.8e-53, Sum P(4) = 1.8e-53
Identities = 65/160 (40%), Positives = 102/160 (63%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GK++ L L+ ++G ++L+F+ RMLD+LE+FL G+ + RLDGST RQ+L+
Sbjct: 2031 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2090
Query: 576 DDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635
+ FN+ F++STR+GG+G+NL A+ VV +D +WNP D QAQDR R GQ R V
Sbjct: 2091 ERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 2150
Query: 636 VFRLLSAGSLEELVYTRQVYKQQLSNIAVSG-KLEKRYFE 674
++RL+S ++EE + + K+ L ++A+ G YF+
Sbjct: 2151 IYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFK 2190
Score = 51 (23.0 bits), Expect = 1.8e-53, Sum P(4) = 1.8e-53
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 448 FCLVLPCLVKLQQISNHLELIKPNPRDEP 476
F V+ L++L+++ NH L P P P
Sbjct: 897 FMSVINILMQLRKVCNHPNLFDPRPVTSP 925
Score = 43 (20.2 bits), Expect = 1.8e-53, Sum P(4) = 1.8e-53
Identities = 29/115 (25%), Positives = 45/115 (39%)
Query: 750 RKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRPPPIHSKR 809
R S P + S +LE G+ V +QP Q + E S + SRP ++
Sbjct: 2971 RPSQHPVLDPDSSSVLESCGLG--------VQRQPLGQAESEGSSSDEDGSRPLTRLARL 3022
Query: 810 RNLLDCADGKESLASSKDRKNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQ 864
R + G++S S I+ L G E + ++S TP R L+
Sbjct: 3023 RLEAEGMRGRKS-EGSMVMAVIQDDLDLADSGPSGLELTPPVVSLTPKFRSTRLR 3076
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 338 (124.0 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 797
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 798 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 857 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 915
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 916 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 972
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 973 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 1011
Score = 314 (115.6 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 1059 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 1113
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVI 608
+ +G+ + RLDG+T + R L+ FN S+ +FL+STRAGGLGLNL SA+ V+I
Sbjct: 1114 DYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVII 1173
Query: 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGK 667
FD +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 1174 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM 1233
Query: 668 LEKR 671
+++
Sbjct: 1234 FDQK 1237
Score = 47 (21.6 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
Identities = 25/118 (21%), Positives = 46/118 (38%)
Query: 721 CTNQGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIV 780
CT K +E + + S+ RK D + A +S P R+ D
Sbjct: 1417 CTRAS-KAIEEGTLEEIEEEVRQKKSSRKRKR-DSD-AGSSTPTTSTRS-----RDKDDE 1468
Query: 781 NKQPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLAR 838
+K+ Q+K+ + LS PP + K + ++D + +S + + L +R
Sbjct: 1469 SKK---QKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR 1523
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 326 (119.8 bits), Expect = 1.9e-53, Sum P(2) = 1.9e-53
Identities = 70/171 (40%), Positives = 107/171 (62%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + +GY + RLDG TP R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 572 QS------------LVDDFN-SSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618
+ ++ FN + S+ +F++STRAGGLG+NL SA+ V+++D +WNP D
Sbjct: 545 EDKFLEVELLGQREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVD 604
Query: 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
LQA DR+ R GQK+ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 605 LQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 655
Score = 317 (116.6 bits), Expect = 1.9e-53, Sum P(2) = 1.9e-53
Identities = 98/319 (30%), Positives = 161/319 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 232
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD----MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + V + G ++D I +++ +V +T
Sbjct: 233 NIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG-DKDARAAFIRDEMMPGEWDVCVT 291
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + +W +++DEAHR+KNEKSKL E K+ NR+ LTGT +QN +
Sbjct: 292 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 351
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + + F ++D + ++ + ER L AVL+ +LL
Sbjct: 352 ELWALLNFLLPDVFNSADDFDSWFDT-----KNCLGDQKLV----ER---LHAVLKPFLL 399
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPLT 429
RR K + L KE + + +S +Q+ Y ++L + +I L K + L
Sbjct: 400 RRIKTDVEKSLPPKKEIKI-YLGLSKMQREWYTKIL-MKDIDVLNSAGKMDKMRLLNILM 457
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 458 QLRKCCNHPYLFDGAEPGP 476
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 338 (124.0 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 797
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 798 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 857 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 915
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 916 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 972
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 973 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 1011
Score = 314 (115.6 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 1059 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 1113
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVI 608
+ +G+ + RLDG+T + R L+ FN S+ +FL+STRAGGLGLNL SA+ V+I
Sbjct: 1114 DYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVII 1173
Query: 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGK 667
FD +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 1174 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM 1233
Query: 668 LEKR 671
+++
Sbjct: 1234 FDQK 1237
Score = 46 (21.3 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 22/91 (24%), Positives = 37/91 (40%)
Query: 724 QGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQ 783
Q K +E + + S+ RK D E A +S P R+ D +K+
Sbjct: 1354 QWLKAIEEGTLEEIEEEVRQKKSSRKRKR-DSE-AGSSTPTTSTRS-----RDKDEESKK 1406
Query: 784 PGFQRKKEESIPQDLSSRPPPIHSKRRNLLD 814
Q+K+ + LS PP + K + ++D
Sbjct: 1407 ---QKKRGRPPAEKLSPNPPNLTKKMKKIVD 1434
Score = 40 (19.1 bits), Expect = 8.2e-53, Sum P(3) = 8.2e-53
Identities = 14/79 (17%), Positives = 34/79 (43%)
Query: 733 IVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEE 792
+ ++ + GS+ RK D + T K L+ + ++ V ++ +++K +
Sbjct: 1324 LTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRD 1383
Query: 793 SIPQDLSSRPPPIHSKRRN 811
S + S P ++ R+
Sbjct: 1384 S---EAGSSTPTTSTRSRD 1399
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 338 (124.0 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 797
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 798 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 857 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 915
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 916 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 972
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 973 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 1011
Score = 314 (115.6 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 1059 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 1113
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVI 608
+ +G+ + RLDG+T + R L+ FN S+ +FL+STRAGGLGLNL SA+ V+I
Sbjct: 1114 DYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVII 1173
Query: 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGK 667
FD +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 1174 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM 1233
Query: 668 LEKR 671
+++
Sbjct: 1234 FDQK 1237
Score = 46 (21.3 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 22/91 (24%), Positives = 37/91 (40%)
Query: 724 QGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQ 783
Q K +E + + S+ RK D E A +S P R+ D +K+
Sbjct: 1354 QWLKAIEEGTLEEIEEEVRQKKSSRKRKR-DSE-AGSSTPTTSTRS-----RDKDEESKK 1406
Query: 784 PGFQRKKEESIPQDLSSRPPPIHSKRRNLLD 814
Q+K+ + LS PP + K + ++D
Sbjct: 1407 ---QKKRGRPPAEKLSPNPPNLTKKMKKIVD 1434
Score = 40 (19.1 bits), Expect = 8.2e-53, Sum P(3) = 8.2e-53
Identities = 14/79 (17%), Positives = 34/79 (43%)
Query: 733 IVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEE 792
+ ++ + GS+ RK D + T K L+ + ++ V ++ +++K +
Sbjct: 1324 LTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRD 1383
Query: 793 SIPQDLSSRPPPIHSKRRN 811
S + S P ++ R+
Sbjct: 1384 S---EAGSSTPTTSTRSRD 1399
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 338 (124.0 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 797
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 798 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 857 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 915
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 916 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 972
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 973 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 1011
Score = 314 (115.6 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 1059 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 1113
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVI 608
+ +G+ + RLDG+T + R L+ FN S+ +FL+STRAGGLGLNL SA+ V+I
Sbjct: 1114 DYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVII 1173
Query: 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGK 667
FD +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 1174 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM 1233
Query: 668 LEKR 671
+++
Sbjct: 1234 FDQK 1237
Score = 46 (21.3 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 24/115 (20%), Positives = 45/115 (39%)
Query: 724 QGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQ 783
Q K +E + + S+ RK D + A +S P R+ D +K+
Sbjct: 1354 QWLKAIEEGTLEEIEEEVRQKKSSRKRKR-DSD-AGSSTPTTSTRS-----RDKDDESKK 1406
Query: 784 PGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLAR 838
Q+K+ + LS PP + K + ++D + +S + + L +R
Sbjct: 1407 ---QKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR 1458
Score = 44 (20.5 bits), Expect = 3.1e-53, Sum P(3) = 3.1e-53
Identities = 15/79 (18%), Positives = 34/79 (43%)
Query: 733 IVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEE 792
+ ++ + GS+ RK D + T K L+ + ++ V ++ +++K +
Sbjct: 1324 LTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRD 1383
Query: 793 SIPQDLSSRPPPIHSKRRN 811
S D S P ++ R+
Sbjct: 1384 S---DAGSSTPTTSTRSRD 1399
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 326 (119.8 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 70/171 (40%), Positives = 107/171 (62%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + +GY + RLDG TP R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 572 QS------------LVDDFN-SSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618
+ ++ FN + S+ +F++STRAGGLG+NL SA+ V+++D +WNP D
Sbjct: 545 EDKFLEVELLGQREAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVD 604
Query: 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
LQA DR+ R GQK+ V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 605 LQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 655
Score = 317 (116.6 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 98/319 (30%), Positives = 161/319 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 232
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD----MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + V + G ++D I +++ +V +T
Sbjct: 233 NIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG-DKDARAAFIRDEMMPGEWDVCVT 291
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + +W +++DEAHR+KNEKSKL E K+ NR+ LTGT +QN +
Sbjct: 292 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLH 351
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + + F ++D + ++ + ER L AVL+ +LL
Sbjct: 352 ELWALLNFLLPDVFNSADDFDSWFDT-----KNCLGDQKLV----ER---LHAVLKPFLL 399
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPLT 429
RR K + L KE + + +S +Q+ Y ++L + +I L K + L
Sbjct: 400 RRIKTDVEKSLPPKKEIKI-YLGLSKMQREWYTKIL-MKDIDVLNSAGKMDKMRLLNILM 457
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 458 QLRKCCNHPYLFDGAEPGP 476
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 330 (121.2 bits), Expect = 2.1e-53, Sum P(2) = 2.1e-53
Identities = 67/146 (45%), Positives = 95/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
++S GK+ ++KL+ + G K+L+FS VR LDILE +LI K Y + R+DG NLR
Sbjct: 704 IQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLR 763
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 764 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 823
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ R K
Sbjct: 824 NKAVKVYRLVTRNSYEREMFDRASLK 849
Score = 313 (115.2 bits), Expect = 2.1e-53, Sum P(2) = 2.1e-53
Identities = 95/289 (32%), Positives = 148/289 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL + +L
Sbjct: 385 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI----------LL---- 430
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLE----------- 242
+G LII P S I NWE EF W+ NV +YHG +R MI ++ E
Sbjct: 431 TGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMI-QQYEMYFRDSQGRII 489
Query: 243 --ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIG 300
A + +IT+F+ L+ + W VI+DEAHRLKN+ KL + +++
Sbjct: 490 RGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 549
Query: 301 LTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI-ADERK 359
LTGT +QN + EL++L HF E PL+ T + F + +E+
Sbjct: 550 LTGTPLQNTVEELFSLL------------HFLE----PLRFPSESTFMQEFGDLKTEEQV 593
Query: 360 QHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
Q L A+L+ +LRR KE+ + + KE+ ++ ++++QK+ YR +L+
Sbjct: 594 QKLQAILKPMMLRRLKED-VEKKLAPKEETIIEVELTNIQKKYYRAILE 641
Score = 40 (19.1 bits), Expect = 9.3e-25, Sum P(2) = 9.3e-25
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 280 KNEKSKLYMACLELKTRNRIG 300
K++ SK C +LK + +IG
Sbjct: 101 KDKDSKKTKTCSKLKEKTKIG 121
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 338 (124.0 bits), Expect = 2.1e-53, Sum P(3) = 2.1e-53
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 797
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 798 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 857 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 915
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 916 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 972
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 973 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 1011
Score = 314 (115.6 bits), Expect = 2.1e-53, Sum P(3) = 2.1e-53
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 1059 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 1113
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVI 608
+ +G+ + RLDG+T + R L+ FN S+ +FL+STRAGGLGLNL SA+ V+I
Sbjct: 1114 DYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVII 1173
Query: 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGK 667
FD +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 1174 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM 1233
Query: 668 LEKR 671
+++
Sbjct: 1234 FDQK 1237
Score = 46 (21.3 bits), Expect = 2.1e-53, Sum P(3) = 2.1e-53
Identities = 24/115 (20%), Positives = 45/115 (39%)
Query: 724 QGFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQ 783
Q K +E + + S+ RK D + A +S P R+ D +K+
Sbjct: 1387 QWLKAIEEGTLEEIEEEVRQKKSSRKRKR-DSD-AGSSTPTTSTRS-----RDKDDESKK 1439
Query: 784 PGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLAR 838
Q+K+ + LS PP + K + ++D + +S + + L +R
Sbjct: 1440 ---QKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR 1491
Score = 44 (20.5 bits), Expect = 3.4e-53, Sum P(3) = 3.4e-53
Identities = 15/79 (18%), Positives = 34/79 (43%)
Query: 733 IVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEE 792
+ ++ + GS+ RK D + T K L+ + ++ V ++ +++K +
Sbjct: 1357 LTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRD 1416
Query: 793 SIPQDLSSRPPPIHSKRRN 811
S D S P ++ R+
Sbjct: 1417 S---DAGSSTPTTSTRSRD 1432
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 338 (124.0 bits), Expect = 2.4e-53, Sum P(3) = 2.4e-53
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 742 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 789
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 790 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 848
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 849 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 907
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 908 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 964
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 965 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 1003
Score = 314 (115.6 bits), Expect = 2.4e-53, Sum P(3) = 2.4e-53
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 1051 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 1105
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVI 608
+ +G+ + RLDG+T + R L+ FN S+ +FL+STRAGGLGLNL SA+ V+I
Sbjct: 1106 DYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVII 1165
Query: 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGK 667
FD +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 1166 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM 1225
Query: 668 LEKR 671
+++
Sbjct: 1226 FDQK 1229
Score = 45 (20.9 bits), Expect = 2.4e-53, Sum P(3) = 2.4e-53
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 787 QRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLAR 838
Q+K+ + LS PP + K + ++D + +S + + L +R
Sbjct: 1399 QKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR 1450
Score = 39 (18.8 bits), Expect = 1.0e-52, Sum P(3) = 1.0e-52
Identities = 14/79 (17%), Positives = 33/79 (41%)
Query: 733 IVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEE 792
+ ++ + GS+ RK D + T K L+ + ++ V ++ +++K +
Sbjct: 1316 LTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRD 1375
Query: 793 SIPQDLSSRPPPIHSKRRN 811
S D P ++ R+
Sbjct: 1376 S---DAGPSTPTTSTRSRD 1391
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 338 (124.0 bits), Expect = 2.5e-53, Sum P(3) = 2.5e-53
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 797
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 798 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 857 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 915
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 916 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 972
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 973 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 1011
Score = 314 (115.6 bits), Expect = 2.5e-53, Sum P(3) = 2.5e-53
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 1059 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 1113
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVI 608
+ +G+ + RLDG+T + R L+ FN S+ +FL+STRAGGLGLNL SA+ V+I
Sbjct: 1114 DYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVII 1173
Query: 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGK 667
FD +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 1174 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM 1233
Query: 668 LEKR 671
+++
Sbjct: 1234 FDQK 1237
Score = 45 (20.9 bits), Expect = 2.5e-53, Sum P(3) = 2.5e-53
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 787 QRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLAR 838
Q+K+ + LS PP + K + ++D + +S + + L +R
Sbjct: 1411 QKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR 1462
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 351 (128.6 bits), Expect = 2.8e-53, Sum P(3) = 2.8e-53
Identities = 104/293 (35%), Positives = 155/293 (52%)
Query: 357 ERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLI 416
+R H +++ ++LRR K E + L KE+ V FC MS+ Q+ Y LL +++
Sbjct: 636 DRITHAKLIMKPFILRRVKSEVLKQLP-AKEEQVEFCAMSERQQELYSALLH--KLKHSS 692
Query: 417 NKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFC-LVLPCLVKLQQISNHLELIKPNPRD- 474
N + LT V + L + P KL+ +S L L +P+ RD
Sbjct: 693 NGEK-----RELTNV-----MMQLRKMSNHPLLHRQFYTTEKLKAMSK-LMLKEPSHRDA 741
Query: 475 EPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDK 534
+P ++D E+ S F +A +E + + GK+ L +L+ S KGD+
Sbjct: 742 DPALIKEDMEVLSD-FELHRLCQQYSALHEYQLNTDVLLDSGKLSLLTQLLNSLKEKGDR 800
Query: 535 ILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594
++LFS MLDILE FL + ++RLDGSTP + R L+D FN+ VFL+STRAG
Sbjct: 801 VVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNTDQDIFVFLLSTRAG 860
Query: 595 GLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEE 647
GLG+NL SAN V++ D + NP D QA+ R R GQ + V V +L+S S+E+
Sbjct: 861 GLGINLTSANVVILHDIDCNPYNDKQAEGRCHRVGQTKTVKVIKLISKDSIED 913
Score = 294 (108.6 bits), Expect = 2.8e-53, Sum P(3) = 2.8e-53
Identities = 87/282 (30%), Positives = 143/282 (50%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L +Q G+ +L L++NK GIL D+MGLGKTIQ I+FLA ++ E +
Sbjct: 428 QLKPYQLIGLNWLVLLHQNKLSGILADEMGLGKTIQAISFLAHLY--QEGNH-------- 477
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPNRDMILEKLEACG--VE--VLI 250
G LI P+S + NW E + W +F V +Y+G D + E VE +++
Sbjct: 478 ----GPHLITVPASTLDNWVRELNLWCPSFKVLVYYGSADDRKYMRYEILNQIVEYNIIV 533
Query: 251 TSFD---SYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQ 307
++++ S+ ++ E + DE H LKN S Y + + + R+ LTGT +Q
Sbjct: 534 STYNLAIGNSSDRSLFCKLKLEYAVFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQ 593
Query: 308 NKIMELYNLFDWVAPG--SLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365
N ++EL +L +++ P S T + + F +K + ++ ER +R H +
Sbjct: 594 NNLLELMSLLNFIMPNMFSSSTSQIAKMF---SMKSSEEQSSFER------DRITHAKLI 644
Query: 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
++ ++LRR K E + L KE+ V FC MS+ Q+ Y LL
Sbjct: 645 MKPFILRRVKSEVLKQLP-AKEEQVEFCAMSERQQELYSALL 685
Score = 50 (22.7 bits), Expect = 7.0e-28, Sum P(3) = 7.0e-28
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 307 QNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIR-IADERKQHLVAV 365
+N++ ++ DW+ +L T F + E + + P + R +A+ R Q V
Sbjct: 193 KNELRDVLQEHDWLIDDALETLRMFSDLVVESEDDSSQTSTPAKHTRRVAETRPQAQVTK 252
Query: 366 L 366
L
Sbjct: 253 L 253
Score = 40 (19.1 bits), Expect = 2.8e-53, Sum P(3) = 2.8e-53
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 761 SKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSS 800
SK +ED + R + + Q +E+++P D+++
Sbjct: 907 SKDSIEDTMLRIGERKLKLEQEMTATQDGEEDTLPDDMTT 946
Score = 38 (18.4 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 336 DEPLKHGQRLTAPERFIRIADERKQHL 362
D+ + GQR ER +R + HL
Sbjct: 165 DDSEEEGQRSKDQERMLRKLQRKFPHL 191
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 334 (122.6 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 67/162 (41%), Positives = 106/162 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ + ++L+FS R+LDILE +L+ +GY + R+DG+T + R
Sbjct: 491 VTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDER 550
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ ++ +N S++ VFL+STRAGGLG+NL +A+ V+++D +WNP DLQAQDR+ R GQ
Sbjct: 551 DASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQ 610
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKLEKR 671
K+ V VFR + ++E V R K L + + G+L ++
Sbjct: 611 KKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRLAEQ 652
Score = 307 (113.1 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 91/287 (31%), Positives = 145/287 (50%)
Query: 126 IIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDES 185
++ PA I +L ++Q G+ +L +LY+N GIL D+MGLGKT+QTI+ LA
Sbjct: 183 LLTQPACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLA-------- 234
Query: 186 SDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTF--NVSIYHGPN-RDMILEKLE 242
L + + G +++ P S + NW E R+ V P R I E+L
Sbjct: 235 ----YLHEYR-GINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELL 289
Query: 243 ACG-VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
G ++ +TSF+ + L +W +I+DEAHR+KNE S L T R+ +
Sbjct: 290 VAGKFDICVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLI 349
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361
TGT +QN + EL+ L +++ P + E F E++ ++ Q+ E Q
Sbjct: 350 TGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQ------------EVVQQ 397
Query: 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L VLR +LLRR K + + + K++ ++ MS +QK+ Y+ LLQ
Sbjct: 398 LHKVLRPFLLRRLKSD-VEKGLPPKKETILKVGMSQMQKQYYKALLQ 443
Score = 41 (19.5 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 456 VKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDID 495
V+ ++++++ +IK R E RKD E+ A+ G +D
Sbjct: 894 VRYKELNDYDRIIKNIERGEARISRKD-EIMKAI-GKKLD 931
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 355 (130.0 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 85/207 (41%), Positives = 123/207 (59%)
Query: 498 GGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGY 557
GG+ + S + + S GK+ L+KL+ ++L+FS VRMLDIL ++L +G+
Sbjct: 922 GGDINDNSKLD-KIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGF 980
Query: 558 SFSRLDGSTPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPA 616
F RLDGST + LRQ +D FN+ S FL+STRAGGLG+NL +A+ VVIFD +WNP
Sbjct: 981 QFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQ 1040
Query: 617 QDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-----GKLEKR 671
DLQA R+ R GQ+ V ++R +++ S+EE + R K L ++ + G+LEKR
Sbjct: 1041 NDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEGRLEKR 1100
Query: 672 YFE-GVQ-DCKEFQGEL-FGICNLFRD 695
+ G D E L FG LF++
Sbjct: 1101 ETKKGSNFDKNELSAILRFGAEELFKE 1127
Score = 291 (107.5 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 86/283 (30%), Positives = 147/283 (51%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q EG+ FL + N IL D+MGLGKT+Q+++ L + N
Sbjct: 625 LRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFL-------------QNTQ 671
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMIL------EKLEACGVE 247
G L++ P S + NW EF +W N+ +Y G +R++ EK ++
Sbjct: 672 QIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVCQQYEFYNEKKVGRPIK 731
Query: 248 --VLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTI 305
L+T+++ ++LS++ W ++VDEAHRLKN +++LY A LE T+N++ +TGT
Sbjct: 732 FNALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTP 791
Query: 306 MQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365
+QN + EL+ L ++ PG ++ F E Y K+ E +A+ HL
Sbjct: 792 LQNSVEELWALLHFLDPGKFKNKDEFVENY----KNLSSFNESE----LAN---LHLE-- 838
Query: 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
LR ++LRR ++ + + K + ++ MS LQK+ Y+ +L+
Sbjct: 839 LRPHILRRVIKD-VEKSLPPKIERILRVEMSPLQKQYYKWILE 880
Score = 38 (18.4 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 459 QQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFI 507
+++ N+ + + R R++ E+ D+D++ N+Q E I
Sbjct: 491 KKVLNYTKKVTEEIRYRTALSREEIEVNDVSKEMDLDIIKQNSQVERII 539
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 369 (135.0 bits), Expect = 3.3e-53, Sum P(3) = 3.3e-53
Identities = 75/164 (45%), Positives = 110/164 (67%)
Query: 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSR 561
+N + LS ++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L K Y F R
Sbjct: 777 ENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQR 836
Query: 562 LDGSTPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
LDGS +R+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQ
Sbjct: 837 LDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQ 896
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
AQ R+ R GQK+ V ++RL++ G++EE + R K L ++ +
Sbjct: 897 AQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 940
Score = 279 (103.3 bits), Expect = 3.3e-53, Sum P(3) = 3.3e-53
Identities = 79/250 (31%), Positives = 132/250 (52%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N L ++Q EG+ +L + + IL D+MGLGKTIQTI+FL+ +F + +
Sbjct: 481 NLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY------- 533
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEAC 244
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + +
Sbjct: 534 ------GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRL 587
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
LIT+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT
Sbjct: 588 KFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGT 647
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRL-TAPERFI--RIADERKQ 360
+QN + EL++L ++ P E F E + + ++G Q L E F+ R+ + ++
Sbjct: 648 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEK 707
Query: 361 HLVAVLRKYL 370
L A + + L
Sbjct: 708 SLPAKVEQIL 717
Score = 236 (88.1 bits), Expect = 1.0e-48, Sum P(3) = 1.0e-48
Identities = 66/217 (30%), Positives = 113/217 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVEVLI 250
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + + LI
Sbjct: 534 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310
T+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +QN +
Sbjct: 594 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSL 653
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L ++ P E + +F ++ HG+ + Q L VL +L
Sbjct: 654 KELWSLLHFIMPEKF---EFWEDFEED---HGKG----------RENGYQSLHKVLEPFL 697
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 698 LRRVKKD-VEKSLPAKVEQILRVEMSALQKQYYKWIL 733
Score = 43 (20.2 bits), Expect = 3.3e-53, Sum P(3) = 3.3e-53
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAV 489
L +++L++ NH LIKP P +E +++ L S +
Sbjct: 752 LNIVMELKKCCNHCYLIKP-P-EENERENGQEVLLSLI 787
Score = 38 (18.4 bits), Expect = 3.9e-28, Sum P(3) = 3.9e-28
Identities = 26/108 (24%), Positives = 40/108 (37%)
Query: 262 ILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMEL-YNLFDWV 320
+ SE+N + IV+ +K KS L +R K M L Y+ W
Sbjct: 369 LASELNKQYQIVERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWE 428
Query: 321 APGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRK 368
+G + F+ D T P R + +R + VA L+K
Sbjct: 429 DEALIGKK--FQSCIDSFHSRNNSKTIPTRECKALKQRPR-FVA-LKK 472
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 351 (128.6 bits), Expect = 3.5e-53, Sum P(3) = 3.5e-53
Identities = 103/280 (36%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
IN L +Q +G++++ LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 694 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 741
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V I Y G P R ++ +L + VL
Sbjct: 742 EHK-RLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVL 800
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL RI LTGT +Q
Sbjct: 801 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQ 859
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+R+ E I R+ H VL
Sbjct: 860 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET-ILIIRRLH--KVL 916
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQK YR +
Sbjct: 917 RPFLLRRLKKEVESQLPE-KVEYVIKCDMSALQKILYRHM 955
Score = 298 (110.0 bits), Expect = 3.5e-53, Sum P(3) = 3.5e-53
Identities = 61/161 (37%), Positives = 98/161 (60%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ + ++LLF ++ I+E + + + + RLDG+T S R
Sbjct: 1021 RASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA 1080
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+L+ FN S+ +FL+STRAGGLGLNL +A+ V+IFD +WNP QDLQAQDR+ R GQ+
Sbjct: 1081 ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1140
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V V RL + S+EE + YK + + +G +++
Sbjct: 1141 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1181
Score = 45 (20.9 bits), Expect = 3.5e-53, Sum P(3) = 3.5e-53
Identities = 33/143 (23%), Positives = 57/143 (39%)
Query: 737 KDSNTLLSTGSKTRKSSDPEMARTSKP--LLEDMGIVYAHRNDDIVNKQPGFQRKKEESI 794
KDS +K R+ P + P L + M + D ++N + R+ E
Sbjct: 1328 KDSGKEDGEKAKKRRGRPPAEKLSPNPPKLTKQMNAII----DTVINYKDSSGRQLSEVF 1383
Query: 795 PQDLSSRP--PPIHSKRRNLLDCADGKESLASSKDRK--NIEYSLLA--------RFMGM 842
Q L SR P + R +D KE + + K R ++E ++ G
Sbjct: 1384 IQ-LPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGS 1442
Query: 843 DVFEFSKWILSATPSAREKLLQD 865
++E S + S SAR+K+ ++
Sbjct: 1443 QIYEDSIVLQSVFKSARQKIAKE 1465
Score = 38 (18.4 bits), Expect = 1.9e-52, Sum P(3) = 1.9e-52
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 776 NDDIVNKQPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRK 829
+D + KQ + R E+ +++ KRR +D GKE +K R+
Sbjct: 1291 SDALTEKQ--WLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDSGKEDGEKAKKRR 1342
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 329 (120.9 bits), Expect = 4.4e-53, Sum P(2) = 4.4e-53
Identities = 66/146 (45%), Positives = 96/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
++S GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y + R+DG NLR
Sbjct: 1231 IQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLR 1290
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1291 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1350
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ R K
Sbjct: 1351 NKAVKVYRLITRNSYEREMFDRASLK 1376
Score = 322 (118.4 bits), Expect = 4.4e-53, Sum P(2) = 4.4e-53
Identities = 94/287 (32%), Positives = 148/287 (51%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q EGV +L + N+ IL D+MGLGKTIQ+I FL ++ +
Sbjct: 913 LRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIY--------------RT 958
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC---------G 245
KG LII P S I NWE EF W+ NV +YHG +R M+ + C G
Sbjct: 959 GIKGPFLIIAPLSTIANWEREFRTWTHLNVIVYHGSVVSRQMLQQYEMYCRDSQGRVIRG 1018
Query: 246 V---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
+ +IT+F+ L+ ++W VI+DEAHRLKN+ KL + +++ LT
Sbjct: 1019 AYRFQAVITTFEMILGGCPELNAIDWRCVIIDEAHRLKNKNCKLLEGFKLMSLEHKVLLT 1078
Query: 303 GTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADERKQH 361
GT +QN + EL++L ++ P + F +EF D LK +E+ Q
Sbjct: 1079 GTPLQNTVEELFSLLHFLEPTRFPSENTFMQEFGD--LK--------------TEEQVQK 1122
Query: 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L A+L+ +LRR KE+ + + KE+ ++ ++++QK+ YR +L+
Sbjct: 1123 LQAILKPMMLRRLKED-VEKKLAPKEETIIEVELTNIQKKYYRAILE 1168
Score = 46 (21.3 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 457 KLQQISNHLELIKPNPRDEPDKQRK 481
+ +++ NHL L P PR K+ K
Sbjct: 1621 RTKELQNHLGLSTPVPRGRKGKKMK 1645
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 333 (122.3 bits), Expect = 4.6e-53, Sum P(2) = 4.6e-53
Identities = 61/155 (39%), Positives = 103/155 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+ GK+ AL+ L+ S+G ++L++S RM+D+LE++++ + +++ RLDGS+ + R
Sbjct: 1094 ITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1153
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ +V DF + VFL+STRAGGLG+NL +A+ V+ +D +WNP D QA DR+ R GQ
Sbjct: 1154 RDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1213
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
+ V V+RL+ G++EE + R K ++ + +SG
Sbjct: 1214 KQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1248
Score = 311 (114.5 bits), Expect = 4.6e-53, Sum P(2) = 4.6e-53
Identities = 88/299 (29%), Positives = 148/299 (49%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
I P N +L +Q +G+ +L LY+ GIL D+MGLGKT+Q+IA LA + ++
Sbjct: 510 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIW 569
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRDMILEKL---E 242
G LII P+S + NW EF+R+ F V Y G D +K +
Sbjct: 570 -------------GPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKKKKTLYTQ 616
Query: 243 ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
V+ITS+ V W+ +++DEA LK+ S + L+ + RNR+ LT
Sbjct: 617 DAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLT 676
Query: 303 GTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAPERFIRIADERKQH 361
GT +QN + EL+ L ++ P + E F E++ + ++ H + +A I + +
Sbjct: 677 GTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSA------IDENQLSR 730
Query: 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDL 420
L +L+ ++LRR K++ L K + +++C ++ QK Y+ L I+ L+ +
Sbjct: 731 LHMILKPFMLRRIKKDVENELS-DKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSM 788
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 322 (118.4 bits), Expect = 4.7e-53, Sum P(2) = 4.7e-53
Identities = 69/165 (41%), Positives = 103/165 (62%)
Query: 504 ESF-IGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRL 562
E F IG +++ GK+ L+KL+ SKG ++LLFS +MLDIL+ +L +GYS+ R+
Sbjct: 336 EPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERV 395
Query: 563 DGSTPSNLRQSLVDDFNSSPSKQVF-LISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQA 621
DGS R + +F P +F +STRAGG+G+NL +A+ V+ FD ++NP DLQA
Sbjct: 396 DGSVRGEERHLAIKNFGQQP---IFTFLSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQA 452
Query: 622 QDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
R+ R GQ + V V RL+ ++EE+VY + K QL+N + G
Sbjct: 453 AARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEG 497
Score = 315 (115.9 bits), Expect = 4.7e-53, Sum P(2) = 4.7e-53
Identities = 103/318 (32%), Positives = 158/318 (49%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L +Q +GV +L + + ++G ILGD+MGLGKT QTIA + G+ L D
Sbjct: 48 LRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGR--------LND--- 96
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPN--RDMILEKL-EACGVEVLITS 252
+G LI+CP SV+ NW+ E R++ + Y G R + + L + VL+T+
Sbjct: 97 --EGPFLILCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDLKQESRFHVLLTT 154
Query: 253 FDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIME 312
++ S L W +++VDEAHRLKN+ S L+ E + LTGT +QN + E
Sbjct: 155 YEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQE 214
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLR 372
LY+L +V P L ++E +F QR E+ A E L +L+ +LLR
Sbjct: 215 LYSLLSFVEP-DLFSKEQVEDFV-------QRYQDIEKESESASE----LYKLLQPFLLR 262
Query: 373 RTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLP-CSCGSPLTQV 431
R K E L K + V++ MS LQK+ Y+ +L + ++ N+ + L+Q+
Sbjct: 263 RVKAEVATELPR-KTEVVIYHGMSALQKKYYKAIL-MKDLDAFENEMAKKVKLQNVLSQL 320
Query: 432 ECCKRLDNL-DGCDSCPF 448
C L DG + PF
Sbjct: 321 RKCVDHPYLFDGVEPEPF 338
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 334 (122.6 bits), Expect = 4.8e-53, Sum P(4) = 4.8e-53
Identities = 97/314 (30%), Positives = 164/314 (52%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L E+Q +G++++ L+ N GIL D+MGLGKTIQTI+ L + +++ K+
Sbjct: 781 LKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLL-----------TYLVEVKKI 829
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PNRDMILEK-LEACGVEVLITSF 253
G L+I P S + NW +EF +W+ I Y G PN+ +++ + ++++T+F
Sbjct: 830 P--GPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVLTTF 887
Query: 254 DSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLE-LKTRNRIGLTGTIMQNKIME 312
+ +L + W +I+DE HR+KN SKL + + R+ LTGT +QN + E
Sbjct: 888 EYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPE 947
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKH--GQ---RLTAPERFIRIADERKQHLVAVLR 367
L+ L ++V P + + F E+++ P + GQ LT E + I R+ H VLR
Sbjct: 948 LWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVI---RRLH--KVLR 1002
Query: 368 KYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQC--LINKDLPCSCG 425
+LLRR K++ L K + VV C S LQ + Y+++L+ + N +P +
Sbjct: 1003 PFLLRRLKKDVEKDLP-NKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTIK 1061
Query: 426 SPLTQVECCKRLDN 439
+ Q+ K++ N
Sbjct: 1062 NANNQIMQLKKICN 1075
Score = 325 (119.5 bits), Expect = 4.8e-53, Sum P(4) = 4.8e-53
Identities = 66/158 (41%), Positives = 102/158 (64%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GK L+K++ + + G K+L+F ++++I+E FL +G + RLDG T ++ R L+
Sbjct: 1102 GKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLL 1161
Query: 576 DDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
FN+ S FL+STRAGGLGLNL +A+ V+IFD +WNP QDLQAQDR+ R GQK V
Sbjct: 1162 KSFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEV 1221
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
+ RL++ S+EE++ R K ++ + +GK + +
Sbjct: 1222 RILRLITENSVEEMILERAHKKLEIDGKVIQAGKFDNK 1259
Score = 43 (20.2 bits), Expect = 4.8e-53, Sum P(4) = 4.8e-53
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 738 DSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIP 795
D N +S K P+ R KP + + + D+++ + F ++ IP
Sbjct: 1399 DGNVDMSDSEMEAKPKKPKGRRGRKPKVARVEDEESQTESDVISVKRQFPEDADDFIP 1456
Score = 40 (19.1 bits), Expect = 4.8e-53, Sum P(4) = 4.8e-53
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 40 PRRPPKSSLAQQLQRL 55
P++P K L ++ QRL
Sbjct: 336 PKKPTKKQLREEEQRL 351
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 334 (122.6 bits), Expect = 4.8e-53, Sum P(4) = 4.8e-53
Identities = 97/314 (30%), Positives = 164/314 (52%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L E+Q +G++++ L+ N GIL D+MGLGKTIQTI+ L + +++ K+
Sbjct: 781 LKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLL-----------TYLVEVKKI 829
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PNRDMILEK-LEACGVEVLITSF 253
G L+I P S + NW +EF +W+ I Y G PN+ +++ + ++++T+F
Sbjct: 830 P--GPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVLTTF 887
Query: 254 DSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLE-LKTRNRIGLTGTIMQNKIME 312
+ +L + W +I+DE HR+KN SKL + + R+ LTGT +QN + E
Sbjct: 888 EYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPE 947
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKH--GQ---RLTAPERFIRIADERKQHLVAVLR 367
L+ L ++V P + + F E+++ P + GQ LT E + I R+ H VLR
Sbjct: 948 LWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVI---RRLH--KVLR 1002
Query: 368 KYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQC--LINKDLPCSCG 425
+LLRR K++ L K + VV C S LQ + Y+++L+ + N +P +
Sbjct: 1003 PFLLRRLKKDVEKDLP-NKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTIK 1061
Query: 426 SPLTQVECCKRLDN 439
+ Q+ K++ N
Sbjct: 1062 NANNQIMQLKKICN 1075
Score = 325 (119.5 bits), Expect = 4.8e-53, Sum P(4) = 4.8e-53
Identities = 66/158 (41%), Positives = 102/158 (64%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GK L+K++ + + G K+L+F ++++I+E FL +G + RLDG T ++ R L+
Sbjct: 1102 GKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLL 1161
Query: 576 DDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
FN+ S FL+STRAGGLGLNL +A+ V+IFD +WNP QDLQAQDR+ R GQK V
Sbjct: 1162 KSFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEV 1221
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
+ RL++ S+EE++ R K ++ + +GK + +
Sbjct: 1222 RILRLITENSVEEMILERAHKKLEIDGKVIQAGKFDNK 1259
Score = 43 (20.2 bits), Expect = 4.8e-53, Sum P(4) = 4.8e-53
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 738 DSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIP 795
D N +S K P+ R KP + + + D+++ + F ++ IP
Sbjct: 1399 DGNVDMSDSEMEAKPKKPKGRRGRKPKVARVEDEESQTESDVISVKRQFPEDADDFIP 1456
Score = 40 (19.1 bits), Expect = 4.8e-53, Sum P(4) = 4.8e-53
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 40 PRRPPKSSLAQQLQRL 55
P++P K L ++ QRL
Sbjct: 336 PKKPTKKQLREEEQRL 351
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 338 (124.0 bits), Expect = 4.8e-53, Sum P(2) = 4.8e-53
Identities = 63/155 (40%), Positives = 99/155 (63%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V GK+ L++L+ + G ++LL+ RM+D++E++L + Y + RLDGST R
Sbjct: 1317 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1376
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ V DF P VFL+STRAGGLG+NL +A+ V+ +D +WNP D QA DR+ R GQ
Sbjct: 1377 RDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQT 1436
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
R V V+RL++ ++EE + R + K+++ + +SG
Sbjct: 1437 RQVTVYRLITRSTIEERIRKRALQKEEVQRVVISG 1471
Score = 306 (112.8 bits), Expect = 4.8e-53, Sum P(2) = 4.8e-53
Identities = 89/310 (28%), Positives = 156/310 (50%)
Query: 122 GEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFG 181
G+ I Q P + +L E+Q +G+ +L LY+ GIL D+MGLGKTIQ+I+ +A +
Sbjct: 784 GDIEISQ-PTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYL-- 840
Query: 182 KDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI--YHGPNRDM-IL 238
+ I G L+I P+S + NW+ E +++ N+ + Y G +D IL
Sbjct: 841 ---AEVHNIW--------GPFLVIAPASTLHNWQQEITKFVP-NIKVLPYWGNAKDRKIL 888
Query: 239 EKL---------EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMA 289
K + VL+TS+ + +V W+ +I+DEA +K+ +S + +
Sbjct: 889 RKFWDRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKS 948
Query: 290 CLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAP 348
L RNR+ LTGT +QN + EL+ L ++ P + + F E++ + ++ H Q T
Sbjct: 949 LLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNT-- 1006
Query: 349 ERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
++ +++ + L +L+ ++LRR K+ + + K + VFC ++ Q+ Y L
Sbjct: 1007 ----KLNEDQLRRLHMILKPFMLRRVKKH-VQQELGDKVEKDVFCDLTYRQRALYTNLRN 1061
Query: 409 LPEIQCLINK 418
I LI K
Sbjct: 1062 RVSIMDLIEK 1071
Score = 42 (19.8 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 152 YKNKHGGILGDDMGLGKTIQT--IAFLAAVFGKDESSDSTI 190
+ H G+ + L + QT ++ L+ V+ +DESS +T+
Sbjct: 1146 FNYSHQGVF--ERALRRRGQTNRLSRLSVVYDEDESSTATL 1184
Score = 42 (19.8 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 546 DILEKFLIRKGYSFSRLDGSTPSNLRQSLVDD 577
D+ E+ + +S + + N++QS+ DD
Sbjct: 1098 DLFERAETKSPFSLAHFAETASFNIKQSIEDD 1129
Score = 40 (19.1 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 394 TMSDLQKRAYRRLLQLPEIQCLI 416
T S +++R +R LQ E+Q ++
Sbjct: 1446 TRSTIEERIRKRALQKEEVQRVV 1468
Score = 37 (18.1 bits), Expect = 8.1e-25, Sum P(2) = 8.1e-25
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 112 PFEPLVLSKDGEYPIIQVPA 131
P P +S G Y I+VP+
Sbjct: 1293 PMLPEPISTKGRYTHIEVPS 1312
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 313 (115.2 bits), Expect = 5.2e-53, Sum P(3) = 5.2e-53
Identities = 97/319 (30%), Positives = 160/319 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L LY+N GIL D+MGLGKT+QTIA L LK +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG------------YLKHYR- 232
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRD----MILEKLEACGVEVLIT 251
+ G +++ P S + NW EF RW + V + G ++D I +++ +V +T
Sbjct: 233 NIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVG-DKDARAAFIRDEMMPGEWDVCVT 291
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
S++ S+ + +W +++DEAHR+KNEKSKL + K+ NR+ LTGT +QN +
Sbjct: 292 SYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLH 351
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ L +++ P + E F ++D + ++ + ER L VL+ +LL
Sbjct: 352 ELWALLNFLLPDVFNSAEDFDSWFDT-----KNCLGDQKLV----ER---LHTVLKPFLL 399
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL--INKDLPCSCGSPLT 429
RR K + L KE + + +S +Q+ Y ++L + +I L K + L
Sbjct: 400 RRIKTDVEKSLPPKKEIKI-YLGLSKMQREWYTKIL-MKDIDVLNSAGKMDKMRLLNILM 457
Query: 430 QV-ECCKRLDNLDGCDSCP 447
Q+ +CC DG + P
Sbjct: 458 QLRKCCNHPYLFDGAEPGP 476
Score = 224 (83.9 bits), Expect = 5.2e-53, Sum P(3) = 5.2e-53
Identities = 45/96 (46%), Positives = 68/96 (70%)
Query: 575 VDDFN-SSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633
++ FN + SK +F++STRAGGLG+NL SA+ V+++D +WNP DLQA DR+ R GQK+
Sbjct: 565 IEAFNIPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKP 624
Query: 634 VIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKL 668
V VFRL++ ++EE + R K +L +I + G+L
Sbjct: 625 VRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 660
Score = 151 (58.2 bits), Expect = 5.2e-53, Sum P(3) = 5.2e-53
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GKM L+KL+ +G ++L+FS R+LDILE + + +GY + RLDG TP R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 572 QSLVDDF 578
+ ++ DF
Sbjct: 545 EEILKDF 551
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 331 (121.6 bits), Expect = 5.2e-53, Sum P(2) = 5.2e-53
Identities = 70/175 (40%), Positives = 105/175 (60%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+++ GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y++ R+DG NLR
Sbjct: 701 IQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR 760
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 761 QAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 820
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGE 685
+ V V+RL++ S E ++ + K L + K GVQ + + E
Sbjct: 821 SKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVE 875
Score = 310 (114.2 bits), Expect = 5.2e-53, Sum P(2) = 5.2e-53
Identities = 89/288 (30%), Positives = 149/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL+ +F
Sbjct: 382 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF--------------L 427
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
+ G LII P S I NWE EF W+ N +YHG +R MI ++ E
Sbjct: 428 MGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMI-QQYEMVYRDTQGNPL 486
Query: 245 -GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIG 300
G+ +V+IT+F+ L ++ W V++DEAHRLKN KL + +++
Sbjct: 487 PGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVL 546
Query: 301 LTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQ 360
LTGT +QN + EL++L +++ P + F E + + LK +E+ +
Sbjct: 547 LTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGD-LK--------------TEEQVK 591
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L ++L+ +LRR K++ +L K++ ++ ++++QK+ YR +L+
Sbjct: 592 KLQSILKPMMLRRLKDDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 638
Score = 52 (23.4 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 22/80 (27%), Positives = 32/80 (40%)
Query: 415 LINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLV-KLQQISNHLELIKPNPR 473
L KD+ C + L V C K + S + L+ P + Q + NH L P PR
Sbjct: 1047 LNEKDMEMICRALL--VYCVKHYKGDEKIKSFIWDLITPTKDGQNQALQNHSGLSAPVPR 1104
Query: 474 DEPDKQRKDAELASAVFGPD 493
K+ K+ L + D
Sbjct: 1105 GRKGKKTKNQMLLPEIKNAD 1124
Score = 41 (19.5 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 858 AREKLLQDYRK 868
A EK+L+D+RK
Sbjct: 676 AEEKILEDFRK 686
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 373 (136.4 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 94/284 (33%), Positives = 157/284 (55%)
Query: 128 QVPASINCRLLEHQREGVKFLYKLYK-NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
++P +I L +Q+EGV +L L + N HG IL DDMGLGKT+QTI +A+ +
Sbjct: 1309 KLPVAIKAELRPYQQEGVNWLAFLNRYNLHG-ILCDDMGLGKTLQTICIVAS--DHHMRA 1365
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTF-NVSIYHGPNRDMILEKLEACG 245
+ +K LIICP S+ +W+ E +++ F N Y GP + +
Sbjct: 1366 EDFAKTQRPESRKVPSLIICPPSLSGHWQQEVKQYAPFLNCVAYVGPPAERSKLQGSLAD 1425
Query: 246 VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTI 305
++++TS+D R +L ++W ++DE H +KN K+K+ MA + + +R+ L+GT
Sbjct: 1426 ADIVVTSYDICRNDNDVLRPISWNYCVLDEGHLIKNPKAKVTMAVKRINSNHRLILSGTP 1485
Query: 306 MQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365
+QN ++EL++LFD++ PG LGT + F + + +P+ A RF + + E++ +A+
Sbjct: 1486 IQNNVLELWSLFDFLMPGFLGTEKVFLDRFAKPI-------ATSRFSKSSKEQEAGALAI 1538
Query: 366 --LRK----YLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
L K +LLRR KEE + L N +C S+LQK+ +
Sbjct: 1539 EALHKQVLPFLLRRLKEEVLNDLPPKIIQNY-YCDPSELQKKLF 1581
Score = 271 (100.5 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 55/135 (40%), Positives = 86/135 (63%)
Query: 534 KILLFSYSVRMLDILEKFLIRK---GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590
+ L+F MLDI++ +++K F RLDG+ + RQ +V+ FNS PS V L++
Sbjct: 1687 RALVFCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSDPSYDVLLLT 1746
Query: 591 TRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVY 650
T GGLGLNL A+ V+ + +WNP +D+QA DR+ R GQK+ V V+RL++ G+LEE +
Sbjct: 1747 TSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLEEKIL 1806
Query: 651 TRQVYKQQLSNIAVS 665
Q +K +++ V+
Sbjct: 1807 NLQRFKIDVASTVVN 1821
Score = 39 (18.8 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 783 QPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKE 820
Q Q KK S +D+S P + + + LLDC G E
Sbjct: 1636 QQYLQEKK--SYLRDVS-HAPKLSALKDLLLDCGIGVE 1670
Score = 38 (18.4 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 567 PSNLRQSLVDDFNSSPSK 584
PS L++ L +DF K
Sbjct: 1573 PSELQKKLFEDFTKKEQK 1590
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 341 (125.1 bits), Expect = 5.7e-53, Sum P(2) = 5.7e-53
Identities = 66/166 (39%), Positives = 108/166 (65%)
Query: 505 SFIGLSDVKSC----GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFS 560
SFI + D +S GK+ L+ L+ S+G ++L++S RM+D+LE++++ + +++
Sbjct: 1117 SFIRIPDKESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYM 1176
Query: 561 RLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
RLDGS+ + R+ +V DF S VFL+STRAGGLG+NL +A+ V+ +D +WNP D Q
Sbjct: 1177 RLDGSSKISERRDMVADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1236
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
A DR+ R GQ + V V+RL+ G++EE + R K ++ + +SG
Sbjct: 1237 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1282
Score = 302 (111.4 bits), Expect = 5.7e-53, Sum P(2) = 5.7e-53
Identities = 88/305 (28%), Positives = 149/305 (48%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
I P N +L +Q +G+ +L LY+ GIL D+MGLGKT+Q+IA LA + ++
Sbjct: 509 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIW 568
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHG-PNRDMILEKL--- 241
G LII P+S + NW EFSR+ F V Y G P+ ++ K
Sbjct: 569 -------------GPFLIISPASTLNNWHQEFSRFVPKFKVLPYWGNPHDRKVIRKFWSQ 615
Query: 242 -----EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTR 296
+ V+ITS+ V W+ +++DEA LK+ S + L+ + R
Sbjct: 616 KTLYTQNAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSTSVRWKILLQFQCR 675
Query: 297 NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAPERFIRIA 355
NR+ LTGT +QN + EL+ L ++ P + E F E++ + ++ H + +A I
Sbjct: 676 NRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSA------ID 729
Query: 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL 415
+ + L +L+ ++LRR K++ L K + + +C ++ Q+ Y+ L I+ L
Sbjct: 730 ENQLSRLHMILKPFMLRRIKKDVENELS-DKIEILTYCQLTSRQRLLYQALKNKISIEDL 788
Query: 416 INKDL 420
+ +
Sbjct: 789 LQSSM 793
Score = 48 (22.0 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 556 GYSFSRLDGSTPSNL-RQSLVDDF----NSSPSKQVFLISTRA 593
GYS S+ GS P+ L R S F SSP + ++T +
Sbjct: 1513 GYSVSKASGSLPTALIRSSTTPTFVPAGTSSPQAKSSAVATNS 1555
Score = 47 (21.6 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 330 HFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDN 389
+++++ +H +R R DE + RK T+ E H M GK++
Sbjct: 347 YWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMGGKQNA 406
Query: 390 VVFCTMSDLQKR 401
CT ++ ++
Sbjct: 407 GGDCTQEEILRK 418
Score = 47 (21.6 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 35/136 (25%), Positives = 52/136 (38%)
Query: 523 KLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSP 582
K + + + D+++ VR L+++ FL R + L+ D S
Sbjct: 1017 KFLLAVTPRKDRVVCVCAHVRQLEMILLFLEVTSVPLERYCADRSAEYEWRLMRDGGSLI 1076
Query: 583 SKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDR---SF-RFGQKRHVIVFR 638
+KQ FL G L A R F P NP + Q R SF R K +I
Sbjct: 1077 AKQCFLY----GSPELACAWAQRSQSFLPP-NPGGVMALQQRHGWSFIRIPDKESLIT-- 1129
Query: 639 LLSAGSLE--ELVYTR 652
+G L +L+ TR
Sbjct: 1130 --DSGKLHTLDLLLTR 1143
Score = 44 (20.5 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 640 LSAGSLEELVYTRQVYKQQLSNIAVSGKLEK 670
LS S L ++RQ ++++S + G+LEK
Sbjct: 920 LSFKSAYRLHHSRQWEEEKMSEVKGRGRLEK 950
Score = 38 (18.4 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKR 671
+V LL LE+ + RQ K+QL S K+++R
Sbjct: 1295 VVSLLLDDEELEKKLRLRQEEKRQLEE---SSKVKER 1328
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 369 (135.0 bits), Expect = 6.6e-53, Sum P(3) = 6.6e-53
Identities = 75/164 (45%), Positives = 110/164 (67%)
Query: 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSR 561
+N + LS ++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L K Y F R
Sbjct: 759 ENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQR 818
Query: 562 LDGSTPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
LDGS +R+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQ
Sbjct: 819 LDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQ 878
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
AQ R+ R GQK+ V ++RL++ G++EE + R K L ++ +
Sbjct: 879 AQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 922
Score = 279 (103.3 bits), Expect = 6.6e-53, Sum P(3) = 6.6e-53
Identities = 79/250 (31%), Positives = 132/250 (52%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N L ++Q EG+ +L + + IL D+MGLGKTIQTI+FL+ +F + +
Sbjct: 463 NLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY------- 515
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEAC 244
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + +
Sbjct: 516 ------GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRL 569
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
LIT+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT
Sbjct: 570 KFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 629
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRL-TAPERFI--RIADERKQ 360
+QN + EL++L ++ P E F E + + ++G Q L E F+ R+ + ++
Sbjct: 630 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEK 689
Query: 361 HLVAVLRKYL 370
L A + + L
Sbjct: 690 SLPAKVEQIL 699
Score = 236 (88.1 bits), Expect = 2.0e-48, Sum P(3) = 2.0e-48
Identities = 66/217 (30%), Positives = 113/217 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVEVLI 250
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + + LI
Sbjct: 516 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 575
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310
T+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +QN +
Sbjct: 576 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 635
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L ++ P E + +F ++ HG+ + Q L VL +L
Sbjct: 636 KELWSLLHFIMPEKF---EFWEDFEED---HGKG----------RENGYQSLHKVLEPFL 679
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 680 LRRVKKD-VEKSLPAKVEQILRVEMSALQKQYYKWIL 715
Score = 45 (20.9 bits), Expect = 6.6e-53, Sum P(3) = 6.6e-53
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAV 489
L +++L++ NH LIKP P +E +++ L S +
Sbjct: 734 LNIVMELKKCCNHCHLIKP-P-EENERENGQEVLLSLI 769
Score = 37 (18.1 bits), Expect = 9.9e-28, Sum P(3) = 9.9e-28
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 262 ILSEVNWEIVIVDEAHRLKNEKSKL 286
+ SE+N + IV+ +K KS L
Sbjct: 348 LASELNKQYQIVERVIAVKTSKSTL 372
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 351 (128.6 bits), Expect = 7.4e-53, Sum P(3) = 7.4e-53
Identities = 103/280 (36%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
IN L +Q +G++++ LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 702 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 749
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V I Y G P R ++ +L + VL
Sbjct: 750 EHK-RLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVL 808
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL RI LTGT +Q
Sbjct: 809 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQ 867
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+R+ E I R+ H VL
Sbjct: 868 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET-ILIIRRLH--KVL 924
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQK YR +
Sbjct: 925 RPFLLRRLKKEVESQLPE-KVEYVIKCDMSALQKILYRHM 963
Score = 299 (110.3 bits), Expect = 7.4e-53, Sum P(3) = 7.4e-53
Identities = 62/161 (38%), Positives = 98/161 (60%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ + ++LLF ++ I+E + + + + RLDG+T S R
Sbjct: 1029 RASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA 1088
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+L+ FN S+ +FL+STRAGGLGLNL +A+ VVIFD +WNP QDLQAQDR+ R GQ+
Sbjct: 1089 ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ 1148
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V V RL + S+EE + YK + + +G +++
Sbjct: 1149 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1189
Score = 41 (19.5 bits), Expect = 7.4e-53, Sum P(3) = 7.4e-53
Identities = 30/133 (22%), Positives = 54/133 (40%)
Query: 747 SKTRKSSDPEMARTSKP--LLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRP-- 802
+K R+ P + P L + M + D ++N + R+ E Q L SR
Sbjct: 1346 AKKRRGRPPAEKLSPNPPKLTKQMNAII----DTVINYKDSSGRQLSEVFIQ-LPSRKEL 1400
Query: 803 PPIHSKRRNLLDCADGKESLASSKDRK--NIEYSLLA--------RFMGMDVFEFSKWIL 852
P + R +D KE + + K R ++E ++ G ++E S +
Sbjct: 1401 PEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQ 1460
Query: 853 SATPSAREKLLQD 865
S SAR+K+ ++
Sbjct: 1461 SVFKSARQKIAKE 1473
Score = 37 (18.1 bits), Expect = 6.1e-20, Sum P(3) = 6.1e-20
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 469 KPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQ 502
K R + K ++AE + GPD + + ++Q
Sbjct: 538 KKKRRRKKKKAEENAEGGESALGPDGEPIDESSQ 571
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 351 (128.6 bits), Expect = 7.5e-53, Sum P(3) = 7.5e-53
Identities = 103/280 (36%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
IN L +Q +G++++ LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 751
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V I Y G P R ++ +L + VL
Sbjct: 752 EHK-RLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVL 810
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL RI LTGT +Q
Sbjct: 811 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQ 869
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+R+ E I R+ H VL
Sbjct: 870 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET-ILIIRRLH--KVL 926
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQK YR +
Sbjct: 927 RPFLLRRLKKEVESQLPE-KVEYVIKCDMSALQKILYRHM 965
Score = 299 (110.3 bits), Expect = 7.5e-53, Sum P(3) = 7.5e-53
Identities = 62/161 (38%), Positives = 98/161 (60%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ + ++LLF ++ I+E + + + + RLDG+T S R
Sbjct: 1031 RASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA 1090
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+L+ FN S+ +FL+STRAGGLGLNL +A+ VVIFD +WNP QDLQAQDR+ R GQ+
Sbjct: 1091 ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ 1150
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V V RL + S+EE + YK + + +G +++
Sbjct: 1151 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1191
Score = 41 (19.5 bits), Expect = 7.5e-53, Sum P(3) = 7.5e-53
Identities = 30/133 (22%), Positives = 54/133 (40%)
Query: 747 SKTRKSSDPEMARTSKP--LLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRP-- 802
+K R+ P + P L + M + D ++N + R+ E Q L SR
Sbjct: 1348 AKKRRGRPPAEKLSPNPPKLTKQMNAII----DTVINYKDSSGRQLSEVFIQ-LPSRKEL 1402
Query: 803 PPIHSKRRNLLDCADGKESLASSKDRK--NIEYSLLA--------RFMGMDVFEFSKWIL 852
P + R +D KE + + K R ++E ++ G ++E S +
Sbjct: 1403 PEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQ 1462
Query: 853 SATPSAREKLLQD 865
S SAR+K+ ++
Sbjct: 1463 SVFKSARQKIAKE 1475
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 351 (128.6 bits), Expect = 7.5e-53, Sum P(3) = 7.5e-53
Identities = 103/280 (36%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
IN L +Q +G++++ LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 751
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V I Y G P R ++ +L + VL
Sbjct: 752 EHK-RLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVL 810
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL RI LTGT +Q
Sbjct: 811 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQ 869
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+R+ E I R+ H VL
Sbjct: 870 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET-ILIIRRLH--KVL 926
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQK YR +
Sbjct: 927 RPFLLRRLKKEVESQLPE-KVEYVIKCDMSALQKILYRHM 965
Score = 299 (110.3 bits), Expect = 7.5e-53, Sum P(3) = 7.5e-53
Identities = 62/161 (38%), Positives = 98/161 (60%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ + ++LLF ++ I+E + + + + RLDG+T S R
Sbjct: 1031 RASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA 1090
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+L+ FN S+ +FL+STRAGGLGLNL +A+ VVIFD +WNP QDLQAQDR+ R GQ+
Sbjct: 1091 ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ 1150
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V V RL + S+EE + YK + + +G +++
Sbjct: 1151 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1191
Score = 41 (19.5 bits), Expect = 7.5e-53, Sum P(3) = 7.5e-53
Identities = 30/133 (22%), Positives = 54/133 (40%)
Query: 747 SKTRKSSDPEMARTSKP--LLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRP-- 802
+K R+ P + P L + M + D ++N + R+ E Q L SR
Sbjct: 1348 AKKRRGRPPAEKLSPNPPKLTKQMNAII----DTVINYKDSSGRQLSEVFIQ-LPSRKEL 1402
Query: 803 PPIHSKRRNLLDCADGKESLASSKDRK--NIEYSLLA--------RFMGMDVFEFSKWIL 852
P + R +D KE + + K R ++E ++ G ++E S +
Sbjct: 1403 PEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQ 1462
Query: 853 SATPSAREKLLQD 865
S SAR+K+ ++
Sbjct: 1463 SVFKSARQKIAKE 1475
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 351 (128.6 bits), Expect = 7.9e-53, Sum P(3) = 7.9e-53
Identities = 103/280 (36%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
IN L +Q +G++++ LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 725 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 772
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V I Y G P R ++ +L + VL
Sbjct: 773 EHK-RLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVL 831
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL RI LTGT +Q
Sbjct: 832 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQ 890
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+R+ E I R+ H VL
Sbjct: 891 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET-ILIIRRLH--KVL 947
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQK YR +
Sbjct: 948 RPFLLRRLKKEVESQLPE-KVEYVIKCDMSALQKILYRHM 986
Score = 299 (110.3 bits), Expect = 7.9e-53, Sum P(3) = 7.9e-53
Identities = 62/161 (38%), Positives = 98/161 (60%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ + ++LLF ++ I+E + + + + RLDG+T S R
Sbjct: 1052 RASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA 1111
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+L+ FN S+ +FL+STRAGGLGLNL +A+ VVIFD +WNP QDLQAQDR+ R GQ+
Sbjct: 1112 ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ 1171
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V V RL + S+EE + YK + + +G +++
Sbjct: 1172 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1212
Score = 41 (19.5 bits), Expect = 7.9e-53, Sum P(3) = 7.9e-53
Identities = 30/133 (22%), Positives = 54/133 (40%)
Query: 747 SKTRKSSDPEMARTSKP--LLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRP-- 802
+K R+ P + P L + M + D ++N + R+ E Q L SR
Sbjct: 1369 AKKRRGRPPAEKLSPNPPKLTKQMNAII----DTVINYKDSSGRQLSEVFIQ-LPSRKDL 1423
Query: 803 PPIHSKRRNLLDCADGKESLASSKDRK--NIEYSLLA--------RFMGMDVFEFSKWIL 852
P + R +D KE + + K R ++E ++ G ++E S +
Sbjct: 1424 PEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQ 1483
Query: 853 SATPSAREKLLQD 865
S SAR+K+ ++
Sbjct: 1484 SVFKSARQKIAKE 1496
Score = 38 (18.4 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 455 LVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDI 494
L+ Q L P+ R P Q A+AV GP +
Sbjct: 273 LLSGQSAPQKLSAPAPSGRPSPAPQAAVQPTATAVPGPSV 312
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 369 (135.0 bits), Expect = 8.0e-53, Sum P(3) = 8.0e-53
Identities = 75/164 (45%), Positives = 110/164 (67%)
Query: 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSR 561
+N + LS ++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L K Y F R
Sbjct: 746 ENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQR 805
Query: 562 LDGSTPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
LDGS +R+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQ
Sbjct: 806 LDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQ 865
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
AQ R+ R GQK+ V ++RL++ G++EE + R K L ++ +
Sbjct: 866 AQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 909
Score = 279 (103.3 bits), Expect = 8.0e-53, Sum P(3) = 8.0e-53
Identities = 79/250 (31%), Positives = 132/250 (52%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N L ++Q EG+ +L + + IL D+MGLGKTIQTI+FL+ +F + +
Sbjct: 450 NLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY------- 502
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEAC 244
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + +
Sbjct: 503 ------GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRL 556
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
LIT+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT
Sbjct: 557 KFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGT 616
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRL-TAPERFI--RIADERKQ 360
+QN + EL++L ++ P E F E + + ++G Q L E F+ R+ + ++
Sbjct: 617 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEK 676
Query: 361 HLVAVLRKYL 370
L A + + L
Sbjct: 677 SLPAKVEQIL 686
Score = 236 (88.1 bits), Expect = 2.5e-48, Sum P(3) = 2.5e-48
Identities = 66/217 (30%), Positives = 113/217 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVEVLI 250
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + + LI
Sbjct: 503 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 562
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310
T+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +QN +
Sbjct: 563 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSL 622
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L ++ P E + +F ++ HG+ + Q L VL +L
Sbjct: 623 KELWSLLHFIMPEKF---EFWEDFEED---HGKG----------RENGYQSLHKVLEPFL 666
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 667 LRRVKKD-VEKSLPAKVEQILRVEMSALQKQYYKWIL 702
Score = 43 (20.2 bits), Expect = 8.0e-53, Sum P(3) = 8.0e-53
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAV 489
L +++L++ NH LIKP P +E +++ L S +
Sbjct: 721 LNIVMELKKCCNHCYLIKP-P-EENERENGQEVLLSLI 756
Score = 39 (18.8 bits), Expect = 7.5e-28, Sum P(3) = 7.5e-28
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 273 VDEAHRLKNEKSKLYMACLELKTRNR-IGLTG--TIMQNKIMEL--YNL--FDWVA 321
+D H N K+ C LK R R + L T + + +EL Y L +W+A
Sbjct: 410 IDSFHSRNNSKTIPTRECKALKQRPRFVALKKQPTYLGGENLELRDYQLEGLNWLA 465
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 336 (123.3 bits), Expect = 8.8e-53, Sum P(3) = 8.8e-53
Identities = 97/279 (34%), Positives = 146/279 (52%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N +L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 762 VNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 809
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
+ K G LII P S + NW EF +W+ V + Y G P R L L + VL
Sbjct: 810 EFK-RLNGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAFLPILRSGKFNVL 868
Query: 250 ITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQN 308
+T+++ +L+++ W+ +IVDE HR+KN KL R+ LTGT +QN
Sbjct: 869 VTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQN 928
Query: 309 KIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVLR 367
K+ EL+ L +++ P + F ++++ P G+++ E I R+ H VLR
Sbjct: 929 KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVLR 985
Query: 368 KYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
+LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 986 PFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 1023
Score = 308 (113.5 bits), Expect = 8.8e-53, Sum P(3) = 8.8e-53
Identities = 66/166 (39%), Positives = 102/166 (61%)
Query: 510 SDV-KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPS 568
SD+ ++ GK L++++ + K+LLF ++ I+E + + + + RLDG+T +
Sbjct: 1085 SDLYRASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKA 1144
Query: 569 NLRQSLVDDFNSSPSKQ--VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSF 626
R L+ +FN PS Q +FL+STRAGGLGLNL SA+ V+IFD +WNP QDLQAQDR+
Sbjct: 1145 EDRGMLLKNFND-PSHQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAH 1203
Query: 627 RFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
R GQ+ V V RL + S+EE + YK + + +G +++
Sbjct: 1204 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1249
Score = 48 (22.0 bits), Expect = 8.8e-53, Sum P(3) = 8.8e-53
Identities = 21/90 (23%), Positives = 40/90 (44%)
Query: 733 IVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLE--DMGIVYAHRNDDIVNKQPGFQRKK 790
+ ++ + GS+ RK D + T K L+ + G + +++ +K+ +RK+
Sbjct: 1336 LTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTL-DEIEEEVRHKKTTRKRKR 1394
Query: 791 EESIPQDLSSRPPPIHSKRRNLLDCADGKE 820
+ + DL P S R D DGK+
Sbjct: 1395 DRDL--DLPGPATPSSSGRSRDKD-DDGKK 1421
Score = 40 (19.1 bits), Expect = 6.0e-52, Sum P(3) = 6.0e-52
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 787 QRKKEESIPQDLSSRPPPIHSKRRNLLD 814
Q+K+ + LS PP + K + +D
Sbjct: 1422 QKKRGRPPAEKLSPNPPSLTKKMKKTVD 1449
Score = 39 (18.8 bits), Expect = 9.1e-22, Sum P(3) = 9.1e-22
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 455 LVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPD 493
L +L + + +K + + K+ ++AE + GPD
Sbjct: 582 LTELVRAHKAAQALKDKKKKKKKKKPENAEGGAPALGPD 620
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 342 (125.4 bits), Expect = 9.4e-53, Sum P(2) = 9.4e-53
Identities = 101/280 (36%), Positives = 147/280 (52%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
IN L +Q +G++++ LY N GIL D+MG GKTIQTIA + T L
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGPGKTIQTIALI------------TYLM 774
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V I Y G P R ++ +L + L
Sbjct: 775 EHK-GLNGPYLIIVPLSTLSNWTYEFDKWAPSAVKISYKGTPAMRRSLVPQLRSGKFNAL 833
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL RI LTGT +Q
Sbjct: 834 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQ 892
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+R+ E I R+ H VL
Sbjct: 893 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET-ILIIRRLH--KVL 949
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQK YR +
Sbjct: 950 RPFLLRRLKKEVESQLPE-KVEYVIKCDMSALQKILYRHM 988
Score = 299 (110.3 bits), Expect = 9.4e-53, Sum P(2) = 9.4e-53
Identities = 62/161 (38%), Positives = 98/161 (60%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ + ++LLF ++ I+E + + + + RLDG+T S R
Sbjct: 1054 RASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA 1113
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+L+ FN S+ +FL+STRAGGLGLNL +A+ VVIFD +WNP QDLQAQDR+ R GQ+
Sbjct: 1114 ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ 1173
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V V RL + S+EE + YK + + +G +++
Sbjct: 1174 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1214
Score = 37 (18.1 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 455 LVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDI 494
L+ Q L P+ R P A+AV GP +
Sbjct: 275 LMTAQNTQRKLSAPAPSGRPSPAPPAATQPTATAVPGPSV 314
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 370 (135.3 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 76/164 (46%), Positives = 110/164 (67%)
Query: 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSR 561
+N I LS ++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L K Y F R
Sbjct: 777 ENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQR 836
Query: 562 LDGSTPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
LDGS +R+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQ
Sbjct: 837 LDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQ 896
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
AQ R+ R GQK+ V ++RL++ G++EE + R K L ++ +
Sbjct: 897 AQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 940
Score = 279 (103.3 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 79/250 (31%), Positives = 132/250 (52%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N L ++Q EG+ +L + + IL D+MGLGKTIQTI+FL+ +F + +
Sbjct: 481 NLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLY------- 533
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEAC 244
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + +
Sbjct: 534 ------GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRL 587
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
LIT+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT
Sbjct: 588 KFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 647
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRL-TAPERFI--RIADERKQ 360
+QN + EL++L ++ P E F E + + ++G Q L E F+ R+ + ++
Sbjct: 648 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEK 707
Query: 361 HLVAVLRKYL 370
L A + + L
Sbjct: 708 SLPAKVEQIL 717
Score = 236 (88.1 bits), Expect = 3.4e-48, Sum P(3) = 3.4e-48
Identities = 66/217 (30%), Positives = 113/217 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVEVLI 250
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + + LI
Sbjct: 534 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310
T+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +QN +
Sbjct: 594 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 653
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L ++ P E + +F ++ HG+ + Q L VL +L
Sbjct: 654 KELWSLLHFIMPEKF---EFWEDFEED---HGKG----------RENGYQSLHKVLEPFL 697
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 698 LRRVKKD-VEKSLPAKVEQILRVEMSALQKQYYKWIL 733
Score = 42 (19.8 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDE 475
L +++L++ NH LIKP +E
Sbjct: 752 LNIVMELKKCCNHCYLIKPPEENE 775
Score = 38 (18.4 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 26/108 (24%), Positives = 40/108 (37%)
Query: 262 ILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMEL-YNLFDWV 320
+ SE+N + IV+ +K KS L +R K M L Y+ W
Sbjct: 369 LASELNKQYQIVERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWE 428
Query: 321 APGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRK 368
+G + F+ D T P R + +R + VA L+K
Sbjct: 429 DEALIGKK--FQNCIDSFHSRNNSKTIPTRECKALKQRPR-FVA-LKK 472
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 369 (135.0 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 75/164 (45%), Positives = 110/164 (67%)
Query: 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSR 561
+N + LS ++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L K Y F R
Sbjct: 780 ENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQR 839
Query: 562 LDGSTPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
LDGS +R+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQ
Sbjct: 840 LDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQ 899
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
AQ R+ R GQK+ V ++RL++ G++EE + R K L ++ +
Sbjct: 900 AQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 943
Score = 279 (103.3 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 79/250 (31%), Positives = 132/250 (52%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N L ++Q EG+ +L + + IL D+MGLGKTIQTI+FL+ +F + +
Sbjct: 484 NLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY------- 536
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEAC 244
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + +
Sbjct: 537 ------GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRL 590
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
LIT+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT
Sbjct: 591 KFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGT 650
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRL-TAPERFI--RIADERKQ 360
+QN + EL++L ++ P E F E + + ++G Q L E F+ R+ + ++
Sbjct: 651 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEK 710
Query: 361 HLVAVLRKYL 370
L A + + L
Sbjct: 711 SLPAKVEQIL 720
Score = 236 (88.1 bits), Expect = 3.4e-48, Sum P(3) = 3.4e-48
Identities = 66/217 (30%), Positives = 113/217 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVEVLI 250
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + + LI
Sbjct: 537 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 596
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310
T+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +QN +
Sbjct: 597 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSL 656
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L ++ P E + +F ++ HG+ + Q L VL +L
Sbjct: 657 KELWSLLHFIMPEKF---EFWEDFEED---HGKG----------RENGYQSLHKVLEPFL 700
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 701 LRRVKKD-VEKSLPAKVEQILRVEMSALQKQYYKWIL 736
Score = 43 (20.2 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAV 489
L +++L++ NH LIKP P +E +++ L S +
Sbjct: 755 LNIVMELKKCCNHCYLIKP-P-EENERENGQEVLLSLI 790
Score = 39 (18.8 bits), Expect = 1.0e-27, Sum P(3) = 1.0e-27
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 273 VDEAHRLKNEKSKLYMACLELKTRNR-IGLTG--TIMQNKIMEL--YNL--FDWVA 321
+D H N K+ C LK R R + L T + + +EL Y L +W+A
Sbjct: 444 IDSFHSRNNSKTIPTRECKALKQRPRFVALKKQPTYLGGENLELRDYQLEGLNWLA 499
Score = 37 (18.1 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 262 ILSEVNWEIVIVDEAHRLKNEKSKL 286
+ SE+N + IV+ +K KS L
Sbjct: 369 LASELNKQYQIVERVIAVKTSKSTL 393
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 369 (135.0 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 75/164 (45%), Positives = 110/164 (67%)
Query: 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSR 561
+N + LS ++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L K Y F R
Sbjct: 790 ENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQR 849
Query: 562 LDGSTPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
LDGS +R+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQ
Sbjct: 850 LDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQ 909
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
AQ R+ R GQK+ V ++RL++ G++EE + R K L ++ +
Sbjct: 910 AQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 953
Score = 279 (103.3 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 79/250 (31%), Positives = 132/250 (52%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N L ++Q EG+ +L + + IL D+MGLGKTIQTI+FL+ +F + +
Sbjct: 494 NLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY------- 546
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEAC 244
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + +
Sbjct: 547 ------GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRL 600
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
LIT+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT
Sbjct: 601 KFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGT 660
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRL-TAPERFI--RIADERKQ 360
+QN + EL++L ++ P E F E + + ++G Q L E F+ R+ + ++
Sbjct: 661 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEK 720
Query: 361 HLVAVLRKYL 370
L A + + L
Sbjct: 721 SLPAKVEQIL 730
Score = 236 (88.1 bits), Expect = 3.5e-48, Sum P(3) = 3.5e-48
Identities = 66/217 (30%), Positives = 113/217 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVEVLI 250
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + + LI
Sbjct: 547 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 606
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310
T+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +QN +
Sbjct: 607 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSL 666
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L ++ P E + +F ++ HG+ + Q L VL +L
Sbjct: 667 KELWSLLHFIMPEKF---EFWEDFEED---HGKG----------RENGYQSLHKVLEPFL 710
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 711 LRRVKKD-VEKSLPAKVEQILRVEMSALQKQYYKWIL 746
Score = 43 (20.2 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAV 489
L +++L++ NH LIKP P +E +++ L S +
Sbjct: 765 LNIVMELKKCCNHCYLIKP-P-EENERENGQEVLLSLI 800
Score = 38 (18.4 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 26/108 (24%), Positives = 40/108 (37%)
Query: 262 ILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMEL-YNLFDWV 320
+ SE+N + IV+ +K KS L +R K M L Y+ W
Sbjct: 382 LASELNKQYQIVERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWE 441
Query: 321 APGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRK 368
+G + F+ D T P R + +R + VA L+K
Sbjct: 442 DEALIGKK--FQSCIDSFHSRNNSKTIPTRECKALKQRPR-FVA-LKK 485
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 332 (121.9 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 70/175 (40%), Positives = 105/175 (60%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+++ GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y++ R+DG NLR
Sbjct: 779 IQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR 838
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 839 QAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 898
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGE 685
+ V V+RL++ S E ++ + K L + K GVQ + + E
Sbjct: 899 SKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVE 953
Score = 314 (115.6 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 92/287 (32%), Positives = 150/287 (52%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL+ +F L+
Sbjct: 460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF----------LRGIH 509
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMI--LEKL--EACG---- 245
G LII P S I NWE EF W+ N +YHG +R MI E + +A G
Sbjct: 510 ----GPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLS 565
Query: 246 ----VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
V+IT+F+ L +++W VI+DEAHRLKN KL + +++ L
Sbjct: 566 GVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLL 625
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361
TGT +QN + EL++L +++ P + F E + + LK +E+ +
Sbjct: 626 TGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGD-LK--------------TEEQVKK 670
Query: 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L ++L+ +LRR K++ +L K++ ++ ++++QK+ YR +L+
Sbjct: 671 LQSILKPMMLRRLKDDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 716
Score = 50 (22.7 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 415 LINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLV-KLQQISNHLELIKPNPR 473
L KD+ C + L V C K + S + L+ P + Q + NH L P PR
Sbjct: 1125 LNEKDMEMICRALL--VYCVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPR 1182
Query: 474 DEPDKQRKD 482
K+ K+
Sbjct: 1183 GRKGKKTKN 1191
Score = 41 (19.5 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 858 AREKLLQDYRK 868
A EK+L+D+RK
Sbjct: 754 AEEKILEDFRK 764
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 332 (121.9 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 70/175 (40%), Positives = 105/175 (60%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+++ GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y++ R+DG NLR
Sbjct: 779 IQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR 838
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 839 QAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 898
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGE 685
+ V V+RL++ S E ++ + K L + K GVQ + + E
Sbjct: 899 SKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVE 953
Score = 314 (115.6 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 92/287 (32%), Positives = 150/287 (52%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL+ +F L+
Sbjct: 460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF----------LRGIH 509
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMI--LEKL--EACG---- 245
G LII P S I NWE EF W+ N +YHG +R MI E + +A G
Sbjct: 510 ----GPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLS 565
Query: 246 ----VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
V+IT+F+ L +++W VI+DEAHRLKN KL + +++ L
Sbjct: 566 GVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLL 625
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361
TGT +QN + EL++L +++ P + F E + + LK +E+ +
Sbjct: 626 TGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGD-LK--------------TEEQVKK 670
Query: 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L ++L+ +LRR K++ +L K++ ++ ++++QK+ YR +L+
Sbjct: 671 LQSILKPMMLRRLKDDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 716
Score = 50 (22.7 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 415 LINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLV-KLQQISNHLELIKPNPR 473
L KD+ C + L V C K + S + L+ P + Q + NH L P PR
Sbjct: 1125 LNEKDMEMICRALL--VYCVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPR 1182
Query: 474 DEPDKQRKD 482
K+ K+
Sbjct: 1183 GRKGKKTKN 1191
Score = 41 (19.5 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 858 AREKLLQDYRK 868
A EK+L+D+RK
Sbjct: 754 AEEKILEDFRK 764
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 332 (121.9 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 70/175 (40%), Positives = 105/175 (60%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+++ GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y++ R+DG NLR
Sbjct: 778 IQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR 837
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 838 QAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 897
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGE 685
+ V V+RL++ S E ++ + K L + K GVQ + + E
Sbjct: 898 SKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVE 952
Score = 314 (115.6 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 92/287 (32%), Positives = 150/287 (52%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL+ +F L+
Sbjct: 459 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF----------LRGIH 508
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMI--LEKL--EACG---- 245
G LII P S I NWE EF W+ N +YHG +R MI E + +A G
Sbjct: 509 ----GPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLS 564
Query: 246 ----VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
V+IT+F+ L +++W VI+DEAHRLKN KL + +++ L
Sbjct: 565 GVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLL 624
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361
TGT +QN + EL++L +++ P + F E + + LK +E+ +
Sbjct: 625 TGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGD-LK--------------TEEQVKK 669
Query: 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L ++L+ +LRR K++ +L K++ ++ ++++QK+ YR +L+
Sbjct: 670 LQSILKPMMLRRLKDDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 715
Score = 50 (22.7 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 415 LINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLV-KLQQISNHLELIKPNPR 473
L KD+ C + L V C K + S + L+ P + Q + NH L P PR
Sbjct: 1124 LNEKDMEMICRALL--VYCVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPR 1181
Query: 474 DEPDKQRKD 482
K+ K+
Sbjct: 1182 GRKGKKTKN 1190
Score = 41 (19.5 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 858 AREKLLQDYRK 868
A EK+L+D+RK
Sbjct: 753 AEEKILEDFRK 763
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 342 (125.4 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 98/281 (34%), Positives = 155/281 (55%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q +G++++ L+ N GIL D+MGLGKTIQTI+ L T L + K
Sbjct: 767 LKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLL------------TYLYEMK- 813
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHG-PN-RDMILEKLEACGVEVLITSF 253
+ +G L+I P S + NW EF++W+ T + G PN R K+ A +V++T+F
Sbjct: 814 NIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTF 873
Query: 254 DSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQNKIME 312
+ ++LS+V W +I+DE HR+KN +SKL + R+ LTGT +QN + E
Sbjct: 874 EYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPE 933
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKH--GQ---RLTAPERFIRIADERKQHLVAVLR 367
L+ L ++V P + + F E+++ P + GQ L+ E + I R+ H VLR
Sbjct: 934 LWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVI---RRLH--KVLR 988
Query: 368 KYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
+LLRR K++ L K + VV C MS LQ+ Y+++L+
Sbjct: 989 PFLLRRLKKDVEKELP-DKVEKVVKCKMSALQQIMYQQMLK 1028
Score = 312 (114.9 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 64/158 (40%), Positives = 100/158 (63%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GK L++++ + G ++L+F +++DI+E FL + RLDG T S+ R L+
Sbjct: 1087 GKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELL 1146
Query: 576 DDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
FN+ S+ + F++STRAGGLGLNL +A+ V+IFD +WNP QDLQAQDR+ R GQK V
Sbjct: 1147 RLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEV 1206
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
+ RL++ S+EE++ R K + + +GK + +
Sbjct: 1207 RILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNK 1244
Score = 40 (19.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 472 PRDEPDKQRKD-AELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGK 517
PR P K + + +E + + G N+ +E F+ + ++ GK
Sbjct: 1448 PRGRPKKVKLEGSENSEPPALESSPVTGDNSPSEDFMDIPKPRTAGK 1494
Score = 37 (18.1 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 14/67 (20%), Positives = 26/67 (38%)
Query: 728 GLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQ 787
G E S+ + G++ RK++ + + L + +ND KQ +
Sbjct: 1332 GAELKREESESAAVYNGRGARERKTATYNDNMSEEQWLRQFEVSDDEKNDKQARKQRTKK 1391
Query: 788 RKKEESI 794
K E+I
Sbjct: 1392 EDKSEAI 1398
Score = 37 (18.1 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILL 537
V C KM AL+++MY K ++ +
Sbjct: 1010 VVKC-KMSALQQIMYQQMLKYRRLFI 1034
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 320 (117.7 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 68/171 (39%), Positives = 110/171 (64%)
Query: 501 AQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR-KGYSF 559
A++ S I + V + GKM L++L+ +KG KIL+FS LDIL+ + + ++
Sbjct: 611 AEDPSSIDETLVTASGKMLLLDRLIPCLLNKGHKILIFSQFKTQLDILQDWATHLRSWNC 670
Query: 560 SRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDL 619
R+DG+ RQ+ + FN+ ++FL+STRAGG G+NLV+A+ V++FD +WNP QDL
Sbjct: 671 CRIDGAISQADRQAQIKAFNTDKDYKIFLLSTRAGGQGINLVAADTVILFDSDWNPQQDL 730
Query: 620 QAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKLE 669
QAQDR+ R GQ + VIV+RL + G++E+ + + K++L + + GK +
Sbjct: 731 QAQDRAHRIGQTKPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFK 781
Score = 312 (114.9 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 104/360 (28%), Positives = 166/360 (46%)
Query: 64 PQQNPETRREKAPVEKSNVFDDXXXXXXXXXXXFGRHQLGQFQFDHTGP-FE--PLVLSK 120
P ++ R KAP K N + ++ Q +H FE P VL +
Sbjct: 128 PAKSKRGRGRKAPA-KGNTISNYFKKADLNVDE-AKNTTVQEALEHAADEFEAKPTVLGE 185
Query: 121 DGEYPIIQVPASINC-RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179
E Q PA + ++ ++Q EG+++L L+ N GIL D+MGLGKT+Q I+ +A
Sbjct: 186 Q-ELVATQQPAPVTGGKMRKYQLEGLEWLKSLWMNGLCGILADEMGLGKTVQAISLIA-- 242
Query: 180 FGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRD--- 235
K++ V G LI P S + NW EF+RW+ +YHG RD
Sbjct: 243 ----------FFKEHNVS--GPFLISAPLSTVSNWVDEFARWTPGIKTVLYHG-TRDERA 289
Query: 236 ------MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMA 289
M L ++ V+ TS++ L++ W +IVDE HRLKN +L
Sbjct: 290 QLRKKFMNLRDQKSPDFPVVCTSYEICMNDRKFLAQYQWRYIIVDEGHRLKNMNCRLIKE 349
Query: 290 CLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYD--EPLKHGQRLTA 347
L + NR+ +TGT +QN I EL++L ++ P F+ ++D L + +
Sbjct: 350 LLSYNSANRLLITGTPLQNNITELWSLLHFLLPEIFNDLNSFQNWFDFSSVLDNNGQTDM 409
Query: 348 PERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
ER R H ++L+ +LLRR K + + + K + +++ ++ QK YR +L
Sbjct: 410 IERRKRTLVST-MH--SILKPFLLRRVKTD-VESALPKKREYILYAPLTLEQKDLYREIL 465
Score = 39 (18.8 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 524 LMYSWASKG--DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPS 568
++Y A+KG ++ LL + LE+ +I+KG S L ST S
Sbjct: 746 IVYRLATKGTVEQTLLEKADSKRR--LERLVIQKGKFKSLLSESTMS 790
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 317 (116.6 bits), Expect = 1.7e-52, Sum P(2) = 1.7e-52
Identities = 67/164 (40%), Positives = 102/164 (62%)
Query: 504 ESF-IGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRL 562
E F +G ++ GK+ L+KL+ S G ++LLFS +MLDIL+ ++ +GYS+ R+
Sbjct: 334 EPFEVGDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERV 393
Query: 563 DGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQ 622
DGS R + +F P VFL+STRAGG+G+NL +A+ V+ D ++NP DLQA
Sbjct: 394 DGSVRGEERHLAIKNFGQQPIF-VFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAA 452
Query: 623 DRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
R+ R GQ + V V RL+ ++EE+VY + K QL+N+ + G
Sbjct: 453 ARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496
Score = 315 (115.9 bits), Expect = 1.7e-52, Sum P(2) = 1.7e-52
Identities = 104/318 (32%), Positives = 158/318 (49%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L +Q EGV +L + + ++G ILGD+MGLGKT QTIA + G+ L D
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGR--------LND--- 94
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPN--RDMILEKL-EACGVEVLITS 252
+G LI+CP SV+ NW+ E R++ + Y G R + + L + VL+T+
Sbjct: 95 --EGPFLILCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESRFHVLLTT 152
Query: 253 FDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIME 312
++ S L W +++VDEAHRLKN+ S L+ E + LTGT +QN + E
Sbjct: 153 YEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQE 212
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLR 372
LY+L +V P L ++E +F QR E+ A E L +L+ +LLR
Sbjct: 213 LYSLLSFVEP-DLFSKEEVGDFI-------QRYQDIEKESESASE----LHKLLQPFLLR 260
Query: 373 RTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLP-CSCGSPLTQV 431
R K E L K + V++ MS LQK+ Y+ +L + ++ N+ + L+Q+
Sbjct: 261 RVKAEVATELPK-KTEVVIYHGMSALQKKYYKAIL-MKDLDAFENETAKKVKLQNILSQL 318
Query: 432 ECCKRLDNL-DGCDSCPF 448
C L DG + PF
Sbjct: 319 RKCVDHPYLFDGVEPEPF 336
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 328 (120.5 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
Identities = 61/176 (34%), Positives = 108/176 (61%)
Query: 492 PDIDLVGGNAQNESFIG-LSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEK 550
P + G+ N L + GK+ L+KL+ + ++L++ RM+D++E+
Sbjct: 1404 PSFGIAKGSYSNVRIPSMLRFIADSGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEE 1463
Query: 551 FLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFD 610
+L + Y + RLDGS+ + R+ +V ++ + P VFL+STRAGGLG+NL +A+ V+ +D
Sbjct: 1464 YLTFRQYKYLRLDGSSKISQRRDMVTEWQTRPELFVFLLSTRAGGLGINLTAADTVIFYD 1523
Query: 611 PNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
+WNP+ D QA DR+ R GQ++ V V+R ++ G++EE + R K+++ + +SG
Sbjct: 1524 SDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISG 1579
Score = 311 (114.5 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
Identities = 88/304 (28%), Positives = 152/304 (50%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
++ P + C+L E+Q +G+ +L LY+ GIL D+MGLGKT+Q+I+ +A + +
Sbjct: 832 VKQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYL-----AE 886
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHGPNRDM-ILEKL--- 241
I G L+I P+S + NW+ E +R+ I Y G +D IL K
Sbjct: 887 THNIW--------GPFLVIAPASTLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCR 938
Query: 242 ------EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKT 295
E V++TS+ + V W+ +I+DEA +K+ S + + L K
Sbjct: 939 KNMTYDENSPFHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKC 998
Query: 296 RNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAPERFIRI 354
RNR+ LTGT +QN + EL+ L ++ P + F E++ + ++ H Q T ++
Sbjct: 999 RNRLLLTGTPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNT------QL 1052
Query: 355 ADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQC 414
+++ + L +L+ ++LRR K+ L K + V+C ++ QK Y+ L + I
Sbjct: 1053 NEQQLKRLHMILKPFMLRRVKKNVQSELGE-KIEKEVYCDLTQRQKILYQALRRQISIAE 1111
Query: 415 LINK 418
L+ K
Sbjct: 1112 LLEK 1115
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 331 (121.6 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 70/175 (40%), Positives = 105/175 (60%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+++ GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y++ R+DG NLR
Sbjct: 576 IQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR 635
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 636 QAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 695
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGE 685
+ V V+RL++ S E ++ + K L + K GVQ + + E
Sbjct: 696 SKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVE 750
Score = 310 (114.2 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 89/288 (30%), Positives = 149/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL+ +F
Sbjct: 257 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF--------------L 302
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
+ G LII P S I NWE EF W+ N +YHG +R MI ++ E
Sbjct: 303 MGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMI-QQYEMVYRDTQGNPL 361
Query: 245 -GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIG 300
G+ +V+IT+F+ L ++ W V++DEAHRLKN KL + +++
Sbjct: 362 PGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVL 421
Query: 301 LTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQ 360
LTGT +QN + EL++L +++ P + F E + + LK +E+ +
Sbjct: 422 LTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGD-LK--------------TEEQVK 466
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L ++L+ +LRR K++ +L K++ ++ ++++QK+ YR +L+
Sbjct: 467 KLQSILKPMMLRRLKDDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 513
Score = 52 (23.4 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 22/80 (27%), Positives = 32/80 (40%)
Query: 415 LINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLV-KLQQISNHLELIKPNPR 473
L KD+ C + L V C K + S + L+ P + Q + NH L P PR
Sbjct: 922 LNEKDMEMICRALL--VYCVKHYKGDEKIKSFIWDLITPTKDGQNQALQNHSGLSAPVPR 979
Query: 474 DEPDKQRKDAELASAVFGPD 493
K+ K+ L + D
Sbjct: 980 GRKGKKTKNQMLLPEIKNAD 999
Score = 41 (19.5 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 858 AREKLLQDYRK 868
A EK+L+D+RK
Sbjct: 551 AEEKILEDFRK 561
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 331 (121.6 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 70/175 (40%), Positives = 105/175 (60%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+++ GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y++ R+DG NLR
Sbjct: 576 IQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR 635
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 636 QAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 695
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGE 685
+ V V+RL++ S E ++ + K L + K GVQ + + E
Sbjct: 696 SKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVE 750
Score = 310 (114.2 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 89/288 (30%), Positives = 149/288 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL+ +F
Sbjct: 257 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF--------------L 302
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLEAC--------- 244
+ G LII P S I NWE EF W+ N +YHG +R MI ++ E
Sbjct: 303 MGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMI-QQYEMVYRDTQGNPL 361
Query: 245 -GV---EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIG 300
G+ +V+IT+F+ L ++ W V++DEAHRLKN KL + +++
Sbjct: 362 PGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVL 421
Query: 301 LTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQ 360
LTGT +QN + EL++L +++ P + F E + + LK +E+ +
Sbjct: 422 LTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGD-LK--------------TEEQVK 466
Query: 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L ++L+ +LRR K++ +L K++ ++ ++++QK+ YR +L+
Sbjct: 467 KLQSILKPMMLRRLKDDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 513
Score = 52 (23.4 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 22/80 (27%), Positives = 32/80 (40%)
Query: 415 LINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLV-KLQQISNHLELIKPNPR 473
L KD+ C + L V C K + S + L+ P + Q + NH L P PR
Sbjct: 922 LNEKDMEMICRALL--VYCVKHYKGDEKIKSFIWDLITPTKDGQNQALQNHSGLSAPVPR 979
Query: 474 DEPDKQRKDAELASAVFGPD 493
K+ K+ L + D
Sbjct: 980 GRKGKKTKNQMLLPEIKNAD 999
Score = 41 (19.5 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 858 AREKLLQDYRK 868
A EK+L+D+RK
Sbjct: 551 AEEKILEDFRK 561
>DICTYBASE|DDB_G0288873 [details] [associations]
symbol:pich "polo-interacting checkpoint helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0288873 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000125 RefSeq:XP_636560.1
EnsemblProtists:DDB0233442 GeneID:8626845 KEGG:ddi:DDB_G0288873
InParanoid:Q54IB7 OMA:DYGHEEE Uniprot:Q54IB7
Length = 1332
Score = 336 (123.3 bits), Expect = 2.0e-52, Sum P(3) = 2.0e-52
Identities = 78/212 (36%), Positives = 128/212 (60%)
Query: 474 DEPDKQRKDAELASAVFGPDI-DLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKG 532
D P R++ ++ S D+ VGG++++ + + V + GK + L KL+ + G
Sbjct: 767 DHPHLLREEMKMISLDEMKDLLSKVGGSSRSINSL----VNNSGKFQLLLKLLPNLHQDG 822
Query: 533 DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNL-RQSLVDDFNSSPSKQVFLIST 591
++L+FS SV+ML+ E L G ++ R+DGS S RQ ++D +N+ S F+++
Sbjct: 823 HRVLMFSQSVKMLEDFEILLDHLGLTYLRIDGSISSTKKRQEIIDLYNTDMSYFAFIMTI 882
Query: 592 RAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYT 651
+ G LGLNL SA+RV+I DP+WN D QA DR++R GQK+ V+V+RL+S G++EE +Y
Sbjct: 883 QVGALGLNLTSADRVLILDPSWNTI-DNQAVDRAYRIGQKKDVVVYRLMSCGTIEEKIYR 941
Query: 652 RQVYKQQLSNIAVSGKL--EKRYFEGVQDCKE 681
+QV+K L ++ + + RYF D +E
Sbjct: 942 KQVFKGSLMKTMLNNTMSGQHRYFSS-NDLRE 972
Score = 276 (102.2 bits), Expect = 2.0e-52, Sum P(3) = 2.0e-52
Identities = 77/270 (28%), Positives = 141/270 (52%)
Query: 119 SKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAA 178
SK+G+Y ++ I L +QR+GV +L+ L+ GGILGDDMGLGKT+Q +FL +
Sbjct: 377 SKEGKY--FKMKDKIYDGLYWYQRDGVNWLWNLFCRHAGGILGDDMGLGKTMQICSFLNS 434
Query: 179 VFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPN---R 234
+ + S + L++ P +I++W EF+R++ + V ++HG N R
Sbjct: 435 MHSQGHIS--------------HTLLVMPVGLIEHWLKEFNRFNPKYLVRVFHGNNTIER 480
Query: 235 DMILEK-LEACGVEV-----LITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYM 288
+ L++ + G+ + ++++ DS +G W+ VI+DE H++K K+++
Sbjct: 481 NKSLKRVMNEGGIIITTYGMVVSNVDSMIENGR--KSFIWDYVILDEGHKIKETKTQISK 538
Query: 289 ACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSL-GTREHFREFYDEPLKHGQRLTA 347
+++I LTGT +QN + EL+ LFDWV +L G+ +F + +P+ +
Sbjct: 539 TMHRFNAKHKIILTGTAIQNNLRELWALFDWVCGSTLLGSVRNFTANFSKPIIKAHTSDS 598
Query: 348 PERFIRIADERKQHLVAVLRKYLLRRTKEE 377
+ + L ++ + LRR K++
Sbjct: 599 SQDQKITGSAIAEDLRNIIAPHFLRREKKD 628
Score = 73 (30.8 bits), Expect = 2.0e-52, Sum P(3) = 2.0e-52
Identities = 21/89 (23%), Positives = 44/89 (49%)
Query: 349 ERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
E + +++++ + +A +K L+++ G + K D VV+ ++D Q YR L+
Sbjct: 683 EEEVEVSEDKSGNKIATPKK-LVKKRMSMVGGGIKTRKNDFVVWTKLADSQIELYRTFLE 741
Query: 409 LPEIQCLINKDLPCSCGSPLTQVECCKRL 437
E++ +NK SPL + K++
Sbjct: 742 SDEVKDALNKTQ-----SPLAALTVLKKI 765
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 378 (138.1 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 93/281 (33%), Positives = 159/281 (56%)
Query: 128 QVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAA-VFGKDESS 186
++P +I L ++Q++GV +L L K GIL DDMGLGKT+QTI +A+ + + E
Sbjct: 1263 KLPIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKEDY 1322
Query: 187 DSTILKDNKVDKKGYV-LIICPSSVIQNWEIEFSRWSTF-NVSIYHGPNRDMILEKLEAC 244
+ T V+ + LIICP S+ +WE EF +++ F V +Y G + + +
Sbjct: 1323 EKT----RSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTLRPQLS 1378
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
++++TS+D R ++L++ + ++DE H +KN +SKL A E+ +R+ LTGT
Sbjct: 1379 DADIIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGT 1438
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPL--KHGQRLTAPERFIRIADERKQHL 362
+QN ++EL++LFD++ PG LGT + F+E + +P+ + ++ E+ + H
Sbjct: 1439 PIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHK 1498
Query: 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
VL ++LRR KE+ + L K +C + DLQK+ Y
Sbjct: 1499 -QVL-PFMLRRLKEDVLSDLPP-KIIQDYYCELGDLQKQLY 1536
Score = 260 (96.6 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 54/135 (40%), Positives = 82/135 (60%)
Query: 534 KILLFSYSVRMLDILEKFLIRK---GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590
+ L+F MLD++E L +K ++ RLDGS RQ +V FN PS L++
Sbjct: 1648 RALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLT 1707
Query: 591 TRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVY 650
T+ GGLGLNL A+ V+ + +WNP DLQA DR+ R GQK+ V V+R+++ G+LEE +
Sbjct: 1708 TKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIM 1767
Query: 651 TRQVYKQQLSNIAVS 665
Q +K +++ V+
Sbjct: 1768 GLQKFKMNIASTVVN 1782
Score = 39 (18.8 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 150 KLYKNKHGGILG 161
K+++ HGG+LG
Sbjct: 418 KIWEATHGGLLG 429
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 338 (124.0 bits), Expect = 2.1e-52, Sum P(3) = 2.1e-52
Identities = 99/280 (35%), Positives = 149/280 (53%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
+N L ++Q +G+++L LY N GIL D+MGLGKTIQTIA + T L
Sbjct: 742 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI------------TYLM 789
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
++K G LII P S + NW EF +W+ V + Y G P R + +L + VL
Sbjct: 790 EHK-RINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVL 848
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
+T+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 849 LTTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 907
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+++ E I R+ H VL
Sbjct: 908 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET-ILIIRRLH--KVL 964
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS LQ+ YR +
Sbjct: 965 RPFLLRRLKKEVEAQLPE-KVEYVIKCDMSALQRVLYRHM 1003
Score = 305 (112.4 bits), Expect = 2.1e-52, Sum P(3) = 2.1e-52
Identities = 68/183 (37%), Positives = 103/183 (56%)
Query: 490 FGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549
F + GG Q GL ++ GK L++++ + K+LLF ++ I+E
Sbjct: 1051 FSEHLGFTGGIVQ-----GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIME 1105
Query: 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIF 609
+ +G+ + RLDG+T + R L+ FN S+ L+STRAGGLGLNL SA+ V+IF
Sbjct: 1106 DYFAYRGFKYLRLDGTTKAEDRGMLLT-FNEPGSEYFILLSTRAGGLGLNLQSADTVIIF 1164
Query: 610 DPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKL 668
D +WNP QDLQAQDR+ R GQ+ V V RL + S+EE + YK + + +G
Sbjct: 1165 DSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMF 1224
Query: 669 EKR 671
+++
Sbjct: 1225 DQK 1227
Score = 45 (20.9 bits), Expect = 2.1e-52, Sum P(3) = 2.1e-52
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 787 QRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKDRKNIEYSLLAR 838
Q+K+ + LS PP + K + ++D + +S + + L +R
Sbjct: 1397 QKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR 1448
Score = 39 (18.8 bits), Expect = 8.9e-52, Sum P(3) = 8.9e-52
Identities = 14/79 (17%), Positives = 33/79 (41%)
Query: 733 IVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEE 792
+ ++ + GS+ RK D + T K L+ + ++ V ++ +++K +
Sbjct: 1314 LTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRD 1373
Query: 793 SIPQDLSSRPPPIHSKRRN 811
S D P ++ R+
Sbjct: 1374 S---DAGPSTPTTSTRSRD 1389
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 327 (120.2 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 90/279 (32%), Positives = 147/279 (52%)
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
VP I +L E+Q G+ ++ LY+ GIL D+MGLGKTIQTI+ LA + S+S
Sbjct: 550 VPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHM----ACSES 605
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPNRDMILEK---LEAC 244
G LI+ P+SVI NWE+EF +W + Y G ++ ++ ++
Sbjct: 606 IW---------GPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRKGWMKPN 656
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
V ITS+ + + W+ +I+DEA +KN KS+ + A L ++ R R+ LTGT
Sbjct: 657 CFHVCITSYKTVTQDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGT 716
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364
+QN +MEL++L ++ P + + F++++ PL G E + L
Sbjct: 717 PLQNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLT-GMM----EGNMEFNAPLIGRLHK 771
Query: 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
VLR ++LRR K+E + + K +++V C++S Q+ Y
Sbjct: 772 VLRPFILRRLKKE-VEKQLPEKTEHIVNCSLSKRQRYLY 809
Score = 325 (119.5 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 63/173 (36%), Positives = 104/173 (60%)
Query: 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
CGK++ L L+ + L+F+ +MLD+L+ FL GY + RLDG+T RQ++
Sbjct: 1187 CGKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAM 1246
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
++ FN+ P F++STR+GG+G+NL A+ V+ +D +WNP D QAQDR R GQ R+V
Sbjct: 1247 MERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNV 1306
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKLEKRYFEGVQDCKE-FQGE 685
++RL+S ++EE + + K++L +A+ +F+ ++ F GE
Sbjct: 1307 SIYRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRDLFDGE 1359
Score = 42 (19.8 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 451 VLPCLVKLQQISNHLELIKPNP 472
VL +++L++ NH L +P P
Sbjct: 830 VLNIVMQLRKCCNHPNLFEPRP 851
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 330 (121.2 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 67/146 (45%), Positives = 95/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
++S GK+ ++KL+ + G K+L+FS VR LDILE +LI K Y + R+DG NLR
Sbjct: 1178 IQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLR 1237
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1238 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1297
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ R K
Sbjct: 1298 NKAVKVYRLVTRNSYEREMFDRASLK 1323
Score = 313 (115.2 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 95/289 (32%), Positives = 148/289 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL + +L
Sbjct: 859 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI----------LL---- 904
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLE----------- 242
+G LII P S I NWE EF W+ NV +YHG +R MI ++ E
Sbjct: 905 TGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMI-QQYEMYFRDSQGRII 963
Query: 243 --ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIG 300
A + +IT+F+ L+ + W VI+DEAHRLKN+ KL + +++
Sbjct: 964 RGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1023
Query: 301 LTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI-ADERK 359
LTGT +QN + EL++L HF E PL+ T + F + +E+
Sbjct: 1024 LTGTPLQNTVEELFSLL------------HFLE----PLRFPSESTFMQEFGDLKTEEQV 1067
Query: 360 QHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
Q L A+L+ +LRR KE+ + + KE+ ++ ++++QK+ YR +L+
Sbjct: 1068 QKLQAILKPMMLRRLKED-VEKKLAPKEETIIEVELTNIQKKYYRAILE 1115
Score = 43 (20.2 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 459 QQISNHLELIKPNPRDEPDKQRK 481
+++ NHL L P PR K+ K
Sbjct: 1566 RELQNHLGLSAPVPRGRKGKKVK 1588
Score = 40 (19.1 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 280 KNEKSKLYMACLELKTRNRIG 300
K++ SK C +LK + +IG
Sbjct: 575 KDKDSKKTKTCSKLKEKTKIG 595
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 330 (121.2 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 67/146 (45%), Positives = 95/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
++S GK+ ++KL+ + G K+L+FS VR LDILE +LI K Y + R+DG NLR
Sbjct: 1179 IQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLR 1238
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1239 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1298
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ R K
Sbjct: 1299 NKAVKVYRLVTRNSYEREMFDRASLK 1324
Score = 313 (115.2 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 95/289 (32%), Positives = 148/289 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL + +L
Sbjct: 860 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI----------LL---- 905
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLE----------- 242
+G LII P S I NWE EF W+ NV +YHG +R MI ++ E
Sbjct: 906 TGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMI-QQYEMYFRDSQGRII 964
Query: 243 --ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIG 300
A + +IT+F+ L+ + W VI+DEAHRLKN+ KL + +++
Sbjct: 965 RGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1024
Query: 301 LTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI-ADERK 359
LTGT +QN + EL++L HF E PL+ T + F + +E+
Sbjct: 1025 LTGTPLQNTVEELFSLL------------HFLE----PLRFPSESTFMQEFGDLKTEEQV 1068
Query: 360 QHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
Q L A+L+ +LRR KE+ + + KE+ ++ ++++QK+ YR +L+
Sbjct: 1069 QKLQAILKPMMLRRLKED-VEKKLAPKEETIIEVELTNIQKKYYRAILE 1116
Score = 47 (21.6 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 19/81 (23%), Positives = 34/81 (41%)
Query: 280 KNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPL 339
K+++SK C +LK + +IG + K D ++ T+ F+E D
Sbjct: 576 KDKESKKTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMTQHAFKE-EDSQK 634
Query: 340 KHGQRLTAPERFIRIADERKQ 360
+ R +++ A E KQ
Sbjct: 635 RRSNRQIKRKKYAEDA-EGKQ 654
Score = 43 (20.2 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 459 QQISNHLELIKPNPRDEPDKQRK 481
+++ NHL L P PR K+ K
Sbjct: 1567 RELQNHLGLSAPVPRGRKGKKVK 1589
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 330 (121.2 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 67/146 (45%), Positives = 95/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
++S GK+ ++KL+ + G K+L+FS VR LDILE +LI K Y + R+DG NLR
Sbjct: 1180 IQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLR 1239
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1240 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1299
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ R K
Sbjct: 1300 NKAVKVYRLVTRNSYEREMFDRASLK 1325
Score = 313 (115.2 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 95/289 (32%), Positives = 148/289 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL + +L
Sbjct: 861 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI----------LL---- 906
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLE----------- 242
+G LII P S I NWE EF W+ NV +YHG +R MI ++ E
Sbjct: 907 TGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMI-QQYEMYFRDSQGRII 965
Query: 243 --ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIG 300
A + +IT+F+ L+ + W VI+DEAHRLKN+ KL + +++
Sbjct: 966 RGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1025
Query: 301 LTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI-ADERK 359
LTGT +QN + EL++L HF E PL+ T + F + +E+
Sbjct: 1026 LTGTPLQNTVEELFSLL------------HFLE----PLRFPSESTFMQEFGDLKTEEQV 1069
Query: 360 QHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
Q L A+L+ +LRR KE+ + + KE+ ++ ++++QK+ YR +L+
Sbjct: 1070 QKLQAILKPMMLRRLKED-VEKKLAPKEETIIEVELTNIQKKYYRAILE 1117
Score = 43 (20.2 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 459 QQISNHLELIKPNPRDEPDKQRK 481
+++ NHL L P PR K+ K
Sbjct: 1568 RELQNHLGLSAPVPRGRKGKKVK 1590
Score = 42 (19.8 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 280 KNEKSKLYMACLELKTRNRIG 300
K+++SK C +LK + +IG
Sbjct: 577 KDKESKKTKTCSKLKEKTKIG 597
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 341 (125.1 bits), Expect = 3.3e-52, Sum P(2) = 3.3e-52
Identities = 63/166 (37%), Positives = 108/166 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+ K+R L++L+ S+G ++L++ +M+D++E++L + Y+ RLDGS+ R
Sbjct: 1295 ITESAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDR 1354
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ LV D+ ++P VFL+STRAGGLG+NL +A+ V+ +D +WNP D QA DR+ R GQ
Sbjct: 1355 RDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQT 1414
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQ 677
R V V+RLL G++EE + R K+Q+ + + GK +++ + ++
Sbjct: 1415 RQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIKTIE 1460
Score = 294 (108.6 bits), Expect = 3.3e-52, Sum P(2) = 3.3e-52
Identities = 95/354 (26%), Positives = 164/354 (46%)
Query: 66 QNPETRREKAPVEKSNVFDDXXXXXXXXXXXFGRHQLGQFQFDHTGPFEPLVLSKDGEYP 125
+N E R +A SN + H+ + + D P L GE
Sbjct: 640 ENDEQLRLRAAENASNALAETRAKAKQFDDHANAHEEEEEE-DELNFQNPTSL---GEIT 695
Query: 126 IIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDES 185
I Q P + C L E+Q +G+ +L LY GIL D+MGLGKT+Q+I+ LA
Sbjct: 696 IEQ-PKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAH------- 747
Query: 186 SDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRDM-ILEKL-- 241
L +N + G L++ P+S + NW E S++ F + Y G D +L K
Sbjct: 748 -----LAENH-NIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRKFWD 801
Query: 242 -------EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELK 294
+ V++TS+ + L ++ W+ +I+DEA +K+ +S + L
Sbjct: 802 RKNLRYNKNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFH 861
Query: 295 TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAPERFIR 353
RNR+ LTGT +QN + EL+ L ++ P + + F E++ + ++ H + T +
Sbjct: 862 CRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIESHAEANT------K 915
Query: 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNV-VFCTMSDLQKRAYRRL 406
+ ++ + L +L+ ++LRR K+ L G + + V C ++ Q + Y+ L
Sbjct: 916 LNQQQLRRLHMILKPFMLRRVKKNVQSEL--GDKIEIDVLCDLTQRQAKLYQVL 967
Score = 43 (20.2 bits), Expect = 7.2e-26, Sum P(2) = 7.2e-26
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 208 SSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVN 267
SSVI N + S S+ N+S +G D+I + ++ IL N
Sbjct: 1047 SSVISNSNMNLSSMSSNNIS--NGKFTDLIYSSRNPIKYSLPRLIYEDL-----ILPNYN 1099
Query: 268 WEIVIVDEAHRLKNEKSKLY 287
+ VD A++LKN K ++
Sbjct: 1100 ND---VDIANKLKNVKFNIF 1116
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 331 (121.6 bits), Expect = 3.3e-52, Sum P(3) = 3.3e-52
Identities = 99/275 (36%), Positives = 145/275 (52%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L +Q +GVK+L KN+ G ILGD+MGLGKT QTI+ LA G LK N
Sbjct: 35 LRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLLAYARGS--------LKMN-- 84
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPN--RDMILEKLEACG-VEVLITS 252
G L++CP +V++NW E R+ + +V Y G R + + L++ VL+T+
Sbjct: 85 ---GPFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAELQQNLKSDPRFHVLLTT 141
Query: 253 FDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIME 312
++ L W+I++VDEAHRLKN++S L+ E R+ LTGT +QN + E
Sbjct: 142 YEMCLKDARYLKSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQE 201
Query: 313 LYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLR 372
+Y+L ++ P S+ E +F + + T P + DE Q VL+ +LLR
Sbjct: 202 VYSLLTFIQP-SVFLPEAVEDFVNA---YADIQTEPA----LVDELHQ----VLQPFLLR 249
Query: 373 RTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
R K E L K + VVF +S LQKR Y+ +L
Sbjct: 250 RVKAEVAAELPK-KTELVVFHGLSALQKRYYKAIL 283
Score = 303 (111.7 bits), Expect = 3.3e-52, Sum P(3) = 3.3e-52
Identities = 63/153 (41%), Positives = 97/153 (63%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V++ GK+ L+ ++ G +LLFS RMLDIL+ +L +GYS+ RLDGS R
Sbjct: 332 VEASGKLSLLDSMLAYLQEGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEER 391
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ +F S+ +FL+ST+AGG+G+NL +A+ V+ D ++NP DLQA R+ R GQ
Sbjct: 392 NLAIKNF-STKDVFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQT 450
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
R V V RLL ++EE++Y+R V K +L++ +
Sbjct: 451 RPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVI 483
Score = 44 (20.5 bits), Expect = 3.3e-52, Sum P(3) = 3.3e-52
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 731 THIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPG 785
+H S ++T + SK SS E +S P G+ + ++ PG
Sbjct: 873 SHATVSSTASTTTPSSSKPAASSPSESPHSSSPPANREGLTKSAELSTTSHEGPG 927
Score = 40 (19.1 bits), Expect = 7.3e-25, Sum P(3) = 7.3e-25
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 542 VRML--DILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPS 583
+R+L D +E+ + + S RL + R SL+D S+ S
Sbjct: 456 IRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQAQSAAS 499
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 321 (118.1 bits), Expect = 3.4e-52, Sum P(3) = 3.4e-52
Identities = 63/160 (39%), Positives = 96/160 (60%)
Query: 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
CGK++ L L+ G + L+F+ ++LD+LE+FL GY + RLDG+T RQ L
Sbjct: 1245 CGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQIL 1304
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
+ FN+ VF++S+R+GGLG+NL A+ V+ +D +WNPA D Q QDR R GQ R V
Sbjct: 1305 TERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDV 1364
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKLEKRYF 673
++R +S ++E + + K+QL N+ + G YF
Sbjct: 1365 HIYRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTDYF 1404
Score = 316 (116.3 bits), Expect = 3.4e-52, Sum P(3) = 3.4e-52
Identities = 92/292 (31%), Positives = 153/292 (52%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
+ VP+ + L +Q++G+ +L LY N GIL D+MGLGKTIQTI+ LA + +
Sbjct: 686 VPVPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACE---- 741
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHG-PNRDMILEK--LE 242
K+N G LI+ P+SV+ NWE+EF R++ F V Y+G P + K +
Sbjct: 742 -----KENW----GPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRKGWNK 792
Query: 243 ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
V I S+ W+ +++DEAH +KN +S + A L T+ R+ LT
Sbjct: 793 PDAFHVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLT 852
Query: 303 GTIMQNKIMELYNLFDWVAPGSL--GTR-------EHFREFYDEPLKHGQRLTAPERFIR 353
GT +QN + EL++L ++ P ++ G + + F++++ P+ + + + F +
Sbjct: 853 GTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVD--KIIETGQNFGQ 910
Query: 354 IADERKQ--HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
+ +K L VLR YLLRR K + + M K +++V+C +S Q+ Y
Sbjct: 911 DKETKKTVAKLHQVLRPYLLRRLKAD-VEKQMPAKYEHIVYCKLSKRQRFLY 961
Score = 49 (22.3 bits), Expect = 3.4e-52, Sum P(3) = 3.4e-52
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 448 FCLVLPCLVKLQQISNHLELIKPNP 472
F ++ CL++L+++ NH L + P
Sbjct: 979 FMSIVNCLMQLRKVCNHPNLFEVRP 1003
Score = 47 (21.6 bits), Expect = 3.1e-24, Sum P(3) = 3.1e-24
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 176 LAAVFGKDESSDSTILKDNKVD 197
L+A+FGK E SD + D+ D
Sbjct: 602 LSALFGKGEESDGDLDLDDSED 623
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 332 (121.9 bits), Expect = 3.4e-52, Sum P(3) = 3.4e-52
Identities = 92/282 (32%), Positives = 144/282 (51%)
Query: 126 IIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDES 185
+ VP + L E+Q G+ +L + + K GIL D+MGLGKTIQTIA LA +
Sbjct: 903 VTPVPFLLKHSLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHL------ 956
Query: 186 SDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKL--- 241
K N G LI+ PSSV+ NWE+EF +W F + Y+G ++ L+++
Sbjct: 957 ---ACAKGNW----GPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGWT 1009
Query: 242 EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
+ V ITS+ W+ +I+DEA +KN KS+ + L T R+ L
Sbjct: 1010 KPNAFHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLL 1069
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361
TGT +QN +MEL++L ++ P + F+E++ P+ G E + +
Sbjct: 1070 TGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPMT-GMI----EGNMEYNETLITR 1124
Query: 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
L V+R +LLRR K+E + M K ++V+ C +S+ Q+ Y
Sbjct: 1125 LHKVIRPFLLRRLKKE-VEKQMPKKYEHVITCRLSNRQRYLY 1165
Score = 325 (119.5 bits), Expect = 3.4e-52, Sum P(3) = 3.4e-52
Identities = 63/161 (39%), Positives = 100/161 (62%)
Query: 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
CGK++ +++L+ G ++L+F+ +MLD+LE FL G+ + RLDGST RQ L
Sbjct: 1657 CGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQIL 1716
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
++ FN F++STR+GG+G+NL A+ V+ +D +WNP D QAQDR R GQ R V
Sbjct: 1717 MERFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDV 1776
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG-KLEKRYFE 674
++RL+S ++E + + K+ LS++A+ G YF+
Sbjct: 1777 HIYRLVSERTIEVNILKKANQKRMLSDMAIEGGNFTTTYFK 1817
Score = 40 (19.1 bits), Expect = 3.4e-52, Sum P(3) = 3.4e-52
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 451 VLPCLVKLQQISNHLELIKPNPRDEP 476
V+ L++L+++ NH + + P P
Sbjct: 1186 VINVLMQLRKVCNHPNMFEARPTISP 1211
Score = 37 (18.1 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 336 DEPLKHGQRLTAPER 350
D P + RLT+P+R
Sbjct: 640 DTPSLNSSRLTSPKR 654
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 334 (122.6 bits), Expect = 4.0e-52, Sum P(2) = 4.0e-52
Identities = 61/155 (39%), Positives = 103/155 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+ GK+ AL+ L+ S+G ++L++S RM+D+LE++++ + +++ RLDGS+ + R
Sbjct: 1097 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1156
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ +V DF + VFL+STRAGGLG+NL +A+ V+ +D +WNP D QA DR+ R GQ
Sbjct: 1157 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1216
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
+ V V+RL+ G++EE + R K ++ + +SG
Sbjct: 1217 KQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1251
Score = 301 (111.0 bits), Expect = 4.0e-52, Sum P(2) = 4.0e-52
Identities = 87/305 (28%), Positives = 150/305 (49%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
I P N +L +Q +G+ +L LY+ GIL D+MGLGKT+Q+IA LA + ++
Sbjct: 508 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIW 567
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHG-PNRDMILEKL--- 241
G LII P+S + NW EF+R+ F V Y G P+ ++ +
Sbjct: 568 -------------GPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQ 614
Query: 242 -----EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTR 296
+ V+ITS+ V W+ +++DEA LK+ S + L+ + R
Sbjct: 615 KTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCR 674
Query: 297 NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAPERFIRIA 355
NR+ LTGT +QN + EL+ L ++ P + E F E++ + ++ H + +A I
Sbjct: 675 NRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSA------ID 728
Query: 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL 415
+ + L +L+ ++LRR K++ L K + +++C ++ QK Y+ L I+ L
Sbjct: 729 ENQLSRLHMILKPFMLRRIKKDVENELS-DKIEILMYCQLTSRQKLLYQALKNKISIEDL 787
Query: 416 INKDL 420
+ +
Sbjct: 788 LQSSM 792
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 334 (122.6 bits), Expect = 4.1e-52, Sum P(2) = 4.1e-52
Identities = 61/155 (39%), Positives = 103/155 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+ GK+ AL+ L+ S+G ++L++S RM+D+LE++++ + +++ RLDGS+ + R
Sbjct: 1101 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1160
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ +V DF + VFL+STRAGGLG+NL +A+ V+ +D +WNP D QA DR+ R GQ
Sbjct: 1161 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1220
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
+ V V+RL+ G++EE + R K ++ + +SG
Sbjct: 1221 KQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1255
Score = 301 (111.0 bits), Expect = 4.1e-52, Sum P(2) = 4.1e-52
Identities = 87/305 (28%), Positives = 150/305 (49%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
I P N +L +Q +G+ +L LY+ GIL D+MGLGKT+Q+IA LA + ++
Sbjct: 511 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIW 570
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHG-PNRDMILEKL--- 241
G LII P+S + NW EF+R+ F V Y G P+ ++ +
Sbjct: 571 -------------GPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQ 617
Query: 242 -----EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTR 296
+ V+ITS+ V W+ +++DEA LK+ S + L+ + R
Sbjct: 618 KTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCR 677
Query: 297 NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAPERFIRIA 355
NR+ LTGT +QN + EL+ L ++ P + E F E++ + ++ H + +A I
Sbjct: 678 NRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSA------ID 731
Query: 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL 415
+ + L +L+ ++LRR K++ L K + +++C ++ QK Y+ L I+ L
Sbjct: 732 ENQLSRLHMILKPFMLRRIKKDVENELS-DKIEILMYCQLTSRQKLLYQALKNKISIEDL 790
Query: 416 INKDL 420
+ +
Sbjct: 791 LQSSM 795
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 334 (122.6 bits), Expect = 4.1e-52, Sum P(2) = 4.1e-52
Identities = 61/155 (39%), Positives = 103/155 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+ GK+ AL+ L+ S+G ++L++S RM+D+LE++++ + +++ RLDGS+ + R
Sbjct: 1107 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1166
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ +V DF + VFL+STRAGGLG+NL +A+ V+ +D +WNP D QA DR+ R GQ
Sbjct: 1167 RDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1226
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
+ V V+RL+ G++EE + R K ++ + +SG
Sbjct: 1227 KQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1261
Score = 301 (111.0 bits), Expect = 4.1e-52, Sum P(2) = 4.1e-52
Identities = 87/305 (28%), Positives = 150/305 (49%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
I P N +L +Q +G+ +L LY+ GIL D+MGLGKT+Q+IA LA + ++
Sbjct: 517 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIW 576
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHG-PNRDMILEKL--- 241
G LII P+S + NW EF+R+ F V Y G P+ ++ +
Sbjct: 577 -------------GPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQ 623
Query: 242 -----EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTR 296
+ V+ITS+ V W+ +++DEA LK+ S + L+ + R
Sbjct: 624 KTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCR 683
Query: 297 NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAPERFIRIA 355
NR+ LTGT +QN + EL+ L ++ P + E F E++ + ++ H + +A I
Sbjct: 684 NRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSA------ID 737
Query: 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL 415
+ + L +L+ ++LRR K++ L K + +++C ++ QK Y+ L I+ L
Sbjct: 738 ENQLSRLHMILKPFMLRRIKKDVENELS-DKIEILMYCQLTSRQKLLYQALKNKISIEDL 796
Query: 416 INKDL 420
+ +
Sbjct: 797 LQSSM 801
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 334 (122.6 bits), Expect = 4.1e-52, Sum P(2) = 4.1e-52
Identities = 61/155 (39%), Positives = 103/155 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+ GK+ AL+ L+ S+G ++L++S RM+D+LE++++ + +++ RLDGS+ + R
Sbjct: 1107 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1166
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ +V DF + VFL+STRAGGLG+NL +A+ V+ +D +WNP D QA DR+ R GQ
Sbjct: 1167 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1226
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
+ V V+RL+ G++EE + R K ++ + +SG
Sbjct: 1227 KQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1261
Score = 301 (111.0 bits), Expect = 4.1e-52, Sum P(2) = 4.1e-52
Identities = 87/305 (28%), Positives = 150/305 (49%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
I P N +L +Q +G+ +L LY+ GIL D+MGLGKT+Q+IA LA + ++
Sbjct: 517 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIW 576
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHG-PNRDMILEKL--- 241
G LII P+S + NW EF+R+ F V Y G P+ ++ +
Sbjct: 577 -------------GPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQ 623
Query: 242 -----EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTR 296
+ V+ITS+ V W+ +++DEA LK+ S + L+ + R
Sbjct: 624 KTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCR 683
Query: 297 NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAPERFIRIA 355
NR+ LTGT +QN + EL+ L ++ P + E F E++ + ++ H + +A I
Sbjct: 684 NRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSA------ID 737
Query: 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL 415
+ + L +L+ ++LRR K++ L K + +++C ++ QK Y+ L I+ L
Sbjct: 738 ENQLSRLHMILKPFMLRRIKKDVENELS-DKIEILMYCQLTSRQKLLYQALKNKISIEDL 796
Query: 416 INKDL 420
+ +
Sbjct: 797 LQSSM 801
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 334 (122.6 bits), Expect = 5.2e-52, Sum P(2) = 5.2e-52
Identities = 61/155 (39%), Positives = 103/155 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+ GK+ AL+ L+ S+G ++L++S RM+D+LE++++ + +++ RLDGS+ + R
Sbjct: 1100 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1159
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ +V DF + VFL+STRAGGLG+NL +A+ V+ +D +WNP D QA DR+ R GQ
Sbjct: 1160 RDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1219
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
+ V V+RL+ G++EE + R K ++ + +SG
Sbjct: 1220 KQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1254
Score = 300 (110.7 bits), Expect = 5.2e-52, Sum P(2) = 5.2e-52
Identities = 87/305 (28%), Positives = 149/305 (48%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
I P N +L +Q +G+ +L LY+ GIL D+MGLGKT+Q+IA LA + ++
Sbjct: 510 IPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIW 569
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHG-PNRDMILEKL--- 241
G LII P+S + NW EF+R+ F V Y G P+ ++ +
Sbjct: 570 -------------GPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQ 616
Query: 242 -----EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTR 296
+ V+ITS+ V W+ +++DEA LK+ S + L+ + R
Sbjct: 617 KTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCR 676
Query: 297 NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAPERFIRIA 355
NR+ LTGT +QN + EL+ L ++ P + E F E++ + ++ H + +A I
Sbjct: 677 NRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSA------ID 730
Query: 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL 415
+ + L +L+ ++LRR K++ L K + + +C ++ QK Y+ L I+ L
Sbjct: 731 ENQLSRLHMILKPFMLRRIKKDVENELS-DKIEILTYCQLTSRQKLLYQALKNKISIEDL 789
Query: 416 INKDL 420
+ +
Sbjct: 790 LQSSM 794
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 371 (135.7 bits), Expect = 5.4e-52, Sum P(2) = 5.4e-52
Identities = 78/173 (45%), Positives = 110/173 (63%)
Query: 494 IDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLI 553
+D G ++ + G+ V S GKM LE+L+ +G ++L+FS VRMLDIL ++
Sbjct: 654 LDKAGSPSRENTLKGI--VMSSGKMVLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMF 711
Query: 554 RKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPN 612
KGY F RLDG+ PS+ R+ +D FN+ SK FL+STRAGGLG+NL++A+ V+IFD +
Sbjct: 712 IKGYQFQRLDGTVPSSKRKIAIDHFNAPGSKDFAFLLSTRAGGLGINLMTADTVIIFDSD 771
Query: 613 WNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS 665
WNP DLQA R+ R GQK HV V+R +S ++EE + R K L +S
Sbjct: 772 WNPQADLQAMARAHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIIS 824
Score = 260 (96.6 bits), Expect = 5.4e-52, Sum P(2) = 5.4e-52
Identities = 83/292 (28%), Positives = 146/292 (50%)
Query: 126 IIQVPASI-NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA-AVFGKD 183
+ + P I N L + Q G+ ++ L+ GIL D+MGLGKT+QT+AFL+ ++ +
Sbjct: 350 LFKQPVFIKNGELRDFQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYARR 409
Query: 184 ESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYH---GPNRDMILE- 239
++ G L++ P S + W+ F +W+ +Y+ G R I E
Sbjct: 410 QN--------------GPHLVVVPLSTVPAWQETFEKWAPDVNCVYYLGNGEARKTIREY 455
Query: 240 KL----EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKT 295
+L VL+T+++ + L W+ + VDEAHRLKN +S LY A K
Sbjct: 456 ELYNQNRKPKFNVLLTTYEYILKDKNELGAFKWQFLAVDEAHRLKNAESSLYEALKGFKV 515
Query: 296 RNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIA 355
NR+ +TGT +QN + EL L +++ PG T + +F E + Q E++I+
Sbjct: 516 SNRLLITGTPLQNNVKELAALCNFLMPGKF-TIDQEIDF--ETIDSEQ-----EQYIK-- 565
Query: 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
D +K+ + ++LRR K++ + + K + ++ +SD+Q Y+ ++
Sbjct: 566 DLQKK-----ISPFILRRLKKD-VEKSLPSKSERILRVELSDIQTEYYKNII 611
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 356 (130.4 bits), Expect = 5.9e-52, Sum P(2) = 5.9e-52
Identities = 80/188 (42%), Positives = 116/188 (61%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+ + GKM L+KL+ G ++L+FS VRML+IL +++ +GY++ RLDG+ P+++R
Sbjct: 700 IMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVR 759
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ +D FN+ S VFL+STRAGGLG+NL +A+ V+IFD +WNP DLQA R+ R GQ
Sbjct: 760 RVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQ 819
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKLEK--RYFEGVQDCKEFQGEL- 686
K HV V+R LS ++EE + R K L +S G EK D +E L
Sbjct: 820 KNHVNVYRFLSKDTVEEDILERARRKMILEYAIISLGVTEKSKNSKNDKYDAQELSAILK 879
Query: 687 FGICNLFR 694
FG N+F+
Sbjct: 880 FGASNMFK 887
Score = 275 (101.9 bits), Expect = 5.9e-52, Sum P(2) = 5.9e-52
Identities = 80/279 (28%), Positives = 138/279 (49%)
Query: 139 EHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDK 198
+ Q G+ ++ L+ GIL D+MGLGKT+QT+ FL+ + LK +
Sbjct: 392 DFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHS--------LKQH---- 439
Query: 199 KGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHG--PNRDMILE-------KLEACGVEV 248
G LI+ P S + W+ + W+ N Y G +R I E +
Sbjct: 440 -GPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKFNI 498
Query: 249 LITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQN 308
L+T+++ L+ + W+ + +DEAHRLKN +S LY + +T NR+ +TGT +QN
Sbjct: 499 LLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPLQN 558
Query: 309 KIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRK 368
+ EL +L +++ PG R+ +D+P + ++ ER IR ER L+
Sbjct: 559 NLKELASLVNFLMPGKFYIRDELN--FDQP--NAEQ----ERDIRDLQER-------LQP 603
Query: 369 YLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
++LRR K++ + + K + ++ +SD+Q Y+ +L
Sbjct: 604 FILRRLKKD-VEKSLPSKSERILRVELSDMQTEWYKNIL 641
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 370 (135.3 bits), Expect = 7.2e-52, Sum P(4) = 7.2e-52
Identities = 76/164 (46%), Positives = 110/164 (67%)
Query: 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSR 561
+N I LS ++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L K Y F R
Sbjct: 766 ENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQR 825
Query: 562 LDGSTPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
LDGS +R+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQ
Sbjct: 826 LDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQ 885
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
AQ R+ R GQK+ V ++RL++ G++EE + R K L ++ +
Sbjct: 886 AQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 929
Score = 279 (103.3 bits), Expect = 7.2e-52, Sum P(4) = 7.2e-52
Identities = 80/251 (31%), Positives = 133/251 (52%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGG-ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
N L ++Q EG+ +L + N+ IL D+MGLGKTIQTI+FL+ +F + +
Sbjct: 469 NLELRDYQLEGLNWLAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQHQLY------ 522
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEA 243
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + +
Sbjct: 523 -------GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKR 575
Query: 244 CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303
LIT+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TG
Sbjct: 576 LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 635
Query: 304 TIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRL-TAPERFI--RIADERK 359
T +QN + EL++L ++ P E F E + + ++G Q L E F+ R+ + +
Sbjct: 636 TPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVE 695
Query: 360 QHLVAVLRKYL 370
+ L A + + L
Sbjct: 696 KSLPAKVEQIL 706
Score = 236 (88.1 bits), Expect = 2.1e-47, Sum P(4) = 2.1e-47
Identities = 66/217 (30%), Positives = 113/217 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVEVLI 250
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + + LI
Sbjct: 523 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 582
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310
T+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +QN +
Sbjct: 583 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 642
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L ++ P E + +F ++ HG+ + Q L VL +L
Sbjct: 643 KELWSLLHFIMPEKF---EFWEDFEED---HGKG----------RENGYQSLHKVLEPFL 686
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 687 LRRVKKD-VEKSLPAKVEQILRVEMSALQKQYYKWIL 722
Score = 42 (19.8 bits), Expect = 7.2e-52, Sum P(4) = 7.2e-52
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDE 475
L +++L++ NH LIKP +E
Sbjct: 741 LNIVMELKKCCNHCYLIKPPEENE 764
Score = 37 (18.1 bits), Expect = 7.2e-52, Sum P(4) = 7.2e-52
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 787 QRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSK 826
Q+KK+++I RP S R +L+ + +L K
Sbjct: 1558 QKKKDDAIGGKKPFRPEASGSSRDSLMSQSHTPHNLHPQK 1597
>UNIPROTKB|F2Z2R4 [details] [associations]
symbol:ERCC6L2 "DNA excision repair protein ERCC-6-like 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 EMBL:AL161454
HGNC:HGNC:26922 ChiTaRS:ERCC6L2 EMBL:AL159167 IPI:IPI00827832
ProteinModelPortal:F2Z2R4 SMR:F2Z2R4 Ensembl:ENST00000456993
ArrayExpress:F2Z2R4 Bgee:F2Z2R4 Uniprot:F2Z2R4
Length = 365
Score = 542 (195.9 bits), Expect = 7.7e-52, P = 7.7e-52
Identities = 116/314 (36%), Positives = 184/314 (58%)
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
EL+ + DW PG LG+ +F++ + +P++HGQR TA +R + + Q L + + L
Sbjct: 3 ELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFL 62
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQV 431
RRTK I + KED +V+C+++D QK Y+ +L+ ++ ++ PC+C S +
Sbjct: 63 RRTKT-LIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRR 121
Query: 432 ECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFG 491
CC + N G ++ L L L LQ+++NH+ L++ + ++ + VF
Sbjct: 122 NCCYKT-NSHG-ETVK-TLYLSYLTVLQKVANHVALLQAASTSK-QQETLIKRICDQVFS 177
Query: 492 PDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKF 551
D V +++ +F LSD K GKM+ L++L+ DK+LLFS+S ++LD+L+++
Sbjct: 178 RFPDFVQ-KSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQY 236
Query: 552 LIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDP 611
+ G + RLDGST S R +V +FNS+ + L+ST AGGLGLN V AN VV+FDP
Sbjct: 237 CMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDP 296
Query: 612 NWNPAQDLQAQDRS 625
WNPA DLQA DR+
Sbjct: 297 TWNPANDLQAIDRT 310
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 352 (129.0 bits), Expect = 7.8e-52, Sum P(2) = 7.8e-52
Identities = 69/166 (41%), Positives = 108/166 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GK L++++ ++G K+LLFS RMLDIL + + ++FSRLDGS + R
Sbjct: 573 VTNSGKFLILDRMLPELKTRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSER 632
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ + FN+ P +FL+STRAGGLG+NL +A+ V+I+D +WNP DLQAQDR R GQ
Sbjct: 633 EKNIHSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQT 692
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQ 677
R V+V+RL++A ++++ + R K++L + + K +F+G Q
Sbjct: 693 RPVVVYRLVTANTIDQKIVERAAAKRKLEKLII----HKNHFKGGQ 734
Score = 270 (100.1 bits), Expect = 7.8e-52, Sum P(2) = 7.8e-52
Identities = 93/308 (30%), Positives = 150/308 (48%)
Query: 113 FEPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNKHGGILGDDMGLGKTIQ 171
F+P V +G+ Q P ++ +Q EG+++L L++N GIL D+MGLGKT+Q
Sbjct: 177 FDP-VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 235
Query: 172 TIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYH 230
IA +A + + G L+ P S + NW EF R++ +YH
Sbjct: 236 CIATIALMIQRGVP--------------GPFLVCGPLSTLPNWMAEFKRFTPEIPTMLYH 281
Query: 231 GPNRDM-ILEKL--EACGV----EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283
G ++ IL K E G V+ITSF+ + L W+ +IVDE HR+KN K
Sbjct: 282 GTQQERRILVKHIHERKGTLQIHPVVITSFEIAMRDRTTLQNCYWKYLIVDEGHRIKNMK 341
Query: 284 SKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQ 343
+L N++ LTGT +QN + EL++L +++ P + F ++D
Sbjct: 342 CRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDIT----- 396
Query: 344 RLTAPERFIRIADERKQ---HLV-AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQ 399
L+ I IA ER+Q H++ +L +LLRR K + + + K + VV+ +S Q
Sbjct: 397 SLSETAEDI-IAKEREQNVLHMLHQILTPFLLRRLKSD-VALEVPPKREVVVYAPLSKKQ 454
Query: 400 KRAYRRLL 407
+ Y ++
Sbjct: 455 EIFYTAIV 462
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 370 (135.3 bits), Expect = 1.0e-51, Sum P(4) = 1.0e-51
Identities = 76/164 (46%), Positives = 110/164 (67%)
Query: 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSR 561
+N I LS ++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L K Y F R
Sbjct: 779 ENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQR 838
Query: 562 LDGSTPSNLRQSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQ 620
LDGS +R+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQ
Sbjct: 839 LDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQ 898
Query: 621 AQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
AQ R+ R GQK+ V ++RL++ G++EE + R K L ++ +
Sbjct: 899 AQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 942
Score = 279 (103.3 bits), Expect = 1.0e-51, Sum P(4) = 1.0e-51
Identities = 79/250 (31%), Positives = 132/250 (52%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N L ++Q EG+ +L + + IL D+MGLGKTIQTI+FL+ +F + +
Sbjct: 483 NLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY------- 535
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEAC 244
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + +
Sbjct: 536 ------GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRL 589
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
LIT+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT
Sbjct: 590 KFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 649
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRL-TAPERFI--RIADERKQ 360
+QN + EL++L ++ P E F E + + ++G Q L E F+ R+ + ++
Sbjct: 650 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEK 709
Query: 361 HLVAVLRKYL 370
L A + + L
Sbjct: 710 SLPAKVEQIL 719
Score = 236 (88.1 bits), Expect = 3.0e-47, Sum P(4) = 3.0e-47
Identities = 66/217 (30%), Positives = 113/217 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVEVLI 250
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + + LI
Sbjct: 536 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 595
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310
T+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +QN +
Sbjct: 596 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 655
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L ++ P E + +F ++ HG+ + Q L VL +L
Sbjct: 656 KELWSLLHFIMPEKF---EFWEDFEED---HGKG----------RENGYQSLHKVLEPFL 699
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 700 LRRVKKD-VEKSLPAKVEQILRVEMSALQKQYYKWIL 735
Score = 42 (19.8 bits), Expect = 1.0e-51, Sum P(4) = 1.0e-51
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDE 475
L +++L++ NH LIKP +E
Sbjct: 754 LNIVMELKKCCNHCYLIKPPEENE 777
Score = 37 (18.1 bits), Expect = 1.0e-51, Sum P(4) = 1.0e-51
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 787 QRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSK 826
Q+KK+++I RP S R +L+ + +L K
Sbjct: 1569 QKKKDDAIGGKKPFRPEASGSSRDSLMSQSHTPHNLHPQK 1608
Score = 37 (18.1 bits), Expect = 9.3e-27, Sum P(4) = 9.3e-27
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 262 ILSEVNWEIVIVDEAHRLKNEKSKL 286
+ SE+N + IV+ +K KS L
Sbjct: 368 LASELNKQYQIVERVIAVKTSKSTL 392
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 316 (116.3 bits), Expect = 1.2e-51, Sum P(2) = 1.2e-51
Identities = 92/276 (33%), Positives = 146/276 (52%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L +Q +GV +L + Y+ +HG ILGD+MGLGKT QTI+ L + K
Sbjct: 45 KLRPYQLDGVNWLVQCYQVQHGCILGDEMGLGKTCQTISLL-------------LYLTKK 91
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWS---TFNVSIYHGPNRDMILEKL-EACGVEVLIT 251
+ K LI+CP SV+ NW+ E R++ +F + + R + + L E VL+T
Sbjct: 92 LTNKERSLILCPLSVLSNWKEELERFAPGLSFVTYVGNKEERYKLQQNLKEQSHFRVLLT 151
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
+++ + L +W ++VDEAHRLKN+ S LY EL + LTGT +QN +
Sbjct: 152 TYEICLKDAAFLKFFDWAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTPIQNSLQ 211
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
ELY+L ++ P + R+ +EF +++ Q A E+ E + L +L+ +LL
Sbjct: 212 ELYSLLSFIEP-DIFPRKQVKEF----VEYYQ---AVEK----ESEPAKELHNLLQPFLL 259
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
RR K E L K + V++ MS LQ++ Y+ +L
Sbjct: 260 RRVKSEVTADLPK-KVEVVLYHGMSALQRKYYKAIL 294
Score = 308 (113.5 bits), Expect = 1.2e-51, Sum P(2) = 1.2e-51
Identities = 67/164 (40%), Positives = 101/164 (61%)
Query: 504 ESF-IGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRL 562
E F IG V++ GK+ L+KL+ G ++LLFS ++LDIL+ ++ +GYS+ RL
Sbjct: 334 EPFEIGDHIVEASGKLCLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGYSYERL 393
Query: 563 DGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQ 622
DGS R + +F P VFL+STRAGG+G+NL +A+ V+ D ++NP DLQA
Sbjct: 394 DGSVRGEERHLAIKNFGQQPIF-VFLLSTRAGGVGMNLTAADTVIFTDSDFNPQNDLQAI 452
Query: 623 DRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666
R+ R GQ + V + RL+ ++EE++Y R K +L+N V G
Sbjct: 453 ARAHRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVEG 496
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 325 (119.5 bits), Expect = 1.3e-51, Sum P(3) = 1.3e-51
Identities = 71/182 (39%), Positives = 111/182 (60%)
Query: 500 NAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSF 559
NA + F + +++ GK+ ++KL+ + G ++L+FS VR LDILE +LI++ Y +
Sbjct: 460 NADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPY 519
Query: 560 SRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618
R+DG NLRQ+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP D
Sbjct: 520 ERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQND 579
Query: 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNI---AVSGKLEKRYFEG 675
LQAQ R R GQ + V ++RL++ S E ++ + K L ++SG+ + G
Sbjct: 580 LQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR--ENATNG 637
Query: 676 VQ 677
VQ
Sbjct: 638 VQ 639
Score = 316 (116.3 bits), Expect = 1.3e-51, Sum P(3) = 1.3e-51
Identities = 96/290 (33%), Positives = 146/290 (50%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N +L E+Q EGV +L + N IL D+MGLGKTIQ+I FL ++ LK
Sbjct: 151 NNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFLYEIY----------LKG 200
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPN---RDMILEKL---EACG-- 245
G L+I P S I NWE EF W+ NV +YHG R + L ++ + G
Sbjct: 201 IH----GPFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 256
Query: 246 ------VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRI 299
+IT+F+ L + W V++DEAHRLKN KL + +++
Sbjct: 257 IKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKV 316
Query: 300 GLTGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADER 358
LTGT +QN + EL++L ++ PG + F +EF D LK +E+
Sbjct: 317 LLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEFGD--LK--------------TEEQ 360
Query: 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
Q L A+L+ +LRR KE+ +L KE+ ++ ++++QK+ YR +L+
Sbjct: 361 VQKLQAILKPMMLRRLKEDVEKNLAP-KEETIIEVELTNIQKKYYRAILE 409
Score = 37 (18.1 bits), Expect = 1.3e-51, Sum P(3) = 1.3e-51
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 746 GSKTRKSSDPEMARTSKPLLEDMGI 770
G R+ DPE T P +++ +
Sbjct: 1035 GEFDREDEDPEYKPTRTPFKDEIDV 1059
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 330 (121.2 bits), Expect = 1.3e-51, Sum P(3) = 1.3e-51
Identities = 67/146 (45%), Positives = 95/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
++S GK+ ++KL+ + G K+L+FS VR LDILE +LI K Y + R+DG NLR
Sbjct: 1177 IQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLR 1236
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1237 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1296
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ R K
Sbjct: 1297 NKAVKVYRLVTRNSYEREMFDRASLK 1322
Score = 314 (115.6 bits), Expect = 1.3e-51, Sum P(3) = 1.3e-51
Identities = 96/289 (33%), Positives = 148/289 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL V +L
Sbjct: 858 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEV----------LL---- 903
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLE----------- 242
+G LII P S I NWE EF W+ NV +YHG +R MI ++ E
Sbjct: 904 TGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMI-QQYEMYFRDSQGRII 962
Query: 243 --ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIG 300
A + +IT+F+ L+ + W VI+DEAHRLKN+ KL + +++
Sbjct: 963 RGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1022
Query: 301 LTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI-ADERK 359
LTGT +QN + EL++L HF E PL+ T + F + +E+
Sbjct: 1023 LTGTPLQNTVEELFSLL------------HFLE----PLRFPSESTFMQEFGDLKTEEQV 1066
Query: 360 QHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
Q L A+L+ +LRR KE+ + + KE+ ++ ++++QK+ YR +L+
Sbjct: 1067 QKLQAILKPMMLRRLKED-VEKRLAPKEETIIEVELTNIQKKYYRAILE 1114
Score = 46 (21.3 bits), Expect = 1.3e-51, Sum P(3) = 1.3e-51
Identities = 20/108 (18%), Positives = 46/108 (42%)
Query: 730 ETHIVSSKDSNTLLSTG----SKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPG 785
++ + S+ S LL S + +S P + PL+ED+ + +++ + +
Sbjct: 2004 QSKVTHSRTSTPLLQQYQVVLSASPLTSSPRLLGAKGPLVEDVRV----KSESLAEEPQS 2059
Query: 786 FQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLA--SSKDRKNI 831
+ + S+ + P+ S + +L A G++ S DR+ +
Sbjct: 2060 SEEESMSSMETRTRVKSEPV-SPKNGVLSQAPGEQKSGGKSETDRRMV 2106
Score = 43 (20.2 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 459 QQISNHLELIKPNPRDEPDKQRK 481
+++ NHL L P PR K+ K
Sbjct: 1565 RELQNHLGLSAPVPRGRKGKKVK 1587
Score = 41 (19.5 bits), Expect = 4.4e-51, Sum P(3) = 4.4e-51
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 725 GFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIV 771
G + HI+ +D ++ S +RTS PLL+ +V
Sbjct: 1979 GVSRTDYHIL--RDPELSFMAAQRSYSQSKVTHSRTSTPLLQQYQVV 2023
Score = 39 (18.8 bits), Expect = 5.4e-21, Sum P(3) = 5.4e-21
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 595 GLGLNLVSANRVVIFDPNWNPAQDLQA 621
GL L+L + ++ FD N + DL++
Sbjct: 2796 GLNLHLPALSQSNTFDVQKNKSSDLES 2822
Score = 37 (18.1 bits), Expect = 7.9e-23, Sum P(3) = 7.9e-23
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 281 NEKSKLYMACLELKTRNRIG-LTGTIMQN 308
N K K AC +LK + +IG L T+ +N
Sbjct: 578 NRKPK---ACSKLKEKTKIGKLIITLGKN 603
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 342 (125.4 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 67/160 (41%), Positives = 99/160 (61%)
Query: 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
CGK++ L L+ S+G + L+F+ ++LDILE+FL GY + RLDG+T RQ L
Sbjct: 1365 CGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLL 1424
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
+ FN P VF++STR+GGLG+NL A+ V+ +D +WNPA D Q QDR R GQ R V
Sbjct: 1425 TEKFNRDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDV 1484
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKLEKRYF 673
++R +S ++E + + K+QL N+ + G+ YF
Sbjct: 1485 HIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEFTTDYF 1524
Score = 288 (106.4 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 109/418 (26%), Positives = 183/418 (43%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
+ +P+ + L +Q++G+ +L LY N GIL D+MGLGKTIQTI+ LA + +
Sbjct: 813 VPIPSLLRGTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHH-- 870
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKL---E 242
K G LII P+SV+ NWE+EF +++ F V Y+G + ++ +
Sbjct: 871 -----------KWGPHLIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNK 919
Query: 243 ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
V ITS+ W +I+DEAH +KN +S + A L T NR+ LT
Sbjct: 920 PDAFHVCITSYQLVVQDQQSFKRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLT 979
Query: 303 GTIMQNKIMELYNLFDWVAPGSLGTR---EHFREFYDEPLKHGQRLTAPERFIRIADERK 359
GT +QN +MEL++L ++ P S + E F D G+ + R +
Sbjct: 980 GTPLQNNLMELWSLLYFLMPSSKVNQAMPEGFANLDDFQQWFGKPVN---RILEQTSAGN 1036
Query: 360 QHLVAVLRKYLLRRTKE--ETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLIN 417
L+ + + +E T+ L ++ D++K+ + + + C ++
Sbjct: 1037 SDLIDENERTTQKMDEETRNTVARLHQVLRPYLLRRLKKDVEKQMPGKYEHI--VYCRLS 1094
Query: 418 KDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLEL--IKP----- 470
K + R + S F ++ CL++L+++ NH +L ++P
Sbjct: 1095 KR------QRFLYDDFMSRAKTKETLASGNFLSIINCLMQLRKVCNHPDLFEVRPIVTSF 1148
Query: 471 -NPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDV-----KSCGKMRALE 522
PR P + EL F D + V A N G ++ +S GK+ E
Sbjct: 1149 AMPRSIPSYYQSTNELVKRQFNKD-ETVSFQALNLDVTGCENMNYFVCQSTGKLMTTE 1205
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 363 (132.8 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 72/154 (46%), Positives = 105/154 (68%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L K Y F RLDGS +R
Sbjct: 794 IRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIR 853
Query: 572 QSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQAQ R+ R GQ
Sbjct: 854 KQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ 913
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
K+ V ++RL++ G++EE + R K L ++ +
Sbjct: 914 KKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 947
Score = 278 (102.9 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 79/250 (31%), Positives = 132/250 (52%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N L ++Q EG+ +L + + IL D+MGLGKTIQTI+FL+ +F + +
Sbjct: 488 NLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY------- 540
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEAC 244
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + +
Sbjct: 541 ------GPFLIVVPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIREYEWIHSQTKRL 594
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
LIT+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT
Sbjct: 595 KFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 654
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRL-TAPERFI--RIADERKQ 360
+QN + EL++L ++ P E F E + + ++G Q L E F+ R+ + ++
Sbjct: 655 PLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEK 714
Query: 361 HLVAVLRKYL 370
L A + + L
Sbjct: 715 SLPAKVEQIL 724
Score = 235 (87.8 bits), Expect = 6.8e-47, Sum P(3) = 6.8e-47
Identities = 66/217 (30%), Positives = 113/217 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVEVLI 250
G LI+ P S + +W+ EF W+ NV +Y G +R+ I E + + LI
Sbjct: 541 GPFLIVVPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 600
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310
T+++ ++L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +QN +
Sbjct: 601 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 660
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L ++ P E + +F ++ HG+ + Q L VL +L
Sbjct: 661 KELWSLLHFIMPEKF---EFWEDFEED---HGKG----------RENGYQSLHKVLEPFL 704
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 705 LRRVKKD-VEKSLPAKVEQILRVEMSALQKQYYKWIL 740
Score = 38 (18.4 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 787 QRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSK 826
Q+KK++++ RP S R +L+ + +L K
Sbjct: 1573 QKKKDDTLGGKKPFRPEASGSSRDSLISQSHASHNLHPQK 1612
Score = 38 (18.4 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 26/108 (24%), Positives = 40/108 (37%)
Query: 262 ILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMEL-YNLFDWV 320
+ SE+N + IV+ +K KS L +R K M L Y+ W
Sbjct: 376 LASELNKQYQIVERVIAVKTSKSALGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWE 435
Query: 321 APGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRK 368
+G + F+ D T P R + +R + VA L+K
Sbjct: 436 DEALIGKK--FQSCIDSFHSRNNSKTIPTRECKALKQRPR-FVA-LKK 479
>POMBASE|SPAC22F3.03c [details] [associations]
symbol:rdh54 "ATP-dependent DNA helicase Rdh54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC22F3.03c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0004003
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007131 KO:K10877 EMBL:AY293737 PIR:S62418
PIR:T38188 RefSeq:NP_593038.2 ProteinModelPortal:Q09772
IntAct:Q09772 STRING:Q09772 EnsemblFungi:SPAC22F3.03c.1
GeneID:2541798 KEGG:spo:SPAC22F3.03c OMA:NTENTRT OrthoDB:EOG4CVKG1
NextBio:20802886 Uniprot:Q09772
Length = 811
Score = 319 (117.4 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 82/278 (29%), Positives = 139/278 (50%)
Query: 137 LLEHQREGVKFLYKLYKNKHG-----GILGDDMGLGKTIQTIAFLAAVFGKDESSDSTIL 191
L HQREGV FLY G IL D+MGLGKT+QTI + + + ++ +
Sbjct: 205 LYSHQREGVSFLYDCLLGMEGKCGYSAILADEMGLGKTLQTITVVWTLLKQSYYANRSST 264
Query: 192 KDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFN-VSIYHGPNRDMILEKLEACGVEVLI 250
+N +++ P ++++NWE EF W + +Y + E ++I
Sbjct: 265 INN-------AMVVAPVTLLKNWENEFYNWLGHERIHVYIARCAEDFQEFTSNKTYSIII 317
Query: 251 TSFDSYRIH-GSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNK 309
T +++ + + ++ +++I DEAHRLK+ S+ ++ +LKTR R+ LTGT +QN
Sbjct: 318 TGYETVCTYLRNYGCGIDIDLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQND 377
Query: 310 IMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKY 369
+ E +++ +++ PGSLGT F+ Y+ P+ + + A R I + R Q L +
Sbjct: 378 LSEYFSMVNFIIPGSLGTPNSFKAQYERPILRSRSMNASSRDISLGAARLQRLFEFTSNF 437
Query: 370 LLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR HL + D V+F + Q+ Y +L
Sbjct: 438 TLRRKANILAKHLPP-RTDIVLFIKPTHQQENVYGHVL 474
Score = 299 (110.3 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 69/171 (40%), Positives = 104/171 (60%)
Query: 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQS 573
S K++ L L+ S+ K ++ S L+++E FL F +L GSTP + R
Sbjct: 530 SSSKLQILAALLKSFQRGCQKAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERDL 589
Query: 574 LVDDFNSSPSKQ--VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+V +FN+S K+ V L+S++AGG GLNL + R++I++P+WNPAQDLQA R +R GQK
Sbjct: 590 IVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSGQK 649
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSN--IAVSGKLEKRYFEGVQDCK 680
R V ++ LS+G L+E ++ RQ KQ LS+ I +K +F G +D K
Sbjct: 650 RPVCIYTFLSSGMLDERIFIRQNTKQGLSSSFIDSDASQKKNFFTG-EDIK 699
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 359 (131.4 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 73/154 (47%), Positives = 103/154 (66%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+ GK+ L+KL+ +G+++L+FS VRMLDIL +L K Y F RLDGS LR
Sbjct: 792 VRGGGKLVLLDKLLTRLKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELR 851
Query: 572 QSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQAQ R+ R GQ
Sbjct: 852 KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ 911
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
K+ V ++RL++ G++EE + R K L ++ +
Sbjct: 912 KKQVNIYRLVTKGTVEEDIIERAKKKMVLDHLVI 945
Score = 268 (99.4 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 80/265 (30%), Positives = 134/265 (50%)
Query: 125 PIIQVPASI---NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFG 181
P+ + P+ I N L ++Q +GV +L + + IL D+MGLGKTIQTI+FL+ +F
Sbjct: 474 PLKKQPSYIGDENLELRDYQLDGVNWLAHSWCRCNSVILADEMGLGKTIQTISFLSYLFH 533
Query: 182 KDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMIL 238
+ + G +++ P S + +W+ EF W+ NV +Y G +R I
Sbjct: 534 QHQLY-------------GPFIVVVPLSTLTSWQREFDTWAPDMNVVVYLGDVTSRKTIR 580
Query: 239 E------KLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLE 292
+ + + L+T+++ +L +NW + VDEAHRLKN+ S LY ++
Sbjct: 581 DYEWINPQTKRIKFNALLTTYEILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKTLID 640
Query: 293 LKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFI 352
++ +R+ +TGT +QN + EL++L ++ E + +F DE HG+
Sbjct: 641 FRSNHRLLITGTPLQNSLKELWSLLHFLMSDKF---ESWEDFEDE---HGKG-------- 686
Query: 353 RIADERKQHLVAVLRKYLLRRTKEE 377
D Q L VL +LLRR K++
Sbjct: 687 --RDNGYQSLHKVLEPFLLRRVKKD 709
>UNIPROTKB|B5MDQ0 [details] [associations]
symbol:ERCC6L "FLJ20105 protein, isoform CRA_a"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135749 EMBL:CH471213
HOGENOM:HOG000074172 HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD
UniGene:Hs.47558 HGNC:HGNC:20794 IPI:IPI00873388 SMR:B5MDQ0
IntAct:B5MDQ0 STRING:B5MDQ0 Ensembl:ENST00000373657 Uniprot:B5MDQ0
Length = 1127
Score = 321 (118.1 bits), Expect = 3.4e-51, Sum P(3) = 3.4e-51
Identities = 69/172 (40%), Positives = 106/172 (61%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNL- 570
++ GKM L L+ +G + L+FS S ++L+I+E+ L + + R+DG+ L
Sbjct: 333 MEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLE 392
Query: 571 RQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
R+ ++ F + VFL++T+ GG+GL L +A RVVIFDP+WNPA D QA DR +R GQ
Sbjct: 393 REKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQ 452
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEK-RYFEGVQDCKE 681
K +V+V+RL++ G++EE +Y RQV+K L K RYF Q+ +E
Sbjct: 453 KENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSK-QELRE 503
Score = 295 (108.9 bits), Expect = 3.4e-51, Sum P(3) = 3.4e-51
Identities = 74/223 (33%), Positives = 122/223 (54%)
Query: 164 MGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST 223
MGLGKT+Q IAFL+ +F D++++ +VL+I P+++I W EF +W+
Sbjct: 1 MGLGKTVQIIAFLSGMF------DASLVN--------HVLLIMPTNLINTWVKEFIKWTP 46
Query: 224 -FNVSIYHGPNRDMILEKLEACGVE--VLITSFDSYRIHGSILS-----EVNWEIVIVDE 275
V +HGP++D L V+IT++ + LS E W+ VI+DE
Sbjct: 47 GMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDE 106
Query: 276 AHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSL-GTREHFREF 334
AH++K +K + + NR+ LTGT +QN + EL++LFD+ GSL GT + F+
Sbjct: 107 AHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKME 166
Query: 335 YDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEE 377
Y+ P+ + A + + ++L+A+++ Y LRRTKE+
Sbjct: 167 YENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKED 209
Score = 55 (24.4 bits), Expect = 3.4e-51, Sum P(3) = 3.4e-51
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 386 KEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRL 437
K D +++ + LQ+ YR+ + L I K+L SPL ++ K+L
Sbjct: 241 KNDLIIWIRLVPLQEEIYRKFVSLDHI-----KELLMETRSPLAELGVLKKL 287
Score = 44 (20.5 bits), Expect = 4.1e-25, Sum P(3) = 4.1e-25
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 55 LGETYNFSLPQQNPETR-REK--APVEKS 80
LG F + +NP TR REK P EK+
Sbjct: 157 LGTLKTFKMEYENPITRAREKDATPGEKA 185
Score = 39 (18.8 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 783 QPGFQRKKEESIPQDLSSRPPPIHSKRRNLLDCADGKESLASSKD 827
+P F R+ +E + + SS P +++ +D SL+ D
Sbjct: 199 KPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKND 243
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 322 (118.4 bits), Expect = 3.4e-51, Sum P(2) = 3.4e-51
Identities = 88/281 (31%), Positives = 141/281 (50%)
Query: 128 QVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAA--VFGKDES 185
++P IN L ++Q++GV +L L K K GIL DDMGLGKT+Q+I LA E
Sbjct: 85 KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEY 144
Query: 186 SDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST---FNVSIYHGPNRDMILEKLE 242
+ S + + + L++CP ++ +W E ++ + N Y GP + I + +
Sbjct: 145 ARSKLAECMPLPS----LVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQ 200
Query: 243 ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
+++ S+D R + + I+DE H +KN K+KL A +L RI L+
Sbjct: 201 VKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILS 260
Query: 303 GTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362
GT +QN ++EL++LFD++ PG LGT F Y +P+ + + R L
Sbjct: 261 GTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDAL 320
Query: 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403
+ +LLRR KE+ + L K +CT+S LQ + Y
Sbjct: 321 HRQVLPFLLRRMKEDVLQDLPP-KIIQDYYCTLSPLQVQLY 360
Score = 292 (107.8 bits), Expect = 3.4e-51, Sum P(2) = 3.4e-51
Identities = 61/135 (45%), Positives = 86/135 (63%)
Query: 534 KILLFSYSVRMLDILEKFLIRK---GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590
+IL+F MLDI+E L++ ++ RLDGS P R S+V FN+ PS V L++
Sbjct: 474 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 533
Query: 591 TRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVY 650
T GGLGLNL A+ VV + +WNP +DLQA DR+ R GQKR V V+RL++ G+LEE +
Sbjct: 534 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 593
Query: 651 TRQVYKQQLSNIAVS 665
Q +K ++N +S
Sbjct: 594 GLQKFKMNIANTVIS 608
Score = 43 (20.2 bits), Expect = 4.6e-25, Sum P(2) = 4.6e-25
Identities = 19/94 (20%), Positives = 41/94 (43%)
Query: 738 DSNTLLSTGSKTRKSSDPEMARTSKPL--LEDMGIVYAHRNDDIVNKQPGFQRKKEESIP 795
D + +S+ + + ++ P++ T L+ + + H + + P F+ E+
Sbjct: 371 DVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAV 430
Query: 796 QDLS----SRPPPIHSKRRNLLDCADGKESLASS 825
Q+ S P + + ++ LLDC G S + S
Sbjct: 431 QNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSES 464
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 338 (124.0 bits), Expect = 3.4e-51, Sum P(3) = 3.4e-51
Identities = 100/280 (35%), Positives = 148/280 (52%)
Query: 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILK 192
IN L ++Q +G++++ LY N GIL D+MGLGKTIQTI + T L
Sbjct: 722 INGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIGLI------------TYLM 769
Query: 193 DNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSI-YHG-PN-RDMILEKLEACGVEVL 249
+ K G LII P S + NW E +W+ V I Y G P+ R ++ +L + VL
Sbjct: 770 ELK-RLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSLVPQLRSGKFNVL 828
Query: 250 ITSFDSYRIHGS-ILSEVNWEIVIVDEAHRLKNEKSKLYMAC-LELKTRNRIGLTGTIMQ 307
IT+++ Y I IL+++ W+ +IVDE HR+KN KL R+ LTGT +Q
Sbjct: 829 ITTYE-YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 887
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH-GQRLTAPERFIRIADERKQHLVAVL 366
NK+ EL+ L +++ P + F ++++ P G+R+ E I R+ H VL
Sbjct: 888 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET-ILIIRRLH--KVL 944
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
R +LLRR K+E L K + V+ C MS +QK YR +
Sbjct: 945 RPFLLRRLKKEVESQLPE-KVEYVIKCDMSAIQKVLYRHM 983
Score = 298 (110.0 bits), Expect = 3.4e-51, Sum P(3) = 3.4e-51
Identities = 63/161 (39%), Positives = 97/161 (60%)
Query: 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ 572
++ GK L++++ + ++LLF ++ ILE + + + + RLDG+T S R
Sbjct: 1049 RASGKFELLDRILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRA 1108
Query: 573 SLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
L+ FN S+ +FL+STRAGGLGLNL +A+ VVIFD +WNP QDLQAQDR+ R GQ+
Sbjct: 1109 MLLKKFNEEGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ 1168
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV-SGKLEKR 671
V V RL + S+EE + YK + + +G +++
Sbjct: 1169 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1209
Score = 40 (19.1 bits), Expect = 3.4e-51, Sum P(3) = 3.4e-51
Identities = 31/133 (23%), Positives = 54/133 (40%)
Query: 747 SKTRKSSDPEMARTSKP--LLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRP-- 802
+K R+ P + P L + M + D ++N + R+ E Q L SR
Sbjct: 1366 AKKRRGRPPAEKLSPNPPKLTKQMNAIV----DTVINYRDISGRQLSEVFVQ-LPSRKEL 1420
Query: 803 PPIHSKRRNLLDCADGKESLASSKDRK--NIEYSLLA--------RFMGMDVFEFSKWIL 852
P + R +D KE + S K R ++E ++ G ++E S +
Sbjct: 1421 PEYYELIRKPVDFKKIKERVRSHKYRSVSDLEKDVMLLCHNAQTYNLEGSQIYEDSIVLQ 1480
Query: 853 SATPSAREKLLQD 865
S SAR+K+ ++
Sbjct: 1481 SVFKSARQKIARE 1493
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 331 (121.6 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 70/175 (40%), Positives = 105/175 (60%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+++ GK+ ++KL+ + G K+L+FS VR LDILE +LI++ Y++ R+DG NLR
Sbjct: 779 IQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR 838
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 839 QAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 898
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGE 685
+ V V+RL++ S E ++ + K L + K GVQ + + E
Sbjct: 899 SKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVE 953
Score = 314 (115.6 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 92/287 (32%), Positives = 150/287 (52%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL+ +F L+
Sbjct: 460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF----------LRGIH 509
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMI--LEKL--EACG---- 245
G LII P S I NWE EF W+ N +YHG +R MI E + +A G
Sbjct: 510 ----GPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLS 565
Query: 246 ----VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGL 301
V+IT+F+ L +++W VI+DEAHRLKN KL + +++ L
Sbjct: 566 GVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLL 625
Query: 302 TGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361
TGT +QN + EL++L +++ P + F E + + LK +E+ +
Sbjct: 626 TGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGD-LK--------------TEEQVKK 670
Query: 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
L ++L+ +LRR K++ +L K++ ++ ++++QK+ YR +L+
Sbjct: 671 LQSILKPMMLRRLKDDVEKNLAP-KQETIIEVELTNIQKKYYRAILE 716
Score = 50 (22.7 bits), Expect = 6.4e-21, Sum P(4) = 6.4e-21
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 415 LINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLV-KLQQISNHLELIKPNPR 473
L KD+ C + L V C K + S + L+ P + Q + NH L P PR
Sbjct: 1125 LNEKDMEMICRALL--VYCVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPR 1182
Query: 474 DEPDKQRKD 482
K+ K+
Sbjct: 1183 GRKGKKTKN 1191
Score = 41 (19.5 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 858 AREKLLQDYRK 868
A EK+L+D+RK
Sbjct: 754 AEEKILEDFRK 764
Score = 40 (19.1 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 14/70 (20%), Positives = 28/70 (40%)
Query: 733 IVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEE 792
++S + T ST + S+ ++ ED + + D + +PG ++
Sbjct: 2537 LLSPPMATTCTSTAPASLSSTTKSGTAVTEKTAEDKPSSHDVKTDTLAEDKPGPGPFSDQ 2596
Query: 793 SIPQDLSSRP 802
S P +S P
Sbjct: 2597 SEPAITTSSP 2606
Score = 37 (18.1 bits), Expect = 6.4e-21, Sum P(4) = 6.4e-21
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 644 SLEELVYTRQVYKQQLSNIAVS 665
SLE ++Y ++V Q+ S+ S
Sbjct: 1702 SLESMMYGKKVLSQEPSSFQES 1723
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 320 (117.7 bits), Expect = 3.8e-51, Sum P(2) = 3.8e-51
Identities = 107/323 (33%), Positives = 160/323 (49%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
RL +Q EGV +L + + ++G ILGD+MGLGKT QTIA + G+ L D
Sbjct: 47 RLRSYQLEGVNWLARCFHCQNGCILGDEMGLGKTCQTIALFIYLAGR--------LND-- 96
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPN--RDMILEKL-EACGVEVLIT 251
+G LI+CP SV+ NW E R++ + +Y G R + + L + VL+T
Sbjct: 97 ---EGPFLILCPLSVLSNWTEEMERFAPGLSCVMYAGDKEERARLQQDLKQESRFHVLLT 153
Query: 252 SFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIM 311
+++ S L W +++VDEAHRLKN+ S L+ LE + LTGT +QN +
Sbjct: 154 TYEICLKDSSFLKSFPWSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGTPIQNSLQ 213
Query: 312 ELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371
ELY+L +V P L +E +F QR E+ A E L +L+ +LL
Sbjct: 214 ELYSLLSFVEP-DLFPKEQVGDFV-------QRYQDIEKESDSASE----LHKLLQPFLL 261
Query: 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ--LPEIQCLINKDLPCSCGSPLT 429
RR K E L K + V++ MS LQK+ Y+ +L L + + K + + L+
Sbjct: 262 RRVKAEVATELPK-KTEVVLYHGMSALQKKYYKAILMKDLDAFESEMAKKVKLQ--NVLS 318
Query: 430 QVECCKRLDNLDGCDSCPFCLVL 452
Q+ C L ++ PF L L
Sbjct: 319 QLRKCVDHPYLFEGETVPFFLTL 341
Score = 299 (110.3 bits), Expect = 3.8e-51, Sum P(2) = 3.8e-51
Identities = 60/146 (41%), Positives = 92/146 (63%)
Query: 521 LEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNS 580
L L + + ++G ++LLFS +MLDIL+ ++ +GYS+ R+DGS R + +F
Sbjct: 353 LAALSFLFLARGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQ 412
Query: 581 SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLL 640
P VFL+STRAGG+G+NL +A+ V+ D ++NP DLQA R+ R GQ + V V RL+
Sbjct: 413 QPVF-VFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLI 471
Query: 641 SAGSLEELVYTRQVYKQQLSNIAVSG 666
++EE+VY + K QL+N + G
Sbjct: 472 GRDTVEEIVYRKAASKLQLTNAIIEG 497
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 325 (119.5 bits), Expect = 3.9e-51, Sum P(3) = 3.9e-51
Identities = 71/182 (39%), Positives = 111/182 (60%)
Query: 500 NAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSF 559
NA + F + +++ GK+ ++KL+ + G ++L+FS VR LDILE +LI++ Y +
Sbjct: 512 NADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPY 571
Query: 560 SRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618
R+DG NLRQ+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP D
Sbjct: 572 ERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQND 631
Query: 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNI---AVSGKLEKRYFEG 675
LQAQ R R GQ + V ++RL++ S E ++ + K L ++SG+ + G
Sbjct: 632 LQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR--ENATNG 689
Query: 676 VQ 677
VQ
Sbjct: 690 VQ 691
Score = 316 (116.3 bits), Expect = 3.9e-51, Sum P(3) = 3.9e-51
Identities = 96/290 (33%), Positives = 146/290 (50%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N +L E+Q EGV +L + N IL D+MGLGKTIQ+I FL ++ LK
Sbjct: 203 NNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFLYEIY----------LKG 252
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPN---RDMILEKL---EACG-- 245
G L+I P S I NWE EF W+ NV +YHG R + L ++ + G
Sbjct: 253 IH----GPFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 308
Query: 246 ------VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRI 299
+IT+F+ L + W V++DEAHRLKN KL + +++
Sbjct: 309 IKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKV 368
Query: 300 GLTGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADER 358
LTGT +QN + EL++L ++ PG + F +EF D LK +E+
Sbjct: 369 LLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEFGD--LK--------------TEEQ 412
Query: 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
Q L A+L+ +LRR KE+ +L KE+ ++ ++++QK+ YR +L+
Sbjct: 413 VQKLQAILKPMMLRRLKEDVEKNLAP-KEETIIEVELTNIQKKYYRAILE 461
Score = 41 (19.5 bits), Expect = 3.9e-51, Sum P(3) = 3.9e-51
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 746 GSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESI 794
G R+ DPE T P +++ D+ N P KEESI
Sbjct: 1084 GEFDREDEDPEYKPTRTPFKDEI--------DEFANSPP---EDKEESI 1121
Score = 40 (19.1 bits), Expect = 5.0e-51, Sum P(3) = 5.0e-51
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 735 SSKDSNTLLSTGSKTRKSSDPEMARTSK 762
S +D L K+ +SS PE S+
Sbjct: 1476 SEEDEEEKLDDDDKSEESSQPEAGAVSQ 1503
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 363 (132.8 bits), Expect = 4.6e-51, Sum P(4) = 4.6e-51
Identities = 72/154 (46%), Positives = 105/154 (68%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L K Y F RLDGS +R
Sbjct: 789 IRSSGKLILLDKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIR 848
Query: 572 QSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQAQ R+ R GQ
Sbjct: 849 KQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ 908
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
K+ V ++RL++ G++EE + R K L ++ +
Sbjct: 909 KKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 942
Score = 279 (103.3 bits), Expect = 4.6e-51, Sum P(4) = 4.6e-51
Identities = 79/252 (31%), Positives = 134/252 (53%)
Query: 132 SINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTIL 191
S N L ++Q EG+ +L + + IL D+MGLGKTIQTI+FL+ +F + +
Sbjct: 481 SENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLY----- 535
Query: 192 KDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLE 242
G L++ P S + +W+ EF W+ NV +Y G +R+MI E + +
Sbjct: 536 --------GPFLVVVPLSTLTSWQREFEVWAPEINVVVYIGDLMSRNMIREYEWIHSQSK 587
Query: 243 ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLT 302
LIT+++ ++L ++W + VDEAHRLKN+ S LY ++ K+ +R+ +T
Sbjct: 588 RLKFNALITTYEILLKDKAVLGSISWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLIT 647
Query: 303 GTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG-QRL-TAPERFI--RIADER 358
GT +QN + EL++L ++ P E F E + + ++G Q L E F+ R+ +
Sbjct: 648 GTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV 707
Query: 359 KQHLVAVLRKYL 370
++ L A + + L
Sbjct: 708 EKSLPAKVEQIL 719
Score = 235 (87.8 bits), Expect = 1.7e-46, Sum P(4) = 1.7e-46
Identities = 65/217 (29%), Positives = 114/217 (52%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVEVLI 250
G L++ P S + +W+ EF W+ NV +Y G +R+MI E + + LI
Sbjct: 536 GPFLVVVPLSTLTSWQREFEVWAPEINVVVYIGDLMSRNMIREYEWIHSQSKRLKFNALI 595
Query: 251 TSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310
T+++ ++L ++W + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +QN +
Sbjct: 596 TTYEILLKDKAVLGSISWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 655
Query: 311 MELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYL 370
EL++L ++ P E + +F ++ HG+ + Q L VL +L
Sbjct: 656 KELWSLLHFIMPEKF---EFWEDFEED---HGKG----------RENGYQSLHKVLEPFL 699
Query: 371 LRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
LRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 700 LRRVKKD-VEKSLPAKVEQILRVEMSALQKQYYKWIL 735
Score = 42 (19.8 bits), Expect = 4.6e-51, Sum P(4) = 4.6e-51
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDE 475
L +++L++ NH LIKP +E
Sbjct: 754 LNIVMELKKCCNHCYLIKPPEENE 777
Score = 37 (18.1 bits), Expect = 4.6e-51, Sum P(4) = 4.6e-51
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 46 SSLAQQLQRLGETYNF-SLPQQNPETRREKAPVEKSNVFD 84
SS + + Q E+ + S QQ P +EK +K + D
Sbjct: 51 SSESSESQSESESESTGSKSQQTPPETKEKPASKKERIAD 90
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 330 (121.2 bits), Expect = 5.6e-51, Sum P(3) = 5.6e-51
Identities = 67/146 (45%), Positives = 95/146 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
++S GK+ ++KL+ + G K+L+FS VR LDILE +LI K Y + R+DG NLR
Sbjct: 1177 IQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLR 1236
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
Q+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP DLQAQ R R GQ
Sbjct: 1237 QAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQ 1296
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYK 656
+ V V+RL++ S E ++ R K
Sbjct: 1297 NKAVKVYRLVTRNSYEREMFDRASLK 1322
Score = 314 (115.6 bits), Expect = 5.6e-51, Sum P(3) = 5.6e-51
Identities = 95/289 (32%), Positives = 149/289 (51%)
Query: 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNK 195
+L E+Q EG+ +L + N+ IL D+MGLGKTIQ+I FL + +L
Sbjct: 858 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI----------LL---- 903
Query: 196 VDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP--NRDMILEKLE----------- 242
+G LII P S I NWE EF W+ NV +YHG +R MI ++ E
Sbjct: 904 TGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMI-QQYEMYFRDSQGRII 962
Query: 243 --ACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIG 300
A + +IT+F+ L+ ++W VI+DEAHRLKN+ KL + +++
Sbjct: 963 RGAYRFQAIITTFEMILGGCGELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1022
Query: 301 LTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI-ADERK 359
LTGT +QN + EL++L HF E PL+ T + F + +E+
Sbjct: 1023 LTGTPLQNTVEELFSLL------------HFLE----PLRFPSESTFMQEFGDLKTEEQV 1066
Query: 360 QHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
Q L A+L+ +LRR KE+ + + KE+ ++ ++++QK+ YR +L+
Sbjct: 1067 QKLQAILKPMMLRRLKED-VEKKLAPKEETIIEVELTNIQKKYYRAILE 1114
Score = 43 (20.2 bits), Expect = 4.2e-21, Sum P(3) = 4.2e-21
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 459 QQISNHLELIKPNPRDEPDKQRK 481
+++ NHL L P PR K+ K
Sbjct: 1565 RELQNHLGLSAPVPRGRKGKKVK 1587
Score = 40 (19.1 bits), Expect = 5.6e-51, Sum P(3) = 5.6e-51
Identities = 17/82 (20%), Positives = 32/82 (39%)
Query: 725 GFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQP 784
G G + ++ ++ + T + P + +P L G + + IV K+
Sbjct: 2374 GALGQQQYLTRLRELQSTSETSLVNLPKAVPASGTSIQPTLGANGAILD--SQPIVKKRR 2431
Query: 785 GFQRKKEESIPQDLSSRPPPIH 806
G +R E + L+ PP H
Sbjct: 2432 GRRRNVEGADILFLNRNKPPNH 2453
Score = 37 (18.1 bits), Expect = 8.6e-21, Sum P(3) = 8.6e-21
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 595 GLGLNLVSANRVVIFDPNWNPAQDLQA 621
GL L+L + ++ FD N + DL +
Sbjct: 2800 GLNLHLPTLSQSNAFDVQKNKSDDLDS 2826
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 333 (122.3 bits), Expect = 6.0e-51, Sum P(2) = 6.0e-51
Identities = 75/173 (43%), Positives = 107/173 (61%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+KS GK L+ ++ KGDK+L+FS MLDILE +L +GYS+ RLDG TP R
Sbjct: 750 LKS-GKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDR 808
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
Q ++++FN S VFL+STRAGGLG+NL SAN ++I D ++NP D QA+DR R GQ+
Sbjct: 809 QEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMGQE 868
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKEFQG 684
+ V V RL+S G++E + K QL G + + +++ KE +G
Sbjct: 869 KPVHVTRLVSKGTVEVGMLALAKKKLQLEKQVTDGVKGQLDEDALRELKEEEG 921
Score = 285 (105.4 bits), Expect = 6.0e-51, Sum P(2) = 6.0e-51
Identities = 87/292 (29%), Positives = 143/292 (48%)
Query: 127 IQVPA-SINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDES 185
+Q+P C L ++Q GVK+L +Y ILGD+MGLGKTIQ +AFL+
Sbjct: 383 LQLPLLKEGCTLHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLS-------- 434
Query: 186 SDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPN--RDMILEKL- 241
LK ++ K G LI+ PSS I+NW EF +W + + Y+G R + ++
Sbjct: 435 ----YLK--QIGKTGPHLIVVPSSTIENWIGEFHKWCPSIQLLTYYGSQDERKHLRHRVK 488
Query: 242 -EACGVEVLITSFD---SYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRN 297
+ ++V++T+++ S + VI DE H LKN S+ Y +++K +
Sbjct: 489 KQKDHIDVILTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLKNCDSERYRGLMKVKGKK 548
Query: 298 RIGLTGTIMQNKIMELYNLFDWVAPGSLGTR-EHFREFYDEPLKHGQRLTAPERFIRIAD 356
+I LTGT +QN ++EL +L +V E + G L + + D
Sbjct: 549 KILLTGTPLQNNLIELISLMYFVLSKVFNKYCEDITHLLQHFKQLGPALDTKNKALYQQD 608
Query: 357 ERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
R + A+L+ Y+LRR K + +G L K + ++ M QK+ Y +++
Sbjct: 609 -RIEEAKAILQPYILRRLKNQVLGSLP-SKSEQIIEVEMKKPQKQLYDNIVE 658
Score = 37 (18.1 bits), Expect = 6.2e-25, Sum P(2) = 6.2e-25
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 183 DESSDSTILKDNKVDKKG 200
D+ S+ + D ++ +KG
Sbjct: 187 DDESEDDFINDEEISEKG 204
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 326 (119.8 bits), Expect = 7.6e-51, Sum P(3) = 7.6e-51
Identities = 68/173 (39%), Positives = 107/173 (61%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V+ CGK+ L++++ + ++L FS R+LD++E +L KGY + RLDG T R
Sbjct: 1069 VRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDR 1128
Query: 572 QSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+L+D FN S S +FL+S RAGG+G+NL +A+ V++FD +WNP DLQAQ R+ R GQ
Sbjct: 1129 GALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQ 1188
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKLEKRYFEGVQDCKEF 682
K+ V+V R + S+EE V +K ++N +++ G + +D KE+
Sbjct: 1189 KKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNN--TSAEDRKEY 1239
Score = 319 (117.4 bits), Expect = 7.6e-51, Sum P(3) = 7.6e-51
Identities = 88/291 (30%), Positives = 153/291 (52%)
Query: 126 IIQVPAS-INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDE 184
I + P+S + +L E+Q G+++L LY N GIL D+MGLGKT+Q I+ +
Sbjct: 742 INEQPSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLIC------- 794
Query: 185 SSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHG-PN--RDMILEK 240
L + K D+ G L++ PSSV+ W+ E + W+ + + +Y G P+ R + E+
Sbjct: 795 -----YLMETKNDR-GPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQ 848
Query: 241 LEACGVEVLITSFDSYRI--HGSI-LSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRN 297
+ VL+T+++ Y + H LS+++W +I+DE HR+KN KL + +
Sbjct: 849 IVHQKFNVLLTTYE-YLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSH 907
Query: 298 RIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADE 357
R+ LTGT +QN + EL+ L +++ P + E F +++++P + +A E + +
Sbjct: 908 RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEEN 967
Query: 358 RK--QHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
L VLR ++LRR K + L K + ++ C S QK +R+
Sbjct: 968 LLIINRLHQVLRPFVLRRLKHKVENELPE-KIERLIRCEASAYQKLLMKRV 1017
Score = 51 (23.0 bits), Expect = 5.3e-23, Sum P(3) = 5.3e-23
Identities = 27/113 (23%), Positives = 49/113 (43%)
Query: 275 EAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREF 334
E+ L ++ S + +ELK + L + + YN F +A EH + +
Sbjct: 504 ESVSLSDDISAKTKSVIELKKLQLLNLQRRLRSEFV---YNFFKPIATDV----EHLKSY 556
Query: 335 YDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKE 387
KHG+R+ E++ + E +Q R+ +R ++E G L + KE
Sbjct: 557 KKH--KHGRRIKQLEKYEQKMKEERQ------RR--IRERQKEFFGGLEVHKE 599
Score = 48 (22.0 bits), Expect = 4.6e-23, Sum P(2) = 4.6e-23
Identities = 16/55 (29%), Positives = 22/55 (40%)
Query: 434 CKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDE----PDKQRKDAE 484
C+ +D GC S P P + + HLE + D P + KDAE
Sbjct: 3476 CELVDVSPGCSSQPEVKFPPSPDAVGGMDVHLETVVTEDTDSNSSLPKTEEKDAE 3530
Score = 44 (20.5 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 430 QVEC--CKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIK 469
QVE C +D+ GC S P + P ++ HLE K
Sbjct: 3307 QVETTGCGLVDDSTGCSSEPQVQLPPSAEPMEGTHMHLEETK 3348
Score = 41 (19.5 bits), Expect = 7.6e-51, Sum P(3) = 7.6e-51
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 727 KGLETHIVSSKDSNTLLSTGSKTRKS 752
+G+ H+ ++ +S T+++ GS+ S
Sbjct: 3411 EGMHIHLEAAMNSETVVTEGSELPSS 3436
Score = 37 (18.1 bits), Expect = 2.0e-50, Sum P(3) = 2.0e-50
Identities = 29/100 (29%), Positives = 46/100 (46%)
Query: 749 TRKSSDP--EMARTSKPLLEDM--G-IVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRPP 803
T KS +P E A S L D+ G + + D +K+PG + + S+ Q +P
Sbjct: 2866 TEKSKEPGTESADVSLHQLADIQPGPSILVDQMDTEKSKEPGTE-SADVSLHQLADIQPG 2924
Query: 804 P------IHSKR-RN----LLDCADGKESLASSKDRKNIE 832
P + ++ +N L AD + SL+ S +KNIE
Sbjct: 2925 PSILVDQMDTEEFKNPDVSLHQLADIEPSLSISAVQKNIE 2964
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 368 (134.6 bits), Expect = 8.2e-51, Sum P(3) = 8.2e-51
Identities = 100/346 (28%), Positives = 178/346 (51%)
Query: 71 RREKAPVEKSNVFDDXXXXXXXXXXXFGRHQLGQFQFDHTGPFEPLV--LSKDGEYPIIQ 128
R +K +E +V + + G +E L L G+ P +
Sbjct: 383 RADKYGLEMKDVLQQHLSNTAETEIVEEDSPFNDIEIELDGYYEELFQKLLHIGDIPKVD 442
Query: 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDS 188
VP+S++ L +Q+ G+++L L K G +L DDMGLGK+IQTI +L +
Sbjct: 443 VPSSLHATLRPYQQHGIEWLLYLRKLGFGALLADDMGLGKSIQTITYLLYI--------- 493
Query: 189 TILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHGPNR---DMILEKLEAC 244
K+N + + G LI+ P+SV+ NW+ EF R++ V +++G NR + + L++
Sbjct: 494 ---KENNL-QTGPALIVAPTSVLGNWQKEFERFAPNLRVQLHYGSNRAKGESFKDFLQSA 549
Query: 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGT 304
+V++TS+ ++ LS + W+ VI+DEA +KN +K A L+ ++I LTGT
Sbjct: 550 --DVVLTSYALAQLDEEELSTLCWDAVILDEAQNIKNPHTKQSKAVRNLQANHKIALTGT 607
Query: 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERK-QHLV 363
M+N++ EL+++FD++ G LG+ F+ + P++ + DE K Q +
Sbjct: 608 PMENRLAELWSIFDFINHGYLGSLGQFQRRFVSPIEKDR------------DEGKIQQVQ 655
Query: 364 AVLRKYLLRRTK-EETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
+ +LLRRTK ++T+ + K++ +C ++ Q Y +L+Q
Sbjct: 656 RFISPFLLRRTKKDQTVALNLPDKQEQKAYCPLTGEQASLYEQLVQ 701
Score = 235 (87.8 bits), Expect = 8.2e-51, Sum P(3) = 8.2e-51
Identities = 52/150 (34%), Positives = 87/150 (58%)
Query: 517 KMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRK-GYSFSRLDGSTPSNLRQSLV 575
K L +L+ + + + L+F+ + M ++L+ L G L+GS P R ++
Sbjct: 751 KTSTLMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMI 810
Query: 576 DDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635
+ F + + +F++S +AGG GLNL +AN V+ +D WNPA + QA DR++R GQKR V
Sbjct: 811 EQFQNG-TYDIFILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQKRFVH 869
Query: 636 VFRLLSAGSLEELVYTRQVYKQQLSNIAVS 665
V +L++ G+LEE + KQ L+N ++
Sbjct: 870 VHKLITTGTLEEKIDEMLERKQSLNNAVIT 899
Score = 56 (24.8 bits), Expect = 8.2e-51, Sum P(3) = 8.2e-51
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 435 KRLDNLDGCDSCPFCLVLPCLVKLQQISNH--LELIKPNPRDEPDKQRKDAELASAV 489
+ ++ L G + F L++ L KL+QI NH L L + P+D ++ K + L +
Sbjct: 705 QNVEGLSGIERRGFILLM--LNKLKQICNHPALYLKETEPKDIIERSMKTSTLMELI 759
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 325 (119.5 bits), Expect = 1.1e-50, Sum P(3) = 1.1e-50
Identities = 71/182 (39%), Positives = 111/182 (60%)
Query: 500 NAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSF 559
NA + F + +++ GK+ ++KL+ + G ++L+FS VR LDILE +LI++ Y +
Sbjct: 1275 NADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPY 1334
Query: 560 SRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618
R+DG NLRQ+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP D
Sbjct: 1335 ERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQND 1394
Query: 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNI---AVSGKLEKRYFEG 675
LQAQ R R GQ + V ++RL++ S E ++ + K L ++SG+ + G
Sbjct: 1395 LQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR--ENATNG 1452
Query: 676 VQ 677
VQ
Sbjct: 1453 VQ 1454
Score = 316 (116.3 bits), Expect = 1.1e-50, Sum P(3) = 1.1e-50
Identities = 96/290 (33%), Positives = 146/290 (50%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N +L E+Q EGV +L + N IL D+MGLGKTIQ+I FL ++ LK
Sbjct: 966 NNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFLYEIY----------LKG 1015
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPN---RDMILEKL---EACG-- 245
G L+I P S I NWE EF W+ NV +YHG R + L ++ + G
Sbjct: 1016 IH----GPFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 1071
Query: 246 ------VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRI 299
+IT+F+ L + W V++DEAHRLKN KL + +++
Sbjct: 1072 IKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKV 1131
Query: 300 GLTGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADER 358
LTGT +QN + EL++L ++ PG + F +EF D LK +E+
Sbjct: 1132 LLTGTPLQNTVEELFSLLHFLEPGRFPSETTFMQEFGD--LK--------------TEEQ 1175
Query: 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
Q L A+L+ +LRR KE+ +L KE+ ++ ++++QK+ YR +L+
Sbjct: 1176 VQKLQAILKPMMLRRLKEDVEKNLAP-KEETIIEVELTNIQKKYYRAILE 1224
Score = 41 (19.5 bits), Expect = 1.1e-50, Sum P(3) = 1.1e-50
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 746 GSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESI 794
G R+ DPE T P +++ D+ N P KEESI
Sbjct: 1847 GEFDREDEDPEYKPTRTPFKDEI--------DEFANSPP---EDKEESI 1884
Score = 40 (19.1 bits), Expect = 1.4e-50, Sum P(3) = 1.4e-50
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 735 SSKDSNTLLSTGSKTRKSSDPEMARTSK 762
S +D L K+ +SS PE S+
Sbjct: 2239 SEEDEEEKLDDDDKSEESSQPEAGAVSQ 2266
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 347 (127.2 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 68/166 (40%), Positives = 108/166 (65%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GK L++++ ++G K+LLFS RMLDIL + + ++FSRLDGS + R
Sbjct: 596 VTNSGKFLILDRMLPELKARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSER 655
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ + FN+ P +FL+STRAGGLG+NL +A+ V+I+D +WNP DLQAQDR R GQ
Sbjct: 656 EKNMHSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQT 715
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQ 677
+ V+V+RL++A ++++ + R K++L + + K +F+G Q
Sbjct: 716 KPVVVYRLVTANTIDQKIVERAAAKRKLEKLII----HKNHFKGGQ 757
Score = 264 (98.0 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 89/308 (28%), Positives = 151/308 (49%)
Query: 113 FEPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNKHGGILGDDMGLGKTIQ 171
F+P V +G+ Q P ++ +Q EG+++L L++N GIL D+MGLGKT+Q
Sbjct: 200 FDP-VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 258
Query: 172 TIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYH 230
IA +A + + G L+ P S + NW EF R++ +YH
Sbjct: 259 CIATIALMIQRGVP--------------GPFLVCGPLSTLPNWMAEFQRFTPDIPTMLYH 304
Query: 231 GPNRDM--ILEKL-EACGV----EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283
G ++ +++ + + G V+ITSF+ + L W+ +IVDE HR+KN K
Sbjct: 305 GTQQERRKLVKNIHKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMK 364
Query: 284 SKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQ 343
+L N++ LTGT +QN + EL++L +++ P + F ++D
Sbjct: 365 CRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDIT----- 419
Query: 344 RLTAPERFIRIADERKQ---HLV-AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQ 399
L+ I IA ER+Q H++ +L +LLRR K + + + K + VV+ +S Q
Sbjct: 420 SLSETAEDI-IAKEREQNVLHMLHQILTPFLLRRLKSD-VALEVPPKREVVVYAPLSKKQ 477
Query: 400 KRAYRRLL 407
+ Y ++
Sbjct: 478 EIFYTAIV 485
Score = 43 (20.2 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 40 PRRPPKSSLA-QQLQRLGETYNFSLPQQNPETRREKAPVEKSNV 82
PRR + S+ ++ + Q PE RE+A VE +N+
Sbjct: 509 PRRRARKSINYSKIDDFPNELEKLISQMQPEVDRERAVVE-TNI 551
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 343 (125.8 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
Identities = 68/166 (40%), Positives = 106/166 (63%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GK L++++ +G K+LLFS RMLDIL + + ++FSRLDGS R
Sbjct: 595 VTNSGKFLILDRMLPELKIRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTER 654
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ + FN+ P +FL+STRAGGLG+NL +A+ V+I+D +WNP DLQAQDR R GQ
Sbjct: 655 EKNMHSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQT 714
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQ 677
+ V+V+RL++A ++++ + R K++L + + K +F+G Q
Sbjct: 715 KPVVVYRLVTANTIDQKIVERAAAKRKLEKLII----HKNHFKGGQ 756
Score = 267 (99.0 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
Identities = 89/308 (28%), Positives = 150/308 (48%)
Query: 113 FEPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNKHGGILGDDMGLGKTIQ 171
F+P V +G+ Q P ++ +Q EG+++L L++N GIL D+MGLGKT+Q
Sbjct: 199 FDP-VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 257
Query: 172 TIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYH 230
IA +A + + G L+ P S + NW EF R++ +YH
Sbjct: 258 CIATIALMIQRGVP--------------GPFLVCGPLSTLPNWMAEFQRFTPEIPTMLYH 303
Query: 231 GPNRDM------ILEKLEACGVE-VLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283
G ++ I ++ + V+ITSF+ ++L W+ +IVDE HR+KN K
Sbjct: 304 GSQQERRKLVNHIHKRKGTLQIHPVVITSFEIAMRDRNVLQHCYWKYLIVDEGHRIKNMK 363
Query: 284 SKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQ 343
+L N++ LTGT +QN + EL++L +++ P + F ++D
Sbjct: 364 CRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDIT----- 418
Query: 344 RLTAPERFIRIADERKQ---HLV-AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQ 399
L+ I IA ER+Q H++ +L +LLRR K + + + K + VV+ +S Q
Sbjct: 419 SLSETAEDI-IAKEREQNVLHMLHQILTPFLLRRLKSD-VALEVPPKREVVVYAPLSKKQ 476
Query: 400 KRAYRRLL 407
+ Y ++
Sbjct: 477 EVFYTAIV 484
Score = 37 (18.1 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 63 LPQQNPETRREKAPVEKSNV 82
+ Q PE RE+A VE +N+
Sbjct: 532 ISQIQPEVDRERAVVE-TNI 550
>WB|WBGene00000803 [details] [associations]
symbol:csb-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0004427 "inorganic
diphosphatase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009650
GeneTree:ENSGT00590000083118 KO:K10841 EMBL:Z81089 PIR:T22595
RefSeq:NP_510607.2 ProteinModelPortal:Q93781 SMR:Q93781
EnsemblMetazoa:F53H4.1 GeneID:181674 KEGG:cel:CELE_F53H4.1
UCSC:F53H4.1 CTD:181674 WormBase:F53H4.1 HOGENOM:HOG000020742
InParanoid:Q93781 OMA:GDICNHP NextBio:914906 Uniprot:Q93781
Length = 957
Score = 311 (114.5 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 95/322 (29%), Positives = 161/322 (50%)
Query: 128 QVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSD 187
+V A + +L + Q+EGV++L K ++ GGIL D+MGLGKTIQ++ FL ++ + +
Sbjct: 185 KVNAGVWNKLHKFQQEGVEWLQKKTDHRSGGILADEMGLGKTIQSVVFLRSI----QETA 240
Query: 188 STILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYH-----GPNRDM---IL 238
T K +D LI+C S+I W E ++W V + H G D I
Sbjct: 241 RTHYKTTGLDT---ALIVCHVSIIAQWIKELNQWFPKARVFLLHSHCSTGRQEDYVGSIF 297
Query: 239 EKLEACGVE-----VLITSFDSY-RIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLE 292
KL+ E +++T++ + ++ I+ + W++VI+DE H ++NE +K +A +
Sbjct: 298 RKLQRRRKEYPDGAIILTTYSLFTKLKKPIVKHL-WQVVILDEGHYIRNENTKCSIAMRK 356
Query: 293 LKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLT-APERF 351
L T R LTGT QN++ E + L D+V PG L F + + G L +PE
Sbjct: 357 LMTTQRFILTGTPFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSPEAA 416
Query: 352 IRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVF-CTMSDLQKRAYRRLLQLP 410
+ A E L ++ +LRR +E+ L + ++ +V C +S Q+R Y
Sbjct: 417 AK-AYECLVALHIAVKPLILRRLQEDHKEVLQLPEKQEIVLSCELSKRQRRLYMEYGNSH 475
Query: 411 EIQCLINKDLPCSCG-SPLTQV 431
++ +I + L G + LT +
Sbjct: 476 QVNEIIERRLKAFVGINHLTNI 497
Score = 302 (111.4 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 60/150 (40%), Positives = 94/150 (62%)
Query: 512 VKSCGKMRALEKLMYSW-ASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNL 570
+K GK+ KL W S ++++LF+ ++ ++E FL KG L G+ +
Sbjct: 517 IKDSGKVEMTFKLFDDWFKSPTNRVILFTQRRTVITMMEYFLAEKGIKCVSLTGADSAAA 576
Query: 571 RQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
R ++ F S +VFL++TRAGGLGLNL AN+V+IFDP+WNP D QA++R +R GQ
Sbjct: 577 RPKIIKKFEDDVSIKVFLMTTRAGGLGLNLTCANKVIIFDPDWNPQADNQAKNRIYRMGQ 636
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLS 660
V ++RL+S G++E+L + +QV K+ L+
Sbjct: 637 TNDVAIYRLVSNGTIEDLKFFKQVQKENLA 666
Score = 41 (19.5 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 559 FSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTR 592
F + S + L DD+ SP+ +V L + R
Sbjct: 514 FGSIKDSGKVEMTFKLFDDWFKSPTNRVILFTQR 547
Score = 37 (18.1 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 543 RMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLI 589
R LD L K F+ + G+ ++ + V D + Q+F I
Sbjct: 843 RELDRLVKLATDMLQFFNGVPGAKEDSIHRIFVKDSDRKDPTQMFFI 889
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 347 (127.2 bits), Expect = 2.7e-50, Sum P(3) = 2.7e-50
Identities = 68/155 (43%), Positives = 104/155 (67%)
Query: 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV 575
GK++ L+KL+ G ++L++S +M++ILE F+I + Y + RLDGS+ + R+ +V
Sbjct: 1767 GKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDMV 1826
Query: 576 DDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635
DDF S PS FL+STRA G+G+NL SA+ V+ +D +WNP D QAQDR+ R GQ R V
Sbjct: 1827 DDFQSDPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPVT 1886
Query: 636 VFRLLSAGSLEELVYTRQVYKQQLSNIAVSG-KLE 669
V+RL++ ++EE + R K Q+ +I ++G K E
Sbjct: 1887 VYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFE 1921
Score = 284 (105.0 bits), Expect = 2.7e-50, Sum P(3) = 2.7e-50
Identities = 79/290 (27%), Positives = 142/290 (48%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESS 186
++ P +N L +Q +G+ ++ LY GIL D+MGLGKTIQ+IA LA + +
Sbjct: 1152 LKQPTILNADLKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAHL-----AE 1206
Query: 187 DSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRDMIL------- 238
+ I G LI+ P S + NW+ EF+++ F V Y G +
Sbjct: 1207 EKNIW--------GPFLIVTPKSTLHNWKNEFAKFVPAFKVIPYWGTQQQRTTIRKYWNP 1258
Query: 239 EKL--EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTR 296
+KL VLITS++ + W+ +++DEAH +K+ S + + R
Sbjct: 1259 KKLYHRNSPFHVLITSYNVIVRDEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMSFNCR 1318
Query: 297 NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIAD 356
NR+ LTGT +QN + EL+ L ++ P + + F E++ + +++ + +
Sbjct: 1319 NRLLLTGTPIQNSMAELWALLHFIMPTFFDSHDEFAEWFSKDIENHAMSQGG-----LNE 1373
Query: 357 ERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
+ L +L+ ++LRR K + + + M K + V+C ++ QK+ Y+ +
Sbjct: 1374 HQLNRLHMILKPFMLRRIKRD-VENEMPSKTEVEVYCNLTHRQKKLYQSI 1422
Score = 41 (19.5 bits), Expect = 2.7e-50, Sum P(3) = 2.7e-50
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 725 GFKGLETHIVSSKDSNTLLSTGSKTRKSSDPEMARTS 761
G G +T S+ + T +T S T ++DP TS
Sbjct: 2025 GDGGGDTSTAST--TTTATTTSSTTSSTNDPSSTSTS 2059
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 361 (132.1 bits), Expect = 4.2e-50, Sum P(2) = 4.2e-50
Identities = 91/207 (43%), Positives = 125/207 (60%)
Query: 499 GNAQNESFI-GLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGY 557
G E+ + GL + S GKM L++L+ G ++L+FS VRMLDIL +L KG
Sbjct: 679 GKMTRENVLRGL--IMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGI 736
Query: 558 SFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPA 616
+F RLDG+ PS R+ +D FNS S VFL+STRAGGLG+NL++A+ VVIFD +WNP
Sbjct: 737 NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQ 796
Query: 617 QDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS-GKLE-KRYFE 674
DLQA R+ R GQK HV+V+RL+S ++EE V R K L +S G + +Y +
Sbjct: 797 ADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTK 856
Query: 675 GVQ-DCKEFQGEL-FGICNLFRDLSDN 699
+ + E L FG N+F +DN
Sbjct: 857 KNEPNAGELSAILKFGAGNMFT-ATDN 882
Score = 253 (94.1 bits), Expect = 4.2e-50, Sum P(2) = 4.2e-50
Identities = 83/295 (28%), Positives = 140/295 (47%)
Query: 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA-AVFGKDES 185
+Q P L + Q G+ ++ L+ GIL D+MGLGKT+QT+AF++ +F + ++
Sbjct: 366 VQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQN 425
Query: 186 SDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHG--PNRDMILE--- 239
G +I+ P S + W F +W+ N Y G +RD I E
Sbjct: 426 --------------GPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEF 471
Query: 240 --KLEACGVE-----VLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLE 292
A G + VL+T+++ + L + W+ + VDEAHRLKN +S LY +
Sbjct: 472 YTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNS 531
Query: 293 LKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFI 352
K NR+ +TGT +QN I EL L +++ PG R D+ + + E +I
Sbjct: 532 FKVANRMLITGTPLQNNIKELAALVNFLMPG--------RFTIDQEIDFENQDEEQEEYI 583
Query: 353 RIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
R ++ ++LRR K++ + + K + ++ +SD+Q Y+ +L
Sbjct: 584 HDLHRR-------IQPFILRRLKKD-VEKSLPSKTERILRVELSDVQTEYYKNIL 630
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 315 (115.9 bits), Expect = 5.0e-50, Sum P(2) = 5.0e-50
Identities = 86/307 (28%), Positives = 163/307 (53%)
Query: 119 SKDGEYPIIQV----PASIN--CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQT 172
S++G PI++ P ++ L ++Q+ G+ +L LY+NK IL DDMGLGKT Q
Sbjct: 548 SRNGRKPIVKFFKGKPRLLSPEISLKDYQQTGINWLNLLYQNKMSCILADDMGLGKTCQV 607
Query: 173 IAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS-TFNVSIYHG 231
I+F A LK ++++ G L++ PSS ++NW EF +++ + Y+G
Sbjct: 608 ISFFA------------YLK--QINEPGPHLVVVPSSTLENWLREFQKFAPALKIEPYYG 653
Query: 232 P--NRDMILEKLE--ACGVEVLITSFD---SYRIHGSILSEVNWEIVIVDEAHRLKNEKS 284
R+ + + LE A +V++T+++ + S L N+ +V+ DE H LKN S
Sbjct: 654 SLQEREELRDILERNAGKYDVIVTTYNLAAGNKYDVSFLKNRNFNVVVYDEGHMLKNSTS 713
Query: 285 KLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQR 344
+ + ++++ R+ LTGT +QN + EL +L +++ P ++ +E +D K +
Sbjct: 714 ERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPNLFISK---KESFDAIFKQRAK 770
Query: 345 LTAPERFIR--IADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRA 402
T + +A E +++ ++LRR K++ + HL K ++ +C ++ +QK+
Sbjct: 771 TTDDNKNHNPLLAQEAITRAKTMMKPFILRRRKDQVLKHLPP-KHTHIQYCELNAIQKKI 829
Query: 403 YRRLLQL 409
Y + +Q+
Sbjct: 830 YDKEIQI 836
Score = 297 (109.6 bits), Expect = 5.0e-50, Sum P(2) = 5.0e-50
Identities = 65/146 (44%), Positives = 94/146 (64%)
Query: 516 GKMRALEKLMYSW-ASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574
GK+ AL+KL+ + K +K+L+FS ++LDILE L Y F RLDGST N RQ L
Sbjct: 949 GKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDRQLL 1008
Query: 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634
+D F +F++ST+AGG G+NLV AN V+IFD ++NP D QA DR+ R GQ + V
Sbjct: 1009 IDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEV 1068
Query: 635 IVFRLLSAGSLEELVYTRQVYKQQLS 660
+ L++ S+EE ++ Q+ K +L+
Sbjct: 1069 NITTLITKDSIEEKIH--QLAKNKLA 1092
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 312 (114.9 bits), Expect = 5.8e-50, Sum P(2) = 5.8e-50
Identities = 59/153 (38%), Positives = 95/153 (62%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
+ GK+ L++L+ G +IL++ RM+ I E++L K Y + RLDGST R
Sbjct: 1232 IAESGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESR 1291
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ +V + ++P +F++STRAGGLGLNL SA+ V+ +D +WNP D QA DR+ R GQ
Sbjct: 1292 REMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQT 1351
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
+ V VFRL++ ++E+ + R K+++ + V
Sbjct: 1352 KQVKVFRLVTRNTIEQKILERAKEKEEIQKLVV 1384
Score = 302 (111.4 bits), Expect = 5.8e-50, Sum P(2) = 5.8e-50
Identities = 86/297 (28%), Positives = 153/297 (51%)
Query: 122 GEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFG 181
G+ I Q P + C L E+Q +G+ +L LY+ GIL D+MGLGKT+Q+I+ LA
Sbjct: 658 GDITIPQ-PNMLKCTLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLA---- 712
Query: 182 KDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW-STFNVSIYHGPNRDM-ILE 239
L + + G L++ P+S + NW+ E +++ F V Y G +D IL
Sbjct: 713 --------YLAET-YNMWGPFLVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILR 763
Query: 240 KL---------EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMAC 290
K + VL+TS+ + ++ W+ +I+DEA +K+ S + +
Sbjct: 764 KFWDRKSLRYDKDSPFHVLVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSL 823
Query: 291 LELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK-HGQRLTAPE 349
L L RNR+ LTGT +QN + EL+ L ++ P + + F +++ + ++ H Q T+
Sbjct: 824 LNLTCRNRLLLTGTPIQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNTS-- 881
Query: 350 RFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRL 406
+ +++ + L +L+ ++LRR K+ L K + V+C ++ QK+ Y++L
Sbjct: 882 ----LDEQQLRRLHMILKPFMLRRIKKNVQSELG-DKVEIDVYCDLTTRQKKLYQQL 933
Score = 46 (21.3 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 21/111 (18%), Positives = 50/111 (45%)
Query: 183 DESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNV---SIYHGPNRDMI-- 237
DE+S+ T + K D + I P S ++ + S T + S++ N ++I
Sbjct: 104 DENSNPTTISSLKKDTNSIIASILPES----YQFDNSYTPTIDQKYKSVFES-NINVINQ 158
Query: 238 LEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDE--AHRLKNEKSKL 286
L++ + G + + FD +++ +++ + +D A + + +K+
Sbjct: 159 LDQYQQMGHHLKLMKFDEVKLNNYLINTGQFASNYIDRVVAEDISSRNNKI 209
Score = 37 (18.1 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 451 VLPCLVKLQQISNHLELIK 469
V+ L + QQ+ +HL+L+K
Sbjct: 155 VINQLDQYQQMGHHLKLMK 173
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 340 (124.7 bits), Expect = 6.6e-50, Sum P(2) = 6.6e-50
Identities = 67/166 (40%), Positives = 106/166 (63%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
V + GK L++++ +G K+LLFS MLDIL + + ++FSRLDGS + R
Sbjct: 595 VTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 654
Query: 572 QSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631
+ + FN+ P +FL+STRAGGLG+NL +A+ V+I+D +WNP DLQAQDR R GQ
Sbjct: 655 EKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQT 714
Query: 632 RHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQ 677
+ V+V+RL++A ++++ + R K++L + + K +F+G Q
Sbjct: 715 KPVVVYRLVTANTIDQKIVERAAAKRKLEKLII----HKNHFKGGQ 756
Score = 265 (98.3 bits), Expect = 6.6e-50, Sum P(2) = 6.6e-50
Identities = 90/308 (29%), Positives = 149/308 (48%)
Query: 113 FEPLVLSKDGEYPIIQVPASINCRLLE-HQREGVKFLYKLYKNKHGGILGDDMGLGKTIQ 171
F+P V +G+ Q P ++ +Q EG+++L L++N GIL D+MGLGKT+Q
Sbjct: 199 FDP-VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 257
Query: 172 TIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYH 230
IA +A + + G L+ P S + NW EF R++ +YH
Sbjct: 258 CIATIALMIQRGVP--------------GPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYH 303
Query: 231 GPN--RDMILEKL-EACGV----EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283
G R ++ + + G V+ITSF+ + L W+ +IVDE HR+KN K
Sbjct: 304 GTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMK 363
Query: 284 SKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQ 343
+L N++ LTGT +QN + EL++L +++ P + F ++D
Sbjct: 364 CRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDIT----- 418
Query: 344 RLTAPERFIRIADERKQ---HLV-AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQ 399
L+ I IA ER+Q H++ +L +LLRR K + + + K + VV+ +S Q
Sbjct: 419 SLSETAEDI-IAKEREQNVLHMLHQILTPFLLRRLKSD-VALEVPPKREVVVYAPLSKKQ 476
Query: 400 KRAYRRLL 407
+ Y ++
Sbjct: 477 EIFYTAIV 484
Score = 37 (18.1 bits), Expect = 5.5e-26, Sum P(2) = 5.5e-26
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 41 RRPPKSSLAQQLQRLGETYNFSLPQQNPETRREKAPVE 78
RR KS ++ + Q PE RE+A VE
Sbjct: 510 RRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVE 547
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 325 (119.5 bits), Expect = 7.0e-50, Sum P(3) = 7.0e-50
Identities = 65/158 (41%), Positives = 101/158 (63%)
Query: 500 NAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSF 559
NA + F + +++ GK+ ++KL+ + G ++L+FS VR LDILE +LI++ Y +
Sbjct: 1224 NADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPY 1283
Query: 560 SRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618
R+DG NLRQ+ +D F+ S + VFL+ TRAGGLG+NL +A+ +IFD +WNP D
Sbjct: 1284 ERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQND 1343
Query: 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYK 656
LQAQ R R GQ + V ++RL++ S E ++ + K
Sbjct: 1344 LQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLK 1381
Score = 308 (113.5 bits), Expect = 7.0e-50, Sum P(3) = 7.0e-50
Identities = 95/290 (32%), Positives = 145/290 (50%)
Query: 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKD 193
N +L E+Q EGV +L + N IL D+MGLGKTIQ+I FL ++ LK
Sbjct: 915 NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIY----------LKG 964
Query: 194 NKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPN---RDMILEKL---EACG-- 245
G L+I P S I NWE EF W+ NV +YHG R + L ++ + G
Sbjct: 965 IH----GPFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 1020
Query: 246 ------VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRI 299
+IT+F+ L + W V++DEAHRLKN KL + +++
Sbjct: 1021 IKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKV 1080
Query: 300 GLTGTIMQNKIMELYNLFDWVAPGSLGTREHF-REFYDEPLKHGQRLTAPERFIRIADER 358
LTGT +QN + EL++L ++ P + F +EF D LK +E+
Sbjct: 1081 LLTGTPLQNTVEELFSLLHFLEPTRFPSETTFMQEFGD--LK--------------TEEQ 1124
Query: 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQ 408
Q L A+L+ +LRR KE+ +L KE+ ++ ++++QK+ YR +L+
Sbjct: 1125 VQKLQAILKPMMLRRLKEDVEKNLAP-KEETIIEVELTNIQKKYYRAILE 1173
Score = 41 (19.5 bits), Expect = 7.0e-50, Sum P(3) = 7.0e-50
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 735 SSKDSNTLLSTGSKTRKSSDPEMARTSK 762
S +D L K+ +SS PE S+
Sbjct: 2180 SEEDEEEKLEDDDKSEESSQPEAGAVSR 2207
Score = 41 (19.5 bits), Expect = 7.0e-50, Sum P(3) = 7.0e-50
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 746 GSKTRKSSDPEMARTSKPLLEDMGIVYAHRNDDIVNKQPGFQRKKEESIPQDLSSRPPPI 805
G R+ DPE T P +++ D+ N P KEE P ++ R P
Sbjct: 1796 GEFDREDEDPEYKPTRTPFKDEI--------DEFANSPP---EDKEE--PMEI--RAPGK 1840
Query: 806 HSK 808
HS+
Sbjct: 1841 HSE 1843
Score = 37 (18.1 bits), Expect = 1.8e-49, Sum P(3) = 1.8e-49
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 790 KEESIPQDLSSRPPPIHSKR 809
K + P DLSS PI +R
Sbjct: 1981 KPDDEPPDLSSAIEPITEER 2000
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 307 (113.1 bits), Expect = 8.3e-50, Sum P(2) = 8.3e-50
Identities = 66/153 (43%), Positives = 94/153 (61%)
Query: 507 IGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGST 566
+ + + GK R LE+L+ KGD+++LFS +LDILE FL + + RLDG T
Sbjct: 782 LDMDQILDSGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHRYIRLDGKT 841
Query: 567 PSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSF 626
+ R L+D+FN+ VFL+ST+AGGLG+NL SAN V++ D + NP D QA+DR
Sbjct: 842 QISDRIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCH 901
Query: 627 RFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQL 659
R GQ R V V +L+S G++EE + K +L
Sbjct: 902 RVGQTREVKVIKLISKGTIEESMLKMNQQKLKL 934
Score = 301 (111.0 bits), Expect = 8.3e-50, Sum P(2) = 8.3e-50
Identities = 91/294 (30%), Positives = 147/294 (50%)
Query: 127 IQVPASIN--CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDE 184
I+ P+ +N L +Q+ G+ +L L+K+ GIL D+MGLGKTIQ IAFLA ++ +
Sbjct: 421 IEQPSVLNQSLELKPYQKIGLNWLALLHKHGLNGILADEMGLGKTIQAIAFLAHIY---Q 477
Query: 185 SSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYH-GPNRDMILEKLE 242
D +G LI+ P+S + NW E + W NV Y+ G D + +
Sbjct: 478 EGD-----------RGPHLIVVPASTLDNWIREVNLWCPELNVLFYYVGSQEDRKHLRAD 526
Query: 243 ACG----VEVLITSFD---SYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKT 295
V++T+++ S S+ +V I DE H LKN S Y + +
Sbjct: 527 ISNRVVDFNVIVTTYNCAISSSDDRSLFRKVKLNYAIFDEGHMLKNMSSVRYQQLMRINA 586
Query: 296 RNRIGLTGTIMQNKIMELYNLFDWVAPG--SLGTREHFREFYDEPLKHGQRLTAPERFIR 353
++R+ LTGT +QN ++EL +L ++V P S T E R + K + + E+
Sbjct: 587 KHRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE-IRRMFSSKAKTAEEQSTYEK--- 642
Query: 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
ER H +++ ++LRR K+E + L K+D++ C MS+ Q++ Y LL
Sbjct: 643 ---ERIAHAKQIIKPFILRRVKDEVLKQLPP-KKDHIELCAMSEKQEQLYCDLL 692
Score = 39 (18.8 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 34/157 (21%), Positives = 64/157 (40%)
Query: 157 GGILGDDMGLGKTIQTIAFLAAV--FGKDES-SDSTILKDNKVDKKGYVLIICPSSVIQN 213
G L +D G G + + + + F +D S S+ T++ K ++ + P +
Sbjct: 302 GSSLDEDYGSGDEVVESVYKSKILSFLQDASPSELTMIPQCSEKKVQKIIALRP---FNS 358
Query: 214 WEIEFSRWS-TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVI 272
WE S+ + T +S N +L++ + V L+ + I + +V +
Sbjct: 359 WEALLSKITKTAGLSEDIVWNCKTLLKERDV--VLKLMNKCEE--ISNKLTKQVTK--IT 412
Query: 273 VDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNK 309
D R E+ + LELK +IGL + +K
Sbjct: 413 EDGGCRWNIEQPSVLNQSLELKPYQKIGLNWLALLHK 449
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 360 (131.8 bits), Expect = 8.4e-50, Sum P(3) = 8.4e-50
Identities = 72/154 (46%), Positives = 105/154 (68%)
Query: 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLR 571
++S GK+ L+KL+ +G+++L+FS VRMLDIL ++L + + F RLDGS LR
Sbjct: 780 IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELR 839
Query: 572 QSLVDDFNSSPSKQV-FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630
+ +D FN+ S+ FL+STRAGGLG+NL SA+ VVIFD +WNP DLQAQ R+ R GQ
Sbjct: 840 KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ 899
Query: 631 KRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664
K+ V ++RL++ GS+EE + R K L ++ +
Sbjct: 900 KKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI 933
Score = 258 (95.9 bits), Expect = 8.4e-50, Sum P(3) = 8.4e-50
Identities = 66/215 (30%), Positives = 113/215 (52%)
Query: 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKV 196
L ++Q G+ +L + + IL D+MGLGKTIQTI+FL +F + +
Sbjct: 477 LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLY---------- 526
Query: 197 DKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILE------KLEACGVE 247
G L++ P S + +W+ E W+ N +Y G +R+MI + +
Sbjct: 527 ---GPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFN 583
Query: 248 VLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQ 307
+L+T+++ S L +NW + VDEAHRLKN+ S LY ++ K+ +R+ +TGT +Q
Sbjct: 584 ILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 643
Query: 308 NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG 342
N + EL++L ++ P + E F E + + ++G
Sbjct: 644 NSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG 678
Score = 67 (28.6 bits), Expect = 6.2e-30, Sum P(3) = 6.2e-30
Identities = 48/221 (21%), Positives = 95/221 (42%)
Query: 200 GYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGP--NRDMILEKLEACGVEVLITSFDSY 256
G L++ P S + +W+ E W+ N +Y G +R+MI E + +
Sbjct: 527 GPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTH------EWMHPQ--TK 578
Query: 257 RIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNL 316
R+ +IL +EI++ D K+ L A + + +R+ +++ +++ +
Sbjct: 579 RLKFNILL-TTYEILLKD-----KSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSN 632
Query: 317 FDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH----------LVAVL 366
+ G+ + +E + L H PE+F D ++H L L
Sbjct: 633 HRLLITGT-PLQNSLKELWS--LLH---FIMPEKFSSWEDFEEEHGKGREYGYASLHKEL 686
Query: 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLL 407
+LLRR K++ + + K + ++ MS LQK+ Y+ +L
Sbjct: 687 EPFLLRRVKKD-VEKSLPAKVEQILRMEMSALQKQYYKWIL 726
Score = 45 (20.9 bits), Expect = 8.4e-50, Sum P(3) = 8.4e-50
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDA 483
L +++L++ NH LIKP P D +++A
Sbjct: 745 LNIMMELKKCCNHCYLIKP-PDDNEFYNKQEA 775
WARNING: HSPs involving 321 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 875 830 0.00080 122 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 571
No. of states in DFA: 623 (66 KB)
Total size of DFA: 415 KB (2201 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 71.71u 0.09s 71.80t Elapsed: 00:00:03
Total cpu time: 71.79u 0.09s 71.88t Elapsed: 00:00:03
Start: Sat May 11 05:39:25 2013 End: Sat May 11 05:39:28 2013
WARNINGS ISSUED: 2