Query 044036
Match_columns 875
No_of_seqs 415 out of 2451
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0387 Transcription-coupled 100.0 2E-116 5E-121 982.9 48.5 658 126-870 195-879 (923)
2 KOG0385 Chromatin remodeling c 100.0 1E-102 3E-107 867.4 40.7 510 129-720 159-675 (971)
3 KOG0384 Chromodomain-helicase 100.0 7.6E-93 1.6E-97 823.1 33.8 498 129-702 362-875 (1373)
4 KOG0391 SNF2 family DNA-depend 100.0 1.7E-90 3.6E-95 787.9 35.6 512 127-689 606-1429(1958)
5 KOG0389 SNF2 family DNA-depend 100.0 1.1E-89 2.3E-94 767.1 38.5 495 128-667 389-912 (941)
6 KOG0392 SNF2 family DNA-depend 100.0 9.7E-89 2.1E-93 784.0 39.7 500 123-668 962-1479(1549)
7 KOG0388 SNF2 family DNA-depend 100.0 1.2E-88 2.6E-93 744.5 35.6 486 126-667 557-1178(1185)
8 PLN03142 Probable chromatin-re 100.0 8.3E-87 1.8E-91 803.8 46.2 505 127-717 160-671 (1033)
9 KOG1015 Transcription regulato 100.0 1.2E-82 2.6E-87 713.6 34.2 522 115-674 645-1308(1567)
10 KOG0390 DNA repair protein, SN 100.0 1.1E-80 2.3E-85 717.8 42.4 499 113-667 214-731 (776)
11 KOG0386 Chromatin remodeling c 100.0 1.5E-80 3.2E-85 708.5 26.6 471 127-666 384-861 (1157)
12 KOG1002 Nucleotide excision re 100.0 2.3E-74 5.1E-79 612.4 29.3 498 125-669 173-775 (791)
13 KOG4439 RNA polymerase II tran 100.0 3.1E-72 6.8E-77 619.0 33.9 520 123-670 312-885 (901)
14 KOG1016 Predicted DNA helicase 100.0 9.4E-70 2E-74 599.1 23.4 508 120-670 238-876 (1387)
15 COG0553 HepA Superfamily II DN 100.0 1E-63 2.2E-68 625.0 37.6 484 131-666 333-845 (866)
16 KOG1000 Chromatin remodeling p 100.0 3.1E-57 6.6E-62 483.2 29.5 428 129-667 191-627 (689)
17 PRK04914 ATP-dependent helicas 100.0 1.4E-56 3.1E-61 540.3 29.8 434 132-666 148-628 (956)
18 KOG1001 Helicase-like transcri 100.0 2.7E-53 5.8E-58 494.9 22.2 480 139-665 135-672 (674)
19 KOG0383 Predicted helicase [Ge 100.0 2.8E-47 6.1E-52 437.3 9.0 386 128-597 284-696 (696)
20 TIGR00603 rad25 DNA repair hel 100.0 6.3E-41 1.4E-45 392.0 34.1 353 134-665 253-627 (732)
21 PF00176 SNF2_N: SNF2 family N 100.0 1.3E-40 2.7E-45 364.3 20.1 282 140-468 1-299 (299)
22 PRK13766 Hef nuclease; Provisi 100.0 2.4E-35 5.1E-40 362.9 36.5 458 136-660 15-496 (773)
23 KOG0298 DEAD box-containing he 100.0 5.3E-35 1.1E-39 343.0 16.5 287 155-470 374-693 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 4.8E-32 1E-36 294.6 33.7 457 134-665 13-503 (542)
25 KOG1123 RNA polymerase II tran 100.0 6.2E-33 1.3E-37 297.2 17.9 382 91-648 258-658 (776)
26 COG1061 SSL2 DNA or RNA helica 100.0 2.2E-29 4.8E-34 288.0 29.0 365 132-655 32-406 (442)
27 PHA02558 uvsW UvsW helicase; P 100.0 9.3E-29 2E-33 288.3 31.5 335 135-643 113-455 (501)
28 KOG0354 DEAD-box like helicase 100.0 3.9E-26 8.4E-31 262.6 31.0 466 134-668 60-553 (746)
29 PTZ00110 helicase; Provisional 99.9 5.5E-26 1.2E-30 266.9 31.5 322 136-643 152-484 (545)
30 PRK11776 ATP-dependent RNA hel 99.9 1.9E-25 4.1E-30 259.1 30.1 314 136-643 26-349 (460)
31 PRK04837 ATP-dependent RNA hel 99.9 1.9E-25 4E-30 256.4 29.6 321 136-642 30-361 (423)
32 PRK04537 ATP-dependent RNA hel 99.9 3E-25 6.4E-30 261.6 29.8 321 136-642 31-363 (572)
33 PRK11192 ATP-dependent RNA hel 99.9 5.6E-25 1.2E-29 253.5 31.0 316 136-636 23-347 (434)
34 PRK10590 ATP-dependent RNA hel 99.9 7.6E-25 1.6E-29 253.3 30.5 320 136-642 23-351 (456)
35 PRK01297 ATP-dependent RNA hel 99.9 8.6E-25 1.9E-29 254.4 30.2 321 136-643 109-442 (475)
36 TIGR00614 recQ_fam ATP-depende 99.9 7.9E-25 1.7E-29 253.9 29.6 304 135-637 10-329 (470)
37 PLN00206 DEAD-box ATP-dependen 99.9 8.9E-25 1.9E-29 255.9 29.6 322 136-643 143-475 (518)
38 KOG0331 ATP-dependent RNA heli 99.9 5.2E-25 1.1E-29 246.5 24.5 313 139-634 116-441 (519)
39 PRK11634 ATP-dependent RNA hel 99.9 3.2E-24 6.8E-29 254.4 30.1 310 136-636 28-347 (629)
40 PTZ00424 helicase 45; Provisio 99.9 6.1E-24 1.3E-28 242.7 30.0 318 136-646 50-377 (401)
41 KOG0330 ATP-dependent RNA heli 99.9 1.9E-24 4.2E-29 227.1 22.7 319 127-646 81-410 (476)
42 TIGR01389 recQ ATP-dependent D 99.9 2.4E-23 5.1E-28 248.5 31.5 299 136-635 13-325 (591)
43 PRK11057 ATP-dependent DNA hel 99.9 3.1E-23 6.8E-28 246.9 29.8 298 136-634 25-336 (607)
44 TIGR00643 recG ATP-dependent D 99.9 3.6E-22 7.7E-27 238.9 33.5 305 132-635 231-560 (630)
45 PLN03137 ATP-dependent DNA hel 99.9 2.1E-22 4.6E-27 241.8 28.8 104 532-637 680-783 (1195)
46 PRK10917 ATP-dependent DNA hel 99.9 4.5E-22 9.7E-27 239.6 30.1 307 133-641 258-587 (681)
47 TIGR03817 DECH_helic helicase/ 99.9 6.6E-22 1.4E-26 239.1 28.5 329 136-650 36-393 (742)
48 PRK13767 ATP-dependent helicas 99.9 1.6E-21 3.4E-26 240.3 32.1 114 523-638 275-395 (876)
49 TIGR00580 mfd transcription-re 99.9 1.8E-21 3.8E-26 237.5 29.9 306 134-643 449-770 (926)
50 PRK11448 hsdR type I restricti 99.9 1.2E-21 2.6E-26 243.0 26.0 106 532-640 698-815 (1123)
51 COG0513 SrmB Superfamily II DN 99.9 6.2E-21 1.3E-25 222.3 30.0 317 136-642 51-379 (513)
52 PRK10689 transcription-repair 99.9 6.4E-21 1.4E-25 237.4 30.9 305 134-642 598-918 (1147)
53 KOG0328 Predicted ATP-dependen 99.9 2E-21 4.4E-26 196.2 18.3 321 127-648 47-378 (400)
54 KOG0333 U5 snRNP-like RNA heli 99.9 1.4E-20 3.1E-25 204.4 20.0 369 136-667 267-644 (673)
55 TIGR01587 cas3_core CRISPR-ass 99.8 2.6E-19 5.7E-24 201.3 27.8 121 517-643 208-338 (358)
56 PRK02362 ski2-like helicase; P 99.8 1.2E-19 2.6E-24 221.6 27.0 316 136-642 23-396 (737)
57 KOG0335 ATP-dependent RNA heli 99.8 9.4E-20 2E-24 201.1 21.8 320 135-637 95-440 (482)
58 PRK01172 ski2-like helicase; P 99.8 5.2E-19 1.1E-23 214.4 27.0 310 135-640 21-375 (674)
59 KOG0345 ATP-dependent RNA heli 99.8 1.1E-18 2.3E-23 188.0 25.5 311 136-637 28-360 (567)
60 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1.2E-18 2.5E-23 207.3 28.1 105 530-639 270-390 (844)
61 PRK00254 ski2-like helicase; P 99.8 1.7E-18 3.6E-23 211.1 29.9 153 135-313 22-185 (720)
62 KOG0340 ATP-dependent RNA heli 99.8 1.4E-18 3E-23 181.3 24.5 317 137-645 30-363 (442)
63 KOG0338 ATP-dependent RNA heli 99.8 1.1E-18 2.3E-23 189.2 24.1 316 138-643 205-533 (691)
64 KOG0350 DEAD-box ATP-dependent 99.8 5.3E-19 1.1E-23 191.5 21.1 120 517-642 416-539 (620)
65 KOG0342 ATP-dependent RNA heli 99.8 5.5E-19 1.2E-23 191.6 20.8 314 136-633 104-429 (543)
66 KOG0343 RNA Helicase [RNA proc 99.8 1.2E-18 2.5E-23 190.4 22.2 326 136-656 91-434 (758)
67 COG1200 RecG RecG-like helicas 99.8 1.3E-17 2.8E-22 190.0 27.3 305 131-634 257-584 (677)
68 COG1201 Lhr Lhr-like helicases 99.8 8.2E-18 1.8E-22 199.0 26.6 337 134-657 20-374 (814)
69 TIGR03714 secA2 accessory Sec 99.8 2E-17 4.4E-22 194.9 29.1 115 515-634 407-530 (762)
70 KOG0348 ATP-dependent RNA heli 99.8 5.8E-18 1.3E-22 184.5 22.4 125 518-646 409-557 (708)
71 TIGR00348 hsdR type I site-spe 99.8 8.3E-18 1.8E-22 201.8 26.2 157 134-308 236-405 (667)
72 PRK12898 secA preprotein trans 99.8 3E-16 6.5E-21 183.0 35.0 129 515-652 456-592 (656)
73 TIGR00963 secA preprotein tran 99.8 1.5E-17 3.2E-22 194.8 24.1 115 516-634 389-510 (745)
74 PRK09751 putative ATP-dependen 99.8 1.8E-17 4E-22 207.7 26.2 96 531-628 243-371 (1490)
75 PRK09200 preprotein translocas 99.8 6.9E-17 1.5E-21 192.2 29.2 128 515-651 411-546 (790)
76 KOG0336 ATP-dependent RNA heli 99.8 1.2E-17 2.5E-22 176.5 19.9 318 154-653 256-585 (629)
77 COG0514 RecQ Superfamily II DN 99.8 3.5E-17 7.6E-22 187.2 25.1 308 136-646 17-340 (590)
78 KOG0339 ATP-dependent RNA heli 99.8 1.4E-17 3.1E-22 180.2 19.5 126 516-646 453-578 (731)
79 PRK09401 reverse gyrase; Revie 99.8 2.9E-17 6.2E-22 205.5 25.3 103 516-628 315-431 (1176)
80 PHA02653 RNA helicase NPH-II; 99.8 1.3E-16 2.9E-21 188.9 29.5 108 531-645 394-516 (675)
81 KOG0347 RNA helicase [RNA proc 99.8 3.2E-18 6.8E-23 187.1 11.5 108 532-643 463-570 (731)
82 KOG0341 DEAD-box protein abstr 99.7 2.9E-17 6.4E-22 172.4 17.4 129 516-651 408-536 (610)
83 KOG4284 DEAD box protein [Tran 99.7 3.7E-17 8E-22 181.2 17.8 309 141-633 52-371 (980)
84 KOG0326 ATP-dependent RNA heli 99.7 7E-18 1.5E-22 173.4 9.7 120 516-641 308-427 (459)
85 COG1205 Distinct helicase fami 99.7 2.4E-16 5.2E-21 191.6 24.5 332 131-650 66-429 (851)
86 TIGR03158 cas3_cyano CRISPR-as 99.7 3.2E-16 7E-21 175.3 23.5 85 531-626 271-357 (357)
87 PRK05580 primosome assembly pr 99.7 1.6E-15 3.5E-20 182.3 31.0 150 135-306 143-305 (679)
88 COG4096 HsdR Type I site-speci 99.7 9.8E-17 2.1E-21 184.8 17.0 360 125-640 154-545 (875)
89 KOG0332 ATP-dependent RNA heli 99.7 7.9E-16 1.7E-20 161.7 21.5 128 517-650 317-450 (477)
90 cd00079 HELICc Helicase superf 99.7 9.3E-17 2E-21 152.8 12.7 120 516-637 12-131 (131)
91 TIGR01970 DEAH_box_HrpB ATP-de 99.7 3.8E-15 8.3E-20 180.6 27.2 108 532-644 209-337 (819)
92 COG1204 Superfamily II helicas 99.7 1E-15 2.3E-20 183.6 21.2 155 136-313 31-196 (766)
93 KOG0334 RNA helicase [RNA proc 99.7 3E-15 6.5E-20 176.4 22.9 122 516-642 598-719 (997)
94 TIGR01054 rgy reverse gyrase. 99.7 2.8E-15 6.2E-20 187.9 23.9 127 135-282 77-214 (1171)
95 TIGR00595 priA primosomal prot 99.7 1.1E-14 2.4E-19 169.2 26.4 126 160-306 2-140 (505)
96 PRK11664 ATP-dependent RNA hel 99.7 1.1E-14 2.4E-19 176.9 26.5 110 531-645 211-341 (812)
97 KOG0344 ATP-dependent RNA heli 99.7 2.2E-15 4.7E-20 167.7 18.3 121 516-642 373-494 (593)
98 PF04851 ResIII: Type III rest 99.7 5.2E-16 1.1E-20 156.7 11.9 151 135-306 2-183 (184)
99 KOG0346 RNA helicase [RNA proc 99.6 2.3E-15 4.9E-20 161.2 15.4 121 517-642 254-409 (569)
100 PRK14701 reverse gyrase; Provi 99.6 1.7E-14 3.7E-19 184.4 24.8 104 519-632 320-447 (1638)
101 PRK13104 secA preprotein trans 99.6 7.8E-14 1.7E-18 165.9 27.1 118 515-636 427-582 (896)
102 PRK12906 secA preprotein trans 99.6 2E-13 4.3E-18 161.8 30.0 115 516-634 424-546 (796)
103 COG1202 Superfamily II helicas 99.6 1.3E-14 2.8E-19 159.8 17.4 310 135-643 215-553 (830)
104 COG1197 Mfd Transcription-repa 99.6 2.8E-13 6E-18 163.0 29.5 307 133-642 591-912 (1139)
105 KOG0327 Translation initiation 99.6 9.9E-15 2.1E-19 155.1 14.2 121 517-645 252-372 (397)
106 PF00271 Helicase_C: Helicase 99.6 2.4E-15 5.1E-20 130.1 7.6 78 550-629 1-78 (78)
107 COG4889 Predicted helicase [Ge 99.6 1E-14 2.2E-19 166.2 13.5 161 127-305 152-350 (1518)
108 PRK12904 preprotein translocas 99.6 7.7E-13 1.7E-17 157.5 28.3 117 516-636 414-568 (830)
109 smart00487 DEXDc DEAD-like hel 99.6 2.8E-14 6.1E-19 145.0 13.7 156 135-308 7-173 (201)
110 PRK13107 preprotein translocas 99.6 2.2E-12 4.7E-17 153.2 30.5 117 515-635 432-585 (908)
111 PRK09694 helicase Cas3; Provis 99.6 4.8E-13 1.1E-17 162.4 25.6 104 525-631 553-665 (878)
112 TIGR00631 uvrb excinuclease AB 99.5 5.6E-12 1.2E-16 150.2 32.5 133 514-651 424-563 (655)
113 cd00046 DEXDc DEAD-like helica 99.5 7.3E-14 1.6E-18 133.5 12.0 136 156-305 1-144 (144)
114 PRK11131 ATP-dependent RNA hel 99.5 1.1E-12 2.3E-17 162.7 25.0 108 531-645 285-413 (1294)
115 KOG0337 ATP-dependent RNA heli 99.5 2.3E-13 5E-18 145.4 15.8 315 138-645 45-370 (529)
116 COG4098 comFA Superfamily II D 99.5 1.2E-11 2.7E-16 129.4 27.0 307 134-640 95-413 (441)
117 TIGR01967 DEAH_box_HrpA ATP-de 99.5 2.4E-12 5.1E-17 160.2 22.6 109 531-646 278-407 (1283)
118 PRK12900 secA preprotein trans 99.5 2.8E-11 6E-16 144.5 29.5 116 515-634 581-704 (1025)
119 smart00490 HELICc helicase sup 99.4 2.2E-13 4.8E-18 118.1 8.4 81 547-629 2-82 (82)
120 KOG0351 ATP-dependent DNA heli 99.4 1.7E-12 3.6E-17 157.4 18.7 306 135-638 263-589 (941)
121 KOG0952 DNA/RNA helicase MER3/ 99.4 9.1E-12 2E-16 146.2 23.9 160 151-325 122-300 (1230)
122 PRK05298 excinuclease ABC subu 99.4 8.2E-11 1.8E-15 141.3 32.8 126 514-644 428-558 (652)
123 PRK12326 preprotein translocas 99.4 3.5E-10 7.6E-15 131.7 30.2 117 516-636 411-542 (764)
124 PRK12899 secA preprotein trans 99.3 9.2E-10 2E-14 131.4 32.1 117 515-635 551-675 (970)
125 cd00268 DEADc DEAD-box helicas 99.3 1.4E-11 3.1E-16 126.9 14.2 156 136-306 21-185 (203)
126 COG1203 CRISPR-associated heli 99.3 8.8E-11 1.9E-15 142.9 22.6 128 529-659 437-568 (733)
127 PF00270 DEAD: DEAD/DEAH box h 99.3 1.3E-11 2.7E-16 123.1 11.9 155 139-312 2-168 (169)
128 COG0556 UvrB Helicase subunit 99.2 1.1E-08 2.3E-13 113.4 30.7 137 517-656 431-572 (663)
129 PF14773 VIGSSK: Helicase-asso 99.2 4E-12 8.7E-17 99.2 1.3 32 760-791 27-61 (61)
130 KOG0951 RNA helicase BRR2, DEA 99.2 1E-09 2.2E-14 130.7 20.9 162 154-325 324-502 (1674)
131 PRK13103 secA preprotein trans 99.2 4.7E-09 1E-13 125.4 25.0 118 515-636 432-586 (913)
132 KOG0352 ATP-dependent DNA heli 99.2 3E-09 6.5E-14 114.2 20.6 102 535-638 258-359 (641)
133 PRK12903 secA preprotein trans 99.1 4.9E-08 1.1E-12 115.6 28.3 117 515-636 409-534 (925)
134 TIGR01407 dinG_rel DnaQ family 99.1 1.8E-08 3.8E-13 125.4 26.3 78 531-613 673-756 (850)
135 KOG0329 ATP-dependent RNA heli 99.0 6.5E-09 1.4E-13 104.8 15.4 121 141-279 69-197 (387)
136 PF11496 HDA2-3: Class II hist 99.0 3.5E-09 7.6E-14 114.3 14.3 228 387-654 4-256 (297)
137 KOG0353 ATP-dependent DNA heli 99.0 1.7E-08 3.7E-13 106.7 18.8 107 531-639 316-465 (695)
138 PF13872 AAA_34: P-loop contai 99.0 2.3E-09 5E-14 113.5 11.8 234 128-405 27-302 (303)
139 KOG0947 Cytoplasmic exosomal R 99.0 3E-08 6.4E-13 116.0 20.9 141 135-305 296-444 (1248)
140 KOG0349 Putative DEAD-box RNA 99.0 5.6E-09 1.2E-13 112.1 12.7 96 531-628 504-602 (725)
141 COG1110 Reverse gyrase [DNA re 98.9 7.5E-08 1.6E-12 114.0 21.6 124 136-279 82-215 (1187)
142 CHL00122 secA preprotein trans 98.8 1.4E-06 3E-11 104.3 28.6 82 516-600 408-490 (870)
143 TIGR00596 rad1 DNA repair prot 98.8 9.4E-07 2E-11 107.3 25.8 91 247-337 9-106 (814)
144 PRK12901 secA preprotein trans 98.7 2.9E-06 6.3E-11 102.3 27.1 117 515-635 611-735 (1112)
145 COG1198 PriA Primosomal protei 98.7 1E-06 2.3E-11 104.8 21.7 152 134-306 196-360 (730)
146 COG4581 Superfamily II RNA hel 98.7 6.5E-07 1.4E-11 108.9 19.6 156 133-337 116-282 (1041)
147 PRK12902 secA preprotein trans 98.7 8.7E-06 1.9E-10 97.4 28.6 83 515-600 422-505 (939)
148 PRK07246 bifunctional ATP-depe 98.7 3.8E-06 8.3E-11 103.5 26.3 88 520-612 635-724 (820)
149 KOG1513 Nuclear helicase MOP-3 98.6 1.1E-06 2.5E-11 100.8 17.2 238 128-408 256-539 (1300)
150 KOG0948 Nuclear exosomal RNA h 98.6 1.4E-06 2.9E-11 100.1 16.8 142 134-305 127-276 (1041)
151 KOG0922 DEAH-box RNA helicase 98.6 5.8E-06 1.3E-10 94.9 21.7 109 534-645 260-392 (674)
152 PRK08074 bifunctional ATP-depe 98.5 1.4E-05 3.1E-10 100.3 26.1 96 519-616 738-839 (928)
153 PRK15483 type III restriction- 98.5 9.7E-07 2.1E-11 107.2 14.7 183 138-340 8-277 (986)
154 TIGR00604 rad3 DNA repair heli 98.5 2.8E-05 6.2E-10 95.2 27.1 96 519-615 508-618 (705)
155 COG0610 Type I site-specific r 98.5 1.3E-06 2.7E-11 109.0 14.3 142 154-311 272-419 (962)
156 COG1643 HrpA HrpA-like helicas 98.4 1.5E-05 3.3E-10 96.6 21.5 109 532-646 259-390 (845)
157 KOG0949 Predicted helicase, DE 98.4 3.6E-05 7.8E-10 91.1 23.6 156 140-318 515-682 (1330)
158 TIGR03117 cas_csf4 CRISPR-asso 98.4 0.00014 3.1E-09 86.2 28.4 68 141-222 2-70 (636)
159 PF02399 Herpes_ori_bp: Origin 98.4 1.5E-05 3.3E-10 94.4 19.8 111 517-637 268-384 (824)
160 PF07652 Flavi_DEAD: Flaviviru 98.3 6.7E-07 1.5E-11 84.7 5.6 127 155-306 4-137 (148)
161 COG1199 DinG Rad3-related DNA 98.3 2.8E-05 6E-10 94.9 21.1 101 531-635 478-611 (654)
162 KOG0950 DNA polymerase theta/e 98.2 1.5E-05 3.2E-10 94.7 14.7 152 138-308 214-390 (1008)
163 KOG0953 Mitochondrial RNA heli 98.1 1.4E-05 3.1E-10 89.4 10.1 100 530-632 356-465 (700)
164 COG0653 SecA Preprotein transl 98.1 0.00023 5E-09 85.2 20.4 112 515-630 412-534 (822)
165 KOG0920 ATP-dependent RNA heli 98.0 0.00079 1.7E-08 81.8 23.5 122 517-644 396-545 (924)
166 PF13871 Helicase_C_4: Helicas 98.0 1.4E-05 3E-10 84.9 7.6 93 573-668 52-153 (278)
167 KOG0924 mRNA splicing factor A 97.8 0.0007 1.5E-08 77.7 17.8 106 556-664 597-721 (1042)
168 smart00488 DEXDc2 DEAD-like he 97.8 0.00017 3.6E-09 78.6 11.4 43 137-179 9-51 (289)
169 smart00489 DEXDc3 DEAD-like he 97.8 0.00017 3.6E-09 78.6 11.4 43 137-179 9-51 (289)
170 PF13086 AAA_11: AAA domain; P 97.7 0.00069 1.5E-08 70.8 14.0 73 136-220 1-75 (236)
171 KOG0926 DEAH-box RNA helicase 97.6 0.0008 1.7E-08 78.5 13.9 63 577-642 622-703 (1172)
172 PF07517 SecA_DEAD: SecA DEAD- 97.6 0.0007 1.5E-08 72.1 12.5 123 133-279 74-209 (266)
173 TIGR02562 cas3_yersinia CRISPR 97.5 0.031 6.7E-07 68.9 26.9 46 584-632 838-883 (1110)
174 KOG0925 mRNA splicing factor A 97.4 0.0019 4.2E-08 71.6 13.9 60 585-646 314-390 (699)
175 PF02562 PhoH: PhoH-like prote 97.2 0.00059 1.3E-08 69.8 6.5 146 137-311 5-161 (205)
176 KOG0923 mRNA splicing factor A 97.2 0.013 2.8E-07 67.7 16.9 79 557-643 507-606 (902)
177 KOG1803 DNA helicase [Replicat 97.2 0.0021 4.5E-08 73.7 10.6 70 131-219 180-250 (649)
178 PRK10536 hypothetical protein; 97.0 0.0021 4.6E-08 67.6 8.3 145 137-309 60-216 (262)
179 KOG1802 RNA helicase nonsense 97.0 0.0048 1E-07 71.0 11.4 129 136-286 410-587 (935)
180 PRK14873 primosome assembly pr 96.9 0.0047 1E-07 74.4 10.8 122 164-306 169-304 (665)
181 COG3587 Restriction endonuclea 96.8 0.0055 1.2E-07 72.7 9.7 133 156-305 75-242 (985)
182 PF13604 AAA_30: AAA domain; P 96.7 0.011 2.4E-07 60.6 10.9 125 136-307 1-132 (196)
183 PF13307 Helicase_C_2: Helicas 96.6 0.0058 1.3E-07 60.9 7.2 77 531-613 8-92 (167)
184 KOG4150 Predicted ATP-dependen 96.5 0.012 2.7E-07 66.4 9.9 117 512-630 505-629 (1034)
185 TIGR00376 DNA helicase, putati 96.4 0.039 8.5E-07 66.7 14.6 68 134-220 155-223 (637)
186 PRK11747 dinG ATP-dependent DN 96.3 0.024 5.1E-07 69.4 11.7 90 518-613 520-616 (697)
187 PF13401 AAA_22: AAA domain; P 96.3 0.0056 1.2E-07 57.9 5.0 119 155-305 4-125 (131)
188 TIGR01447 recD exodeoxyribonuc 96.2 0.028 6E-07 67.1 11.5 140 139-307 148-297 (586)
189 PRK10875 recD exonuclease V su 96.2 0.014 3.1E-07 69.7 9.0 144 137-307 153-303 (615)
190 PF09848 DUF2075: Uncharacteri 96.0 0.017 3.6E-07 65.0 7.7 90 159-281 5-97 (352)
191 TIGR01448 recD_rel helicase, p 95.9 0.018 3.9E-07 70.5 8.3 135 133-307 320-454 (720)
192 KOG1132 Helicase of the DEAD s 95.8 0.051 1.1E-06 65.1 10.8 48 129-176 14-61 (945)
193 KOG1131 RNA polymerase II tran 95.7 0.064 1.4E-06 60.5 10.4 47 136-182 16-62 (755)
194 PRK04296 thymidine kinase; Pro 95.6 0.029 6.4E-07 57.1 7.0 22 159-180 6-27 (190)
195 cd00009 AAA The AAA+ (ATPases 95.4 0.091 2E-06 49.8 9.4 25 155-179 19-43 (151)
196 COG0553 HepA Superfamily II DN 95.2 0.008 1.7E-07 75.9 1.5 176 136-327 84-289 (866)
197 PRK11747 dinG ATP-dependent DN 94.9 0.19 4.1E-06 61.7 12.4 43 136-178 25-72 (697)
198 COG1875 NYN ribonuclease and A 94.7 0.13 2.9E-06 56.1 9.0 140 139-307 231-389 (436)
199 KOG0951 RNA helicase BRR2, DEA 94.6 0.12 2.6E-06 64.1 9.1 108 153-283 1157-1269(1674)
200 TIGR03015 pepcterm_ATPase puta 94.3 0.56 1.2E-05 50.3 13.1 46 134-179 21-67 (269)
201 PF12340 DUF3638: Protein of u 93.9 0.16 3.5E-06 52.6 7.2 73 134-222 21-93 (229)
202 KOG1805 DNA replication helica 93.7 0.39 8.4E-06 58.4 10.8 144 135-307 668-831 (1100)
203 PLN03025 replication factor C 93.5 1.8 3.9E-05 47.9 15.4 41 141-181 18-60 (319)
204 PRK12723 flagellar biosynthesi 93.4 0.8 1.7E-05 51.9 12.3 56 267-322 254-314 (388)
205 PRK07003 DNA polymerase III su 93.3 0.48 1E-05 57.3 10.8 42 141-182 21-65 (830)
206 PRK14956 DNA polymerase III su 93.2 0.46 9.9E-06 54.9 10.2 41 141-181 23-66 (484)
207 smart00492 HELICc3 helicase su 93.2 0.57 1.2E-05 45.2 9.5 52 560-613 26-79 (141)
208 TIGR02881 spore_V_K stage V sp 92.9 0.22 4.8E-06 53.4 6.9 24 157-180 44-67 (261)
209 smart00382 AAA ATPases associa 92.9 0.22 4.9E-06 46.5 6.2 44 156-215 3-46 (148)
210 TIGR02880 cbbX_cfxQ probable R 92.6 0.47 1E-05 51.6 8.8 25 156-180 59-83 (284)
211 PRK14960 DNA polymerase III su 92.2 1.6 3.6E-05 52.2 13.2 42 141-182 20-64 (702)
212 smart00491 HELICc2 helicase su 92.2 0.63 1.4E-05 45.0 8.2 53 560-613 23-80 (142)
213 PHA02533 17 large terminase pr 92.1 1.5 3.2E-05 51.9 12.8 153 135-315 58-220 (534)
214 PRK07994 DNA polymerase III su 92.0 0.87 1.9E-05 54.8 10.8 42 141-182 21-65 (647)
215 TIGR02768 TraA_Ti Ti-type conj 91.8 0.68 1.5E-05 57.2 9.9 127 135-307 351-478 (744)
216 PF13177 DNA_pol3_delta2: DNA 91.7 2.2 4.8E-05 42.2 11.7 44 141-184 2-48 (162)
217 PRK06526 transposase; Provisio 91.7 0.43 9.4E-06 50.9 7.1 35 142-180 89-123 (254)
218 PRK09112 DNA polymerase III su 91.7 1.3 2.8E-05 49.7 11.1 42 141-182 28-72 (351)
219 COG3421 Uncharacterized protei 91.5 0.12 2.6E-06 59.4 2.7 104 162-280 4-125 (812)
220 CHL00181 cbbX CbbX; Provisiona 91.5 0.85 1.8E-05 49.7 9.2 45 158-214 62-106 (287)
221 PF06862 DUF1253: Protein of u 91.5 2.4 5.2E-05 48.6 13.0 125 517-642 282-414 (442)
222 PRK08769 DNA polymerase III su 91.2 1.4 3E-05 48.7 10.5 49 135-183 3-54 (319)
223 PRK05707 DNA polymerase III su 91.2 0.77 1.7E-05 50.9 8.7 47 137-183 4-50 (328)
224 PRK08181 transposase; Validate 90.7 1.5 3.3E-05 47.2 10.0 43 138-180 89-131 (269)
225 PRK14961 DNA polymerase III su 90.6 2.5 5.4E-05 47.7 12.2 41 141-181 21-64 (363)
226 PRK07764 DNA polymerase III su 90.4 2.4 5.3E-05 52.7 12.8 42 141-182 20-64 (824)
227 COG3267 ExeA Type II secretory 90.3 1.5 3.3E-05 46.0 9.2 134 132-305 28-173 (269)
228 PRK05703 flhF flagellar biosyn 90.0 2.8 6.1E-05 48.3 12.1 56 267-322 299-359 (424)
229 PRK12323 DNA polymerase III su 89.9 3.5 7.5E-05 49.4 12.7 42 141-182 21-65 (700)
230 PRK08116 hypothetical protein; 89.8 2.3 5E-05 45.8 10.6 26 155-180 114-139 (268)
231 PRK12402 replication factor C 89.7 1.4 3E-05 48.9 9.3 40 141-180 20-61 (337)
232 PRK14955 DNA polymerase III su 89.5 4.5 9.7E-05 46.3 13.2 42 141-182 21-65 (397)
233 COG1484 DnaC DNA replication p 89.4 2.9 6.2E-05 44.7 10.9 53 151-219 101-153 (254)
234 PRK14949 DNA polymerase III su 89.4 5.3 0.00011 49.6 14.2 42 141-182 21-65 (944)
235 TIGR03420 DnaA_homol_Hda DnaA 89.0 1.7 3.8E-05 45.1 8.8 26 155-180 38-63 (226)
236 PRK14958 DNA polymerase III su 88.9 6.9 0.00015 46.2 14.5 42 141-182 21-65 (509)
237 PRK08451 DNA polymerase III su 88.9 7.3 0.00016 46.0 14.6 42 141-182 19-63 (535)
238 TIGR00595 priA primosomal prot 88.9 3 6.4E-05 49.3 11.5 96 512-610 5-101 (505)
239 PRK08691 DNA polymerase III su 88.7 4.8 0.0001 48.7 13.0 42 141-182 21-65 (709)
240 PHA02544 44 clamp loader, smal 88.7 4.4 9.5E-05 44.6 12.1 40 267-306 100-141 (316)
241 PF13245 AAA_19: Part of AAA d 88.6 1.4 3E-05 37.6 6.3 45 157-213 12-56 (76)
242 cd01121 Sms Sms (bacterial rad 88.6 3.4 7.3E-05 46.7 11.2 86 157-280 84-171 (372)
243 PTZ00112 origin recognition co 88.5 5.6 0.00012 49.1 13.2 52 127-180 751-806 (1164)
244 PRK11889 flhF flagellar biosyn 88.3 3.8 8.3E-05 46.3 11.0 124 160-321 246-378 (436)
245 PRK07952 DNA replication prote 88.2 3.9 8.4E-05 43.4 10.7 41 140-180 80-124 (244)
246 PRK00440 rfc replication facto 88.0 16 0.00035 40.0 16.1 40 141-180 22-63 (319)
247 PRK13826 Dtr system oriT relax 87.6 2.6 5.6E-05 53.7 10.4 129 135-309 380-509 (1102)
248 PRK14974 cell division protein 87.6 5.2 0.00011 44.5 11.7 113 159-308 144-267 (336)
249 KOG0991 Replication factor C, 87.5 0.51 1.1E-05 48.5 3.3 26 156-181 49-74 (333)
250 PRK07471 DNA polymerase III su 87.5 4.2 9.1E-05 45.9 11.1 43 141-183 24-69 (365)
251 PRK13889 conjugal transfer rel 87.4 1.9 4.2E-05 54.4 9.1 128 136-309 346-474 (988)
252 PRK08727 hypothetical protein; 87.2 2.6 5.6E-05 44.4 8.7 24 157-180 43-66 (233)
253 PRK06645 DNA polymerase III su 87.2 3.9 8.4E-05 48.1 10.9 42 141-182 26-70 (507)
254 PRK04195 replication factor C 86.8 10 0.00022 44.6 14.3 25 155-179 39-63 (482)
255 cd01124 KaiC KaiC is a circadi 86.8 2.1 4.6E-05 42.9 7.6 47 159-221 3-49 (187)
256 PF00448 SRP54: SRP54-type pro 86.7 2.3 5E-05 43.5 7.7 129 159-322 5-142 (196)
257 COG0464 SpoVK ATPases of the A 86.6 2.2 4.8E-05 50.3 8.7 66 136-220 249-322 (494)
258 PRK05580 primosome assembly pr 86.4 5.6 0.00012 48.8 12.2 97 512-611 170-267 (679)
259 PHA03333 putative ATPase subun 86.3 7.6 0.00016 46.6 12.5 135 142-306 175-332 (752)
260 PRK14948 DNA polymerase III su 86.3 4.8 0.00011 48.6 11.4 42 141-182 21-65 (620)
261 PRK14969 DNA polymerase III su 86.3 18 0.00039 43.0 15.9 42 141-182 21-65 (527)
262 cd01120 RecA-like_NTPases RecA 86.0 4.2 9E-05 39.2 9.0 22 159-180 3-24 (165)
263 PRK07940 DNA polymerase III su 86.0 5.5 0.00012 45.4 11.1 43 141-183 10-64 (394)
264 PRK14964 DNA polymerase III su 86.0 9.8 0.00021 44.5 13.2 42 141-182 18-62 (491)
265 PRK14965 DNA polymerase III su 86.0 18 0.0004 43.4 16.0 42 141-182 21-65 (576)
266 KOG0989 Replication factor C, 85.8 4.5 9.8E-05 43.6 9.4 42 140-181 40-83 (346)
267 PRK14957 DNA polymerase III su 85.7 5.2 0.00011 47.5 10.9 42 141-182 21-65 (546)
268 TIGR02928 orc1/cdc6 family rep 85.5 3.4 7.5E-05 46.4 9.2 52 127-180 11-65 (365)
269 PF05876 Terminase_GpA: Phage 85.4 1.6 3.5E-05 52.1 6.7 167 128-316 8-190 (557)
270 PRK06871 DNA polymerase III su 85.3 4.8 0.0001 44.5 9.8 47 137-183 3-52 (325)
271 PRK05986 cob(I)alamin adenolsy 85.2 6.6 0.00014 39.8 9.9 56 261-319 109-168 (191)
272 PF05621 TniB: Bacterial TniB 85.0 10 0.00022 41.2 11.9 42 138-179 39-85 (302)
273 PRK08084 DNA replication initi 85.0 5.5 0.00012 42.0 9.9 25 156-180 46-70 (235)
274 PRK14962 DNA polymerase III su 84.7 3 6.6E-05 48.7 8.4 40 142-181 20-62 (472)
275 KOG0952 DNA/RNA helicase MER3/ 84.5 1.1 2.3E-05 55.2 4.6 110 155-282 943-1061(1230)
276 PRK14951 DNA polymerase III su 84.4 12 0.00025 45.3 13.1 42 141-182 21-65 (618)
277 PRK06835 DNA replication prote 84.3 8.2 0.00018 42.9 11.1 46 136-181 160-209 (329)
278 PRK14954 DNA polymerase III su 84.2 4.3 9.4E-05 48.9 9.5 42 141-182 21-65 (620)
279 PRK06647 DNA polymerase III su 84.0 4.8 0.0001 48.1 9.8 42 141-182 21-65 (563)
280 PF00004 AAA: ATPase family as 83.8 4.3 9.4E-05 37.7 7.7 21 159-179 2-22 (132)
281 PF06733 DEAD_2: DEAD_2; Inte 83.7 0.47 1E-05 47.5 1.0 37 245-281 119-159 (174)
282 PRK05563 DNA polymerase III su 83.7 33 0.00071 41.2 16.6 42 141-182 21-65 (559)
283 PRK06921 hypothetical protein; 83.2 12 0.00026 40.2 11.6 26 155-180 117-142 (266)
284 PRK07993 DNA polymerase III su 82.9 6.4 0.00014 43.8 9.7 47 137-183 3-52 (334)
285 PRK14087 dnaA chromosomal repl 82.6 7 0.00015 45.4 10.2 102 156-304 142-247 (450)
286 TIGR00362 DnaA chromosomal rep 82.6 6.3 0.00014 45.2 9.8 25 157-181 138-162 (405)
287 PRK12377 putative replication 82.6 9.7 0.00021 40.5 10.5 25 156-180 102-126 (248)
288 PRK00149 dnaA chromosomal repl 82.5 6 0.00013 46.1 9.8 25 157-181 150-174 (450)
289 KOG0740 AAA+-type ATPase [Post 82.5 1.8 3.9E-05 49.1 5.1 46 156-220 187-232 (428)
290 PRK14952 DNA polymerase III su 82.5 7.6 0.00017 46.5 10.6 42 141-182 18-62 (584)
291 PRK06893 DNA replication initi 82.3 9.5 0.00021 40.0 10.3 23 158-180 42-64 (229)
292 PRK11823 DNA repair protein Ra 82.3 11 0.00024 43.7 11.8 87 157-281 82-170 (446)
293 PRK14963 DNA polymerase III su 82.2 9.5 0.00021 45.0 11.2 41 141-181 19-62 (504)
294 PTZ00293 thymidine kinase; Pro 82.1 4.4 9.6E-05 41.8 7.4 35 159-209 8-42 (211)
295 PRK05896 DNA polymerase III su 82.1 17 0.00036 43.6 13.1 43 141-183 21-66 (605)
296 TIGR00708 cobA cob(I)alamin ad 82.0 5.3 0.00011 39.9 7.7 56 262-320 92-151 (173)
297 PF00265 TK: Thymidine kinase; 81.9 6.4 0.00014 39.5 8.4 20 160-179 6-25 (176)
298 PRK08903 DnaA regulatory inact 81.3 7.7 0.00017 40.4 9.2 27 154-180 41-67 (227)
299 PRK14722 flhF flagellar biosyn 81.3 9.9 0.00021 42.9 10.4 22 158-179 140-161 (374)
300 KOG0738 AAA+-type ATPase [Post 81.2 6 0.00013 44.0 8.2 104 156-312 246-367 (491)
301 COG0552 FtsY Signal recognitio 81.1 7.5 0.00016 42.6 8.9 118 160-312 144-276 (340)
302 PRK14959 DNA polymerase III su 81.0 24 0.00053 42.4 14.0 42 141-182 21-65 (624)
303 PRK09111 DNA polymerase III su 80.9 22 0.00047 42.9 13.7 43 141-183 29-74 (598)
304 PRK05728 DNA polymerase III su 80.4 31 0.00067 33.3 12.2 116 514-657 11-126 (142)
305 PF04364 DNA_pol3_chi: DNA pol 80.2 13 0.00027 35.7 9.4 113 518-657 15-127 (137)
306 PF00580 UvrD-helicase: UvrD/R 80.1 2.9 6.2E-05 45.6 5.7 57 137-211 1-57 (315)
307 PRK10917 ATP-dependent DNA hel 80.0 9.5 0.00021 46.9 10.6 95 512-608 290-389 (681)
308 COG4626 Phage terminase-like p 79.6 18 0.00038 42.4 11.8 132 131-283 56-200 (546)
309 PRK14950 DNA polymerase III su 79.6 26 0.00056 42.3 13.9 41 141-181 21-64 (585)
310 COG1702 PhoH Phosphate starvat 78.8 0.85 1.8E-05 49.8 0.9 41 267-309 243-283 (348)
311 PF05707 Zot: Zonular occluden 78.4 6.1 0.00013 40.2 7.1 21 160-180 5-26 (193)
312 PRK14088 dnaA chromosomal repl 78.4 25 0.00054 40.8 12.9 25 157-181 132-156 (440)
313 PRK14953 DNA polymerase III su 78.0 38 0.00083 39.8 14.3 41 141-181 21-64 (486)
314 PF02606 LpxK: Tetraacyldisacc 78.0 14 0.00029 41.1 10.1 138 165-309 47-192 (326)
315 PRK06090 DNA polymerase III su 77.6 18 0.0004 39.9 10.9 48 136-183 3-53 (319)
316 PHA03372 DNA packaging termina 77.6 9.5 0.00021 45.1 8.9 119 157-304 205-336 (668)
317 PRK06646 DNA polymerase III su 77.5 29 0.00063 34.0 11.1 87 513-614 10-96 (154)
318 PF05496 RuvB_N: Holliday junc 77.5 3.1 6.8E-05 43.2 4.5 22 157-178 52-73 (233)
319 PHA03368 DNA packaging termina 77.4 13 0.00029 44.5 10.1 125 157-304 256-389 (738)
320 PRK12422 chromosomal replicati 77.3 9 0.0002 44.4 8.8 25 156-180 142-166 (445)
321 PRK09183 transposase/IS protei 76.7 14 0.00031 39.5 9.6 35 141-179 92-126 (259)
322 PRK05642 DNA replication initi 76.7 9.9 0.00021 40.0 8.3 37 268-304 98-138 (234)
323 PRK00771 signal recognition pa 76.1 17 0.00036 42.1 10.5 23 158-180 98-120 (437)
324 KOG0442 Structure-specific end 76.0 2.1E+02 0.0045 35.5 19.8 183 133-342 10-203 (892)
325 CHL00206 ycf2 Ycf2; Provisiona 75.7 6.7 0.00014 52.2 7.6 40 156-214 1631-1670(2281)
326 PRK06964 DNA polymerase III su 75.6 23 0.00049 39.6 11.0 47 137-183 2-49 (342)
327 PRK07133 DNA polymerase III su 75.3 19 0.00042 44.0 11.0 42 141-182 23-67 (725)
328 PRK14873 primosome assembly pr 75.0 14 0.00031 45.0 10.0 79 514-594 170-250 (665)
329 PRK00411 cdc6 cell division co 75.0 19 0.00041 40.9 10.7 43 138-180 35-80 (394)
330 TIGR02397 dnaX_nterm DNA polym 74.8 20 0.00043 40.1 10.7 42 141-182 19-63 (355)
331 PRK13709 conjugal transfer nic 74.6 24 0.00052 47.6 12.5 140 130-307 961-1101(1747)
332 PRK04132 replication factor C 74.5 12 0.00026 46.7 9.2 48 267-314 630-678 (846)
333 PRK12727 flagellar biosynthesi 74.4 40 0.00087 39.8 12.9 21 160-180 355-375 (559)
334 KOG0737 AAA+-type ATPase [Post 74.4 4.7 0.0001 44.5 5.1 29 151-179 123-151 (386)
335 COG0470 HolB ATPase involved i 74.2 12 0.00026 41.1 8.6 27 158-184 27-53 (325)
336 PRK10416 signal recognition pa 74.2 17 0.00038 40.1 9.6 48 266-313 195-252 (318)
337 PRK06305 DNA polymerase III su 74.1 9.2 0.0002 44.5 7.8 42 141-182 22-66 (451)
338 PRK13342 recombination factor 73.8 6.5 0.00014 45.2 6.5 22 157-178 38-59 (413)
339 PRK00080 ruvB Holliday junctio 73.8 42 0.00092 37.2 12.8 24 156-179 52-75 (328)
340 PRK14712 conjugal transfer nic 73.8 22 0.00047 47.4 11.7 140 132-309 831-971 (1623)
341 TIGR00643 recG ATP-dependent D 73.1 17 0.00038 44.2 10.2 97 512-610 264-365 (630)
342 TIGR02640 gas_vesic_GvpN gas v 73.1 8.4 0.00018 41.3 6.8 40 139-178 5-44 (262)
343 TIGR03345 VI_ClpV1 type VI sec 73.0 25 0.00053 44.4 11.7 39 141-179 192-232 (852)
344 PRK07399 DNA polymerase III su 73.0 40 0.00086 37.3 12.1 43 141-183 9-54 (314)
345 CHL00176 ftsH cell division pr 73.0 17 0.00037 44.1 10.0 24 155-178 216-239 (638)
346 PF06745 KaiC: KaiC; InterPro 72.3 9.2 0.0002 39.8 6.7 51 157-222 21-71 (226)
347 PRK03992 proteasome-activating 72.2 8.1 0.00018 44.1 6.7 25 155-179 165-189 (389)
348 PRK11054 helD DNA helicase IV; 72.1 5.8 0.00013 48.6 5.7 68 136-221 196-264 (684)
349 PRK14086 dnaA chromosomal repl 71.9 25 0.00054 42.3 10.7 100 157-305 316-419 (617)
350 TIGR00678 holB DNA polymerase 71.3 28 0.0006 35.0 9.7 26 157-182 16-41 (188)
351 PRK08058 DNA polymerase III su 71.2 15 0.00032 40.9 8.4 45 139-183 9-56 (329)
352 TIGR00365 monothiol glutaredox 71.1 28 0.00061 31.1 8.6 50 531-580 10-65 (97)
353 TIGR03689 pup_AAA proteasome A 71.0 12 0.00025 44.1 7.7 26 154-179 215-240 (512)
354 COG1435 Tdk Thymidine kinase [ 71.0 12 0.00026 37.9 6.7 108 159-303 8-117 (201)
355 PF03354 Terminase_1: Phage Te 70.9 27 0.00059 40.9 10.9 131 139-292 1-146 (477)
356 TIGR01242 26Sp45 26S proteasom 70.8 9.2 0.0002 43.1 6.7 25 155-179 156-180 (364)
357 PRK06067 flagellar accessory p 70.8 12 0.00026 39.3 7.1 50 156-221 26-75 (234)
358 PRK14971 DNA polymerase III su 70.3 84 0.0018 38.1 15.0 42 141-182 22-66 (614)
359 COG2255 RuvB Holliday junction 70.2 4.7 0.0001 43.1 3.8 24 156-179 53-76 (332)
360 COG1198 PriA Primosomal protei 70.1 12 0.00026 45.8 7.7 81 511-593 224-305 (730)
361 TIGR03346 chaperone_ClpB ATP-d 70.0 18 0.0004 45.7 9.7 40 141-180 178-219 (852)
362 PHA00350 putative assembly pro 69.8 8.8 0.00019 43.6 6.1 14 269-282 83-96 (399)
363 TIGR00682 lpxK tetraacyldisacc 69.7 21 0.00046 39.3 9.0 112 165-281 40-153 (311)
364 PRK13894 conjugal transfer ATP 69.5 92 0.002 34.5 14.0 130 137-316 133-262 (319)
365 PRK06731 flhF flagellar biosyn 69.2 54 0.0012 35.3 11.7 126 157-320 77-211 (270)
366 PRK05342 clpX ATP-dependent pr 69.1 12 0.00027 42.8 7.2 53 127-179 59-132 (412)
367 PTZ00454 26S protease regulato 69.0 5.6 0.00012 45.4 4.5 25 154-178 178-202 (398)
368 COG3973 Superfamily I DNA and 69.0 12 0.00026 44.1 6.9 67 135-216 211-277 (747)
369 TIGR02760 TraI_TIGR conjugativ 68.9 36 0.00079 46.9 12.6 141 135-309 428-570 (1960)
370 KOG0298 DEAD box-containing he 68.7 2.8 6.2E-05 52.7 2.1 122 533-660 1222-1343(1394)
371 PRK10865 protein disaggregatio 68.0 23 0.00049 44.8 9.9 39 142-180 184-224 (857)
372 cd00561 CobA_CobO_BtuR ATP:cor 67.6 22 0.00047 35.1 7.6 52 262-313 90-145 (159)
373 PRK08699 DNA polymerase III su 67.5 32 0.00068 38.2 9.8 47 137-183 2-49 (325)
374 PHA02244 ATPase-like protein 67.1 48 0.001 37.4 11.0 27 153-179 117-143 (383)
375 PF00308 Bac_DnaA: Bacterial d 66.7 1.1E+02 0.0024 31.7 13.3 37 267-303 97-137 (219)
376 TIGR01243 CDC48 AAA family ATP 66.5 9.5 0.00021 47.4 6.1 42 155-215 487-528 (733)
377 PF01443 Viral_helicase1: Vira 65.9 12 0.00027 38.8 6.1 41 267-310 62-102 (234)
378 TIGR03878 thermo_KaiC_2 KaiC d 65.9 20 0.00043 38.4 7.7 22 159-180 40-61 (259)
379 PF01695 IstB_IS21: IstB-like 65.5 7.8 0.00017 39.0 4.2 29 153-181 45-73 (178)
380 KOG0780 Signal recognition par 65.4 7.3 0.00016 43.3 4.1 21 160-180 106-126 (483)
381 KOG0736 Peroxisome assembly fa 65.3 99 0.0022 37.9 13.5 27 153-179 703-729 (953)
382 TIGR02030 BchI-ChlI magnesium 65.2 28 0.00061 38.8 8.9 39 141-179 9-49 (337)
383 PF07015 VirC1: VirC1 protein; 65.0 25 0.00054 36.8 7.8 53 165-233 12-68 (231)
384 PRK00652 lpxK tetraacyldisacch 64.7 35 0.00076 37.8 9.5 109 165-281 61-174 (325)
385 TIGR01243 CDC48 AAA family ATP 64.5 25 0.00055 43.7 9.3 25 155-179 212-236 (733)
386 TIGR00416 sms DNA repair prote 64.3 26 0.00057 40.7 8.8 49 157-221 96-144 (454)
387 PRK13341 recombination factor 64.3 53 0.0011 40.6 11.7 23 156-178 53-75 (725)
388 cd03028 GRX_PICOT_like Glutare 63.9 32 0.00069 30.1 7.4 59 531-590 6-70 (90)
389 TIGR02688 conserved hypothetic 63.8 29 0.00063 39.7 8.6 32 147-178 201-232 (449)
390 CHL00095 clpC Clp protease ATP 63.4 27 0.00058 44.0 9.3 26 155-180 200-225 (821)
391 PF05127 Helicase_RecD: Helica 62.7 5.6 0.00012 39.9 2.6 34 267-305 90-123 (177)
392 TIGR01241 FtsH_fam ATP-depende 62.4 24 0.00052 41.6 8.2 24 155-178 88-111 (495)
393 PRK10824 glutaredoxin-4; Provi 62.3 38 0.00082 31.4 7.7 64 531-595 13-83 (115)
394 KOG0733 Nuclear AAA ATPase (VC 61.7 66 0.0014 38.3 11.0 46 155-219 545-590 (802)
395 TIGR03499 FlhF flagellar biosy 61.5 32 0.0007 37.3 8.4 22 159-180 198-219 (282)
396 TIGR00580 mfd transcription-re 61.1 40 0.00087 42.8 10.2 95 512-608 480-579 (926)
397 TIGR02760 TraI_TIGR conjugativ 61.0 39 0.00084 46.7 10.6 133 135-307 1018-1151(1960)
398 PRK14721 flhF flagellar biosyn 60.3 72 0.0016 36.7 11.2 55 267-322 269-328 (420)
399 COG0626 MetC Cystathionine bet 60.1 23 0.00049 40.3 7.0 91 514-629 84-175 (396)
400 COG0541 Ffh Signal recognition 59.7 28 0.00062 39.6 7.5 106 165-301 110-218 (451)
401 PHA00012 I assembly protein 59.4 23 0.00051 38.9 6.6 23 161-183 7-29 (361)
402 TIGR02639 ClpA ATP-dependent C 59.3 26 0.00057 43.5 8.1 39 142-180 188-228 (731)
403 KOG1133 Helicase of the DEAD s 59.1 14 0.00031 44.0 5.2 45 136-180 15-59 (821)
404 COG3972 Superfamily I DNA and 59.1 41 0.00088 38.8 8.5 133 165-322 186-341 (660)
405 TIGR02974 phageshock_pspF psp 58.7 95 0.0021 34.5 11.7 24 153-176 20-43 (329)
406 TIGR01547 phage_term_2 phage t 58.5 14 0.00031 42.0 5.3 38 268-307 102-142 (396)
407 COG2812 DnaX DNA polymerase II 58.0 22 0.00048 41.7 6.7 43 141-183 21-66 (515)
408 PF05970 PIF1: PIF1-like helic 58.0 24 0.00053 39.8 7.0 62 136-213 1-64 (364)
409 KOG0739 AAA+-type ATPase [Post 57.9 23 0.0005 38.2 6.1 46 156-220 167-212 (439)
410 COG1066 Sms Predicted ATP-depe 57.8 59 0.0013 36.9 9.5 87 159-282 97-183 (456)
411 PRK12724 flagellar biosynthesi 57.8 77 0.0017 36.4 10.7 56 266-322 298-361 (432)
412 PRK06995 flhF flagellar biosyn 57.7 59 0.0013 38.1 10.1 20 160-179 261-280 (484)
413 PRK05973 replicative DNA helic 57.2 12 0.00025 39.6 3.9 27 154-180 63-89 (237)
414 PF13607 Succ_CoA_lig: Succiny 57.1 44 0.00095 32.1 7.5 85 534-639 3-89 (138)
415 COG2109 BtuR ATP:corrinoid ade 56.4 1.4E+02 0.003 30.3 10.9 60 261-320 116-179 (198)
416 TIGR02655 circ_KaiC circadian 55.9 26 0.00056 41.3 6.9 51 156-222 264-314 (484)
417 PRK10919 ATP-dependent DNA hel 55.9 13 0.00028 45.7 4.6 67 136-220 2-69 (672)
418 PRK10689 transcription-repair 55.7 57 0.0012 42.6 10.4 96 512-608 629-728 (1147)
419 PRK01906 tetraacyldisaccharide 55.3 54 0.0012 36.6 8.9 110 165-281 68-180 (338)
420 TIGR02012 tigrfam_recA protein 55.0 48 0.001 36.7 8.3 39 159-213 59-97 (321)
421 cd01122 GP4d_helicase GP4d_hel 55.0 34 0.00073 36.6 7.2 27 154-180 29-55 (271)
422 cd02037 MRP-like MRP (Multiple 55.0 65 0.0014 31.6 8.8 53 266-322 66-118 (169)
423 PRK08939 primosomal protein Dn 54.2 31 0.00066 38.0 6.7 37 144-180 143-181 (306)
424 cd03418 GRX_GRXb_1_3_like Glut 53.5 70 0.0015 26.4 7.5 57 534-590 1-58 (75)
425 PRK11034 clpA ATP-dependent Cl 53.4 34 0.00074 42.5 7.6 26 155-180 207-232 (758)
426 COG2256 MGS1 ATPase related to 53.4 53 0.0012 37.1 8.2 23 156-178 49-71 (436)
427 PRK05564 DNA polymerase III su 53.1 97 0.0021 34.0 10.6 42 141-182 9-53 (313)
428 TIGR01818 ntrC nitrogen regula 52.8 84 0.0018 36.5 10.6 58 142-215 144-201 (463)
429 KOG0742 AAA+-type ATPase [Post 52.8 18 0.0004 40.5 4.5 63 157-233 356-419 (630)
430 COG1419 FlhF Flagellar GTP-bin 52.2 1.2E+02 0.0026 34.5 10.9 54 268-323 282-341 (407)
431 PF13173 AAA_14: AAA domain 52.2 12 0.00026 35.1 2.8 36 267-306 61-99 (128)
432 cd03115 SRP The signal recogni 51.9 79 0.0017 31.1 8.8 22 159-180 4-25 (173)
433 KOG0953 Mitochondrial RNA heli 51.9 21 0.00046 41.6 5.0 114 161-305 197-314 (700)
434 PRK06904 replicative DNA helic 51.6 80 0.0017 37.0 10.0 55 148-217 214-268 (472)
435 PRK07414 cob(I)yrinic acid a,c 51.5 52 0.0011 33.0 7.2 55 262-319 110-168 (178)
436 PRK14723 flhF flagellar biosyn 51.5 87 0.0019 38.8 10.5 21 159-179 189-209 (767)
437 cd01125 repA Hexameric Replica 51.4 28 0.00061 36.6 5.8 59 158-220 4-65 (239)
438 TIGR02782 TrbB_P P-type conjug 51.2 34 0.00074 37.4 6.5 35 145-179 122-156 (299)
439 KOG0734 AAA+-type ATPase conta 51.1 81 0.0018 36.9 9.3 23 155-177 337-359 (752)
440 TIGR00064 ftsY signal recognit 50.6 62 0.0013 34.9 8.3 21 160-180 77-97 (272)
441 PRK07276 DNA polymerase III su 50.5 1.2E+02 0.0027 32.9 10.5 46 137-183 3-50 (290)
442 PF02702 KdpD: Osmosensitive K 49.5 61 0.0013 33.2 7.3 25 158-182 8-32 (211)
443 PF06068 TIP49: TIP49 C-termin 49.1 35 0.00076 38.2 6.1 40 140-179 31-74 (398)
444 PRK09302 circadian clock prote 49.0 42 0.00092 39.7 7.3 47 159-221 277-323 (509)
445 PRK13833 conjugal transfer pro 48.4 40 0.00087 37.3 6.5 42 136-180 128-169 (323)
446 KOG0745 Putative ATP-dependent 48.0 27 0.00059 39.6 5.0 78 155-280 226-304 (564)
447 cd00983 recA RecA is a bacter 47.5 73 0.0016 35.3 8.3 37 159-211 59-95 (325)
448 TIGR03877 thermo_KaiC_1 KaiC d 47.4 37 0.0008 35.7 5.9 49 155-219 21-69 (237)
449 COG1102 Cmk Cytidylate kinase 47.2 16 0.00035 35.9 2.8 24 831-854 33-56 (179)
450 PRK10923 glnG nitrogen regulat 47.1 1.9E+02 0.0041 33.7 12.4 22 154-175 160-181 (469)
451 PF03237 Terminase_6: Terminas 46.6 55 0.0012 36.2 7.6 22 261-282 91-112 (384)
452 PF00437 T2SE: Type II/IV secr 46.1 28 0.00061 37.3 4.8 35 145-179 117-151 (270)
453 cd00046 DEXDc DEAD-like helica 45.9 95 0.002 28.2 8.0 60 512-571 8-72 (144)
454 PRK11773 uvrD DNA-dependent he 45.7 34 0.00074 42.4 6.1 68 135-220 8-76 (721)
455 PRK10867 signal recognition pa 45.6 76 0.0017 36.7 8.4 22 159-180 104-125 (433)
456 TIGR01075 uvrD DNA helicase II 45.6 30 0.00065 42.9 5.6 68 136-221 4-72 (715)
457 COG2247 LytB Putative cell wal 45.3 78 0.0017 34.5 7.7 68 520-590 67-139 (337)
458 TIGR03881 KaiC_arch_4 KaiC dom 45.1 44 0.00094 34.7 6.0 26 155-180 20-45 (229)
459 PF13654 AAA_32: AAA domain; P 44.9 7.2 0.00016 45.9 0.0 79 143-221 18-96 (509)
460 TIGR01425 SRP54_euk signal rec 44.9 1E+02 0.0023 35.5 9.3 21 160-180 105-125 (429)
461 PRK13900 type IV secretion sys 44.5 46 0.001 37.0 6.3 35 145-179 150-184 (332)
462 PRK10733 hflB ATP-dependent me 44.1 87 0.0019 38.3 9.1 24 155-178 185-208 (644)
463 TIGR01074 rep ATP-dependent DN 44.1 27 0.00058 42.9 4.8 67 137-221 2-69 (664)
464 KOG1807 Helicases [Replication 44.0 81 0.0017 38.4 8.2 71 136-220 378-449 (1025)
465 cd01129 PulE-GspE PulE/GspE Th 44.0 53 0.0012 35.2 6.5 43 134-179 61-104 (264)
466 KOG0652 26S proteasome regulat 43.5 41 0.00088 35.5 5.1 25 154-178 204-228 (424)
467 PTZ00062 glutaredoxin; Provisi 43.4 1.2E+02 0.0027 31.1 8.7 69 521-591 102-176 (204)
468 PF05729 NACHT: NACHT domain 43.3 1.3E+02 0.0027 28.8 8.7 24 159-182 4-27 (166)
469 TIGR00959 ffh signal recogniti 43.1 95 0.0021 35.9 8.7 23 158-180 102-124 (428)
470 COG2842 Uncharacterized ATPase 43.0 80 0.0017 34.2 7.4 37 267-306 165-203 (297)
471 TIGR03880 KaiC_arch_3 KaiC dom 42.7 50 0.0011 34.2 6.0 47 159-221 20-66 (224)
472 PRK09354 recA recombinase A; P 42.3 1.2E+02 0.0026 34.0 8.9 38 159-212 64-101 (349)
473 cd03031 GRX_GRX_like Glutaredo 42.2 96 0.0021 30.1 7.3 47 534-580 1-54 (147)
474 TIGR01054 rgy reverse gyrase. 41.9 1.2E+02 0.0025 39.9 10.1 79 512-592 101-186 (1171)
475 CHL00095 clpC Clp protease ATP 41.9 39 0.00083 42.7 5.8 42 140-181 513-565 (821)
476 PRK09302 circadian clock prote 41.8 70 0.0015 37.9 7.7 63 144-221 19-82 (509)
477 COG1222 RPT1 ATP-dependent 26S 40.6 32 0.00069 38.2 4.0 25 154-178 184-208 (406)
478 PRK14701 reverse gyrase; Provi 40.6 1.3E+02 0.0029 40.8 10.5 79 512-591 102-186 (1638)
479 PRK13531 regulatory ATPase Rav 40.6 36 0.00079 39.7 4.8 39 141-179 25-63 (498)
480 PRK12726 flagellar biosynthesi 39.8 79 0.0017 35.9 7.1 22 159-180 210-231 (407)
481 COG1200 RecG RecG-like helicas 39.4 1.9E+02 0.0041 35.0 10.4 93 514-608 293-390 (677)
482 COG0593 DnaA ATPase involved i 39.3 1.6E+02 0.0035 33.6 9.6 54 267-320 175-236 (408)
483 PRK08533 flagellar accessory p 39.2 61 0.0013 34.0 5.9 26 155-180 24-49 (230)
484 PRK05022 anaerobic nitric oxid 39.1 1.6E+02 0.0035 34.8 10.1 24 155-178 210-233 (509)
485 cd00268 DEADc DEAD-box helicas 38.5 4.2E+02 0.009 26.5 12.6 92 512-608 44-149 (203)
486 COG0467 RAD55 RecA-superfamily 38.4 57 0.0012 34.7 5.7 40 155-210 23-62 (260)
487 KOG1133 Helicase of the DEAD s 38.4 1.3E+02 0.0029 36.3 8.8 79 533-614 630-721 (821)
488 cd01524 RHOD_Pyr_redox Member 38.3 49 0.0011 28.6 4.3 38 530-567 49-86 (90)
489 KOG2028 ATPase related to the 38.0 2.3E+02 0.0051 31.7 10.0 21 157-177 164-184 (554)
490 KOG0730 AAA+-type ATPase [Post 37.9 1E+02 0.0022 37.0 7.9 25 154-178 467-491 (693)
491 KOG0733 Nuclear AAA ATPase (VC 37.9 94 0.002 37.0 7.4 75 154-281 222-296 (802)
492 cd01520 RHOD_YbbB Member of th 37.8 66 0.0014 30.1 5.4 39 529-567 83-122 (128)
493 PF12846 AAA_10: AAA-like doma 37.6 50 0.0011 35.4 5.3 59 518-579 239-300 (304)
494 TIGR00614 recQ_fam ATP-depende 37.3 1.8E+02 0.004 34.0 10.1 97 512-612 34-137 (470)
495 PRK05917 DNA polymerase III su 37.0 2E+02 0.0042 31.4 9.4 26 157-182 21-46 (290)
496 PRK04328 hypothetical protein; 36.5 64 0.0014 34.2 5.6 24 157-180 25-48 (249)
497 TIGR01073 pcrA ATP-dependent D 36.5 39 0.00084 42.0 4.6 56 136-209 4-59 (726)
498 PRK06620 hypothetical protein; 36.4 2.4E+02 0.0052 29.1 9.8 97 202-305 17-122 (214)
499 COG1224 TIP49 DNA helicase TIP 36.2 36 0.00078 37.8 3.6 26 154-179 64-89 (450)
500 PRK15115 response regulator Gl 36.2 2.2E+02 0.0047 32.8 10.5 22 155-176 157-178 (444)
No 1
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.1e-116 Score=982.86 Aligned_cols=658 Identities=37% Similarity=0.613 Sum_probs=535.2
Q ss_pred cccCCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEE
Q 044036 126 IIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLII 205 (875)
Q Consensus 126 ~~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV 205 (875)
.+.||..|+..|+|||++||+|||+++.++.|||||||||||||+|+|+||+++++.+ .-.+|+|||
T Consensus 195 ~~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~-------------k~~~paLIV 261 (923)
T KOG0387|consen 195 GFKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG-------------KLTKPALIV 261 (923)
T ss_pred cccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc-------------cccCceEEE
Confidence 3789999999999999999999999999999999999999999999999999997653 234999999
Q ss_pred cCcchHHHHHHHHHHhcC-CcEEEEeCCChh-------------HHHHHHHhCCceEEEeecccccccccccccccccEE
Q 044036 206 CPSSVIQNWEIEFSRWST-FNVSIYHGPNRD-------------MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIV 271 (875)
Q Consensus 206 ~P~sLl~qW~~E~~k~~~-~~v~v~~G~~r~-------------~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~V 271 (875)
||++++.||.+||.+|.| ++|.+|||.... ..+......+.+|+||||+.++...+.+..+.|++|
T Consensus 262 CP~Tii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ 341 (923)
T KOG0387|consen 262 CPATIIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYV 341 (923)
T ss_pred ccHHHHHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEE
Confidence 999999999999999998 999999998652 222222233457999999999999999999999999
Q ss_pred EEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHH
Q 044036 272 IVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERF 351 (875)
Q Consensus 272 IiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~ 351 (875)
|+||+|+|||++|+++.+|+++++.+||+||||||||++.|||+|++|+.||.+|+...|.+.|..||..|...+|+..+
T Consensus 342 ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~q 421 (923)
T KOG0387|consen 342 ILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQ 421 (923)
T ss_pred EecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhH
Q 044036 352 IRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQV 431 (875)
Q Consensus 352 ~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 431 (875)
.+.+++++..|+.++.||+|||+|.++.+..+|.|.|+|+||.||+.|+.+|++++++.++..+++...+|.+|
T Consensus 422 v~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~G------ 495 (923)
T KOG0387|consen 422 VQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSG------ 495 (923)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceec------
Confidence 99999999999999999999999999999788999999999999999999999999999999999987666554
Q ss_pred HHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCC
Q 044036 432 ECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSD 511 (875)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (875)
+..|+++||||.++.....+.. +.. +. ..+
T Consensus 496 -----------------------i~iLrkICnHPdll~~~~~~~~--~~~-----------D~--------------~g~ 525 (923)
T KOG0387|consen 496 -----------------------IDILRKICNHPDLLDRRDEDEK--QGP-----------DY--------------EGD 525 (923)
T ss_pred -----------------------hHHHHhhcCCcccccCcccccc--cCC-----------Cc--------------CCC
Confidence 6889999999999876432111 000 00 045
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHH-HcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLI-RKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~-~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
++.||||++|.+||..|+..|+|||+|||...|||+|+.+|. ..||.|+++||.|+...|+.+|++||++++.+|||++
T Consensus 526 ~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLT 605 (923)
T KOG0387|consen 526 PKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLT 605 (923)
T ss_pred hhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEE
Confidence 788999999999999999999999999999999999999999 6899999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCcchh
Q 044036 591 TRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEK 670 (875)
Q Consensus 591 t~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~~~~ 670 (875)
|++||.|||||+||+||||||+|||+.+.||..|||||||+|+|.||||++.|||||+||.||++|+.|.+.++.+..+.
T Consensus 606 TrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~ 685 (923)
T KOG0387|consen 606 TRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQR 685 (923)
T ss_pred ecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhcccccchhhhhcccccccH-HHHHHHHhhccccccccccccccccccccccccccccccccCCccc
Q 044036 671 RYFEGVQDCKEFQGELFGICNLFRDLSDNLFTS-EIIESHEEQGQQQERHHCTNQGFKGLETHIVSSKDSNTLLSTGSKT 749 (875)
Q Consensus 671 r~f~~v~~~~~~~gelfg~~~lf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (875)
|||++.+....|....||..+.+...+...+.. +.++.+.....+ ..+ ..++..... .....--+..+...
T Consensus 686 RfF~~~dl~dLFsl~~~G~~~~~te~~~~~~~~~~~~~lk~~~~~~-~~~---~~~l~~l~~----~~~~~~~~~~~~~~ 757 (923)
T KOG0387|consen 686 RFFKGNDLHDLFSLKDFGDDGESTETSSKEVHRNEKVNLKRNSSID-FEE---KEDLLALSK----HSELSSSVSNGSSE 757 (923)
T ss_pred hhcccccHHHHhCCCCCCcCcchhhhhhhhhhhhHHHHHhhccccc-chh---hhhhhhhcc----ccccccccCchHHH
Confidence 999999999999999999999888877666665 333333221111 011 111111100 00000001111111
Q ss_pred ccCCCchhcccchhhhhccc--eeeEeeccccccCCccc-chhhhhccC-----CCCCCC-CCCcccc--cccccccCCC
Q 044036 750 RKSSDPEMARTSKPLLEDMG--IVYAHRNDDIVNKQPGF-QRKKEESIP-----QDLSSR-PPPIHSK--RRNLLDCADG 818 (875)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~g--v~y~h~n~~vi~~~~~~-~~~~~~~~~-----~~~~~~-~~~~~~~--~~~~~~~~~~ 818 (875)
..-.....++...+||-+.+ |+|.|+|++..|+-..+ ++-+-+... .+.... ..+-.+. .+..+.++..
T Consensus 758 ~e~~~~~~~e~~~~ilg~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~n~~~s~dr~~~~~~~~s~~~~~t~~~g~~g~~~ 837 (923)
T KOG0387|consen 758 EEVEEAKDREMIKPILGSLSDSVVNNHRNEEEKNIIETEASTSVKRANDALSDDRKLSKRKGCSGEETWTDSSGEAGKVE 837 (923)
T ss_pred HHHHHHhhhhhhhhhhccchhhhHHhhhhhhhhccccccccchhhhhccccccchhhhhhcccccCcchhhccccCCCcc
Confidence 11011222335678999999 99999999999977654 222222110 011111 0000000 0011111111
Q ss_pred ccccCCchHHHHHHHHHHHHHcCCChhHHHHHHhhcCHHHHHHHHHHHHHhc
Q 044036 819 KESLASSKDRKNIEYSLLARFMGMDVFEFSKWILSATPSAREKLLQDYRKRK 870 (875)
Q Consensus 819 ~~~~~~~~~~~~~qf~~~a~~~g~~~~ef~~~~~~~t~~~r~~~l~~~~~~~ 870 (875)
+ |.+.+. -+.+-++..+.+.+|+.+|++..|++.|+.+.+..
T Consensus 838 r-----~~~~k~-----~~~~~~~~~~~~t~~~ksa~~~~~~e~~d~~~~~~ 879 (923)
T KOG0387|consen 838 R-----PSDYKM-----KIESTANELLNITKDVKSASKNGRQELLDSGLKFS 879 (923)
T ss_pred c-----Cchhcc-----hhHHHHHHHHHHhhccccccccccHHHHHhhHhhh
Confidence 1 222222 23333445689999999999999999999976655
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.2e-102 Score=867.42 Aligned_cols=510 Identities=35% Similarity=0.586 Sum_probs=430.5
Q ss_pred CCchhh-hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC
Q 044036 129 VPASIN-CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP 207 (875)
Q Consensus 129 vP~~i~-~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P 207 (875)
.|..+. ..|||||++|++||+.+|.++.+||||||||||||+|+|+|+.++... .+..||+||+||
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~-------------~~~~GPfLVi~P 225 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGR-------------KGIPGPFLVIAP 225 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHh-------------cCCCCCeEEEee
Confidence 578887 899999999999999999999999999999999999999999998653 235899999999
Q ss_pred cchHHHHHHHHHHhcC-CcEEEEeCCChh--HHH-HHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcc
Q 044036 208 SSVIQNWEIEFSRWST-FNVSIYHGPNRD--MIL-EKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 208 ~sLl~qW~~E~~k~~~-~~v~v~~G~~r~--~~~-~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~ 283 (875)
.|++.||.+||.+|+| +++++|+|+... ... ..+..+.++|+||||++..++...|..+.|.++||||||+|||.+
T Consensus 226 ~StL~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~ 305 (971)
T KOG0385|consen 226 KSTLDNWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEK 305 (971)
T ss_pred HhhHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchh
Confidence 9999999999999999 999999998643 233 334456899999999999999999999999999999999999999
Q ss_pred cHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHH
Q 044036 284 SKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363 (875)
Q Consensus 284 S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~ 363 (875)
|.+++.++.+++.+||+|||||+|||+.|||+||+|+.|+.|++.+.|..||......+. .+...+|+
T Consensus 306 s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~------------~e~v~~Lh 373 (971)
T KOG0385|consen 306 SKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGD------------QELVSRLH 373 (971)
T ss_pred hHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccC------------HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987644432 23567899
Q ss_pred HHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCC
Q 044036 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGC 443 (875)
Q Consensus 364 ~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (875)
.+|+||+|||+|.+|... +|+|.+.++||.|++.|++.|..++... +..+. +.
T Consensus 374 ~vL~pFlLRR~K~dVe~s-LppKkE~~iyvgms~mQkk~Y~~iL~kd-l~~~n-------------------------~~ 426 (971)
T KOG0385|consen 374 KVLRPFLLRRIKSDVEKS-LPPKKELIIYVGMSSMQKKWYKAILMKD-LDALN-------------------------GE 426 (971)
T ss_pred hhhhHHHHHHHHHhHhhc-CCCcceeeEeccchHHHHHHHHHHHHhc-chhhc-------------------------cc
Confidence 999999999999999887 5788999999999999999999988632 11111 11
Q ss_pred CCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHH
Q 044036 444 DSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEK 523 (875)
Q Consensus 444 ~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~ 523 (875)
.......+.+.++.||+|||||+|+..-.... ....+.+.+..||||.+|.+
T Consensus 427 ~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~----------------------------pyttdehLv~nSGKm~vLDk 478 (971)
T KOG0385|consen 427 GKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGP----------------------------PYTTDEHLVTNSGKMLVLDK 478 (971)
T ss_pred ccchhhHHHHHHHHHHHhcCCccccCCCCCCC----------------------------CCCcchHHHhcCcceehHHH
Confidence 11124568899999999999999986411100 01112233678999999999
Q ss_pred HHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCC-ceEEEEecCCcccccCCCC
Q 044036 524 LMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPS-KQVFLISTRAGGLGLNLVS 602 (875)
Q Consensus 524 LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~-~~v~LiSt~agg~GLNL~~ 602 (875)
||.++.+.|+|||||||++.|||+|++++..+||.|+||||+|+.++|...|+.||.+++ .+|||+||+|||.||||++
T Consensus 479 LL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~a 558 (971)
T KOG0385|consen 479 LLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTA 558 (971)
T ss_pred HHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999874 5899999999999999999
Q ss_pred CCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCc-chhhhhhccccchh
Q 044036 603 ANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK-LEKRYFEGVQDCKE 681 (875)
Q Consensus 603 An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~-~~~r~f~~v~~~~~ 681 (875)
||+||+||.+|||+.+.||++|||||||+++|.||||++++||||+|+.|+..|.+|.++|+.++ +....-.++..+.-
T Consensus 559 ADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~ 638 (971)
T KOG0385|consen 559 ADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGRLEEQKSNGLGKDEL 638 (971)
T ss_pred ccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCchhhhhccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876 33322222222212
Q ss_pred hhhcccccchhhhhcccccccHHHHHHHHhhcccccccc
Q 044036 682 FQGELFGICNLFRDLSDNLFTSEIIESHEEQGQQQERHH 720 (875)
Q Consensus 682 ~~gelfg~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (875)
..---||...+|..- ++..++ .++.+.+.++..+++.
T Consensus 639 l~~~r~g~~~~f~~~-es~~~d-Did~il~~~e~kt~e~ 675 (971)
T KOG0385|consen 639 LNLLRFGADPVFESK-ESTISD-DIDRILERGEEKTAEL 675 (971)
T ss_pred HHHHHcCchhhhhhc-ccccch-hHHHHHHhhhhhccCc
Confidence 222236777767653 333333 4555555555555554
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=7.6e-93 Score=823.09 Aligned_cols=498 Identities=36% Similarity=0.597 Sum_probs=415.7
Q ss_pred CCchhh-hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC
Q 044036 129 VPASIN-CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP 207 (875)
Q Consensus 129 vP~~i~-~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P 207 (875)
.|..++ ..||+||++|++||+..|.++.+||||||||||||+|.|+||.+++... ...||+|||+|
T Consensus 362 qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~-------------~~~gpflvvvp 428 (1373)
T KOG0384|consen 362 QPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSL-------------QIHGPFLVVVP 428 (1373)
T ss_pred CccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhh-------------hccCCeEEEee
Confidence 455554 5999999999999999999999999999999999999999999997542 36899999999
Q ss_pred cchHHHHHHHHHHhcCCcEEEEeCCChhHH-HHH---HHhC-----CceEEEeecccccccccccccccccEEEEcCCcc
Q 044036 208 SSVIQNWEIEFSRWSTFNVSIYHGPNRDMI-LEK---LEAC-----GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHR 278 (875)
Q Consensus 208 ~sLl~qW~~E~~k~~~~~v~v~~G~~r~~~-~~~---~~~~-----~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ 278 (875)
.|.+.+|.+||..|+.+++++|+|+...+. ++. .... .|+++||||+++..+...|..++|.+++|||||+
T Consensus 429 lst~~~W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahr 508 (1373)
T KOG0384|consen 429 LSTITAWEREFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHR 508 (1373)
T ss_pred hhhhHHHHHHHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhh
Confidence 999999999999999999999999853322 221 1122 5899999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHH
Q 044036 279 LKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADER 358 (875)
Q Consensus 279 ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~ 358 (875)
+||..|.++..+..+...+|+++||||+||++.|||+|++|+.|+.|.+..+|...|..- ....
T Consensus 509 LkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~----------------~e~~ 572 (1373)
T KOG0384|consen 509 LKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEE----------------TEEQ 572 (1373)
T ss_pred cCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcch----------------hHHH
Confidence 999999999999999999999999999999999999999999999999999999888321 1334
Q ss_pred HHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhcc
Q 044036 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLD 438 (875)
Q Consensus 359 ~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 438 (875)
...|+..|.||||||.|++|.+.+ |+|.|.|+-|.||+.|+++|+.++... +..| ++
T Consensus 573 ~~~L~~~L~P~~lRr~kkdveksl-p~k~E~IlrVels~lQk~yYk~ILtkN-~~~L-tK-------------------- 629 (1373)
T KOG0384|consen 573 VRKLQQILKPFLLRRLKKDVEKSL-PPKEETILRVELSDLQKQYYKAILTKN-FSAL-TK-------------------- 629 (1373)
T ss_pred HHHHHHHhhHHHHHHHHhhhccCC-CCCcceEEEeehhHHHHHHHHHHHHhh-HHHH-hc--------------------
Confidence 678999999999999999887664 789999999999999999999998732 1111 11
Q ss_pred CCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchH
Q 044036 439 NLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKM 518 (875)
Q Consensus 439 ~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl 518 (875)
........+++.++.|++|||||+|+.+........... .. .++.+ ...+.+||||
T Consensus 630 ----G~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~--------~~----------~d~~L--~~lI~sSGKl 685 (1373)
T KOG0384|consen 630 ----GAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD--------KM----------RDEAL--QALIQSSGKL 685 (1373)
T ss_pred ----cCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh--------cc----------hHHHH--HHHHHhcCcE
Confidence 111122468999999999999999997532211110000 00 00000 1125679999
Q ss_pred HHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCc-eEEEEecCCcccc
Q 044036 519 RALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSK-QVFLISTRAGGLG 597 (875)
Q Consensus 519 ~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~-~v~LiSt~agg~G 597 (875)
-.|.+||.++.+.|||||||||+++|||+|+.||..+||+|-||||++..+-|+++|++||.+++. ||||+||+|||.|
T Consensus 686 VLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLG 765 (1373)
T KOG0384|consen 686 VLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLG 765 (1373)
T ss_pred EeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccc
Confidence 999999999999999999999999999999999999999999999999999999999999988765 8999999999999
Q ss_pred cCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhcc
Q 044036 598 LNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLE-KRYFEGV 676 (875)
Q Consensus 598 LNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~~~-~r~f~~v 676 (875)
|||++||+|||||++|||+.++||+.|||||||++.|.|||||++||+||-|++|+..|.-|..+|++-... ...-.+.
T Consensus 766 INLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~ 845 (1373)
T KOG0384|consen 766 INLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSN 845 (1373)
T ss_pred ccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999863321 1111122
Q ss_pred ccchhhhhcc--cccchhhhhccc--cccc
Q 044036 677 QDCKEFQGEL--FGICNLFRDLSD--NLFT 702 (875)
Q Consensus 677 ~~~~~~~gel--fg~~~lf~~~~~--~~~~ 702 (875)
+-+|+.-..| ||..++|+...+ +.+.
T Consensus 846 ~f~K~ELsaILKfGA~~lfke~ene~s~~~ 875 (1373)
T KOG0384|consen 846 PFSKEELSAILKFGAYELFKEEENEESKFC 875 (1373)
T ss_pred CCCHHHHHHHHHhchHHhhhcccccccccc
Confidence 2233322222 999999998543 3444
No 4
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-90 Score=787.86 Aligned_cols=512 Identities=33% Similarity=0.584 Sum_probs=425.7
Q ss_pred ccCCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEc
Q 044036 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIIC 206 (875)
Q Consensus 127 ~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~ 206 (875)
..+|..+...||+||..|+.||..+|.++-+||||||||||||+|+|+|++++... .+++||+|||+
T Consensus 606 tpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACe-------------egnWGPHLIVV 672 (1958)
T KOG0391|consen 606 TPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACE-------------EGNWGPHLIVV 672 (1958)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhc-------------ccCCCCceEEe
Confidence 67999999999999999999999999999999999999999999999999998654 45799999999
Q ss_pred CcchHHHHHHHHHHhcC-CcEEEEeCCChhHHHH---HHHhCCceEEEeecccccccccccccccccEEEEcCCccccCc
Q 044036 207 PSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILE---KLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNE 282 (875)
Q Consensus 207 P~sLl~qW~~E~~k~~~-~~v~v~~G~~r~~~~~---~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~ 282 (875)
|++++.||+-||++|+| +++..|+|+.++.... +.+.+.|+|+||||..+..+...|...+|.|+|+||||+|||.
T Consensus 673 pTsviLnWEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnf 752 (1958)
T KOG0391|consen 673 PTSVILNWEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNF 752 (1958)
T ss_pred echhhhhhhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcch
Confidence 99999999999999999 9999999997654332 2344568999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHH
Q 044036 283 KSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362 (875)
Q Consensus 283 ~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L 362 (875)
.|.+|+++..+++.+||+|||||+||++.|||+|++||.|..|.+...|+.||.+|+..-- +...+...+...+|
T Consensus 753 ksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmi-----Egsqeyn~klV~RL 827 (1958)
T KOG0391|consen 753 KSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMI-----EGSQEYNHKLVIRL 827 (1958)
T ss_pred hHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhc-----ccchhhchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999975211 11112235667899
Q ss_pred HHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCC
Q 044036 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDG 442 (875)
Q Consensus 363 ~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (875)
|++|++|+|||+|.+|.+. +|.|.|+||+|.|+..|+.+|+.++....-+.-+
T Consensus 828 HkVlrPfiLRRlK~dVEKQ-lpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetL-------------------------- 880 (1958)
T KOG0391|consen 828 HKVLRPFILRRLKRDVEKQ-LPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETL-------------------------- 880 (1958)
T ss_pred HHHhHHHHHHHHHHHHHHh-cchhhhhheeeehhhhHHHHHHHHhhccchhhHh--------------------------
Confidence 9999999999999988765 5799999999999999999999988743322221
Q ss_pred CCCCCccchhhHHHHHHHHhccccccCCCCCCCch---------------------hhhh--------------------
Q 044036 443 CDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPD---------------------KQRK-------------------- 481 (875)
Q Consensus 443 ~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~---------------------~~~~-------------------- 481 (875)
.+..+..++++++.||++||||.|+.+.+....- ....
T Consensus 881 -kSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pa 959 (1958)
T KOG0391|consen 881 -KSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPA 959 (1958)
T ss_pred -hcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchh
Confidence 1224667899999999999999998765321100 0000
Q ss_pred -----------hHH------------HHhhhcCC-------------------------------------------Ccc
Q 044036 482 -----------DAE------------LASAVFGP-------------------------------------------DID 495 (875)
Q Consensus 482 -----------~~e------------~~~~~~~~-------------------------------------------~~~ 495 (875)
... +....|.. ...
T Consensus 960 s~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n 1039 (1958)
T KOG0391|consen 960 SAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPN 1039 (1958)
T ss_pred hhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCC
Confidence 000 00000000 000
Q ss_pred ------------------------------c--------------------cCCCC------------------------
Q 044036 496 ------------------------------L--------------------VGGNA------------------------ 501 (875)
Q Consensus 496 ------------------------------~--------------------~~~~~------------------------ 501 (875)
+ +++..
T Consensus 1040 ~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~ 1119 (1958)
T KOG0391|consen 1040 TPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEP 1119 (1958)
T ss_pred CceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCC
Confidence 0 00000
Q ss_pred CCc------------------cccCCC-----------------------------------------------------
Q 044036 502 QNE------------------SFIGLS----------------------------------------------------- 510 (875)
Q Consensus 502 ~~~------------------~~~~~~----------------------------------------------------- 510 (875)
... .+.-++
T Consensus 1120 pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~p 1199 (1958)
T KOG0391|consen 1120 PRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIP 1199 (1958)
T ss_pred ccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecc
Confidence 000 000000
Q ss_pred ------------------------------------------------------C-cccCchHHHHHHHHHHhhcCCCeE
Q 044036 511 ------------------------------------------------------D-VKSCGKMRALEKLMYSWASKGDKI 535 (875)
Q Consensus 511 ------------------------------------------------------~-~~~s~Kl~~L~~LL~~~~~~g~KV 535 (875)
. -..|||++.|.-||+++..+||+|
T Consensus 1200 pvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRv 1279 (1958)
T KOG0391|consen 1200 PVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRV 1279 (1958)
T ss_pred cccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceE
Confidence 0 012899999999999999999999
Q ss_pred EEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCc
Q 044036 536 LLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNP 615 (875)
Q Consensus 536 LIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp 615 (875)
|||+|++.|||+|+.+|+..||-|+||||+++.++||.++.+||.|..+++|++||+.||+||||++||+|||||.+|||
T Consensus 1280 LIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNP 1359 (1958)
T KOG0391|consen 1280 LIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNP 1359 (1958)
T ss_pred EehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhccccchhhhhccccc
Q 044036 616 AQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG-KLEKRYFEGVQDCKEFQGELFGI 689 (875)
Q Consensus 616 ~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g-~~~~r~f~~v~~~~~~~gelfg~ 689 (875)
..|.||.+|+|||||+|+|+|||||++.||||+|+.+...|+.|-++++.| +....||... ..-+||+.
T Consensus 1360 tMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~-----ti~dLFd~ 1429 (1958)
T KOG0391|consen 1360 TMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQR-----TIRDLFDV 1429 (1958)
T ss_pred hhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhh-----hHHHHhcC
Confidence 999999999999999999999999999999999999999999999999874 6677888632 12256665
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-89 Score=767.10 Aligned_cols=495 Identities=33% Similarity=0.507 Sum_probs=404.0
Q ss_pred cCCchhh--hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEE
Q 044036 128 QVPASIN--CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLII 205 (875)
Q Consensus 128 ~vP~~i~--~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV 205 (875)
..|+.+. .+|+|||+.||+||+-.|..+-+||||||||||||+|+|||++++.+. +..||+|||
T Consensus 389 ~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~--------------g~~gpHLVV 454 (941)
T KOG0389|consen 389 EQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQI--------------GNPGPHLVV 454 (941)
T ss_pred cCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHc--------------CCCCCcEEE
Confidence 3666664 589999999999999999999999999999999999999999999754 358999999
Q ss_pred cCcchHHHHHHHHHHhcC-CcEEEEeCCCh--hHHHHHHHhC--CceEEEeecccccc---cccccccccccEEEEcCCc
Q 044036 206 CPSSVIQNWEIEFSRWST-FNVSIYHGPNR--DMILEKLEAC--GVEVLITSFDSYRI---HGSILSEVNWEIVIVDEAH 277 (875)
Q Consensus 206 ~P~sLl~qW~~E~~k~~~-~~v~v~~G~~r--~~~~~~~~~~--~~~VvItTy~~l~~---~~~~l~~~~w~~VIiDEAH 277 (875)
||+|++.||.+||.+|+| ++|..|||+.. ......+... +|+|++|||..+.. +...|...+|++||.||+|
T Consensus 455 vPsSTleNWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgH 534 (941)
T KOG0389|consen 455 VPSSTLENWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGH 534 (941)
T ss_pred ecchhHHHHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchh
Confidence 999999999999999999 99999999864 3444555544 79999999998874 4567888999999999999
Q ss_pred cccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCH-HHHHHHhcchhccCCCCCchhHHHHHHH
Q 044036 278 RLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTR-EHFREFYDEPLKHGQRLTAPERFIRIAD 356 (875)
Q Consensus 278 ~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~-~~F~~~~~~~i~~g~~~~~~~~~~~~~~ 356 (875)
.+||..|.+|+.+..+++..||+|||||+|||+.|||+||.|+.|..|.+. ..+...|..--+ .+......-+..
T Consensus 535 mLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~----~d~d~e~~~l~q 610 (941)
T KOG0389|consen 535 MLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKT----SDGDIENALLSQ 610 (941)
T ss_pred hhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCC----ccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999765 445555543211 122233344556
Q ss_pred HHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhh
Q 044036 357 ERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKR 436 (875)
Q Consensus 357 ~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 436 (875)
.+..+...++.||+|||.|.+|++++ |+|..+|.+|.|+..|+.+|..+++...... +. .+.
T Consensus 611 erIsrAK~im~PFILRR~K~qVL~~L-PpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~--~~----~~~----------- 672 (941)
T KOG0389|consen 611 ERISRAKTIMKPFILRRLKSQVLKQL-PPKIQRIEYCEMSEKQKQLYDELIELYDVKL--NE----VSK----------- 672 (941)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhc-CCccceeEeeecchHHHHHHHHHHHHHhhhc--cc----ccc-----------
Confidence 67888999999999999999999886 6899999999999999999999887431110 00 000
Q ss_pred ccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhc--------------CCCcccc---CC
Q 044036 437 LDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVF--------------GPDIDLV---GG 499 (875)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~--------------~~~~~~~---~~ 499 (875)
+.. .+. -..++.||+++|||-|+.....++.-..-...-+....+ ..++++- ..
T Consensus 673 --ns~------~~~-~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~ 743 (941)
T KOG0389|consen 673 --NSE------LKS-GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQ 743 (941)
T ss_pred --ccc------ccc-chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHh
Confidence 000 111 357999999999999987655544222111100000000 0011100 00
Q ss_pred CC-CCccccCCCCcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHh
Q 044036 500 NA-QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDF 578 (875)
Q Consensus 500 ~~-~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F 578 (875)
.. .....+....+..|||++.|..||.++..+|+||||||||+.|||+|+.+|...|+.|+|+||+|...+||.+|+.|
T Consensus 744 f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~F 823 (941)
T KOG0389|consen 744 FRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEF 823 (941)
T ss_pred cCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhh
Confidence 00 11111233346679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHH
Q 044036 579 NSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQ 658 (875)
Q Consensus 579 ~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~ 658 (875)
+.+.+++|||+||+|||.||||++||+||++|.++||..+.||.+|+||+||+|+|+|||||+++||||.|++.+..|..
T Consensus 824 n~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~ 903 (941)
T KOG0389|consen 824 NTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLA 903 (941)
T ss_pred ccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCc
Q 044036 659 LSNIAVSGK 667 (875)
Q Consensus 659 l~~~~~~g~ 667 (875)
|...+.+++
T Consensus 904 Le~~lt~~~ 912 (941)
T KOG0389|consen 904 LEADLTEDG 912 (941)
T ss_pred hhhhhccCc
Confidence 988776543
No 6
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=9.7e-89 Score=784.01 Aligned_cols=500 Identities=33% Similarity=0.541 Sum_probs=425.5
Q ss_pred CCCcccCCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcE
Q 044036 123 EYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYV 202 (875)
Q Consensus 123 ~~~~~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (875)
..+...+|..|...||.||.+||+|+..+.+.+-.||||||||||||+|+|.+++.-..+.... ......-|.
T Consensus 962 ki~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~-------~~e~~~~PS 1034 (1549)
T KOG0392|consen 962 KIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSE-------SSEFNRLPS 1034 (1549)
T ss_pred cCCccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhccc-------chhhccCCe
Confidence 3445789999999999999999999999999999999999999999999999998643222111 112346689
Q ss_pred EEEcCcchHHHHHHHHHHhcC-CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccC
Q 044036 203 LIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 203 LIV~P~sLl~qW~~E~~k~~~-~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn 281 (875)
|||||.+|..+|..|+.+|+| +++..|.|+...+..-+-.-.+.+|+||+|+.++++...+..+.|.++|+||+|-|||
T Consensus 1035 LIVCPsTLtGHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN 1114 (1549)
T KOG0392|consen 1035 LIVCPSTLTGHWKSEVKKFFPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKN 1114 (1549)
T ss_pred EEECCchhhhHHHHHHHHhcchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecc
Confidence 999999999999999999999 7999999986655444444445689999999999999999999999999999999999
Q ss_pred cccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHH
Q 044036 282 EKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361 (875)
Q Consensus 282 ~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 361 (875)
..++.+++++.|.+.+|+.|||||||||+.|||+|++||+||.+|+.+.|.+.|.+||.............+.+..+.+.
T Consensus 1115 ~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAlea 1194 (1549)
T KOG0392|consen 1115 SKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEA 1194 (1549)
T ss_pred hHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888889999999
Q ss_pred HHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCC
Q 044036 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLD 441 (875)
Q Consensus 362 L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (875)
||+..=||++||+|.+|++++ |||.-.-.||+|++.|+++|+.+....+. ....... ++ ....
T Consensus 1195 LHKqVLPF~LRRlKedVL~DL-PpKIIQDyyCeLs~lQ~kLY~df~~~~k~--~~~~~~d---~~-----------~~S~ 1257 (1549)
T KOG0392|consen 1195 LHKQVLPFLLRRLKEDVLKDL-PPKIIQDYYCELSPLQKKLYRDFVKKAKQ--CVSSQID---GG-----------EESL 1257 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHhhC-ChhhhhheeeccCHHHHHHHHHHHHHhcc--ccccccc---cc-----------hhcc
Confidence 999999999999999999987 57888899999999999999999874110 0000000 00 0001
Q ss_pred CCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHH
Q 044036 442 GCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRAL 521 (875)
Q Consensus 442 ~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L 521 (875)
+. ....+|..+..+|++||||.++.......... ..... ...-.++++...++|+.+|
T Consensus 1258 gt---~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~------i~~~l-------------~~~~~~LHdi~hspKl~AL 1315 (1549)
T KOG0392|consen 1258 GT---DKTHVFQALQYLRKLCNHPALVLTPVHPDLAA------IVSHL-------------AHFNSSLHDIQHSPKLSAL 1315 (1549)
T ss_pred Cc---chHHHHHHHHHHHHhcCCcceeeCCCcchHHH------HHHHH-------------HHhhhhHHHhhhchhHHHH
Confidence 11 14578999999999999999986532111100 00000 0011245667889999999
Q ss_pred HHHHHHhhc--------------CCCeEEEEecchhHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHhcCCCCc
Q 044036 522 EKLMYSWAS--------------KGDKILLFSYSVRMLDILEKFLIRK---GYSFSRLDGSTPSNLRQSLVDDFNSSPSK 584 (875)
Q Consensus 522 ~~LL~~~~~--------------~g~KVLIFs~~~~~ld~L~~~L~~~---g~~~~~ldG~~~~~eR~~~i~~F~~~~~~ 584 (875)
.+||....- .+||+|||||+..|+|++++-|-+. .+.|.|+||++++.+|++++.+||+||++
T Consensus 1316 ~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptI 1395 (1549)
T KOG0392|consen 1316 KQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTI 1395 (1549)
T ss_pred HHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCce
Confidence 999997631 4689999999999999999988654 67899999999999999999999999999
Q ss_pred eEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHh
Q 044036 585 QVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664 (875)
Q Consensus 585 ~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~ 664 (875)
.|+|++|.+||.|||||+||+||+++.+|||.+|.|||||||||||+|.|.|||||++||+||+|+..|..|...++.++
T Consensus 1396 DvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvI 1475 (1549)
T KOG0392|consen 1396 DVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVI 1475 (1549)
T ss_pred eEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcc
Q 044036 665 SGKL 668 (875)
Q Consensus 665 ~g~~ 668 (875)
+..+
T Consensus 1476 nqqN 1479 (1549)
T KOG0392|consen 1476 NQQN 1479 (1549)
T ss_pred hccc
Confidence 8654
No 7
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-88 Score=744.54 Aligned_cols=486 Identities=32% Similarity=0.592 Sum_probs=410.4
Q ss_pred cccCCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEE
Q 044036 126 IIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLII 205 (875)
Q Consensus 126 ~~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV 205 (875)
.++.|..+.++|++||+.|++||.++|.+|.+||||||||||||+|+|++++++.+.+ ..+||+|||
T Consensus 557 tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~-------------nIwGPFLVV 623 (1185)
T KOG0388|consen 557 TVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETH-------------NIWGPFLVV 623 (1185)
T ss_pred eccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhc-------------cCCCceEEe
Confidence 4788999999999999999999999999999999999999999999999999997653 469999999
Q ss_pred cCcchHHHHHHHHHHhcC-CcEEEEeCCChh-HHHHHH--------HhCCceEEEeecccccccccccccccccEEEEcC
Q 044036 206 CPSSVIQNWEIEFSRWST-FNVSIYHGPNRD-MILEKL--------EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDE 275 (875)
Q Consensus 206 ~P~sLl~qW~~E~~k~~~-~~v~v~~G~~r~-~~~~~~--------~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDE 275 (875)
+|+++++||.+||.+|+| +++..|.|+..+ .++.++ +..+++|+||||+++..+..+|..++|.++|+||
T Consensus 624 tpaStL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDE 703 (1185)
T KOG0388|consen 624 TPASTLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDE 703 (1185)
T ss_pred ehHHHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhH
Confidence 999999999999999999 999999998644 344443 2357899999999999999999999999999999
Q ss_pred CccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHH
Q 044036 276 AHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIA 355 (875)
Q Consensus 276 AH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~ 355 (875)
|+-||...|.+++.+..++|+.||+||||||||+..|||+||+|+.|..|++..+|.+||+..|+....... .+.
T Consensus 704 AQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~-----tln 778 (1185)
T KOG0388|consen 704 AQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNT-----TLN 778 (1185)
T ss_pred HHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcC-----CcC
Confidence 999999999999999999999999999999999999999999999999999999999999998875433322 234
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHh
Q 044036 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCK 435 (875)
Q Consensus 356 ~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 435 (875)
.+..++||.+|+||||||.|++|+.++ -.|++..|+|.||..|+.+|+.+-.....
T Consensus 779 eqqL~RLH~ILKPFMLRRvKkdV~sEL-g~Kteidv~CdLs~RQ~~lYq~ik~~iS~----------------------- 834 (1185)
T KOG0388|consen 779 EQQLQRLHAILKPFMLRRVKKDVISEL-GQKTEIDVYCDLSYRQKVLYQEIKRSISS----------------------- 834 (1185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHh-ccceEEEEEechhHHHHHHHHHHHHHhhH-----------------------
Confidence 566789999999999999999999876 48999999999999999999987653111
Q ss_pred hccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCC-------------------------chhhhhh-HH-----
Q 044036 436 RLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDE-------------------------PDKQRKD-AE----- 484 (875)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~-------------------------~~~~~~~-~e----- 484 (875)
.-....++.|+++||||.|+....... +.-..++ .+
T Consensus 835 -------------~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fn 901 (1185)
T KOG0388|consen 835 -------------MEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFN 901 (1185)
T ss_pred -------------HHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHh
Confidence 112346899999999999985432110 0000000 00
Q ss_pred ---H-------HhhhcCCC---c------ccc-CCCCC------------------------------------------
Q 044036 485 ---L-------ASAVFGPD---I------DLV-GGNAQ------------------------------------------ 502 (875)
Q Consensus 485 ---~-------~~~~~~~~---~------~~~-~~~~~------------------------------------------ 502 (875)
+ ...+-+.. + +.. |+...
T Consensus 902 iye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~ 981 (1185)
T KOG0388|consen 902 IYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYC 981 (1185)
T ss_pred HHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheee
Confidence 0 00000000 0 000 00000
Q ss_pred -------Ccc-ccCCC-------------------------CcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHH
Q 044036 503 -------NES-FIGLS-------------------------DVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE 549 (875)
Q Consensus 503 -------~~~-~~~~~-------------------------~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~ 549 (875)
... +.+.. -+..|||+..|.+||.++.+.||+||+|.|+++|+|+|+
T Consensus 982 y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~E 1061 (1185)
T KOG0388|consen 982 YSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIE 1061 (1185)
T ss_pred eccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHH
Confidence 000 00000 023489999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccC
Q 044036 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFG 629 (875)
Q Consensus 550 ~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiG 629 (875)
++|..+||+|.|+||+....+|..+|.+|+. +.+||||+||+|||.|||||+||+|||||.+|||..+.||++||||+|
T Consensus 1062 dYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLG 1140 (1185)
T KOG0388|consen 1062 DYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLG 1140 (1185)
T ss_pred HHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhcc
Confidence 9999999999999999999999999999999 688999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCc
Q 044036 630 QKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK 667 (875)
Q Consensus 630 Q~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~ 667 (875)
|+++|+||||++.|||||+|..++.+|.+...+|+.|.
T Consensus 1141 QTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1141 QTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred CccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999885
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=8.3e-87 Score=803.83 Aligned_cols=505 Identities=34% Similarity=0.536 Sum_probs=420.3
Q ss_pred ccCCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEc
Q 044036 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIIC 206 (875)
Q Consensus 127 ~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~ 206 (875)
...|..|...|+|||++|++||+.++.++.|||||||||||||+|+|+++.++... ....+|+||||
T Consensus 160 ~~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~-------------~~~~gp~LIVv 226 (1033)
T PLN03142 160 LVQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEY-------------RGITGPHMVVA 226 (1033)
T ss_pred ccCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHh-------------cCCCCCEEEEe
Confidence 45788888999999999999999999999999999999999999999999887532 23568999999
Q ss_pred CcchHHHHHHHHHHhcC-CcEEEEeCCChhHHH---HHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCc
Q 044036 207 PSSVIQNWEIEFSRWST-FNVSIYHGPNRDMIL---EKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNE 282 (875)
Q Consensus 207 P~sLl~qW~~E~~k~~~-~~v~v~~G~~r~~~~---~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~ 282 (875)
|++++.||.+||.+|+| +++++++|....... ..+..+.++|+||||+++..+...|..+.|++|||||||+|||.
T Consensus 227 P~SlL~nW~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~ 306 (1033)
T PLN03142 227 PKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNE 306 (1033)
T ss_pred ChHHHHHHHHHHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCH
Confidence 99999999999999999 889999998654322 22334678999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHH
Q 044036 283 KSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362 (875)
Q Consensus 283 ~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L 362 (875)
.|+++++++.+.+.+||+|||||+||++.|||+|++||.|+.|++...|..+|..+...+ .......|
T Consensus 307 ~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~------------~~e~i~~L 374 (1033)
T PLN03142 307 NSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEND------------QQEVVQQL 374 (1033)
T ss_pred HHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccc------------hHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997632211 13346789
Q ss_pred HHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCC
Q 044036 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDG 442 (875)
Q Consensus 363 ~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (875)
+.++.+|++||+|.++... +|++.+.+++|.||+.|+.+|+.++.... . .++..
T Consensus 375 ~~~L~pf~LRR~KsdV~~~-LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~-~-~l~~g----------------------- 428 (1033)
T PLN03142 375 HKVLRPFLLRRLKSDVEKG-LPPKKETILKVGMSQMQKQYYKALLQKDL-D-VVNAG----------------------- 428 (1033)
T ss_pred HHHhhHHHhhhhHHHHhhh-CCCceeEEEeeCCCHHHHHHHHHHHHHHH-H-HHhcc-----------------------
Confidence 9999999999999988765 57899999999999999999999876321 1 11100
Q ss_pred CCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHH
Q 044036 443 CDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALE 522 (875)
Q Consensus 443 ~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~ 522 (875)
.....++..++.|+++|+||+++........ ...+......|+|+.+|.
T Consensus 429 ---~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~----------------------------~~~~e~lie~SgKl~lLd 477 (1033)
T PLN03142 429 ---GERKRLLNIAMQLRKCCNHPYLFQGAEPGPP----------------------------YTTGEHLVENSGKMVLLD 477 (1033)
T ss_pred ---ccHHHHHHHHHHHHHHhCCHHhhhcccccCc----------------------------ccchhHHhhhhhHHHHHH
Confidence 0112457788999999999999753211100 000111245689999999
Q ss_pred HHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCC-ceEEEEecCCcccccCCC
Q 044036 523 KLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPS-KQVFLISTRAGGLGLNLV 601 (875)
Q Consensus 523 ~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~-~~v~LiSt~agg~GLNL~ 601 (875)
++|..+...|+||||||+|+.++++|+.+|...|+.|++|||+++..+|+++|++||++++ .+|||+||+|||+||||+
T Consensus 478 kLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt 557 (1033)
T PLN03142 478 KLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLA 557 (1033)
T ss_pred HHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchh
Confidence 9999999999999999999999999999999999999999999999999999999998654 478999999999999999
Q ss_pred CCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccchh
Q 044036 602 SANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFEGVQDCKE 681 (875)
Q Consensus 602 ~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~~~~r~f~~v~~~~~ 681 (875)
.||+||+||++|||+.+.||+||+|||||+++|.||||+++|||||+|++++..|..|...+++++....- ..+ .++
T Consensus 558 ~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~-~~~--~~~ 634 (1033)
T PLN03142 558 TADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQ-KTV--NKD 634 (1033)
T ss_pred hCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCccccc-ccC--CHH
Confidence 99999999999999999999999999999999999999999999999999999999999999975421100 111 111
Q ss_pred hhhcc--cccchhhhhcccccccHHHHHHHHhhccccc
Q 044036 682 FQGEL--FGICNLFRDLSDNLFTSEIIESHEEQGQQQE 717 (875)
Q Consensus 682 ~~gel--fg~~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 717 (875)
.--++ ||...+|... +..++++.|+.+..+++..+
T Consensus 635 eL~~ll~~ga~~~f~~~-~~~~~~~did~il~~~~~~~ 671 (1033)
T PLN03142 635 ELLQMVRYGAEMVFSSK-DSTITDEDIDRIIAKGEEAT 671 (1033)
T ss_pred HHHHHHHhChHHhhhcc-CCCCCHHHHHHHHHhcHHHH
Confidence 11112 6788888643 45567777777776665544
No 9
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.2e-82 Score=713.62 Aligned_cols=522 Identities=33% Similarity=0.523 Sum_probs=420.9
Q ss_pred ccccCCCCC--CCcccCCchhhhcccHHHHHHHHHHHHHh---------hCCCCcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 115 PLVLSKDGE--YPIIQVPASINCRLLEHQREGVKFLYKLY---------KNKHGGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 115 ~~~l~~~~~--~~~~~vP~~i~~~L~pyQ~~gv~~l~~~~---------~~~~ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
.++|..+.+ -+.++||..|-..|+|||..||+|||.+. ..|.|||||+.||||||+|+|+|+..++-..
T Consensus 645 ~lVld~deet~e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~ 724 (1567)
T KOG1015|consen 645 KLVLDEDEETKEPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCD 724 (1567)
T ss_pred eEEecchhhhccchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhh
Confidence 455555443 36789999999999999999999999875 3578999999999999999999999876432
Q ss_pred CCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcC-C----cEEEE--eC----CChhHHHHHHHhCCceEEEee
Q 044036 184 ESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-F----NVSIY--HG----PNRDMILEKLEACGVEVLITS 252 (875)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~-~----~v~v~--~G----~~r~~~~~~~~~~~~~VvItT 252 (875)
....+++|||||.+++.||.+||.+|.+ + .+-|+ .. ..|...+..|...+ .|+|+.
T Consensus 725 ------------klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~g-gVmIiG 791 (1567)
T KOG1015|consen 725 ------------KLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDG-GVMIIG 791 (1567)
T ss_pred ------------ccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcC-CEEEEe
Confidence 2467889999999999999999999976 2 22232 21 23445566666655 799999
Q ss_pred ccccccc---------------ccccccccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHH
Q 044036 253 FDSYRIH---------------GSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLF 317 (875)
Q Consensus 253 y~~l~~~---------------~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll 317 (875)
|++|++. ...|..-.+|+||+||||.|||..|.+++|+..+.+.+||+|||||+|||+.|+++|+
T Consensus 792 YdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMV 871 (1567)
T KOG1015|consen 792 YDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMV 871 (1567)
T ss_pred hHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHH
Confidence 9999853 1245556899999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCH
Q 044036 318 DWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSD 397 (875)
Q Consensus 318 ~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~ 397 (875)
+|+.|+++|+..+|...|.+||.+|+..+++.....++.++.+.|..+|..|+-|+--. |+...+|||+++|+++.||+
T Consensus 872 nFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~-Vltk~LPPK~eyVi~vrlte 950 (1567)
T KOG1015|consen 872 NFVKENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYT-VLTKFLPPKHEYVIAVRLTE 950 (1567)
T ss_pred HhcccccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhcccCCCceeEEEEEeccH
Confidence 99999999999999999999999999999999999999999999999999999998887 78888899999999999999
Q ss_pred HHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCch
Q 044036 398 LQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPD 477 (875)
Q Consensus 398 ~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~ 477 (875)
.|..+|+.+++... . . |. +..| ....-..+|+.+..|.+|-+||..+..+..+...
T Consensus 951 lQ~~LYq~yL~h~~-~----~------G~------------d~eg-~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~en 1006 (1567)
T KOG1015|consen 951 LQCKLYQYYLDHLT-G----V------GN------------DSEG-GRGAGARLFQDFQMLSRIWTHPWCLQLDSISKEN 1006 (1567)
T ss_pred HHHHHHHHHHhhcc-c----c------CC------------cccc-ccchhhhHHHHHHHHHHHhcCCCceeechhhhhh
Confidence 99999999987210 0 0 00 0000 0112235788899999999999876543221100
Q ss_pred hhhh-------------------------------------hHHHHhh-----------------hcC-CCccccCCCC-
Q 044036 478 KQRK-------------------------------------DAELASA-----------------VFG-PDIDLVGGNA- 501 (875)
Q Consensus 478 ~~~~-------------------------------------~~e~~~~-----------------~~~-~~~~~~~~~~- 501 (875)
+..- +...... .++ .+.+..++..
T Consensus 1007 kR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D 1086 (1567)
T KOG1015|consen 1007 KRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPD 1086 (1567)
T ss_pred cccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcc
Confidence 0000 0000000 000 0000000000
Q ss_pred -------------------CCccc------cCCCCcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH--
Q 044036 502 -------------------QNESF------IGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR-- 554 (875)
Q Consensus 502 -------------------~~~~~------~~~~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~-- 554 (875)
..+++ .+......|+||-+|.+||+...+-|+|+|||||+...||+|+.+|..
T Consensus 1087 ~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~ 1166 (1567)
T KOG1015|consen 1087 VSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVS 1166 (1567)
T ss_pred hHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhc
Confidence 00001 112334569999999999999999999999999999999999999963
Q ss_pred --------------------cCCcEEEEeCCCCHHHHHHHHHHhcCCCCc--eEEEEecCCcccccCCCCCCEEEEcCCC
Q 044036 555 --------------------KGYSFSRLDGSTPSNLRQSLVDDFNSSPSK--QVFLISTRAGGLGLNLVSANRVVIFDPN 612 (875)
Q Consensus 555 --------------------~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~--~v~LiSt~agg~GLNL~~An~VI~~D~~ 612 (875)
.|..|.+|||++...+|+++.+.||+..+. +.|||||+||+.||||.+||+|||||..
T Consensus 1167 r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDas 1246 (1567)
T KOG1015|consen 1167 REGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDAS 1246 (1567)
T ss_pred ccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecc
Confidence 377999999999999999999999998775 4699999999999999999999999999
Q ss_pred CCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Q 044036 613 WNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEKRYFE 674 (875)
Q Consensus 613 WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~~~~r~f~ 674 (875)
|||+++.|+|-|+||+||++||+||||++.||+||+||.||+.|+.++..||+...-.|-|.
T Consensus 1247 WNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~Rhy~ 1308 (1567)
T KOG1015|consen 1247 WNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVERHYT 1308 (1567)
T ss_pred cCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998655555443
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-80 Score=717.79 Aligned_cols=499 Identities=35% Similarity=0.523 Sum_probs=413.0
Q ss_pred CCccccCCCCCC-CcccCCchhhhcccHHHHHHHHHHHHHhh------CCCCcEEecCCCCchHHHHHHHHHHHhcCCCC
Q 044036 113 FEPLVLSKDGEY-PIIQVPASINCRLLEHQREGVKFLYKLYK------NKHGGILGDDMGLGKTIQTIAFLAAVFGKDES 185 (875)
Q Consensus 113 ~~~~~l~~~~~~-~~~~vP~~i~~~L~pyQ~~gv~~l~~~~~------~~~ggILaDemGLGKTiqaiall~~l~~~~~~ 185 (875)
+.+++.+++... -.+.+.|.+...|||||++|+.|||++.. ...|||+||+||+|||+|+|+|+..++.+.+.
T Consensus 214 ~~~~~~~k~~~~~v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~ 293 (776)
T KOG0390|consen 214 DSPMVASKDKFSGVHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQ 293 (776)
T ss_pred cccccCCCCcCccceEEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcC
Confidence 344444444432 34667788999999999999999999874 44799999999999999999999999987653
Q ss_pred CcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcC---CcEEEEeCCChhH--HHH-----HHHhCCceEEEeeccc
Q 044036 186 SDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST---FNVSIYHGPNRDM--ILE-----KLEACGVEVLITSFDS 255 (875)
Q Consensus 186 ~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~---~~v~v~~G~~r~~--~~~-----~~~~~~~~VvItTy~~ 255 (875)
.. ....+.|||||++|+.||.+||.+|.. +....++|..++. ... .......-|.|.+|++
T Consensus 294 ~~---------~~~~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~ 364 (776)
T KOG0390|consen 294 AK---------PLINKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYET 364 (776)
T ss_pred cc---------ccccccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHH
Confidence 22 134778999999999999999999976 4555666665541 111 1122234699999999
Q ss_pred ccccccccccccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHh
Q 044036 256 YRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFY 335 (875)
Q Consensus 256 l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~ 335 (875)
++.+...+....+++||+||+|++||..|.+++++.++++++|++|||||+||++.|+|++|+|++|+.+++...|...|
T Consensus 365 ~~~~~~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~ 444 (776)
T KOG0390|consen 365 ASDYCRKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKF 444 (776)
T ss_pred HHHHHHHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHh
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHh
Q 044036 336 DEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCL 415 (875)
Q Consensus 336 ~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l 415 (875)
..|+..++..++.+...+. ..+.+.|..+...|++||+-+ ++...+|++.+++|+|.+|+.|..+|..+++.. +...
T Consensus 445 ~~~i~~~~~~~~s~e~~~~-~~rl~eL~~~t~~fi~rrt~~-il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~ 521 (776)
T KOG0390|consen 445 EIPILRGRDADASEEDRER-EERLQELRELTNKFILRRTGD-ILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRT 521 (776)
T ss_pred hcccccccCCCcchhhhhh-HHHHHHHHHHHHhheeecccc-hhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhh
Confidence 9999999888877776666 666899999999999999985 777888999999999999999999999998753 2211
Q ss_pred hhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCcc
Q 044036 416 INKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDID 495 (875)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 495 (875)
. ....+..+..|.++||||.++......+.+...........
T Consensus 522 ~-------------------------------~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~------- 563 (776)
T KOG0390|consen 522 L-------------------------------KGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLD------- 563 (776)
T ss_pred h-------------------------------hcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhc-------
Confidence 1 11246778999999999999863322222211111111000
Q ss_pred ccCCCCCCccccCCCCcccCchHHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Q 044036 496 LVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWAS-KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSL 574 (875)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~-~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~ 574 (875)
.+. .-....+...|+|+..|..++....+ --.++++-++++.++|+++..+..+|+.++++||+|+..+|+.+
T Consensus 564 --~~~----~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~ 637 (776)
T KOG0390|consen 564 --PGK----LKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKL 637 (776)
T ss_pred --ccc----cccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHH
Confidence 000 00111224457999999999866543 34678888899999999999999999999999999999999999
Q ss_pred HHHhcCCCCc-eEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHH
Q 044036 575 VDDFNSSPSK-QVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQ 653 (875)
Q Consensus 575 i~~F~~~~~~-~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq 653 (875)
|+.||++++. +|||+|++|||+||||++|+|||+|||+|||+.+.|||+||||.||+|+|+||||++.||+||+||+||
T Consensus 638 vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq 717 (776)
T KOG0390|consen 638 VDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQ 717 (776)
T ss_pred HHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHH
Confidence 9999999887 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 044036 654 VYKQQLSNIAVSGK 667 (875)
Q Consensus 654 ~~K~~l~~~~~~g~ 667 (875)
..|+.|..++++..
T Consensus 718 ~~K~~lS~~v~~~~ 731 (776)
T KOG0390|consen 718 THKEGLSSMVFDEE 731 (776)
T ss_pred HHhhhhhheEEecc
Confidence 99999999998754
No 11
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.5e-80 Score=708.54 Aligned_cols=471 Identities=33% Similarity=0.577 Sum_probs=408.0
Q ss_pred ccCCchh-hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEE
Q 044036 127 IQVPASI-NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLII 205 (875)
Q Consensus 127 ~~vP~~i-~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV 205 (875)
...|..+ +.+|++||+.|+.||..+|.++-+||||||||||||+|+|+++.++++.. ...||.|||
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K-------------~~~GP~Lvi 450 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHK-------------QMQGPFLII 450 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHc-------------ccCCCeEEe
Confidence 4456655 57999999999999999999999999999999999999999999998753 468999999
Q ss_pred cCcchHHHHHHHHHHhcC-CcEEEEeCCC--hhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCc
Q 044036 206 CPSSVIQNWEIEFSRWST-FNVSIYHGPN--RDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNE 282 (875)
Q Consensus 206 ~P~sLl~qW~~E~~k~~~-~~v~v~~G~~--r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~ 282 (875)
+|.+++.||..||.+|.| +..++|.|.. |..+......+.|+|++|||+-+..+...|.++.|.++||||+|+|||.
T Consensus 451 vPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa 530 (1157)
T KOG0386|consen 451 VPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNA 530 (1157)
T ss_pred ccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccch
Confidence 999999999999999999 8888999974 5566666777899999999999999999999999999999999999999
Q ss_pred ccHHHHHHH-hccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCC-CCCchhHHHHHHHHHHH
Q 044036 283 KSKLYMACL-ELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQ-RLTAPERFIRIADERKQ 360 (875)
Q Consensus 283 ~S~~~kal~-~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~-~~~~~~~~~~~~~~~~~ 360 (875)
.++++..+. ...+.+|++|||||+||++.|||+||+|+-|..|.+...|..||..|+..-. ....++...- -...
T Consensus 531 ~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtl---LIIr 607 (1157)
T KOG0386|consen 531 ICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETL---LIIR 607 (1157)
T ss_pred hhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHH---HHHH
Confidence 999999998 6799999999999999999999999999999999999999999999997543 2333332222 2356
Q ss_pred HHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCC
Q 044036 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNL 440 (875)
Q Consensus 361 ~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (875)
+||++|+||+|||.|++|...+ |.|.+.++-|.||..|+.+|..+.+....- .. +
T Consensus 608 RLHkVLRPFlLRRlKkeVE~~L-PdKve~viKC~mSalQq~lY~~m~~~g~l~---~d------~--------------- 662 (1157)
T KOG0386|consen 608 RLHKVLRPFLLRRLKKEVEQEL-PDKVEDVIKCDMSALQQSLYKQMQNKGQLL---KD------T--------------- 662 (1157)
T ss_pred HHHHhhhHHHHHhhhHHHhhhC-chhhhHhhheehhhhhHhhhHHHHhCCCCC---cC------c---------------
Confidence 7999999999999999887665 699999999999999999999987632100 00 0
Q ss_pred CCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHH
Q 044036 441 DGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRA 520 (875)
Q Consensus 441 ~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~ 520 (875)
.........+++.++.||++||||+++..-.... .. .+.....+..|||++.
T Consensus 663 -~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~---------------~~------------~~~~~dL~R~sGKfEL 714 (1157)
T KOG0386|consen 663 -AKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSY---------------TL------------HYDIKDLVRVSGKFEL 714 (1157)
T ss_pred -hhccccchhhhhHhHHHHHhcCCchhhhhhcccc---------------cc------------ccChhHHHHhccHHHH
Confidence 0011123457888999999999999983211000 00 0000122567899999
Q ss_pred HHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCc-eEEEEecCCcccccC
Q 044036 521 LEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSK-QVFLISTRAGGLGLN 599 (875)
Q Consensus 521 L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~-~v~LiSt~agg~GLN 599 (875)
|..+|.++.+.||+||.|+++++++++++.+|...+|.|.|+||+|+.++|..+++.||.+++. ++||+||+|||.|||
T Consensus 715 LDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglN 794 (1157)
T KOG0386|consen 715 LDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLN 794 (1157)
T ss_pred HHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998775 789999999999999
Q ss_pred CCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcC
Q 044036 600 LVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSG 666 (875)
Q Consensus 600 L~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g 666 (875)
||.|++||+||++|||..+.||.+|+|||||+++|.|+||++.+++||.|++++.+|..+...++..
T Consensus 795 lQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqa 861 (1157)
T KOG0386|consen 795 LQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQA 861 (1157)
T ss_pred hhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998888763
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-74 Score=612.43 Aligned_cols=498 Identities=30% Similarity=0.448 Sum_probs=390.2
Q ss_pred CcccCCchhhhcccHHHHHHHHHHHHHhh-CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEE
Q 044036 125 PIIQVPASINCRLLEHQREGVKFLYKLYK-NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVL 203 (875)
Q Consensus 125 ~~~~vP~~i~~~L~pyQ~~gv~~l~~~~~-~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~L 203 (875)
....+|..+-..|.|||++|+.|+..+.. .-.|||||||||+|||+|+|+++.+- ....|+|
T Consensus 173 e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae-----------------~~ra~tL 235 (791)
T KOG1002|consen 173 ERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE-----------------VDRAPTL 235 (791)
T ss_pred hcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc-----------------cccCCee
Confidence 44678999999999999999999998877 56899999999999999999999863 2466799
Q ss_pred EEcCcchHHHHHHHHHHhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeecccccc-----------------cccccc
Q 044036 204 IICPSSVIQNWEIEFSRWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRI-----------------HGSILS 264 (875)
Q Consensus 204 IV~P~sLl~qW~~E~~k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~-----------------~~~~l~ 264 (875)
||||...+.||.+|+.+++. .++++|||..|+...+.+. +|+||+|||..+.. ....|.
T Consensus 236 VvaP~VAlmQW~nEI~~~T~gslkv~~YhG~~R~~nikel~--~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLH 313 (791)
T KOG1002|consen 236 VVAPTVALMQWKNEIERHTSGSLKVYIYHGAKRDKNIKELM--NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLH 313 (791)
T ss_pred EEccHHHHHHHHHHHHHhccCceEEEEEecccccCCHHHhh--cCcEEEEecHHHHHHHHhccccccccCCcccccchhh
Confidence 99999999999999999976 8999999999988777664 68999999987642 234678
Q ss_pred cccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCH----------------
Q 044036 265 EVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTR---------------- 328 (875)
Q Consensus 265 ~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~---------------- 328 (875)
.++|-.||+||||.||+..|.+.+|+..|.+.+||+|||||+||++.|||+|+.||+..+|..+
T Consensus 314 si~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftd 393 (791)
T KOG1002|consen 314 SIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTD 393 (791)
T ss_pred hceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecc
Confidence 8999999999999999999999999999999999999999999999999999999998877321
Q ss_pred ---------------HHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhcc-CCCceeEEEE
Q 044036 329 ---------------EHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHL-MMGKEDNVVF 392 (875)
Q Consensus 329 ---------------~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~-lp~k~e~vv~ 392 (875)
-.|......||..-.... .+.......+.+++..|+||||-+-.+++ +||....+--
T Consensus 394 r~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eG-------pGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRr 466 (791)
T KOG1002|consen 394 RMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEG-------PGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRR 466 (791)
T ss_pred cccCCcccchhhhhhhhhcccccccchhhcccC-------chHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeeh
Confidence 112222334443221111 12333456788999999999997655554 5665555555
Q ss_pred ecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCC
Q 044036 393 CTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNP 472 (875)
Q Consensus 393 ~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~ 472 (875)
-.++..+..+|+.+....+... + .. -..|.--..+..+|..+++|||++.||+|+....
T Consensus 467 D~fn~eE~D~YeSLY~dSkrkf--n-----------ty--------ieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~ 525 (791)
T KOG1002|consen 467 DFFNEEEKDLYESLYKDSKRKF--N-----------TY--------IEEGVVLNNYANIFTLITRMRQAADHPDLVLYSA 525 (791)
T ss_pred hhhhhHHHHHHHHHHHhhHHhh--h-----------hH--------HhhhhhhhhHHHHHHHHHHHHHhccCcceeeehh
Confidence 5678889999988765221100 0 00 0112222345678999999999999999975421
Q ss_pred C----CC------------chhhhhhHH----HHhh-------hcCCC-------------ccccCCCCC----------
Q 044036 473 R----DE------------PDKQRKDAE----LASA-------VFGPD-------------IDLVGGNAQ---------- 502 (875)
Q Consensus 473 ~----~~------------~~~~~~~~e----~~~~-------~~~~~-------------~~~~~~~~~---------- 502 (875)
. ++ +.++.-... ++.. .|... .++......
T Consensus 526 ~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~s 605 (791)
T KOG1002|consen 526 NANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKAS 605 (791)
T ss_pred hcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhH
Confidence 1 10 000000000 0000 11111 011100000
Q ss_pred -CccccCCCCcccCchHHHHHHHHHHhhcCC--CeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhc
Q 044036 503 -NESFIGLSDVKSCGKMRALEKLMYSWASKG--DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFN 579 (875)
Q Consensus 503 -~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~g--~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~ 579 (875)
.-+-+++++...|.|+++|.+-|..+.++. -|.||||||++|||+|.-.|...|+.++.+.|+|++..|.+.|+.|.
T Consensus 606 SIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~ 685 (791)
T KOG1002|consen 606 SILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFK 685 (791)
T ss_pred HHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhc
Confidence 012356778889999999999999887544 58899999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHH
Q 044036 580 SSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQL 659 (875)
Q Consensus 580 ~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l 659 (875)
+++++.|||+|.+|||+.|||+.|++|+++||||||+...||++|+|||||.|+|.|.||+.++||||+|.+.|..|.++
T Consensus 686 nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~m 765 (791)
T KOG1002|consen 686 NDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANM 765 (791)
T ss_pred cCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcch
Q 044036 660 SNIAVSGKLE 669 (875)
Q Consensus 660 ~~~~~~g~~~ 669 (875)
+...++++.+
T Consensus 766 ihaTi~qde~ 775 (791)
T KOG1002|consen 766 IHATIGQDEE 775 (791)
T ss_pred hhhhcCCcHH
Confidence 9999887644
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.1e-72 Score=619.02 Aligned_cols=520 Identities=27% Similarity=0.464 Sum_probs=396.4
Q ss_pred CCCcccCCchhhhcccHHHHHHHHHHHHHhh-CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCc
Q 044036 123 EYPIIQVPASINCRLLEHQREGVKFLYKLYK-NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGY 201 (875)
Q Consensus 123 ~~~~~~vP~~i~~~L~pyQ~~gv~~l~~~~~-~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (875)
+.....-|.++...|.|||+.|+.||..... .+.||||||+||||||++.|+++.+-...... +..+.....+
T Consensus 312 et~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~------~~~~~~~a~~ 385 (901)
T KOG4439|consen 312 ETDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKA------REKKGESASK 385 (901)
T ss_pred cccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHh------hcccccccCC
Confidence 3445667889999999999999999987664 45799999999999999999999865322111 1111223336
Q ss_pred EEEEcCcchHHHHHHHHHHhcC---CcEEEEeCCCh-hHHHHHHHhCCceEEEeecccccc----------ccccccccc
Q 044036 202 VLIICPSSVIQNWEIEFSRWST---FNVSIYHGPNR-DMILEKLEACGVEVLITSFDSYRI----------HGSILSEVN 267 (875)
Q Consensus 202 ~LIV~P~sLl~qW~~E~~k~~~---~~v~v~~G~~r-~~~~~~~~~~~~~VvItTy~~l~~----------~~~~l~~~~ 267 (875)
+|||||++|+.||..|+.+-.. +.|++|||+++ +-....+ ..||||||||..+.. ....|..+.
T Consensus 386 TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L--~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~ 463 (901)
T KOG4439|consen 386 TLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKREISAKEL--RKYDVVITTYNLVANKPDDELEEGKNSSPLARIA 463 (901)
T ss_pred eEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccccCCHHHH--hhcceEEEeeeccccCCchhhhcccCccHHHHhh
Confidence 9999999999999999998765 89999999984 3333333 368999999998876 234678899
Q ss_pred ccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCc
Q 044036 268 WEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTA 347 (875)
Q Consensus 268 w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~ 347 (875)
|.+||+||||.|||++++...|++.|.+.+||+||||||||+.-|+|+|+.||+..+|++...|++++..+-..|.
T Consensus 464 W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~---- 539 (901)
T KOG4439|consen 464 WSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGA---- 539 (901)
T ss_pred HHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccch----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987655442
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhc----cCCCceeEEEEecCCHHHHHHHHHHhcchhH--HH-hhhccC
Q 044036 348 PERFIRIADERKQHLVAVLRKYLLRRTKEETIGH----LMMGKEDNVVFCTMSDLQKRAYRRLLQLPEI--QC-LINKDL 420 (875)
Q Consensus 348 ~~~~~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~----~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~--~~-l~~~~~ 420 (875)
.++.=+.++.||||||+..-+. .+|.+.-.+.-+.|+..+...|+-+.+...- .. +.+...
T Consensus 540 ------------~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~ 607 (901)
T KOG4439|consen 540 ------------NRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQRED 607 (901)
T ss_pred ------------hhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455577899999999876552 3578888899999999999999988764331 11 211111
Q ss_pred CCCCCCC--ch-----------hHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCC----------ch
Q 044036 421 PCSCGSP--LT-----------QVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDE----------PD 477 (875)
Q Consensus 421 ~~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~----------~~ 477 (875)
....+.. .. ..+.-.+. ...+........++..+.+|||+|.|+.++......+ .+
T Consensus 608 ~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~-~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde 686 (901)
T KOG4439|consen 608 RNNDGGYQSRNRFIGGHDEFGNYYNIGPRF-LAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDE 686 (901)
T ss_pred hccccCccccchhccccccccccccccchh-hhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhh
Confidence 1111110 00 00000011 0011111122338899999999999997765432211 11
Q ss_pred hhhhhHHHHh--hhcC-----CCccccCCCCCCccccCCCCcccCchHHHHHHHHHHh-hcCCCeEEEEecchhHHHHHH
Q 044036 478 KQRKDAELAS--AVFG-----PDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSW-ASKGDKILLFSYSVRMLDILE 549 (875)
Q Consensus 478 ~~~~~~e~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~-~~~g~KVLIFs~~~~~ld~L~ 549 (875)
.+.+...++. .... ++.+.......... ......|.|+..+...++.+ ....+|++|-|||+.+|+++.
T Consensus 687 ~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~---Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~ 763 (901)
T KOG4439|consen 687 EQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQA---FEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVR 763 (901)
T ss_pred hhhhhhHHHhhhhcccccccccccccccccchhhh---cccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHH
Confidence 1111111110 0000 00000000001111 22244678999999999887 567899999999999999999
Q ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCC-ceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhccccc
Q 044036 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPS-KQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRF 628 (875)
Q Consensus 550 ~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~-~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~Ri 628 (875)
..+...|..|..++|.....+|+.+|+.||.... .+|+|+|..|||+||||++|||+|++|.+|||+.+.||.+|+||+
T Consensus 764 ~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~ 843 (901)
T KOG4439|consen 764 KHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRM 843 (901)
T ss_pred HHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999997665 689999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCcchh
Q 044036 629 GQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEK 670 (875)
Q Consensus 629 GQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~~~~ 670 (875)
||+++|+||||++.||+|++|...|..|..++..|++|...+
T Consensus 844 GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr 885 (901)
T KOG4439|consen 844 GQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATR 885 (901)
T ss_pred cccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCcccc
Confidence 999999999999999999999999999999999999987553
No 14
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=9.4e-70 Score=599.13 Aligned_cols=508 Identities=32% Similarity=0.534 Sum_probs=397.1
Q ss_pred CCCCCCcccCCchhhhcccHHHHHHHHHHHHHh---------hCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchh
Q 044036 120 KDGEYPIIQVPASINCRLLEHQREGVKFLYKLY---------KNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTI 190 (875)
Q Consensus 120 ~~~~~~~~~vP~~i~~~L~pyQ~~gv~~l~~~~---------~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~ 190 (875)
.+.+.+.+.+-+.|...|+|||+-||+||+... ..|.|||||+.||||||+|+|+|+..++..+
T Consensus 238 HPeeee~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT------- 310 (1387)
T KOG1016|consen 238 HPEEEEDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHT------- 310 (1387)
T ss_pred CCCCCcceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcC-------
Confidence 445556688889999999999999999999765 2467999999999999999999999887543
Q ss_pred hcccccCCCCcEEEEcCcchHHHHHHHHHHhcC------------CcEEEEeCCC-----hhHHHHHHHhCCceEEEeec
Q 044036 191 LKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST------------FNVSIYHGPN-----RDMILEKLEACGVEVLITSF 253 (875)
Q Consensus 191 ~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~------------~~v~v~~G~~-----r~~~~~~~~~~~~~VvItTy 253 (875)
..+.+|+|+|-..++||..||.+|.| |.|.++.... |..+...|...+ .|+++.|
T Consensus 311 -------~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~G-GVlLvGY 382 (1387)
T KOG1016|consen 311 -------KAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTG-GVLLVGY 382 (1387)
T ss_pred -------ccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccC-CEEEehH
Confidence 67889999999999999999999976 3445544332 334444444333 6999999
Q ss_pred cccccc--------------------------------------ccccccccccEEEEcCCccccCcccHHHHHHHhccc
Q 044036 254 DSYRIH--------------------------------------GSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKT 295 (875)
Q Consensus 254 ~~l~~~--------------------------------------~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~ 295 (875)
++|+.. ...|..-.+|+||+||+|+|||..+.++.+++++++
T Consensus 383 emfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~Irt 462 (1387)
T KOG1016|consen 383 EMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRT 462 (1387)
T ss_pred HHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhh
Confidence 998731 112344568999999999999999999999999999
Q ss_pred cceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhch
Q 044036 296 RNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTK 375 (875)
Q Consensus 296 ~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~~~lRR~k 375 (875)
++||.|||-|+|||+-|+|+|++|++|..+|++.+|...|..||++||..+.+...+.++..+.+.|+.+|..|+-||+-
T Consensus 463 rRRiVLTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~H 542 (1387)
T KOG1016|consen 463 RRRIVLTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTH 542 (1387)
T ss_pred ceeEEEeccccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHH
Q 044036 376 EETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCL 455 (875)
Q Consensus 376 ~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 455 (875)
. +++..+|.+.|+|+.+.+|..|+++|+.++-.....+..+. ...-.+ +.++
T Consensus 543 t-vLk~~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~---~~~~NP------------------------LkAF 594 (1387)
T KOG1016|consen 543 T-VLKKILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAANN---DAVFNP------------------------LKAF 594 (1387)
T ss_pred h-hHhhhcccccceEEEEeHHHHHHHHHHHHHHHHHHhhcccc---ccccCh------------------------HHHH
Confidence 8 78888899999999999999999999998742111110000 001122 2333
Q ss_pred HHHHHHhccccccCCCCCC-----CchhhhhhHHHH--hh---hc---CCCc----------------cccCCC------
Q 044036 456 VKLQQISNHLELIKPNPRD-----EPDKQRKDAELA--SA---VF---GPDI----------------DLVGGN------ 500 (875)
Q Consensus 456 ~~Lr~~~nh~~l~~~~~~~-----~~~~~~~~~e~~--~~---~~---~~~~----------------~~~~~~------ 500 (875)
....++-|||..+..-... +.+...+....+ .. -+ +.+. +..+..
T Consensus 595 ~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ 674 (1387)
T KOG1016|consen 595 SVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFD 674 (1387)
T ss_pred HHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcc
Confidence 4445555666554321111 000000000000 00 00 0000 000000
Q ss_pred CCCccccCC-------------CCcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc------------
Q 044036 501 AQNESFIGL-------------SDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRK------------ 555 (875)
Q Consensus 501 ~~~~~~~~~-------------~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~------------ 555 (875)
...+...+. ...+.+.|+-.+.+++..-..-|+|+||||+....||+|+.+|...
T Consensus 675 ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~ 754 (1387)
T KOG1016|consen 675 EEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCP 754 (1387)
T ss_pred cccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCc
Confidence 000001111 1123456666667777766677999999999999999999999753
Q ss_pred ------CCcEEEEeCCCCHHHHHHHHHHhcCCCCce-EEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhccccc
Q 044036 556 ------GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ-VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRF 628 (875)
Q Consensus 556 ------g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~-v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~Ri 628 (875)
...|.++||.++..+|.++|++||+.++.. .||+||++|..|+||.+||++|+||..|||..+.||++|++|+
T Consensus 755 aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrY 834 (1387)
T KOG1016|consen 755 AQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRY 834 (1387)
T ss_pred hhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhh
Confidence 357899999999999999999999998876 7999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCcchh
Q 044036 629 GQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKLEK 670 (875)
Q Consensus 629 GQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~~~~ 670 (875)
||+|+++|||||+.+++|-+||.||+.|+.+.+.+++.-...
T Consensus 835 GQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~ 876 (1387)
T KOG1016|consen 835 GQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPD 876 (1387)
T ss_pred cCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCcc
Confidence 999999999999999999999999999999999999865443
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-63 Score=624.95 Aligned_cols=484 Identities=36% Similarity=0.570 Sum_probs=400.8
Q ss_pred chhhhcccHHHHHHHHHHH-HHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc
Q 044036 131 ASINCRLLEHQREGVKFLY-KLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS 209 (875)
Q Consensus 131 ~~i~~~L~pyQ~~gv~~l~-~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s 209 (875)
..+...|+|||.+|++||. .......||||||+||+|||+|+|+++.+.+... ....+|+|||||.+
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~------------~~~~~~~liv~p~s 400 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESI------------KVYLGPALIVVPAS 400 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcc------------cCCCCCeEEEecHH
Confidence 5677899999999999999 7888899999999999999999999998854332 11268999999999
Q ss_pred hHHHHHHHHHHhcC-Cc-EEEEeCCCh-----hHHHHHHHhC----CceEEEeecccccc---cccccccccccEEEEcC
Q 044036 210 VIQNWEIEFSRWST-FN-VSIYHGPNR-----DMILEKLEAC----GVEVLITSFDSYRI---HGSILSEVNWEIVIVDE 275 (875)
Q Consensus 210 Ll~qW~~E~~k~~~-~~-v~v~~G~~r-----~~~~~~~~~~----~~~VvItTy~~l~~---~~~~l~~~~w~~VIiDE 275 (875)
++.||.+|+.+|.+ ++ +.+++|... ......+... .++|++|||+.+.. +...+..+.|+++|+||
T Consensus 401 ~~~nw~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DE 480 (866)
T COG0553 401 LLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDE 480 (866)
T ss_pred HHHHHHHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhh
Confidence 99999999999998 77 899999874 2333333322 27999999999999 88999999999999999
Q ss_pred CccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHh-hhCCCCCC-CHHHHHHHhcchhccCCCCCchhHHHH
Q 044036 276 AHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFD-WVAPGSLG-TREHFREFYDEPLKHGQRLTAPERFIR 353 (875)
Q Consensus 276 AH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~-~l~p~~~~-~~~~F~~~~~~~i~~g~~~~~~~~~~~ 353 (875)
||+|||..+..+++++.+++.++++|||||++|++.|||++++ |+.|+.++ +...|..+|..|+..+..... ..
T Consensus 481 a~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~----~~ 556 (866)
T COG0553 481 AHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP----LE 556 (866)
T ss_pred HHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc----hh
Confidence 9999999999999999999999999999999999999999999 99999999 559999999999876654332 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhH--HhhccCCCceeEEEEecCCHHHHHHHHHHhcch-----hHHHhhhccCCCCCCC
Q 044036 354 IADERKQHLVAVLRKYLLRRTKEE--TIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLP-----EIQCLINKDLPCSCGS 426 (875)
Q Consensus 354 ~~~~~~~~L~~~L~~~~lRR~k~~--vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~-----~~~~l~~~~~~~~~~~ 426 (875)
........|+.++.+|++||++.+ ++. .+|++.+.+++|.+++.|+.+|..++... .+.........+
T Consensus 557 ~~~~~~~~l~~~i~~f~lrr~k~~~~v~~-~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~---- 631 (866)
T COG0553 557 ARELGIELLRKLLSPFILRRTKEDVEVLK-ELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDE---- 631 (866)
T ss_pred hHHHHHHHHHHHHHHHhhcccccchhHHH-hCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----
Confidence 122334458899999999999999 554 45799999999999999999999988732 111111111000
Q ss_pred CchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCC-CCCchhhhhhHHHHhhhcCCCccccCCCCCCcc
Q 044036 427 PLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNP-RDEPDKQRKDAELASAVFGPDIDLVGGNAQNES 505 (875)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 505 (875)
+ ..+. ....++..++.|+++|+||.++.... ...........+ . ....
T Consensus 632 ----------~--~~~~---~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~---------------~-~~~~ 680 (866)
T COG0553 632 ----------N--RIGD---SELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLRE---------------D-KDFD 680 (866)
T ss_pred ----------c--cccc---hhhHHHHHHHHHHHhccCccccccccccccchhhhhhhc---------------c-cccc
Confidence 0 0000 23467888999999999999987652 111000000000 0 1111
Q ss_pred ccCCCCcccC-chHHHHHHHH-HHhhcCCC--eEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCC
Q 044036 506 FIGLSDVKSC-GKMRALEKLM-YSWASKGD--KILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSS 581 (875)
Q Consensus 506 ~~~~~~~~~s-~Kl~~L~~LL-~~~~~~g~--KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~ 581 (875)
+........| +|+..+.++| ..+..+|+ |||||++++.++++|+.+|...++.++++||+++..+|+.+|++|+++
T Consensus 681 ~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~ 760 (866)
T COG0553 681 YLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD 760 (866)
T ss_pred cccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC
Confidence 1222335667 9999999999 78889999 999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHH
Q 044036 582 PSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSN 661 (875)
Q Consensus 582 ~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~ 661 (875)
+...|||+|++|||.||||+.|++||+||++|||+.+.||++|+||+||+++|.||||++.||+||+|..+|..|+.+..
T Consensus 761 ~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~ 840 (866)
T COG0553 761 EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLD 840 (866)
T ss_pred CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q 044036 662 IAVSG 666 (875)
Q Consensus 662 ~~~~g 666 (875)
.++++
T Consensus 841 ~~~~~ 845 (866)
T COG0553 841 SLIDA 845 (866)
T ss_pred HHhhh
Confidence 99886
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-57 Score=483.18 Aligned_cols=428 Identities=26% Similarity=0.359 Sum_probs=336.3
Q ss_pred CCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc
Q 044036 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS 208 (875)
Q Consensus 129 vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 208 (875)
.|+.+-..|.|||++||.|.++ .|+.+|||||||||||+|||+++.++. ..+|.|||||+
T Consensus 191 ~d~kLvs~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyr-----------------aEwplliVcPA 250 (689)
T KOG1000|consen 191 MDPKLVSRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYR-----------------AEWPLLIVCPA 250 (689)
T ss_pred cCHHHHHhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHh-----------------hcCcEEEEecH
Confidence 3788889999999999999887 466779999999999999999988764 57899999999
Q ss_pred chHHHHHHHHHHhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHH
Q 044036 209 SVIQNWEIEFSRWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKL 286 (875)
Q Consensus 209 sLl~qW~~E~~k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~ 286 (875)
++...|.+++.+|.| ..+.+..+....- ..+-. -..|.|+||+++......|...+|.+||+||+|.+|+..+++
T Consensus 251 svrftWa~al~r~lps~~pi~vv~~~~D~~--~~~~t-~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr 327 (689)
T KOG1000|consen 251 SVRFTWAKALNRFLPSIHPIFVVDKSSDPL--PDVCT-SNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKR 327 (689)
T ss_pred HHhHHHHHHHHHhcccccceEEEecccCCc--ccccc-CCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhh
Confidence 999999999999998 3444444432211 00001 126999999999999999999899999999999999999999
Q ss_pred HHHHHhc--cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHH
Q 044036 287 YMACLEL--KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364 (875)
Q Consensus 287 ~kal~~l--~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~ 364 (875)
.+++.-+ .+.+.|+|||||--.++.|||.++..+++..|.+..+|-..|++.-.-+...+.. +-.+..+|+-
T Consensus 328 ~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dyk------g~tnl~EL~~ 401 (689)
T KOG1000|consen 328 TKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYK------GCTNLEELAA 401 (689)
T ss_pred hhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecC------CCCCHHHHHH
Confidence 9998887 7889999999999999999999999999999999999999999865544433322 1234566777
Q ss_pred HHH-HHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCC
Q 044036 365 VLR-KYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGC 443 (875)
Q Consensus 365 ~L~-~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (875)
+|. ..|+||+|.+++++++|+..+.++.|.-+ +-..-+.++....- +. ..
T Consensus 402 lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr--~da~~~~lv~~a~~------------~t---~~------------ 452 (689)
T KOG1000|consen 402 LLFKRLMIRRLKADVLKQLPPKRREVVYVSGGR--IDARMDDLVKAAAD------------YT---KV------------ 452 (689)
T ss_pred HHHHHHHHHHHHHHHHhhCCccceEEEEEcCCc--cchHHHHHHHHhhh------------cc---hh------------
Confidence 664 57899999999998876544433333322 22222222210000 00 00
Q ss_pred CCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHH
Q 044036 444 DSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEK 523 (875)
Q Consensus 444 ~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~ 523 (875)
. ...+ +|..++ .+.. ...-.|+....+
T Consensus 453 ---------~---~~e~--~~~~l~---------------l~y~------------------------~tgiaK~~av~e 479 (689)
T KOG1000|consen 453 ---------N---SMER--KHESLL---------------LFYS------------------------LTGIAKAAAVCE 479 (689)
T ss_pred ---------h---hhhh--hhHHHH---------------HHHH------------------------HhcccccHHHHH
Confidence 0 0000 000000 0000 001136666666
Q ss_pred HHHH----hhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccC
Q 044036 524 LMYS----WASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLN 599 (875)
Q Consensus 524 LL~~----~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLN 599 (875)
.|.. ..+.+.|+|||+++..+||-|+..+..+++.+.||||+++..+|+.+++.|+.+....|-++|..|||+||+
T Consensus 480 yi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 480 YILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred HHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 6555 346789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCc
Q 044036 600 LVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK 667 (875)
Q Consensus 600 L~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~ 667 (875)
|++|+.|||.+.+|||...+||.||+||+||+..|.||+|+++||+||.++.....|......+-.|+
T Consensus 560 ~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s 627 (689)
T KOG1000|consen 560 LTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSS 627 (689)
T ss_pred eeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCc
Confidence 99999999999999999999999999999999999999999999999999999999998776654444
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.4e-56 Score=540.32 Aligned_cols=434 Identities=20% Similarity=0.237 Sum_probs=321.6
Q ss_pred hhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchH
Q 044036 132 SINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVI 211 (875)
Q Consensus 132 ~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl 211 (875)
+....|.|||...+.++... ...++|||||||||||++|++++..++.. +..+|+|||||++|+
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~--------------g~~~rvLIVvP~sL~ 211 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLT--------------GRAERVLILVPETLQ 211 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHc--------------CCCCcEEEEcCHHHH
Confidence 34567999999999887654 35678999999999999999999887532 356799999999999
Q ss_pred HHHHHHHHHhcCCcEEEEeCCChhHHHHH--HHhCCceEEEeecccccccc---cccccccccEEEEcCCccccCc---c
Q 044036 212 QNWEIEFSRWSTFNVSIYHGPNRDMILEK--LEACGVEVLITSFDSYRIHG---SILSEVNWEIVIVDEAHRLKNE---K 283 (875)
Q Consensus 212 ~qW~~E~~k~~~~~v~v~~G~~r~~~~~~--~~~~~~~VvItTy~~l~~~~---~~l~~~~w~~VIiDEAH~ikn~---~ 283 (875)
.||..|+.+|+.+.+.++.+..-...... -.-...+++|+||+.++.+. ..+....|++||+||||++++. .
T Consensus 212 ~QW~~El~~kF~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~ 291 (956)
T PRK04914 212 HQWLVEMLRRFNLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAP 291 (956)
T ss_pred HHHHHHHHHHhCCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCc
Confidence 99999999998888888876532211100 00013579999999998754 3456679999999999999953 5
Q ss_pred cHHHHHHHhc--cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcc--hh-------ccCCCCCchhH-H
Q 044036 284 SKLYMACLEL--KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDE--PL-------KHGQRLTAPER-F 351 (875)
Q Consensus 284 S~~~kal~~l--~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~--~i-------~~g~~~~~~~~-~ 351 (875)
|..++++..+ +++++++|||||+||+..|+|++++||+|+.|++...|....+. |+ ..+........ .
T Consensus 292 s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~ 371 (956)
T PRK04914 292 SREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNA 371 (956)
T ss_pred CHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHH
Confidence 6778999888 67899999999999999999999999999999999999865432 21 22222111000 0
Q ss_pred H-HH-H------------------H-HHHHHHHHHH-----HHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHH
Q 044036 352 I-RI-A------------------D-ERKQHLVAVL-----RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRR 405 (875)
Q Consensus 352 ~-~~-~------------------~-~~~~~L~~~L-----~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~ 405 (875)
+ .. . . .+.+.+..++ ..+|+|+++.++.+ +|.+..+.+.+++++.....+..
T Consensus 372 l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~--fp~R~~~~~~l~~~~~y~~~~~~ 449 (956)
T PRK04914 372 LGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKG--FPKRELHPIPLPLPEQYQTAIKV 449 (956)
T ss_pred HHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC--CCcCceeEeecCCCHHHHHHHHH
Confidence 0 00 0 0 0111111222 25678888887643 56787888888887643332221
Q ss_pred HhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHH
Q 044036 406 LLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAEL 485 (875)
Q Consensus 406 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~ 485 (875)
... ..+++ +.+|..+. .++
T Consensus 450 ~~~-----------------------------------------------~~~~~-~l~pe~~~-------------~~~ 468 (956)
T PRK04914 450 SLE-----------------------------------------------ARARD-MLYPEQIY-------------QEF 468 (956)
T ss_pred hHH-----------------------------------------------HHHHh-hcCHHHHH-------------HHH
Confidence 000 00000 00110000 000
Q ss_pred HhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHH-HHcCCcEEEEeC
Q 044036 486 ASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFL-IRKGYSFSRLDG 564 (875)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L-~~~g~~~~~ldG 564 (875)
. .. .......+|+..|.++|+.. .++||||||++..+++.|...| ...|+++..++|
T Consensus 469 ~-----~~---------------~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG 526 (956)
T PRK04914 469 E-----DN---------------ATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHE 526 (956)
T ss_pred h-----hh---------------hhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEEC
Confidence 0 00 00122347999999999875 4889999999999999999999 467999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCC
Q 044036 565 STPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGS 644 (875)
Q Consensus 565 ~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gT 644 (875)
+++..+|+++++.|+++++...+||+|++||+|+||+.|++||+||+||||..++||+||+||+||+++|.||.++.+||
T Consensus 527 ~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t 606 (956)
T PRK04914 527 GMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGT 606 (956)
T ss_pred CCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCC
Confidence 99999999999999986533447889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 044036 645 LEELVYTRQVYKQQLSNIAVSG 666 (875)
Q Consensus 645 iEE~I~~rq~~K~~l~~~~~~g 666 (875)
+|+.|+.....|..+.+..+..
T Consensus 607 ~~e~i~~~~~~~l~ife~~~~~ 628 (956)
T PRK04914 607 AQERLFRWYHEGLNAFEHTCPT 628 (956)
T ss_pred HHHHHHHHHhhhcCceeccCCC
Confidence 9999999999998777766554
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.7e-53 Score=494.86 Aligned_cols=480 Identities=29% Similarity=0.436 Sum_probs=367.8
Q ss_pred HHHHHHHHHHHHHhh-CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHH
Q 044036 139 EHQREGVKFLYKLYK-NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIE 217 (875)
Q Consensus 139 pyQ~~gv~~l~~~~~-~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E 217 (875)
.+|..+-.|+-.... .-.|||+||+||+|||+++|+++......... ..+....+..|||||.+++.||..|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~-------~~~~~~~kttLivcp~s~~~qW~~e 207 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKE-------EDRQKEFKTTLIVCPTSLLTQWKTE 207 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcc-------hhhccccCceeEecchHHHHHHHHH
Confidence 455544444333221 23799999999999999999998865433220 0023356789999999999999999
Q ss_pred HHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhcc
Q 044036 218 FSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELK 294 (875)
Q Consensus 218 ~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~ 294 (875)
+.+... +.+.+||| +..... ....++||+|||.++.. ..+..+.|-++|+||||.++|.+++.++++..+.
T Consensus 208 lek~~~~~~l~v~v~~g--r~kd~~--el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~ 281 (674)
T KOG1001|consen 208 LEKVTEEDKLSIYVYHG--RTKDKS--ELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLD 281 (674)
T ss_pred HhccCCccceEEEEecc--cccccc--hhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeec
Confidence 955543 78899999 222222 23467899999999986 5677799999999999999999999999999999
Q ss_pred ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044036 295 TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRT 374 (875)
Q Consensus 295 ~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~~~lRR~ 374 (875)
+.+||+|||||+||+..|+|+++.|+.-.++.....|...+..|+..+.. .+-...+..+|..+++||+
T Consensus 282 a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-----------~~~~k~l~~~L~~v~lrrt 350 (674)
T KOG1001|consen 282 AKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-----------KEGVKTLQGILKKVMLRRT 350 (674)
T ss_pred cceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-----------HHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999876532 2335668889999999999
Q ss_pred hhHHhh----ccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccc
Q 044036 375 KEETIG----HLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCL 450 (875)
Q Consensus 375 k~~vi~----~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (875)
|...+. ..+|++...+..+.++..++..|..+......+. .++. ..+........
T Consensus 351 K~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~-----------------~~~~----~~~~~~~~Y~~ 409 (674)
T KOG1001|consen 351 KEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQF-----------------SNYA----NEGTVSSTYAF 409 (674)
T ss_pred ccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHH-----------------HHHh----hhchhhhhHHH
Confidence 975442 3468999999999999999999998876422111 0000 01122223456
Q ss_pred hhhHHHHHHHHhccccccCCCCCCCchhhhh---hHHHHhhh---c------CCC-------------------ccccCC
Q 044036 451 VLPCLVKLQQISNHLELIKPNPRDEPDKQRK---DAELASAV---F------GPD-------------------IDLVGG 499 (875)
Q Consensus 451 ~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~---~~e~~~~~---~------~~~-------------------~~~~~~ 499 (875)
++..+.+|+++|+||.++.....+....... ...+...+ + ..+ ++....
T Consensus 410 ~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~ 489 (674)
T KOG1001|consen 410 FLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSEN 489 (674)
T ss_pred HHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccC
Confidence 7788899999999999876543322211111 00111111 0 000 000000
Q ss_pred C------------------CCCccccCCCCcccCchHHHHHHHHHHhhcCCC-eEEEEecchhHHHHHHHHHHHcCCcEE
Q 044036 500 N------------------AQNESFIGLSDVKSCGKMRALEKLMYSWASKGD-KILLFSYSVRMLDILEKFLIRKGYSFS 560 (875)
Q Consensus 500 ~------------------~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~g~-KVLIFs~~~~~ld~L~~~L~~~g~~~~ 560 (875)
. .....+.... ..|.|+..+.++|........ |+|||||++.++++++..|...|+.+.
T Consensus 490 ~~~~~cr~~l~~~~l~s~~~~~~~~~~~~--~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~ 567 (674)
T KOG1001|consen 490 APCPLCRNVLKEKKLLSANPLPSIINDLL--PESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFL 567 (674)
T ss_pred CCCcHHHHHHHHHHHhhcccccchhhhcc--chhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccc
Confidence 0 0000000000 136788888888885544444 999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEe
Q 044036 561 RLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLL 640 (875)
Q Consensus 561 ~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi 640 (875)
+++|.++...|.+.+..|+.++...|+|+|.+||+.||||+.|++|+++||+|||..+.|||+|+||+||+++|.|+||+
T Consensus 568 ~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~ 647 (674)
T KOG1001|consen 568 RYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFI 647 (674)
T ss_pred hhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHhc
Q 044036 641 SAGSLEELVYTRQVYKQQLSNIAVS 665 (875)
Q Consensus 641 ~~gTiEE~I~~rq~~K~~l~~~~~~ 665 (875)
..+|+||+|...|..|+.+...+.+
T Consensus 648 i~dtveer~l~iq~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 648 IKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred hhhccHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999877654
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=2.8e-47 Score=437.28 Aligned_cols=386 Identities=33% Similarity=0.539 Sum_probs=326.1
Q ss_pred cCCchhh---hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEE
Q 044036 128 QVPASIN---CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLI 204 (875)
Q Consensus 128 ~vP~~i~---~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LI 204 (875)
..|..+. ..|.+||.+|++|+...+..+..+|||||||+|||+|++.|+..++... ...+|+|+
T Consensus 284 ~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~-------------~~~~P~Lv 350 (696)
T KOG0383|consen 284 DQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEI-------------HSPGPPLV 350 (696)
T ss_pred cCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeeccccc-------------CCCCCcee
Confidence 3455444 7899999999999999999999999999999999999999999887543 35789999
Q ss_pred EcCcchHHHHHHHHHHhcC-CcEEEEeCCChhHHHHH----------------------HHhCCceEEEeeccccccccc
Q 044036 205 ICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEK----------------------LEACGVEVLITSFDSYRIHGS 261 (875)
Q Consensus 205 V~P~sLl~qW~~E~~k~~~-~~v~v~~G~~r~~~~~~----------------------~~~~~~~VvItTy~~l~~~~~ 261 (875)
++|.+.+.||..|+..|.+ +.+..|+|+.+...... -....+++..++|++...+..
T Consensus 351 ~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~ 430 (696)
T KOG0383|consen 351 VAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQS 430 (696)
T ss_pred eccCccccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHH
Confidence 9999999999999999998 78888988754321111 123457899999999999999
Q ss_pred ccccccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhcc
Q 044036 262 ILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH 341 (875)
Q Consensus 262 ~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~ 341 (875)
.+..+.|.++|+||+|+++|..|.+.+.+......++++|||||.||++.||+++|+|+.|+.|.+..+|.+.|.+...
T Consensus 431 il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~- 509 (696)
T KOG0383|consen 431 ILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISC- 509 (696)
T ss_pred HHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876432
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCC
Q 044036 342 GQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLP 421 (875)
Q Consensus 342 g~~~~~~~~~~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~ 421 (875)
......|+.++.++|+||.+.+++.. +|.|.+.++.+.|++.|+++|+.++... ...+..
T Consensus 510 --------------~~~~~~l~~l~~p~~lrr~k~d~l~~-~P~Kte~i~~~~~~~~Q~~~yk~~~t~n-~~~l~~---- 569 (696)
T KOG0383|consen 510 --------------EEQIKKLHLLLCPHMLRRLKLDVLKP-MPLKTELIGRVELSPCQKKYYKKILTRN-WQGLLA---- 569 (696)
T ss_pred --------------HHHHHhhccccCchhhhhhhhhhccC-CCccceeEEEEecCHHHHHHHHHHHcCC-hHHHhh----
Confidence 44567899999999999999999988 6899999999999999999999987632 111111
Q ss_pred CCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCC
Q 044036 422 CSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNA 501 (875)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 501 (875)
+ .....+++.++.|+++|+||+++...... .. ..+
T Consensus 570 --------------------~---~~~~s~~n~~mel~K~~~hpy~~~~~e~~-~~----~~~----------------- 604 (696)
T KOG0383|consen 570 --------------------G---VHQYSLLNIVMELRKQCNHPYLSPLEEPL-EE----NGE----------------- 604 (696)
T ss_pred --------------------c---chhHHHHHHHHHHHHhhcCcccCcccccc-cc----chH-----------------
Confidence 0 01234678899999999999998761110 00 001
Q ss_pred CCccccCCCCcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCC
Q 044036 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSS 581 (875)
Q Consensus 502 ~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~ 581 (875)
+..-...+.|+|+..|..++++++..||||+||++++.++|+|++++...| .|.++||.....+|+++|++||..
T Consensus 605 ----~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~ 679 (696)
T KOG0383|consen 605 ----YLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAP 679 (696)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCC
Confidence 111112467899999999999999999999999999999999999999999 999999999999999999999965
Q ss_pred C-CceEEEEecCCcccc
Q 044036 582 P-SKQVFLISTRAGGLG 597 (875)
Q Consensus 582 ~-~~~v~LiSt~agg~G 597 (875)
+ +.++||+||+|||.|
T Consensus 680 ~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 680 GSNQFCFLLSTRAGGLG 696 (696)
T ss_pred CccceEEEeecccccCC
Confidence 5 458999999999988
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.3e-41 Score=392.00 Aligned_cols=353 Identities=20% Similarity=0.339 Sum_probs=259.1
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~ 212 (875)
...|||||.+++.+++..- ..++|||..+||+|||+++++++..+ .+++|||||.. ++.
T Consensus 253 ~~~LRpYQ~eAl~~~~~~g-r~r~GIIvLPtGaGKTlvai~aa~~l-------------------~k~tLILvps~~Lv~ 312 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVTAACTV-------------------KKSCLVLCTSAVSVE 312 (732)
T ss_pred CCCcCHHHHHHHHHHHhcC-CCCCcEEEeCCCCChHHHHHHHHHHh-------------------CCCEEEEeCcHHHHH
Confidence 5689999999999986421 12589999999999999999988754 35699999976 599
Q ss_pred HHHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc----------cccccccccEEEEcCCccc
Q 044036 213 NWEIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG----------SILSEVNWEIVIVDEAHRL 279 (875)
Q Consensus 213 qW~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~----------~~l~~~~w~~VIiDEAH~i 279 (875)
||.+||.+|+. ..+..++|..+... .....|+|+||+++.... ..+....|++||+||||++
T Consensus 313 QW~~ef~~~~~l~~~~I~~~tg~~k~~~-----~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~l 387 (732)
T TIGR00603 313 QWKQQFKMWSTIDDSQICRFTSDAKERF-----HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVV 387 (732)
T ss_pred HHHHHHHHhcCCCCceEEEEecCccccc-----ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccc
Confidence 99999999975 56778888755432 123579999999986431 2345568999999999999
Q ss_pred cCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhh-CCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHH
Q 044036 280 KNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWV-APGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADER 358 (875)
Q Consensus 280 kn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l-~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~ 358 (875)
.+ ....+++..+.+++||+|||||++++ +.+..+.++ .|..+.
T Consensus 388 pA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye-------------------------------- 431 (732)
T TIGR00603 388 PA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE-------------------------------- 431 (732)
T ss_pred cH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeee--------------------------------
Confidence 54 45556778889999999999999876 334444443 232211
Q ss_pred HHHHHHHHHHHHHhhchhHHh-hccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhc
Q 044036 359 KQHLVAVLRKYLLRRTKEETI-GHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRL 437 (875)
Q Consensus 359 ~~~L~~~L~~~~lRR~k~~vi-~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 437 (875)
....+.+ ...+.+.....|+|+|++.....| +.....
T Consensus 432 --------------~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~y---l~~~~~------------------------- 469 (732)
T TIGR00603 432 --------------ANWMELQKKGFIANVQCAEVWCPMTPEFYREY---LRENSR------------------------- 469 (732)
T ss_pred --------------cCHHHHHhCCccccceEEEEEecCCHHHHHHH---HHhcch-------------------------
Confidence 0011111 223344555679999998654444 321000
Q ss_pred cCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCch
Q 044036 438 DNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGK 517 (875)
Q Consensus 438 ~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K 517 (875)
.+..-. ..+..|
T Consensus 470 ------------------~k~~l~--------------------------------------------------~~np~K 481 (732)
T TIGR00603 470 ------------------KRMLLY--------------------------------------------------VMNPNK 481 (732)
T ss_pred ------------------hhhHHh--------------------------------------------------hhChHH
Confidence 000000 012258
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccc
Q 044036 518 MRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLG 597 (875)
Q Consensus 518 l~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~G 597 (875)
+.++..|+..+...++|+||||+++..++.+...| + ...++|.|+..+|.+++++|++++... +|++|++|++|
T Consensus 482 ~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~-vLv~SkVgdeG 555 (732)
T TIGR00603 482 FRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVN-TIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCcc-EEEEecccccc
Confidence 99999999877678999999999999888887776 3 355999999999999999998765544 45566999999
Q ss_pred cCCCCCCEEEEcCCCC-CchhHHHhhhcccccCCcc-----eEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044036 598 LNLVSANRVVIFDPNW-NPAQDLQAQDRSFRFGQKR-----HVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS 665 (875)
Q Consensus 598 LNL~~An~VI~~D~~W-Np~~~~QaigR~~RiGQ~k-----~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~ 665 (875)
|||++|++||++++++ |+..+.||+||+.|.+..+ +..+|.|++.+|.|+..-.+ +.+-|+++.+.
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~--Rq~fl~~qGY~ 627 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTK--RQRFLVDQGYS 627 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHH--HHHHHHHCCCe
Confidence 9999999999999986 9999999999999998764 37899999999999877543 34455555443
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.3e-40 Score=364.34 Aligned_cols=282 Identities=32% Similarity=0.515 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHh---------hCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch
Q 044036 140 HQREGVKFLYKLY---------KNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV 210 (875)
Q Consensus 140 yQ~~gv~~l~~~~---------~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL 210 (875)
||++||.||+.++ ...+|||||||||+|||+++++++..+..... ....+++|||||.++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~-----------~~~~~~~LIv~P~~l 69 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFP-----------QRGEKKTLIVVPSSL 69 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCT-----------TSS-S-EEEEE-TTT
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccc-----------cccccceeEeeccch
Confidence 8999999999998 77889999999999999999999997754321 223446999999999
Q ss_pred HHHHHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeeccccc-----ccccccccccccEEEEcCCccccCc
Q 044036 211 IQNWEIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYR-----IHGSILSEVNWEIVIVDEAHRLKNE 282 (875)
Q Consensus 211 l~qW~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~-----~~~~~l~~~~w~~VIiDEAH~ikn~ 282 (875)
+.||..|+.+|++ .++.++.|..............++|+|+||+++. .....+...+|++||+||||++||.
T Consensus 70 ~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 70 LSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT
T ss_pred hhhhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc
Confidence 9999999999983 7899999887222111112346789999999999 5667778889999999999999999
Q ss_pred ccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHH
Q 044036 283 KSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362 (875)
Q Consensus 283 ~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L 362 (875)
.+..++++..+.+.++|+|||||++|++.|+|++++|+.|..+++...|...|..+ ...........|
T Consensus 150 ~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~------------~~~~~~~~~~~L 217 (299)
T PF00176_consen 150 DSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP------------DKENSYENIERL 217 (299)
T ss_dssp TSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH------------HHTHHHHHHHHH
T ss_pred cccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh------------cccccccccccc
Confidence 99999999999999999999999999999999999999999999999999998665 122345667889
Q ss_pred HHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCC
Q 044036 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDG 442 (875)
Q Consensus 363 ~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (875)
..+++++++||++.++.. .+|+..+.++.|+|++.|+..|+.+........ .. ...
T Consensus 218 ~~~l~~~~~r~~~~d~~~-~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~--~~---------------------~~~ 273 (299)
T PF00176_consen 218 RELLSEFMIRRTKKDVEK-ELPPKIEHVINVELSPEQRELYNELLKEARENL--KQ---------------------SSR 273 (299)
T ss_dssp HHHHCCCEECHCGGGGCT-TSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCC--TT----------------------T-
T ss_pred ccccchhhhhhhcccccc-cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHH--Hh---------------------hcc
Confidence 999999999999998733 467899999999999999999998766321110 00 000
Q ss_pred CCCCCccchhhHHHHHHHHhcccccc
Q 044036 443 CDSCPFCLVLPCLVKLQQISNHLELI 468 (875)
Q Consensus 443 ~~~~~~~~~l~~l~~Lr~~~nh~~l~ 468 (875)
........++..+..|+++|+||.++
T Consensus 274 ~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 274 KKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp -TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred cchhhHHHHHHHHHHHHHHhCCcccC
Confidence 11112345788899999999999874
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.4e-35 Score=362.94 Aligned_cols=458 Identities=16% Similarity=0.181 Sum_probs=284.4
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+|+||.+.+..++. .++|++++||+|||++++.++...+. ...+++|||||+ .|+.||
T Consensus 15 ~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~---------------~~~~~vLvl~Pt~~L~~Q~ 74 (773)
T PRK13766 15 EARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH---------------KKGGKVLILAPTKPLVEQH 74 (773)
T ss_pred CccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH---------------hCCCeEEEEeCcHHHHHHH
Confidence 789999999987765 38999999999999999988887652 135789999997 789999
Q ss_pred HHHHHHhcCC---cEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcccHHHHH
Q 044036 215 EIEFSRWSTF---NVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEKSKLYMA 289 (875)
Q Consensus 215 ~~E~~k~~~~---~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~S~~~ka 289 (875)
..++.++++. ++.+++|............ +.+|+|+|++.+..+. ..+...+|++||+||||++.+..+..+.+
T Consensus 75 ~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~ 153 (773)
T PRK13766 75 AEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIA 153 (773)
T ss_pred HHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHH
Confidence 9999998764 7888888765443333333 4589999999887542 33444579999999999998765544332
Q ss_pred HHhc---cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHH----HHHHhcchhccCCCCCchhHHHHHHHHHHHHH
Q 044036 290 CLEL---KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREH----FREFYDEPLKHGQRLTAPERFIRIADERKQHL 362 (875)
Q Consensus 290 l~~l---~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~----F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L 362 (875)
-... +..++++|||||.++ ...+..++..|....+..... +...+..+-..-..... ......+
T Consensus 154 ~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l--------~~~~~~i 224 (773)
T PRK13766 154 ERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVEL--------PEELKEI 224 (773)
T ss_pred HHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCC--------cHHHHHH
Confidence 2222 345689999999876 567777777765443322222 22222211000000111 1223456
Q ss_pred HHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCC-C
Q 044036 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNL-D 441 (875)
Q Consensus 363 ~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 441 (875)
...|..++.++.+...-....++....+....+...++.++..+...... .. ...........+... .
T Consensus 225 ~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~----------~~~~~~~~~~~l~~~~~ 293 (773)
T PRK13766 225 RDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSE-GY----------EAISILAEAMKLRHAVE 293 (773)
T ss_pred HHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchH-HH----------HHHHHHHHHHHHHHHHH
Confidence 67777777666654221111212221122222233333333222211000 00 000000000000000 0
Q ss_pred CCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHH
Q 044036 442 GCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRAL 521 (875)
Q Consensus 442 ~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L 521 (875)
.........+...+..++.....+.. .........+........ . .. .....++|+..|
T Consensus 294 ~l~~~~~~~~~~y~~~l~~~~~~~~~-----~~~~~~l~~~~~~~~~~~--~------------~~--~~~~~~pK~~~L 352 (773)
T PRK13766 294 LLETQGVEALRRYLERLREEARSSGG-----SKASKRLVEDPRFRKAVR--K------------AK--ELDIEHPKLEKL 352 (773)
T ss_pred HHHHhCHHHHHHHHHHHHhhccccCC-----cHHHHHHHhCHHHHHHHH--H------------HH--hcccCChHHHHH
Confidence 00000000111112222211110000 000000000000000000 0 00 001234799999
Q ss_pred HHHHHHhh--cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCC--------CCHHHHHHHHHHhcCCCCceEEEEec
Q 044036 522 EKLMYSWA--SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGS--------TPSNLRQSLVDDFNSSPSKQVFLIST 591 (875)
Q Consensus 522 ~~LL~~~~--~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~--------~~~~eR~~~i~~F~~~~~~~v~LiSt 591 (875)
.++|..+. ..+.|+||||++..+++.|..+|...|+.+..++|. +++.+|.+++++|+++.. -+|++|
T Consensus 353 ~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~--~vLvaT 430 (773)
T PRK13766 353 REIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEF--NVLVST 430 (773)
T ss_pred HHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCC--CEEEEC
Confidence 99999876 578999999999999999999999999999999997 888999999999998743 378999
Q ss_pred CCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 044036 592 RAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLS 660 (875)
Q Consensus 592 ~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~ 660 (875)
.++++|+|++.+++||+|||+||+..++|++||++|.|+ +.||.|++.+|.||.+|.....|.+.+
T Consensus 431 ~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 431 SVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999988776 678999999999999999887777665
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=5.3e-35 Score=343.02 Aligned_cols=287 Identities=22% Similarity=0.322 Sum_probs=208.9
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCc-chhhc-ccccCCCCcEEEEcCcchHHHHHHHHHHhcC--CcEEEEe
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSD-STILK-DNKVDKKGYVLIICPSSVIQNWEIEFSRWST--FNVSIYH 230 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~-~~~~~-~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~--~~v~v~~ 230 (875)
+..+++||+||+|||...++....-+.+..... +.+.. .......|.+|||||.+++.||-.||.++++ +++..|.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEe
Confidence 344599999999999998887665432221111 11111 1223467899999999999999999999988 5899999
Q ss_pred CCChhHHHHHHHhCCceEEEeeccccccc----------------------ccccccccccEEEEcCCccccCcccHHHH
Q 044036 231 GPNRDMILEKLEACGVEVLITSFDSYRIH----------------------GSILSEVNWEIVIVDEAHRLKNEKSKLYM 288 (875)
Q Consensus 231 G~~r~~~~~~~~~~~~~VvItTy~~l~~~----------------------~~~l~~~~w~~VIiDEAH~ikn~~S~~~k 288 (875)
|-.+...........+|||+|||++++.+ ...|-.+.|++||+|||+.+....|..++
T Consensus 454 Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~ 533 (1394)
T KOG0298|consen 454 GIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAAE 533 (1394)
T ss_pred chhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHHH
Confidence 97766555556667899999999999853 13455678999999999999999999999
Q ss_pred HHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 044036 289 ACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRK 368 (875)
Q Consensus 289 al~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~ 368 (875)
.+..|.+.++|+.||||+|+ +++|+.|+.||+..+|+...+|.+.+..+.... .....+.++...
T Consensus 534 M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--------------a~~~~~~dl~~q 598 (1394)
T KOG0298|consen 534 MVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--------------AKCEPLLDLFKQ 598 (1394)
T ss_pred HHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--------------hhhhhHHHHHHh
Confidence 99999999999999999999 999999999999999999999999887765421 223456788888
Q ss_pred HHHhhchhHHhhcc-CCCceeEEEEecCCHHHHHHHHHHhcch------hHHHhhhccCCCCCCCCchhHHHHhhccCCC
Q 044036 369 YLLRRTKEETIGHL-MMGKEDNVVFCTMSDLQKRAYRRLLQLP------EIQCLINKDLPCSCGSPLTQVECCKRLDNLD 441 (875)
Q Consensus 369 ~~lRR~k~~vi~~~-lp~k~e~vv~~~lt~~q~~~Y~~~l~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (875)
.+-|+.+.++...+ +|+..+.+....+++.+..+|+..-..- .+..+-+.... + .....
T Consensus 599 ~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~---~-----------~sd~~ 664 (1394)
T KOG0298|consen 599 LLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLD---N-----------SSDLA 664 (1394)
T ss_pred hhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccc---c-----------ccccc
Confidence 89999998887765 4555566666777777777776532210 00000000000 0 00112
Q ss_pred CCCCCCccchhhHHHHHHHHhccccccCC
Q 044036 442 GCDSCPFCLVLPCLVKLQQISNHLELIKP 470 (875)
Q Consensus 442 ~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~ 470 (875)
+...+....+...+.+||++|.||..-..
T Consensus 665 ~l~~~~~a~i~~~l~rLRq~Cchplv~~~ 693 (1394)
T KOG0298|consen 665 SLSPQLLAIILKWLLRLRQACCHPLVGNS 693 (1394)
T ss_pred cCChhhHHHHHHHHHHHHHhhcccccccC
Confidence 22334455678889999999999976543
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.8e-32 Score=294.59 Aligned_cols=457 Identities=17% Similarity=0.184 Sum_probs=283.5
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl~ 212 (875)
..+.|.||..-+.-.+. ++++++-++|||||+.|+.++...+.. ..+.+|+++| ..|+.
T Consensus 13 ~ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~---------------~~~kvlfLAPTKPLV~ 72 (542)
T COG1111 13 TIEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRW---------------FGGKVLFLAPTKPLVL 72 (542)
T ss_pred cccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHh---------------cCCeEEEecCCchHHH
Confidence 34789999988887766 599999999999999999999977643 2337999999 58999
Q ss_pred HHHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcccHHH
Q 044036 213 NWEIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEKSKLY 287 (875)
Q Consensus 213 qW~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~S~~~ 287 (875)
|...-+.+.+. ..+..++|.-+.......+..+ .|++.|++++.++. ..+..-++.++|+||||+.-+..+..+
T Consensus 73 Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~-kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~ 151 (542)
T COG1111 73 QHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKK-KVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVF 151 (542)
T ss_pred HHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhC-CEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHH
Confidence 99999999876 5788999987766555544433 69999999998774 356666889999999999877655443
Q ss_pred --HHHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCH----HHHHHHhcchhccC-CCCCchhHHHHHHHHHH
Q 044036 288 --MACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTR----EHFREFYDEPLKHG-QRLTAPERFIRIADERK 359 (875)
Q Consensus 288 --kal~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~----~~F~~~~~~~i~~g-~~~~~~~~~~~~~~~~~ 359 (875)
+...+.+ ..+.++||||| -++.+.+...++-|.....--. .+...+.. .++-. -...- ..-.
T Consensus 152 Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~-~~kve~ikV~l--------p~e~ 221 (542)
T COG1111 152 VAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVK-KIKVEWIKVDL--------PEEI 221 (542)
T ss_pred HHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhc-cceeEEEeccC--------cHHH
Confidence 3333333 34679999999 4566666666665554432111 11111111 00000 00000 0112
Q ss_pred HHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccC
Q 044036 360 QHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDN 439 (875)
Q Consensus 360 ~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 439 (875)
..+++.|+..+-.|.+.---..+. ...++. .++++.... . ............
T Consensus 222 ~~ir~~l~~~l~~~Lk~L~~~g~~------~~~~~~--~~kdl~~~~-~---~~~~~a~~~~~~---------------- 273 (542)
T COG1111 222 KEIRDLLRDALKPRLKPLKELGVI------ESSSPV--SKKDLLELR-Q---IRLIMAKNEDSD---------------- 273 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCce------eccCcc--cHhHHHHHH-H---HHHHhccCccHH----------------
Confidence 345555555554444431111110 011111 122222211 0 000000000000
Q ss_pred CCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchh--------hhh-hHHHHhhhcCCCccccCCCCCCccccCCC
Q 044036 440 LDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDK--------QRK-DAELASAVFGPDIDLVGGNAQNESFIGLS 510 (875)
Q Consensus 440 ~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~--------~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (875)
....+.++..+.++.--..++....-...-. ... ....+..++.+. ..... .........
T Consensus 274 --------~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~-~~~~a--l~~~~~~~~ 342 (542)
T COG1111 274 --------KFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADP-YFKRA--LRLLIRADE 342 (542)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcCh-hhHHH--HHHHHHhcc
Confidence 0011122222222211112221111000000 000 000000000000 00000 000000001
Q ss_pred CcccCchHHHHHHHHHHhh--cCCCeEEEEecchhHHHHHHHHHHHcCCcEE-EEeC--------CCCHHHHHHHHHHhc
Q 044036 511 DVKSCGKMRALEKLMYSWA--SKGDKILLFSYSVRMLDILEKFLIRKGYSFS-RLDG--------STPSNLRQSLVDDFN 579 (875)
Q Consensus 511 ~~~~s~Kl~~L~~LL~~~~--~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~-~ldG--------~~~~~eR~~~i~~F~ 579 (875)
.--..+||+.+.+++++.. ..+.+||||++++++++.|..+|...|.... ++-| +|++.+..++|++|+
T Consensus 343 ~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr 422 (542)
T COG1111 343 SGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFR 422 (542)
T ss_pred ccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHh
Confidence 1123479999999999887 5678999999999999999999999998875 6666 599999999999999
Q ss_pred CCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHH
Q 044036 580 SSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQL 659 (875)
Q Consensus 580 ~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l 659 (875)
.+.-. +|++|.+|.+|||+++.|.||+|||.-+|.+.+||+||++| ++.-.||-|+++||-||.-|....+|.+-
T Consensus 423 ~Ge~n--VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~ 497 (542)
T COG1111 423 KGEYN--VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQK 497 (542)
T ss_pred cCCce--EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHH
Confidence 97544 89999999999999999999999999999999999999998 57888999999999999999999999877
Q ss_pred HHHHhc
Q 044036 660 SNIAVS 665 (875)
Q Consensus 660 ~~~~~~ 665 (875)
+...+.
T Consensus 498 m~e~i~ 503 (542)
T COG1111 498 MIESIR 503 (542)
T ss_pred HHHHHH
Confidence 665554
No 25
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.2e-33 Score=297.17 Aligned_cols=382 Identities=20% Similarity=0.337 Sum_probs=285.0
Q ss_pred HHHHhhhccccCCcccccCCCCCCccccCCCCCCCcccCCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHH
Q 044036 91 EQEQEKFGRHQLGQFQFDHTGPFEPLVLSKDGEYPIIQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTI 170 (875)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTi 170 (875)
|.+.+.....+..++.++++ .++...+++|.-.|.+.+.-.-...+||||...++.|..+-+. +.||+.-++|.|||+
T Consensus 258 ei~~e~vE~vkkRCieidyP-lLeEYDFRND~~npdl~idLKPst~iRpYQEksL~KMFGNgRA-RSGiIVLPCGAGKtL 335 (776)
T KOG1123|consen 258 EIKQESVETVKKRCIEIDYP-LLEEYDFRNDNVNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRA-RSGIIVLPCGAGKTL 335 (776)
T ss_pred eecHHHHHHHHHhhhccCch-hhhhhccccCCCCCCCCcCcCcccccCchHHHHHHHHhCCCcc-cCceEEEecCCCCce
Confidence 34555666666777777765 4677788888877777777777789999999999999764433 466778899999999
Q ss_pred HHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHHHHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCc
Q 044036 171 QTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQNWEIEFSRWST---FNVSIYHGPNRDMILEKLEACGV 246 (875)
Q Consensus 171 qaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~qW~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~ 246 (875)
..++.++.+ .+.+||+|-.++ +.||+.+|..|.. -.+..++.+.++.. ..+.
T Consensus 336 VGvTAa~ti-------------------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~-----~~~~ 391 (776)
T KOG1123|consen 336 VGVTAACTI-------------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERF-----PSGA 391 (776)
T ss_pred eeeeeeeee-------------------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccC-----CCCC
Confidence 998877654 677999999887 9999999999986 56778887766542 4567
Q ss_pred eEEEeeccccccc----------ccccccccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHH
Q 044036 247 EVLITSFDSYRIH----------GSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNL 316 (875)
Q Consensus 247 ~VvItTy~~l~~~----------~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~L 316 (875)
+|+|+||.++... .+.+....|.++|+||.|.+ +...+.+.+.-+.+++.|+||||.+.. +|-..-
T Consensus 392 gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFRRVlsiv~aHcKLGLTATLvRE--DdKI~D 467 (776)
T KOG1123|consen 392 GVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFRRVLSIVQAHCKLGLTATLVRE--DDKITD 467 (776)
T ss_pred cEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHHHHHHHHHHHhhccceeEEeec--cccccc
Confidence 8999999998632 34677889999999999998 666777778888999999999998854 344445
Q ss_pred HhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCC
Q 044036 317 FDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMS 396 (875)
Q Consensus 317 l~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt 396 (875)
|+||-...+-... |. .|.+ +........--|||+||
T Consensus 468 LNFLIGPKlYEAn-Wm----------------------------dL~~---------------kGhIA~VqCaEVWCpMt 503 (776)
T KOG1123|consen 468 LNFLIGPKLYEAN-WM----------------------------DLQK---------------KGHIAKVQCAEVWCPMT 503 (776)
T ss_pred cceeecchhhhcc-HH----------------------------HHHh---------------CCceeEEeeeeeecCCC
Confidence 5665332221111 10 0110 00111233445999999
Q ss_pred HHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCc
Q 044036 397 DLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEP 476 (875)
Q Consensus 397 ~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~ 476 (875)
+. .|+.++.......++ +
T Consensus 504 ~e---Fy~eYL~~~t~kr~l---------------------------------------------------L-------- 521 (776)
T KOG1123|consen 504 PE---FYREYLRENTRKRML---------------------------------------------------L-------- 521 (776)
T ss_pred HH---HHHHHHhhhhhhhhe---------------------------------------------------e--------
Confidence 95 566665421111000 0
Q ss_pred hhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcC
Q 044036 477 DKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKG 556 (875)
Q Consensus 477 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g 556 (875)
-+.+..|+++..-|++.+...|+|+||||..+-.|....-.| |
T Consensus 522 ----------------------------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~ 564 (776)
T KOG1123|consen 522 ----------------------------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---G 564 (776)
T ss_pred ----------------------------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---C
Confidence 022336999999999999999999999999988776555544 4
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCC-CchhHHHhhhcccccCCc----
Q 044036 557 YSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNW-NPAQDLQAQDRSFRFGQK---- 631 (875)
Q Consensus 557 ~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~W-Np~~~~QaigR~~RiGQ~---- 631 (875)
-+ +|.|.|++.+|.+++++|+.++.+..+++| ++|...++|+.||.+|....+. +-..+.||.||+.|-...
T Consensus 565 Kp--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~ 641 (776)
T KOG1123|consen 565 KP--FIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEE 641 (776)
T ss_pred Cc--eEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccc
Confidence 44 589999999999999999998888778887 8999999999999999999985 567788999999996532
Q ss_pred ceEEEEEEeeCCCHHHH
Q 044036 632 RHVIVFRLLSAGSLEEL 648 (875)
Q Consensus 632 k~V~VyrLi~~gTiEE~ 648 (875)
-+++.|.|++.+|.|-.
T Consensus 642 fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 642 FNAFFYSLVSKDTQEMY 658 (776)
T ss_pred cceeeeeeeecchHHHH
Confidence 24889999999998754
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=2.2e-29 Score=287.96 Aligned_cols=365 Identities=20% Similarity=0.309 Sum_probs=268.0
Q ss_pred hhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-ch
Q 044036 132 SINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SV 210 (875)
Q Consensus 132 ~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sL 210 (875)
.....|||||.+++.-+...+...+.|++..++|.|||+.++.++..+ ..++|||||. .|
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-------------------~~~~Lvlv~~~~L 92 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-------------------KRSTLVLVPTKEL 92 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-------------------cCCEEEEECcHHH
Confidence 345579999999999888877668889999999999999999999876 2239999995 67
Q ss_pred HHHHHHHHHHhcCC--cEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcccHH
Q 044036 211 IQNWEIEFSRWSTF--NVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEKSKL 286 (875)
Q Consensus 211 l~qW~~E~~k~~~~--~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~S~~ 286 (875)
+.||.+.+.+++.. .+..+.|..+... . ..|.|+||+++.... ..+..-.|++||+||||++..+. .
T Consensus 93 ~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~--~ 163 (442)
T COG1061 93 LDQWAEALKKFLLLNDEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS--Y 163 (442)
T ss_pred HHHHHHHHHHhcCCccccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH--H
Confidence 99999999998885 4677777654431 0 369999999998753 33444479999999999995543 3
Q ss_pred HHHHHhccccc-eEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHH
Q 044036 287 YMACLELKTRN-RIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365 (875)
Q Consensus 287 ~kal~~l~~~~-rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~ 365 (875)
...+..+...+ +|+|||||...+-.....+...+.|
T Consensus 164 ~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~------------------------------------------- 200 (442)
T COG1061 164 RRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGP------------------------------------------- 200 (442)
T ss_pred HHHHHhhhcccceeeeccCceeecCCchhHHHHhcCC-------------------------------------------
Confidence 33445556666 9999999975443333333332221
Q ss_pred HHHHHHhhchhHHhh-ccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCC
Q 044036 366 LRKYLLRRTKEETIG-HLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCD 444 (875)
Q Consensus 366 L~~~~lRR~k~~vi~-~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (875)
........+.++ ..+.+.....+++.++......|.......... +....
T Consensus 201 ---~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~--~~~~~------------------------ 251 (442)
T COG1061 201 ---IVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFREL--LRARG------------------------ 251 (442)
T ss_pred ---eEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhh--hhhhh------------------------
Confidence 112222222333 455677788889989998888887654421100 00000
Q ss_pred CCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHH
Q 044036 445 SCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKL 524 (875)
Q Consensus 445 ~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~L 524 (875)
........+.+ ......|+..+..+
T Consensus 252 ------~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~ 276 (442)
T COG1061 252 ------TLRAENEARRI-------------------------------------------------AIASERKIAAVRGL 276 (442)
T ss_pred ------hhhHHHHHHHH-------------------------------------------------hhccHHHHHHHHHH
Confidence 00000000000 01223588888888
Q ss_pred HHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCC
Q 044036 525 MYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSAN 604 (875)
Q Consensus 525 L~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An 604 (875)
+..+. .+.+++||+.++...+.|...|...|+ +..++|.++..+|.++++.|+.+. ..+|++++++.+|+|++.|+
T Consensus 277 ~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~--~~~lv~~~vl~EGvDiP~~~ 352 (442)
T COG1061 277 LLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG--IKVLVTVKVLDEGVDIPDAD 352 (442)
T ss_pred HHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC--CCEEEEeeeccceecCCCCc
Confidence 88766 789999999999999999999998888 899999999999999999999976 44899999999999999999
Q ss_pred EEEEcCCCCCchhHHHhhhcccc-cCCcce--EEEEEEeeCCCHHHHHHHHHHH
Q 044036 605 RVVIFDPNWNPAQDLQAQDRSFR-FGQKRH--VIVFRLLSAGSLEELVYTRQVY 655 (875)
Q Consensus 605 ~VI~~D~~WNp~~~~QaigR~~R-iGQ~k~--V~VyrLi~~gTiEE~I~~rq~~ 655 (875)
.+|+..|.-++..+.|++||+.| ...+.. +..|-++..++.+..+..+...
T Consensus 353 ~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 353 VLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred EEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 99999999999999999999999 444444 7788888899988887766554
No 27
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=9.3e-29 Score=288.26 Aligned_cols=335 Identities=17% Similarity=0.213 Sum_probs=228.4
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..|+|||.+++.-++. +..+|+..++|+|||++++.++..+... ...++|||||. .|+.|
T Consensus 113 ~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~---------------~~~~vLilvpt~eL~~Q 173 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLEN---------------YEGKVLIIVPTTSLVTQ 173 (501)
T ss_pred CCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhc---------------CCCeEEEEECcHHHHHH
Confidence 5899999999987765 5678999999999999887765544321 23489999996 78999
Q ss_pred HHHHHHHhcCC---cE-EEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHH
Q 044036 214 WEIEFSRWSTF---NV-SIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMA 289 (875)
Q Consensus 214 W~~E~~k~~~~---~v-~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~ka 289 (875)
|.++|.+|... .+ .++.|..+. ...+|+|+|++.+......+ --++++||+||||++... .....
T Consensus 174 ~~~~l~~~~~~~~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~--~~~~i 242 (501)
T PHA02558 174 MIDDFVDYRLFPREAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGK--SLTSI 242 (501)
T ss_pred HHHHHHHhccccccceeEEecCcccC--------CCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccch--hHHHH
Confidence 99999998752 23 345554332 24579999999886544321 136899999999999653 34556
Q ss_pred HHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 044036 290 CLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRK 368 (875)
Q Consensus 290 l~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~ 368 (875)
+..+ +++++++|||||..... ..+.+..++.| +..
T Consensus 243 l~~~~~~~~~lGLTATp~~~~~-~~~~~~~~fG~----------------i~~--------------------------- 278 (501)
T PHA02558 243 ITKLDNCKFKFGLTGSLRDGKA-NILQYVGLFGD----------------IFK--------------------------- 278 (501)
T ss_pred HHhhhccceEEEEeccCCCccc-cHHHHHHhhCC----------------ceE---------------------------
Confidence 6667 67889999999953321 11111121111 000
Q ss_pred HHHhhchhHHhh-ccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCC
Q 044036 369 YLLRRTKEETIG-HLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCP 447 (875)
Q Consensus 369 ~~lRR~k~~vi~-~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (875)
+-...+.+. ..+.+.....+++..++.....+ ......
T Consensus 279 ---~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~----~~~~~~---------------------------------- 317 (501)
T PHA02558 279 ---PVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKL----KGEDYQ---------------------------------- 317 (501)
T ss_pred ---EecHHHHHhCCCcCCceEEEEeccCCHHHhhhh----cccchH----------------------------------
Confidence 000001111 11111122233444333211000 000000
Q ss_pred ccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHH
Q 044036 448 FCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYS 527 (875)
Q Consensus 448 ~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~ 527 (875)
..+..++ ....+...+..++..
T Consensus 318 --------~~~~~l~--------------------------------------------------~~~~Rn~~I~~~~~~ 339 (501)
T PHA02558 318 --------EEIKYIT--------------------------------------------------SHTKRNKWIANLALK 339 (501)
T ss_pred --------HHHHHHh--------------------------------------------------ccHHHHHHHHHHHHH
Confidence 0000000 011355667777777
Q ss_pred hhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEE
Q 044036 528 WASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVV 607 (875)
Q Consensus 528 ~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI 607 (875)
+...+.++|||+..+..++.|...|...|+++..++|+++.++|.++++.|+++ ...|++.|++..++|+|++.+++||
T Consensus 340 ~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l~eG~Dip~ld~vI 418 (501)
T PHA02558 340 LAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVFSTGISIKNLHHVI 418 (501)
T ss_pred HHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEcceeccccccccccEEE
Confidence 777889999999999999999999999999999999999999999999999875 3345666669999999999999999
Q ss_pred EcCCCCCchhHHHhhhcccccCCcc-eEEEEEEeeCC
Q 044036 608 IFDPNWNPAQDLQAQDRSFRFGQKR-HVIVFRLLSAG 643 (875)
Q Consensus 608 ~~D~~WNp~~~~QaigR~~RiGQ~k-~V~VyrLi~~g 643 (875)
+++|+.+...+.|++||++|.|..| .+.||.|+..-
T Consensus 419 l~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 419 FAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred EecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 9999999999999999999998765 68999998643
No 28
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=3.9e-26 Score=262.59 Aligned_cols=466 Identities=18% Similarity=0.185 Sum_probs=269.8
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~ 212 (875)
+..||+||.+-+.-.+ +.++|++.+||+|||+.|+.++...++ +.+.+++++.+|. .|+.
T Consensus 60 ~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~r--------------w~p~~KiVF~aP~~pLv~ 120 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFE--------------WRPKGKVVFLAPTRPLVN 120 (746)
T ss_pred cccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHh--------------cCCcceEEEeeCCchHHH
Confidence 4489999999998765 689999999999999999999888774 3456999999996 5788
Q ss_pred HHHHHHHHhcC-CcEEEEeCCChh-HHHHHHHhCCceEEEeeccccccccccccc---ccccEEEEcCCccccCc--ccH
Q 044036 213 NWEIEFSRWST-FNVSIYHGPNRD-MILEKLEACGVEVLITSFDSYRIHGSILSE---VNWEIVIVDEAHRLKNE--KSK 285 (875)
Q Consensus 213 qW~~E~~k~~~-~~v~v~~G~~r~-~~~~~~~~~~~~VvItTy~~l~~~~~~l~~---~~w~~VIiDEAH~ikn~--~S~ 285 (875)
|....+..++- ..+....|+... .....+.. ..+|++.|.+.+.++...-.. -.|.++|+||||+-... .+.
T Consensus 121 QQ~a~~~~~~~~~~~T~~l~~~~~~~~r~~i~~-s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~ 199 (746)
T KOG0354|consen 121 QQIACFSIYLIPYSVTGQLGDTVPRSNRGEIVA-SKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNN 199 (746)
T ss_pred HHHHHHhhccCcccceeeccCccCCCchhhhhc-ccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHH
Confidence 88888888764 666666665321 11112222 347999999999876543222 34899999999997443 233
Q ss_pred HHHHHHhc--cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCC--HHHHHHHhcchhccCCCCCchhHHHHHHHHHHHH
Q 044036 286 LYMACLEL--KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGT--REHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361 (875)
Q Consensus 286 ~~kal~~l--~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~--~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 361 (875)
..+.+..+ ...+.|+|||||- ++.+...+.++-|... +.- .......|..--+... .. .....-.......
T Consensus 200 Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~--i~-v~~~~~~~~~~~~ 274 (746)
T KOG0354|consen 200 IMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQ--IP-VDLSLCERDIEDP 274 (746)
T ss_pred HHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCc--cc-CcHHHhhhhhhhh
Confidence 44444444 3337799999997 7788777777666554 221 1112222221111110 00 0111122333456
Q ss_pred HHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCC
Q 044036 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLD 441 (875)
Q Consensus 362 L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (875)
+..++.+++.+-....+....... . ..-......+...+........ .| ......++...
T Consensus 275 f~~~i~p~l~~l~~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~q~-----------~~---f~~~~~~~~~~--- 334 (746)
T KOG0354|consen 275 FGMIIEPLLQQLQEEGLIEISDKS--T-SYEQWVVQAEKAAAPNGPENQR-----------NC---FYALHLRKYNL--- 334 (746)
T ss_pred HHHHHHHHHHHHHhcCcccccccc--c-cccchhhhhhhhhccCCCccch-----------hh---HHHHHHHHHHH---
Confidence 677777776543322211110000 0 0000001111111110000000 00 00000000000
Q ss_pred CCCCCCccchhhHHHHHH--HHhccccccCCCCCCCc-hhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchH
Q 044036 442 GCDSCPFCLVLPCLVKLQ--QISNHLELIKPNPRDEP-DKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKM 518 (875)
Q Consensus 442 ~~~~~~~~~~l~~l~~Lr--~~~nh~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl 518 (875)
.+-....+| ...+++.-+........ ........ ....+.+..... ..+........+|+
T Consensus 335 ---------~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~-~~~~~~~~m~~~-------~~l~~~~~~~npkl 397 (746)
T KOG0354|consen 335 ---------ALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR-LIRNFTENMNEL-------EHLSLDPPKENPKL 397 (746)
T ss_pred ---------HHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch-hhHHHHHHHHhh-------hhhhcCCCccChhH
Confidence 000000000 00001100100000000 00000000 000000000000 00111112346899
Q ss_pred HHHHHHHHHhhc--CCCeEEEEecchhHHHHHHHHHHH---cCCcEEEEeC--------CCCHHHHHHHHHHhcCCCCce
Q 044036 519 RALEKLMYSWAS--KGDKILLFSYSVRMLDILEKFLIR---KGYSFSRLDG--------STPSNLRQSLVDDFNSSPSKQ 585 (875)
Q Consensus 519 ~~L~~LL~~~~~--~g~KVLIFs~~~~~ld~L~~~L~~---~g~~~~~ldG--------~~~~~eR~~~i~~F~~~~~~~ 585 (875)
+.|.+.|.+... +..++|||+.++..++.|..+|.. .|++...+-| +|++.+.+++++.|++|...
T Consensus 398 e~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N- 476 (746)
T KOG0354|consen 398 EKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN- 476 (746)
T ss_pred HHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc-
Confidence 999999987654 557999999999999999999883 3566666666 58899999999999997654
Q ss_pred EEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044036 586 VFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS 665 (875)
Q Consensus 586 v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~ 665 (875)
+||+|.+|.||||+..||-||.||..-||..+.||+|| +| ++.-.++-|.+ |.-+-.....+..|..+++..++
T Consensus 477 -vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 477 -VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-GSEVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred -EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-chhHHHHHHHHHhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999 67 66666666666 55555555667888888888777
Q ss_pred Ccc
Q 044036 666 GKL 668 (875)
Q Consensus 666 g~~ 668 (875)
+..
T Consensus 551 ~~q 553 (746)
T KOG0354|consen 551 KIQ 553 (746)
T ss_pred HHH
Confidence 543
No 29
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=5.5e-26 Score=266.92 Aligned_cols=322 Identities=19% Similarity=0.221 Sum_probs=219.3
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHH-HHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIA-FLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaia-ll~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
.+.|+|..++..++. ++..|+..++|+|||++.+. ++..+...... .......+|||||+ .|+.|
T Consensus 152 ~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~---------~~~~gp~~LIL~PTreLa~Q 218 (545)
T PTZ00110 152 EPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLL---------RYGDGPIVLVLAPTRELAEQ 218 (545)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccc---------cCCCCcEEEEECChHHHHHH
Confidence 578999999987765 88999999999999998653 33343322100 01234568999996 67889
Q ss_pred HHHHHHHhcC---CcEEEEeCC-ChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCccc--H
Q 044036 214 WEIEFSRWST---FNVSIYHGP-NRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEKS--K 285 (875)
Q Consensus 214 W~~E~~k~~~---~~v~v~~G~-~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~S--~ 285 (875)
|.+++.+++. +++.+.+|. ........+ ..+++|+|+|++.+.... ..+.-.+..+||+||||++..... .
T Consensus 219 i~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l-~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~ 297 (545)
T PTZ00110 219 IREQCNKFGASSKIRNTVAYGGVPKRGQIYAL-RRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQ 297 (545)
T ss_pred HHHHHHHHhcccCccEEEEeCCCCHHHHHHHH-HcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHH
Confidence 9999999865 455555544 443333333 346799999998765321 122233578999999999876432 2
Q ss_pred HHHHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHH
Q 044036 286 LYMACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364 (875)
Q Consensus 286 ~~kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~ 364 (875)
+.+.+..+ .....+++|||.- .++..+
T Consensus 298 i~~il~~~~~~~q~l~~SAT~p----~~v~~l------------------------------------------------ 325 (545)
T PTZ00110 298 IRKIVSQIRPDRQTLMWSATWP----KEVQSL------------------------------------------------ 325 (545)
T ss_pred HHHHHHhCCCCCeEEEEEeCCC----HHHHHH------------------------------------------------
Confidence 34444455 3445689999941 111100
Q ss_pred HHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCC
Q 044036 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCD 444 (875)
Q Consensus 365 ~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (875)
...++ .. . ...+.+..... .....
T Consensus 326 -~~~l~---------~~----~-~v~i~vg~~~l--~~~~~--------------------------------------- 349 (545)
T PTZ00110 326 -ARDLC---------KE----E-PVHVNVGSLDL--TACHN--------------------------------------- 349 (545)
T ss_pred -HHHHh---------cc----C-CEEEEECCCcc--ccCCC---------------------------------------
Confidence 00000 00 0 00010000000 00000
Q ss_pred CCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHH
Q 044036 445 SCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKL 524 (875)
Q Consensus 445 ~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~L 524 (875)
+. .... ......|...|..+
T Consensus 350 -------------i~---q~~~--------------------------------------------~~~~~~k~~~L~~l 369 (545)
T PTZ00110 350 -------------IK---QEVF--------------------------------------------VVEEHEKRGKLKML 369 (545)
T ss_pred -------------ee---EEEE--------------------------------------------EEechhHHHHHHHH
Confidence 00 0000 00112367778888
Q ss_pred HHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCC
Q 044036 525 MYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSAN 604 (875)
Q Consensus 525 L~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An 604 (875)
|..+...+.++|||++....++.|...|...|+.+..++|.+++.+|..+++.|+++... +||+|+++++|||+.+++
T Consensus 370 l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~--ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 370 LQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP--IMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc--EEEEcchhhcCCCcccCC
Confidence 888766788999999999999999999999999999999999999999999999987554 899999999999999999
Q ss_pred EEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 605 RVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 605 ~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
+||+||+|+++..+.||+||++|.|.+-. +|.|++.+
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 99999999999999999999999998654 46667665
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=1.9e-25 Score=259.15 Aligned_cols=314 Identities=17% Similarity=0.212 Sum_probs=216.9
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+.|+|.+++..++. +.+.|+..++|+|||...+..+...+... .....+|||||+ .|..||
T Consensus 26 ~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~-------------~~~~~~lil~PtreLa~Q~ 88 (460)
T PRK11776 26 EMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVK-------------RFRVQALVLCPTRELADQV 88 (460)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhc-------------cCCceEEEEeCCHHHHHHH
Confidence 578899999998875 78999999999999988655554443211 123368999996 678999
Q ss_pred HHHHHHhc----CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHH
Q 044036 215 EIEFSRWS----TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKL 286 (875)
Q Consensus 215 ~~E~~k~~----~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~ 286 (875)
.+++.+++ +.++..++|.............+.+|+|+|++.+.... ..+.--++++||+||||++-+.. ...
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l 168 (460)
T PRK11776 89 AKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAI 168 (460)
T ss_pred HHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHH
Confidence 99998764 36777777765433222223367899999998876432 22333467899999999986543 223
Q ss_pred HHHHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHH
Q 044036 287 YMACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365 (875)
Q Consensus 287 ~kal~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~ 365 (875)
...+..+. ....+++|||+-. .+. .+
T Consensus 169 ~~i~~~~~~~~q~ll~SAT~~~-~~~----------------------------------------------------~l 195 (460)
T PRK11776 169 DAIIRQAPARRQTLLFSATYPE-GIA----------------------------------------------------AI 195 (460)
T ss_pred HHHHHhCCcccEEEEEEecCcH-HHH----------------------------------------------------HH
Confidence 33444443 3456899999621 000 00
Q ss_pred HHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCC
Q 044036 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDS 445 (875)
Q Consensus 366 L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (875)
...++ + . ...+.+..... ...
T Consensus 196 ~~~~~-~-------------~-~~~i~~~~~~~--------~~~------------------------------------ 216 (460)
T PRK11776 196 SQRFQ-R-------------D-PVEVKVESTHD--------LPA------------------------------------ 216 (460)
T ss_pred HHHhc-C-------------C-CEEEEECcCCC--------CCC------------------------------------
Confidence 00000 0 0 00000000000 000
Q ss_pred CCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHH
Q 044036 446 CPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525 (875)
Q Consensus 446 ~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL 525 (875)
+..+ +.. .....|+..|..+|
T Consensus 217 ---------------i~~~-----------------------------------------~~~---~~~~~k~~~l~~ll 237 (460)
T PRK11776 217 ---------------IEQR-----------------------------------------FYE---VSPDERLPALQRLL 237 (460)
T ss_pred ---------------eeEE-----------------------------------------EEE---eCcHHHHHHHHHHH
Confidence 0000 000 00112777788888
Q ss_pred HHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCE
Q 044036 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANR 605 (875)
Q Consensus 526 ~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~ 605 (875)
... .+.++||||+....++.+...|...|+.+..++|.+++.+|+.+++.|+++... +||+|+++++|||+.++++
T Consensus 238 ~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~--vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 238 LHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS--VLVATDVAARGLDIKALEA 313 (460)
T ss_pred Hhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc--EEEEecccccccchhcCCe
Confidence 653 467899999999999999999999999999999999999999999999987544 8899999999999999999
Q ss_pred EEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 606 VVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 606 VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
||+||+|.++..+.||+||++|.|+.-. +|.|++.+
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 9999999999999999999999997644 56666654
No 31
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1.9e-25 Score=256.44 Aligned_cols=321 Identities=15% Similarity=0.178 Sum_probs=214.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+.|+|.+++.-++. +.+.|+..++|+|||+..+..+...+....... ........+|||||. .|+.||
T Consensus 30 ~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~------~~~~~~~~~lil~PtreLa~Qi 99 (423)
T PRK04837 30 NCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE------DRKVNQPRALIMAPTRELAVQI 99 (423)
T ss_pred CCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhccccc------ccccCCceEEEECCcHHHHHHH
Confidence 457889999987766 889999999999999987655443332111000 001234679999996 678888
Q ss_pred HHHHHHhc---CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHHH
Q 044036 215 EIEFSRWS---TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKLY 287 (875)
Q Consensus 215 ~~E~~k~~---~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~~ 287 (875)
.+++..+. ++++..++|.............+++|+|+|++.+.... ..+..-++.+||+||||++-+.. ....
T Consensus 100 ~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~ 179 (423)
T PRK04837 100 HADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIR 179 (423)
T ss_pred HHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHH
Confidence 88877664 47777777765433322233456899999998875332 23333467899999999986543 2222
Q ss_pred HHHHhcc---ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHH
Q 044036 288 MACLELK---TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364 (875)
Q Consensus 288 kal~~l~---~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~ 364 (875)
..+..+. ....+++|||.-. ...+
T Consensus 180 ~i~~~~~~~~~~~~~l~SAT~~~-~~~~---------------------------------------------------- 206 (423)
T PRK04837 180 WLFRRMPPANQRLNMLFSATLSY-RVRE---------------------------------------------------- 206 (423)
T ss_pred HHHHhCCCccceeEEEEeccCCH-HHHH----------------------------------------------------
Confidence 3334443 2334788988521 0000
Q ss_pred HHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCC
Q 044036 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCD 444 (875)
Q Consensus 365 ~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (875)
+...++ . -| ..+...+... . +.
T Consensus 207 ~~~~~~---------~--~p---~~i~v~~~~~----------~----------------~~------------------ 228 (423)
T PRK04837 207 LAFEHM---------N--NP---EYVEVEPEQK----------T----------------GH------------------ 228 (423)
T ss_pred HHHHHC---------C--CC---EEEEEcCCCc----------C----------------CC------------------
Confidence 000000 0 00 0000000000 0 00
Q ss_pred CCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHH
Q 044036 445 SCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKL 524 (875)
Q Consensus 445 ~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~L 524 (875)
.+ .+. ++. .....|+..|..+
T Consensus 229 ------------~i----~~~-~~~------------------------------------------~~~~~k~~~l~~l 249 (423)
T PRK04837 229 ------------RI----KEE-LFY------------------------------------------PSNEEKMRLLQTL 249 (423)
T ss_pred ------------ce----eEE-EEe------------------------------------------CCHHHHHHHHHHH
Confidence 00 000 000 0112377777777
Q ss_pred HHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCC
Q 044036 525 MYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSAN 604 (875)
Q Consensus 525 L~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An 604 (875)
+... ...++|||++....++.|...|...|+++..++|.+++.+|..+++.|+++... +||+|+++++|||+++++
T Consensus 250 l~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~--vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 250 IEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD--ILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc--EEEEechhhcCCCccccC
Confidence 7653 467999999999999999999999999999999999999999999999987544 899999999999999999
Q ss_pred EEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 605 RVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 605 ~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
+||+||+|+++..|.|++||++|.|+.-.+ +.|+++
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 999999999999999999999999977544 555654
No 32
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=3e-25 Score=261.64 Aligned_cols=321 Identities=17% Similarity=0.245 Sum_probs=216.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+.|.|..++..++. +++.|+..++|+|||+.++..+...+.+..... .......++|||||. .|+.|+
T Consensus 31 ~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~------~~~~~~~raLIl~PTreLa~Qi 100 (572)
T PRK04537 31 RCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA------DRKPEDPRALILAPTRELAIQI 100 (572)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc------ccccCCceEEEEeCcHHHHHHH
Confidence 577889999998876 889999999999999987665544332111000 001124679999996 678899
Q ss_pred HHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc---ccccccccEEEEcCCccccCcc--cHH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS---ILSEVNWEIVIVDEAHRLKNEK--SKL 286 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~---~l~~~~w~~VIiDEAH~ikn~~--S~~ 286 (875)
.+++.+|+. +++..++|.............+++|+|+|++.+..... .+......+|||||||++-... ..+
T Consensus 101 ~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i 180 (572)
T PRK04537 101 HKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI 180 (572)
T ss_pred HHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHH
Confidence 999888864 66777787655444444445578999999987754321 2333456889999999985432 122
Q ss_pred HHHHHhcc---ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHH
Q 044036 287 YMACLELK---TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363 (875)
Q Consensus 287 ~kal~~l~---~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~ 363 (875)
...+..+. ....+++|||.-. .+.+
T Consensus 181 ~~il~~lp~~~~~q~ll~SATl~~-~v~~--------------------------------------------------- 208 (572)
T PRK04537 181 RFLLRRMPERGTRQTLLFSATLSH-RVLE--------------------------------------------------- 208 (572)
T ss_pred HHHHHhcccccCceEEEEeCCccH-HHHH---------------------------------------------------
Confidence 23334443 3456889999421 1110
Q ss_pred HHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCC
Q 044036 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGC 443 (875)
Q Consensus 364 ~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (875)
+...++.. | ..++ +.... ...
T Consensus 209 -l~~~~l~~-----------p---~~i~-v~~~~--------~~~----------------------------------- 229 (572)
T PRK04537 209 -LAYEHMNE-----------P---EKLV-VETET--------ITA----------------------------------- 229 (572)
T ss_pred -HHHHHhcC-----------C---cEEE-ecccc--------ccc-----------------------------------
Confidence 00000000 0 0000 00000 000
Q ss_pred CCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHH
Q 044036 444 DSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEK 523 (875)
Q Consensus 444 ~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~ 523 (875)
..+ .+ .++. .....|+..|..
T Consensus 230 ------------~~i----~q-~~~~------------------------------------------~~~~~k~~~L~~ 250 (572)
T PRK04537 230 ------------ARV----RQ-RIYF------------------------------------------PADEEKQTLLLG 250 (572)
T ss_pred ------------cce----eE-EEEe------------------------------------------cCHHHHHHHHHH
Confidence 000 00 0000 001126666777
Q ss_pred HHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCC
Q 044036 524 LMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSA 603 (875)
Q Consensus 524 LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~A 603 (875)
++.. ..+.++|||+++...++.|...|...|+.+..++|.+++.+|..+++.|+++... +||+|+++++|||+..+
T Consensus 251 ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~--VLVaTdv~arGIDip~V 326 (572)
T PRK04537 251 LLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE--ILVATDVAARGLHIDGV 326 (572)
T ss_pred HHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEehhhhcCCCccCC
Confidence 7654 3578999999999999999999999999999999999999999999999986543 89999999999999999
Q ss_pred CEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 604 NRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 604 n~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
++||+||.+|++..|.|++||++|.|....+ +.|++.
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 9999999999999999999999999987554 445544
No 33
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=5.6e-25 Score=253.54 Aligned_cols=316 Identities=14% Similarity=0.148 Sum_probs=213.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+.++|.+++..+++ +.++|+...+|+|||+.++..+...+..... ......++|||+|. .|+.||
T Consensus 23 ~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~---------~~~~~~~~lil~Pt~eLa~Q~ 89 (434)
T PRK11192 23 RPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPR---------RKSGPPRILILTPTRELAMQV 89 (434)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccc---------cCCCCceEEEECCcHHHHHHH
Confidence 467899999998775 7789999999999999876554443221100 01234579999996 577888
Q ss_pred HHHHHHhc---CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHHH
Q 044036 215 EIEFSRWS---TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKLY 287 (875)
Q Consensus 215 ~~E~~k~~---~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~~ 287 (875)
.+.+..|. +.++..++|.............+.+|+|+|++.+.... ..+....+++||+||||++.... ....
T Consensus 90 ~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~ 169 (434)
T PRK11192 90 ADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIE 169 (434)
T ss_pred HHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHH
Confidence 77776664 47888888875544444444567899999998775332 22333457899999999986543 1222
Q ss_pred HHHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHH
Q 044036 288 MACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVL 366 (875)
Q Consensus 288 kal~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L 366 (875)
..+..+. ....+++|||+-...+.++ ...+
T Consensus 170 ~i~~~~~~~~q~~~~SAT~~~~~~~~~------------------~~~~------------------------------- 200 (434)
T PRK11192 170 TIAAETRWRKQTLLFSATLEGDAVQDF------------------AERL------------------------------- 200 (434)
T ss_pred HHHHhCccccEEEEEEeecCHHHHHHH------------------HHHH-------------------------------
Confidence 2223332 2455899999732111110 0000
Q ss_pred HHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCC
Q 044036 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSC 446 (875)
Q Consensus 367 ~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (875)
+... ..+.+....... ..+
T Consensus 201 ----------------~~~~--~~i~~~~~~~~~---~~i---------------------------------------- 219 (434)
T PRK11192 201 ----------------LNDP--VEVEAEPSRRER---KKI---------------------------------------- 219 (434)
T ss_pred ----------------ccCC--EEEEecCCcccc---cCc----------------------------------------
Confidence 0000 000000000000 000
Q ss_pred CccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHH
Q 044036 447 PFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMY 526 (875)
Q Consensus 447 ~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~ 526 (875)
.+..... .....|...|..++.
T Consensus 220 ----------------~~~~~~~------------------------------------------~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 220 ----------------HQWYYRA------------------------------------------DDLEHKTALLCHLLK 241 (434)
T ss_pred ----------------eEEEEEe------------------------------------------CCHHHHHHHHHHHHh
Confidence 0000000 000136666777765
Q ss_pred HhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEE
Q 044036 527 SWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRV 606 (875)
Q Consensus 527 ~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~V 606 (875)
. ....++|||+++...++.|...|...|+.+..++|.+++.+|..+++.|+++... +||+|+++++|||+.++++|
T Consensus 242 ~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~--vLVaTd~~~~GiDip~v~~V 317 (434)
T PRK11192 242 Q--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN--VLVATDVAARGIDIDDVSHV 317 (434)
T ss_pred c--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc--EEEEccccccCccCCCCCEE
Confidence 3 2567999999999999999999999999999999999999999999999986543 89999999999999999999
Q ss_pred EEcCCCCCchhHHHhhhcccccCCcceEEE
Q 044036 607 VIFDPNWNPAQDLQAQDRSFRFGQKRHVIV 636 (875)
Q Consensus 607 I~~D~~WNp~~~~QaigR~~RiGQ~k~V~V 636 (875)
|+||+++++..|.||+||++|.|....+.+
T Consensus 318 I~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 318 INFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred EEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 999999999999999999999998765543
No 34
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=7.6e-25 Score=253.28 Aligned_cols=320 Identities=17% Similarity=0.187 Sum_probs=211.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+.|+|.+++..++. +.++|+..++|+|||+..+..+...+...... ........+|||||. .|+.||
T Consensus 23 ~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~-------~~~~~~~~aLil~PtreLa~Qi 91 (456)
T PRK10590 23 EPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPH-------AKGRRPVRALILTPTRELAAQI 91 (456)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-------cccCCCceEEEEeCcHHHHHHH
Confidence 578899999998775 78899999999999999766555544322100 001123469999996 678899
Q ss_pred HHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCccccCccc--HHH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHRLKNEKS--KLY 287 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~ikn~~S--~~~ 287 (875)
.+++..+.. +.+..+.|.............+++|+|+|++.+... ...+..-..++||+||||++-.... .+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~ 171 (456)
T PRK10590 92 GENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIR 171 (456)
T ss_pred HHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHH
Confidence 999888754 556666665433222222245789999999887532 1222334578999999999865432 233
Q ss_pred HHHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHH
Q 044036 288 MACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVL 366 (875)
Q Consensus 288 kal~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L 366 (875)
..+..+. ....+++|||+-. ...+ +...
T Consensus 172 ~il~~l~~~~q~l~~SAT~~~-~~~~---l~~~----------------------------------------------- 200 (456)
T PRK10590 172 RVLAKLPAKRQNLLFSATFSD-DIKA---LAEK----------------------------------------------- 200 (456)
T ss_pred HHHHhCCccCeEEEEeCCCcH-HHHH---HHHH-----------------------------------------------
Confidence 3444453 3457899999521 1111 0000
Q ss_pred HHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCC
Q 044036 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSC 446 (875)
Q Consensus 367 ~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (875)
++ .... . +.+.-... ...
T Consensus 201 --~~-------------~~~~-~-i~~~~~~~-------~~~-------------------------------------- 218 (456)
T PRK10590 201 --LL-------------HNPL-E-IEVARRNT-------ASE-------------------------------------- 218 (456)
T ss_pred --Hc-------------CCCe-E-EEEecccc-------ccc--------------------------------------
Confidence 00 0000 0 00000000 000
Q ss_pred CccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHH
Q 044036 447 PFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMY 526 (875)
Q Consensus 447 ~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~ 526 (875)
.+..+... .....|...|..++.
T Consensus 219 -------------~i~~~~~~--------------------------------------------~~~~~k~~~l~~l~~ 241 (456)
T PRK10590 219 -------------QVTQHVHF--------------------------------------------VDKKRKRELLSQMIG 241 (456)
T ss_pred -------------ceeEEEEE--------------------------------------------cCHHHHHHHHHHHHH
Confidence 00000000 000013444555554
Q ss_pred HhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEE
Q 044036 527 SWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRV 606 (875)
Q Consensus 527 ~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~V 606 (875)
. ....++|||++.....+.|...|...|+.+..++|.+++.+|.++++.|+++... +||+|+++++|||+.++++|
T Consensus 242 ~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~--iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 242 K--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR--VLVATDIAARGLDIEELPHV 317 (456)
T ss_pred c--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc--EEEEccHHhcCCCcccCCEE
Confidence 3 2457999999999999999999999999999999999999999999999987543 88999999999999999999
Q ss_pred EEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 607 VIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 607 I~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
|+||+|.++..|.|++||++|.|.+..+ +.|++.
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~a--i~l~~~ 351 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEA--LSLVCV 351 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeE--EEEecH
Confidence 9999999999999999999999987654 444543
No 35
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=8.6e-25 Score=254.41 Aligned_cols=321 Identities=17% Similarity=0.247 Sum_probs=215.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHH-HHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA-AVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~-~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
.++|||.+++..++. +++.|+...+|+|||+..+..+. .+....... ........+|||+|. .|..|
T Consensus 109 ~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~-------~~~~~~~~aLil~PtreLa~Q 177 (475)
T PRK01297 109 YCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK-------ERYMGEPRALIIAPTRELVVQ 177 (475)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCccc-------ccccCCceEEEEeCcHHHHHH
Confidence 588999999987765 88999999999999988654443 333221100 001124679999995 67888
Q ss_pred HHHHHHHhc---CCcEEEEeCCC-hhHHHHHHHhCCceEEEeeccccccccc--ccccccccEEEEcCCccccCccc--H
Q 044036 214 WEIEFSRWS---TFNVSIYHGPN-RDMILEKLEACGVEVLITSFDSYRIHGS--ILSEVNWEIVIVDEAHRLKNEKS--K 285 (875)
Q Consensus 214 W~~E~~k~~---~~~v~v~~G~~-r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l~~~~w~~VIiDEAH~ikn~~S--~ 285 (875)
|.+++..+. ++++..++|.. .......+.....+|+|+|++++..... .+.--+.++|||||||++.+..- .
T Consensus 178 ~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~ 257 (475)
T PRK01297 178 IAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQ 257 (475)
T ss_pred HHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHH
Confidence 888887764 36777777763 3344455556678999999998853221 12223468999999999976432 1
Q ss_pred HHHHHHhcc---ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHH
Q 044036 286 LYMACLELK---TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362 (875)
Q Consensus 286 ~~kal~~l~---~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L 362 (875)
..+.+..+. ....+++|||.-. ++.++
T Consensus 258 l~~i~~~~~~~~~~q~i~~SAT~~~-~~~~~------------------------------------------------- 287 (475)
T PRK01297 258 VRQIIRQTPRKEERQTLLFSATFTD-DVMNL------------------------------------------------- 287 (475)
T ss_pred HHHHHHhCCCCCCceEEEEEeecCH-HHHHH-------------------------------------------------
Confidence 233334332 3467899999421 11110
Q ss_pred HHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCC
Q 044036 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDG 442 (875)
Q Consensus 363 ~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (875)
...++. .| ..+.+..... .. . +
T Consensus 288 ---~~~~~~-----------~~----~~v~~~~~~~--------~~---------~--------------------~--- 309 (475)
T PRK01297 288 ---AKQWTT-----------DP----AIVEIEPENV--------AS---------D--------------------T--- 309 (475)
T ss_pred ---HHHhcc-----------CC----EEEEeccCcC--------CC---------C--------------------c---
Confidence 000000 00 0111000000 00 0 0
Q ss_pred CCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHH
Q 044036 443 CDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALE 522 (875)
Q Consensus 443 ~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~ 522 (875)
+..+.. ....+.|...|.
T Consensus 310 ------------------~~~~~~--------------------------------------------~~~~~~k~~~l~ 327 (475)
T PRK01297 310 ------------------VEQHVY--------------------------------------------AVAGSDKYKLLY 327 (475)
T ss_pred ------------------ccEEEE--------------------------------------------EecchhHHHHHH
Confidence 000000 001123666677
Q ss_pred HHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCC
Q 044036 523 KLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVS 602 (875)
Q Consensus 523 ~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~ 602 (875)
.++.. ....++|||+++...++.|...|...|+.+..++|.++..+|.++++.|+++... +||+|+++++|||+.+
T Consensus 328 ~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~--vLvaT~~l~~GIDi~~ 403 (475)
T PRK01297 328 NLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR--VLVATDVAGRGIHIDG 403 (475)
T ss_pred HHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc--EEEEccccccCCcccC
Confidence 77764 2457999999999999999999999999999999999999999999999987543 8899999999999999
Q ss_pred CCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 603 ANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 603 An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
++.||+||+++|+..+.|++||++|.|+.-. ++.|+..+
T Consensus 404 v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 404 ISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred CCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 9999999999999999999999999998654 44455543
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=7.9e-25 Score=253.93 Aligned_cols=304 Identities=16% Similarity=0.202 Sum_probs=210.9
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..++|+|.+++.-++. ++.+++..++|.|||+..+..+.. ..+.+|||+|. .|+.+
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~-------------------~~~~~lVi~P~~~L~~d 66 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC-------------------SDGITLVISPLISLMED 66 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH-------------------cCCcEEEEecHHHHHHH
Confidence 3689999999998776 778999999999999875443321 24568999995 67888
Q ss_pred HHHHHHHhcCCcEEEEeCCChhH----HHHHHHhCCceEEEeeccccccccc---cc-ccccccEEEEcCCccccCcccH
Q 044036 214 WEIEFSRWSTFNVSIYHGPNRDM----ILEKLEACGVEVLITSFDSYRIHGS---IL-SEVNWEIVIVDEAHRLKNEKSK 285 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~~G~~r~~----~~~~~~~~~~~VvItTy~~l~~~~~---~l-~~~~w~~VIiDEAH~ikn~~S~ 285 (875)
|...+... +..+..+.|..... ....+..+.++|+++|++.+..... .+ ...+..+|||||||.+......
T Consensus 67 q~~~l~~~-gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 67 QVLQLKAS-GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 98888764 34556666654332 3445556778999999998764332 22 3346799999999998654321
Q ss_pred -------HHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHH
Q 044036 286 -------LYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADER 358 (875)
Q Consensus 286 -------~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~ 358 (875)
+......+.....++|||||-.....++...+.+-.|
T Consensus 146 fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~------------------------------------ 189 (470)
T TIGR00614 146 FRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNP------------------------------------ 189 (470)
T ss_pred cHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCC------------------------------------
Confidence 1122233456678999999853322222222111111
Q ss_pred HHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhcc
Q 044036 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLD 438 (875)
Q Consensus 359 ~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 438 (875)
. +++. + ....
T Consensus 190 ------------------------------~-~~~~-s----------~~r~---------------------------- 199 (470)
T TIGR00614 190 ------------------------------Q-IFCT-S----------FDRP---------------------------- 199 (470)
T ss_pred ------------------------------c-EEeC-C----------CCCC----------------------------
Confidence 0 0000 0 0000
Q ss_pred CCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchH
Q 044036 439 NLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKM 518 (875)
Q Consensus 439 ~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl 518 (875)
+ -...+. .....++
T Consensus 200 n------------------------l~~~v~------------------------------------------~~~~~~~ 213 (470)
T TIGR00614 200 N------------------------LYYEVR------------------------------------------RKTPKIL 213 (470)
T ss_pred C------------------------cEEEEE------------------------------------------eCCccHH
Confidence 0 000000 0000123
Q ss_pred HHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCccccc
Q 044036 519 RALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGL 598 (875)
Q Consensus 519 ~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GL 598 (875)
..+..++.. ...+.++|||+.+....+.+...|...|+.+..++|+++..+|..+++.|.++... +|++|.+.|+||
T Consensus 214 ~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~--vLVaT~~~~~GI 290 (470)
T TIGR00614 214 EDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ--VVVATVAFGMGI 290 (470)
T ss_pred HHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc--EEEEechhhccC
Confidence 334444433 23567889999999999999999999999999999999999999999999976543 889999999999
Q ss_pred CCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEE
Q 044036 599 NLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVF 637 (875)
Q Consensus 599 NL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~Vy 637 (875)
|+++++.||+||+|.++..+.|++||++|.|+...+.+|
T Consensus 291 D~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 291 NKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999999999999999988766543
No 37
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.94 E-value=8.9e-25 Score=255.89 Aligned_cols=322 Identities=14% Similarity=0.172 Sum_probs=214.3
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHH-HHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA-AVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~-~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
.+.|+|..++..++. +++.|+..++|+|||+..+..+. .++..... .........+|||+|. .|+.|
T Consensus 143 ~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~-------~~~~~~~~~aLIL~PTreLa~Q 211 (518)
T PLN00206 143 FPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSG-------HPSEQRNPLAMVLTPTRELCVQ 211 (518)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccc-------cccccCCceEEEEeCCHHHHHH
Confidence 578999999998775 88999999999999998665443 33221100 0011245679999996 57788
Q ss_pred HHHHHHHhcC---CcEEEE-eCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cH
Q 044036 214 WEIEFSRWST---FNVSIY-HGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SK 285 (875)
Q Consensus 214 W~~E~~k~~~---~~v~v~-~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~ 285 (875)
+.+++..+.. +++..+ .|.........+ ..+++|+|+|++.+.... ..+..-+..+||+||||++.... ..
T Consensus 212 i~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l-~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~ 290 (518)
T PLN00206 212 VEDQAKVLGKGLPFKTALVVGGDAMPQQLYRI-QQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQ 290 (518)
T ss_pred HHHHHHHHhCCCCceEEEEECCcchHHHHHHh-cCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHH
Confidence 8888887754 444444 444443333333 346799999998764321 12223356899999999986543 23
Q ss_pred HHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHH
Q 044036 286 LYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365 (875)
Q Consensus 286 ~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~ 365 (875)
..+.+..+.....+++|||.-. ... .+..++.
T Consensus 291 i~~i~~~l~~~q~l~~SATl~~-~v~---~l~~~~~-------------------------------------------- 322 (518)
T PLN00206 291 VMQIFQALSQPQVLLFSATVSP-EVE---KFASSLA-------------------------------------------- 322 (518)
T ss_pred HHHHHHhCCCCcEEEEEeeCCH-HHH---HHHHHhC--------------------------------------------
Confidence 4455566677788999999521 110 0000000
Q ss_pred HHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCC
Q 044036 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDS 445 (875)
Q Consensus 366 L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (875)
+ ....+.+.-... .. .
T Consensus 323 ------~--------------~~~~i~~~~~~~--------~~-----------------------------------~- 338 (518)
T PLN00206 323 ------K--------------DIILISIGNPNR--------PN-----------------------------------K- 338 (518)
T ss_pred ------C--------------CCEEEEeCCCCC--------CC-----------------------------------c-
Confidence 0 000010000000 00 0
Q ss_pred CCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHH
Q 044036 446 CPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525 (875)
Q Consensus 446 ~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL 525 (875)
.+ .+.... .....|...|.++|
T Consensus 339 -----------~v----~q~~~~-------------------------------------------~~~~~k~~~l~~~l 360 (518)
T PLN00206 339 -----------AV----KQLAIW-------------------------------------------VETKQKKQKLFDIL 360 (518)
T ss_pred -----------ce----eEEEEe-------------------------------------------ccchhHHHHHHHHH
Confidence 00 000000 00112445566666
Q ss_pred HHhhcCCCeEEEEecchhHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCC
Q 044036 526 YSWASKGDKILLFSYSVRMLDILEKFLIR-KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSAN 604 (875)
Q Consensus 526 ~~~~~~g~KVLIFs~~~~~ld~L~~~L~~-~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An 604 (875)
........++|||++....++.|...|.. .|+.+..++|++++.+|..+++.|.++... +||+|+++++|||+..++
T Consensus 361 ~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~--ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 361 KSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP--VIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC--EEEEecHhhccCCcccCC
Confidence 65444456899999999999999999975 699999999999999999999999987554 899999999999999999
Q ss_pred EEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 605 RVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 605 ~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
+||+||+|.++..|.|++||++|.|..- .++.|++.+
T Consensus 439 ~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 439 QVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred EEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 9999999999999999999999999754 445566553
No 38
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5.2e-25 Score=246.46 Aligned_cols=313 Identities=19% Similarity=0.247 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHH-HHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHHHHH
Q 044036 139 EHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTI-AFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQNWEI 216 (875)
Q Consensus 139 pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqai-all~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~qW~~ 216 (875)
|-|..+...++. |+.+|....+|+|||+..+ -.+.++....+. ........+||++|+. |..|-..
T Consensus 116 pIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~--------~~~~~~P~vLVL~PTRELA~QV~~ 183 (519)
T KOG0331|consen 116 PIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGK--------LSRGDGPIVLVLAPTRELAVQVQA 183 (519)
T ss_pred hhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhcccc--------ccCCCCCeEEEEcCcHHHHHHHHH
Confidence 337766666655 8999999999999999944 444444331111 1123455699999975 6677788
Q ss_pred HHHHhcC---C-cEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccC--cccHHHH
Q 044036 217 EFSRWST---F-NVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKN--EKSKLYM 288 (875)
Q Consensus 217 E~~k~~~---~-~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn--~~S~~~k 288 (875)
++..++. + .+++|.|.........+ ..+.+|+|+|+..+.... ..+..-+..++|+|||.++-. ...++-+
T Consensus 184 ~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l-~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~ 262 (519)
T KOG0331|consen 184 EAREFGKSLRLRSTCVYGGAPKGPQLRDL-ERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRK 262 (519)
T ss_pred HHHHHcCCCCccEEEEeCCCCccHHHHHH-hcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHH
Confidence 8888866 3 34555555554444444 457899999999887543 344445678999999999955 3566777
Q ss_pred HHHhc-cccc-eEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHH
Q 044036 289 ACLEL-KTRN-RIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVL 366 (875)
Q Consensus 289 al~~l-~~~~-rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L 366 (875)
.+..+ ++.+ .++.|||= -. ..+.+-
T Consensus 263 Il~~i~~~~rQtlm~saTw--------------------------p~---------------------------~v~~lA 289 (519)
T KOG0331|consen 263 ILSQIPRPDRQTLMFSATW--------------------------PK---------------------------EVRQLA 289 (519)
T ss_pred HHHhcCCCcccEEEEeeec--------------------------cH---------------------------HHHHHH
Confidence 77777 4443 57777771 00 011111
Q ss_pred HHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCC
Q 044036 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSC 446 (875)
Q Consensus 367 ~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (875)
..|+ .. +....+... ..+. .
T Consensus 290 ~~fl---------~~---~~~i~ig~~---~~~~-a-------------------------------------------- 309 (519)
T KOG0331|consen 290 EDFL---------NN---PIQINVGNK---KELK-A-------------------------------------------- 309 (519)
T ss_pred HHHh---------cC---ceEEEecch---hhhh-h--------------------------------------------
Confidence 1221 10 011111111 0000 0
Q ss_pred CccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHH
Q 044036 447 PFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMY 526 (875)
Q Consensus 447 ~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~ 526 (875)
...++|++. ......|...|..+|.
T Consensus 310 --------~~~i~qive-----------------------------------------------~~~~~~K~~~l~~lL~ 334 (519)
T KOG0331|consen 310 --------NHNIRQIVE-----------------------------------------------VCDETAKLRKLGKLLE 334 (519)
T ss_pred --------hcchhhhhh-----------------------------------------------hcCHHHHHHHHHHHHH
Confidence 000000000 0112258888999999
Q ss_pred Hhh-cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCE
Q 044036 527 SWA-SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANR 605 (875)
Q Consensus 527 ~~~-~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~ 605 (875)
.+. ..+.||||||+....++.|...|...+++...|||..++.+|..+++.|.++... +|++|+++++|||+.+.+.
T Consensus 335 ~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~--vLVATdVAaRGLDi~dV~l 412 (519)
T KOG0331|consen 335 DISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSP--VLVATDVAARGLDVPDVDL 412 (519)
T ss_pred HHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcc--eEEEcccccccCCCccccE
Confidence 876 4567999999999999999999999999999999999999999999999998765 9999999999999999999
Q ss_pred EEEcCCCCCchhHHHhhhcccccCCcceE
Q 044036 606 VVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634 (875)
Q Consensus 606 VI~~D~~WNp~~~~QaigR~~RiGQ~k~V 634 (875)
||+||+|-|...|.||+||.+|-|++-..
T Consensus 413 VInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 413 VINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred EEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 99999999999999999999998887544
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=3.2e-24 Score=254.37 Aligned_cols=310 Identities=17% Similarity=0.169 Sum_probs=212.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+.|+|.+++..++. ++..|+..++|+|||++.+..+...+.. ......+|||||. .|+.||
T Consensus 28 ~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~-------------~~~~~~~LIL~PTreLa~Qv 90 (629)
T PRK11634 28 KPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDP-------------ELKAPQILVLAPTRELAVQV 90 (629)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhh-------------ccCCCeEEEEeCcHHHHHHH
Confidence 578899999998775 7889999999999999865444333211 1134578999996 678999
Q ss_pred HHHHHHhc----CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHH
Q 044036 215 EIEFSRWS----TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKL 286 (875)
Q Consensus 215 ~~E~~k~~----~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~ 286 (875)
.+++.+|. ..++..++|.............+.+|+|+|+..+..+. ..+.--+..+|||||||.+-+.. ..+
T Consensus 91 ~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di 170 (629)
T PRK11634 91 AEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDV 170 (629)
T ss_pred HHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHH
Confidence 99988774 36666666655433322233456899999998875432 22333456889999999986543 234
Q ss_pred HHHHHhccc-cceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHH
Q 044036 287 YMACLELKT-RNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365 (875)
Q Consensus 287 ~kal~~l~~-~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~ 365 (875)
...+..+.. ...+++|||.-. ... .+
T Consensus 171 ~~Il~~lp~~~q~llfSAT~p~-~i~----------------------------------------------------~i 197 (629)
T PRK11634 171 ETIMAQIPEGHQTALFSATMPE-AIR----------------------------------------------------RI 197 (629)
T ss_pred HHHHHhCCCCCeEEEEEccCCh-hHH----------------------------------------------------HH
Confidence 445555543 456888999411 000 00
Q ss_pred HHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCC
Q 044036 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDS 445 (875)
Q Consensus 366 L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (875)
...|+ ... ..+.+.-.. ...
T Consensus 198 ~~~~l-------------~~~--~~i~i~~~~---------~~~------------------------------------ 217 (629)
T PRK11634 198 TRRFM-------------KEP--QEVRIQSSV---------TTR------------------------------------ 217 (629)
T ss_pred HHHHc-------------CCC--eEEEccCcc---------ccC------------------------------------
Confidence 11110 000 001000000 000
Q ss_pred CCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHH
Q 044036 446 CPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525 (875)
Q Consensus 446 ~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL 525 (875)
+. ..+.+.. .....|...|..+|
T Consensus 218 -~~-------------i~q~~~~-------------------------------------------v~~~~k~~~L~~~L 240 (629)
T PRK11634 218 -PD-------------ISQSYWT-------------------------------------------VWGMRKNEALVRFL 240 (629)
T ss_pred -Cc-------------eEEEEEE-------------------------------------------echhhHHHHHHHHH
Confidence 00 0000000 00113677777777
Q ss_pred HHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCE
Q 044036 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANR 605 (875)
Q Consensus 526 ~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~ 605 (875)
... ...++||||+.....+.|...|...|+.+..++|.+++.+|..++++|+++... +||+|+++++|||+..+++
T Consensus 241 ~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~--ILVATdv~arGIDip~V~~ 316 (629)
T PRK11634 241 EAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD--ILIATDVAARGLDVERISL 316 (629)
T ss_pred Hhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC--EEEEcchHhcCCCcccCCE
Confidence 653 457899999999999999999999999999999999999999999999986544 8999999999999999999
Q ss_pred EEEcCCCCCchhHHHhhhcccccCCcceEEE
Q 044036 606 VVIFDPNWNPAQDLQAQDRSFRFGQKRHVIV 636 (875)
Q Consensus 606 VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~V 636 (875)
||+||+|.++..|.|++||++|.|..-.+.+
T Consensus 317 VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 317 VVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred EEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 9999999999999999999999998654433
No 40
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=6.1e-24 Score=242.65 Aligned_cols=318 Identities=19% Similarity=0.263 Sum_probs=210.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+.|+|..++..+++ +.+.|+..++|+|||+.++..+...+.. ......+|||+|. .|+.|+
T Consensus 50 ~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~-------------~~~~~~~lil~Pt~~L~~Q~ 112 (401)
T PTZ00424 50 KPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDY-------------DLNACQALILAPTRELAQQI 112 (401)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcC-------------CCCCceEEEECCCHHHHHHH
Confidence 588899999998776 7889999999999999876555544321 1134579999996 577888
Q ss_pred HHHHHHhcC---CcEEEEeCCChh-HHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCccccCcc--cHH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRD-MILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHRLKNEK--SKL 286 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~-~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~ikn~~--S~~ 286 (875)
.+.+..++. ..+....|.... .....+ ..+.+|+|+|++.+... ...+..-++++||+||||++.... ...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~ 191 (401)
T PTZ00424 113 QKVVLALGDYLKVRCHACVGGTVVRDDINKL-KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQI 191 (401)
T ss_pred HHHHHHHhhhcCceEEEEECCcCHHHHHHHH-cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHH
Confidence 777776654 445555555432 222333 34568999999876432 122233467899999999986533 334
Q ss_pred HHHHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHH
Q 044036 287 YMACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365 (875)
Q Consensus 287 ~kal~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~ 365 (875)
...+..+. ....+++|||+-. ...+ +
T Consensus 192 ~~i~~~~~~~~~~i~~SAT~~~-~~~~----------------------------------------------------~ 218 (401)
T PTZ00424 192 YDVFKKLPPDVQVALFSATMPN-EILE----------------------------------------------------L 218 (401)
T ss_pred HHHHhhCCCCcEEEEEEecCCH-HHHH----------------------------------------------------H
Confidence 45555553 3467899999621 1110 0
Q ss_pred HHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCC
Q 044036 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDS 445 (875)
Q Consensus 366 L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (875)
...++ +. + ..+.+.-.... .. +
T Consensus 219 ~~~~~-~~-----------~---~~~~~~~~~~~-------~~---------------------------------~--- 240 (401)
T PTZ00424 219 TTKFM-RD-----------P---KRILVKKDELT-------LE---------------------------------G--- 240 (401)
T ss_pred HHHHc-CC-----------C---EEEEeCCCCcc-------cC---------------------------------C---
Confidence 00000 00 0 00000000000 00 0
Q ss_pred CCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHH
Q 044036 446 CPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525 (875)
Q Consensus 446 ~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL 525 (875)
++ +..... .....|...+..++
T Consensus 241 ------------~~----~~~~~~------------------------------------------~~~~~~~~~l~~~~ 262 (401)
T PTZ00424 241 ------------IR----QFYVAV------------------------------------------EKEEWKFDTLCDLY 262 (401)
T ss_pred ------------ce----EEEEec------------------------------------------ChHHHHHHHHHHHH
Confidence 00 000000 00001334444444
Q ss_pred HHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCE
Q 044036 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANR 605 (875)
Q Consensus 526 ~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~ 605 (875)
... ...++|||++....++.+...|...++.+..++|+++..+|..+++.|+++... +|++|++.++|+|++.++.
T Consensus 263 ~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~--vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 263 ETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR--VLITTDLLARGIDVQQVSL 338 (401)
T ss_pred Hhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEEcccccCCcCcccCCE
Confidence 432 456899999999999999999999999999999999999999999999987544 8899999999999999999
Q ss_pred EEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHH
Q 044036 606 VVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLE 646 (875)
Q Consensus 606 VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiE 646 (875)
||+||++.++..+.|++||++|.|..- .++.|++....+
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G--~~i~l~~~~~~~ 377 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKG--VAINFVTPDDIE 377 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCc--eEEEEEcHHHHH
Confidence 999999999999999999999998654 456677655433
No 41
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.9e-24 Score=227.11 Aligned_cols=319 Identities=20% Similarity=0.256 Sum_probs=228.1
Q ss_pred ccCCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHH-HHHHHHHHhcCCCCCcchhhcccccCCCCcEEEE
Q 044036 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQ-TIAFLAAVFGKDESSDSTILKDNKVDKKGYVLII 205 (875)
Q Consensus 127 ~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiq-aiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV 205 (875)
+..|..| |.+++..++. ++.+|.+.++|+|||.. +|-++..+++.. ....+||+
T Consensus 81 ~~~PT~I-------Q~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p--------------~~~~~lVL 135 (476)
T KOG0330|consen 81 WKKPTKI-------QSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEP--------------KLFFALVL 135 (476)
T ss_pred cCCCchh-------hhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCC--------------CCceEEEe
Confidence 4555555 9999998887 89999999999999999 666777776532 34679999
Q ss_pred cCcch-HHHHHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc---ccccccccEEEEcCCcc
Q 044036 206 CPSSV-IQNWEIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS---ILSEVNWEIVIVDEAHR 278 (875)
Q Consensus 206 ~P~sL-l~qW~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~---~l~~~~w~~VIiDEAH~ 278 (875)
+|+.- ..|....|...+. +.+.++-|.........-....++|+|+|+..+..+.. .++.-...++|+|||++
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr 215 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR 215 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh
Confidence 99865 5556666777754 77877777765544444445578999999998876543 34444567899999999
Q ss_pred ccCcc--cHHHHHHHhccccc-eEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHH
Q 044036 279 LKNEK--SKLYMACLELKTRN-RIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIA 355 (875)
Q Consensus 279 ikn~~--S~~~kal~~l~~~~-rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~ 355 (875)
+.|.+ -...+.+..++..+ .++.|||-- .+
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt-~k---------------------------------------------- 248 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMT-KK---------------------------------------------- 248 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecc-hh----------------------------------------------
Confidence 98753 34555666664433 366677721 00
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHh
Q 044036 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCK 435 (875)
Q Consensus 356 ~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 435 (875)
..++. ...++ .++-|..+. .|+.+
T Consensus 249 ------v~kL~-rasl~----------------~p~~v~~s~----ky~tv----------------------------- 272 (476)
T KOG0330|consen 249 ------VRKLQ-RASLD----------------NPVKVAVSS----KYQTV----------------------------- 272 (476)
T ss_pred ------hHHHH-hhccC----------------CCeEEeccc----hhcch-----------------------------
Confidence 00010 00000 001111111 11110
Q ss_pred hccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccC
Q 044036 436 RLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSC 515 (875)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 515 (875)
..|.| -+++.+ .-
T Consensus 273 --------------------~~lkQ----~ylfv~-------------------------------------------~k 285 (476)
T KOG0330|consen 273 --------------------DHLKQ----TYLFVP-------------------------------------------GK 285 (476)
T ss_pred --------------------HHhhh----heEecc-------------------------------------------cc
Confidence 00110 011110 11
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
-|-..|..||++. .|..+||||+...+.+.+.-+|...|+....++|.|++..|..+++.|+++... +|++|++|+
T Consensus 286 ~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~--iLv~TDVaS 361 (476)
T KOG0330|consen 286 DKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS--ILVCTDVAS 361 (476)
T ss_pred ccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc--EEEecchhc
Confidence 2556788888865 568999999999999999999999999999999999999999999999997554 999999999
Q ss_pred cccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHH
Q 044036 596 LGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLE 646 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiE 646 (875)
+|||++.++.||+||.|-+-..|++|.||+.|.| +.-.+..|++.-.+|
T Consensus 362 RGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 362 RGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred ccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 9999999999999999999999999999999999 777788999985444
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=2.4e-23 Score=248.49 Aligned_cols=299 Identities=19% Similarity=0.177 Sum_probs=212.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|+|.+++.-++. ++++++..++|.|||+.+...+.. ..+.+|||+|. +|+.++
T Consensus 13 ~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal~-------------------~~g~~lVisPl~sL~~dq 69 (591)
T TIGR01389 13 DFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPALL-------------------LKGLTVVISPLISLMKDQ 69 (591)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHHH-------------------cCCcEEEEcCCHHHHHHH
Confidence 689999999998776 789999999999999987544331 24568999995 788889
Q ss_pred HHHHHHhcCCcEEEEeCCChh----HHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCccccCccc----
Q 044036 215 EIEFSRWSTFNVSIYHGPNRD----MILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHRLKNEKS---- 284 (875)
Q Consensus 215 ~~E~~k~~~~~v~v~~G~~r~----~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~ikn~~S---- 284 (875)
...+... +..+..+++.... .....+..+.++++++|++.+... ...+...+..+|||||||.+.....
T Consensus 70 ~~~l~~~-gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 70 VDQLRAA-GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 8888875 4566666665332 334445567889999999987532 2334556789999999999864321
Q ss_pred ---HHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHH
Q 044036 285 ---KLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361 (875)
Q Consensus 285 ---~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 361 (875)
.+......+.....++||||+-.....++...+.+-.+.
T Consensus 149 ~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~-------------------------------------- 190 (591)
T TIGR01389 149 EYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADAN-------------------------------------- 190 (591)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCC--------------------------------------
Confidence 222333344455689999998533333222211110000
Q ss_pred HHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCC
Q 044036 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLD 441 (875)
Q Consensus 362 L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (875)
+++.-. .
T Consensus 191 -----------------------------~~~~~~-----------~--------------------------------- 197 (591)
T TIGR01389 191 -----------------------------EFITSF-----------D--------------------------------- 197 (591)
T ss_pred -----------------------------eEecCC-----------C---------------------------------
Confidence 000000 0
Q ss_pred CCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHH
Q 044036 442 GCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRAL 521 (875)
Q Consensus 442 ~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L 521 (875)
.+.+.. .......+...+
T Consensus 198 ----------------------r~nl~~----------------------------------------~v~~~~~~~~~l 215 (591)
T TIGR01389 198 ----------------------RPNLRF----------------------------------------SVVKKNNKQKFL 215 (591)
T ss_pred ----------------------CCCcEE----------------------------------------EEEeCCCHHHHH
Confidence 000000 000001244456
Q ss_pred HHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCC
Q 044036 522 EKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLV 601 (875)
Q Consensus 522 ~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~ 601 (875)
.++|... .+.++|||+++....+.+...|...|+++..+||+++.++|..+++.|.++.. .+||+|.+.|.|||++
T Consensus 216 ~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~--~vlVaT~a~~~GID~p 291 (591)
T TIGR01389 216 LDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDV--KVMVATNAFGMGIDKP 291 (591)
T ss_pred HHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCC--cEEEEechhhccCcCC
Confidence 6666543 37899999999999999999999999999999999999999999999998754 3899999999999999
Q ss_pred CCCEEEEcCCCCCchhHHHhhhcccccCCcceEE
Q 044036 602 SANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635 (875)
Q Consensus 602 ~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~ 635 (875)
+++.||+||+|+|+..+.|++||++|.|+...+.
T Consensus 292 ~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 292 NVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 9999999999999999999999999999766553
No 43
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=3.1e-23 Score=246.94 Aligned_cols=298 Identities=17% Similarity=0.199 Sum_probs=206.4
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|+|.+++.-++. ++.+++..++|.|||+.....+.. ..+.+|||+|. +|+.+|
T Consensus 25 ~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~-------------------~~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 25 QFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALV-------------------LDGLTLVVSPLISLMKDQ 81 (607)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHH-------------------cCCCEEEEecHHHHHHHH
Confidence 688999999997765 789999999999999876543332 23568999995 778888
Q ss_pred HHHHHHhcCCcEEEEeCCC-hh---HHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCccccCccc---H
Q 044036 215 EIEFSRWSTFNVSIYHGPN-RD---MILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHRLKNEKS---K 285 (875)
Q Consensus 215 ~~E~~k~~~~~v~v~~G~~-r~---~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~ikn~~S---~ 285 (875)
.+.+... +..+..+.+.. .. .....+..+..+++++|++.+... ...+...++++|||||||.+..... .
T Consensus 82 v~~l~~~-gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~ 160 (607)
T PRK11057 82 VDQLLAN-GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRP 160 (607)
T ss_pred HHHHHHc-CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccH
Confidence 8888765 34555555543 22 223344566788999999887632 2334445789999999999865321 1
Q ss_pred HHHHH----HhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHH
Q 044036 286 LYMAC----LELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361 (875)
Q Consensus 286 ~~kal----~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 361 (875)
.++.+ ..+.....++||||+-.....++...+.+-.|
T Consensus 161 ~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~--------------------------------------- 201 (607)
T PRK11057 161 EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP--------------------------------------- 201 (607)
T ss_pred HHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCe---------------------------------------
Confidence 22223 23345668999999754332232222211110
Q ss_pred HHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCC
Q 044036 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLD 441 (875)
Q Consensus 362 L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (875)
.++.. . ...+ +
T Consensus 202 ----------------------------~~~~~--~---------~~r~----------------------------n-- 212 (607)
T PRK11057 202 ----------------------------LIQIS--S---------FDRP----------------------------N-- 212 (607)
T ss_pred ----------------------------EEEEC--C---------CCCC----------------------------c--
Confidence 01000 0 0000 0
Q ss_pred CCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHH
Q 044036 442 GCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRAL 521 (875)
Q Consensus 442 ~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L 521 (875)
..+.+ .....++..|
T Consensus 213 ----------------------l~~~v-------------------------------------------~~~~~~~~~l 227 (607)
T PRK11057 213 ----------------------IRYTL-------------------------------------------VEKFKPLDQL 227 (607)
T ss_pred ----------------------ceeee-------------------------------------------eeccchHHHH
Confidence 00000 0000122334
Q ss_pred HHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCC
Q 044036 522 EKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLV 601 (875)
Q Consensus 522 ~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~ 601 (875)
...+.. ..+.++||||++...++.+...|...|+.+..++|+++.++|.++++.|..+... +||+|.+.|.|||++
T Consensus 228 ~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~--VLVaT~a~~~GIDip 303 (607)
T PRK11057 228 MRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ--IVVATVAFGMGINKP 303 (607)
T ss_pred HHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC--EEEEechhhccCCCC
Confidence 444433 3578999999999999999999999999999999999999999999999986543 889999999999999
Q ss_pred CCCEEEEcCCCCCchhHHHhhhcccccCCcceE
Q 044036 602 SANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634 (875)
Q Consensus 602 ~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V 634 (875)
+++.||+||+|.+...+.|++||++|.|....+
T Consensus 304 ~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred CcCEEEEeCCCCCHHHHHHHhhhccCCCCCceE
Confidence 999999999999999999999999999976554
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=3.6e-22 Score=238.90 Aligned_cols=305 Identities=17% Similarity=0.226 Sum_probs=204.1
Q ss_pred hhhhcccHHHHHHHHHHHHHhhCC--CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-
Q 044036 132 SINCRLLEHQREGVKFLYKLYKNK--HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS- 208 (875)
Q Consensus 132 ~i~~~L~pyQ~~gv~~l~~~~~~~--~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~- 208 (875)
.+...|.++|..++..++...... .+.+|.-++|+|||+.++..+...+. ....+||++|+
T Consensus 231 ~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~----------------~g~qvlilaPT~ 294 (630)
T TIGR00643 231 SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE----------------AGYQVALMAPTE 294 (630)
T ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH----------------cCCcEEEECCHH
Confidence 344579999999999998765433 35799999999999987665554432 34579999996
Q ss_pred chHHHHHHHHHHhcC---CcEEEEeCCChh----HHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccC
Q 044036 209 SVIQNWEIEFSRWST---FNVSIYHGPNRD----MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 209 sLl~qW~~E~~k~~~---~~v~v~~G~~r~----~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn 281 (875)
.|..||.+++.++++ .++.+++|.... .....+..+..+|+|+|+..+.... .-.+..+||+||+|++.-
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~ 371 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGV 371 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc---cccccceEEEechhhccH
Confidence 567999999999875 788889987533 3455566677899999998875432 223568999999999732
Q ss_pred cccHHHHHHHhcc---ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHH
Q 044036 282 EKSKLYMACLELK---TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADER 358 (875)
Q Consensus 282 ~~S~~~kal~~l~---~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~ 358 (875)
.++........ ..+.++|||||+...+.- ..+ +.+
T Consensus 372 --~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l----~~~---~~l--------------------------------- 409 (630)
T TIGR00643 372 --EQRKKLREKGQGGFTPHVLVMSATPIPRTLAL----TVY---GDL--------------------------------- 409 (630)
T ss_pred --HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHH----Hhc---CCc---------------------------------
Confidence 12222222333 577899999997532210 000 000
Q ss_pred HHHHHHHHHHHHHhhchhHHhhccCCCceeE-EEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhc
Q 044036 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDN-VVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRL 437 (875)
Q Consensus 359 ~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~-vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 437 (875)
....+...++..... ..++.-.
T Consensus 410 ----------------~~~~i~~~p~~r~~i~~~~~~~~----------------------------------------- 432 (630)
T TIGR00643 410 ----------------DTSIIDELPPGRKPITTVLIKHD----------------------------------------- 432 (630)
T ss_pred ----------------ceeeeccCCCCCCceEEEEeCcc-----------------------------------------
Confidence 000011111111000 0000000
Q ss_pred cCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCch
Q 044036 438 DNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGK 517 (875)
Q Consensus 438 ~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K 517 (875)
+
T Consensus 433 -------------------------------------------------------------------------------~ 433 (630)
T TIGR00643 433 -------------------------------------------------------------------------------E 433 (630)
T ss_pred -------------------------------------------------------------------------------h
Confidence 0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecch--------hHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEE
Q 044036 518 MRALEKLMYSWASKGDKILLFSYSV--------RMLDILEKFLIR--KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVF 587 (875)
Q Consensus 518 l~~L~~LL~~~~~~g~KVLIFs~~~--------~~ld~L~~~L~~--~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~ 587 (875)
...+...+.+....+++++||+... ..+..+...|.. .++.+..++|.++.++|.+++++|.++... +
T Consensus 434 ~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~--I 511 (630)
T TIGR00643 434 KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVD--I 511 (630)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--E
Confidence 1122223333334677888888654 233344455543 478899999999999999999999987554 8
Q ss_pred EEecCCcccccCCCCCCEEEEcCCCC-CchhHHHhhhcccccCCcceEE
Q 044036 588 LISTRAGGLGLNLVSANRVVIFDPNW-NPAQDLQAQDRSFRFGQKRHVI 635 (875)
Q Consensus 588 LiSt~agg~GLNL~~An~VI~~D~~W-Np~~~~QaigR~~RiGQ~k~V~ 635 (875)
||+|.+.++|+|+++++.||++|++. +-+.+.|++||++|-|....+.
T Consensus 512 LVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 512 LVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred EEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 99999999999999999999999984 7788999999999998765443
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.91 E-value=2.1e-22 Score=241.79 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=96.8
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCC
Q 044036 532 GDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDP 611 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~ 611 (875)
+...||||.+...++.+...|...|+.+..++|+++..+|..++++|..+... +||+|.+.|.|||+.+.+.||+||+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~--VLVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN--IICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc--EEEEechhhcCCCccCCcEEEEcCC
Confidence 46789999999999999999999999999999999999999999999987544 8899999999999999999999999
Q ss_pred CCCchhHHHhhhcccccCCcceEEEE
Q 044036 612 NWNPAQDLQAQDRSFRFGQKRHVIVF 637 (875)
Q Consensus 612 ~WNp~~~~QaigR~~RiGQ~k~V~Vy 637 (875)
|.++..|.|++||++|.|+.-.+..|
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEE
Confidence 99999999999999999998666544
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=4.5e-22 Score=239.57 Aligned_cols=307 Identities=17% Similarity=0.187 Sum_probs=207.7
Q ss_pred hhhcccHHHHHHHHHHHHHhhCC--CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-c
Q 044036 133 INCRLLEHQREGVKFLYKLYKNK--HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-S 209 (875)
Q Consensus 133 i~~~L~pyQ~~gv~~l~~~~~~~--~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-s 209 (875)
+...|.++|..++.-+......+ .+.+|.-++|+|||+.++..+...+. ....+||++|+ .
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~----------------~g~q~lilaPT~~ 321 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE----------------AGYQAALMAPTEI 321 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH----------------cCCeEEEEeccHH
Confidence 45579999999999988765433 36799999999999998766654432 34579999996 5
Q ss_pred hHHHHHHHHHHhcC---CcEEEEeCCCh----hHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCc
Q 044036 210 VIQNWEIEFSRWST---FNVSIYHGPNR----DMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNE 282 (875)
Q Consensus 210 Ll~qW~~E~~k~~~---~~v~v~~G~~r----~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~ 282 (875)
|..|+.+.+.+++. .++.+++|... ......+..+..+|+|+|+..+.... .+ .+..+||+||+|++.
T Consensus 322 LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v-~~--~~l~lvVIDE~Hrfg-- 396 (681)
T PRK10917 322 LAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV-EF--HNLGLVIIDEQHRFG-- 396 (681)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc-hh--cccceEEEechhhhh--
Confidence 67889999998874 78888999754 34455666778999999998775422 12 256889999999983
Q ss_pred ccHHHHHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHH
Q 044036 283 KSKLYMACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361 (875)
Q Consensus 283 ~S~~~kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 361 (875)
......+... ...+.++|||||+...+. +..+ |.
T Consensus 397 -~~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~~----------------------g~------------------ 431 (681)
T PRK10917 397 -VEQRLALREKGENPHVLVMTATPIPRTLA----MTAY----------------------GD------------------ 431 (681)
T ss_pred -HHHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHHc----------------------CC------------------
Confidence 2333344443 357789999999642110 0000 00
Q ss_pred HHHHHHHHHHhhchhHHhhccCCCceeE-EEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCC
Q 044036 362 LVAVLRKYLLRRTKEETIGHLMMGKEDN-VVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNL 440 (875)
Q Consensus 362 L~~~L~~~~lRR~k~~vi~~~lp~k~e~-vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (875)
.....+...++..... ..++.
T Consensus 432 ------------~~~s~i~~~p~~r~~i~~~~~~---------------------------------------------- 453 (681)
T PRK10917 432 ------------LDVSVIDELPPGRKPITTVVIP---------------------------------------------- 453 (681)
T ss_pred ------------CceEEEecCCCCCCCcEEEEeC----------------------------------------------
Confidence 0000000011000000 00000
Q ss_pred CCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHH
Q 044036 441 DGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRA 520 (875)
Q Consensus 441 ~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~ 520 (875)
..+...
T Consensus 454 --------------------------------------------------------------------------~~~~~~ 459 (681)
T PRK10917 454 --------------------------------------------------------------------------DSRRDE 459 (681)
T ss_pred --------------------------------------------------------------------------cccHHH
Confidence 011122
Q ss_pred HHHHHHHhhcCCCeEEEEecchh--------HHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 521 LEKLMYSWASKGDKILLFSYSVR--------MLDILEKFLIRK--GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 521 L~~LL~~~~~~g~KVLIFs~~~~--------~ld~L~~~L~~~--g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
+.+.+......|++++|||..+. ....+...|... ++++..+||.|+..+|.+++++|.++... +|||
T Consensus 460 ~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~--ILVa 537 (681)
T PRK10917 460 VYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID--ILVA 537 (681)
T ss_pred HHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEE
Confidence 33334434467889999997542 234455555544 57899999999999999999999987544 8999
Q ss_pred cCCcccccCCCCCCEEEEcCCCC-CchhHHHhhhcccccCCcceEEEEEEee
Q 044036 591 TRAGGLGLNLVSANRVVIFDPNW-NPAQDLQAQDRSFRFGQKRHVIVFRLLS 641 (875)
Q Consensus 591 t~agg~GLNL~~An~VI~~D~~W-Np~~~~QaigR~~RiGQ~k~V~VyrLi~ 641 (875)
|.+.++|+|+++++.||++|++. ..+.+.|++||++|-|... ++|-+..
T Consensus 538 T~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g--~~ill~~ 587 (681)
T PRK10917 538 TTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQS--YCVLLYK 587 (681)
T ss_pred CcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCce--EEEEEEC
Confidence 99999999999999999999984 5788999999999988754 4454553
No 47
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.90 E-value=6.6e-22 Score=239.07 Aligned_cols=329 Identities=15% Similarity=0.120 Sum_probs=215.4
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.|++||.+++..+++ +++.|+...+|+|||+..+..+...+.. .....+|||+|+ .|..|-
T Consensus 36 ~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~--------------~~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 36 RPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD--------------DPRATALYLAPTKALAADQ 97 (742)
T ss_pred cCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh--------------CCCcEEEEEcChHHHHHHH
Confidence 689999999997765 8899999999999999966544433321 124579999996 667778
Q ss_pred HHHHHHhc--CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--------cccccccccEEEEcCCccccCc-c
Q 044036 215 EIEFSRWS--TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--------SILSEVNWEIVIVDEAHRLKNE-K 283 (875)
Q Consensus 215 ~~E~~k~~--~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--------~~l~~~~w~~VIiDEAH~ikn~-~ 283 (875)
..++.++. ++++.+++|.........+. .+.+|+|+|++++.... ..+. +.++||+||||.+.+. .
T Consensus 98 ~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~-~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vViDEah~~~g~fg 174 (742)
T TIGR03817 98 LRAVRELTLRGVRPATYDGDTPTEERRWAR-EHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVVIDECHSYRGVFG 174 (742)
T ss_pred HHHHHHhccCCeEEEEEeCCCCHHHHHHHh-cCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEEEeChhhccCccH
Confidence 88888875 36788899987654444443 34799999998875211 0122 3489999999999652 3
Q ss_pred cHHHHHHHhc--------cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHH
Q 044036 284 SKLYMACLEL--------KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIA 355 (875)
Q Consensus 284 S~~~kal~~l--------~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~ 355 (875)
+.....+.++ .....+++|||.- ++.++. .++. ..|+..
T Consensus 175 ~~~~~il~rL~ri~~~~g~~~q~i~~SATi~--n~~~~~---~~l~--------------g~~~~~-------------- 221 (742)
T TIGR03817 175 SHVALVLRRLRRLCARYGASPVFVLASATTA--DPAAAA---SRLI--------------GAPVVA-------------- 221 (742)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCC--CHHHHH---HHHc--------------CCCeEE--------------
Confidence 4444444443 2246789999942 233321 1110 000000
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHhhccCCCc-eeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHH
Q 044036 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGK-EDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECC 434 (875)
Q Consensus 356 ~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k-~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 434 (875)
+.....|.. ....++.+. .. . ... .
T Consensus 222 ----------------------i~~~~~~~~~~~~~~~~p~-~~-----~-~~~---------~---------------- 247 (742)
T TIGR03817 222 ----------------------VTEDGSPRGARTVALWEPP-LT-----E-LTG---------E---------------- 247 (742)
T ss_pred ----------------------ECCCCCCcCceEEEEecCC-cc-----c-ccc---------c----------------
Confidence 000000111 111111110 00 0 000 0
Q ss_pred hhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCccc
Q 044036 435 KRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKS 514 (875)
Q Consensus 435 ~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (875)
.+ . .......
T Consensus 248 ------~~---------------------------------------------------------~-------~~r~~~~ 257 (742)
T TIGR03817 248 ------NG---------------------------------------------------------A-------PVRRSAS 257 (742)
T ss_pred ------cc---------------------------------------------------------c-------ccccchH
Confidence 00 0 0000000
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--------CCcEEEEeCCCCHHHHHHHHHHhcCCCCceE
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRK--------GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQV 586 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~--------g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v 586 (875)
..|...|..++. .+.++|||+++....+.|...|... +..+..++|++++++|.++.++|.++.-.
T Consensus 258 ~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~-- 331 (742)
T TIGR03817 258 AEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL-- 331 (742)
T ss_pred HHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce--
Confidence 124445555554 5789999999999999999988753 56788899999999999999999986543
Q ss_pred EEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHH
Q 044036 587 FLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVY 650 (875)
Q Consensus 587 ~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~ 650 (875)
+||+|++.++|||+.+.+.||+||.|-+...+.||+||++|.|+..- ++-++..+..|..+.
T Consensus 332 vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 332 GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLV 393 (742)
T ss_pred EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHH
Confidence 89999999999999999999999999999999999999999997643 344555555665533
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.90 E-value=1.6e-21 Score=240.35 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=96.5
Q ss_pred HHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCccc
Q 044036 523 KLMYSWASKGDKILLFSYSVRMLDILEKFLIRK------GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGL 596 (875)
Q Consensus 523 ~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~------g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~ 596 (875)
..|..+...+.++|||+++....+.+...|... +..+..+||+++.++|..+.+.|+++.- -+||+|.+.+.
T Consensus 275 ~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i--~vLVaTs~Le~ 352 (876)
T PRK13767 275 ETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGEL--KVVVSSTSLEL 352 (876)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCC--eEEEECChHHh
Confidence 334444446789999999999999999988762 4678999999999999999999998754 38999999999
Q ss_pred ccCCCCCCEEEEcCCCCCchhHHHhhhccccc-CCcceEEEEE
Q 044036 597 GLNLVSANRVVIFDPNWNPAQDLQAQDRSFRF-GQKRHVIVFR 638 (875)
Q Consensus 597 GLNL~~An~VI~~D~~WNp~~~~QaigR~~Ri-GQ~k~V~Vyr 638 (875)
|||+.+.+.||+||+|.+...+.||+||++|- |......++-
T Consensus 353 GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 353 GIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred cCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999999999999976 4544555544
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.89 E-value=1.8e-21 Score=237.54 Aligned_cols=306 Identities=14% Similarity=0.156 Sum_probs=209.7
Q ss_pred hhcccHHHHHHHHHHHHHhhCC--CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-ch
Q 044036 134 NCRLLEHQREGVKFLYKLYKNK--HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SV 210 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~--~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sL 210 (875)
...+.|+|..++.-+..-...+ ...++.-++|.|||..++..+..... ....+||+||+ .|
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~----------------~g~qvlvLvPT~~L 512 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL----------------DGKQVAVLVPTTLL 512 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH----------------hCCeEEEEeCcHHH
Confidence 4568999999999998765543 46799999999999987755443321 23579999996 56
Q ss_pred HHHHHHHHHHhcC---CcEEEEeCCCh----hHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcc
Q 044036 211 IQNWEIEFSRWST---FNVSIYHGPNR----DMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 211 l~qW~~E~~k~~~---~~v~v~~G~~r----~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~ 283 (875)
..|+.+.|.+++. .++.+++|... ......+..+..+|+|+|+..+.... .-.+..+|||||+|++..
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v---~f~~L~llVIDEahrfgv-- 587 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDV---KFKDLGLLIIDEEQRFGV-- 587 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCC---CcccCCEEEeecccccch--
Confidence 7888888887653 56677777532 34455566778999999997664322 223458999999999732
Q ss_pred cHHHHHHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHH
Q 044036 284 SKLYMACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362 (875)
Q Consensus 284 S~~~kal~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L 362 (875)
.....+..+. ....++|||||+...+... +....++
T Consensus 588 -~~~~~L~~~~~~~~vL~~SATpiprtl~~~--l~g~~d~---------------------------------------- 624 (926)
T TIGR00580 588 -KQKEKLKELRTSVDVLTLSATPIPRTLHMS--MSGIRDL---------------------------------------- 624 (926)
T ss_pred -hHHHHHHhcCCCCCEEEEecCCCHHHHHHH--HhcCCCc----------------------------------------
Confidence 3344555553 4678999999974322110 0000000
Q ss_pred HHHHHHHHHhhchhHHhhccCCCce-e-EEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCC
Q 044036 363 VAVLRKYLLRRTKEETIGHLMMGKE-D-NVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNL 440 (875)
Q Consensus 363 ~~~L~~~~lRR~k~~vi~~~lp~k~-e-~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (875)
.++.. +|... . ...+++..+
T Consensus 625 --------------s~I~~-~p~~R~~V~t~v~~~~~------------------------------------------- 646 (926)
T TIGR00580 625 --------------SIIAT-PPEDRLPVRTFVMEYDP------------------------------------------- 646 (926)
T ss_pred --------------EEEec-CCCCccceEEEEEecCH-------------------------------------------
Confidence 00000 00000 0 000000000
Q ss_pred CCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHH
Q 044036 441 DGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRA 520 (875)
Q Consensus 441 ~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~ 520 (875)
..
T Consensus 647 ------------------------------------------------------------------------------~~ 648 (926)
T TIGR00580 647 ------------------------------------------------------------------------------EL 648 (926)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCccccc
Q 044036 521 LEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRK--GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGL 598 (875)
Q Consensus 521 L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~--g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GL 598 (875)
+...+......+.+++||++.+..++.+...|... ++++..+||.|+..+|.+++.+|.++... +||||.+.++|+
T Consensus 649 i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~--ILVaT~iie~GI 726 (926)
T TIGR00580 649 VREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ--VLVCTTIIETGI 726 (926)
T ss_pred HHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC--EEEECChhhccc
Confidence 11111111235789999999999999999999874 78999999999999999999999987654 899999999999
Q ss_pred CCCCCCEEEEcCCC-CCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 599 NLVSANRVVIFDPN-WNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 599 NL~~An~VI~~D~~-WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
|++.+++||+++++ +..+.+.|++||++|-|.. -++|-|+..+
T Consensus 727 DIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~~ 770 (926)
T TIGR00580 727 DIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPHQ 770 (926)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECCc
Confidence 99999999999986 5667889999999998764 4556666543
No 50
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.89 E-value=1.2e-21 Score=243.05 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=88.5
Q ss_pred CCeEEEEecchhHHHHHHHHHHHc------CC---cEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCC
Q 044036 532 GDKILLFSYSVRMLDILEKFLIRK------GY---SFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVS 602 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~~------g~---~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~ 602 (875)
+.|+||||.+...++.+...|... ++ .+..++|+++ ++.+++++|.++.. ..+++|++..++|+|++.
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~-p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERL-PNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCC-CeEEEEecccccCCCccc
Confidence 479999999999999888777642 22 3567999985 57789999988543 468999999999999999
Q ss_pred CCEEEEcCCCCCchhHHHhhhcccccCC---cceEEEEEEe
Q 044036 603 ANRVVIFDPNWNPAQDLQAQDRSFRFGQ---KRHVIVFRLL 640 (875)
Q Consensus 603 An~VI~~D~~WNp~~~~QaigR~~RiGQ---~k~V~VyrLi 640 (875)
++.||+++|.-++..+.|++||+-|..- |....||.++
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999854 5667777764
No 51
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.2e-21 Score=222.26 Aligned_cols=317 Identities=20% Similarity=0.296 Sum_probs=216.8
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~qW 214 (875)
...|.|..++.-++. ++..|....+|+|||...+.-+...+.... .....++||++|+. |..|-
T Consensus 51 ~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~-----------~~~~~~aLil~PTRELA~Qi 115 (513)
T COG0513 51 EPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSV-----------ERKYVSALILAPTRELAVQI 115 (513)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhccc-----------ccCCCceEEECCCHHHHHHH
Confidence 345569999998776 789999999999999985544443332110 11112299999975 56777
Q ss_pred HHHHHHhcC----CcEEEEeCC-ChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cH
Q 044036 215 EIEFSRWST----FNVSIYHGP-NRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SK 285 (875)
Q Consensus 215 ~~E~~k~~~----~~v~v~~G~-~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~ 285 (875)
.+++.++.. +++..+.|. ........+.. +++|||.|+..+..+. ..+......++|+|||.++.+.. ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~ 194 (513)
T COG0513 116 AEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDD 194 (513)
T ss_pred HHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHH
Confidence 777776644 455555554 44444455655 5899999999876432 24555577899999999998763 23
Q ss_pred HHHHHHhccc-cceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHH
Q 044036 286 LYMACLELKT-RNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364 (875)
Q Consensus 286 ~~kal~~l~~-~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~ 364 (875)
+...+..+.. +..++.|||--. .. ..
T Consensus 195 i~~I~~~~p~~~qtllfSAT~~~-~i----------------------------------------------------~~ 221 (513)
T COG0513 195 IEKILKALPPDRQTLLFSATMPD-DI----------------------------------------------------RE 221 (513)
T ss_pred HHHHHHhCCcccEEEEEecCCCH-HH----------------------------------------------------HH
Confidence 4455555544 666889999421 11 11
Q ss_pred HHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCC
Q 044036 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCD 444 (875)
Q Consensus 365 ~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (875)
+...++. . | . .+.+..... +.. ..
T Consensus 222 l~~~~l~----~-------p-~---~i~v~~~~~----~~~-~~------------------------------------ 245 (513)
T COG0513 222 LARRYLN----D-------P-V---EIEVSVEKL----ERT-LK------------------------------------ 245 (513)
T ss_pred HHHHHcc----C-------C-c---EEEEccccc----ccc-cc------------------------------------
Confidence 1111110 0 0 0 111110000 000 00
Q ss_pred CCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCccc-CchHHHHHH
Q 044036 445 SCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKS-CGKMRALEK 523 (875)
Q Consensus 445 ~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~Kl~~L~~ 523 (875)
. + .+..+. ... ..|+..|..
T Consensus 246 ------------~---i-~q~~~~-------------------------------------------v~~~~~k~~~L~~ 266 (513)
T COG0513 246 ------------K---I-KQFYLE-------------------------------------------VESEEEKLELLLK 266 (513)
T ss_pred ------------C---c-eEEEEE-------------------------------------------eCCHHHHHHHHHH
Confidence 0 0 000000 000 138888888
Q ss_pred HHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCC
Q 044036 524 LMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSA 603 (875)
Q Consensus 524 LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~A 603 (875)
++... ...++|||++....++.|...|...|+++..|||++++.+|.++++.|+++... +||+|+++++|||+...
T Consensus 267 ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~--vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 267 LLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR--VLVATDVAARGLDIPDV 342 (513)
T ss_pred HHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC--EEEEechhhccCCcccc
Confidence 88864 334799999999999999999999999999999999999999999999976554 89999999999999999
Q ss_pred CEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 604 NRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 604 n~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
++||+||+|.++..|.||+||++|.|.+- ..+.|++.
T Consensus 343 ~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~ 379 (513)
T COG0513 343 SHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE 379 (513)
T ss_pred ceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc
Confidence 99999999999999999999999999543 55677776
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.88 E-value=6.4e-21 Score=237.44 Aligned_cols=305 Identities=14% Similarity=0.169 Sum_probs=206.3
Q ss_pred hhcccHHHHHHHHHHHHHhhCC--CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-h
Q 044036 134 NCRLLEHQREGVKFLYKLYKNK--HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-V 210 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~--~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-L 210 (875)
...+.+.|..++.-+....... ...++..++|+|||.+++..+.... .....+||+||+. |
T Consensus 598 ~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~----------------~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV----------------ENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH----------------HcCCeEEEEeCcHHH
Confidence 4478899999999887755433 5789999999999998764433322 1356799999975 5
Q ss_pred HHHHHHHHHHhcC---CcEEEEeCCChh----HHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcc
Q 044036 211 IQNWEIEFSRWST---FNVSIYHGPNRD----MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 211 l~qW~~E~~k~~~---~~v~v~~G~~r~----~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~ 283 (875)
..|+.+.|.+++. .++.+++|.... ..+..+..+..+|+|+|+..+... +.-.+..+|||||+|++..
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~-- 736 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV-- 736 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch--
Confidence 6778888876543 566677765322 233445557789999999876532 2223578999999999833
Q ss_pred cHHHHHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHH
Q 044036 284 SKLYMACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362 (875)
Q Consensus 284 S~~~kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L 362 (875)
.....++.+ .....++|||||++..+... +..+
T Consensus 737 -~~~e~lk~l~~~~qvLl~SATpiprtl~l~---~~gl------------------------------------------ 770 (1147)
T PRK10689 737 -RHKERIKAMRADVDILTLTATPIPRTLNMA---MSGM------------------------------------------ 770 (1147)
T ss_pred -hHHHHHHhcCCCCcEEEEcCCCCHHHHHHH---HhhC------------------------------------------
Confidence 234445555 35578999999975322100 0000
Q ss_pred HHHHHHHHHhhchhHHhhccCCCce--eEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCC
Q 044036 363 VAVLRKYLLRRTKEETIGHLMMGKE--DNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNL 440 (875)
Q Consensus 363 ~~~L~~~~lRR~k~~vi~~~lp~k~--e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (875)
+.. ..+. .+|... ...+....
T Consensus 771 ---------~d~--~~I~-~~p~~r~~v~~~~~~~--------------------------------------------- 793 (1147)
T PRK10689 771 ---------RDL--SIIA-TPPARRLAVKTFVREY--------------------------------------------- 793 (1147)
T ss_pred ---------CCc--EEEe-cCCCCCCCceEEEEec---------------------------------------------
Confidence 000 0000 000000 00000000
Q ss_pred CCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHH
Q 044036 441 DGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRA 520 (875)
Q Consensus 441 ~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~ 520 (875)
.....
T Consensus 794 ---------------------------------------------------------------------------~~~~~ 798 (1147)
T PRK10689 794 ---------------------------------------------------------------------------DSLVV 798 (1147)
T ss_pred ---------------------------------------------------------------------------CcHHH
Confidence 00001
Q ss_pred HHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCccccc
Q 044036 521 LEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRK--GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGL 598 (875)
Q Consensus 521 L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~--g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GL 598 (875)
...++..+. .+.+|+||++.+..++.+...|... ++++..+||.|++.+|.+++.+|.++... +||+|++.++||
T Consensus 799 k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~--VLVaTdIierGI 875 (1147)
T PRK10689 799 REAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN--VLVCTTIIETGI 875 (1147)
T ss_pred HHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC--EEEECchhhccc
Confidence 122233332 4678999999999999999999886 78999999999999999999999987554 899999999999
Q ss_pred CCCCCCEEEEcCCC-CCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 599 NLVSANRVVIFDPN-WNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 599 NL~~An~VI~~D~~-WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
|++++++||+.+++ |+...+.|++||++|.|.+. ++|-+...
T Consensus 876 DIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~~~ 918 (1147)
T PRK10689 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPH 918 (1147)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEEEeCC
Confidence 99999999998775 78889999999999998764 44544433
No 53
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2e-21 Score=196.20 Aligned_cols=321 Identities=19% Similarity=0.243 Sum_probs=222.6
Q ss_pred ccCCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHH-HHHHHHHHhcCCCCCcchhhcccccCCCCcEEEE
Q 044036 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQ-TIAFLAAVFGKDESSDSTILKDNKVDKKGYVLII 205 (875)
Q Consensus 127 ~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiq-aiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV 205 (875)
++-|+.| |..++..++. ++.+|.-..-|+|||.+ +|+++..+- -..+.-.+||+
T Consensus 47 fekPS~I-------QqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d--------------~~~r~tQ~lil 101 (400)
T KOG0328|consen 47 FEKPSAI-------QQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLD--------------ISVRETQALIL 101 (400)
T ss_pred cCCchHH-------Hhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecc--------------cccceeeEEEe
Confidence 4567777 8888887766 89999999999999987 556554431 01123458999
Q ss_pred cCcchH-HHHHHHHHHhcC---CcEEEEeC-CChhHHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCcc
Q 044036 206 CPSSVI-QNWEIEFSRWST---FNVSIYHG-PNRDMILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHR 278 (875)
Q Consensus 206 ~P~sLl-~qW~~E~~k~~~---~~v~v~~G-~~r~~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~ 278 (875)
.|+.-+ .|-.+-+...+. ..+....| .+-......+. .+.+||.-|+..+-.. ...|+-....++|+|||+.
T Consensus 102 sPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld-~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 102 SPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLD-YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE 180 (400)
T ss_pred cChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhc-ccceEeeCCCchHHHHHHhccccccceeEEEeccHHH
Confidence 998654 444444444433 44544444 44334444554 6778999998876532 3456666789999999999
Q ss_pred ccCc--ccHHHHHHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHH
Q 044036 279 LKNE--KSKLYMACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIA 355 (875)
Q Consensus 279 ikn~--~S~~~kal~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~ 355 (875)
+.|. ..+++...+.|. ....+++|||- +.|+.
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eil----------------------------------------- 215 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEIL----------------------------------------- 215 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHH-----------------------------------------
Confidence 8664 456777777775 66778888884 12222
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHh
Q 044036 356 DERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCK 435 (875)
Q Consensus 356 ~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 435 (875)
++...||-- |..-.+-.-.++.+--+.|- .+
T Consensus 216 --------emt~kfmtd------------pvrilvkrdeltlEgIKqf~--v~--------------------------- 246 (400)
T KOG0328|consen 216 --------EMTEKFMTD------------PVRILVKRDELTLEGIKQFF--VA--------------------------- 246 (400)
T ss_pred --------HHHHHhcCC------------ceeEEEecCCCchhhhhhhe--ee---------------------------
Confidence 222222100 00000000111111000000 00
Q ss_pred hccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccC
Q 044036 436 RLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSC 515 (875)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 515 (875)
. ....
T Consensus 247 ----------------------------------------------------------------v-----------e~Ee 251 (400)
T KOG0328|consen 247 ----------------------------------------------------------------V-----------EKEE 251 (400)
T ss_pred ----------------------------------------------------------------e-----------chhh
Confidence 0 0011
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
.|...|.+|-..+ .-...+|||+.....|+|.+.+....+.+..+||.|++++|.+++++|+++.+. +||+|++-+
T Consensus 252 wKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr--vLitTDVwa 327 (400)
T KOG0328|consen 252 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR--VLITTDVWA 327 (400)
T ss_pred hhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce--EEEEechhh
Confidence 3777788777665 345789999999999999999999999999999999999999999999998775 899999999
Q ss_pred cccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHH
Q 044036 596 LGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEEL 648 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~ 648 (875)
+|++++..+.||+||.|-|+..|++||||.+|+|.+- .+.+|+....++..
T Consensus 328 RGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~~~l 378 (400)
T KOG0328|consen 328 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDLRIL 378 (400)
T ss_pred ccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHHHHHH
Confidence 9999999999999999999999999999999999764 35678877666543
No 54
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.86 E-value=1.4e-20 Score=204.43 Aligned_cols=369 Identities=18% Similarity=0.203 Sum_probs=229.9
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~qW 214 (875)
..-|.|+.++.-+++ ++..|+..|+|+|||...+--|.......+.-. ........+..+|++|+. |.+|-
T Consensus 267 eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~----~~en~~~gpyaiilaptReLaqqI 338 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMA----RLENNIEGPYAIILAPTRELAQQI 338 (673)
T ss_pred CCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcc----hhhhcccCceeeeechHHHHHHHH
Confidence 345679988886555 788899999999999764444433333222100 000123456689999986 55667
Q ss_pred HHHHHHhcC---CcEEEEeCC-ChhHHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCccccCcc--cHH
Q 044036 215 EIEFSRWST---FNVSIYHGP-NRDMILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHRLKNEK--SKL 286 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~-~r~~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~ikn~~--S~~ 286 (875)
..|-.+|+. ++++.+.|. ..+. ...-...+++|+|.|+..+... ..+|..-+..+||+|||.++-... -..
T Consensus 339 eeEt~kf~~~lg~r~vsvigg~s~EE-q~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv 417 (673)
T KOG0333|consen 339 EEETNKFGKPLGIRTVSVIGGLSFEE-QGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDV 417 (673)
T ss_pred HHHHHHhcccccceEEEEecccchhh-hhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHH
Confidence 788888754 555554444 4433 2222345789999999877533 223444467899999999984421 111
Q ss_pred HHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHH
Q 044036 287 YMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVL 366 (875)
Q Consensus 287 ~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L 366 (875)
.+.|..+ |..|-- .+.+++. .-..++
T Consensus 418 ~~iL~~m-----------Pssn~k---------------~~tde~~----------------------------~~~~~~ 443 (673)
T KOG0333|consen 418 QKILEQM-----------PSSNAK---------------PDTDEKE----------------------------GEERVR 443 (673)
T ss_pred HHHHHhC-----------CccccC---------------CCccchh----------------------------hHHHHH
Confidence 1111111 111100 0000000 000111
Q ss_pred HHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCC
Q 044036 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSC 446 (875)
Q Consensus 367 ~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (875)
..|. +.|. -..-.+....|++.-..+-+.++..+.+..+-.. +.
T Consensus 444 ~~~~--~~k~--------yrqT~mftatm~p~verlar~ylr~pv~vtig~~-----------------------gk--- 487 (673)
T KOG0333|consen 444 KNFS--SSKK--------YRQTVMFTATMPPAVERLARSYLRRPVVVTIGSA-----------------------GK--- 487 (673)
T ss_pred hhcc--cccc--------eeEEEEEecCCChHHHHHHHHHhhCCeEEEeccC-----------------------CC---
Confidence 1110 0000 0122345567888777777766653221110000 00
Q ss_pred CccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHH
Q 044036 447 PFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMY 526 (875)
Q Consensus 447 ~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~ 526 (875)
++|.+ .+. ......+.|+..|.++|.
T Consensus 488 ----------------~~~rv---------------------------------eQ~-----v~m~~ed~k~kkL~eil~ 513 (673)
T KOG0333|consen 488 ----------------PTPRV---------------------------------EQK-----VEMVSEDEKRKKLIEILE 513 (673)
T ss_pred ----------------Cccch---------------------------------heE-----EEEecchHHHHHHHHHHH
Confidence 00000 000 000223458999999999
Q ss_pred HhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEE
Q 044036 527 SWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRV 606 (875)
Q Consensus 527 ~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~V 606 (875)
.. ....+|||.+....+|.|.+.|...||.++++||+-++++|+.++..|+++... +|++|+++|+||++++.++|
T Consensus 514 ~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d--IlVaTDvAgRGIDIpnVSlV 589 (673)
T KOG0333|consen 514 SN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD--ILVATDVAGRGIDIPNVSLV 589 (673)
T ss_pred hC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC--EEEEecccccCCCCCcccee
Confidence 85 467899999999999999999999999999999999999999999999997665 89999999999999999999
Q ss_pred EEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCc
Q 044036 607 VIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK 667 (875)
Q Consensus 607 I~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~ 667 (875)
|+||..-+...|.+||||.+|-|+.-.+ ..|+++..-+- .| ..|+.|...+.++.
T Consensus 590 inydmaksieDYtHRIGRTgRAGk~Gta--iSflt~~dt~v-~y---dLkq~l~es~~s~~ 644 (673)
T KOG0333|consen 590 INYDMAKSIEDYTHRIGRTGRAGKSGTA--ISFLTPADTAV-FY---DLKQALRESVKSHC 644 (673)
T ss_pred eecchhhhHHHHHHHhccccccccCcee--EEEeccchhHH-HH---HHHHHHHHhhhccC
Confidence 9999999999999999999999997655 44555543221 12 23555555555443
No 55
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.85 E-value=2.6e-19 Score=201.34 Aligned_cols=121 Identities=19% Similarity=0.269 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCC--cEEEEeCCCCHHHHHH----HHHHhcCCCCceEEEEe
Q 044036 517 KMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGY--SFSRLDGSTPSNLRQS----LVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~--~~~~ldG~~~~~eR~~----~i~~F~~~~~~~v~LiS 590 (875)
|...+..++..+ ..+.++|||++.+..++.+...|...+. .+..++|.++..+|.+ +++.|.++.. .+||+
T Consensus 208 ~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~--~ilva 284 (358)
T TIGR01587 208 EISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEK--FVIVA 284 (358)
T ss_pred CHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCC--eEEEE
Confidence 555666666543 4678999999999999999999988776 4899999999999976 4889987543 48999
Q ss_pred cCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcc----eEEEEEEeeCC
Q 044036 591 TRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR----HVIVFRLLSAG 643 (875)
Q Consensus 591 t~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k----~V~VyrLi~~g 643 (875)
|++.++|+|+ .++.||.++.+ +..+.|++||++|.|.+. .|+||.....+
T Consensus 285 T~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 285 TQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred Ccchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 9999999999 58999998765 789999999999999763 46666655544
No 56
>PRK02362 ski2-like helicase; Provisional
Probab=99.85 E-value=1.2e-19 Score=221.59 Aligned_cols=316 Identities=18% Similarity=0.182 Sum_probs=201.1
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl~qW 214 (875)
.|+|+|.+++.-+ +..+.++|++.++|+|||+.+...+...+. ..+++|+|+| ..|+.|+
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~----------------~~~kal~i~P~raLa~q~ 83 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA----------------RGGKALYIVPLRALASEK 83 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh----------------cCCcEEEEeChHHHHHHH
Confidence 6899999999753 335789999999999999998655443321 3567999999 5789999
Q ss_pred HHHHHHhc--CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc----cccccccccEEEEcCCccccCccc-HH-
Q 044036 215 EIEFSRWS--TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG----SILSEVNWEIVIVDEAHRLKNEKS-KL- 286 (875)
Q Consensus 215 ~~E~~k~~--~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~----~~l~~~~w~~VIiDEAH~ikn~~S-~~- 286 (875)
.+++.++. +.++.+++|...... .. ....+|+|+|++.+.... ..+. +.++||+||+|.+.+..- ..
T Consensus 84 ~~~~~~~~~~g~~v~~~tGd~~~~~-~~--l~~~~IiV~Tpek~~~llr~~~~~l~--~v~lvViDE~H~l~d~~rg~~l 158 (737)
T PRK02362 84 FEEFERFEELGVRVGISTGDYDSRD-EW--LGDNDIIVATSEKVDSLLRNGAPWLD--DITCVVVDEVHLIDSANRGPTL 158 (737)
T ss_pred HHHHHHhhcCCCEEEEEeCCcCccc-cc--cCCCCEEEECHHHHHHHHhcChhhhh--hcCEEEEECccccCCCcchHHH
Confidence 99998874 478888888743221 11 235689999998764321 1222 458999999999975432 12
Q ss_pred HHHHHhc----cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHH
Q 044036 287 YMACLEL----KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362 (875)
Q Consensus 287 ~kal~~l----~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L 362 (875)
...+..+ ...+.++||||.- +..++. .|++...+.+. + .|
T Consensus 159 e~il~rl~~~~~~~qii~lSATl~--n~~~la---~wl~~~~~~~~------~-rp------------------------ 202 (737)
T PRK02362 159 EVTLAKLRRLNPDLQVVALSATIG--NADELA---DWLDAELVDSE------W-RP------------------------ 202 (737)
T ss_pred HHHHHHHHhcCCCCcEEEEcccCC--CHHHHH---HHhCCCcccCC------C-CC------------------------
Confidence 2222322 3456799999963 445543 34432211000 0 00
Q ss_pred HHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCC
Q 044036 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDG 442 (875)
Q Consensus 363 ~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (875)
-+....+.+.. . .+ .. .
T Consensus 203 ---------------------v~l~~~v~~~~--~----~~---~~--~------------------------------- 219 (737)
T PRK02362 203 ---------------------IDLREGVFYGG--A----IH---FD--D------------------------------- 219 (737)
T ss_pred ---------------------CCCeeeEecCC--e----ec---cc--c-------------------------------
Confidence 00001110000 0 00 00 0
Q ss_pred CCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHH
Q 044036 443 CDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALE 522 (875)
Q Consensus 443 ~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~ 522 (875)
.... +. ......++..+.
T Consensus 220 --------------------~~~~-~~-----------------------------------------~~~~~~~~~~~~ 237 (737)
T PRK02362 220 --------------------SQRE-VE-----------------------------------------VPSKDDTLNLVL 237 (737)
T ss_pred --------------------cccc-CC-----------------------------------------CccchHHHHHHH
Confidence 0000 00 000001222233
Q ss_pred HHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc------------------------------------CCcEEEEeCCC
Q 044036 523 KLMYSWASKGDKILLFSYSVRMLDILEKFLIRK------------------------------------GYSFSRLDGST 566 (875)
Q Consensus 523 ~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~------------------------------------g~~~~~ldG~~ 566 (875)
+. ...+.++|||+++......+...|... ...+..+||++
T Consensus 238 ~~----~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl 313 (737)
T PRK02362 238 DT----LEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGL 313 (737)
T ss_pred HH----HHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCC
Confidence 32 336789999999998877666665432 13578899999
Q ss_pred CHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEE----cC-----CCCCchhHHHhhhcccccCCcceEEEE
Q 044036 567 PSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI----FD-----PNWNPAQDLQAQDRSFRFGQKRHVIVF 637 (875)
Q Consensus 567 ~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~----~D-----~~WNp~~~~QaigR~~RiGQ~k~V~Vy 637 (875)
+..+|..+.+.|+++.- -+|++|.+.+.|+|+++.+.||. || .+.++..+.|++||++|.|....-.++
T Consensus 314 ~~~eR~~ve~~Fr~G~i--~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~i 391 (737)
T PRK02362 314 SREHRELVEDAFRDRLI--KVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAV 391 (737)
T ss_pred CHHHHHHHHHHHHcCCC--eEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEE
Confidence 99999999999998644 38999999999999999877775 77 467889999999999999987655556
Q ss_pred EEeeC
Q 044036 638 RLLSA 642 (875)
Q Consensus 638 rLi~~ 642 (875)
-+...
T Consensus 392 i~~~~ 396 (737)
T PRK02362 392 LLAKS 396 (737)
T ss_pred EEecC
Confidence 56544
No 57
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=9.4e-20 Score=201.05 Aligned_cols=320 Identities=17% Similarity=0.232 Sum_probs=211.1
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHH-HHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFL-AAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQ 212 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall-~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~ 212 (875)
..+.|+|+-++.-+.. +++.+.+..+|+|||...+.-+ .+++.... .+... ......+.+||++|+ .|+.
T Consensus 95 ~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~-~~~~~---~~~~~~P~~lIlapTReL~~ 166 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGP-EDRGE---SGGGVYPRALILAPTRELVD 166 (482)
T ss_pred cCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCc-ccCcc---cCCCCCCceEEEeCcHHHhh
Confidence 4566789988875544 8888999999999999966444 44443322 11100 011235779999997 5889
Q ss_pred HHHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc---c
Q 044036 213 NWEIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK---S 284 (875)
Q Consensus 213 qW~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~---S 284 (875)
|--+|..++.. .+..+.+|..........-..+++|+++|...+.... ..+..-+..++|||||.++-... -
T Consensus 167 Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p 246 (482)
T KOG0335|consen 167 QIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEP 246 (482)
T ss_pred HHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccc
Confidence 99999999976 4445445543333333333567999999999887432 22333344599999999986521 1
Q ss_pred HHHHHHHhc-----cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHH
Q 044036 285 KLYMACLEL-----KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERK 359 (875)
Q Consensus 285 ~~~kal~~l-----~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~ 359 (875)
.+.+.+... ..+..+++|||-- .
T Consensus 247 ~Ir~iv~~~~~~~~~~~qt~mFSAtfp----~------------------------------------------------ 274 (482)
T KOG0335|consen 247 QIRKIVEQLGMPPKNNRQTLLFSATFP----K------------------------------------------------ 274 (482)
T ss_pred cHHHHhcccCCCCccceeEEEEeccCC----h------------------------------------------------
Confidence 233333332 2344466666620 0
Q ss_pred HHHHHHHHHHHHhhc----hhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHh
Q 044036 360 QHLVAVLRKYLLRRT----KEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCK 435 (875)
Q Consensus 360 ~~L~~~L~~~~lRR~----k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 435 (875)
.+..+...| ++-. +-..++.-.......++||.-
T Consensus 275 -~iq~l~~~f-l~~~yi~laV~rvg~~~~ni~q~i~~V~~---------------------------------------- 312 (482)
T KOG0335|consen 275 -EIQRLAADF-LKDNYIFLAVGRVGSTSENITQKILFVNE---------------------------------------- 312 (482)
T ss_pred -hhhhhHHHH-hhccceEEEEeeeccccccceeEeeeecc----------------------------------------
Confidence 011111111 1000 000000001111122222221
Q ss_pred hccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccC
Q 044036 436 RLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSC 515 (875)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 515 (875)
.
T Consensus 313 -------------------------------------------------------------------------------~ 313 (482)
T KOG0335|consen 313 -------------------------------------------------------------------------------M 313 (482)
T ss_pred -------------------------------------------------------------------------------h
Confidence 1
Q ss_pred chHHHHHHHHHHhhc-------CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEE
Q 044036 516 GKMRALEKLMYSWAS-------KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFL 588 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~-------~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~L 588 (875)
.|...|.++|..... ..++++||+...+.++.+..+|...++++.-|+|..++.+|.+.++.|.++.-. +|
T Consensus 314 ~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p--vl 391 (482)
T KOG0335|consen 314 EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP--VL 391 (482)
T ss_pred hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc--eE
Confidence 344455555543331 125999999999999999999999999999999999999999999999998655 89
Q ss_pred EecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEE
Q 044036 589 ISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVF 637 (875)
Q Consensus 589 iSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~Vy 637 (875)
|.|.++++|||+.+..+||+||.|-+-..|.+||||++|.|+.-..+.|
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 9999999999999999999999999999999999999999998665543
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.83 E-value=5.2e-19 Score=214.43 Aligned_cols=310 Identities=17% Similarity=0.176 Sum_probs=194.7
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..|+|+|.+++..+. .+.+.|++.++|+|||+++...+...+. ..+++|+|+|. +|+.+
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~----------------~~~k~v~i~P~raLa~q 80 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFL----------------AGLKSIYIVPLRSLAME 80 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHH----------------hCCcEEEEechHHHHHH
Confidence 358999999998753 4788999999999999997765554431 24578999995 68888
Q ss_pred HHHHHHHhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc--ccccccccEEEEcCCccccCcc-cHHHH
Q 044036 214 WEIEFSRWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS--ILSEVNWEIVIVDEAHRLKNEK-SKLYM 288 (875)
Q Consensus 214 W~~E~~k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l~~~~w~~VIiDEAH~ikn~~-S~~~k 288 (875)
+.+++.++.. .++....|...... .. ....+|+|+|++.+..... ...-.++++||+||||.+.+.. .....
T Consensus 81 ~~~~~~~l~~~g~~v~~~~G~~~~~~-~~--~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le 157 (674)
T PRK01172 81 KYEELSRLRSLGMRVKISIGDYDDPP-DF--IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLE 157 (674)
T ss_pred HHHHHHHHhhcCCeEEEEeCCCCCCh-hh--hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHH
Confidence 9999988754 67777777643221 11 1356899999986542211 1111256899999999996532 11222
Q ss_pred -HHH---hc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHH
Q 044036 289 -ACL---EL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363 (875)
Q Consensus 289 -al~---~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~ 363 (875)
.+. .+ ...+.++||||+- +..++ ..|++...+.. .+
T Consensus 158 ~ll~~~~~~~~~~riI~lSATl~--n~~~l---a~wl~~~~~~~------~~---------------------------- 198 (674)
T PRK01172 158 TVLSSARYVNPDARILALSATVS--NANEL---AQWLNASLIKS------NF---------------------------- 198 (674)
T ss_pred HHHHHHHhcCcCCcEEEEeCccC--CHHHH---HHHhCCCccCC------CC----------------------------
Confidence 222 22 2346799999962 34443 23333211100 00
Q ss_pred HHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCC
Q 044036 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGC 443 (875)
Q Consensus 364 ~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (875)
-+.+....+.+.. ..| ...
T Consensus 199 ------------------r~vpl~~~i~~~~------~~~---~~~---------------------------------- 217 (674)
T PRK01172 199 ------------------RPVPLKLGILYRK------RLI---LDG---------------------------------- 217 (674)
T ss_pred ------------------CCCCeEEEEEecC------eee---ecc----------------------------------
Confidence 0001111111100 000 000
Q ss_pred CCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHH
Q 044036 444 DSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEK 523 (875)
Q Consensus 444 ~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~ 523 (875)
.. ..+. .+..
T Consensus 218 --------------------------------------------------------~~-------------~~~~-~~~~ 227 (674)
T PRK01172 218 --------------------------------------------------------YE-------------RSQV-DINS 227 (674)
T ss_pred --------------------------------------------------------cc-------------cccc-cHHH
Confidence 00 0000 0223
Q ss_pred HHHHhhcCCCeEEEEecchhHHHHHHHHHHHc-------------------------CCcEEEEeCCCCHHHHHHHHHHh
Q 044036 524 LMYSWASKGDKILLFSYSVRMLDILEKFLIRK-------------------------GYSFSRLDGSTPSNLRQSLVDDF 578 (875)
Q Consensus 524 LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~-------------------------g~~~~~ldG~~~~~eR~~~i~~F 578 (875)
++.+....+.++|||++.....+.+...|... ...+..++|+++.++|..+.+.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 44444456788999999888777776666432 12467789999999999999999
Q ss_pred cCCCCceEEEEecCCcccccCCCCCCEEEEcCC---------CCCchhHHHhhhcccccCCcceEEEEEEe
Q 044036 579 NSSPSKQVFLISTRAGGLGLNLVSANRVVIFDP---------NWNPAQDLQAQDRSFRFGQKRHVIVFRLL 640 (875)
Q Consensus 579 ~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~---------~WNp~~~~QaigR~~RiGQ~k~V~VyrLi 640 (875)
+++... +|++|.+.+.|+|+++ .+||++|. ++++..+.|++||++|.|.......+-++
T Consensus 308 ~~g~i~--VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 308 RNRYIK--VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYA 375 (674)
T ss_pred HcCCCe--EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEe
Confidence 986443 8999999999999986 68888765 35677889999999999976553333333
No 59
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.1e-18 Score=188.02 Aligned_cols=311 Identities=21% Similarity=0.278 Sum_probs=215.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCC--cEEEEcCcchH-H
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKG--YVLIICPSSVI-Q 212 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~--~~LIV~P~sLl-~ 212 (875)
+..|-|..++..++. +..+++-..+|+|||+..+.-+........ ...+.+ -.|||+|+.-+ .
T Consensus 28 ~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~----------~~~~~~~vgalIIsPTRELa~ 93 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRRE----------AKTPPGQVGALIISPTRELAR 93 (567)
T ss_pred ccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhc----------cCCCccceeEEEecCcHHHHH
Confidence 577889999998876 888999999999999997776665542111 112223 57999998544 3
Q ss_pred HH---HHHHHHh-cCCcEEEEeCC-ChhHHHHHHHhCCceEEEeecccccc----cccccccccccEEEEcCCccccCcc
Q 044036 213 NW---EIEFSRW-STFNVSIYHGP-NRDMILEKLEACGVEVLITSFDSYRI----HGSILSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 213 qW---~~E~~k~-~~~~v~v~~G~-~r~~~~~~~~~~~~~VvItTy~~l~~----~~~~l~~~~w~~VIiDEAH~ikn~~ 283 (875)
|. ...|..+ .++++..+.|. +-+.....+...+..|+|.|+..+.. ....+....-.++|+|||+++..-.
T Consensus 94 QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmg 173 (567)
T KOG0345|consen 94 QIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMG 173 (567)
T ss_pred HHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhccc
Confidence 33 3334444 33777777776 34566777788888999999987653 2334555567899999999996643
Q ss_pred --cHHHHHHHhccccceE-EeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHH
Q 044036 284 --SKLYMACLELKTRNRI-GLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQ 360 (875)
Q Consensus 284 --S~~~kal~~l~~~~rl-lLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~ 360 (875)
......+..|...+|- ++|||-. .-.+
T Consensus 174 Fe~~~n~ILs~LPKQRRTGLFSATq~--~~v~------------------------------------------------ 203 (567)
T KOG0345|consen 174 FEASVNTILSFLPKQRRTGLFSATQT--QEVE------------------------------------------------ 203 (567)
T ss_pred HHHHHHHHHHhcccccccccccchhh--HHHH------------------------------------------------
Confidence 3455666667666554 4577721 1000
Q ss_pred HHHHHHHHHHHhhchhHHhhccCCCceeEEEEecC-----CHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHh
Q 044036 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTM-----SDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCK 435 (875)
Q Consensus 361 ~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~l-----t~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 435 (875)
+ |...-||.... |.+.. +|.....|
T Consensus 204 ---d-L~raGLRNpv~--------------V~V~~k~~~~tPS~L~~~-------------------------------- 233 (567)
T KOG0345|consen 204 ---D-LARAGLRNPVR--------------VSVKEKSKSATPSSLALE-------------------------------- 233 (567)
T ss_pred ---H-HHHhhccCcee--------------eeecccccccCchhhcce--------------------------------
Confidence 0 11111221111 00000 11000000
Q ss_pred hccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccC
Q 044036 436 RLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSC 515 (875)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 515 (875)
++. +..-
T Consensus 234 ------------------------------Y~v-------------------------------------------~~a~ 240 (567)
T KOG0345|consen 234 ------------------------------YLV-------------------------------------------CEAD 240 (567)
T ss_pred ------------------------------eeE-------------------------------------------ecHH
Confidence 000 0111
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR--KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~--~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
-|+..|..+|.. ...+|+|||-..-...++....|.. .+.+++.+||.|++..|..++..|....+. +|++|++
T Consensus 241 eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~--vl~~TDV 316 (567)
T KOG0345|consen 241 EKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG--VLFCTDV 316 (567)
T ss_pred HHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc--eEEeehh
Confidence 378888888887 3568999999998888888888875 478899999999999999999999985444 8999999
Q ss_pred cccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEE
Q 044036 594 GGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVF 637 (875)
Q Consensus 594 gg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~Vy 637 (875)
+++|||+++.|.||.||||-+|..+.+|.||+.|.|..-...||
T Consensus 317 aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 317 AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 99999999999999999999999999999999999988666554
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.83 E-value=1.2e-18 Score=207.26 Aligned_cols=105 Identities=24% Similarity=0.384 Sum_probs=88.7
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHH-----HHHHHhcC----CC-----CceEEEEecCCcc
Q 044036 530 SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ-----SLVDDFNS----SP-----SKQVFLISTRAGG 595 (875)
Q Consensus 530 ~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~-----~~i~~F~~----~~-----~~~v~LiSt~agg 595 (875)
..+.++|||++.+..++.|...|...++ ..++|.+++.+|. .++++|.+ +. ....+||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 3578999999999999999999998887 8999999999999 78999976 21 1146899999999
Q ss_pred cccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcce--EEEEEE
Q 044036 596 LGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRH--VIVFRL 639 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~--V~VyrL 639 (875)
+|||+.. ++||+++.++ ..++||+||++|.|.... ++|+.+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999975 9999987764 799999999999998643 455544
No 61
>PRK00254 ski2-like helicase; Provisional
Probab=99.83 E-value=1.7e-18 Score=211.07 Aligned_cols=153 Identities=19% Similarity=0.245 Sum_probs=105.9
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHH-HHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTI-AFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQ 212 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqai-all~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~ 212 (875)
..|+|+|.+++.-. +..+.++|++.++|+|||+.+. +++..+.. ..+++|+|+|. .|+.
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----------------~~~~~l~l~P~~aLa~ 82 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----------------EGGKAVYLVPLKALAE 82 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----------------cCCeEEEEeChHHHHH
Confidence 36899999999732 2347899999999999999984 44444421 24679999995 6888
Q ss_pred HHHHHHHHhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc----cccccccccEEEEcCCccccCc--cc
Q 044036 213 NWEIEFSRWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG----SILSEVNWEIVIVDEAHRLKNE--KS 284 (875)
Q Consensus 213 qW~~E~~k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~----~~l~~~~w~~VIiDEAH~ikn~--~S 284 (875)
++.+++..|.. .++..++|...... .. ...++|+|+|++.+.... ..+ -+.++||+||+|.+... ..
T Consensus 83 q~~~~~~~~~~~g~~v~~~~Gd~~~~~-~~--~~~~~IiV~Tpe~~~~ll~~~~~~l--~~l~lvViDE~H~l~~~~rg~ 157 (720)
T PRK00254 83 EKYREFKDWEKLGLRVAMTTGDYDSTD-EW--LGKYDIIIATAEKFDSLLRHGSSWI--KDVKLVVADEIHLIGSYDRGA 157 (720)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCCch-hh--hccCCEEEEcHHHHHHHHhCCchhh--hcCCEEEEcCcCccCCccchH
Confidence 89988888753 67888888754321 11 245789999998764321 122 25689999999999643 33
Q ss_pred HHHHHHHhc-cccceEEeecCCCCCCHHHH
Q 044036 285 KLYMACLEL-KTRNRIGLTGTIMQNKIMEL 313 (875)
Q Consensus 285 ~~~kal~~l-~~~~rllLTGTPiqN~~~El 313 (875)
.....+..+ ...+.++||||.- +..++
T Consensus 158 ~le~il~~l~~~~qiI~lSATl~--n~~~l 185 (720)
T PRK00254 158 TLEMILTHMLGRAQILGLSATVG--NAEEL 185 (720)
T ss_pred HHHHHHHhcCcCCcEEEEEccCC--CHHHH
Confidence 444445555 3456799999963 34554
No 62
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=1.4e-18 Score=181.29 Aligned_cols=317 Identities=17% Similarity=0.202 Sum_probs=215.1
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHHHH
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQNWE 215 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~qW~ 215 (875)
..|.|...|..+++ |+.||-+.-+|+|||.....-+..-+.+++ ..--.||+.|+. |..|-.
T Consensus 30 pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP-------------~giFalvlTPTrELA~Qia 92 (442)
T KOG0340|consen 30 PTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDP-------------YGIFALVLTPTRELALQIA 92 (442)
T ss_pred CCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCC-------------CcceEEEecchHHHHHHHH
Confidence 34559999998887 999999999999999875444444444332 334579999986 455555
Q ss_pred HHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccccc-c-----cccccEEEEcCCccccCcccHH
Q 044036 216 IEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSIL-S-----EVNWEIVIVDEAHRLKNEKSKL 286 (875)
Q Consensus 216 ~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l-~-----~~~w~~VIiDEAH~ikn~~S~~ 286 (875)
+.|.-.+. +++.++.|....-........+.+|||+|.+.+..+...- . -.+..++|+|||.++.+. .+
T Consensus 93 EQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~--~f 170 (442)
T KOG0340|consen 93 EQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG--CF 170 (442)
T ss_pred HHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc--ch
Confidence 55654433 7888888876554444445567899999999886543211 1 123478999999999664 22
Q ss_pred HHHHH----hcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHH
Q 044036 287 YMACL----ELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361 (875)
Q Consensus 287 ~kal~----~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 361 (875)
...+. .+. .+..+++|||- .++..++ +.-|+..+.
T Consensus 171 ~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql---------------------~~~~i~k~~------------------ 210 (442)
T KOG0340|consen 171 PDILEGIEECLPKPRQTLLFSATI-TDTIKQL---------------------FGCPITKSI------------------ 210 (442)
T ss_pred hhHHhhhhccCCCccceEEEEeeh-hhHHHHh---------------------hcCCccccc------------------
Confidence 22222 223 23568888883 1111111 111110000
Q ss_pred HHHHHHHHHHhhchhHHhhccCCCceeEEEE-ecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCC
Q 044036 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVF-CTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNL 440 (875)
Q Consensus 362 L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~-~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (875)
-+.+- .+-.+....+|+.++.
T Consensus 211 --------------------------a~~~e~~~~vstvetL~q~yI~-------------------------------- 232 (442)
T KOG0340|consen 211 --------------------------AFELEVIDGVSTVETLYQGYIL-------------------------------- 232 (442)
T ss_pred --------------------------ceEEeccCCCCchhhhhhheee--------------------------------
Confidence 00000 0011111122222211
Q ss_pred CCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHH
Q 044036 441 DGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRA 520 (875)
Q Consensus 441 ~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~ 520 (875)
....+|-.+
T Consensus 233 -----------------------------------------------------------------------~~~~vkdaY 241 (442)
T KOG0340|consen 233 -----------------------------------------------------------------------VSIDVKDAY 241 (442)
T ss_pred -----------------------------------------------------------------------cchhhhHHH
Confidence 011246667
Q ss_pred HHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccC
Q 044036 521 LEKLMYSWAS-KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLN 599 (875)
Q Consensus 521 L~~LL~~~~~-~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLN 599 (875)
|..+|..... +...++||.+.+.+..+|...|+..++.+..+|+.|++.+|...+.+|+++.-. +||.|+++++|||
T Consensus 242 Lv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~--iliaTDVAsRGLD 319 (442)
T KOG0340|consen 242 LVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR--ILIATDVASRGLD 319 (442)
T ss_pred HHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc--EEEEechhhcCCC
Confidence 8888887765 567899999999999999999999999999999999999999999999987554 8999999999999
Q ss_pred CCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 600 LVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 600 L~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
++..+-||+||.|-.|..|++|+||..|-|..-.. ..+++.-.+
T Consensus 320 IP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~a--iSivt~rDv 363 (442)
T KOG0340|consen 320 IPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMA--ISIVTQRDV 363 (442)
T ss_pred CCceeEEEecCCCCCHHHHHHhhcchhcccCCcce--EEEechhhH
Confidence 99999999999999999999999999998877542 334455444
No 63
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=1.1e-18 Score=189.21 Aligned_cols=316 Identities=17% Similarity=0.222 Sum_probs=213.3
Q ss_pred cHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHH-HHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch----HH
Q 044036 138 LEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQT-IAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV----IQ 212 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqa-iall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL----l~ 212 (875)
.|.|...|.-.+- ++..+-+.-+|+|||... +-+|..++.+. .....-++||+||+.- ++
T Consensus 205 TpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrP-----------k~~~~TRVLVL~PTRELaiQv~ 269 (691)
T KOG0338|consen 205 TPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRP-----------KKVAATRVLVLVPTRELAIQVH 269 (691)
T ss_pred CchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCc-----------ccCcceeEEEEeccHHHHHHHH
Confidence 3448777765443 566667888999999874 44444444322 2345668999999753 45
Q ss_pred HHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc---ccccccccEEEEcCCccccCcc--cHHH
Q 044036 213 NWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS---ILSEVNWEIVIVDEAHRLKNEK--SKLY 287 (875)
Q Consensus 213 qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~---~l~~~~w~~VIiDEAH~ikn~~--S~~~ 287 (875)
+-...+..|+.+.+...-|.-.-+..+.....+++|||.|+..+..+.. .+.--...++|+|||.++.... ..+.
T Consensus 270 sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademn 349 (691)
T KOG0338|consen 270 SVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMN 349 (691)
T ss_pred HHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHH
Confidence 5677788888888888888776666677777789999999999876543 2333356789999999986532 1222
Q ss_pred HHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHH
Q 044036 288 MACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVL 366 (875)
Q Consensus 288 kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L 366 (875)
..+... +.+..+++|||- ...+.||.+|
T Consensus 350 Eii~lcpk~RQTmLFSATM-teeVkdL~sl-------------------------------------------------- 378 (691)
T KOG0338|consen 350 EIIRLCPKNRQTMLFSATM-TEEVKDLASL-------------------------------------------------- 378 (691)
T ss_pred HHHHhccccccceeehhhh-HHHHHHHHHh--------------------------------------------------
Confidence 222222 344557788872 1111111100
Q ss_pred HHHHHhhchhHHhhccCCCceeEEEEecCCH-HHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCC
Q 044036 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSD-LQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDS 445 (875)
Q Consensus 367 ~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~-~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (875)
.+ +...-+|+..+. .-..+-+.++.
T Consensus 379 ---------------SL--~kPvrifvd~~~~~a~~LtQEFiR------------------------------------- 404 (691)
T KOG0338|consen 379 ---------------SL--NKPVRIFVDPNKDTAPKLTQEFIR------------------------------------- 404 (691)
T ss_pred ---------------hc--CCCeEEEeCCccccchhhhHHHhe-------------------------------------
Confidence 00 111223332211 10111111111
Q ss_pred CCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHH
Q 044036 446 CPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525 (875)
Q Consensus 446 ~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL 525 (875)
+ .+ -...-+-..|..|+
T Consensus 405 ------------I----------R~-----------------------------------------~re~dRea~l~~l~ 421 (691)
T KOG0338|consen 405 ------------I----------RP-----------------------------------------KREGDREAMLASLI 421 (691)
T ss_pred ------------e----------cc-----------------------------------------ccccccHHHHHHHH
Confidence 0 00 00001333456666
Q ss_pred HHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCE
Q 044036 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANR 605 (875)
Q Consensus 526 ~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~ 605 (875)
.+.. .+++|||.+....+..|.-.|-..|+++.-++|+.++.+|...+..|++..-. +||+|+++++||++.+..+
T Consensus 422 ~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid--vLiaTDvAsRGLDI~gV~t 497 (691)
T KOG0338|consen 422 TRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID--VLIATDVASRGLDIEGVQT 497 (691)
T ss_pred HHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC--EEEEechhhccCCccceeE
Confidence 6554 67899999999999999999999999999999999999999999999987554 8999999999999999999
Q ss_pred EEEcCCCCCchhHHHhhhcccccCCc-ceEEEEEEeeCC
Q 044036 606 VVIFDPNWNPAQDLQAQDRSFRFGQK-RHVIVFRLLSAG 643 (875)
Q Consensus 606 VI~~D~~WNp~~~~QaigR~~RiGQ~-k~V~VyrLi~~g 643 (875)
||+|+.|-+...|++|+||..|-|.. +.| .|+.++
T Consensus 498 VINy~mP~t~e~Y~HRVGRTARAGRaGrsV---tlvgE~ 533 (691)
T KOG0338|consen 498 VINYAMPKTIEHYLHRVGRTARAGRAGRSV---TLVGES 533 (691)
T ss_pred EEeccCchhHHHHHHHhhhhhhcccCcceE---EEeccc
Confidence 99999999999999999999999875 444 466666
No 64
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=5.3e-19 Score=191.46 Aligned_cols=120 Identities=23% Similarity=0.309 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHH----HcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecC
Q 044036 517 KMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLI----RKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTR 592 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~----~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ 592 (875)
|-..+..+|..+ +..++|+|+++.+....|...|. ....++..++|+.+...|.+++.+|+.++.. +||+++
T Consensus 416 kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~--vLIcSD 491 (620)
T KOG0350|consen 416 KPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDIN--VLICSD 491 (620)
T ss_pred chHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCce--EEEehh
Confidence 455677788776 67899999999999888888776 3467788899999999999999999997654 889999
Q ss_pred CcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 593 AGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 593 agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
++++|+|+-..+.||+||||-.-..|.+|+||..|-||..- +|.|+..
T Consensus 492 ~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~--a~tll~~ 539 (620)
T KOG0350|consen 492 ALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY--AITLLDK 539 (620)
T ss_pred hhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce--EEEeecc
Confidence 99999999999999999999999999999999999999754 4566654
No 65
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.82 E-value=5.5e-19 Score=191.63 Aligned_cols=314 Identities=23% Similarity=0.264 Sum_probs=208.8
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~qW 214 (875)
.+.+-|...+.-++. +...+.+.-+|+|||+..+..+..++.+... ...+.-.+|||||+.- ..|-
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~---------~~r~~~~vlIi~PTRELA~Q~ 170 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKF---------KPRNGTGVLIICPTRELAMQI 170 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhccc---------CCCCCeeEEEecccHHHHHHH
Confidence 566777777765554 7799999999999999876655554433211 1123345899999864 4454
Q ss_pred HHH---HHHhc-CCcEEEEe-CCChhHHHHHHHhCCceEEEeecccccccccc---cccccccEEEEcCCccccCcc--c
Q 044036 215 EIE---FSRWS-TFNVSIYH-GPNRDMILEKLEACGVEVLITSFDSYRIHGSI---LSEVNWEIVIVDEAHRLKNEK--S 284 (875)
Q Consensus 215 ~~E---~~k~~-~~~v~v~~-G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~---l~~~~w~~VIiDEAH~ikn~~--S 284 (875)
..| +.++. ...+.+.. |+++....+.+.. ++.++|.|+..+..+... +.-..-+++|+|||.++.... -
T Consensus 171 ~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~ 249 (543)
T KOG0342|consen 171 FAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEE 249 (543)
T ss_pred HHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHH
Confidence 444 44555 34555544 4555566666666 899999999988755332 111233789999999996533 2
Q ss_pred HHHHHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHH
Q 044036 285 KLYMACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363 (875)
Q Consensus 285 ~~~kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~ 363 (875)
.+-+.+..+ ..+..+++|||-- .. ..
T Consensus 250 di~~Ii~~lpk~rqt~LFSAT~~-~k----------------------------------------------------V~ 276 (543)
T KOG0342|consen 250 DVEQIIKILPKQRQTLLFSATQP-SK----------------------------------------------------VK 276 (543)
T ss_pred HHHHHHHhccccceeeEeeCCCc-HH----------------------------------------------------HH
Confidence 344555555 3455588899831 00 00
Q ss_pred HHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCC
Q 044036 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGC 443 (875)
Q Consensus 364 ~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (875)
+ +....|++ + -+|+..-+... ..+ .
T Consensus 277 ~-l~~~~L~~--------------d-~~~v~~~d~~~--------------------------~~T----h--------- 301 (543)
T KOG0342|consen 277 D-LARGALKR--------------D-PVFVNVDDGGE--------------------------RET----H--------- 301 (543)
T ss_pred H-HHHHhhcC--------------C-ceEeecCCCCC--------------------------cch----h---------
Confidence 0 00111111 0 01111000000 000 0
Q ss_pred CCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHH
Q 044036 444 DSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEK 523 (875)
Q Consensus 444 ~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~ 523 (875)
..+.| .+.+ .....++-.|..
T Consensus 302 ------------e~l~Q----gyvv-------------------------------------------~~~~~~f~ll~~ 322 (543)
T KOG0342|consen 302 ------------ERLEQ----GYVV-------------------------------------------APSDSRFSLLYT 322 (543)
T ss_pred ------------hcccc----eEEe-------------------------------------------ccccchHHHHHH
Confidence 00000 0000 011134667888
Q ss_pred HHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCC
Q 044036 524 LMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSA 603 (875)
Q Consensus 524 LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~A 603 (875)
+|++.... .|||||+....+..++...|....+++.-|||..++..|-.+..+|....+. ||++|+++++|+|+++.
T Consensus 323 ~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg--IL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 323 FLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG--ILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc--eEEecchhhccCCCCCc
Confidence 88876543 8999999999999999999999999999999999999999999999987665 99999999999999999
Q ss_pred CEEEEcCCCCCchhHHHhhhcccccCCcce
Q 044036 604 NRVVIFDPNWNPAQDLQAQDRSFRFGQKRH 633 (875)
Q Consensus 604 n~VI~~D~~WNp~~~~QaigR~~RiGQ~k~ 633 (875)
+.||.||||-+|..|++|+||.+|-|-+-.
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 999999999999999999999999776643
No 66
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.81 E-value=1.2e-18 Score=190.41 Aligned_cols=326 Identities=20% Similarity=0.254 Sum_probs=224.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHH-HHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQ-TIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQN 213 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiq-aiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~q 213 (875)
.+.+.|.+.|...+. |+..|-|.-+|+|||+. .+-++..++...+.. ...--+|||.|+. |..|
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~----------~DGlGalIISPTRELA~Q 156 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP----------TDGLGALIISPTRELALQ 156 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCC----------CCCceeEEecchHHHHHH
Confidence 456679999988776 88888999999999998 445666666554432 1233589999975 4555
Q ss_pred HHHHHH---HhcCCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc---ccccccccEEEEcCCccccCcc--cH
Q 044036 214 WEIEFS---RWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS---ILSEVNWEIVIVDEAHRLKNEK--SK 285 (875)
Q Consensus 214 W~~E~~---k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~---~l~~~~w~~VIiDEAH~ikn~~--S~ 285 (875)
--.-+. ++..|....+.|... ...+..+-.+.+|+|||+..+..+.+ .+..-+-.++|+|||.++-... ..
T Consensus 157 tFevL~kvgk~h~fSaGLiiGG~~-~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~t 235 (758)
T KOG0343|consen 157 TFEVLNKVGKHHDFSAGLIIGGKD-VKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKT 235 (758)
T ss_pred HHHHHHHHhhccccccceeecCch-hHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHH
Confidence 444444 444577777666544 23334445567899999999887654 4555577899999999996532 12
Q ss_pred HHHHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHH
Q 044036 286 LYMACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364 (875)
Q Consensus 286 ~~kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~ 364 (875)
+...+..| ..+..+++|||+-. +..||.-| ++-+
T Consensus 236 L~~Ii~~lP~~RQTLLFSATqt~-svkdLaRL-sL~d------------------------------------------- 270 (758)
T KOG0343|consen 236 LNAIIENLPKKRQTLLFSATQTK-SVKDLARL-SLKD------------------------------------------- 270 (758)
T ss_pred HHHHHHhCChhheeeeeecccch-hHHHHHHh-hcCC-------------------------------------------
Confidence 22334444 45566999999842 22222110 0000
Q ss_pred HHHHHHHhhchhHHhhccCCCceeEEEEec-----CCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccC
Q 044036 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCT-----MSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDN 439 (875)
Q Consensus 365 ~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~-----lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 439 (875)
...|.+. -+|.
T Consensus 271 -----------------------P~~vsvhe~a~~atP~----------------------------------------- 286 (758)
T KOG0343|consen 271 -----------------------PVYVSVHENAVAATPS----------------------------------------- 286 (758)
T ss_pred -----------------------CcEEEEeccccccChh-----------------------------------------
Confidence 0111111 0110
Q ss_pred CCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHH
Q 044036 440 LDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMR 519 (875)
Q Consensus 440 ~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~ 519 (875)
.|+|. +++ +..--|+.
T Consensus 287 -----------------~L~Q~----y~~-------------------------------------------v~l~~Ki~ 302 (758)
T KOG0343|consen 287 -----------------NLQQS----YVI-------------------------------------------VPLEDKID 302 (758)
T ss_pred -----------------hhhhe----EEE-------------------------------------------EehhhHHH
Confidence 01100 000 01113888
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccc
Q 044036 520 ALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRK--GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLG 597 (875)
Q Consensus 520 ~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~--g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~G 597 (875)
+|-..|+.+ ...|.|||..+-....++...|... |++...++|.|++..|.++.++|... ..++|++|+++++|
T Consensus 303 ~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~--~~~vLF~TDv~aRG 378 (758)
T KOG0343|consen 303 MLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK--RAVVLFCTDVAARG 378 (758)
T ss_pred HHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh--cceEEEeehhhhcc
Confidence 888888876 4568999999999999999999864 99999999999999999999999873 35799999999999
Q ss_pred cCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHH
Q 044036 598 LNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYK 656 (875)
Q Consensus 598 LNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K 656 (875)
|+++..|.||.||.|-+-..|++|+||..|.+-.-...+ +++.+ -||.+..+...|
T Consensus 379 LDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll--~L~ps-EeE~~l~~Lq~k 434 (758)
T KOG0343|consen 379 LDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLL--MLTPS-EEEAMLKKLQKK 434 (758)
T ss_pred CCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEE--EEcch-hHHHHHHHHHHc
Confidence 999999999999999999999999999999987766544 33333 345555544444
No 67
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.80 E-value=1.3e-17 Score=190.04 Aligned_cols=305 Identities=17% Similarity=0.253 Sum_probs=213.0
Q ss_pred chhhhcccHHHHHHHHHHHHHhhCCC--CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc
Q 044036 131 ASINCRLLEHQREGVKFLYKLYKNKH--GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS 208 (875)
Q Consensus 131 ~~i~~~L~pyQ~~gv~~l~~~~~~~~--ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 208 (875)
..+...|...|+.+++-+..-..... +-+|--|+|+|||+.|+..+..... ...-+...+|+
T Consensus 257 ~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~----------------~G~Q~ALMAPT 320 (677)
T COG1200 257 AALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE----------------AGYQAALMAPT 320 (677)
T ss_pred HhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH----------------cCCeeEEeccH
Confidence 34556888999999998876554442 3467778999999998776666542 45568999998
Q ss_pred chH-HHHHHHHHHhcC---CcEEEEeCC----ChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCcccc
Q 044036 209 SVI-QNWEIEFSRWST---FNVSIYHGP----NRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLK 280 (875)
Q Consensus 209 sLl-~qW~~E~~k~~~---~~v~v~~G~----~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ik 280 (875)
.++ .|-.+.+.+|++ ++|..+.|. .+...+..+..+..+|||-|+..+...... .+..+||+||-|++.
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFG 397 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFG 397 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceee---cceeEEEEecccccc
Confidence 765 667888999976 667777775 466778888889999999999988654442 345899999999984
Q ss_pred CcccHHHHHHHhc-c-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHH
Q 044036 281 NEKSKLYMACLEL-K-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADER 358 (875)
Q Consensus 281 n~~S~~~kal~~l-~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~ 358 (875)
- ..-..+.+- . .++.|.||||||+..+.= ..|.+
T Consensus 398 V---~QR~~L~~KG~~~Ph~LvMTATPIPRTLAl--------------------t~fgD--------------------- 433 (677)
T COG1200 398 V---HQRLALREKGEQNPHVLVMTATPIPRTLAL--------------------TAFGD--------------------- 433 (677)
T ss_pred H---HHHHHHHHhCCCCCcEEEEeCCCchHHHHH--------------------HHhcc---------------------
Confidence 3 344444444 4 589999999999765431 00100
Q ss_pred HHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhcc
Q 044036 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLD 438 (875)
Q Consensus 359 ~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 438 (875)
+.-.+|+++||...+..-++--.+.-.++|..+.+
T Consensus 434 ---------------ldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~------------------------------ 468 (677)
T COG1200 434 ---------------LDVSIIDELPPGRKPITTVVIPHERRPEVYERIRE------------------------------ 468 (677)
T ss_pred ---------------ccchhhccCCCCCCceEEEEeccccHHHHHHHHHH------------------------------
Confidence 01125677777755554444333333344443322
Q ss_pred CCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchH
Q 044036 439 NLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKM 518 (875)
Q Consensus 439 ~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl 518 (875)
T Consensus 469 -------------------------------------------------------------------------------- 468 (677)
T COG1200 469 -------------------------------------------------------------------------------- 468 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcCCCeEEEEecchh--------HHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEE
Q 044036 519 RALEKLMYSWASKGDKILLFSYSVR--------MLDILEKFLIR--KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFL 588 (875)
Q Consensus 519 ~~L~~LL~~~~~~g~KVLIFs~~~~--------~ld~L~~~L~~--~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~L 588 (875)
-..+|+++.+-|.-+. ....+...|+. .++++..+||.|+.+++++++.+|+++... +|
T Consensus 469 ---------ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~--IL 537 (677)
T COG1200 469 ---------EIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID--IL 537 (677)
T ss_pred ---------HHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc--EE
Confidence 1123334433333221 12223333332 267789999999999999999999997665 99
Q ss_pred EecCCcccccCCCCCCEEEEcCCC-CCchhHHHhhhcccccCCcceE
Q 044036 589 ISTRAGGLGLNLVSANRVVIFDPN-WNPAQDLQAQDRSFRFGQKRHV 634 (875)
Q Consensus 589 iSt~agg~GLNL~~An~VI~~D~~-WNp~~~~QaigR~~RiGQ~k~V 634 (875)
+||.+..+|+|+++|+.+||+|+. +--+...|-.||++|=+...-|
T Consensus 538 VaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 538 VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred EEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 999999999999999999999998 8889999999999995544433
No 68
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.80 E-value=8.2e-18 Score=198.95 Aligned_cols=337 Identities=19% Similarity=0.185 Sum_probs=229.2
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN 213 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q 213 (875)
...++|+|+.++..+.+ |.++++..++|+|||..|+.-+...+-+.+. ......=.+|-|.|.--+.|
T Consensus 20 ~~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~--------~~~~~~i~~lYIsPLkALn~ 87 (814)
T COG1201 20 FTSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGK--------GKLEDGIYALYISPLKALNN 87 (814)
T ss_pred cCCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccC--------CCCCCceEEEEeCcHHHHHH
Confidence 45789999999987765 9999999999999999977555443322210 00112335899999654444
Q ss_pred -HHHHHHHhc---CCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccc------ccccccccccEEEEcCCccccCc-
Q 044036 214 -WEIEFSRWS---TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIH------GSILSEVNWEIVIVDEAHRLKNE- 282 (875)
Q Consensus 214 -W~~E~~k~~---~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~------~~~l~~~~w~~VIiDEAH~ikn~- 282 (875)
-..-+..|+ ++.+.+-||+......++.....++|+|||++++... ...|.. -.+|||||.|.+.+.
T Consensus 88 Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~--vr~VIVDEiHel~~sK 165 (814)
T COG1201 88 DIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRD--VRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcC--CcEEEeehhhhhhccc
Confidence 555566664 4888999999888888888888999999999998643 233444 466999999999764
Q ss_pred -ccHHHHHHHhc---c-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHH
Q 044036 283 -KSKLYMACLEL---K-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADE 357 (875)
Q Consensus 283 -~S~~~kal~~l---~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~ 357 (875)
.++++-.+.+| . .-.|++||||- .++++ +..||.++.-
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~~---varfL~g~~~-------------------------------- 208 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATV--GPPEE---VAKFLVGFGD-------------------------------- 208 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhcc--CCHHH---HHHHhcCCCC--------------------------------
Confidence 45666666665 2 46789999994 23333 2233322100
Q ss_pred HHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhc
Q 044036 358 RKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRL 437 (875)
Q Consensus 358 ~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 437 (875)
..+++..-...+.+.-+.++-....
T Consensus 209 -----------------~~~Iv~~~~~k~~~i~v~~p~~~~~-------------------------------------- 233 (814)
T COG1201 209 -----------------PCEIVDVSAAKKLEIKVISPVEDLI-------------------------------------- 233 (814)
T ss_pred -----------------ceEEEEcccCCcceEEEEecCCccc--------------------------------------
Confidence 0001110011111111211110000
Q ss_pred cCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCch
Q 044036 438 DNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGK 517 (875)
Q Consensus 438 ~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K 517 (875)
.. . .=
T Consensus 234 ----------------------------------------------------------~~-------------~----~~ 238 (814)
T COG1201 234 ----------------------------------------------------------YD-------------E----EL 238 (814)
T ss_pred ----------------------------------------------------------cc-------------c----ch
Confidence 00 0 01
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCccc
Q 044036 518 MRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKG-YSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGL 596 (875)
Q Consensus 518 l~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g-~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~ 596 (875)
+..+.+.+.++.++...+|||++...+.+.+...|+..+ ..+..-|||.+.+.|..+-++|+++.- + .+++|.....
T Consensus 239 ~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~l-r-avV~TSSLEL 316 (814)
T COG1201 239 WAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL-K-AVVATSSLEL 316 (814)
T ss_pred hHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCc-e-EEEEccchhh
Confidence 222334444444455689999999999999999999876 888999999999999999999999863 3 7888889999
Q ss_pred ccCCCCCCEEEEcCCCCCchhHHHhhhcc-cccCCcceEEEEEEeeCCCHHHHHHHHHHHHH
Q 044036 597 GLNLVSANRVVIFDPNWNPAQDLQAQDRS-FRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQ 657 (875)
Q Consensus 597 GLNL~~An~VI~~D~~WNp~~~~QaigR~-~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~ 657 (875)
|||+-..|.||.|.+|-.-+...||+||+ ||+|.... ..+++.+ .++.+..+...+.
T Consensus 317 GIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r~dllE~~vi~~~ 374 (814)
T COG1201 317 GIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSK---GIIIAED-RDDLLECLVLADL 374 (814)
T ss_pred ccccCCceEEEEeCCcHHHHHHhHhccccccccCCccc---EEEEecC-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999 56665433 4456666 6776666554443
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.79 E-value=2e-17 Score=194.89 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=101.8
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+.++.+.+.+.+..+.+|||||+++...+.+...|...|+++..++|.+...+|..+...|+.+ -++|+|+.+
T Consensus 407 ~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g----~VlIATdmA 482 (762)
T TIGR03714 407 PEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG----AVTVATSMA 482 (762)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC----eEEEEcccc
Confidence 4689999999998888999999999999999999999999999999999999988887766666553 378999999
Q ss_pred ccccCCC---------CCCEEEEcCCCCCchhHHHhhhcccccCCcceE
Q 044036 595 GLGLNLV---------SANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634 (875)
Q Consensus 595 g~GLNL~---------~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V 634 (875)
|+|+|+. +.++|+.|+++-+... .|++||++|.|..-.+
T Consensus 483 gRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 483 GRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred ccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 9999999 8899999999977644 9999999999887654
No 70
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=5.8e-18 Score=184.51 Aligned_cols=125 Identities=25% Similarity=0.390 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhh--cCCCeEEEEecchhHHHHHHHHHHH----------------------cCCcEEEEeCCCCHHHHHH
Q 044036 518 MRALEKLMYSWA--SKGDKILLFSYSVRMLDILEKFLIR----------------------KGYSFSRLDGSTPSNLRQS 573 (875)
Q Consensus 518 l~~L~~LL~~~~--~~g~KVLIFs~~~~~ld~L~~~L~~----------------------~g~~~~~ldG~~~~~eR~~ 573 (875)
+-.|..+|.+.. ....|+|||....++.+.=...|.. .+.++.+++|+|.+++|..
T Consensus 409 LV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts 488 (708)
T KOG0348|consen 409 LVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTS 488 (708)
T ss_pred HHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHH
Confidence 344566666543 3456899999988887765555532 1457999999999999999
Q ss_pred HHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHH
Q 044036 574 LVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLE 646 (875)
Q Consensus 574 ~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiE 646 (875)
+...|...... +|++|+++++||||+....||-||+|..++.|.+|+||..|+|-+-.-.. |+.+.-.|
T Consensus 489 ~f~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae 557 (708)
T KOG0348|consen 489 VFQEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE 557 (708)
T ss_pred HHHhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH
Confidence 99999986655 89999999999999999999999999999999999999999999865432 44555444
No 71
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.79 E-value=8.3e-18 Score=201.81 Aligned_cols=157 Identities=20% Similarity=0.149 Sum_probs=112.1
Q ss_pred hhcccHHHHHHHHHHHHHhhC------CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC
Q 044036 134 NCRLLEHQREGVKFLYKLYKN------KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP 207 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~------~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P 207 (875)
....|+||..+|+.+.+.+.. .++|++.+.+|+|||++++.++..++.. ....++|||+|
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~--------------~~~~~vl~lvd 301 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL--------------LKNPKVFFVVD 301 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh--------------cCCCeEEEEEC
Confidence 456899999999999888764 4689999999999999999998877532 24578999999
Q ss_pred -cchHHHHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc-ccccc----ccccEEEEcCCccccC
Q 044036 208 -SSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG-SILSE----VNWEIVIVDEAHRLKN 281 (875)
Q Consensus 208 -~sLl~qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~-~~l~~----~~w~~VIiDEAH~ikn 281 (875)
..|..||.++|..+.+..+ ....+.......+......|+|+|.+++.... ..+.. ....+||+||||+...
T Consensus 302 R~~L~~Q~~~~f~~~~~~~~--~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~ 379 (667)
T TIGR00348 302 RRELDYQLMKEFQSLQKDCA--ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY 379 (667)
T ss_pred cHHHHHHHHHHHHhhCCCCC--cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc
Confidence 4799999999999875211 11122333334444445679999999997421 11111 1224899999998632
Q ss_pred cccHHHHHHH-hccccceEEeecCCCCC
Q 044036 282 EKSKLYMACL-ELKTRNRIGLTGTIMQN 308 (875)
Q Consensus 282 ~~S~~~kal~-~l~~~~rllLTGTPiqN 308 (875)
....+.++ .++...+++|||||+..
T Consensus 380 --~~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 380 --GELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred --hHHHHHHHhhCCCCcEEEEeCCCccc
Confidence 23445553 56778999999999853
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=3e-16 Score=183.03 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=106.4
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+.+|.+++...+..+..||||++++...+.|...|...|+++..|+|.+. +|+..+..|...+.. ++|+|+.+
T Consensus 456 ~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~--VlVATdmA 531 (656)
T PRK12898 456 AAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR--ITVATNMA 531 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc--EEEEccch
Confidence 45999999999988777889999999999999999999999999999999865 555566666654443 89999999
Q ss_pred ccccCCC---CCC-----EEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHH
Q 044036 595 GLGLNLV---SAN-----RVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTR 652 (875)
Q Consensus 595 g~GLNL~---~An-----~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~r 652 (875)
|+|+|+. ... +||.||.|-|...|.|++||++|.|..-.+ +.|+ |.|+.++.+
T Consensus 532 gRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s--~~~i---s~eD~l~~~ 592 (656)
T PRK12898 532 GRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY--EAIL---SLEDDLLQS 592 (656)
T ss_pred hcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE--EEEe---chhHHHHHh
Confidence 9999998 444 999999999999999999999999976443 3344 345555543
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.78 E-value=1.5e-17 Score=194.82 Aligned_cols=115 Identities=20% Similarity=0.207 Sum_probs=106.3
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
.|+.++.+.+.+.+..|..|||||+++...+.|...|...|+++..++|. +.+|++.+..|...+.. ++|+|+.+|
T Consensus 389 ~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~--VtIATnmAg 464 (745)
T TIGR00963 389 EKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA--VTIATNMAG 464 (745)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce--EEEEecccc
Confidence 58989988888888999999999999999999999999999999999998 78999999999876654 899999999
Q ss_pred cccCCCC-------CCEEEEcCCCCCchhHHHhhhcccccCCcceE
Q 044036 596 LGLNLVS-------ANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634 (875)
Q Consensus 596 ~GLNL~~-------An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V 634 (875)
+|+|+.. .-+||.++.|-|+..+.|++||++|.|..-..
T Consensus 465 RGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 465 RGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred CCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 9999988 66999999999999999999999999988554
No 74
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.78 E-value=1.8e-17 Score=207.69 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=85.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcC---------------------------------CcEEEEeCCCCHHHHHHHHHH
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKG---------------------------------YSFSRLDGSTPSNLRQSLVDD 577 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g---------------------------------~~~~~ldG~~~~~eR~~~i~~ 577 (875)
.+.++|||+++....+.+...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 56799999999999999998887531 114567899999999999999
Q ss_pred hcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhccccc
Q 044036 578 FNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRF 628 (875)
Q Consensus 578 F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~Ri 628 (875)
|+++.-. +||+|.+.+.|||+...+.||+|+.|.+.+.+.|++||++|.
T Consensus 323 fK~G~Lr--vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR--CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce--EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9997543 899999999999999999999999999999999999999985
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=6.9e-17 Score=192.18 Aligned_cols=128 Identities=19% Similarity=0.199 Sum_probs=109.3
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+.+|..++...+..+.++||||.+....+.|...|...|+++..++|.+...++..+...++.+ -++|+|+.+
T Consensus 411 ~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g----~VlIATdmA 486 (790)
T PRK09200 411 DEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG----AVTVATNMA 486 (790)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC----eEEEEccch
Confidence 4699999999988778899999999999999999999999999999999999888887777776643 288999999
Q ss_pred ccccCC---CCCC-----EEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHH
Q 044036 595 GLGLNL---VSAN-----RVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYT 651 (875)
Q Consensus 595 g~GLNL---~~An-----~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~ 651 (875)
|+|+|+ ..+. +||.+|.|-|+..+.|++||++|.|..-... .|+ |.|+.++.
T Consensus 487 gRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~--~~i---s~eD~l~~ 546 (790)
T PRK09200 487 GRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ--FFI---SLEDDLLK 546 (790)
T ss_pred hcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE--EEE---cchHHHHH
Confidence 999999 4777 9999999999999999999999999875442 333 33555554
No 76
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=1.2e-17 Score=176.52 Aligned_cols=318 Identities=21% Similarity=0.282 Sum_probs=217.3
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHHHHHHHHHhcC---CcEEEE
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQNWEIEFSRWST---FNVSIY 229 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~qW~~E~~k~~~---~~v~v~ 229 (875)
++..+|-...+|.|||+.-+.--.......+.. ........+|++.|.. |..|-+-|..++.. ..+.+|
T Consensus 256 QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~-------~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~y 328 (629)
T KOG0336|consen 256 QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR-------REQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVY 328 (629)
T ss_pred cCcceEEEEecCCCcCHHHhccceeeeeccchh-------hhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEe
Confidence 478899999999999987653211111111110 0123456789999975 55667778887754 567888
Q ss_pred eCCChhHHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCccccCc--ccHHHHHHHhccccceEEe-ecC
Q 044036 230 HGPNRDMILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHRLKNE--KSKLYMACLELKTRNRIGL-TGT 304 (875)
Q Consensus 230 ~G~~r~~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~ikn~--~S~~~kal~~l~~~~rllL-TGT 304 (875)
.|.+|....+.++. +++++|.|+..+... ...++.....++|+|||+++... .-++.+.+..++..+-..| |||
T Consensus 329 gggnR~eqie~lkr-gveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSAT 407 (629)
T KOG0336|consen 329 GGGNRNEQIEDLKR-GVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSAT 407 (629)
T ss_pred cCCCchhHHHHHhc-CceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeeccc
Confidence 88888887777754 689999999988632 23334445689999999999663 4567788888876665554 445
Q ss_pred CCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhccCC
Q 044036 305 IMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMM 384 (875)
Q Consensus 305 PiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp 384 (875)
... -.+.+...|+
T Consensus 408 -WP~----------------------------------------------------~VrrLa~sY~-------------- 420 (629)
T KOG0336|consen 408 -WPE----------------------------------------------------GVRRLAQSYL-------------- 420 (629)
T ss_pred -Cch----------------------------------------------------HHHHHHHHhh--------------
Confidence 100 0111111111
Q ss_pred CceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhcc
Q 044036 385 GKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNH 464 (875)
Q Consensus 385 ~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh 464 (875)
|...++++.--+. ..+.+..
T Consensus 421 -Kep~~v~vGsLdL------------------------------------------~a~~sVk----------------- 440 (629)
T KOG0336|consen 421 -KEPMIVYVGSLDL------------------------------------------VAVKSVK----------------- 440 (629)
T ss_pred -hCceEEEecccce------------------------------------------eeeeeee-----------------
Confidence 2223344321000 0000000
Q ss_pred ccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhhcCCCeEEEEecchhH
Q 044036 465 LELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRM 544 (875)
Q Consensus 465 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ 544 (875)
..+ --...+.|+..+..++.. +...+|||||+....+
T Consensus 441 ---------------------------------------Q~i---~v~~d~~k~~~~~~f~~~-ms~ndKvIiFv~~K~~ 477 (629)
T KOG0336|consen 441 ---------------------------------------QNI---IVTTDSEKLEIVQFFVAN-MSSNDKVIIFVSRKVM 477 (629)
T ss_pred ---------------------------------------eeE---EecccHHHHHHHHHHHHh-cCCCceEEEEEechhh
Confidence 000 001223477777777766 4678999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhc
Q 044036 545 LDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDR 624 (875)
Q Consensus 545 ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR 624 (875)
+|-|..-|...|+....|+|.-.+.+|+.++++|+++.- -+||.|+.+++||++.+..||++||.|-|...|.+|+||
T Consensus 478 AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~v--rILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGr 555 (629)
T KOG0336|consen 478 ADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEV--RILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGR 555 (629)
T ss_pred hhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCce--EEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcc
Confidence 999999999999999999999999999999999998743 389999999999999999999999999999999999999
Q ss_pred ccccCCcceEEEEEEeeCCC---HHHHHHHHH
Q 044036 625 SFRFGQKRHVIVFRLLSAGS---LEELVYTRQ 653 (875)
Q Consensus 625 ~~RiGQ~k~V~VyrLi~~gT---iEE~I~~rq 653 (875)
++|.|.+-.- ..|++.+. .+|.|.-+.
T Consensus 556 tGRaGr~G~s--is~lt~~D~~~a~eLI~ILe 585 (629)
T KOG0336|consen 556 TGRAGRTGTS--ISFLTRNDWSMAEELIQILE 585 (629)
T ss_pred cccCCCCcce--EEEEehhhHHHHHHHHHHHH
Confidence 9999987543 34555542 455544333
No 77
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=3.5e-17 Score=187.24 Aligned_cols=308 Identities=16% Similarity=0.191 Sum_probs=219.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl~qW 214 (875)
..||-|.++|..+++ +..+|.-..+|.||++..-.-. ++ ..|.+|||.| -+|....
T Consensus 17 ~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPA--ll-----------------~~G~TLVVSPLiSLM~DQ 73 (590)
T COG0514 17 SFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPA--LL-----------------LEGLTLVVSPLISLMKDQ 73 (590)
T ss_pred ccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHH--Hh-----------------cCCCEEEECchHHHHHHH
Confidence 467779999998877 7999999999999998643322 21 2568999999 5899999
Q ss_pred HHHHHHhcCCcEEEEeCC----ChhHHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCccccCc------
Q 044036 215 EIEFSRWSTFNVSIYHGP----NRDMILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHRLKNE------ 282 (875)
Q Consensus 215 ~~E~~k~~~~~v~v~~G~----~r~~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~ikn~------ 282 (875)
.+.+...+ ..+..+++. .+..+...+..+.++++..+++.+... .+.|...+..+++|||||.+...
T Consensus 74 V~~l~~~G-i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 74 VDQLEAAG-IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHHHHHcC-ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 99988876 455444443 345667777788899999999998754 34556778899999999998543
Q ss_pred -ccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHH
Q 044036 283 -KSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361 (875)
Q Consensus 283 -~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 361 (875)
..........+....+++||||.-.---.|+...|..-.+.
T Consensus 153 ~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~-------------------------------------- 194 (590)
T COG0514 153 DYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDAN-------------------------------------- 194 (590)
T ss_pred hHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcc--------------------------------------
Confidence 34455555666777899999996432222222222211110
Q ss_pred HHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCC
Q 044036 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLD 441 (875)
Q Consensus 362 L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (875)
++..-.+..--.|....
T Consensus 195 -----------------------------~~~~sfdRpNi~~~v~~---------------------------------- 211 (590)
T COG0514 195 -----------------------------IFRGSFDRPNLALKVVE---------------------------------- 211 (590)
T ss_pred -----------------------------eEEecCCCchhhhhhhh----------------------------------
Confidence 00000000000000000
Q ss_pred CCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCc--hHH
Q 044036 442 GCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCG--KMR 519 (875)
Q Consensus 442 ~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--Kl~ 519 (875)
...+ ++.
T Consensus 212 -----------------------------------------------------------------------~~~~~~q~~ 220 (590)
T COG0514 212 -----------------------------------------------------------------------KGEPSDQLA 220 (590)
T ss_pred -----------------------------------------------------------------------cccHHHHHH
Confidence 0001 222
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccC
Q 044036 520 ALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLN 599 (875)
Q Consensus 520 ~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLN 599 (875)
.|.+ .....+...||||.+....+.+...|...|++...+||+++.++|+.+-++|.+++.. ++++|.|.|-|||
T Consensus 221 fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~--iiVAT~AFGMGId 295 (590)
T COG0514 221 FLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK--VMVATNAFGMGID 295 (590)
T ss_pred HHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc--EEEEeccccCccC
Confidence 2222 1223445589999999999999999999999999999999999999999999987665 8999999999999
Q ss_pred CCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHH
Q 044036 600 LVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLE 646 (875)
Q Consensus 600 L~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiE 646 (875)
=++...||+||+|-+...|.|=+|||+|-|..-.+ +-|...+.+.
T Consensus 296 KpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~a--ill~~~~D~~ 340 (590)
T COG0514 296 KPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEA--ILLYSPEDIR 340 (590)
T ss_pred CCCceEEEEecCCCCHHHHHHHHhhccCCCCcceE--EEeeccccHH
Confidence 99999999999999999999999999999987665 4466655543
No 78
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=1.4e-17 Score=180.16 Aligned_cols=126 Identities=23% Similarity=0.345 Sum_probs=112.5
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
.||.+|.+-|......| +||||..-....+-|...|..+|+++..++|++.+.+|.+++.+|+..... +|+.|++.+
T Consensus 453 ~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~--VlvatDvaa 529 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP--VLVATDVAA 529 (731)
T ss_pred HHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc--eEEEeeHhh
Confidence 37888777777655444 899999999999999999999999999999999999999999999986554 899999999
Q ss_pred cccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHH
Q 044036 596 LGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLE 646 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiE 646 (875)
+||++....+||+||.--......|+|||.+|-|-+ -..|.|+++-..+
T Consensus 530 rgldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 530 RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred cCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 999999999999999999999999999999999987 4569999976665
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.77 E-value=2.9e-17 Score=205.46 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhH---HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe--
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRM---LDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS-- 590 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~---ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS-- 590 (875)
.|...|.+++..+ +..+|||++.... ++.|..+|...|+++..++|++ .+.+++|.++.. . +||+
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~-~-VLVata 384 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEV-D-VLVGVA 384 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCC-C-EEEEec
Confidence 3677788888764 4689999998777 9999999999999999999999 234699998754 3 5555
Q ss_pred --cCCcccccCCCC-CCEEEEcCCCC------CchhHHHhhhccccc
Q 044036 591 --TRAGGLGLNLVS-ANRVVIFDPNW------NPAQDLQAQDRSFRF 628 (875)
Q Consensus 591 --t~agg~GLNL~~-An~VI~~D~~W------Np~~~~QaigR~~Ri 628 (875)
|+++++|||++. ..+||+||.|- ....+.+++||+-.+
T Consensus 385 s~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 385 SYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 799999999999 89999999997 667788888888643
No 80
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.77 E-value=1.3e-16 Score=188.86 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=90.6
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHhc-CCCCceEEEEecCCcccccCCCCCCEEE
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRK--GYSFSRLDGSTPSNLRQSLVDDFN-SSPSKQVFLISTRAGGLGLNLVSANRVV 607 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~--g~~~~~ldG~~~~~eR~~~i~~F~-~~~~~~v~LiSt~agg~GLNL~~An~VI 607 (875)
.+.++|||+.....++.+...|... ++.+..++|++++. ++.+++|. ++ ..-+|+||+.+++||++.++++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~g--k~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSK--NPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccC--ceeEEeccChhhccccccCeeEEE
Confidence 4568999999999999999999887 79999999999964 56777874 43 245899999999999999999999
Q ss_pred EcC----CC--------CCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 608 IFD----PN--------WNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 608 ~~D----~~--------WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
.++ |. .+.+.+.||.||++|. ++-.+|+|+++...
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHh
Confidence 997 32 2667889999999997 46788999988765
No 81
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.75 E-value=3.2e-18 Score=187.10 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=96.7
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCC
Q 044036 532 GDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDP 611 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~ 611 (875)
..+.||||++++.+..|.-+|...+++...||..|-+.+|.+.+.+|.+.++. +||+|+++++||++++..|||.|..
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~--VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG--VLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe--EEEeehhhhccCCCCCcceEEEeec
Confidence 45899999999999999999999999999999999999999999999997776 9999999999999999999999999
Q ss_pred CCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 612 NWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 612 ~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
|-....|.+|-||..|-+.. .|.| .|+.++
T Consensus 541 PrtseiYVHRSGRTARA~~~-Gvsv-ml~~P~ 570 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSE-GVSV-MLCGPQ 570 (731)
T ss_pred CCccceeEecccccccccCC-CeEE-EEeChH
Confidence 99999999999999997653 3433 344443
No 82
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.75 E-value=2.9e-17 Score=172.38 Aligned_cols=129 Identities=16% Similarity=0.263 Sum_probs=113.6
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
+|+-.|.+-|.+ ..-+||||+....-.|-|..||--+|+..+.|+|+..+++|...|..|+.+... +|+.|++++
T Consensus 408 aKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD--VLVATDVAS 482 (610)
T KOG0341|consen 408 AKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD--VLVATDVAS 482 (610)
T ss_pred hhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc--eEEEecchh
Confidence 477677777665 677999999999999999999999999999999999999999999999997665 899999999
Q ss_pred cccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHH
Q 044036 596 LGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYT 651 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~ 651 (875)
-||++++..+||+||.|-....|.+||||.+|-|.+-=. -.||.+++-|..+.+
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA--TTfINK~~~esvLlD 536 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA--TTFINKNQEESVLLD 536 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee--eeeecccchHHHHHH
Confidence 999999999999999999999999999999999987543 346777776665554
No 83
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.74 E-value=3.7e-17 Score=181.21 Aligned_cols=309 Identities=18% Similarity=0.210 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHH-HHHHHHH
Q 044036 141 QREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQ-NWEIEFS 219 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~-qW~~E~~ 219 (875)
|..+|...+. +-.-|+-.--|+|||+....++..-+. ......-.+||+|+.-+. |...-+.
T Consensus 52 QaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~-------------~~~~~~q~~Iv~PTREiaVQI~~tv~ 114 (980)
T KOG4284|consen 52 QAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLD-------------SRSSHIQKVIVTPTREIAVQIKETVR 114 (980)
T ss_pred hhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcC-------------cccCcceeEEEecchhhhhHHHHHHH
Confidence 8888876544 556788889999999984333332221 122344589999986554 4555555
Q ss_pred Hhc----CCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCccccCcccH---HHHHH
Q 044036 220 RWS----TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHRLKNEKSK---LYMAC 290 (875)
Q Consensus 220 k~~----~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~ikn~~S~---~~kal 290 (875)
+.+ ++++.+|.|...-. +........+|+|-|+..+... .+.++.-..+++|+|||+.+-...|- +...+
T Consensus 115 ~v~~sf~g~~csvfIGGT~~~-~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii 193 (980)
T KOG4284|consen 115 KVAPSFTGARCSVFIGGTAHK-LDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIII 193 (980)
T ss_pred HhcccccCcceEEEecCchhh-hhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHH
Confidence 544 38899998875432 1222233457999999987643 34666677899999999999776654 44556
Q ss_pred Hhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 044036 291 LEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKY 369 (875)
Q Consensus 291 ~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~~ 369 (875)
..+ ..+..++.|||=-+| +++ .|.++++.-
T Consensus 194 ~slP~~rQv~a~SATYp~n-Ldn------------------------------------------------~Lsk~mrdp 224 (980)
T KOG4284|consen 194 NSLPQIRQVAAFSATYPRN-LDN------------------------------------------------LLSKFMRDP 224 (980)
T ss_pred HhcchhheeeEEeccCchh-HHH------------------------------------------------HHHHHhccc
Confidence 666 456678899993211 111 122222211
Q ss_pred HHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCcc
Q 044036 370 LLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFC 449 (875)
Q Consensus 370 ~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (875)
+|-|...+.. .++--+...++.|......
T Consensus 225 ~lVr~n~~d~-~L~GikQyv~~~~s~nnsv-------------------------------------------------- 253 (980)
T KOG4284|consen 225 ALVRFNADDV-QLFGIKQYVVAKCSPNNSV-------------------------------------------------- 253 (980)
T ss_pred ceeecccCCc-eeechhheeeeccCCcchH--------------------------------------------------
Confidence 1111111100 0000011111111100000
Q ss_pred chhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhh
Q 044036 450 LVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWA 529 (875)
Q Consensus 450 ~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~ 529 (875)
.+ .--|++.|-.++..+
T Consensus 254 ---------------------------------ee-----------------------------mrlklq~L~~vf~~i- 270 (980)
T KOG4284|consen 254 ---------------------------------EE-----------------------------MRLKLQKLTHVFKSI- 270 (980)
T ss_pred ---------------------------------HH-----------------------------HHHHHHHHHHHHhhC-
Confidence 00 002777777777765
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEc
Q 044036 530 SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIF 609 (875)
Q Consensus 530 ~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~ 609 (875)
+=...||||....-++-|..+|...|+++..|.|.|++.+|..+++.+++- ..-+||||+..++||+-..+|-||++
T Consensus 271 -py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f--~~rILVsTDLtaRGIDa~~vNLVVNi 347 (980)
T KOG4284|consen 271 -PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF--RVRILVSTDLTARGIDADNVNLVVNI 347 (980)
T ss_pred -chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc--eEEEEEecchhhccCCccccceEEec
Confidence 445789999999999999999999999999999999999999999998763 23499999999999999999999999
Q ss_pred CCCCCchhHHHhhhcccccCCcce
Q 044036 610 DPNWNPAQDLQAQDRSFRFGQKRH 633 (875)
Q Consensus 610 D~~WNp~~~~QaigR~~RiGQ~k~ 633 (875)
|++-+...|.+|||||+|+|...-
T Consensus 348 D~p~d~eTY~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 348 DAPADEETYFHRIGRAGRFGAHGA 371 (980)
T ss_pred CCCcchHHHHHHhhhcccccccce
Confidence 999999999999999999998643
No 84
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=7e-18 Score=173.36 Aligned_cols=120 Identities=23% Similarity=0.344 Sum_probs=105.1
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
-|+.-|..|+.++ .-...||||+++...++|.......||++.+++..|.++.|..+..+|.++.- -.|++|+...
T Consensus 308 qKvhCLntLfskL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~c--rnLVctDL~T 383 (459)
T KOG0326|consen 308 QKVHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKC--RNLVCTDLFT 383 (459)
T ss_pred hhhhhHHHHHHHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcccc--ceeeehhhhh
Confidence 4677777777776 34578999999999999999999999999999999999999999999998643 3788899999
Q ss_pred cccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEee
Q 044036 596 LGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLS 641 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~ 641 (875)
+|+++++.|.||+||.|-|+..|++|+||.+|+|--- ....||+
T Consensus 384 RGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLit 427 (459)
T KOG0326|consen 384 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLIT 427 (459)
T ss_pred cccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEe
Confidence 9999999999999999999999999999999999753 2345554
No 85
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.73 E-value=2.4e-16 Score=191.63 Aligned_cols=332 Identities=17% Similarity=0.156 Sum_probs=229.8
Q ss_pred chhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-c
Q 044036 131 ASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-S 209 (875)
Q Consensus 131 ~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-s 209 (875)
.++.. |+.||.++++.+.+ +++.|+.-.||+|||...+..+...+-+. ...+.|+|=|. .
T Consensus 66 ~g~~~-lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~--------------~~a~AL~lYPtnA 126 (851)
T COG1205 66 AGIER-LYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRD--------------PSARALLLYPTNA 126 (851)
T ss_pred hcccc-ccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhC--------------cCccEEEEechhh
Confidence 33444 99999999998876 89999999999999999665555443222 34478999995 5
Q ss_pred hHHHHHHHHHHhcC-----CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc-----cc-cccccccEEEEcCCcc
Q 044036 210 VIQNWEIEFSRWST-----FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG-----SI-LSEVNWEIVIVDEAHR 278 (875)
Q Consensus 210 Ll~qW~~E~~k~~~-----~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~-----~~-l~~~~w~~VIiDEAH~ 278 (875)
|.....+.|.+|.. ..+.+|+|+......+.+..+..+|++|+|+|+.... .+ ....++.+||+||+|.
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 66778888888843 6788999998877777777888999999999986421 11 1112489999999999
Q ss_pred ccCc-ccHHHHHHHhcc--------ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcc-hhccCCCCCch
Q 044036 279 LKNE-KSKLYMACLELK--------TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDE-PLKHGQRLTAP 348 (875)
Q Consensus 279 ikn~-~S~~~kal~~l~--------~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~-~i~~g~~~~~~ 348 (875)
.+.. .|...-.+++|. ....++.|||- ++..+|...+.. +...
T Consensus 207 YrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~------- 259 (851)
T COG1205 207 YRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEV------- 259 (851)
T ss_pred ccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCccee-------
Confidence 9874 667776676662 34558899983 222333222211 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhccCCC-ceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCC
Q 044036 349 ERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMG-KEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSP 427 (875)
Q Consensus 349 ~~~~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~-k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~ 427 (875)
.+-..--|. ....+++-+........
T Consensus 260 ----------------------------~v~~~g~~~~~~~~~~~~p~~~~~~~~------------------------- 286 (851)
T COG1205 260 ----------------------------PVDEDGSPRGLRYFVRREPPIRELAES------------------------- 286 (851)
T ss_pred ----------------------------eccCCCCCCCceEEEEeCCcchhhhhh-------------------------
Confidence 000000111 11112221111110000
Q ss_pred chhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCcccc
Q 044036 428 LTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFI 507 (875)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 507 (875)
T Consensus 287 -------------------------------------------------------------------------------- 286 (851)
T COG1205 287 -------------------------------------------------------------------------------- 286 (851)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHH----HHHHHcC----CcEEEEeCCCCHHHHHHHHHHhc
Q 044036 508 GLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILE----KFLIRKG----YSFSRLDGSTPSNLRQSLVDDFN 579 (875)
Q Consensus 508 ~~~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~----~~L~~~g----~~~~~ldG~~~~~eR~~~i~~F~ 579 (875)
..-.++..+..++.....++-|.|+|+.+...+..+. ..+...+ ..+....|++...+|..+...|+
T Consensus 287 -----~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~ 361 (851)
T COG1205 287 -----IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFK 361 (851)
T ss_pred -----cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHh
Confidence 0002555566677777778999999999999998886 4444445 66888999999999999999999
Q ss_pred CCCCceEEEEecCCcccccCCCCCCEEEEcCCCC-CchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHH
Q 044036 580 SSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNW-NPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVY 650 (875)
Q Consensus 580 ~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~W-Np~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~ 650 (875)
.+.-. ++++|.|.-.|+++.+.+.||..-.|- .-....|+.||++|-||.-- ++.....+-++....
T Consensus 362 ~g~~~--~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l--~~~v~~~~~~d~yy~ 429 (851)
T COG1205 362 EGELL--GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESL--VLVVLRSDPLDSYYL 429 (851)
T ss_pred cCCcc--EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCce--EEEEeCCCccchhhh
Confidence 97655 899999999999999999999999888 77899999999999995433 333333555665544
No 86
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.73 E-value=3.2e-16 Score=175.27 Aligned_cols=85 Identities=19% Similarity=0.289 Sum_probs=72.0
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEE
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKG--YSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI 608 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g--~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~ 608 (875)
++.|+|||++....++.+...|...| +.+..++|.+++.+|.+.. ...+||+|++.++|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--------~~~iLVaTdv~~rGiDi~~-~~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--------QFDILLGTSTVDVGVDFKR-DWLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--------cCCEEEEecHHhcccCCCC-ceEE-
Confidence 57899999999999999999999865 5788999999999987653 1248999999999999986 4666
Q ss_pred cCCCCCchhHHHhhhccc
Q 044036 609 FDPNWNPAQDLQAQDRSF 626 (875)
Q Consensus 609 ~D~~WNp~~~~QaigR~~ 626 (875)
++ +-++..+.||+||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 66 568899999999985
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.73 E-value=1.6e-15 Score=182.30 Aligned_cols=150 Identities=20% Similarity=0.155 Sum_probs=106.5
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..|.++|.+++..+.... .+...+|...+|+|||...+.++...+. ..+.+||++|. .|..|
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~----------------~g~~vLvLvPt~~L~~Q 205 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLA----------------QGKQALVLVPEIALTPQ 205 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHH----------------cCCeEEEEeCcHHHHHH
Confidence 369999999999887643 3456788899999999998877766542 24579999996 68899
Q ss_pred HHHHHHHhcCCcEEEEeCCChh----HHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCc--ccHHH
Q 044036 214 WEIEFSRWSTFNVSIYHGPNRD----MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNE--KSKLY 287 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~~G~~r~----~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~--~S~~~ 287 (875)
|.+.|.++++..+.++||.... .....+..+..+|||.|+..+. +.--+..+||+||+|...-. ....+
T Consensus 206 ~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 206 MLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred HHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCC
Confidence 9999999888889999986432 2233344567899999987653 11235689999999986321 11111
Q ss_pred --H--H-H-HhccccceEEeecCCC
Q 044036 288 --M--A-C-LELKTRNRIGLTGTIM 306 (875)
Q Consensus 288 --k--a-l-~~l~~~~rllLTGTPi 306 (875)
+ + + ........+++||||.
T Consensus 281 ~~r~va~~ra~~~~~~~il~SATps 305 (679)
T PRK05580 281 HARDLAVVRAKLENIPVVLGSATPS 305 (679)
T ss_pred cHHHHHHHHhhccCCCEEEEcCCCC
Confidence 1 1 1 1234456789999995
No 88
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.71 E-value=9.8e-17 Score=184.82 Aligned_cols=360 Identities=14% Similarity=0.158 Sum_probs=218.9
Q ss_pred CcccCCchhhhcccHHHHHHHHHHHHHhhCCC-CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEE
Q 044036 125 PIIQVPASINCRLLEHQREGVKFLYKLYKNKH-GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVL 203 (875)
Q Consensus 125 ~~~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~-ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~L 203 (875)
+..+.|..-...+|+||..+|+.+.+.+.+++ .++|...+|+|||.+||+++..++. .+..+++|
T Consensus 154 ~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r--------------~~~~KRVL 219 (875)
T COG4096 154 QLAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK--------------SGWVKRVL 219 (875)
T ss_pred ccccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh--------------cchhheee
Confidence 44556665667899999999999999998764 5788999999999999999998874 34688999
Q ss_pred EEcC-cchHHHHHHHHHHhcCCc--EEEEeCCChhHHHHHHHhCCceEEEeecccccccc-------cccccccccEEEE
Q 044036 204 IICP-SSVIQNWEIEFSRWSTFN--VSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG-------SILSEVNWEIVIV 273 (875)
Q Consensus 204 IV~P-~sLl~qW~~E~~k~~~~~--v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~-------~~l~~~~w~~VIi 273 (875)
.++- .+|+.|=..+|..|.|.. +..+.+..- ...++|++.||.++.... ..+..-.||+||+
T Consensus 220 FLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvI 291 (875)
T COG4096 220 FLADRNALVDQAYGAFEDFLPFGTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVI 291 (875)
T ss_pred EEechHHHHHHHHHHHHHhCCCccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEe
Confidence 9999 688999999999999832 222222211 114689999999987432 2233446899999
Q ss_pred cCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHH
Q 044036 274 DEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIR 353 (875)
Q Consensus 274 DEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~ 353 (875)
||||+= ....++.+...-...+++|||||-..--.+-+.+ |. ..|+-...
T Consensus 292 DEaHRg---i~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~--------------F~---g~Pt~~Ys---------- 341 (875)
T COG4096 292 DEAHRG---IYSEWSSILDYFDAATQGLTATPKETIDRSTYGF--------------FN---GEPTYAYS---------- 341 (875)
T ss_pred chhhhh---HHhhhHHHHHHHHHHHHhhccCcccccccccccc--------------cC---CCcceeec----------
Confidence 999983 2334445555555667778999964211111111 11 22221100
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEE--ecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhH
Q 044036 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVF--CTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQV 431 (875)
Q Consensus 354 ~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~--~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 431 (875)
| ++-|.+..+-+....-+. .+.... .|....+.
T Consensus 342 --------l------------eeAV~DGfLvpy~vi~i~~~~~~~G~---~~~~~ser---------------------- 376 (875)
T COG4096 342 --------L------------EEAVEDGFLVPYKVIRIDTDFDLDGW---KPDAGSER---------------------- 376 (875)
T ss_pred --------H------------HHHhhccccCCCCceEEeeeccccCc---CcCccchh----------------------
Confidence 0 111222222221111111 111000 00000000
Q ss_pred HHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCC
Q 044036 432 ECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSD 511 (875)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (875)
.-.|-..+.. ++... .....+. .
T Consensus 377 -----------------------------ek~~g~~i~~---------------------dd~~~-~~~d~dr---~--- 399 (875)
T COG4096 377 -----------------------------EKLQGEAIDE---------------------DDQNF-EARDFDR---T--- 399 (875)
T ss_pred -----------------------------hhhhccccCc---------------------ccccc-cccccch---h---
Confidence 0000000000 00000 0000000 0
Q ss_pred cccCchHHHHHHHHHHhhcC---C---CeEEEEecchhHHHHHHHHHHHc----C-CcEEEEeCCCCHHHHHHHHHHhcC
Q 044036 512 VKSCGKMRALEKLMYSWASK---G---DKILLFSYSVRMLDILEKFLIRK----G-YSFSRLDGSTPSNLRQSLVDDFNS 580 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~---g---~KVLIFs~~~~~ld~L~~~L~~~----g-~~~~~ldG~~~~~eR~~~i~~F~~ 580 (875)
...-.-.+.+...|.....+ | .|.||||.....++.|...|... + -=+..|+|... +-++.|++|..
T Consensus 400 ~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ 477 (875)
T COG4096 400 LVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFID 477 (875)
T ss_pred ccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHh
Confidence 00011233344444443333 3 59999999999999999999763 2 23456777754 45668999987
Q ss_pred CCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhccccc-------CCcc-eEEEEEEe
Q 044036 581 SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRF-------GQKR-HVIVFRLL 640 (875)
Q Consensus 581 ~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~Ri-------GQ~k-~V~VyrLi 640 (875)
......|.+|.+....|+|...+..+|++-.--+-..+.|.+||.-|+ ||.| ..+|+.++
T Consensus 478 ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 478 KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 555567899999999999999999999999999999999999999995 3333 35566664
No 89
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=7.9e-16 Score=161.73 Aligned_cols=128 Identities=22% Similarity=0.273 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCccc
Q 044036 517 KMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGL 596 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~ 596 (875)
|+.+|.+|..- ..- ...||||+...+..+|...|...|+.+..++|.+..++|.+++++|+.+... +||+|.+.++
T Consensus 317 K~~~l~~lyg~-~ti-gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k--VLitTnV~AR 392 (477)
T KOG0332|consen 317 KYQALVNLYGL-LTI-GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK--VLITTNVCAR 392 (477)
T ss_pred HHHHHHHHHhh-hhh-hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce--EEEEechhhc
Confidence 77777774432 222 3579999999999999999999999999999999999999999999998765 8999999999
Q ss_pred ccCCCCCCEEEEcCCCC------CchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHH
Q 044036 597 GLNLVSANRVVIFDPNW------NPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVY 650 (875)
Q Consensus 597 GLNL~~An~VI~~D~~W------Np~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~ 650 (875)
|++....+.||+||.|- .|..|++||||++|+|.+.- +++|+-.+--=+.+.
T Consensus 393 GiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~--a~n~v~~~~s~~~mn 450 (477)
T KOG0332|consen 393 GIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGL--AINLVDDKDSMNIMN 450 (477)
T ss_pred ccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccce--EEEeecccCcHHHHH
Confidence 99999999999999984 67899999999999997643 355776544333333
No 90
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.70 E-value=9.3e-17 Score=152.82 Aligned_cols=120 Identities=32% Similarity=0.503 Sum_probs=112.1
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
.|...+..++.+....+.++|||+.+...++.+...|...+..+..++|+++..+|..+++.|+++. ..+|++|.+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChhh
Confidence 6999999999988767899999999999999999999998999999999999999999999999876 45888999999
Q ss_pred cccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEE
Q 044036 596 LGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVF 637 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~Vy 637 (875)
+|+|++.+++||+++++||+..+.|++||++|.||+..|.+|
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999998887764
No 91
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.69 E-value=3.8e-15 Score=180.56 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=93.5
Q ss_pred CCeEEEEecchhHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEE
Q 044036 532 GDKILLFSYSVRMLDILEKFLIR---KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI 608 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~---~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~ 608 (875)
+.++|||......++.+...|.. .++.+..++|+++.++|.++++.|.++. .-+|+||+++..||++.++++||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~--rkVlVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR--RKVVLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC--eEEEEecchHhhcccccCceEEEE
Confidence 46799999999999999999987 4789999999999999999999998754 348899999999999999999999
Q ss_pred cCCC----CCchh--------------HHHhhhcccccCCcceEEEEEEeeCCC
Q 044036 609 FDPN----WNPAQ--------------DLQAQDRSFRFGQKRHVIVFRLLSAGS 644 (875)
Q Consensus 609 ~D~~----WNp~~--------------~~QaigR~~RiGQ~k~V~VyrLi~~gT 644 (875)
++.+ |||.. ..||.||++|. ++-.+|+|+++..
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 9875 56654 68999999996 5677899998653
No 92
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.68 E-value=1e-15 Score=183.60 Aligned_cols=155 Identities=21% Similarity=0.211 Sum_probs=109.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl~qW 214 (875)
+|+|.|..+|.-.+. .+.++|++.+||+|||+.|...+...+.+ ..++++.||| .+|..+=
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~---------------~~~k~vYivPlkALa~Ek 92 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLE---------------GGGKVVYIVPLKALAEEK 92 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHh---------------cCCcEEEEeChHHHHHHH
Confidence 899999999976543 27899999999999999998887766532 2678999999 5788888
Q ss_pred HHHHHHh--cCCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc--ccccccccEEEEcCCccccCc-c-----c
Q 044036 215 EIEFSRW--STFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS--ILSEVNWEIVIVDEAHRLKNE-K-----S 284 (875)
Q Consensus 215 ~~E~~k~--~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l~~~~w~~VIiDEAH~ikn~-~-----S 284 (875)
.++|.+| ++++|.+++|+..... + ...+++|+|+||+.+-.... ..-....++||+||+|.+..+ . +
T Consensus 93 ~~~~~~~~~~GirV~~~TgD~~~~~-~--~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 93 YEEFSRLEELGIRVGISTGDYDLDD-E--RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred HHHhhhHHhcCCEEEEecCCcccch-h--hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehh
Confidence 9999955 5589999999865432 1 23467899999998752211 112235689999999999775 2 1
Q ss_pred HHHHHHHhccccceEEeecCCCCCCHHHH
Q 044036 285 KLYMACLELKTRNRIGLTGTIMQNKIMEL 313 (875)
Q Consensus 285 ~~~kal~~l~~~~rllLTGTPiqN~~~El 313 (875)
-.++....-..-+.++||||- .|+.|+
T Consensus 170 iv~r~~~~~~~~rivgLSATl--pN~~ev 196 (766)
T COG1204 170 IVARMRRLNELIRIVGLSATL--PNAEEV 196 (766)
T ss_pred HHHHHHhhCcceEEEEEeeec--CCHHHH
Confidence 222222222224668999994 244443
No 93
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.67 E-value=3e-15 Score=176.43 Aligned_cols=122 Identities=22% Similarity=0.280 Sum_probs=111.4
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
.|+..|.+||..+.. ..++|||++...-+|.|..-|...||.+..++|..++.+|...+.+|+++... +|+.|...+
T Consensus 598 eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~--LLvaTsvva 674 (997)
T KOG0334|consen 598 EKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVN--LLVATSVVA 674 (997)
T ss_pred HHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCce--EEEehhhhh
Confidence 488899999998875 66899999999999999999999999999999999999999999999997654 999999999
Q ss_pred cccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 596 LGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
.||+...-..||+||.+--...|.+|.||++|.|.+. ..|.|+..
T Consensus 675 rGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 675 RGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred cccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 9999999999999999988888999999999999887 55667776
No 94
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.67 E-value=2.8e-15 Score=187.94 Aligned_cols=127 Identities=18% Similarity=0.212 Sum_probs=92.5
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..+.|+|..++..++. ++..++..++|+|||.-++.++..+. ....++|||+|+ .|+.|
T Consensus 77 ~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~----------------~~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLA----------------KKGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred CCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHH----------------hcCCeEEEEeCHHHHHHH
Confidence 3577889999887765 78889999999999975554443331 124679999996 67889
Q ss_pred HHHHHHHhcC---Cc---EEEEeCCChh----HHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCc
Q 044036 214 WEIEFSRWST---FN---VSIYHGPNRD----MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNE 282 (875)
Q Consensus 214 W~~E~~k~~~---~~---v~v~~G~~r~----~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~ 282 (875)
+.+++.+++. +. +..+||.... .....+..++++|+|+|+..+......+.. .++++|+||||++-..
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhc
Confidence 9999988864 23 2347776432 233445566799999999988766555544 7899999999998653
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=1.1e-14 Score=169.21 Aligned_cols=126 Identities=20% Similarity=0.169 Sum_probs=88.9
Q ss_pred EecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHHHHHHHhcCCcEEEEeCCChh---
Q 044036 160 LGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWEIEFSRWSTFNVSIYHGPNRD--- 235 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~~E~~k~~~~~v~v~~G~~r~--- 235 (875)
|--.+|+|||...+.++...+. ..+.+|||+|. +|..|+.+.|.+.++.++.++||....
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~----------------~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLA----------------LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEK 65 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHH----------------cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHH
Confidence 4458999999998877776643 24569999995 689999999999888888899986422
Q ss_pred -HHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCcccc--CcccHHH------HHHHhccccceEEeecCCC
Q 044036 236 -MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLK--NEKSKLY------MACLELKTRNRIGLTGTIM 306 (875)
Q Consensus 236 -~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ik--n~~S~~~------kal~~l~~~~rllLTGTPi 306 (875)
.....+..+..+|||+|+..+-. .-.+.++|||||+|... ......+ ...........+++||||.
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 23334455678899999886632 12356999999999863 2222111 1222335567899999995
No 96
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.66 E-value=1.1e-14 Score=176.95 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=93.2
Q ss_pred CCCeEEEEecchhHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEE
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIR---KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVV 607 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~---~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI 607 (875)
.+..+|||......++.+...|.. .++.+..++|+++.++|++++..|.++. .-+|++|+++..||++.++++||
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~--rkVlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGR--RKVVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCC--eEEEEecchHHhcccccCceEEE
Confidence 357899999999999999999986 5788999999999999999999998753 44899999999999999999999
Q ss_pred EcCCC----CCc--------------hhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 608 IFDPN----WNP--------------AQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 608 ~~D~~----WNp--------------~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
.++.+ |+| +.+.||.||++|. .+-.+|||+++...
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 97654 333 2578999999886 47789999986543
No 97
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=2.2e-15 Score=167.69 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=106.3
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHH-HHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFL-IRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L-~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
+|+-++.+++..-. .-.+|||.|+......|...| ...++++..++|.-++.+|...+++|+.+.- -+||+|+..
T Consensus 373 ~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I--wvLicTdll 448 (593)
T KOG0344|consen 373 GKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI--WVLICTDLL 448 (593)
T ss_pred hHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCe--eEEEehhhh
Confidence 68888888888753 347999999999999999999 7789999999999999999999999998643 489999999
Q ss_pred ccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 595 GLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 595 g~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
++|+++.++|.||+||.+-.-..|++++||++|-|+.-.. |.|.+.
T Consensus 449 ~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A--itfytd 494 (593)
T KOG0344|consen 449 ARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA--ITFYTD 494 (593)
T ss_pred hccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce--EEEecc
Confidence 9999999999999999999999999999999999987443 334444
No 98
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.65 E-value=5.2e-16 Score=156.72 Aligned_cols=151 Identities=25% Similarity=0.395 Sum_probs=109.5
Q ss_pred hcccHHHHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-ch
Q 044036 135 CRLLEHQREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SV 210 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sL 210 (875)
..|||||.+++.-+.+.+... ..+++..+||+|||++++.++..+.. ++|||||. +|
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------------------~~l~~~p~~~l 62 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------------------KVLIVAPNISL 62 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------------------EEEEEESSHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------------------ceeEecCHHHH
Confidence 379999999999999888765 78899999999999999998887741 79999996 88
Q ss_pred HHHHHHHHHHhcCCcEEEEe--------------CCChhHHHHHHHhCCceEEEeecccccccccc-------------c
Q 044036 211 IQNWEIEFSRWSTFNVSIYH--------------GPNRDMILEKLEACGVEVLITSFDSYRIHGSI-------------L 263 (875)
Q Consensus 211 l~qW~~E~~k~~~~~v~v~~--------------G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~-------------l 263 (875)
+.||.++|..+......... ................++++++++.+...... .
T Consensus 63 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 142 (184)
T PF04851_consen 63 LEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKL 142 (184)
T ss_dssp HHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHG
T ss_pred HHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhh
Confidence 99999999887663332211 11111122233345667999999988744221 2
Q ss_pred ccccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCC
Q 044036 264 SEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIM 306 (875)
Q Consensus 264 ~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPi 306 (875)
....+++||+||||++.+... ++.+......++|+|||||-
T Consensus 143 ~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 143 LKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 234689999999999865432 66666688999999999995
No 99
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.64 E-value=2.3e-15 Score=161.18 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecC----
Q 044036 517 KMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTR---- 592 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~---- 592 (875)
|+-.|..||+--. -..|.|||.+..+..-.|.-+|...|++.+.+.|.+|..-|.-+|++||.+- .-++|.|+
T Consensus 254 KflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~--YdivIAtD~s~~ 330 (569)
T KOG0346|consen 254 KFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL--YDIVIATDDSAD 330 (569)
T ss_pred hHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc--eeEEEEccCccc
Confidence 6666666665322 2458999999999999999999999999999999999999999999999863 33677776
Q ss_pred ----------------------C---------cccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEee
Q 044036 593 ----------------------A---------GGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLS 641 (875)
Q Consensus 593 ----------------------a---------gg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~ 641 (875)
+ .++|||++..+.||+||.|-++..|++|+||..|-|.+-.+ ..|+.
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta--lSfv~ 408 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA--LSFVS 408 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCce--EEEec
Confidence 1 14799999999999999999999999999999998877655 44554
Q ss_pred C
Q 044036 642 A 642 (875)
Q Consensus 642 ~ 642 (875)
.
T Consensus 409 P 409 (569)
T KOG0346|consen 409 P 409 (569)
T ss_pred c
Confidence 3
No 100
>PRK14701 reverse gyrase; Provisional
Probab=99.63 E-value=1.7e-14 Score=184.44 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEecchhH---HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEec----
Q 044036 519 RALEKLMYSWASKGDKILLFSYSVRM---LDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIST---- 591 (875)
Q Consensus 519 ~~L~~LL~~~~~~g~KVLIFs~~~~~---ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt---- 591 (875)
..|..+++.. +..+|||++.... ++.|...|...|+++..++|+ |.+.+++|.++... +||+|
T Consensus 320 ~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~--VLVaT~s~~ 389 (1638)
T PRK14701 320 EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID--YLIGVATYY 389 (1638)
T ss_pred HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC--EEEEecCCC
Confidence 4566777653 6789999998764 589999999999999999995 89999999997654 77777
Q ss_pred CCcccccCCCC-CCEEEEcCCCC---CchhHHHh-------------hhcccccCCcc
Q 044036 592 RAGGLGLNLVS-ANRVVIFDPNW---NPAQDLQA-------------QDRSFRFGQKR 632 (875)
Q Consensus 592 ~agg~GLNL~~-An~VI~~D~~W---Np~~~~Qa-------------igR~~RiGQ~k 632 (875)
+.+++|||++. ..+||+||+|- |...+.|. +||++|-|..-
T Consensus 390 gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~ 447 (1638)
T PRK14701 390 GTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPI 447 (1638)
T ss_pred CeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcc
Confidence 57899999998 99999999997 66655554 49999988753
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=7.8e-14 Score=165.94 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=107.5
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+.++.+.+...++.|..|||||.++...+.|..+|...|+++..|+|...+.+|+.+.+.|+.+. ++|+|+.+
T Consensus 427 ~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~----VtIATNmA 502 (896)
T PRK13104 427 ADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA----VTIATNMA 502 (896)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc----EEEeccCc
Confidence 36999999999999999999999999999999999999999999999999999999999999999862 89999999
Q ss_pred ccccCCCC--------------------------------------CCEEEEcCCCCCchhHHHhhhcccccCCcceEEE
Q 044036 595 GLGLNLVS--------------------------------------ANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIV 636 (875)
Q Consensus 595 g~GLNL~~--------------------------------------An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~V 636 (875)
|+|+|+.= .=+||.-+.+-|-..+.|..||++|.|..-....
T Consensus 503 GRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f 582 (896)
T PRK13104 503 GRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRF 582 (896)
T ss_pred cCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 99999762 2388999999999999999999999999865443
No 102
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=2e-13 Score=161.79 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=102.5
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
.|+.+|.+.+...+..|..|||||.++...+.|...|...|+++..++|.+...++.-+...++.+ . ++|+|+.+|
T Consensus 424 ~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g--~--VtIATnmAG 499 (796)
T PRK12906 424 SKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG--A--VTIATNMAG 499 (796)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc--e--EEEEecccc
Confidence 589999999988888999999999999999999999999999999999998866666666665543 2 899999999
Q ss_pred cccCCC---CCC-----EEEEcCCCCCchhHHHhhhcccccCCcceE
Q 044036 596 LGLNLV---SAN-----RVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634 (875)
Q Consensus 596 ~GLNL~---~An-----~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V 634 (875)
+|+|+. .+. +||.++.|-|...+.|++||++|.|..-..
T Consensus 500 RGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 500 RGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred CCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 999995 667 999999999999999999999999998665
No 103
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.61 E-value=1.3e-14 Score=159.84 Aligned_cols=310 Identities=20% Similarity=0.234 Sum_probs=210.0
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHH-HHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQT-IAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqa-iall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q 213 (875)
..|.|-|.-+|.- .+..|.+-++...+++|||+.+ +|=+..++ ...++.|.++|.-.+.|
T Consensus 215 ~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l----------------~~g~KmlfLvPLVALAN 275 (830)
T COG1202 215 EELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLL----------------SGGKKMLFLVPLVALAN 275 (830)
T ss_pred ceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHH----------------hCCCeEEEEehhHHhhc
Confidence 4789999999875 2334778889999999999974 33333332 24678999999766555
Q ss_pred H-HHHHH-HhcC--CcEEEEeCCChhHHHHHH----HhCCceEEEeeccccccc---ccccccccccEEEEcCCccccCc
Q 044036 214 W-EIEFS-RWST--FNVSIYHGPNRDMILEKL----EACGVEVLITSFDSYRIH---GSILSEVNWEIVIVDEAHRLKNE 282 (875)
Q Consensus 214 W-~~E~~-k~~~--~~v~v~~G~~r~~~~~~~----~~~~~~VvItTy~~l~~~---~~~l~~~~w~~VIiDEAH~ikn~ 282 (875)
. .++|. +|.+ +++.+--|..+-...+.. ...+.||++-||+-+--. ...+. +...|||||.|.+...
T Consensus 276 QKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDEiHtL~de 353 (830)
T COG1202 276 QKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDEIHTLEDE 353 (830)
T ss_pred chHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeeeeeeccch
Confidence 3 44555 4544 677777776554433221 123468999999866422 22232 4689999999999763
Q ss_pred --ccHHHHHHHhc----cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHH
Q 044036 283 --KSKLYMACLEL----KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIAD 356 (875)
Q Consensus 283 --~S~~~kal~~l----~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~ 356 (875)
...+--.+.+| .....|.||||- .|+.||..-|+. +++
T Consensus 354 ERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a-----------------~lV----------------- 397 (830)
T COG1202 354 ERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGA-----------------KLV----------------- 397 (830)
T ss_pred hcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCC-----------------eeE-----------------
Confidence 23333333333 346779999994 445554332220 000
Q ss_pred HHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhh
Q 044036 357 ERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKR 436 (875)
Q Consensus 357 ~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 436 (875)
...+-+-|...+++||.-..
T Consensus 398 ---------------------~y~~RPVplErHlvf~~~e~--------------------------------------- 417 (830)
T COG1202 398 ---------------------LYDERPVPLERHLVFARNES--------------------------------------- 417 (830)
T ss_pred ---------------------eecCCCCChhHeeeeecCch---------------------------------------
Confidence 11112234445556654222
Q ss_pred ccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCc
Q 044036 437 LDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCG 516 (875)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 516 (875)
.
T Consensus 418 -------------------------------------------------------------------------------e 418 (830)
T COG1202 418 -------------------------------------------------------------------------------E 418 (830)
T ss_pred -------------------------------------------------------------------------------H
Confidence 2
Q ss_pred hHHHHHHHHHHhh------cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 517 KMRALEKLMYSWA------SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 517 Kl~~L~~LL~~~~------~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
|+..+.+|.+.-. .-....|||+++.+-...|..+|..+|++..-+|+++++.+|..+-..|.+..-. .+++
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~--~VVT 496 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA--AVVT 496 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc--eEee
Confidence 4444444443221 1124689999999999999999999999999999999999999999999987554 7899
Q ss_pred cCCcccccCCCCCCEEEE----cCCCC-CchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 591 TRAGGLGLNLVSANRVVI----FDPNW-NPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 591 t~agg~GLNL~~An~VI~----~D~~W-Np~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
|.|.|-|+|+++ +.||| +...| +|..+.|..|||+|.|=...-.||-++-.|
T Consensus 497 TAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 497 TAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999986 56655 44455 999999999999999988777788887544
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.60 E-value=2.8e-13 Score=163.00 Aligned_cols=307 Identities=17% Similarity=0.214 Sum_probs=212.2
Q ss_pred hhhcccHHHHHHHHHHHHHhhCCC--CcEEecCCCCchHHHHH-HHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc
Q 044036 133 INCRLLEHQREGVKFLYKLYKNKH--GGILGDDMGLGKTIQTI-AFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS 209 (875)
Q Consensus 133 i~~~L~pyQ~~gv~~l~~~~~~~~--ggILaDemGLGKTiqai-all~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s 209 (875)
+...-.|-|..++.-..+-..+++ .-++|-|+|-|||=.|+ |...+. ...+-+-|+||+.
T Consensus 591 FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV-----------------~~GKQVAvLVPTT 653 (1139)
T COG1197 591 FPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV-----------------MDGKQVAVLVPTT 653 (1139)
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh-----------------cCCCeEEEEcccH
Confidence 344567789999998887666553 45889999999998887 222222 2457799999998
Q ss_pred hHHHH-HHHH-HHhcCC--cEEEEeCC----ChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccC
Q 044036 210 VIQNW-EIEF-SRWSTF--NVSIYHGP----NRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 210 Ll~qW-~~E~-~k~~~~--~v~v~~G~----~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn 281 (875)
++.+. -+-| .+|.++ +|.++.-- ....+++.++.+..||||-|+..+.++...- +-.+|||||=|++.=
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fk---dLGLlIIDEEqRFGV 730 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFK---DLGLLIIDEEQRFGV 730 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEe---cCCeEEEechhhcCc
Confidence 87553 3334 455554 44444332 3456788889999999999999998776532 348999999999844
Q ss_pred cccHHHHHHHhccc-cceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHH
Q 044036 282 EKSKLYMACLELKT-RNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQ 360 (875)
Q Consensus 282 ~~S~~~kal~~l~~-~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~ 360 (875)
+....++++++ -..|-||||||+..+.- +|. |
T Consensus 731 ---k~KEkLK~Lr~~VDvLTLSATPIPRTL~M--sm~------------------------G------------------ 763 (1139)
T COG1197 731 ---KHKEKLKELRANVDVLTLSATPIPRTLNM--SLS------------------------G------------------ 763 (1139)
T ss_pred ---cHHHHHHHHhccCcEEEeeCCCCcchHHH--HHh------------------------c------------------
Confidence 45566777754 57899999999765431 000 0
Q ss_pred HHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCC
Q 044036 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNL 440 (875)
Q Consensus 361 ~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (875)
+++ . .+|.. ||....-|.....+..
T Consensus 764 -iRd---------l--SvI~T--PP~~R~pV~T~V~~~d----------------------------------------- 788 (1139)
T COG1197 764 -IRD---------L--SVIAT--PPEDRLPVKTFVSEYD----------------------------------------- 788 (1139)
T ss_pred -chh---------h--hhccC--CCCCCcceEEEEecCC-----------------------------------------
Confidence 000 0 02221 2222111111111100
Q ss_pred CCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHH
Q 044036 441 DGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRA 520 (875)
Q Consensus 441 ~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~ 520 (875)
-..
T Consensus 789 -----------------------------------------------------------------------------~~~ 791 (1139)
T COG1197 789 -----------------------------------------------------------------------------DLL 791 (1139)
T ss_pred -----------------------------------------------------------------------------hHH
Confidence 001
Q ss_pred HHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCccccc
Q 044036 521 LEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRK--GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGL 598 (875)
Q Consensus 521 L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~--g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GL 598 (875)
+.+-|.+-..+|-+|-.-.+.+..+.-+...|... ..++.+.||.|+..+-++++.+|.++.-. +|+||.....||
T Consensus 792 ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d--VLv~TTIIEtGI 869 (1139)
T COG1197 792 IREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD--VLVCTTIIETGI 869 (1139)
T ss_pred HHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC--EEEEeeeeecCc
Confidence 22222222346777877788889999888888874 56788899999999999999999987544 888889999999
Q ss_pred CCCCCCEEEEcCCC-CCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 599 NLVSANRVVIFDPN-WNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 599 NL~~An~VI~~D~~-WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
|+++||++|+-+.+ +--+..-|-.||++|- .+..+.|-|+..
T Consensus 870 DIPnANTiIIe~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~ 912 (1139)
T COG1197 870 DIPNANTIIIERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPP 912 (1139)
T ss_pred CCCCCceEEEeccccccHHHHHHhccccCCc--cceEEEEEeecC
Confidence 99999999999887 7889999999999995 456778888875
No 105
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=9.9e-15 Score=155.10 Aligned_cols=121 Identities=24% Similarity=0.374 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCccc
Q 044036 517 KMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGL 596 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~ 596 (875)
|+..|..+.+ +-...+||++..+-++.|...|...|+..+.++|.+.+.+|..++..|+.+.+. +||+|...+.
T Consensus 252 k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr--vlIttdl~ar 325 (397)
T KOG0327|consen 252 KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR--VLITTDLLAR 325 (397)
T ss_pred cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce--EEeecccccc
Confidence 6677777776 345789999999999999999999999999999999999999999999998765 8999999999
Q ss_pred ccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 597 GLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 597 GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
|++++.++-||+||.|-|...|.+|+||++|.|-+-- +..++++.++
T Consensus 326 gidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~--~in~v~~~d~ 372 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV--AINFVTEEDV 372 (397)
T ss_pred ccchhhcceeeeeccccchhhhhhhcccccccCCCce--eeeeehHhhH
Confidence 9999999999999999999999999999999997643 3456665443
No 106
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.59 E-value=2.4e-15 Score=130.07 Aligned_cols=78 Identities=35% Similarity=0.630 Sum_probs=74.0
Q ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccC
Q 044036 550 KFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFG 629 (875)
Q Consensus 550 ~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiG 629 (875)
++|+..|+++..++|.++..+|+.+++.|+++... +||+|.++++|+|++.+++||++|++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~--vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR--VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS--EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce--EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 46888999999999999999999999999997664 8999999999999999999999999999999999999999987
No 107
>COG4889 Predicted helicase [General function prediction only]
Probab=99.58 E-value=1e-14 Score=166.22 Aligned_cols=161 Identities=22% Similarity=0.291 Sum_probs=109.6
Q ss_pred ccCCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEc
Q 044036 127 IQVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIIC 206 (875)
Q Consensus 127 ~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~ 206 (875)
..+|..-...|||||..++.-..+.|..+..|=|...+|+|||++++-+..++. ..++|.++
T Consensus 152 ~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala------------------~~~iL~Lv 213 (1518)
T COG4889 152 DNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA------------------AARILFLV 213 (1518)
T ss_pred cccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh------------------hhheEeec
Confidence 456666678999999999999999998888887888899999999999988773 36799999
Q ss_pred Cc-chHHHHHHHHHHhcC--CcEEEEeCC---------------------ChhHHHHHH----HhCCceEEEeecccccc
Q 044036 207 PS-SVIQNWEIEFSRWST--FNVSIYHGP---------------------NRDMILEKL----EACGVEVLITSFDSYRI 258 (875)
Q Consensus 207 P~-sLl~qW~~E~~k~~~--~~v~v~~G~---------------------~r~~~~~~~----~~~~~~VvItTy~~l~~ 258 (875)
|. +|+.|-.+|...-.. +.......+ ....++..+ +..+.-||.+||+.+-.
T Consensus 214 PSIsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~ 293 (1518)
T COG4889 214 PSISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPR 293 (1518)
T ss_pred chHHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHH
Confidence 96 788885554432221 222222111 112233333 23456799999998764
Q ss_pred ccc--ccccccccEEEEcCCccccCc------ccHHHHH--HHhccccceEEeecCC
Q 044036 259 HGS--ILSEVNWEIVIVDEAHRLKNE------KSKLYMA--CLELKTRNRIGLTGTI 305 (875)
Q Consensus 259 ~~~--~l~~~~w~~VIiDEAH~ikn~------~S~~~ka--l~~l~~~~rllLTGTP 305 (875)
... ...--.||+||+||||+-.+. .|..++. -..+++.+|+-|||||
T Consensus 294 i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 294 IKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred HHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 332 223347899999999996442 2222221 1335778899999999
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=7.7e-13 Score=157.47 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=105.9
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
.|+.++.+.+.+.+..|..|||||.++...+.|...|...|+++..++|. +.+|++.|..|..++.. ++|+|+.+|
T Consensus 414 ~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~--VtIATNmAG 489 (830)
T PRK12904 414 EKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA--VTIATNMAG 489 (830)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce--EEEeccccc
Confidence 59999999999988899999999999999999999999999999999995 78999999999987665 999999999
Q ss_pred cccCCCCC--------------------------------------CEEEEcCCCCCchhHHHhhhcccccCCcceEEE
Q 044036 596 LGLNLVSA--------------------------------------NRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIV 636 (875)
Q Consensus 596 ~GLNL~~A--------------------------------------n~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~V 636 (875)
+|+|+.-. =+||.-..+-|-..+.|..||++|.|..-....
T Consensus 490 RGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f 568 (830)
T PRK12904 490 RGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 568 (830)
T ss_pred CCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeE
Confidence 99997643 388999999999999999999999999866543
No 109
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.56 E-value=2.8e-14 Score=145.01 Aligned_cols=156 Identities=26% Similarity=0.303 Sum_probs=116.3
Q ss_pred hcccHHHHHHHHHHHHHhhCC-CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNK-HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVIQ 212 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~-~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl~ 212 (875)
..++|||.+++..++. . .++++..++|+|||..++.++...+... ...++||++| ..+..
T Consensus 7 ~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~--------------~~~~~l~~~p~~~~~~ 68 (201)
T smart00487 7 EPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRG--------------KGKRVLVLVPTRELAE 68 (201)
T ss_pred CCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhccc--------------CCCcEEEEeCCHHHHH
Confidence 4689999999998875 4 7889999999999998877777665321 2468999999 67889
Q ss_pred HHHHHHHHhcC----CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccc--cccccccEEEEcCCccccC-cc-c
Q 044036 213 NWEIEFSRWST----FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSI--LSEVNWEIVIVDEAHRLKN-EK-S 284 (875)
Q Consensus 213 qW~~E~~k~~~----~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~w~~VIiDEAH~ikn-~~-S 284 (875)
||..++..+++ ....++++.........+.....+|+++|++.+...... +....|+++|+||||.+.+ .. .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~ 148 (201)
T smart00487 69 QWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGD 148 (201)
T ss_pred HHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHH
Confidence 99999998875 345566666545555555555558999999988765443 4455788999999999985 33 3
Q ss_pred HHHHHHHhc-cccceEEeecCCCCC
Q 044036 285 KLYMACLEL-KTRNRIGLTGTIMQN 308 (875)
Q Consensus 285 ~~~kal~~l-~~~~rllLTGTPiqN 308 (875)
.....+..+ ...+++++||||..+
T Consensus 149 ~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 149 QLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HHHHHHHhCCccceEEEEecCCchh
Confidence 333444444 578889999999743
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=2.2e-12 Score=153.25 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=106.9
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
-.|+.++.+-+..+++.|..|||||.++...+.|..+|...|+++..+++..+..+|..+.+.|+.+. ++|+|+.+
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIATnmA 507 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIATNMA 507 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEecCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999864 89999999
Q ss_pred ccccCCCC-------------------------------------CCEEEEcCCCCCchhHHHhhhcccccCCcceEE
Q 044036 595 GLGLNLVS-------------------------------------ANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635 (875)
Q Consensus 595 g~GLNL~~-------------------------------------An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~ 635 (875)
|+|+|+.= .=+||.-..+-|-..+.|..||++|.|..-...
T Consensus 508 GRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 508 GRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 99999762 238999999999999999999999999875543
No 111
>PRK09694 helicase Cas3; Provisional
Probab=99.55 E-value=4.8e-13 Score=162.42 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=85.3
Q ss_pred HHHhhcCCCeEEEEecchhHHHHHHHHHHHcC---CcEEEEeCCCCHHHH----HHHHHHh-cCCCCc-eEEEEecCCcc
Q 044036 525 MYSWASKGDKILLFSYSVRMLDILEKFLIRKG---YSFSRLDGSTPSNLR----QSLVDDF-NSSPSK-QVFLISTRAGG 595 (875)
Q Consensus 525 L~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g---~~~~~ldG~~~~~eR----~~~i~~F-~~~~~~-~v~LiSt~agg 595 (875)
+.+....|.+||||++.+..+..+...|...+ +++..++|.++..+| .++++.| +++... ..+||+|++..
T Consensus 553 i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE 632 (878)
T PRK09694 553 MIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVE 632 (878)
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchh
Confidence 33334578999999999999999999998765 679999999999999 4678899 443221 35899999999
Q ss_pred cccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCc
Q 044036 596 LGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQK 631 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~ 631 (875)
.|||+ ++|.+|....| ...++||+||++|.|.+
T Consensus 633 ~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 633 QSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred heeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 99999 57988886655 56899999999999875
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.54 E-value=5.6e-12 Score=150.20 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=114.1
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
..+++..|.+.|..+...|.++|||+.....++.|..+|...|+++..++|.+++.+|.+++..|..+. ..+||+|..
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~--i~VLV~t~~ 501 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGE--FDVLVGINL 501 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCC--ceEEEEcCh
Confidence 457888999999999999999999999999999999999999999999999999999999999998764 348899999
Q ss_pred cccccCCCCCCEEEEcC-----CCCCchhHHHhhhcccccCCcceEEEEEEeeCCC--HHHHHHH
Q 044036 594 GGLGLNLVSANRVVIFD-----PNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGS--LEELVYT 651 (875)
Q Consensus 594 gg~GLNL~~An~VI~~D-----~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gT--iEE~I~~ 651 (875)
.++|+++..++.||++| .+-+...+.|++||++|.. .-.|+-|+...| +...|.+
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999999999 4568889999999999963 234566666554 4444444
No 113
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.52 E-value=7.3e-14 Score=133.53 Aligned_cols=136 Identities=22% Similarity=0.223 Sum_probs=102.8
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHHHHHHHHHhcC--CcEEEEeCC
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQNWEIEFSRWST--FNVSIYHGP 232 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~qW~~E~~k~~~--~~v~v~~G~ 232 (875)
+++++..++|+|||.+++.++..+... ...++++|+||... ..+|...+..+.. ..+.++++.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~--------------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS--------------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGG 66 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc--------------ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecC
Confidence 367899999999999999999887643 24678999999765 5666777888875 777788876
Q ss_pred ChhHHHHHHHhCCceEEEeecccccccccc--cccccccEEEEcCCccccCcccHHH---HHHHhccccceEEeecCC
Q 044036 233 NRDMILEKLEACGVEVLITSFDSYRIHGSI--LSEVNWEIVIVDEAHRLKNEKSKLY---MACLELKTRNRIGLTGTI 305 (875)
Q Consensus 233 ~r~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~w~~VIiDEAH~ikn~~S~~~---kal~~l~~~~rllLTGTP 305 (875)
..............+|+++||+.+...... +....|+++|+||+|.+.+...... .........+++++||||
T Consensus 67 ~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 67 TSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 655444444456778999999988654332 2344799999999999988765553 344455778899999998
No 114
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.52 E-value=1.1e-12 Score=162.66 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=88.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCc---EEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEE
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYS---FSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVV 607 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~---~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI 607 (875)
...++|||......++.+...|...+++ +..++|++++++|..+++.+ ...-+|+||++++.||++.+.++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SGRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CCeeEEEeccHHhhccccCcceEEE
Confidence 4568999999999999999999988765 56789999999999887653 2345899999999999999999999
Q ss_pred EcC---------------CCCCc---hhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 608 IFD---------------PNWNP---AQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 608 ~~D---------------~~WNp---~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
.++ .+-.| +.+.||.||++|. .+-.+|+|+++...
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 975 23233 5788999999997 46678999986544
No 115
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.51 E-value=2.3e-13 Score=145.36 Aligned_cols=315 Identities=18% Similarity=0.198 Sum_probs=212.4
Q ss_pred cHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHH---
Q 044036 138 LEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQN--- 213 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~q--- 213 (875)
.|.|+..+.-+++ +...+-..=+|.|||..-+.-+..-+..+ ....-+.||+.|+. |..|
T Consensus 45 tpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~------------s~~g~RalilsptreLa~qtlk 108 (529)
T KOG0337|consen 45 TPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSH------------SQTGLRALILSPTRELALQTLK 108 (529)
T ss_pred Cchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhc------------cccccceeeccCcHHHHHHHHH
Confidence 3448888876665 55556566789999998655544433221 12345789999975 5455
Q ss_pred HHHHHHHhcCCcEE-EEeCCChhHHHHHHHhCCceEEEeeccccccccc--ccccccccEEEEcCCccccCc--ccHHHH
Q 044036 214 WEIEFSRWSTFNVS-IYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS--ILSEVNWEIVIVDEAHRLKNE--KSKLYM 288 (875)
Q Consensus 214 W~~E~~k~~~~~v~-v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l~~~~w~~VIiDEAH~ikn~--~S~~~k 288 (875)
...++.+++.+... .++|+..+.....+.. +.||||.|...+.-..- .|.--...+||+|||.+|-.. .-+.++
T Consensus 109 vvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~-npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e 187 (529)
T KOG0337|consen 109 VVKDLGRGTKLRQSLLVGGDSIEEQFILLNE-NPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHE 187 (529)
T ss_pred HHHHhccccchhhhhhcccchHHHHHHHhcc-CCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHH
Confidence 45566666666665 6666666665555543 56899999987753221 122334578999999999553 456777
Q ss_pred HHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 044036 289 ACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLR 367 (875)
Q Consensus 289 al~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~ 367 (875)
.+.+++ .+..+++|||-- +. |++|...|
T Consensus 188 ~l~rl~~~~QTllfSatlp-~~------lv~fakaG-------------------------------------------- 216 (529)
T KOG0337|consen 188 ILSRLPESRQTLLFSATLP-RD------LVDFAKAG-------------------------------------------- 216 (529)
T ss_pred HHHhCCCcceEEEEeccCc-hh------hHHHHHcc--------------------------------------------
Confidence 788884 456799999941 11 11111111
Q ss_pred HHHHhhchhHHhhccCCCceeEE-EEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCC
Q 044036 368 KYLLRRTKEETIGHLMMGKEDNV-VFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSC 446 (875)
Q Consensus 368 ~~~lRR~k~~vi~~~lp~k~e~v-v~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (875)
+.||...++ |-...++.-+..+
T Consensus 217 --------------l~~p~lVRldvetkise~lk~~f------------------------------------------- 239 (529)
T KOG0337|consen 217 --------------LVPPVLVRLDVETKISELLKVRF------------------------------------------- 239 (529)
T ss_pred --------------CCCCceEEeehhhhcchhhhhhe-------------------------------------------
Confidence 111110000 0000000000000
Q ss_pred CccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHH
Q 044036 447 PFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMY 526 (875)
Q Consensus 447 ~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~ 526 (875)
.......|..+|..++.
T Consensus 240 ---------------------------------------------------------------~~~~~a~K~aaLl~il~ 256 (529)
T KOG0337|consen 240 ---------------------------------------------------------------FRVRKAEKEAALLSILG 256 (529)
T ss_pred ---------------------------------------------------------------eeeccHHHHHHHHHHHh
Confidence 00011136777777777
Q ss_pred HhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEE
Q 044036 527 SWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRV 606 (875)
Q Consensus 527 ~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~V 606 (875)
.... .++.+||+......+++...|...|+....+.|++.+..|..-+.+|+..... +|++|+++++|++++--+.|
T Consensus 257 ~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~--~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 257 GRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS--ILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred cccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc--eEEEehhhhccCCCcccccc
Confidence 6543 56899999999999999999999999999999999999999999999986554 99999999999999999999
Q ss_pred EEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 607 VIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 607 I~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
|+||.+-.+..+.+|+||+.|-|.+- ..|-||+...+
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~~~ 370 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVASTDD 370 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccc--eEEEEEecccc
Confidence 99999999999999999999988653 34777776543
No 116
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.50 E-value=1.2e-11 Score=129.41 Aligned_cols=307 Identities=18% Similarity=0.200 Sum_probs=202.0
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~ 212 (875)
..+|-|+|+.+-+-++..+.+....|+-.-+|.|||=+....+...+. ..+++.|..|. -++-
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~----------------~G~~vciASPRvDVcl 158 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN----------------QGGRVCIASPRVDVCL 158 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh----------------cCCeEEEecCcccchH
Confidence 468999999999999999999999999999999999888877777653 46789999994 4554
Q ss_pred HHHHHHHHhcC-CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCc-ccHHHHHH
Q 044036 213 NWEIEFSRWST-FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNE-KSKLYMAC 290 (875)
Q Consensus 213 qW~~E~~k~~~-~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~-~S~~~kal 290 (875)
.-..-++.-+. ..+..+||.+..... ..=||-||++.++... .||++||||.+-+--. +-.+..|+
T Consensus 159 El~~Rlk~aF~~~~I~~Lyg~S~~~fr------~plvVaTtHQLlrFk~------aFD~liIDEVDAFP~~~d~~L~~Av 226 (441)
T COG4098 159 ELYPRLKQAFSNCDIDLLYGDSDSYFR------APLVVATTHQLLRFKQ------AFDLLIIDEVDAFPFSDDQSLQYAV 226 (441)
T ss_pred HHHHHHHHhhccCCeeeEecCCchhcc------ccEEEEehHHHHHHHh------hccEEEEeccccccccCCHHHHHHH
Confidence 44445554444 889999998765532 1235556666665332 4799999999987322 23445555
Q ss_pred Hhc--cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 044036 291 LEL--KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRK 368 (875)
Q Consensus 291 ~~l--~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~ 368 (875)
+.- ....+|.|||||-. .+.... ..|.. ..
T Consensus 227 ~~ark~~g~~IylTATp~k----------------------~l~r~~----~~g~~----------------------~~ 258 (441)
T COG4098 227 KKARKKEGATIYLTATPTK----------------------KLERKI----LKGNL----------------------RI 258 (441)
T ss_pred HHhhcccCceEEEecCChH----------------------HHHHHh----hhCCe----------------------eE
Confidence 544 44577999999841 111100 00000 00
Q ss_pred HHH-hhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCC
Q 044036 369 YLL-RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCP 447 (875)
Q Consensus 369 ~~l-RR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (875)
..+ +| .-+..+| ....+|+.. .-+. +
T Consensus 259 ~klp~R----fH~~pLp--vPkf~w~~~--~~k~-----l---------------------------------------- 285 (441)
T COG4098 259 LKLPAR----FHGKPLP--VPKFVWIGN--WNKK-----L---------------------------------------- 285 (441)
T ss_pred eecchh----hcCCCCC--CCceEEecc--HHHH-----h----------------------------------------
Confidence 000 00 0001111 011122210 0000 0
Q ss_pred ccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHH-HHHHHHH
Q 044036 448 FCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMR-ALEKLMY 526 (875)
Q Consensus 448 ~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~-~L~~LL~ 526 (875)
.-+|+. .|...|+
T Consensus 286 ------------------------------------------------------------------~r~kl~~kl~~~le 299 (441)
T COG4098 286 ------------------------------------------------------------------QRNKLPLKLKRWLE 299 (441)
T ss_pred ------------------------------------------------------------------hhccCCHHHHHHHH
Confidence 001222 5777888
Q ss_pred HhhcCCCeEEEEecchhHHHHHHHHHHHcCCcE---EEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCC
Q 044036 527 SWASKGDKILLFSYSVRMLDILEKFLIRKGYSF---SRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSA 603 (875)
Q Consensus 527 ~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~---~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~A 603 (875)
+.+..|..++||...+.+++-+...|+. ++++ ..++.. ...|.+.|..|+++.- -+||+|....+|+++...
T Consensus 300 kq~~~~~P~liF~p~I~~~eq~a~~lk~-~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~--~lLiTTTILERGVTfp~v 374 (441)
T COG4098 300 KQRKTGRPVLIFFPEIETMEQVAAALKK-KLPKETIASVHSE--DQHRKEKVEAFRDGKI--TLLITTTILERGVTFPNV 374 (441)
T ss_pred HHHhcCCcEEEEecchHHHHHHHHHHHh-hCCccceeeeecc--CccHHHHHHHHHcCce--EEEEEeehhhcccccccc
Confidence 8888999999999999999999999954 3333 344444 3579999999998754 499999999999999999
Q ss_pred CEEEEcCCC--CCchhHHHhhhcccccCCcceEEEEEEe
Q 044036 604 NRVVIFDPN--WNPAQDLQAQDRSFRFGQKRHVIVFRLL 640 (875)
Q Consensus 604 n~VI~~D~~--WNp~~~~QaigR~~RiGQ~k~V~VyrLi 640 (875)
+..|+=.-+ ++-+...|.-||++|--..-+-.|+.|-
T Consensus 375 dV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 375 DVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred eEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 999886555 8999999999999995443333344443
No 117
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.47 E-value=2.4e-12 Score=160.17 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=89.5
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCC---cEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEE
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGY---SFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVV 607 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~---~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI 607 (875)
....+|||......++.+...|...++ .+..++|+++.++|+++++.+ + .+-+|+||+++..||++.+..+||
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~rkIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-GRRIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-CceEEEeccHHHhccccCCeeEEE
Confidence 346899999999999999999987654 578899999999999885544 2 245889999999999999999999
Q ss_pred EcCCC----C--------------CchhHHHhhhcccccCCcceEEEEEEeeCCCHH
Q 044036 608 IFDPN----W--------------NPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLE 646 (875)
Q Consensus 608 ~~D~~----W--------------Np~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiE 646 (875)
.++.. | +-+.+.||.||++|.| +-.+|||+++...+
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 98732 2 3357899999999987 66789999876544
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=2.8e-11 Score=144.47 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=104.6
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+.+|.+++...+..|..|||||+++...+.|...|...|+++..|++ .+.+|++.|..|...+.. ++|+|+.+
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~--VtIATNMA 656 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA--VTIATNMA 656 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe--EEEeccCc
Confidence 35999999999998889999999999999999999999999999999997 578999999999987665 99999999
Q ss_pred ccccCCCCCC--------EEEEcCCCCCchhHHHhhhcccccCCcceE
Q 044036 595 GLGLNLVSAN--------RVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634 (875)
Q Consensus 595 g~GLNL~~An--------~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V 634 (875)
|+|+|+.-.. +||.++.+-+...+.|++||++|.|..-..
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 9999999433 448899999999999999999999987654
No 119
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.45 E-value=2.2e-13 Score=118.10 Aligned_cols=81 Identities=30% Similarity=0.510 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhccc
Q 044036 547 ILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSF 626 (875)
Q Consensus 547 ~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~ 626 (875)
.|...|...++.+..++|.++..+|..+++.|+++.. .+|++|.++++|+|++.++.||+++++||+..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI--KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC--eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4677888889999999999999999999999998755 68999999999999999999999999999999999999999
Q ss_pred ccC
Q 044036 627 RFG 629 (875)
Q Consensus 627 RiG 629 (875)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 120
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.45 E-value=1.7e-12 Score=157.39 Aligned_cols=306 Identities=14% Similarity=0.134 Sum_probs=208.3
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
...||-|+++|+-.+. |..+++-..+|.||++.--.-+ ....+-+|||.|. +|+.-
T Consensus 263 ~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA-------------------~l~~gitvVISPL~SLm~D 319 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPA-------------------LLLGGVTVVISPLISLMQD 319 (941)
T ss_pred ccCChhHHHHHHHHHc----CCceEEEeecCCceeeEeeccc-------------------cccCCceEEeccHHHHHHH
Confidence 4689999999984444 8899999999999998642111 2234578999994 78766
Q ss_pred HHHHHHHhcCCcEEEEeCCChh----HHHHHHHhC--CceEEEeeccccccccccc---cc-c---cccEEEEcCCcccc
Q 044036 214 WEIEFSRWSTFNVSIYHGPNRD----MILEKLEAC--GVEVLITSFDSYRIHGSIL---SE-V---NWEIVIVDEAHRLK 280 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~~G~~r~----~~~~~~~~~--~~~VvItTy~~l~~~~~~l---~~-~---~w~~VIiDEAH~ik 280 (875)
....+.+ ..+....+++.... .+++.+..+ .++|+..|++.+......+ .. . -..++||||||.+.
T Consensus 320 Qv~~L~~-~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 320 QVTHLSK-KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred HHHhhhh-cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh
Confidence 6555522 23455555655433 677777777 7889999999887543322 11 1 25789999999875
Q ss_pred Cc-------ccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHH
Q 044036 281 NE-------KSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIR 353 (875)
Q Consensus 281 n~-------~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~ 353 (875)
.. .........++.....|+||||.-..=-+|+...|++-+|..+. ..|..
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~------~sfnR---------------- 456 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK------SSFNR---------------- 456 (941)
T ss_pred hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec------ccCCC----------------
Confidence 43 23333334444667889999997543333333333333322110 00000
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHH
Q 044036 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVEC 433 (875)
Q Consensus 354 ~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 433 (875)
|.....|.. ..+
T Consensus 457 ------------------------------~NL~yeV~~-k~~------------------------------------- 468 (941)
T KOG0351|consen 457 ------------------------------PNLKYEVSP-KTD------------------------------------- 468 (941)
T ss_pred ------------------------------CCceEEEEe-ccC-------------------------------------
Confidence 000000000 000
Q ss_pred HhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcc
Q 044036 434 CKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVK 513 (875)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (875)
T Consensus 469 -------------------------------------------------------------------------------- 468 (941)
T KOG0351|consen 469 -------------------------------------------------------------------------------- 468 (941)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
.-..-.+...++. ...+.-.||||.+..+++.+...|...|+....+|.+++..+|+.+-..|..+. ..+++.|=|
T Consensus 469 -~~~~~~~~~~~~~-~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~--~~VivATVA 544 (941)
T KOG0351|consen 469 -KDALLDILEESKL-RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDK--IRVIVATVA 544 (941)
T ss_pred -ccchHHHHHHhhh-cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCC--CeEEEEEee
Confidence 0001112222222 236778999999999999999999999999999999999999999999999875 347888889
Q ss_pred cccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEE
Q 044036 594 GGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFR 638 (875)
Q Consensus 594 gg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~Vyr 638 (875)
.|-|||-.+..-||.|..|-+-.-|-|-.|||+|-|+...+..|.
T Consensus 545 FGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 545 FGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred ccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEec
Confidence 999999999999999999999999999999999999998776543
No 121
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.45 E-value=9.1e-12 Score=146.16 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=98.7
Q ss_pred HhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchHHHHHHHH-HHhc--CCcE
Q 044036 151 LYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVIQNWEIEF-SRWS--TFNV 226 (875)
Q Consensus 151 ~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl~qW~~E~-~k~~--~~~v 226 (875)
.|+.+.++|++.++|+|||..|...+...+.++... .......-+++-|+| ++|...-.+-+ +++. ++.|
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~------~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v 195 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQ------GDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISV 195 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccc------cccccCCceEEEEechHHHHHHHHHHHhhhcccccceE
Confidence 356789999999999999999877776666542110 111234568999999 45544333222 2333 3788
Q ss_pred EEEeCCChhHHHHHHHhCCceEEEeecccccc----cc--cccccccccEEEEcCCccccCcccHH-----HHHHHhc--
Q 044036 227 SIYHGPNRDMILEKLEACGVEVLITSFDSYRI----HG--SILSEVNWEIVIVDEAHRLKNEKSKL-----YMACLEL-- 293 (875)
Q Consensus 227 ~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~----~~--~~l~~~~w~~VIiDEAH~ikn~~S~~-----~kal~~l-- 293 (875)
..++|+..-..-+ ....+|+|||++.+-- .. ..|. -...+|||||.|.+....... ++.++..
T Consensus 196 ~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~-~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 196 RELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALF-SLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred EEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhh-hheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 8899986443222 2346899999987641 11 1111 135799999999998865443 3333222
Q ss_pred --cccceEEeecCCCCCCHHHHHHHHhhhCCCCC
Q 044036 294 --KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSL 325 (875)
Q Consensus 294 --~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~ 325 (875)
..-+.++||||- -|+.|+ -.||..++.
T Consensus 272 sqs~IRivgLSATl--PN~eDv---A~fL~vn~~ 300 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATL--PNYEDV---ARFLRVNPY 300 (1230)
T ss_pred hhhheEEEEeeccC--CCHHHH---HHHhcCCCc
Confidence 344668999994 244543 445554433
No 122
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.44 E-value=8.2e-11 Score=141.27 Aligned_cols=126 Identities=18% Similarity=0.205 Sum_probs=110.7
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
..+++..|...|..+...|.++|||+.....++.|...|...|+++..++|.+++.+|..++..|..+. ..+||+|..
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~--i~vlV~t~~ 505 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVGINL 505 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC--ceEEEEeCH
Confidence 456888999999999999999999999999999999999999999999999999999999999998754 347899999
Q ss_pred cccccCCCCCCEEEEcCC-----CCCchhHHHhhhcccccCCcceEEEEEEeeCCC
Q 044036 594 GGLGLNLVSANRVVIFDP-----NWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGS 644 (875)
Q Consensus 594 gg~GLNL~~An~VI~~D~-----~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gT 644 (875)
.++|+++..++.||++|. +-++..+.|++||++|- . .-.++.|+...|
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~~ 558 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKIT 558 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCCC
Confidence 999999999999999996 45889999999999994 2 344666776443
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=3.5e-10 Score=131.74 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
.|+.++.+-+...++.|..|||.+.++..-+.|...|...|++...++.... ++-..+|.+=-. ..-+-|+|..+|
T Consensus 411 ~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG~---~gaVTIATNMAG 486 (764)
T PRK12326 411 EKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAGK---YGAVTVSTQMAG 486 (764)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcCC---CCcEEEEecCCC
Confidence 5899999999999999999999999999999999999999999999998744 333455655322 223888999999
Q ss_pred cccCCCC---------------CCEEEEcCCCCCchhHHHhhhcccccCCcceEEE
Q 044036 596 LGLNLVS---------------ANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIV 636 (875)
Q Consensus 596 ~GLNL~~---------------An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~V 636 (875)
+|-|+.- .=+||.-..+-|-..+.|..||++|.|..-....
T Consensus 487 RGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f 542 (764)
T PRK12326 487 RGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVF 542 (764)
T ss_pred CccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeE
Confidence 9988763 3389999999999999999999999999865443
No 124
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=9.2e-10 Score=131.40 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=96.3
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+.++.+-+...++.|..|||-+.++..-+.|...|...|+++..++.... +.-.++|.+=-. ..-+-|+|..+
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~AG~---~g~VTIATNmA 626 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGAGK---LGAVTVATNMA 626 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhcCC---CCcEEEeeccc
Confidence 36999999999999999999999999999999999999999999999988633 222345554222 22388999999
Q ss_pred ccccCCCCC--------CEEEEcCCCCCchhHHHhhhcccccCCcceEE
Q 044036 595 GLGLNLVSA--------NRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635 (875)
Q Consensus 595 g~GLNL~~A--------n~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~ 635 (875)
|+|-|+.-. =+||.-..+-|...+.|..||++|.|..-...
T Consensus 627 GRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~ 675 (970)
T PRK12899 627 GRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAK 675 (970)
T ss_pred cCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCcee
Confidence 999887633 38999999999999999999999999986543
No 125
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.33 E-value=1.4e-11 Score=126.92 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=106.5
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+++||.+++.-+.. +++.++..++|.|||+.++..+...+.... ....+++|||||. .++.||
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-----------~~~~~~viii~p~~~L~~q~ 85 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSP-----------KKDGPQALILAPTRELALQI 85 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhc-----------ccCCceEEEEcCCHHHHHHH
Confidence 478999999988776 788999999999999985554444332210 1245679999995 688999
Q ss_pred HHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc-cH-HH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK-SK-LY 287 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~-S~-~~ 287 (875)
...+..+.. .++..++|.............+.+|+|+|.+.+.... ..+.-.+++++|+||||.+.+.. .. ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~ 165 (203)
T cd00268 86 AEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIR 165 (203)
T ss_pred HHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHH
Confidence 998888853 6777788765443322333356789999987654321 11223457899999999986543 12 22
Q ss_pred HHHHhcc-ccceEEeecCCC
Q 044036 288 MACLELK-TRNRIGLTGTIM 306 (875)
Q Consensus 288 kal~~l~-~~~rllLTGTPi 306 (875)
..+..+. ....+++||||-
T Consensus 166 ~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 166 EILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred HHHHhCCcccEEEEEeccCC
Confidence 2334444 466799999986
No 126
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.32 E-value=8.8e-11 Score=142.95 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=102.1
Q ss_pred hcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcC--CCCceEEEEecCCcccccCCCCCCEE
Q 044036 529 ASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNS--SPSKQVFLISTRAGGLGLNLVSANRV 606 (875)
Q Consensus 529 ~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~--~~~~~v~LiSt~agg~GLNL~~An~V 606 (875)
..+|.||+|-++.+..+..+...|+..+.+++.+|+.+...+|.+.++.... ..+...++|+|++...|+|+. .+.+
T Consensus 437 ~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~m 515 (733)
T COG1203 437 VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVL 515 (733)
T ss_pred hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCee
Confidence 4578999999999999999999999988889999999999999998885542 112245899999999999998 4555
Q ss_pred EEcCCCCCchhHHHhhhcccccC--CcceEEEEEEeeCCCHHHHHHHHHHHHHHH
Q 044036 607 VIFDPNWNPAQDLQAQDRSFRFG--QKRHVIVFRLLSAGSLEELVYTRQVYKQQL 659 (875)
Q Consensus 607 I~~D~~WNp~~~~QaigR~~RiG--Q~k~V~VyrLi~~gTiEE~I~~rq~~K~~l 659 (875)
| -|+. -.....||.||++|-| ....++||...-.+....+.+.....+...
T Consensus 516 I-Te~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 568 (733)
T COG1203 516 I-TELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKS 568 (733)
T ss_pred e-ecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcc
Confidence 4 3331 3457889999999999 566788888888888888887776665543
No 127
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.31 E-value=1.3e-11 Score=123.11 Aligned_cols=155 Identities=20% Similarity=0.253 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHHHH
Q 044036 139 EHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWEIE 217 (875)
Q Consensus 139 pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~~E 217 (875)
|+|.+++.-+.. +...++..++|.|||..++..+...+.+. ....+||++|. .++.|-.++
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~--------------~~~~~lii~P~~~l~~q~~~~ 63 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG--------------KDARVLIIVPTRALAEQQFER 63 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT--------------SSSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC--------------CCceEEEEeeccccccccccc
Confidence 789999987763 67789999999999999886666544221 23489999995 688888889
Q ss_pred HHHhcC---CcEEEEeCCChhH-HHHHHHhCCceEEEeecccccccccc--cccccccEEEEcCCccccCc--ccHHHHH
Q 044036 218 FSRWST---FNVSIYHGPNRDM-ILEKLEACGVEVLITSFDSYRIHGSI--LSEVNWEIVIVDEAHRLKNE--KSKLYMA 289 (875)
Q Consensus 218 ~~k~~~---~~v~v~~G~~r~~-~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~w~~VIiDEAH~ikn~--~S~~~ka 289 (875)
+..++. .++..++|..... .......++.+|+|+|++.+...... +.....++||+||+|.+... .......
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i 143 (169)
T PF00270_consen 64 LRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSI 143 (169)
T ss_dssp HHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHH
Confidence 988876 5788888876432 22233356789999999988754332 22234799999999999763 2233334
Q ss_pred HHhc---cccceEEeecCCCCCCHHH
Q 044036 290 CLEL---KTRNRIGLTGTIMQNKIME 312 (875)
Q Consensus 290 l~~l---~~~~rllLTGTPiqN~~~E 312 (875)
+..+ ...+.+++||||- .+++.
T Consensus 144 ~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 144 LRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp HHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred HHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 4444 3466899999996 44443
No 128
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.24 E-value=1.1e-08 Score=113.39 Aligned_cols=137 Identities=17% Similarity=0.217 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCccc
Q 044036 517 KMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGL 596 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~ 596 (875)
-+.-|..-++.-.+.+++|||-+-..+|.+-|..+|...|+++.++|.....-+|.++|.+.+.+.- -+|+-..-.-+
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~--DvLVGINLLRE 508 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF--DVLVGINLLRE 508 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCc--cEEEeehhhhc
Confidence 3444444444545688999999999999999999999999999999999999999999999998654 38888999999
Q ss_pred ccCCCCCCEEEEcCCC-----CCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHH
Q 044036 597 GLNLVSANRVVIFDPN-----WNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYK 656 (875)
Q Consensus 597 GLNL~~An~VI~~D~~-----WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K 656 (875)
||||+.++-|.|+|.+ -+-...+|-||||.|--. -.|..|-=...+++++.|-+...++
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHHHHHHHHHHHH
Confidence 9999999999999988 478899999999999432 3344444444456666666654443
No 129
>PF14773 VIGSSK: Helicase-associated putative binding domain, C-terminal
Probab=99.20 E-value=4e-12 Score=99.21 Aligned_cols=32 Identities=22% Similarity=0.520 Sum_probs=30.0
Q ss_pred cchhhhhccceeeEeeccccccCCccc---chhhh
Q 044036 760 TSKPLLEDMGIVYAHRNDDIVNKQPGF---QRKKE 791 (875)
Q Consensus 760 ~~~~~~~~~gv~y~h~n~~vi~~~~~~---~~~~~ 791 (875)
.++.||..+||+|||+|++|||+||+| |||||
T Consensus 27 ~I~aiL~~~gV~YtH~N~eVIGsSk~E~~lSR~Ae 61 (61)
T PF14773_consen 27 PIQAILASAGVEYTHSNQEVIGSSKAEEQLSRRAE 61 (61)
T ss_pred HHHHHHhhcceeeeecCcceeccHHHHHHHHhhcC
Confidence 677899999999999999999999998 99986
No 130
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.18 E-value=1e-09 Score=130.74 Aligned_cols=162 Identities=18% Similarity=0.219 Sum_probs=96.2
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchHHHHHHHHHHhcC---CcEEEE
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVIQNWEIEFSRWST---FNVSIY 229 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl~qW~~E~~k~~~---~~v~v~ 229 (875)
...+.+|+.++|.|||-.|+.-+..-++.+-..+.. ......++.-|+| ..|++.|...|.+|.. ..|.-.
T Consensus 324 ~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs-----~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~El 398 (1674)
T KOG0951|consen 324 GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGS-----VNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLEL 398 (1674)
T ss_pred CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccc-----eecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEe
Confidence 345678899999999998776555444332211100 1123457889999 7899999999999864 455666
Q ss_pred eCCChhHHHHHHHhCCceEEEeeccccc----ccccccccccccEEEEcCCccccCc-c----cHHHHHHHhc----ccc
Q 044036 230 HGPNRDMILEKLEACGVEVLITSFDSYR----IHGSILSEVNWEIVIVDEAHRLKNE-K----SKLYMACLEL----KTR 296 (875)
Q Consensus 230 ~G~~r~~~~~~~~~~~~~VvItTy~~l~----~~~~~l~~~~w~~VIiDEAH~ikn~-~----S~~~kal~~l----~~~ 296 (875)
+|+..-.. ..+ .+-.|+++|.+.+- +..+.-..--++++|+||.|.+... . |-..+..++. ...
T Consensus 399 TgD~~l~~-~qi--eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~ 475 (1674)
T KOG0951|consen 399 TGDSQLGK-EQI--EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGS 475 (1674)
T ss_pred cccccchh-hhh--hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCc
Confidence 77643221 111 23469999988762 1111111113578999999999332 2 2233333333 233
Q ss_pred ceEEeecCCCCCCHHHHHHHHhhhCCCCC
Q 044036 297 NRIGLTGTIMQNKIMELYNLFDWVAPGSL 325 (875)
Q Consensus 297 ~rllLTGTPiqN~~~El~~Ll~~l~p~~~ 325 (875)
+-++||||- -|+.|.-+.|..-.+|.|
T Consensus 476 RlVGLSATL--PNy~DV~~Fl~v~~~glf 502 (1674)
T KOG0951|consen 476 RLVGLSATL--PNYEDVASFLRVDPEGLF 502 (1674)
T ss_pred eeeeecccC--CchhhhHHHhccCccccc
Confidence 458999995 356666554433334443
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=4.7e-09 Score=125.38 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=96.5
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+.++.+-+..+++.|..|||-+.++..-+.|..+|...|+++..++.... +.-.++|.+ .+ ...-+-|+|..+
T Consensus 432 ~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~--AG-~~GaVTIATNMA 507 (913)
T PRK13103 432 EEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ--AG-RPGALTIATNMA 507 (913)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc--CC-CCCcEEEeccCC
Confidence 46999999999999999999999999999999999999999999988877633 233345553 22 122378899999
Q ss_pred ccccCCC-------------------------------------CCCEEEEcCCCCCchhHHHhhhcccccCCcceEEE
Q 044036 595 GLGLNLV-------------------------------------SANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIV 636 (875)
Q Consensus 595 g~GLNL~-------------------------------------~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~V 636 (875)
|+|-|+. +.=+||.-..+-|-..+.|..||++|.|..-....
T Consensus 508 GRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 508 GRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 9998875 23389999999999999999999999999865443
No 132
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.15 E-value=3e-09 Score=114.21 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=94.6
Q ss_pred EEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCC
Q 044036 535 ILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWN 614 (875)
Q Consensus 535 VLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WN 614 (875)
-||||......+.+.-.|...|++..-++.+....+|-.+-++|.++..+ +++.|-..|.|++=.+..-||.+|++-|
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P--vI~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP--VIAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC--EEEEEeccccccCCcceeEEEecCchhh
Confidence 49999999999999999999999999999999999999999999987665 8888999999999999999999999999
Q ss_pred chhHHHhhhcccccCCcceEEEEE
Q 044036 615 PAQDLQAQDRSFRFGQKRHVIVFR 638 (875)
Q Consensus 615 p~~~~QaigR~~RiGQ~k~V~Vyr 638 (875)
-+-|-|--||++|-|-..-+..|+
T Consensus 336 ~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hHHHHHhccccccCCCccceeeee
Confidence 999999999999999877676654
No 133
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=4.9e-08 Score=115.64 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=97.8
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHH-HHHHHhcCCCCceEEEEecCC
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQ-SLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~-~~i~~F~~~~~~~v~LiSt~a 593 (875)
..|+.++.+-+...++.|..|||.+.++...+.|..+|...|++...++...- +++ .+|. +.+ ...-+-|+|..
T Consensus 409 ~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa--~AG-~~GaVTIATNM 483 (925)
T PRK12903 409 HAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA--KAG-QKGAITIATNM 483 (925)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH--hCC-CCCeEEEeccc
Confidence 46999999999998999999999999999999999999999999999998633 344 3444 333 22348899999
Q ss_pred cccccCCCCCC--------EEEEcCCCCCchhHHHhhhcccccCCcceEEE
Q 044036 594 GGLGLNLVSAN--------RVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIV 636 (875)
Q Consensus 594 gg~GLNL~~An--------~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~V 636 (875)
+|+|-|+.-.. +||..+.+-|-..+.|..||++|.|..-....
T Consensus 484 AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 484 AGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 99999987544 99999999999999999999999998865443
No 134
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.08 E-value=1.8e-08 Score=125.44 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=59.0
Q ss_pred CCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCC--
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIR----KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSAN-- 604 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An-- 604 (875)
.+.++|||..+..+++.+...|.. .++. .+..+.. ..|.+++++|+.++.. +|+.|...++|+|+.+..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~--iLlgt~sf~EGVD~~g~~l~ 747 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKA--ILLGTSSFWEGVDFPGNGLV 747 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCe--EEEEcceeecccccCCCceE
Confidence 556899999999999999999875 3444 3333333 5789999999986543 777889999999999854
Q ss_pred EEEEcCCCC
Q 044036 605 RVVIFDPNW 613 (875)
Q Consensus 605 ~VI~~D~~W 613 (875)
.||+.-.|+
T Consensus 748 ~viI~~LPf 756 (850)
T TIGR01407 748 CLVIPRLPF 756 (850)
T ss_pred EEEEeCCCC
Confidence 667766554
No 135
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.02 E-value=6.5e-09 Score=104.78 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhCCCCcEEecCCCCchHHH-HHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHHHHH
Q 044036 141 QREGVKFLYKLYKNKHGGILGDDMGLGKTIQ-TIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWEIEF 218 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~ggILaDemGLGKTiq-aiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~~E~ 218 (875)
|.+.+...+- |-..+--.-.|+|||.. +++-+..+- .....-.+||+|-+ .|..|..+|.
T Consensus 69 qhecipqail----gmdvlcqaksgmgktavfvl~tlqqie--------------pv~g~vsvlvmchtrelafqi~~ey 130 (387)
T KOG0329|consen 69 QHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIE--------------PVDGQVSVLVMCHTRELAFQISKEY 130 (387)
T ss_pred hhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcC--------------CCCCeEEEEEEeccHHHHHHHHHHH
Confidence 6666654433 44455556679999976 344443331 12223458999986 5677888887
Q ss_pred HHh---cC-CcEEEEeCCChhHHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCccc
Q 044036 219 SRW---ST-FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHRL 279 (875)
Q Consensus 219 ~k~---~~-~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~i 279 (875)
.+| .| .++.++.|.-....-+.....-.+||+.|+..+... ...|+--+..-.|+|||..+
T Consensus 131 ~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 131 ERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred HHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 666 45 788888887433222223333678999999876532 23344445677899999876
No 136
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.01 E-value=3.5e-09 Score=114.29 Aligned_cols=228 Identities=20% Similarity=0.209 Sum_probs=126.0
Q ss_pred eeEEEEecCCHHHHHHHHHHhcchhH--HHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhcc
Q 044036 387 EDNVVFCTMSDLQKRAYRRLLQLPEI--QCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNH 464 (875)
Q Consensus 387 ~e~vv~~~lt~~q~~~Y~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh 464 (875)
.++.+..+|+..|+++|+.++..... ......... ...... . ........+-.++..++.+|+|
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~------~~~i~~---~-----~~~~~~~~~~~~~~nl~~V~~H 69 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDS------SESIDS---L-----LDESLVQSMELLIENLRLVANH 69 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--------HHHH---------------HHHHHHHHHHHHHHH-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCc------cccccc---h-----hhhhhHHHHHHHHHHHHHhccC
Confidence 35678899999999999998874322 111111100 000000 0 0001223456778899999999
Q ss_pred ccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHh-----hcCCCeEEEEe
Q 044036 465 LELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSW-----ASKGDKILLFS 539 (875)
Q Consensus 465 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~-----~~~g~KVLIFs 539 (875)
|+|+..+.....-...+..+. ....|||+.+|..||..+ ...+-+++|.+
T Consensus 70 P~LlvdH~mPk~ll~~e~~~~-------------------------~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~ 124 (297)
T PF11496_consen 70 PSLLVDHYMPKQLLLSEPAEW-------------------------LAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVS 124 (297)
T ss_dssp GGGT--TT--S-S-STTHHHH-------------------------HHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE
T ss_pred ccccccccCccccccchHHHH-------------------------HHHcCchHHHHHHHHHHHHhhhcccCCceEEEEe
Confidence 999865542211111111111 135689999999999999 66778999999
Q ss_pred cchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH------------HHhc--CCCCceEEEEecCCccc----ccCCC
Q 044036 540 YSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLV------------DDFN--SSPSKQVFLISTRAGGL----GLNLV 601 (875)
Q Consensus 540 ~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i------------~~F~--~~~~~~v~LiSt~agg~----GLNL~ 601 (875)
+..+++|+|+.+|..+++.|.|++|..-..+....- .... ...+..++|++++-... .++-.
T Consensus 125 ~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~ 204 (297)
T PF11496_consen 125 RSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNY 204 (297)
T ss_dssp -STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TTTS--TT-S
T ss_pred cCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccC
Confidence 999999999999999999999999986554443322 0111 11234567887765544 24445
Q ss_pred CCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHH
Q 044036 602 SANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQV 654 (875)
Q Consensus 602 ~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~ 654 (875)
..|.||-||+.+++....-..-|...-.+ +.+-|+||+..+|+|-.+.....
T Consensus 205 ~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 205 NFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp -EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTT
T ss_pred CcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccC
Confidence 67899999999999876554444433222 78999999999999987776544
No 137
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.01 E-value=1.7e-08 Score=106.67 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=93.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcC
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFD 610 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D 610 (875)
.|..-||||-+..-.+-+...|+..|+....++..+.+++|..+-..|-.+.- . +++.|-|.|.||+-+....||.-.
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~ei-q-vivatvafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEI-Q-VIVATVAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccce-E-EEEEEeeecccCCCCCeeEEEecc
Confidence 46778999999999999999999999999999999999998888888877643 3 677788999999999999999999
Q ss_pred CCCCchhHHH-------------------------------------------hhhcccccCCcceEEEEEE
Q 044036 611 PNWNPAQDLQ-------------------------------------------AQDRSFRFGQKRHVIVFRL 639 (875)
Q Consensus 611 ~~WNp~~~~Q-------------------------------------------aigR~~RiGQ~k~V~VyrL 639 (875)
.+-+...|-| --||++|-|++-++..|+=
T Consensus 394 l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 394 LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEec
Confidence 9999999999 4689999999998876653
No 138
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.00 E-value=2.3e-09 Score=113.52 Aligned_cols=234 Identities=20% Similarity=0.233 Sum_probs=140.0
Q ss_pred cCCchh--hhcccHHHHHHHHHHHHHhh------CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCC
Q 044036 128 QVPASI--NCRLLEHQREGVKFLYKLYK------NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKK 199 (875)
Q Consensus 128 ~vP~~i--~~~L~pyQ~~gv~~l~~~~~------~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~ 199 (875)
.+|..+ ...|-.-|+|+|-+..+... .+.|-+|+|.+|.||-.|+.+++...+.++ +.
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--------------r~ 92 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--------------RK 92 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--------------CC
Confidence 355532 45788999999999987775 357889999999999999999888765322 23
Q ss_pred CcEEEEcCcchHHHHHHHHHHhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc-------ccccc-ccc-
Q 044036 200 GYVLIICPSSVIQNWEIEFSRWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG-------SILSE-VNW- 268 (875)
Q Consensus 200 ~~~LIV~P~sLl~qW~~E~~k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~-------~~l~~-~~w- 268 (875)
+++-|-+...|..--.+.+..-+. ..+..+..-..... ..-..+|+.+||.++.... ..|.. ++|
T Consensus 93 r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~----~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~ 168 (303)
T PF13872_consen 93 RAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDI----IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWC 168 (303)
T ss_pred ceEEEECChhhhhHHHHHHHHhCCCcccceechhhccCcC----CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHH
Confidence 334444446777766666665544 22222222111110 1123469999999987542 12221 133
Q ss_pred -----cEEEEcCCccccCccc------HHHHHHHhc----cccceEEeecCCCCCCHHHHHHHHhhhCCCCC------CC
Q 044036 269 -----EIVIVDEAHRLKNEKS------KLYMACLEL----KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSL------GT 327 (875)
Q Consensus 269 -----~~VIiDEAH~ikn~~S------~~~kal~~l----~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~------~~ 327 (875)
.+||+||||+.||..+ +...++..| ..-+.+-.|||...+ .-+|.-..+-+.+ .+
T Consensus 169 g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase----p~NmaYm~RLGLWG~gtpf~~ 244 (303)
T PF13872_consen 169 GEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE----PRNMAYMSRLGLWGPGTPFPD 244 (303)
T ss_pred hcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC----CceeeeeeeccccCCCCCCCC
Confidence 4899999999999755 566666555 444678999998632 2223222333444 44
Q ss_pred HHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHH--HHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHH
Q 044036 328 REHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA--VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRR 405 (875)
Q Consensus 328 ~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~--~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~ 405 (875)
..+|...+.. +.. . ..+-+.. .....+++|... ....+..++-++|++.|.++|+.
T Consensus 245 ~~~f~~a~~~----gGv-~-----------amE~vA~dlKa~G~yiaR~LS------f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 245 FDDFLEAMEK----GGV-G-----------AMEMVAMDLKARGMYIARQLS------FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HHHHHHHHHh----cCc-h-----------HHHHHHHHHHhcchheeeecc------cCCceEEEEEecCCHHHHHHhcC
Confidence 4555444322 211 0 0111111 122344555544 33556778899999999999975
No 139
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.98 E-value=3e-08 Score=115.97 Aligned_cols=141 Identities=20% Similarity=0.228 Sum_probs=91.2
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH-
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN- 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q- 213 (875)
..|=.+|+++|..|.. +..+++|..+-.|||+.|=..++..- ...-+++--.|--.+.|
T Consensus 296 FelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAialaq----------------~h~TR~iYTSPIKALSNQ 355 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALAQ----------------KHMTRTIYTSPIKALSNQ 355 (1248)
T ss_pred CCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHHH----------------hhccceEecchhhhhccc
Confidence 5778899999986655 88899999999999999765554331 12445788888555554
Q ss_pred HHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccc----ccccccccccEEEEcCCccccCccc-HHHH
Q 044036 214 WEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIH----GSILSEVNWEIVIVDEAHRLKNEKS-KLYM 288 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~----~~~l~~~~w~~VIiDEAH~ikn~~S-~~~k 288 (875)
=-++|+.-++ .+.+++|+..-. ....++|+|-+.+++. .+.+..+ ..||+||.|++.+..- -.|.
T Consensus 356 KfRDFk~tF~-DvgLlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDv--E~VIFDEVHYiND~eRGvVWE 425 (1248)
T KOG0947|consen 356 KFRDFKETFG-DVGLLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDV--EFVIFDEVHYINDVERGVVWE 425 (1248)
T ss_pred hHHHHHHhcc-ccceeecceeeC-------CCcceEeehHHHHHHHHhcccchhhcc--ceEEEeeeeecccccccccce
Confidence 4455654333 334777763211 1235899999888743 3445544 5599999999976432 2333
Q ss_pred HHHh-ccc-cceEEeecCC
Q 044036 289 ACLE-LKT-RNRIGLTGTI 305 (875)
Q Consensus 289 al~~-l~~-~~rllLTGTP 305 (875)
-+-- +.. -..|+||||-
T Consensus 426 EViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 426 EVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred eeeeeccccceEEEEeccC
Confidence 3322 332 2448999993
No 140
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.95 E-value=5.6e-09 Score=112.10 Aligned_cols=96 Identities=23% Similarity=0.299 Sum_probs=87.6
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEE
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKG---YSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVV 607 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g---~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI 607 (875)
.-+|.||||....-.|-|+++|..+| |.++.++|...+.+|.+.++.|...+- -|||+|+++++||++++.-.+|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dv--kflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDV--KFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCe--EEEEEehhhhccccccCCceEE
Confidence 46799999999999999999999864 678899999999999999999987543 3999999999999999999999
Q ss_pred EcCCCCCchhHHHhhhccccc
Q 044036 608 IFDPNWNPAQDLQAQDRSFRF 628 (875)
Q Consensus 608 ~~D~~WNp~~~~QaigR~~Ri 628 (875)
++..|-.-..|.+||||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999998884
No 141
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.92 E-value=7.5e-08 Score=114.05 Aligned_cols=124 Identities=23% Similarity=0.376 Sum_probs=93.8
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++..|+--++. ........|+| ++|+|||.-.+.....+. ...++++||.|+ .|+.|-
T Consensus 82 ~~ws~QR~WakR---~~rg~SFaiiA-PTGvGKTTfg~~~sl~~a----------------~kgkr~yii~PT~~Lv~Q~ 141 (1187)
T COG1110 82 RPWSAQRVWAKR---LVRGKSFAIIA-PTGVGKTTFGLLMSLYLA----------------KKGKRVYIIVPTTTLVRQV 141 (1187)
T ss_pred CchHHHHHHHHH---HHcCCceEEEc-CCCCchhHHHHHHHHHHH----------------hcCCeEEEEecCHHHHHHH
Confidence 455668754443 44445566666 899999976555544442 235789999996 567888
Q ss_pred HHHHHHhcC----CcE-EEEeCC----ChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccc
Q 044036 215 EIEFSRWST----FNV-SIYHGP----NRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRL 279 (875)
Q Consensus 215 ~~E~~k~~~----~~v-~v~~G~----~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~i 279 (875)
.+-+.++.. +++ .+||+. .++...+.+..++|+|+|||-..+.++.+.|...+||+|++|.++-+
T Consensus 142 ~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 142 YERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 888888863 333 339987 45677888999999999999999999999999999999999999876
No 142
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.84 E-value=1.4e-06 Score=104.26 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCC-HHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTP-SNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~-~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
.|+.++.+-+...++.|..|||-+.++..-+.|...|...|+++..++.... .+.=.++|.+= + ...-+-|+|..+
T Consensus 408 ~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G-~~G~VTIATNMA 484 (870)
T CHL00122 408 SKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--G-RKGSITIATNMA 484 (870)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--C-CCCcEEEecccc
Confidence 5899888888888999999999999999999999999999999999998743 23444566652 2 223388899999
Q ss_pred ccccCC
Q 044036 595 GLGLNL 600 (875)
Q Consensus 595 g~GLNL 600 (875)
|+|-|+
T Consensus 485 GRGTDI 490 (870)
T CHL00122 485 GRGTDI 490 (870)
T ss_pred CCCcCe
Confidence 999664
No 143
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.79 E-value=9.4e-07 Score=107.29 Aligned_cols=91 Identities=9% Similarity=-0.043 Sum_probs=57.9
Q ss_pred eEEEeecccccccc--cccccccccEEEEcCCccccCcccHHH--HHHHhc-cccceEEeecCCCC--CCHHHHHHHHhh
Q 044036 247 EVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEKSKLY--MACLEL-KTRNRIGLTGTIMQ--NKIMELYNLFDW 319 (875)
Q Consensus 247 ~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~S~~~--kal~~l-~~~~rllLTGTPiq--N~~~El~~Ll~~ 319 (875)
.|+++|...+..+. ..+..-....+|+||||++.+..+..+ +..+.- +.....++|+.|-. ..+.-+-.++.-
T Consensus 9 gi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk~ 88 (814)
T TIGR00596 9 GIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMRN 88 (814)
T ss_pred CEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHHH
Confidence 58888888887653 334444678999999999976544332 222222 45678999999976 355666777776
Q ss_pred hCCCCCCCHHHHHHHhcc
Q 044036 320 VAPGSLGTREHFREFYDE 337 (875)
Q Consensus 320 l~p~~~~~~~~F~~~~~~ 337 (875)
|.....--+..|...+..
T Consensus 89 L~i~~v~l~prf~~~V~~ 106 (814)
T TIGR00596 89 LFLRHVYLWPRFHVEVAS 106 (814)
T ss_pred hCcCeEEEeCCCchHHHH
Confidence 665554444444444333
No 144
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.74 E-value=2.9e-06 Score=102.32 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=96.8
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+.++.+-+..+++.|..|||-+.++..-+.|..+|...|+++..|+...-. .=.++|.+=-. + -.+-|+|..+
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~-~EAeIVA~AG~-~--GaVTIATNMA 686 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQ-KEAEIVAEAGQ-P--GTVTIATNMA 686 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchh-hHHHHHHhcCC-C--CcEEEeccCc
Confidence 469999999999999999999999999999999999999999999888776432 22345544222 2 2378899999
Q ss_pred ccccCCC--------CCCEEEEcCCCCCchhHHHhhhcccccCCcceEE
Q 044036 595 GLGLNLV--------SANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVI 635 (875)
Q Consensus 595 g~GLNL~--------~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~ 635 (875)
|+|-|+. +.=+||.-..+-+...+.|..||++|.|..-...
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~ 735 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQ 735 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcce
Confidence 9999987 4568999999999999999999999999876543
No 145
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.70 E-value=1e-06 Score=104.83 Aligned_cols=152 Identities=20% Similarity=0.215 Sum_probs=108.5
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl~ 212 (875)
...|-+-|..++.-+........-.+|.-.+|+|||=.-+.++...+.+ .+-+||++| -+|..
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~----------------GkqvLvLVPEI~Ltp 259 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ----------------GKQVLVLVPEIALTP 259 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc----------------CCEEEEEeccccchH
Confidence 3478889999999998865334566889999999999988888887643 456999999 58899
Q ss_pred HHHHHHHHhcCCcEEEEeCC----ChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccc--cCcccHH
Q 044036 213 NWEIEFSRWSTFNVSIYHGP----NRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRL--KNEKSKL 286 (875)
Q Consensus 213 qW~~E~~k~~~~~v~v~~G~----~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~i--kn~~S~~ 286 (875)
|-...|+..++.++.++|.. .+.....+...+...|||-|...+-.- + -+-.+||+||=|-- |-.+..+
T Consensus 260 q~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P---f--~~LGLIIvDEEHD~sYKq~~~pr 334 (730)
T COG1198 260 QLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLP---F--KNLGLIIVDEEHDSSYKQEDGPR 334 (730)
T ss_pred HHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCc---h--hhccEEEEeccccccccCCcCCC
Confidence 98888888888899999875 233444555667888999988765321 1 24479999999974 4333322
Q ss_pred H----HHHH--hccccceEEeecCCC
Q 044036 287 Y----MACL--ELKTRNRIGLTGTIM 306 (875)
Q Consensus 287 ~----kal~--~l~~~~rllLTGTPi 306 (875)
+ -|+. ....-..++=||||-
T Consensus 335 YhARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 335 YHARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred cCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 2 2221 223445577799993
No 146
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.68 E-value=6.5e-07 Score=108.93 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=106.6
Q ss_pred hhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchH
Q 044036 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVI 211 (875)
Q Consensus 133 i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl 211 (875)
....|-|+|++++.-+- .+.+++++..+|.|||+.+-.++...+. ...++.-..| +.|.
T Consensus 116 ~~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~----------------~~qrviYTsPIKALs 175 (1041)
T COG4581 116 YPFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALR----------------DGQRVIYTSPIKALS 175 (1041)
T ss_pred CCCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHH----------------cCCceEeccchhhhh
Confidence 46789999999998554 4899999999999999998887776542 2445899999 5666
Q ss_pred HHHHHHHH-HhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeeccccccc----ccccccccccEEEEcCCccccCccc
Q 044036 212 QNWEIEFS-RWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIH----GSILSEVNWEIVIVDEAHRLKNEKS 284 (875)
Q Consensus 212 ~qW~~E~~-k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~----~~~l~~~~w~~VIiDEAH~ikn~~S 284 (875)
.|=-++|. +|.. --+.+++|+..-. .+..++++|-+.+++. ...+.. ...||+||.|.|....-
T Consensus 176 NQKyrdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~--i~~ViFDEvHyi~D~eR 246 (1041)
T COG4581 176 NQKYRDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRD--IEWVVFDEVHYIGDRER 246 (1041)
T ss_pred hhHHHHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccc--cceEEEEeeeecccccc
Confidence 77555654 4442 2356777764321 2345777777877743 233444 45699999999977543
Q ss_pred HH-H-HHHHhcccc-ceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcc
Q 044036 285 KL-Y-MACLELKTR-NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDE 337 (875)
Q Consensus 285 ~~-~-kal~~l~~~-~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~ 337 (875)
.. + ..+..+... +.++||||- ++..+|..|+..
T Consensus 247 G~VWEE~Ii~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 247 GVVWEEVIILLPDHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred chhHHHHHHhcCCCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 32 2 334444443 779999993 456677777753
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.68 E-value=8.7e-06 Score=97.37 Aligned_cols=83 Identities=20% Similarity=0.281 Sum_probs=67.1
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCC-CCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGS-TPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~-~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
..|+.++.+-+...++.|..|||-+.++..-+.|...|...|+++..++.. ...+.-.++|.+=-. ..-+-|+|..
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~---~GaVTIATNM 498 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGR---KGAVTIATNM 498 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCC---CCcEEEeccC
Confidence 369999999999999999999999999999999999999999999999986 333444456665222 2237889999
Q ss_pred cccccCC
Q 044036 594 GGLGLNL 600 (875)
Q Consensus 594 gg~GLNL 600 (875)
+|+|-|+
T Consensus 499 AGRGTDI 505 (939)
T PRK12902 499 AGRGTDI 505 (939)
T ss_pred CCCCcCE
Confidence 9999654
No 148
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.67 E-value=3.8e-06 Score=103.52 Aligned_cols=88 Identities=15% Similarity=0.087 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccC
Q 044036 520 ALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLN 599 (875)
Q Consensus 520 ~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLN 599 (875)
.+.+.|..+...+.++||+..+.++++.+...|....+.. ...|... .|.+++++|+.+++. +|+.|....||+|
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~--vLlG~~sFwEGVD 709 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ--ILLGLGSFWEGVD 709 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe--EEEecchhhCCCC
Confidence 4444444444566789999999999999888887665554 5566432 356799999985443 7788899999999
Q ss_pred CCC--CCEEEEcCCC
Q 044036 600 LVS--ANRVVIFDPN 612 (875)
Q Consensus 600 L~~--An~VI~~D~~ 612 (875)
++. +..||+.-.|
T Consensus 710 ~p~~~~~~viI~kLP 724 (820)
T PRK07246 710 FVQADRMIEVITRLP 724 (820)
T ss_pred CCCCCeEEEEEecCC
Confidence 963 5666776655
No 149
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.60 E-value=1.1e-06 Score=100.84 Aligned_cols=238 Identities=18% Similarity=0.239 Sum_probs=132.4
Q ss_pred cCCchhhhcccHHHHHHHHHHHHHhhC------CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCc
Q 044036 128 QVPASINCRLLEHQREGVKFLYKLYKN------KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGY 201 (875)
Q Consensus 128 ~vP~~i~~~L~pyQ~~gv~~l~~~~~~------~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (875)
.+|..-...|-.-|+++|-+..+.... .-|-+|+|.-|.||-.++..+|..-+-+ ..++
T Consensus 256 alP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk---------------GRKr 320 (1300)
T KOG1513|consen 256 ALPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK---------------GRKR 320 (1300)
T ss_pred ecccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc---------------ccce
Confidence 456534467888999999998766542 3477899999999877655555433211 2445
Q ss_pred EEEEcC-cchHHHHHHHHHHhcCCcEEE----------EeCCChhHHHHHHHhCCceEEEeecccccccc--------cc
Q 044036 202 VLIICP-SSVIQNWEIEFSRWSTFNVSI----------YHGPNRDMILEKLEACGVEVLITSFDSYRIHG--------SI 262 (875)
Q Consensus 202 ~LIV~P-~sLl~qW~~E~~k~~~~~v~v----------~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--------~~ 262 (875)
.|.+.- .-|-..-++.+...+.-.+.| +.+.... ...-.|+.+||..+.-.. ..
T Consensus 321 AlW~SVSsDLKfDAERDL~DigA~~I~V~alnK~KYakIss~en~-------n~krGViFaTYtaLIGEs~~~~~kyrtR 393 (1300)
T KOG1513|consen 321 ALWFSVSSDLKFDAERDLRDIGATGIAVHALNKFKYAKISSKENT-------NTKRGVIFATYTALIGESQGKGGKYRTR 393 (1300)
T ss_pred eEEEEeccccccchhhchhhcCCCCccceehhhcccccccccccC-------CccceeEEEeeHhhhhhccccCchHHHH
Confidence 555544 456555666666554322211 1111111 112369999998775221 11
Q ss_pred ccc-ccc------cEEEEcCCccccC-------cccHHHHHHHhc----cccceEEeecCCCCCCHHHHHHHHhhhCCCC
Q 044036 263 LSE-VNW------EIVIVDEAHRLKN-------EKSKLYMACLEL----KTRNRIGLTGTIMQNKIMELYNLFDWVAPGS 324 (875)
Q Consensus 263 l~~-~~w------~~VIiDEAH~ikn-------~~S~~~kal~~l----~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~ 324 (875)
+.. ++| .++|+||||+.|| ..+++.+++..| ...+++--|||-- .|=-+|...++-|.
T Consensus 394 ~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA----sEPrNMaYM~RLGl 469 (1300)
T KOG1513|consen 394 FRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA----SEPRNMAYMVRLGL 469 (1300)
T ss_pred HHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC----CCcchhhhhhhhcc
Confidence 111 234 4899999999999 345666666555 4556677788843 33345555566666
Q ss_pred CCCHH---HHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHH
Q 044036 325 LGTRE---HFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKR 401 (875)
Q Consensus 325 ~~~~~---~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~ 401 (875)
||... +|.+++.-.-+.|...-.. -.+...++...+-|.-. +......+--++|+++-++
T Consensus 470 WGegtaf~eF~eFi~AvEkRGvGAMEI-----------VAMDMK~rGmYiARQLS------FkgVsFrieEv~ls~eF~k 532 (1300)
T KOG1513|consen 470 WGEGTAFPEFEEFIHAVEKRGVGAMEI-----------VAMDMKLRGMYIARQLS------FKGVSFRIEEVPLSKEFRK 532 (1300)
T ss_pred ccCCCcCccHHHHHHHHHhcCCceeee-----------eehhhhhhhhhhhhhcc------ccCceEEEEecccCHHHHH
Confidence 65433 3333333322333221100 01111222222222211 2345567778999999999
Q ss_pred HHHHHhc
Q 044036 402 AYRRLLQ 408 (875)
Q Consensus 402 ~Y~~~l~ 408 (875)
.|+.-.+
T Consensus 533 ~Yn~a~~ 539 (1300)
T KOG1513|consen 533 VYNRAAE 539 (1300)
T ss_pred HHHHHHH
Confidence 9987544
No 150
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.57 E-value=1.4e-06 Score=100.08 Aligned_cols=142 Identities=19% Similarity=0.239 Sum_probs=91.4
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~ 212 (875)
...|-|+|..+|. +..++..+++..-+-.|||+.|=..++..+. ...+++.-.|- .|-.
T Consensus 127 PF~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr----------------~kQRVIYTSPIKALSN 186 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLR----------------EKQRVIYTSPIKALSN 186 (1041)
T ss_pred CcccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHH----------------hcCeEEeeChhhhhcc
Confidence 3578899999986 5566889999999999999997766655432 35678888894 5555
Q ss_pred HHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccc----ccccccccccEEEEcCCccccCcccHH-H
Q 044036 213 NWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIH----GSILSEVNWEIVIVDEAHRLKNEKSKL-Y 287 (875)
Q Consensus 213 qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~----~~~l~~~~w~~VIiDEAH~ikn~~S~~-~ 287 (875)
|=.+|+..=+. +|...+|+-.-. .....+|+|-+.++.. .+.+..+.| ||+||.|+++...-.. |
T Consensus 187 QKYREl~~EF~-DVGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVW 256 (1041)
T KOG0948|consen 187 QKYRELLEEFK-DVGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVW 256 (1041)
T ss_pred hhHHHHHHHhc-ccceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceee
Confidence 54455543221 455555542111 1235788888877742 345566666 9999999998754322 2
Q ss_pred -HHHHhc-cccceEEeecCC
Q 044036 288 -MACLEL-KTRNRIGLTGTI 305 (875)
Q Consensus 288 -kal~~l-~~~~rllLTGTP 305 (875)
..+--+ ..-+-++||||-
T Consensus 257 EETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 257 EETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred eeeEEeccccceEEEEeccC
Confidence 122223 344558999993
No 151
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.56 E-value=5.8e-06 Score=94.92 Aligned_cols=109 Identities=22% Similarity=0.338 Sum_probs=77.8
Q ss_pred eEEEEecchhHHHHHHHHHHHc----CCc----EEEEeCCCCHHHHHHHHHHhcCCC-CceEEEEecCCcccccCCCCCC
Q 044036 534 KILLFSYSVRMLDILEKFLIRK----GYS----FSRLDGSTPSNLRQSLVDDFNSSP-SKQVFLISTRAGGLGLNLVSAN 604 (875)
Q Consensus 534 KVLIFs~~~~~ld~L~~~L~~~----g~~----~~~ldG~~~~~eR~~~i~~F~~~~-~~~v~LiSt~agg~GLNL~~An 604 (875)
-+|||=.-...++.....|... +-. +.-++|+++.++..++ |...| +.+-+++||+.+...|.+.+.-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5888888887777766666543 222 4568999998876544 65544 5566899999999999999988
Q ss_pred EEE--------EcCCCC-------CchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 605 RVV--------IFDPNW-------NPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 605 ~VI--------~~D~~W-------Np~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
+|| .|+|.- -|..-.||.-|++|-|.+.+..+|||.++.-.
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 775 333311 12344567777777777899999999997765
No 152
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.53 E-value=1.4e-05 Score=100.29 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=65.0
Q ss_pred HHHHHHHHHhh-cCCCeEEEEecchhHHHHHHHHHHHcCC--cEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 519 RALEKLMYSWA-SKGDKILLFSYSVRMLDILEKFLIRKGY--SFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 519 ~~L~~LL~~~~-~~g~KVLIFs~~~~~ld~L~~~L~~~g~--~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
..+.+.|..+. ..+.++|||..+..++..+...|..... .+..+.=+++...|.+++++|+..++. +|+.+.+..
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~--iLlG~~sFw 815 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA--ILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe--EEEecCccc
Confidence 34444444443 3556888888888999999888875422 132333222224578899999975443 677789999
Q ss_pred cccCCCCC--CEEEEcCCCC-Cch
Q 044036 596 LGLNLVSA--NRVVIFDPNW-NPA 616 (875)
Q Consensus 596 ~GLNL~~A--n~VI~~D~~W-Np~ 616 (875)
||+|+.+. ..|||.-.|+ +|.
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCC
Confidence 99999984 7888988777 443
No 153
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.52 E-value=9.7e-07 Score=107.16 Aligned_cols=183 Identities=19% Similarity=0.201 Sum_probs=116.0
Q ss_pred cHHHHHHHHHHHHHhhCC----------------------------------CCcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 138 LEHQREGVKFLYKLYKNK----------------------------------HGGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~~~~----------------------------------~ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
.|||.+||.-+...+..- .+..+..++|+|||.+++..+..+....
T Consensus 8 l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~ 87 (986)
T PRK15483 8 LPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELHQKY 87 (986)
T ss_pred ChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHHHHc
Confidence 789999999888776321 2556899999999999999998886432
Q ss_pred CCCcchhhcccccCCCCcEEEEcCcc-hHHHHHHHHH-----Hh----cC---CcEEEEeCCC-----h---hHHHHHHH
Q 044036 184 ESSDSTILKDNKVDKKGYVLIICPSS-VIQNWEIEFS-----RW----ST---FNVSIYHGPN-----R---DMILEKLE 242 (875)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~qW~~E~~-----k~----~~---~~v~v~~G~~-----r---~~~~~~~~ 242 (875)
...++|||||.. +.....+-+. .+ .+ ..+.+|.... + ...+..+.
T Consensus 88 --------------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa 153 (986)
T PRK15483 88 --------------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFV 153 (986)
T ss_pred --------------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHH
Confidence 457899999974 3333433222 12 11 4556666443 1 12223333
Q ss_pred hC------CceEEEeeccccccccc--cc--------ccccc-------cEEEEcCCccccCcccHHHHHHHhccccceE
Q 044036 243 AC------GVEVLITSFDSYRIHGS--IL--------SEVNW-------EIVIVDEAHRLKNEKSKLYMACLELKTRNRI 299 (875)
Q Consensus 243 ~~------~~~VvItTy~~l~~~~~--~l--------~~~~w-------~~VIiDEAH~ikn~~S~~~kal~~l~~~~rl 299 (875)
.. ...|+|+|.+++..... .. ....| -+||+||+|++.. ..+.++++.+++..+.+
T Consensus 154 ~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~l 232 (986)
T PRK15483 154 KASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DNKFYQAIEALKPQMII 232 (986)
T ss_pred hccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-chHHHHHHHhcCcccEE
Confidence 32 57899999998865321 00 11223 2899999999955 34577999999999999
Q ss_pred EeecCCCC-------CCH--HHHHHHHhhhCCCCCCCHHHHHHHhcchhc
Q 044036 300 GLTGTIMQ-------NKI--MELYNLFDWVAPGSLGTREHFREFYDEPLK 340 (875)
Q Consensus 300 lLTGTPiq-------N~~--~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~ 340 (875)
..|||--. |.. .++++|+-- ++..+.|......-|.
T Consensus 233 rysAT~~~~~~~~g~~~~~~~d~~NlvY~-----LdavdAyn~~LVK~I~ 277 (986)
T PRK15483 233 RFGATFPDITEGKGKNKCTRKDYYNLQFD-----LNAVDSFNDGLVKGVD 277 (986)
T ss_pred EEeeecCCccccccccccccccccCceee-----cCHHHHHHhCCcceEE
Confidence 99999643 111 124444433 3445667666655443
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=2.8e-05 Score=95.16 Aligned_cols=96 Identities=14% Similarity=0.243 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHhcCC--CCceEEE
Q 044036 519 RALEKLMYSWAS-KGDKILLFSYSVRMLDILEKFLIRKGY-------SFSRLDGSTPSNLRQSLVDDFNSS--PSKQVFL 588 (875)
Q Consensus 519 ~~L~~LL~~~~~-~g~KVLIFs~~~~~ld~L~~~L~~~g~-------~~~~ldG~~~~~eR~~~i~~F~~~--~~~~v~L 588 (875)
..+.+.|..+.. ....+|||..+-..++.+...+...|+ ....+.+... .++.+++++|... ....-+|
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCceEE
Confidence 344444444432 456789998888888888887765432 2344555432 6789999999642 1112366
Q ss_pred Eec--CCcccccCCCC--CCEEEEcCCCC-Cc
Q 044036 589 IST--RAGGLGLNLVS--ANRVVIFDPNW-NP 615 (875)
Q Consensus 589 iSt--~agg~GLNL~~--An~VI~~D~~W-Np 615 (875)
+++ ...+||||+.+ +..||++-.|+ ||
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCC
Confidence 665 67889999997 78999998887 54
No 155
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.46 E-value=1.3e-06 Score=109.04 Aligned_cols=142 Identities=22% Similarity=0.249 Sum_probs=98.3
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHHHHHHHhcCCcEEEEeCC
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWEIEFSRWSTFNVSIYHGP 232 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~~E~~k~~~~~v~v~~G~ 232 (875)
.+.||++-|-.|+|||++++-++..++.. .....+++|+-. -|-.|-.++|..+.......-...
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~--------------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~ 337 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLEL--------------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAE 337 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhc--------------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhccccc
Confidence 34689999999999999988777776543 246668888884 577889999999877222211444
Q ss_pred ChhHHHHHHHhCCceEEEeecccccccccc----cccccccEEEEcCCccccCcccHHHHHHHh-ccccceEEeecCCCC
Q 044036 233 NRDMILEKLEACGVEVLITSFDSYRIHGSI----LSEVNWEIVIVDEAHRLKNEKSKLYMACLE-LKTRNRIGLTGTIMQ 307 (875)
Q Consensus 233 ~r~~~~~~~~~~~~~VvItTy~~l~~~~~~----l~~~~w~~VIiDEAH~ikn~~S~~~kal~~-l~~~~rllLTGTPiq 307 (875)
+.....+.+....-.|+|||-+.|...... ....+.-+||+||||+-- .....+.+.. +..-.-+++||||+.
T Consensus 338 s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~~~~~~~~a~~~gFTGTPi~ 415 (962)
T COG0610 338 STSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKLLKKALKKAIFIGFTGTPIF 415 (962)
T ss_pred CHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHHHHHHhccceEEEeeCCccc
Confidence 555555555555558999999988755422 234567899999999953 2334444433 355677999999986
Q ss_pred CCHH
Q 044036 308 NKIM 311 (875)
Q Consensus 308 N~~~ 311 (875)
..-.
T Consensus 416 ~~d~ 419 (962)
T COG0610 416 KEDK 419 (962)
T ss_pred cccc
Confidence 5433
No 156
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.42 E-value=1.5e-05 Score=96.56 Aligned_cols=109 Identities=20% Similarity=0.295 Sum_probs=79.8
Q ss_pred CCeEEEEecchhHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhcCCCCc-eEEEEecCCcccccCCCCCCEE
Q 044036 532 GDKILLFSYSVRMLDILEKFLIR----KGYSFSRLDGSTPSNLRQSLVDDFNSSPSK-QVFLISTRAGGLGLNLVSANRV 606 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~-~v~LiSt~agg~GLNL~~An~V 606 (875)
..-+|||-.-...++.....|.. ....++-++|..+.++..++ |+..+.. +-+++||+++..+|++.+...|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 34588998888888888888876 34778889999999887764 6655444 3389999999999999998888
Q ss_pred E--------EcCCCC----------CchhHHHhhhcccccCCcceEEEEEEeeCCCHH
Q 044036 607 V--------IFDPNW----------NPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLE 646 (875)
Q Consensus 607 I--------~~D~~W----------Np~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiE 646 (875)
| .||+.- +-+.-.||-||++| +.+-.+|||.+++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 6 333322 11334456666655 7778899999986555
No 157
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.42 E-value=3.6e-05 Score=91.08 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHHHHH
Q 044036 140 HQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWEIEF 218 (875)
Q Consensus 140 yQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~~E~ 218 (875)
+|++ ++.....+..+++..++-.|||...--++...+.. ...+-++-|+|+ .++.|-..++
T Consensus 515 WQ~e----lLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe--------------sD~~VVIyvaPtKaLVnQvsa~V 576 (1330)
T KOG0949|consen 515 WQRE----LLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE--------------SDSDVVIYVAPTKALVNQVSANV 576 (1330)
T ss_pred HHHH----HhhhhhcccceEEEeeccCCceeccHHHHHHHHhh--------------cCCCEEEEecchHHHhhhhhHHH
Confidence 4655 34455668888999999999999998888877643 357789999994 7788876665
Q ss_pred HHhc--C--CcEEEEeCC-ChhHHHHHHHhCCceEEEeecccccccccc---cc--cccccEEEEcCCccccCc-ccHHH
Q 044036 219 SRWS--T--FNVSIYHGP-NRDMILEKLEACGVEVLITSFDSYRIHGSI---LS--EVNWEIVIVDEAHRLKNE-KSKLY 287 (875)
Q Consensus 219 ~k~~--~--~~v~v~~G~-~r~~~~~~~~~~~~~VvItTy~~l~~~~~~---l~--~~~w~~VIiDEAH~ikn~-~S~~~ 287 (875)
..-+ + .......|+ +++-.. ....+.|+||-.+.+....-. -. .-+..+||+||.|.+.+. .+..+
T Consensus 577 yaRF~~~t~~rg~sl~g~ltqEYsi---np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~ 653 (1330)
T KOG0949|consen 577 YARFDTKTFLRGVSLLGDLTQEYSI---NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLW 653 (1330)
T ss_pred HHhhccCccccchhhHhhhhHHhcC---CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHH
Confidence 4332 1 222222222 111111 123578999999877632211 00 114579999999999885 46666
Q ss_pred HHHHhccccceEEeecCCCCCCHHHHHHHHh
Q 044036 288 MACLELKTRNRIGLTGTIMQNKIMELYNLFD 318 (875)
Q Consensus 288 kal~~l~~~~rllLTGTPiqN~~~El~~Ll~ 318 (875)
.-+--+-.-..++|||| ++|+..++..++
T Consensus 654 Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 654 EQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred HHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 66666666778999999 678877776665
No 158
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.40 E-value=0.00014 Score=86.20 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHHHHHH
Q 044036 141 QREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWEIEFS 219 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~~E~~ 219 (875)
|.+-+.++.+.+..+...++-..+|+|||+..+..+...... ....++||++|+ .|..|+.+++.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~--------------~~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE--------------RPDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh--------------ccCceEEEECCcHHHHHHHHHHHH
Confidence 788888888888888888888899999999977665443211 125789999996 57788887766
Q ss_pred Hhc
Q 044036 220 RWS 222 (875)
Q Consensus 220 k~~ 222 (875)
...
T Consensus 68 ~l~ 70 (636)
T TIGR03117 68 RLT 70 (636)
T ss_pred HHH
Confidence 544
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.39 E-value=1.5e-05 Score=94.43 Aligned_cols=111 Identities=18% Similarity=0.269 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCccc
Q 044036 517 KMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGL 596 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~ 596 (875)
+......|+..+ ..|++|.|||......++++.++...+..+..++|..+..+ ++.+ ...+|+ |=|.+..+
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W---~~~~Vv-iYT~~itv 338 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW---KKYDVV-IYTPVITV 338 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc---cceeEE-EEeceEEE
Confidence 334555555554 58999999999999999999999999999999999877553 2223 233444 44558888
Q ss_pred ccCCCC--CCEEEEc--CCCCCchh--HHHhhhcccccCCcceEEEE
Q 044036 597 GLNLVS--ANRVVIF--DPNWNPAQ--DLQAQDRSFRFGQKRHVIVF 637 (875)
Q Consensus 597 GLNL~~--An~VI~~--D~~WNp~~--~~QaigR~~RiGQ~k~V~Vy 637 (875)
|+++-. -+.|..| .....|.. ..|.+||+..+.. +.+.||
T Consensus 339 G~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 339 GLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred EeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 998865 4566655 33445654 5899999987764 344444
No 160
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.33 E-value=6.7e-07 Score=84.72 Aligned_cols=127 Identities=19% Similarity=0.183 Sum_probs=67.9
Q ss_pred CCCcEEecCCCCchHHHHHHHHH-HHhcCCCCCcchhhcccccCCCCcEEEEcCcchHH-HHHHHHHHhcCCcEEEEeCC
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLA-AVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQ-NWEIEFSRWSTFNVSIYHGP 232 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~-~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~-qW~~E~~k~~~~~v~v~~G~ 232 (875)
+.--+|-.-+|.|||..++.-+. ..+ ....++||+.|+.++. +-.+.++. ..+. ++-.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i----------------~~~~rvLvL~PTRvva~em~~aL~~---~~~~-~~t~ 63 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAI----------------KRRLRVLVLAPTRVVAEEMYEALKG---LPVR-FHTN 63 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHH----------------HTT--EEEEESSHHHHHHHHHHTTT---SSEE-EEST
T ss_pred CceeEEecCCCCCCcccccHHHHHHHH----------------HccCeEEEecccHHHHHHHHHHHhc---CCcc-cCce
Confidence 34446788899999998775433 232 3578899999987654 33333331 2222 2211
Q ss_pred ChhHHHHHHHhCCceEEEeeccccccc-ccccccccccEEEEcCCccccCcccHHHH-HHHhc---cccceEEeecCCC
Q 044036 233 NRDMILEKLEACGVEVLITSFDSYRIH-GSILSEVNWEIVIVDEAHRLKNEKSKLYM-ACLEL---KTRNRIGLTGTIM 306 (875)
Q Consensus 233 ~r~~~~~~~~~~~~~VvItTy~~l~~~-~~~l~~~~w~~VIiDEAH~ikn~~S~~~k-al~~l---~~~~rllLTGTPi 306 (875)
.... ...++.-|-+++|.++... .......+|+++|+||||-. ++.|-..+ .+..+ .....+++||||-
T Consensus 64 ~~~~----~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 64 ARMR----THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp TSS--------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred eeec----cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 1111 1124456888999887643 22344568999999999984 44443322 22223 2235799999993
No 161
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.32 E-value=2.8e-05 Score=94.85 Aligned_cols=101 Identities=22% Similarity=0.228 Sum_probs=77.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCc-EEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCC--CCEEE
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYS-FSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVS--ANRVV 607 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~-~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~--An~VI 607 (875)
.+.++|||..+-.++..+...|...... .....|..+ +..++++|...... .|++.+....||+|+.+ ...||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 4558999999999999999999876653 445566654 44899999887664 68999999999999998 57889
Q ss_pred EcCCCCC-c-----------------------------hhHHHhhhcccccCCcceEE
Q 044036 608 IFDPNWN-P-----------------------------AQDLQAQDRSFRFGQKRHVI 635 (875)
Q Consensus 608 ~~D~~WN-p-----------------------------~~~~QaigR~~RiGQ~k~V~ 635 (875)
+.-.||- | ....|++||+.|--+.+-|.
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 8888773 1 23459999999954445543
No 162
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.22 E-value=1.5e-05 Score=94.71 Aligned_cols=152 Identities=23% Similarity=0.227 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHHHHh---------hCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc
Q 044036 138 LEHQREGVKFLYKLY---------KNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS 208 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~---------~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 208 (875)
.-|+..|+..|++.. ..+.+.|.+.+++.|||+.+=.++.... .-..+.+|.+.|-
T Consensus 214 ~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~---------------l~~rr~~llilp~ 278 (1008)
T KOG0950|consen 214 LYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREV---------------LCRRRNVLLILPY 278 (1008)
T ss_pred HHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHH---------------HHHhhceeEecce
Confidence 345666666554332 3567889999999999998755554321 1234557888884
Q ss_pred -chHHHHHHHHHHhc---CCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccccccc----ccccEEEEcCCcccc
Q 044036 209 -SVIQNWEIEFSRWS---TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSE----VNWEIVIVDEAHRLK 280 (875)
Q Consensus 209 -sLl~qW~~E~~k~~---~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~----~~w~~VIiDEAH~ik 280 (875)
+.+.-=..++..+. ++.+--|.|....... ....+|.|+|-+........|-. ..-.+||+||-|.+.
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee
Confidence 44444445555553 3677777765322111 11347999998876544332211 234789999999995
Q ss_pred Ccc--cH----HHHHHHhcccc--ceEEeecCCCCC
Q 044036 281 NEK--SK----LYMACLELKTR--NRIGLTGTIMQN 308 (875)
Q Consensus 281 n~~--S~----~~kal~~l~~~--~rllLTGTPiqN 308 (875)
... .- ..+.+..-... ..++||||--.|
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 532 22 22222222222 369999996543
No 163
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.08 E-value=1.4e-05 Score=89.42 Aligned_cols=100 Identities=27% Similarity=0.357 Sum_probs=82.4
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHHcCCc-EEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEE
Q 044036 530 SKGDKILLFSYSVRMLDILEKFLIRKGYS-FSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI 608 (875)
Q Consensus 530 ~~g~KVLIFs~~~~~ld~L~~~L~~~g~~-~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~ 608 (875)
..|+-|+-||.. -+-.+...+...|.. +++|+|+.|++.|.+.-..||+..+..-+|+.|+|.|.||||. ..+|||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF 432 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIF 432 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEE
Confidence 589999999874 333455556666665 9999999999999999999999877777899999999999995 699999
Q ss_pred cCCC---------CCchhHHHhhhcccccCCcc
Q 044036 609 FDPN---------WNPAQDLQAQDRSFRFGQKR 632 (875)
Q Consensus 609 ~D~~---------WNp~~~~QaigR~~RiGQ~k 632 (875)
++.. -.-....|.-|||+|.|.+-
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 9876 23456779999999999873
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00023 Score=85.22 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=90.4
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
-.|+.++.+-+...+..|..|||-+.++..-+.+...|...|++...++-.-. .|++-|-.+-..+. -+-|+|..+
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~g--aVTiATNMA 487 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPG--AVTIATNMA 487 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCC--ccccccccc
Confidence 36899999999999999999999999999999999999999999988887754 44444444433222 377899999
Q ss_pred ccccCCCC-CC----------EEEEcCCCCCchhHHHhhhcccccCC
Q 044036 595 GLGLNLVS-AN----------RVVIFDPNWNPAQDLQAQDRSFRFGQ 630 (875)
Q Consensus 595 g~GLNL~~-An----------~VI~~D~~WNp~~~~QaigR~~RiGQ 630 (875)
|+|-+|.- .+ +||--+-+=+-..+.|-.||++|.|-
T Consensus 488 GRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 488 GRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred cCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 99999874 33 56666777777788899999999994
No 165
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.00 E-value=0.00079 Score=81.81 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHhhcC--CCeEEEEecchhHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHhcCCCCc-eE
Q 044036 517 KMRALEKLMYSWASK--GDKILLFSYSVRMLDILEKFLIRK-------GYSFSRLDGSTPSNLRQSLVDDFNSSPSK-QV 586 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~--g~KVLIFs~~~~~ld~L~~~L~~~-------g~~~~~ldG~~~~~eR~~~i~~F~~~~~~-~v 586 (875)
....+..++..+.+. ..-+|||-.-...+..+...|... .+-+..++++++..+.+.+ |+..+.. +=
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 556677777776543 358999999999888888888642 2456778999998776665 5555543 45
Q ss_pred EEEecCCcccccCCCCCCEEE--------EcCCCCC----------chhHHHhhhcccccCCcceEEEEEEeeCCC
Q 044036 587 FLISTRAGGLGLNLVSANRVV--------IFDPNWN----------PAQDLQAQDRSFRFGQKRHVIVFRLLSAGS 644 (875)
Q Consensus 587 ~LiSt~agg~GLNL~~An~VI--------~~D~~WN----------p~~~~QaigR~~RiGQ~k~V~VyrLi~~gT 644 (875)
++++|..+..+|.+.+.-+|| .|||.-| -+.-.||.||++| .++-.+|+|.+..-
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSR 545 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhh
Confidence 899999999999999877665 4565433 2445688888887 67778899988653
No 166
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.99 E-value=1.4e-05 Score=84.93 Aligned_cols=93 Identities=22% Similarity=0.305 Sum_probs=73.6
Q ss_pred HHHHHhcCCCCceEEEEecCCcccccCCCCC-------CEE-EEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC-
Q 044036 573 SLVDDFNSSPSKQVFLISTRAGGLGLNLVSA-------NRV-VIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG- 643 (875)
Q Consensus 573 ~~i~~F~~~~~~~v~LiSt~agg~GLNL~~A-------n~V-I~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g- 643 (875)
...+.|+++. ..|++|| +||+.|+.|++- -+| |.++++|+....+|.+||+||-||..+. +|++++.+
T Consensus 52 ~e~~~F~~g~-k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P-~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGE-KDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAP-EYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCC-ceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCC-EEEEeecCC
Confidence 4677999984 4566665 999999999953 244 6799999999999999999999998774 45555555
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCcc
Q 044036 644 SLEELVYTRQVYKQQLSNIAVSGKL 668 (875)
Q Consensus 644 TiEE~I~~rq~~K~~l~~~~~~g~~ 668 (875)
..|.+.......|.+-..+...|+.
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccCcc
Confidence 5688888888888887777777664
No 167
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.83 E-value=0.0007 Score=77.66 Aligned_cols=106 Identities=16% Similarity=0.291 Sum_probs=70.4
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhc-CCCCceEEEEecCCcccccCCCCCCEEEEcCC----CCCc-----------hhHH
Q 044036 556 GYSFSRLDGSTPSNLRQSLVDDFN-SSPSKQVFLISTRAGGLGLNLVSANRVVIFDP----NWNP-----------AQDL 619 (875)
Q Consensus 556 g~~~~~ldG~~~~~eR~~~i~~F~-~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~----~WNp-----------~~~~ 619 (875)
++.+.-|+..++..-..++ |+ ..++.+-++++|..+...|.+.+..+||=-.. .+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 5677777888886655444 55 33445669999999999999999888873211 1344 2233
Q ss_pred HhhhcccccCCcceEEEEEEeeCCCHHHHHHHH---HHHHHHHHHHHh
Q 044036 620 QAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTR---QVYKQQLSNIAV 664 (875)
Q Consensus 620 QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~r---q~~K~~l~~~~~ 664 (875)
+|--|++|.|.+.+-++|||.++.+..+-++.- -+.+.++.+.|+
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHH
Confidence 444555555668888999999998876665543 234455666554
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.76 E-value=0.00017 Score=78.58 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
.||.|++-+.-++..+..+..+|+-.++|+|||+..+..+...
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~ 51 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTW 51 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHH
Confidence 4999999999999999999999999999999999988776544
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.76 E-value=0.00017 Score=78.58 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
.||.|++-+.-++..+..+..+|+-.++|+|||+..+..+...
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~ 51 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTW 51 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHH
Confidence 4999999999999999999999999999999999988776544
No 170
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.66 E-value=0.00069 Score=70.77 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=46.8
Q ss_pred cccHHHHHHHHHHHHHhhCCCC-cEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHG-GILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQN 213 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~g-gILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~q 213 (875)
+|-+.|.++|..++. ..+ +++.-..|+|||.++.+++..++.... .......+++||+||++ .+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~--------~~~~~~~~~il~~~~sN~avd~ 68 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFK--------SRSADRGKKILVVSPSNAAVDN 68 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH---------------HCCCSS-EEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchh--------hhhhhccccceeecCCchhHHH
Confidence 477899999987655 455 778888999999888887777632100 00134678899999964 4777
Q ss_pred HHHHHHH
Q 044036 214 WEIEFSR 220 (875)
Q Consensus 214 W~~E~~k 220 (875)
-...+.+
T Consensus 69 ~~~~l~~ 75 (236)
T PF13086_consen 69 ILERLKK 75 (236)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 6666665
No 171
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.0008 Score=78.52 Aligned_cols=63 Identities=25% Similarity=0.461 Sum_probs=47.0
Q ss_pred HhcCCC-CceEEEEecCCcccccCCCCCCEEE--------EcCC---------CC-CchhHHHhhhcccccCCcceEEEE
Q 044036 577 DFNSSP-SKQVFLISTRAGGLGLNLVSANRVV--------IFDP---------NW-NPAQDLQAQDRSFRFGQKRHVIVF 637 (875)
Q Consensus 577 ~F~~~~-~~~v~LiSt~agg~GLNL~~An~VI--------~~D~---------~W-Np~~~~QaigR~~RiGQ~k~V~Vy 637 (875)
-|...| +.+.++++|.++...|++++..+|| +||. .| +-+.-.||-|||+|+|- -++|
T Consensus 622 VF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp---GHcY 698 (1172)
T KOG0926|consen 622 VFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP---GHCY 698 (1172)
T ss_pred hccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC---Ccee
Confidence 355444 4578999999999999999999987 3433 33 44556799999999775 4789
Q ss_pred EEeeC
Q 044036 638 RLLSA 642 (875)
Q Consensus 638 rLi~~ 642 (875)
||.+.
T Consensus 699 RLYSS 703 (1172)
T KOG0926|consen 699 RLYSS 703 (1172)
T ss_pred ehhhh
Confidence 99764
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.58 E-value=0.0007 Score=72.08 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=76.7
Q ss_pred hhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHH
Q 044036 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQ 212 (875)
Q Consensus 133 i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~ 212 (875)
++..+++-|+-|+--| ..|-|.=..+|=|||+++..++... .....++-||+...-+.
T Consensus 74 ~g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~~~----------------AL~G~~V~vvT~NdyLA 131 (266)
T PF07517_consen 74 LGLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAALN----------------ALQGKGVHVVTSNDYLA 131 (266)
T ss_dssp TS----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHHHH----------------HTTSS-EEEEESSHHHH
T ss_pred cCCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHHHH----------------HHhcCCcEEEeccHHHh
Confidence 3456777788888555 3477999999999999975444332 12355688888876653
Q ss_pred ----HHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccc---------ccccccccccEEEEcCCccc
Q 044036 213 ----NWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIH---------GSILSEVNWEIVIVDEAHRL 279 (875)
Q Consensus 213 ----qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~---------~~~l~~~~w~~VIiDEAH~i 279 (875)
+|...|-+++++.+....+.......... ...+|+-+|-..+..+ ........++++||||+..+
T Consensus 132 ~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 132 KRDAEEMRPFYEFLGLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHHHHHHHHHHHHTT--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred hccHHHHHHHHHHhhhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 38888888999998887776543322222 2346888876665532 11222357899999998865
No 173
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.53 E-value=0.031 Score=68.94 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=34.6
Q ss_pred ceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcc
Q 044036 584 KQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKR 632 (875)
Q Consensus 584 ~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k 632 (875)
..+++|+|.+...|+|+-. +.+|. |+. .-...+|+.||+.|-|+..
T Consensus 838 ~~~i~v~Tqv~E~g~D~df-d~~~~-~~~-~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDHDY-DWAIA-DPS-SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCeEEEEeeeEEEEecccC-Ceeee-ccC-cHHHHHHHhhcccccccCC
Confidence 4579999999999999864 44443 332 3457889999999999864
No 174
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.44 E-value=0.0019 Score=71.62 Aligned_cols=60 Identities=30% Similarity=0.437 Sum_probs=46.6
Q ss_pred eEEEEecCCcccccCCCCCCEEEEcCCC------CCc-----------hhHHHhhhcccccCCcceEEEEEEeeCCCHH
Q 044036 585 QVFLISTRAGGLGLNLVSANRVVIFDPN------WNP-----------AQDLQAQDRSFRFGQKRHVIVFRLLSAGSLE 646 (875)
Q Consensus 585 ~v~LiSt~agg~GLNL~~An~VI~~D~~------WNp-----------~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiE 646 (875)
+-+++||..+...|.+.+.-+|| ||- +|| ..-.||.-|++|.|.+++-..|||.++...+
T Consensus 314 RkvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred ceEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 55899999999988887765554 554 344 4566899999999999999999999875443
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.22 E-value=0.00059 Score=69.78 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=71.4
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHH
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEI 216 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~ 216 (875)
+-++|...+.-|.. ..-.++--..|+|||+.|++....++.. +...+++|+-|..-+..+.-
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~--------------g~~~kiii~Rp~v~~~~~lG 66 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKE--------------GEYDKIIITRPPVEAGEDLG 66 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHT--------------TS-SEEEEEE-S--TT----
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHh--------------CCCcEEEEEecCCCCccccc
Confidence 44679999988773 5566778889999999999988877643 24566777777543322211
Q ss_pred --------HHHHhcC--Cc-EEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccH
Q 044036 217 --------EFSRWST--FN-VSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSK 285 (875)
Q Consensus 217 --------E~~k~~~--~~-v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~ 285 (875)
-+.-|.. .. ...+.+ +......+..+ .|-+.+...++- . .+++.+||+|||+++.. ..
T Consensus 67 flpG~~~eK~~p~~~p~~d~l~~~~~--~~~~~~~~~~~--~Ie~~~~~~iRG--r---t~~~~~iIvDEaQN~t~--~~ 135 (205)
T PF02562_consen 67 FLPGDLEEKMEPYLRPIYDALEELFG--KEKLEELIQNG--KIEIEPLAFIRG--R---TFDNAFIIVDEAQNLTP--EE 135 (205)
T ss_dssp SS---------TTTHHHHHHHTTTS---TTCHHHHHHTT--SEEEEEGGGGTT-------B-SEEEEE-SGGG--H--HH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhC--hHhHHHHhhcC--eEEEEehhhhcC--c---cccceEEEEecccCCCH--HH
Confidence 1111110 00 000011 11222222233 355555544431 1 23458999999999843 46
Q ss_pred HHHHHHhccccceEEeecCCCCCCHH
Q 044036 286 LYMACLELKTRNRIGLTGTIMQNKIM 311 (875)
Q Consensus 286 ~~kal~~l~~~~rllLTGTPiqN~~~ 311 (875)
....+.++....++.++|-|.|.+..
T Consensus 136 ~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 136 LKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp HHHHHTTB-TT-EEEEEE--------
T ss_pred HHHHHcccCCCcEEEEecCceeecCC
Confidence 66678888889999999999876543
No 176
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.17 E-value=0.013 Score=67.66 Aligned_cols=79 Identities=27% Similarity=0.401 Sum_probs=55.0
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhcC-CCCceEEEEecCCcccccCCCCCCEEEEcCCC------CCc--------------
Q 044036 557 YSFSRLDGSTPSNLRQSLVDDFNS-SPSKQVFLISTRAGGLGLNLVSANRVVIFDPN------WNP-------------- 615 (875)
Q Consensus 557 ~~~~~ldG~~~~~eR~~~i~~F~~-~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~------WNp-------------- 615 (875)
+-++-|+.+.|.+...++ |.- +++.+-+++.|..+...|.+.+.+.|| ||- +||
T Consensus 507 liv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred EEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeech
Confidence 345667888887766555 543 334455777889999999999888876 443 454
Q ss_pred hhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 616 AQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 616 ~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
+.-.||-|||+|.| +-.+|||.++-
T Consensus 582 AsA~QRaGRAGRtg---PGKCfRLYt~~ 606 (902)
T KOG0923|consen 582 ASANQRAGRAGRTG---PGKCFRLYTAW 606 (902)
T ss_pred hhhhhhccccCCCC---CCceEEeechh
Confidence 44568888887755 55689998853
No 177
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.16 E-value=0.0021 Score=73.67 Aligned_cols=70 Identities=26% Similarity=0.307 Sum_probs=53.2
Q ss_pred chhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch
Q 044036 131 ASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV 210 (875)
Q Consensus 131 ~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL 210 (875)
..++..|-+-|+.++.+.... ..=.++--++|+|||.+...++..+.. ...++||.+|+.+
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~---k~l~~I~GPPGTGKT~TlvEiI~qlvk----------------~~k~VLVcaPSn~ 240 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINN---KDLLIIHGPPGTGKTRTLVEIISQLVK----------------QKKRVLVCAPSNV 240 (649)
T ss_pred ccCCccccHHHHHHHHHHhcc---CCceEeeCCCCCCceeeHHHHHHHHHH----------------cCCeEEEEcCchH
Confidence 345667888999999998762 123345568899999999999988853 4678999999876
Q ss_pred -HHHHHHHHH
Q 044036 211 -IQNWEIEFS 219 (875)
Q Consensus 211 -l~qW~~E~~ 219 (875)
++|-.+-+.
T Consensus 241 AVdNiverl~ 250 (649)
T KOG1803|consen 241 AVDNIVERLT 250 (649)
T ss_pred HHHHHHHHhc
Confidence 888877543
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.01 E-value=0.0021 Score=67.65 Aligned_cols=145 Identities=19% Similarity=0.162 Sum_probs=80.7
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH---
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN--- 213 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q--- 213 (875)
+-..|...+.++.+ ..-+++--+.|+|||+.++++....+..+ ...+++|+=|.--...
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~--------------~~~kIiI~RP~v~~ge~LG 121 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHK--------------DVDRIIVTRPVLQADEDLG 121 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcC--------------CeeEEEEeCCCCCchhhhC
Confidence 44568777777654 45667778999999999999988543211 2334444444321110
Q ss_pred -----HHHHHHHhcC--C-cEEEEeCCChhHHHHHH-HhCCceEEEeecccccccccccccccccEEEEcCCccccCccc
Q 044036 214 -----WEIEFSRWST--F-NVSIYHGPNRDMILEKL-EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKS 284 (875)
Q Consensus 214 -----W~~E~~k~~~--~-~v~v~~G~~r~~~~~~~-~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S 284 (875)
-.+-+.-|.. . ....+.|.. ..+.+ ....-.|.|.+...++-. .++-++||+|||+++.- .
T Consensus 122 fLPG~~~eK~~p~~~pi~D~L~~~~~~~---~~~~~~~~~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~ 191 (262)
T PRK10536 122 FLPGDIAEKFAPYFRPVYDVLVRRLGAS---FMQYCLRPEIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVTA--A 191 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhChH---HHHHHHHhccCcEEEecHHHhcCC-----cccCCEEEEechhcCCH--H
Confidence 0111112211 0 000011211 11111 111123555554444321 13448999999999954 5
Q ss_pred HHHHHHHhccccceEEeecCCCCCC
Q 044036 285 KLYMACLELKTRNRIGLTGTIMQNK 309 (875)
Q Consensus 285 ~~~kal~~l~~~~rllLTGTPiqN~ 309 (875)
.....+.++....+++++|-|-|.+
T Consensus 192 ~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred HHHHHHhhcCCCCEEEEeCChhhcc
Confidence 6777788899999999999987654
No 179
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.00 E-value=0.0048 Score=70.98 Aligned_cols=129 Identities=20% Similarity=0.309 Sum_probs=87.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~qW 214 (875)
+|---|..||+..+. +.=.||--++|+|||++..+++.++..+ ..+|+||++|..+ ++|-
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~---------------~~~~VLvcApSNiAVDqL 470 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ---------------HAGPVLVCAPSNIAVDQL 470 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh---------------cCCceEEEcccchhHHHH
Confidence 567789999988776 5566888899999999999999888643 4789999999876 7888
Q ss_pred HHHHHHhcCCcEEEEeCCChhHH--------------------HHHH----------------------------HhCCc
Q 044036 215 EIEFSRWSTFNVSIYHGPNRDMI--------------------LEKL----------------------------EACGV 246 (875)
Q Consensus 215 ~~E~~k~~~~~v~v~~G~~r~~~--------------------~~~~----------------------------~~~~~ 246 (875)
..-|.+-+ ++|+.+....|+.. ++.+ .....
T Consensus 471 aeKIh~tg-LKVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~A 549 (935)
T KOG1802|consen 471 AEKIHKTG-LKVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQA 549 (935)
T ss_pred HHHHHhcC-ceEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhc
Confidence 87777644 66655433322210 0000 01123
Q ss_pred eEEEeecccccccccccccccccEEEEcCCccccCcccHH
Q 044036 247 EVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKL 286 (875)
Q Consensus 247 ~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~ 286 (875)
+|+.||--.. -...|..++|..|++|||-....+.+.+
T Consensus 550 dVIccTcv~A--gd~rl~~~kfr~VLiDEaTQatEpe~Li 587 (935)
T KOG1802|consen 550 DVICCTCVGA--GDRRLSKFKFRTVLIDEATQATEPECLI 587 (935)
T ss_pred CEEEEecccc--cchhhccccccEEEEecccccCCcchhh
Confidence 5665554322 2345667899999999998876665544
No 180
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.87 E-value=0.0047 Score=74.39 Aligned_cols=122 Identities=10% Similarity=-0.035 Sum_probs=84.7
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHHHHHHHhcC-CcEEEEeCCCh----hHH
Q 044036 164 MGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWEIEFSRWST-FNVSIYHGPNR----DMI 237 (875)
Q Consensus 164 mGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~~E~~k~~~-~~v~v~~G~~r----~~~ 237 (875)
.|+|||-..+.++...+.. .+.+||++|. ++..|+..-|...++ ..+.++|+.-. ...
T Consensus 169 ~GSGKTevyl~~i~~~l~~----------------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRA----------------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred CCCcHHHHHHHHHHHHHHc----------------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHH
Confidence 4999999999999887643 4569999995 789999999999887 88999998632 233
Q ss_pred HHHHHhCCceEEEeecccccccccccccccccEEEEcCCccc--cCcccHH----HHHHHh--ccccceEEeecCCC
Q 044036 238 LEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRL--KNEKSKL----YMACLE--LKTRNRIGLTGTIM 306 (875)
Q Consensus 238 ~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~i--kn~~S~~----~kal~~--l~~~~rllLTGTPi 306 (875)
...+..+...|||-|...+-. .--+..+|||||=|.- |...+.. --++.+ ...-..++-|+||-
T Consensus 233 w~~~~~G~~~IViGtRSAvFa-----P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAVFA-----PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred HHHHhCCCCcEEEEcceeEEe-----ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 344556778899999886621 1225689999999864 3332222 112211 23445567799994
No 181
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.76 E-value=0.0055 Score=72.67 Aligned_cols=133 Identities=21% Similarity=0.191 Sum_probs=85.0
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH----HHHHHHHhc--------C
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN----WEIEFSRWS--------T 223 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q----W~~E~~k~~--------~ 223 (875)
.++=+-.|+|+|||.+-+-.+..+..+ -..-+++||||+.-+.- --.++..++ +
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~--------------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~ 140 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKK--------------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTR 140 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHH--------------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcc
Confidence 344467899999999998888877432 23557999999643311 122233322 1
Q ss_pred CcEEEEeCCChhHHHHHHHhCCceEEEeeccccccc---cccccc-----cc---------------ccEEEEcCCcccc
Q 044036 224 FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIH---GSILSE-----VN---------------WEIVIVDEAHRLK 280 (875)
Q Consensus 224 ~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~---~~~l~~-----~~---------------w~~VIiDEAH~ik 280 (875)
+..++|.. .......-..+.+.|++.+.+.+.+. ...++. .+ --+||+||.|++.
T Consensus 141 ~e~~i~~~--~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~ 218 (985)
T COG3587 141 LESYIYDE--DIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFL 218 (985)
T ss_pred eeEEeech--HHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcc
Confidence 45555541 11111112245567888888877655 221111 00 1279999999997
Q ss_pred CcccHHHHHHHhccccceEEeecCC
Q 044036 281 NEKSKLYMACLELKTRNRIGLTGTI 305 (875)
Q Consensus 281 n~~S~~~kal~~l~~~~rllLTGTP 305 (875)
.. .+.+.++.++++.+.+=.+||-
T Consensus 219 ~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 219 GD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred cc-hHHHHHHHhhCceEEEEecccc
Confidence 76 7899999999999999999993
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.74 E-value=0.011 Score=60.59 Aligned_cols=125 Identities=21% Similarity=0.180 Sum_probs=67.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWE 215 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~ 215 (875)
+|-+-|++++..++.. ..+-.+|--..|+|||.....+...+.. ...++++++|++-...=
T Consensus 1 ~L~~~Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~~~~~----------------~g~~v~~~apT~~Aa~~- 61 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAEALEA----------------AGKRVIGLAPTNKAAKE- 61 (196)
T ss_dssp -S-HHHHHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHHHHHH----------------TT--EEEEESSHHHHHH-
T ss_pred CCCHHHHHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHHHHHh----------------CCCeEEEECCcHHHHHH-
Confidence 3678899999988651 1233566677899999876666555432 24679999998653321
Q ss_pred HHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccc--c----ccccccEEEEcCCccccCcccHHHHH
Q 044036 216 IEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSI--L----SEVNWEIVIVDEAHRLKNEKSKLYMA 289 (875)
Q Consensus 216 ~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~--l----~~~~w~~VIiDEAH~ikn~~S~~~ka 289 (875)
+..-..... .|...+...... . .....++||||||-.+.+ ......
T Consensus 62 --L~~~~~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~--~~~~~l 113 (196)
T PF13604_consen 62 --LREKTGIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS--RQLARL 113 (196)
T ss_dssp --HHHHHTS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH--HHHHHH
T ss_pred --HHHhhCcch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccCH--HHHHHH
Confidence 221111111 111111100000 0 023458999999999844 244455
Q ss_pred HHhccc-cceEEeecCCCC
Q 044036 290 CLELKT-RNRIGLTGTIMQ 307 (875)
Q Consensus 290 l~~l~~-~~rllLTGTPiq 307 (875)
+..+.. ..+++|.|-|-|
T Consensus 114 l~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 114 LRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp HHHS-T-T-EEEEEE-TTS
T ss_pred HHHHHhcCCEEEEECCcch
Confidence 555543 778999999865
No 183
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.56 E-value=0.0058 Score=60.92 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=55.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecC--CcccccCCCC--
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKG----YSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTR--AGGLGLNLVS-- 602 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g----~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~--agg~GLNL~~-- 602 (875)
.+.++|||..+-..++.+...+...+ +.+ ...+ ..++.+++++|..+++. +|+++. ...+|+|+.+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v-~~q~---~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPV-FVQG---SKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCE-EEST---CCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--ECES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccccccee-eecC---cchHHHHHHHHHhccCe--EEEEEecccEEEeecCCCch
Confidence 56899999999999999999987653 332 2333 35788999999996554 777777 8999999996
Q ss_pred CCEEEEcCCCC
Q 044036 603 ANRVVIFDPNW 613 (875)
Q Consensus 603 An~VI~~D~~W 613 (875)
+..||+.-.|+
T Consensus 82 ~r~vii~glPf 92 (167)
T PF13307_consen 82 LRAVIIVGLPF 92 (167)
T ss_dssp EEEEEEES---
T ss_pred hheeeecCCCC
Confidence 77899988886
No 184
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.52 E-value=0.012 Score=66.40 Aligned_cols=117 Identities=16% Similarity=0.170 Sum_probs=94.4
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHH----HHHcCC----cEEEEeCCCCHHHHHHHHHHhcCCCC
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKF----LIRKGY----SFSRLDGSTPSNLRQSLVDDFNSSPS 583 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~----L~~~g~----~~~~ldG~~~~~eR~~~i~~F~~~~~ 583 (875)
.+.+.|+.-...++.++...|-++|-||...+..+++... |...|- .+..+.|+-..++|.++-.+.-.+.-
T Consensus 505 ~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L 584 (1034)
T KOG4150|consen 505 SEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL 584 (1034)
T ss_pred hhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee
Confidence 3456788888889989889999999999999987765543 333332 24456788899999998776555432
Q ss_pred ceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCC
Q 044036 584 KQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630 (875)
Q Consensus 584 ~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ 630 (875)
-=+|+|.|...||++..-|.|+....|.+-+...|-.||++|-..
T Consensus 585 --~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 585 --CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred --eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC
Confidence 368899999999999999999999999999999999999999643
No 185
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.44 E-value=0.039 Score=66.65 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=51.5
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~ 212 (875)
...|-+.|+.+|.+++. .....++--.+|+|||.++++++..+... ..++|+++|++. +.
T Consensus 155 ~~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~----------------g~~VLv~a~sn~Avd 215 (637)
T TIGR00376 155 DPNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKR----------------GLRVLVTAPSNIAVD 215 (637)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHc----------------CCCEEEEcCcHHHHH
Confidence 35789999999998754 22456677789999999999988877532 347999999765 67
Q ss_pred HHHHHHHH
Q 044036 213 NWEIEFSR 220 (875)
Q Consensus 213 qW~~E~~k 220 (875)
+..+.+..
T Consensus 216 ~l~e~l~~ 223 (637)
T TIGR00376 216 NLLERLAL 223 (637)
T ss_pred HHHHHHHh
Confidence 77766665
No 186
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.29 E-value=0.024 Score=69.43 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHhcC----CCCceEEEEecC
Q 044036 518 MRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRK-GYSFSRLDGSTPSNLRQSLVDDFNS----SPSKQVFLISTR 592 (875)
Q Consensus 518 l~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~-g~~~~~ldG~~~~~eR~~~i~~F~~----~~~~~v~LiSt~ 592 (875)
...+.+.|..+...+..+|||..+..+++.+...|... ++. ....|.. .|.++++.|.+ +++ -+|+.+.
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~--~VL~g~~ 593 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEG--SVLFGLQ 593 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCC--eEEEEec
Confidence 33444445444444556888888889999988888643 444 4456642 57788877764 323 2677778
Q ss_pred CcccccCCCC--CCEEEEcCCCC
Q 044036 593 AGGLGLNLVS--ANRVVIFDPNW 613 (875)
Q Consensus 593 agg~GLNL~~--An~VI~~D~~W 613 (875)
...+|+|+.+ +..||+.-.|+
T Consensus 594 sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 594 SFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccccCCCCceEEEEEEcCCC
Confidence 9999999987 78899988776
No 187
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.28 E-value=0.0056 Score=57.91 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCCC
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGPN 233 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~~ 233 (875)
++.+++.-+.|.|||..+-.++..+..... ......-+.|-||... ...+..++..-....... +..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~ 71 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAE----------IKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQT 71 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHH----------HCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhh----------ccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCC
Confidence 344567789999999999888877632100 0002233455666544 445555554433210000 111
Q ss_pred hhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhc--cccceEEeecCC
Q 044036 234 RDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL--KTRNRIGLTGTI 305 (875)
Q Consensus 234 r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l--~~~~rllLTGTP 305 (875)
.....+.+. ..+....-.+|||||||++. +......+..+ .....++|+|||
T Consensus 72 ~~~l~~~~~------------------~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 72 SDELRSLLI------------------DALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHH------------------HHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHHHH------------------HHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 121111111 11222222689999999984 24555555555 667779999998
No 188
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.22 E-value=0.028 Score=67.09 Aligned_cols=140 Identities=15% Similarity=0.176 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHH-
Q 044036 139 EHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIE- 217 (875)
Q Consensus 139 pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E- 217 (875)
+.|+.++...+. +.-++|.-..|+|||.++..++..+....+ .....++++++|+.-...=..|
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~-----------~~~~~~I~l~APTGkAA~rL~e~ 212 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSP-----------KQGKLRIALAAPTGKAAARLAES 212 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhcc-----------ccCCCcEEEECCcHHHHHHHHHH
Confidence 789999987766 567788889999999998888877653221 0012469999998765443333
Q ss_pred HHHhcC-CcEEEEeCCChhHHHHHHHhCCceEEEeecccc-ccc-------ccccccccccEEEEcCCccccCcccHHHH
Q 044036 218 FSRWST-FNVSIYHGPNRDMILEKLEACGVEVLITSFDSY-RIH-------GSILSEVNWEIVIVDEAHRLKNEKSKLYM 288 (875)
Q Consensus 218 ~~k~~~-~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l-~~~-------~~~l~~~~w~~VIiDEAH~ikn~~S~~~k 288 (875)
+..... +... . .... ...+-..|...+ ... ...-+...+++||||||-.+-. ....+
T Consensus 213 ~~~~~~~l~~~------~-~~~~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~--~l~~~ 278 (586)
T TIGR01447 213 LRKAVKNLAAA------E-ALIA-----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL--PLMAK 278 (586)
T ss_pred HHhhhcccccc------h-hhhh-----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH--HHHHH
Confidence 322111 1100 0 0000 000001111111 000 0011224679999999998843 45667
Q ss_pred HHHhccccceEEeecCCCC
Q 044036 289 ACLELKTRNRIGLTGTIMQ 307 (875)
Q Consensus 289 al~~l~~~~rllLTGTPiq 307 (875)
.+..+....|++|.|=|-|
T Consensus 279 ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 279 LLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred HHHhcCCCCEEEEECChhh
Confidence 7788888899999998754
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.20 E-value=0.014 Score=69.66 Aligned_cols=144 Identities=16% Similarity=0.167 Sum_probs=82.8
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHH
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEI 216 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~ 216 (875)
..+.|+.++.-.+. ..-+||.-..|+|||.++..++..+.... .....++++++|+.-...=..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~------------~~~~~~i~l~APTgkAA~rL~ 216 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLA------------DGERCRIRLAAPTGKAAARLT 216 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhc------------CCCCcEEEEECCcHHHHHHHH
Confidence 34789999986655 56678888999999999988888765321 112356899999876554333
Q ss_pred HHHHh-cC-CcEEE--EeC-CChhHHHHHHHhCCceEEEeecc--cccccccccccccccEEEEcCCccccCcccHHHHH
Q 044036 217 EFSRW-ST-FNVSI--YHG-PNRDMILEKLEACGVEVLITSFD--SYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMA 289 (875)
Q Consensus 217 E~~k~-~~-~~v~v--~~G-~~r~~~~~~~~~~~~~VvItTy~--~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~ka 289 (875)
|-... .. +.+.. ... ......+-.+-. .... .++.+ .-+...+++||||||-.+- ....+..
T Consensus 217 e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg-------~~~~~~~~~~~--~~~~l~~dvlIvDEaSMvd--~~lm~~l 285 (615)
T PRK10875 217 ESLGKALRQLPLTDEQKKRIPEEASTLHRLLG-------AQPGSQRLRYH--AGNPLHLDVLVVDEASMVD--LPMMARL 285 (615)
T ss_pred HHHHhhhhccccchhhhhcCCCchHHHHHHhC-------cCCCccchhhc--cccCCCCCeEEEChHhccc--HHHHHHH
Confidence 32211 00 10000 000 000000101000 0000 01111 1123467999999999983 3466777
Q ss_pred HHhccccceEEeecCCCC
Q 044036 290 CLELKTRNRIGLTGTIMQ 307 (875)
Q Consensus 290 l~~l~~~~rllLTGTPiq 307 (875)
+..+....|++|-|=|-|
T Consensus 286 l~al~~~~rlIlvGD~~Q 303 (615)
T PRK10875 286 IDALPPHARVIFLGDRDQ 303 (615)
T ss_pred HHhcccCCEEEEecchhh
Confidence 888899999999998754
No 190
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.96 E-value=0.017 Score=64.98 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=50.8
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH-HHHHHHhcCCcEEEEeCCChhHH
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW-EIEFSRWSTFNVSIYHGPNRDMI 237 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW-~~E~~k~~~~~v~v~~G~~r~~~ 237 (875)
|+--..|+|||+.++.++..+.. ......++++|+...+.+. ...+..-. ..+
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~--------------~~~~~~~~~l~~n~~l~~~l~~~l~~~~------~~~------ 58 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQN--------------SEEGKKVLYLCGNHPLRNKLREQLAKKY------NPK------ 58 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhc--------------cccCCceEEEEecchHHHHHHHHHhhhc------ccc------
Confidence 44556899999999999988711 1235567888887665554 33444321 000
Q ss_pred HHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccC
Q 044036 238 LEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 238 ~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn 281 (875)
.....+.....+.... .......+|+|||||||++..
T Consensus 59 -------~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 -------LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred -------hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0011111111111111 122234689999999999977
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.93 E-value=0.018 Score=70.55 Aligned_cols=135 Identities=21% Similarity=0.154 Sum_probs=83.4
Q ss_pred hhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHH
Q 044036 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQ 212 (875)
Q Consensus 133 i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~ 212 (875)
....|-+-|++++..+.. ..-.+|--..|+|||..+-+++..+... ....++++++|+....
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~--------------~~~~~v~l~ApTg~AA 381 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEEL--------------GGLLPVGLAAPTGRAA 381 (720)
T ss_pred cCCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHc--------------CCCceEEEEeCchHHH
Confidence 345789999999998754 4567888899999999887777665321 1125788999998777
Q ss_pred HHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHh
Q 044036 213 NWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLE 292 (875)
Q Consensus 213 qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~ 292 (875)
....|.. +.... .+...+.. ..+- ....... .....++||||||+.+-. ......+..
T Consensus 382 ~~L~e~~---g~~a~--------Tih~lL~~-~~~~------~~~~~~~--~~~~~~llIvDEaSMvd~--~~~~~Ll~~ 439 (720)
T TIGR01448 382 KRLGEVT---GLTAS--------TIHRLLGY-GPDT------FRHNHLE--DPIDCDLLIVDESSMMDT--WLALSLLAA 439 (720)
T ss_pred HHHHHhc---CCccc--------cHHHHhhc-cCCc------cchhhhh--ccccCCEEEEeccccCCH--HHHHHHHHh
Confidence 6655432 11100 01111100 0000 0000000 124568999999999944 345666777
Q ss_pred ccccceEEeecCCCC
Q 044036 293 LKTRNRIGLTGTIMQ 307 (875)
Q Consensus 293 l~~~~rllLTGTPiq 307 (875)
+....+++|-|=|-|
T Consensus 440 ~~~~~rlilvGD~~Q 454 (720)
T TIGR01448 440 LPDHARLLLVGDTDQ 454 (720)
T ss_pred CCCCCEEEEECcccc
Confidence 788889999998755
No 192
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.80 E-value=0.051 Score=65.12 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=40.2
Q ss_pred CCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHH
Q 044036 129 VPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFL 176 (875)
Q Consensus 129 vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall 176 (875)
+|-.+..+++|-|+.-+..++..+....+|+|-+++|+|||+.-|.-.
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~ 61 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCST 61 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHH
Confidence 555666678999999999999999999999999999999999855433
No 193
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.69 E-value=0.064 Score=60.48 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
..+|-|..-..-+...+..++.|+|-.+.|+|||+.-++++.++...
T Consensus 16 ~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~ 62 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLH 62 (755)
T ss_pred ccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHh
Confidence 57888977666666677788999999999999999999988876543
No 194
>PRK04296 thymidine kinase; Provisional
Probab=95.59 E-value=0.029 Score=57.13 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=18.4
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
++.-+||.|||..++.++..+.
T Consensus 6 litG~~GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNYE 27 (190)
T ss_pred EEECCCCCHHHHHHHHHHHHHH
Confidence 5667899999999999988764
No 195
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.40 E-value=0.091 Score=49.76 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=19.8
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
+...++.-+.|.|||..+-.++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4566788899999998777777665
No 196
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.17 E-value=0.008 Score=75.91 Aligned_cols=176 Identities=22% Similarity=0.331 Sum_probs=96.5
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCc--hHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLG--KTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN 213 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLG--KTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q 213 (875)
.+.+||.....-...... ....++++.|+| ||+.+..+...... .....+.++++|..+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 147 (866)
T COG0553 84 ILIPHQLDIALEVLNELA--LRVLIADEVGLGDLKTIEAGAILKELLL--------------RGEIKRVLILVPKTLRAQ 147 (866)
T ss_pred ccCcchhhhhhhhhhhhh--hchhhcccccccccccccccccchHhhh--------------hhhhccceeccchHHHHH
Confidence 455566655543332222 227889999999 89987777665432 235667899999999999
Q ss_pred HHHHHHHhcCCcEEEEeCCChhHHHHHHHh-C---CceEEEeeccccccc----ccccccccc---cEEEEcCCccccCc
Q 044036 214 WEIEFSRWSTFNVSIYHGPNRDMILEKLEA-C---GVEVLITSFDSYRIH----GSILSEVNW---EIVIVDEAHRLKNE 282 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~~G~~r~~~~~~~~~-~---~~~VvItTy~~l~~~----~~~l~~~~w---~~VIiDEAH~ikn~ 282 (875)
|..|...++.....+..-..-......... . ....++...+..... ...+....| +++++||+|.+.+.
T Consensus 148 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (866)
T COG0553 148 WVVELLEKFNIRLAVLDKEGLRYLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSS 227 (866)
T ss_pred HHHHhhhhccccchhhhhhhhhhhhhhhcccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccc
Confidence 999887764422222111100000000000 0 000022222222221 122333446 89999999999774
Q ss_pred c---------cHHHHHHHhccc--------cceEEeecCCCCCCHHHHHHHHhhhCCCCCCC
Q 044036 283 K---------SKLYMACLELKT--------RNRIGLTGTIMQNKIMELYNLFDWVAPGSLGT 327 (875)
Q Consensus 283 ~---------S~~~kal~~l~~--------~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~ 327 (875)
. ...+..+..+.. .....+++||.+....+++....+..+..+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 228 EGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred cccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 2 233333333311 12347899999988888777666666555444
No 197
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.95 E-value=0.19 Score=61.67 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=32.8
Q ss_pred cccHHHHHHHHHHHHHhhCC-----CCcEEecCCCCchHHHHHHHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNK-----HGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~-----~ggILaDemGLGKTiqaiall~~ 178 (875)
..||-|.+-+..+.+.+... .-+++=..+|+|||+.-+.-+..
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~ 72 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIP 72 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHH
Confidence 57888999888888888763 44556669999999986655443
No 198
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.72 E-value=0.13 Score=56.08 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHH-HhcCCCCCcchhhcccccCCCCcEEEEcCcchH------
Q 044036 139 EHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAA-VFGKDESSDSTILKDNKVDKKGYVLIICPSSVI------ 211 (875)
Q Consensus 139 pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~-l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl------ 211 (875)
-+|+-++.-|+. ..-.=+.|.-.-|+|||+-|+|.... .+.+ ....+++|-=|..-+
T Consensus 231 ~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~--------------~~y~KiiVtRp~vpvG~dIGf 294 (436)
T COG1875 231 AEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLER--------------KRYRKIIVTRPTVPVGEDIGF 294 (436)
T ss_pred HHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHH--------------hhhceEEEecCCcCcccccCc
Confidence 378888776654 11123347778899999988765443 2221 123334443343222
Q ss_pred ---------HHHHHHHHHhcCCcEEEEeCC---ChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccc
Q 044036 212 ---------QNWEIEFSRWSTFNVSIYHGP---NRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRL 279 (875)
Q Consensus 212 ---------~qW~~E~~k~~~~~v~v~~G~---~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~i 279 (875)
.-|..-+-.-.. .++.. ........+..+..+|--.||-.=+. +.-.+||||||+++
T Consensus 295 LPG~eEeKm~PWmq~i~DnLE----~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRS-------l~~~FiIIDEaQNL 363 (436)
T COG1875 295 LPGTEEEKMGPWMQAIFDNLE----VLFSPNEPGDRALEEILSRGRIEVEALTYIRGRS-------LPDSFIIIDEAQNL 363 (436)
T ss_pred CCCchhhhccchHHHHHhHHH----HHhcccccchHHHHHHHhccceeeeeeeeecccc-------cccceEEEehhhcc
Confidence 224333221111 11111 11122222333445555555543332 33478999999999
Q ss_pred cCcccHHHHHHHhccccceEEeecCCCC
Q 044036 280 KNEKSKLYMACLELKTRNRIGLTGTIMQ 307 (875)
Q Consensus 280 kn~~S~~~kal~~l~~~~rllLTGTPiq 307 (875)
.- ....-.+.+.-...++.|||-|-|
T Consensus 364 Tp--heikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 364 TP--HELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred CH--HHHHHHHHhccCCCEEEEcCCHHH
Confidence 43 345556677777889999998865
No 199
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=94.59 E-value=0.12 Score=64.05 Aligned_cols=108 Identities=22% Similarity=0.338 Sum_probs=77.2
Q ss_pred hCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchH-----HHHHHHHHHhcCCcEE
Q 044036 153 KNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVI-----QNWEIEFSRWSTFNVS 227 (875)
Q Consensus 153 ~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl-----~qW~~E~~k~~~~~v~ 227 (875)
..+.+.++|...|+|||+.|=..+.. ....++++-++|...+ .-|.+-|.+-.+..++
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~-----------------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~ 1219 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR-----------------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV 1219 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC-----------------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEE
Confidence 34578899999999999876443321 2357889999998665 4498888888778888
Q ss_pred EEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcc
Q 044036 228 IYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 228 v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~ 283 (875)
...|...-.. ..+. .-+|+|.|++.+.... .++ .-++.|+||.|.+....
T Consensus 1220 ~l~ge~s~~l-kl~~--~~~vii~tpe~~d~lq-~iQ--~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1220 KLTGETSLDL-KLLQ--KGQVIISTPEQWDLLQ-SIQ--QVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred ecCCccccch-HHhh--hcceEEechhHHHHHh-hhh--hcceEeeehhhhhcccC
Confidence 8888754322 2222 2379999999886553 222 45899999999997643
No 200
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.34 E-value=0.56 Score=50.29 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=31.8
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCC-cEEecCCCCchHHHHHHHHHHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHG-GILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~g-gILaDemGLGKTiqaiall~~l 179 (875)
....-+.+..++..+......+.| .+|.-+.|+|||..+-.++..+
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 334555667777777665555544 4678899999998888776554
No 201
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=93.85 E-value=0.16 Score=52.64 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=58.3
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN 213 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q 213 (875)
+..+||-|.+.+..|.+. ..+.+.++-.-||-|||-..+-++++++..+ ..=+-+|+|++|+.+
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg---------------~~LvrviVpk~Ll~q 84 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADG---------------SRLVRVIVPKALLEQ 84 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCC---------------CcEEEEEcCHHHHHH
Confidence 458999999999998863 4567889999999999998888888776432 345789999999999
Q ss_pred HHHHHHHhc
Q 044036 214 WEIEFSRWS 222 (875)
Q Consensus 214 W~~E~~k~~ 222 (875)
-.+-+..-.
T Consensus 85 ~~~~L~~~l 93 (229)
T PF12340_consen 85 MRQMLRSRL 93 (229)
T ss_pred HHHHHHHHH
Confidence 877776543
No 202
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.71 E-value=0.39 Score=58.45 Aligned_cols=144 Identities=19% Similarity=0.229 Sum_probs=87.7
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~q 213 (875)
..|-.-|+.|+...+.. ...--|++. +|+|||-+..+++..++. ..+++|+.+=++ .++|
T Consensus 668 ~~LN~dQr~A~~k~L~a--edy~LI~GM-PGTGKTTtI~~LIkiL~~----------------~gkkVLLtsyThsAVDN 728 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAA--EDYALILGM-PGTGKTTTISLLIKILVA----------------LGKKVLLTSYTHSAVDN 728 (1100)
T ss_pred hhcCHHHHHHHHHHHhc--cchheeecC-CCCCchhhHHHHHHHHHH----------------cCCeEEEEehhhHHHHH
Confidence 48999999999877653 234446664 599999988888887753 466789888864 5898
Q ss_pred HHHHHHHhcCCcEEEE-eCCC-------h---------hHHHHHHH--hCCceEEEeecccccccccccccccccEEEEc
Q 044036 214 WEIEFSRWSTFNVSIY-HGPN-------R---------DMILEKLE--ACGVEVLITSFDSYRIHGSILSEVNWEIVIVD 274 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~-~G~~-------r---------~~~~~~~~--~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiD 274 (875)
-.--+..+.- .+. -|.. + ......++ -....||.+|-- ......+....||++|||
T Consensus 729 ILiKL~~~~i---~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TCl--gi~~plf~~R~FD~cIiD 803 (1100)
T KOG1805|consen 729 ILIKLKGFGI---YILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCL--GINHPLFVNRQFDYCIID 803 (1100)
T ss_pred HHHHHhccCc---ceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEcc--CCCchhhhccccCEEEEc
Confidence 8776665522 111 1111 0 01111111 123345555532 223445666789999999
Q ss_pred CCccccCcccHHHHHHHhccccceEEeecCCCC
Q 044036 275 EAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQ 307 (875)
Q Consensus 275 EAH~ikn~~S~~~kal~~l~~~~rllLTGTPiq 307 (875)
||-.|--+ -++--|....++.|-|-+.|
T Consensus 804 EASQI~lP-----~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 804 EASQILLP-----LCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred cccccccc-----hhhhhhhhcceEEEeccccc
Confidence 99887443 23333455667777776644
No 203
>PLN03025 replication factor C subunit; Provisional
Probab=93.52 E-value=1.8 Score=47.89 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhCC--CCcEEecCCCCchHHHHHHHHHHHhc
Q 044036 141 QREGVKFLYKLYKNK--HGGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~--~ggILaDemGLGKTiqaiall~~l~~ 181 (875)
|.+.+..+......+ ...||.-+.|+|||..+.+++..++.
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 444555554433333 34588999999999999999888753
No 204
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.37 E-value=0.8 Score=51.86 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=36.5
Q ss_pred cccEEEEcCCccccCccc---HHHHHHHhccc--cceEEeecCCCCCCHHHHHHHHhhhCC
Q 044036 267 NWEIVIVDEAHRLKNEKS---KLYMACLELKT--RNRIGLTGTIMQNKIMELYNLFDWVAP 322 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S---~~~kal~~l~~--~~rllLTGTPiqN~~~El~~Ll~~l~p 322 (875)
+.++||||++.+...... .....+..... ...|.|+||-=++.+.+.+.-+..+.+
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 579999999998754322 22333333332 456899999888888877766654444
No 205
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.31 E-value=0.48 Score=57.26 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...++.|.+.+..++ .-||.-..|+|||..+..|...+...
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 6666666666665543 33788899999999999999888654
No 206
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.24 E-value=0.46 Score=54.92 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhCCCC---cEEecCCCCchHHHHHHHHHHHhc
Q 044036 141 QREGVKFLYKLYKNKHG---GILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~g---gILaDemGLGKTiqaiall~~l~~ 181 (875)
|...+..|...+..++- -|+.-+.|.|||..|..++..+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 66666666555555542 388999999999999999988754
No 207
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=93.24 E-value=0.57 Score=45.22 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=36.9
Q ss_pred EEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCC--CCEEEEcCCCC
Q 044036 560 SRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVS--ANRVVIFDPNW 613 (875)
Q Consensus 560 ~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~--An~VI~~D~~W 613 (875)
..+.|. ...+..++++.|...... .+|+++....+|+|+.+ +..||+.-.|+
T Consensus 26 i~~e~~-~~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQGE-DGKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeCC-ChhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344443 334578899999875432 46777777999999997 67888887665
No 208
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.94 E-value=0.22 Score=53.39 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=19.7
Q ss_pred CcEEecCCCCchHHHHHHHHHHHh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.+|.-+.|+|||..|-++...+.
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999988877653
No 209
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.90 E-value=0.22 Score=46.49 Aligned_cols=44 Identities=18% Similarity=0.091 Sum_probs=30.4
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWE 215 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~ 215 (875)
...+|.-++|+|||..+..++..+... ...++++.+......|.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~ 46 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP----------------GGGVIYIDGEDILEEVL 46 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC----------------CCCEEEECCEEccccCH
Confidence 345678889999999998888766311 13577787776555443
No 210
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.61 E-value=0.47 Score=51.60 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=20.4
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHh
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.+.+|.-++|+|||..|-++...+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567888999999999988877664
No 211
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.24 E-value=1.6 Score=52.18 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...++.|...+..+ +..|+.-..|.|||..|.+++..+...
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 555556555555554 344889999999999999998887543
No 212
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.17 E-value=0.63 Score=45.01 Aligned_cols=53 Identities=11% Similarity=0.297 Sum_probs=34.9
Q ss_pred EEEeCCCCHHHHHHHHHHhcCCCCc-eEEEEecCC--cccccCCCC--CCEEEEcCCCC
Q 044036 560 SRLDGSTPSNLRQSLVDDFNSSPSK-QVFLISTRA--GGLGLNLVS--ANRVVIFDPNW 613 (875)
Q Consensus 560 ~~ldG~~~~~eR~~~i~~F~~~~~~-~v~LiSt~a--gg~GLNL~~--An~VI~~D~~W 613 (875)
..+.+..+ .+..+++++|+..... .-+|+++.. .+||+|+.+ +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44455433 3457889999864330 125555544 799999997 67888887775
No 213
>PHA02533 17 large terminase protein; Provisional
Probab=92.12 E-value=1.5 Score=51.95 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=76.6
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH-
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN- 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q- 213 (875)
..|.|+|++-+..|.. ++-.++.-.=..|||..+.+++.+.... .....+++++|..--..
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~--------------~~~~~v~i~A~~~~QA~~ 119 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCF--------------NKDKNVGILAHKASMAAE 119 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHH
Confidence 4688999998887642 3334666677899999987665443211 12347889999422111
Q ss_pred HHHHHHHh---cC--CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHH
Q 044036 214 WEIEFSRW---ST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYM 288 (875)
Q Consensus 214 W~~E~~k~---~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~k 288 (875)
--+.++.. .| ....+.. .++..+ .+ ..+..|.+.+ ...+.......+++|+||+|.+++.. ....
T Consensus 120 vF~~ik~~ie~~P~l~~~~i~~-~~~~~I--~l-~NGS~I~~ls-----s~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ 189 (534)
T PHA02533 120 VLDRTKQAIELLPDFLQPGIVE-WNKGSI--EL-ENGSKIGAYA-----SSPDAVRGNSFAMIYIDECAFIPNFI-DFWL 189 (534)
T ss_pred HHHHHHHHHHhCHHHhhcceee-cCccEE--Ee-CCCCEEEEEe-----CCCCccCCCCCceEEEeccccCCCHH-HHHH
Confidence 11222211 11 1111100 000000 00 1122222222 12234556677899999999997743 3333
Q ss_pred HHHhc-c--ccceEEeecCCC-CCCHHHHHH
Q 044036 289 ACLEL-K--TRNRIGLTGTIM-QNKIMELYN 315 (875)
Q Consensus 289 al~~l-~--~~~rllLTGTPi-qN~~~El~~ 315 (875)
++... . ...++.+..||- .|...++|.
T Consensus 190 ai~p~lasg~~~r~iiiSTp~G~n~fye~~~ 220 (534)
T PHA02533 190 AIQPVISSGRSSKIIITSTPNGLNHFYDIWT 220 (534)
T ss_pred HHHHHHHcCCCceEEEEECCCchhhHHHHHH
Confidence 33222 2 224677888884 233444443
No 214
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.05 E-value=0.87 Score=54.82 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhCCC--C-cEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH--G-GILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~--g-gILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..|.+.+..++ . -|+.-+.|.|||..+-.|+..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 5555566655555543 2 3788899999999999999888653
No 215
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=91.79 E-value=0.68 Score=57.20 Aligned_cols=127 Identities=17% Similarity=0.067 Sum_probs=74.2
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW 214 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW 214 (875)
..|-+-|++++..+.. ...-.+|--..|+|||.++-+++..+.. ...+++.++|+.....=
T Consensus 351 ~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~----------------~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEA----------------AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHh----------------CCCeEEEEeCcHHHHHH
Confidence 4688999999988754 2344578888999999887776655421 24568999998765442
Q ss_pred HHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhc-
Q 044036 215 EIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL- 293 (875)
Q Consensus 215 ~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l- 293 (875)
..+- .+.....++ ..... +..... .....++||||||..+... .....+...
T Consensus 412 L~~~---~g~~a~Ti~-----~~~~~---------------~~~~~~--~~~~~~llIvDEasMv~~~--~~~~Ll~~~~ 464 (744)
T TIGR02768 412 LQAE---SGIESRTLA-----SLEYA---------------WANGRD--LLSDKDVLVIDEAGMVGSR--QMARVLKEAE 464 (744)
T ss_pred HHhc---cCCceeeHH-----HHHhh---------------hccCcc--cCCCCcEEEEECcccCCHH--HHHHHHHHHH
Confidence 2221 111111000 00000 000011 1236799999999998543 334444422
Q ss_pred cccceEEeecCCCC
Q 044036 294 KTRNRIGLTGTIMQ 307 (875)
Q Consensus 294 ~~~~rllLTGTPiq 307 (875)
....+++|.|=|-|
T Consensus 465 ~~~~kliLVGD~~Q 478 (744)
T TIGR02768 465 EAGAKVVLVGDPEQ 478 (744)
T ss_pred hcCCEEEEECChHH
Confidence 46788999886543
No 216
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.73 E-value=2.2 Score=42.17 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhCCC--C-cEEecCCCCchHHHHHHHHHHHhcCCC
Q 044036 141 QREGVKFLYKLYKNKH--G-GILGDDMGLGKTIQTIAFLAAVFGKDE 184 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~--g-gILaDemGLGKTiqaiall~~l~~~~~ 184 (875)
|.+.+..+.+.+..++ . -|+.-+.|.||+-.|.+|+..++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 6677777777776653 3 377888999999999999999987654
No 217
>PRK06526 transposase; Provisional
Probab=91.69 E-value=0.43 Score=50.91 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 142 REGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 142 ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.+..|+- .+.+.+|.-..|+|||..+.++...+.
T Consensus 89 l~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 89 LGTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred HhcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 34445653 367788888999999999999987764
No 218
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.67 E-value=1.3 Score=49.67 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|.+++..+...+..++ .-++.-+.|+|||..+..++..++..
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 6677788888777776 35789999999999999999988763
No 219
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.54 E-value=0.12 Score=59.42 Aligned_cols=104 Identities=17% Similarity=0.282 Sum_probs=55.8
Q ss_pred cCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchHHHHHHHHHHhcC----CcEEEEeCCChhH
Q 044036 162 DDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVIQNWEIEFSRWST----FNVSIYHGPNRDM 236 (875)
Q Consensus 162 DemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl~qW~~E~~k~~~----~~v~v~~G~~r~~ 236 (875)
..+|+|||+++.+++.+++.++ ...+|..|- ++++..-..-|..-.. +.-.+..++....
T Consensus 4 matgsgkt~~ma~lil~~y~kg---------------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ 68 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKG---------------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIE 68 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhc---------------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceee
Confidence 4689999999999999998654 344666555 6777655444322111 1111222221110
Q ss_pred H--HHHH--HhCCceEEEeecccccccc-------cccccc--cccEEEEcCCcccc
Q 044036 237 I--LEKL--EACGVEVLITSFDSYRIHG-------SILSEV--NWEIVIVDEAHRLK 280 (875)
Q Consensus 237 ~--~~~~--~~~~~~VvItTy~~l~~~~-------~~l~~~--~w~~VIiDEAH~ik 280 (875)
+ ...+ ...+.+|+.||.+.+-.+. -.+... .--+++.||||++.
T Consensus 69 ikkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 69 IKKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred eeeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 0 0000 1235678888877654321 111111 12367889999994
No 220
>CHL00181 cbbX CbbX; Provisional
Probab=91.52 E-value=0.85 Score=49.66 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=29.5
Q ss_pred cEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH
Q 044036 158 GILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW 214 (875)
Q Consensus 158 gILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW 214 (875)
.+|.-++|+|||..|-++...+...+ ....++++.|....++..|
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g------------~~~~~~~~~v~~~~l~~~~ 106 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLG------------YIKKGHLLTVTRDDLVGQY 106 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC------------CCCCCceEEecHHHHHHHH
Confidence 57888999999999999877664322 2234555555545555444
No 221
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=91.49 E-value=2.4 Score=48.55 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=92.6
Q ss_pred hHHHHHH-HHHHhh--cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 517 KMRALEK-LMYSWA--SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 517 Kl~~L~~-LL~~~~--~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
+++...+ +|..+. ....++|||..+--..-.|.++|+..++.|+.++=-++..+-..+-..|..+. ..++|+|-++
T Consensus 282 Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~-~~iLL~TER~ 360 (442)
T PF06862_consen 282 RFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR-KPILLYTERF 360 (442)
T ss_pred HHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC-ceEEEEEhHH
Confidence 4444433 444444 35578999998877777899999999999999999999999999999999874 4677777554
Q ss_pred -cccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCC----cceEEEEEEeeC
Q 044036 594 -GGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ----KRHVIVFRLLSA 642 (875)
Q Consensus 594 -gg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ----~k~V~VyrLi~~ 642 (875)
-=.=..+.++.+||+|.||-+|.-|...+.-...-.+ ..+..|.-|.++
T Consensus 361 HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 361 HFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred hhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 2234567889999999999999999988765554333 234555555553
No 222
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.20 E-value=1.4 Score=48.67 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=40.7
Q ss_pred hcccHHHHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 135 CRLLEHQREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
..++|+|....+.+...+..++ .-++.-..|+||+..|.+|+..++...
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 3578999999998888877654 456888999999999999999998754
No 223
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.20 E-value=0.77 Score=50.94 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
++|+|....+-+...-+-.+.-++.-+.|.|||..|.+|+..++...
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 47888877777776522233446788999999999999999998654
No 224
>PRK08181 transposase; Validated
Probab=90.67 E-value=1.5 Score=47.17 Aligned_cols=43 Identities=16% Similarity=-0.031 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 138 LEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
-.-|..++..+-.....+.+.+|.-+.|+|||..+.++...+.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~ 131 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALI 131 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 3446666654433334577888999999999999999887764
No 225
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.56 E-value=2.5 Score=47.69 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhc
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~ 181 (875)
|...+..+.+.+..++ ..++.-+.|+|||..|-+++..+..
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 6666776666665542 3478999999999999999988764
No 226
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=90.42 E-value=2.4 Score=52.73 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..|...+..+ +.-||.-..|+|||..+..|...++..
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 444444444444333 334789999999999999999988754
No 227
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.33 E-value=1.5 Score=45.98 Aligned_cols=134 Identities=18% Similarity=0.209 Sum_probs=66.4
Q ss_pred hhhhcccHHHHHHHHHHHHHhhCCCCc-EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch
Q 044036 132 SINCRLLEHQREGVKFLYKLYKNKHGG-ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV 210 (875)
Q Consensus 132 ~i~~~L~pyQ~~gv~~l~~~~~~~~gg-ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL 210 (875)
.+..+.-+|+.. +.-+......++|. .+.-++|+|||+..=+++..+- ....++|+.|+..
T Consensus 28 ~~~~~~a~h~e~-l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~-----------------~d~~~~v~i~~~~ 89 (269)
T COG3267 28 GLDYWAADHNEA-LLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLN-----------------EDQVAVVVIDKPT 89 (269)
T ss_pred hhhhhhhhhhHH-HHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcC-----------------CCceEEEEecCcc
Confidence 333445555544 33343334444433 4678999999999885554431 1223446667543
Q ss_pred ------HHHHHHHHHHhcCCcEEEE-eCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcc
Q 044036 211 ------IQNWEIEFSRWSTFNVSIY-HGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 211 ------l~qW~~E~~k~~~~~v~v~-~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~ 283 (875)
+.-|..++.. -| .+.+- .....+..+..+... ....-.+++||||.+..+.
T Consensus 90 ~s~~~~~~ai~~~l~~-~p-~~~~~~~~e~~~~~L~al~~~--------------------g~r~v~l~vdEah~L~~~~ 147 (269)
T COG3267 90 LSDATLLEAIVADLES-QP-KVNVNAVLEQIDRELAALVKK--------------------GKRPVVLMVDEAHDLNDSA 147 (269)
T ss_pred hhHHHHHHHHHHHhcc-Cc-cchhHHHHHHHHHHHHHHHHh--------------------CCCCeEEeehhHhhhChhH
Confidence 3447777664 11 00000 000011111111111 1234679999999986544
Q ss_pred cHHHHHHHhc----cccceEEeecCC
Q 044036 284 SKLYMACLEL----KTRNRIGLTGTI 305 (875)
Q Consensus 284 S~~~kal~~l----~~~~rllLTGTP 305 (875)
=..-+.+.++ ...-+++|-|-|
T Consensus 148 le~Lrll~nl~~~~~~~l~ivL~Gqp 173 (269)
T COG3267 148 LEALRLLTNLEEDSSKLLSIVLIGQP 173 (269)
T ss_pred HHHHHHHHhhcccccCceeeeecCCc
Confidence 3333444443 334457777777
No 228
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.03 E-value=2.8 Score=48.26 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=34.6
Q ss_pred cccEEEEcCCccccCcccH---HHHHHHhc--cccceEEeecCCCCCCHHHHHHHHhhhCC
Q 044036 267 NWEIVIVDEAHRLKNEKSK---LYMACLEL--KTRNRIGLTGTIMQNKIMELYNLFDWVAP 322 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S~---~~kal~~l--~~~~rllLTGTPiqN~~~El~~Ll~~l~p 322 (875)
++++||||-+-+....... +...+... .....++|++|+-.+.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4699999998765332222 22222211 22446899999877777777777665554
No 229
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.86 E-value=3.5 Score=49.44 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...++.|.+.+..+ +.-||.-..|+|||..+..|...+...
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444455554444444 334788899999999999999988753
No 230
>PRK08116 hypothetical protein; Validated
Probab=89.83 E-value=2.3 Score=45.83 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.3
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.|.+|.-++|+|||..+.+++..+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678888999999999999988875
No 231
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.71 E-value=1.4 Score=48.91 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhCCC--CcEEecCCCCchHHHHHHHHHHHh
Q 044036 141 QREGVKFLYKLYKNKH--GGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~--ggILaDemGLGKTiqaiall~~l~ 180 (875)
|...+.++......+. ..++.-+.|+|||..+.+++..+.
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4445666655555554 568899999999999999988775
No 232
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.48 E-value=4.5 Score=46.29 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..|...+..+ +.-|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 555555555555544 345688999999999999999988754
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=89.44 E-value=2.9 Score=44.67 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=40.2
Q ss_pred HhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHH
Q 044036 151 LYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFS 219 (875)
Q Consensus 151 ~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~ 219 (875)
.+..+.|.+|--.+|.|||..++|+...+. + ...+++++.=+.++.+++..+.
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~---------------~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIAIGNELL-K---------------AGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHHHHHHHH-H---------------cCCeEEEEEHHHHHHHHHHHHh
Confidence 334677888888999999999999999885 2 2455777776777777766554
No 234
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.41 E-value=5.3 Score=49.59 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhCC--CCc-EEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK--HGG-ILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~--~gg-ILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..|.+.+..+ ... |+.-+.|.|||..+-.|+..+...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 445555444444433 244 788999999999999999888643
No 235
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.97 E-value=1.7 Score=45.08 Aligned_cols=26 Identities=27% Similarity=0.010 Sum_probs=20.6
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
....+|.-+.|+|||..+.++.....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566778999999999988887653
No 236
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.93 E-value=6.9 Score=46.23 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhCC--CCc-EEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK--HGG-ILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~--~gg-ILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..|.+.+..+ ..+ |+.-+.|.|||..|-.++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 556666666655444 233 788899999999999999888654
No 237
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.91 E-value=7.3 Score=46.03 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhCCCCc---EEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKHGG---ILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~gg---ILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..|...+..++-. |+.-+.|.|||-.+-+++.++...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 555555555555555322 788999999999999999988654
No 238
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.88 E-value=3 Score=49.28 Aligned_cols=96 Identities=11% Similarity=0.113 Sum_probs=73.2
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR-KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~-~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
+..|||..+...++......|.++||.+........+...|.. .|..+..++|.++..+|.+...+-.++... |+|.
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~--IVVG 82 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL--VVIG 82 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC--EEEC
Confidence 5678999999888888888899999999999888877777765 478899999999999998887776665433 5666
Q ss_pred cCCcccccCCCCCCEEEEcC
Q 044036 591 TRAGGLGLNLVSANRVVIFD 610 (875)
Q Consensus 591 t~agg~GLNL~~An~VI~~D 610 (875)
|+..- =+-+.....||+=+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 66432 23455566666654
No 239
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.72 E-value=4.8 Score=48.69 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...++.|...+..++ +-||.-..|+|||..+..|+..+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 5555665555555443 44888999999999999999887644
No 240
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.66 E-value=4.4 Score=44.62 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=25.3
Q ss_pred cccEEEEcCCccccCcc--cHHHHHHHhccccceEEeecCCC
Q 044036 267 NWEIVIVDEAHRLKNEK--SKLYMACLELKTRNRIGLTGTIM 306 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~--S~~~kal~~l~~~~rllLTGTPi 306 (875)
..++|||||+|.+.... ......+.......++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 35789999999983322 12233344446667888887643
No 241
>PF13245 AAA_19: Part of AAA domain
Probab=88.60 E-value=1.4 Score=37.63 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=32.2
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN 213 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q 213 (875)
-.++--..|+|||.+++..+..++... ... ..++||++|.....+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~-----------~~~-~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAAR-----------ADP-GKRVLVLAPTRAAAD 56 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHh-----------cCC-CCeEEEECCCHHHHH
Confidence 345578999999999998888876311 012 678999999865433
No 242
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.57 E-value=3.4 Score=46.72 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=51.0
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcC--CcEEEEeCCCh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST--FNVSIYHGPNR 234 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~--~~v~v~~G~~r 234 (875)
-.+|+-++|.|||..++.++..+.. ..+++|.|.-..-..|......++.. .++.++..
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~----------------~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e--- 144 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAK----------------RGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAE--- 144 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh----------------cCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEcc---
Confidence 3467889999999999998876632 23578888765445555444444321 12222211
Q ss_pred hHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCcccc
Q 044036 235 DMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLK 280 (875)
Q Consensus 235 ~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ik 280 (875)
..+......+...+.++||||+.+.+.
T Consensus 145 -------------------~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 -------------------TNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred -------------------CcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 111111222334578999999999874
No 243
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=88.52 E-value=5.6 Score=49.07 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=35.4
Q ss_pred ccCCchhhhcccHHHHHHHHHHHHHhhC--CC-CcE-EecCCCCchHHHHHHHHHHHh
Q 044036 127 IQVPASINCRLLEHQREGVKFLYKLYKN--KH-GGI-LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 127 ~~vP~~i~~~L~pyQ~~gv~~l~~~~~~--~~-ggI-LaDemGLGKTiqaiall~~l~ 180 (875)
-++|..| .=|+-|.+.+...+.-... +. ++| +.-.+|+|||.++-.++..+-
T Consensus 751 DYVPD~L--PhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 751 DVVPKYL--PCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred ccCCCcC--CChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566655 3577788777665554322 22 343 788999999999999887663
No 244
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.29 E-value=3.8 Score=46.26 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=61.6
Q ss_pred EecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-c---chHHHHHHHHHHhcCCcEEEEeCCChh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-S---SVIQNWEIEFSRWSTFNVSIYHGPNRD 235 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~---sLl~qW~~E~~k~~~~~v~v~~G~~r~ 235 (875)
|.-..|.|||..+..++..+.. ...++++|.- + ..+.||..-... .+..+.+ ..+..
T Consensus 246 LVGptGvGKTTTiaKLA~~L~~----------------~GkkVglI~aDt~RiaAvEQLk~yae~-lgipv~v--~~d~~ 306 (436)
T PRK11889 246 LIGPTGVGKTTTLAKMAWQFHG----------------KKKTVGFITTDHSRIGTVQQLQDYVKT-IGFEVIA--VRDEA 306 (436)
T ss_pred EECCCCCcHHHHHHHHHHHHHH----------------cCCcEEEEecCCcchHHHHHHHHHhhh-cCCcEEe--cCCHH
Confidence 5566999999998888776632 2345655554 2 345666532111 1122221 11111
Q ss_pred HHHHHHHhCCceEEEeeccccccccccccc-ccccEEEEcCCccccCcccH---HHHHHHhcccc-ceEEeecCCCCCCH
Q 044036 236 MILEKLEACGVEVLITSFDSYRIHGSILSE-VNWEIVIVDEAHRLKNEKSK---LYMACLELKTR-NRIGLTGTIMQNKI 310 (875)
Q Consensus 236 ~~~~~~~~~~~~VvItTy~~l~~~~~~l~~-~~w~~VIiDEAH~ikn~~S~---~~kal~~l~~~-~rllLTGTPiqN~~ 310 (875)
.+......+.. .++|+||||-+=+..+.... +.+.+...... ..|.|+||--.+..
T Consensus 307 -------------------~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 307 -------------------AMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred -------------------HHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 11111111221 24789999998765433222 22222222222 33567787666665
Q ss_pred HHHHHHHhhhC
Q 044036 311 MELYNLFDWVA 321 (875)
Q Consensus 311 ~El~~Ll~~l~ 321 (875)
.++...++-+.
T Consensus 368 ~~i~~~F~~~~ 378 (436)
T PRK11889 368 IEIITNFKDIH 378 (436)
T ss_pred HHHHHHhcCCC
Confidence 66555555443
No 245
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.22 E-value=3.9 Score=43.36 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHh---hCC-CCcEEecCCCCchHHHHHHHHHHHh
Q 044036 140 HQREGVKFLYKLY---KNK-HGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 140 yQ~~gv~~l~~~~---~~~-~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.|..++..+.... ..+ .+.+|.-..|+|||..+.+++..+.
T Consensus 80 ~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 80 GQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3555555544322 222 3567899999999999999998875
No 246
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.99 E-value=16 Score=40.02 Aligned_cols=40 Identities=28% Similarity=0.309 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhCC--CCcEEecCCCCchHHHHHHHHHHHh
Q 044036 141 QREGVKFLYKLYKNK--HGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~--~ggILaDemGLGKTiqaiall~~l~ 180 (875)
|.+.+..+......+ ...+|.-+.|.|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 444555555544443 2468899999999999988887764
No 247
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=87.61 E-value=2.6 Score=53.71 Aligned_cols=129 Identities=14% Similarity=0.066 Sum_probs=75.1
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW 214 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW 214 (875)
..|-+-|+++|..+. ....-++|--.-|+|||.+.-++...+- ....+++.++|+.-...=
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e----------------~~G~~V~g~ApTgkAA~~ 440 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWE----------------AAGYRVVGGALAGKAAEG 440 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHH----------------HcCCeEEEEcCcHHHHHH
Confidence 368999999998764 2233456666789999988777665542 134578889998654432
Q ss_pred HHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhc-
Q 044036 215 EIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL- 293 (875)
Q Consensus 215 ~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l- 293 (875)
+..-++.....++. .+-.+.. ....+ -.-++||||||..+.. ......+...
T Consensus 441 ---L~e~~Gi~a~TIas-----~ll~~~~---------------~~~~l--~~~~vlVIDEAsMv~~--~~m~~Ll~~~~ 493 (1102)
T PRK13826 441 ---LEKEAGIQSRTLSS-----WELRWNQ---------------GRDQL--DNKTVFVLDEAGMVAS--RQMALFVEAVT 493 (1102)
T ss_pred ---HHHhhCCCeeeHHH-----HHhhhcc---------------CccCC--CCCcEEEEECcccCCH--HHHHHHHHHHH
Confidence 22222211111110 0000000 00111 1347999999999843 3444555555
Q ss_pred cccceEEeecCCCCCC
Q 044036 294 KTRNRIGLTGTIMQNK 309 (875)
Q Consensus 294 ~~~~rllLTGTPiqN~ 309 (875)
....+++|.|=|-|-.
T Consensus 494 ~~garvVLVGD~~QL~ 509 (1102)
T PRK13826 494 RAGAKLVLVGDPEQLQ 509 (1102)
T ss_pred hcCCEEEEECCHHHcC
Confidence 4678999999886654
No 248
>PRK14974 cell division protein FtsY; Provisional
Probab=87.57 E-value=5.2 Score=44.47 Aligned_cols=113 Identities=15% Similarity=0.104 Sum_probs=57.5
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc----chHHHHHHHHHHhcCCcEE-EEeCCC
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS----SVIQNWEIEFSRWSTFNVS-IYHGPN 233 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~----sLl~qW~~E~~k~~~~~v~-v~~G~~ 233 (875)
++.-..|.|||.++..++..+.. ...++++++.- ..+.||...... .+..+. ...|..
T Consensus 144 ~~~G~~GvGKTTtiakLA~~l~~----------------~g~~V~li~~Dt~R~~a~eqL~~~a~~-lgv~v~~~~~g~d 206 (336)
T PRK14974 144 VFVGVNGTGKTTTIAKLAYYLKK----------------NGFSVVIAAGDTFRAGAIEQLEEHAER-LGVKVIKHKYGAD 206 (336)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH----------------cCCeEEEecCCcCcHHHHHHHHHHHHH-cCCceecccCCCC
Confidence 35669999999988877766532 23456666643 345666543333 222222 122222
Q ss_pred hhHH-HHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHh----cccc-ceEEeecCCCC
Q 044036 234 RDMI-LEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLE----LKTR-NRIGLTGTIMQ 307 (875)
Q Consensus 234 r~~~-~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~----l~~~-~rllLTGTPiq 307 (875)
.... ...+. .....+.++||||.|+++.+.... ...+.. +... ..+.+++|.-+
T Consensus 207 p~~v~~~ai~-------------------~~~~~~~DvVLIDTaGr~~~~~~l-m~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 207 PAAVAYDAIE-------------------HAKARGIDVVLIDTAGRMHTDANL-MDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HHHHHHHHHH-------------------HHHhCCCCEEEEECCCccCCcHHH-HHHHHHHHHhhCCceEEEeeccccch
Confidence 1111 11110 111234689999999998654322 222222 2333 34677777644
Q ss_pred C
Q 044036 308 N 308 (875)
Q Consensus 308 N 308 (875)
+
T Consensus 267 d 267 (336)
T PRK14974 267 D 267 (336)
T ss_pred h
Confidence 3
No 249
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=87.51 E-value=0.51 Score=48.51 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhc
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~ 181 (875)
-+-|++-.+|.|||..+..++..+++
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhC
Confidence 46689999999999999999998875
No 250
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=87.47 E-value=4.2 Score=45.86 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
|.+++..+.+.+..++ .-|+.-+.|+|||..|.+|+..++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 7777777777776653 456888999999999999999998764
No 251
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=87.42 E-value=1.9 Score=54.42 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=72.9
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWE 215 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~ 215 (875)
.|-+-|+++|..+.. ...-++|--..|+|||.+.-++...+ .. ....++.++|+.....=.
T Consensus 346 ~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~~~~~-e~---------------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVAREAW-EA---------------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHH-HH---------------cCCeEEEecCcHHHHHHH
Confidence 589999999997764 12235677778999998755444433 21 245688999987654332
Q ss_pred HHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhc-c
Q 044036 216 IEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL-K 294 (875)
Q Consensus 216 ~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l-~ 294 (875)
.+- . |.... .+..+.. + +..... .....++||||||-.+... ...+.+... .
T Consensus 407 ~e~---t--------Gi~a~-TI~sll~-~----------~~~~~~--~l~~~~vlIVDEASMv~~~--~m~~LL~~a~~ 459 (988)
T PRK13889 407 EGG---S--------GIASR-TIASLEH-G----------WGQGRD--LLTSRDVLVIDEAGMVGTR--QLERVLSHAAD 459 (988)
T ss_pred hhc---c--------Ccchh-hHHHHHh-h----------hccccc--ccccCcEEEEECcccCCHH--HHHHHHHhhhh
Confidence 221 1 11100 1111100 0 000001 1124589999999988543 444445433 5
Q ss_pred ccceEEeecCCCCCC
Q 044036 295 TRNRIGLTGTIMQNK 309 (875)
Q Consensus 295 ~~~rllLTGTPiqN~ 309 (875)
...+++|.|=|-|-.
T Consensus 460 ~garvVLVGD~~QLp 474 (988)
T PRK13889 460 AGAKVVLVGDPQQLQ 474 (988)
T ss_pred CCCEEEEECCHHHcC
Confidence 678999999876543
No 252
>PRK08727 hypothetical protein; Validated
Probab=87.16 E-value=2.6 Score=44.37 Aligned_cols=24 Identities=33% Similarity=0.212 Sum_probs=19.8
Q ss_pred CcEEecCCCCchHHHHHHHHHHHh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~ 180 (875)
..+|.-+.|+|||..+.++...+.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 357888999999998888877764
No 253
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=87.16 E-value=3.9 Score=48.10 Aligned_cols=42 Identities=31% Similarity=0.185 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..+...+..+ +..||.-+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 666666665555544 366889999999999999999888643
No 254
>PRK04195 replication factor C large subunit; Provisional
Probab=86.81 E-value=10 Score=44.61 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=20.5
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
....+|.-+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4577899999999999888877654
No 255
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=86.80 E-value=2.1 Score=42.90 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=35.0
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW 221 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~ 221 (875)
++.-+.|+|||..++.++..... ...+++++.......+..+.+..+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~----------------~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLA----------------RGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH----------------CCCcEEEEECCCCHHHHHHHHHHc
Confidence 57788999999999999887642 356788998766666665555544
No 256
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=86.65 E-value=2.3 Score=43.51 Aligned_cols=129 Identities=17% Similarity=0.217 Sum_probs=65.7
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcC-CcEEEEeCCCh---
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNR--- 234 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~-~~v~v~~G~~r--- 234 (875)
+|.-.+|.|||-++.-+++++.. . ..++.+||--.--.-=.++++.|.. +.+-++.-...
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~---------------~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~ 68 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKL---------------K-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDP 68 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHH---------------T-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCH
T ss_pred EEECCCCCchHhHHHHHHHHHhh---------------c-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhh
Confidence 45668999999998888777642 1 4456666653322222334444443 33333322211
Q ss_pred hHHH-HHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCccc---HHHHHHHhc-cccceEEeecCCCCCC
Q 044036 235 DMIL-EKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKS---KLYMACLEL-KTRNRIGLTGTIMQNK 309 (875)
Q Consensus 235 ~~~~-~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S---~~~kal~~l-~~~~rllLTGTPiqN~ 309 (875)
.... +.+ ..+..-+.|+|+||-+.+..+... .+.+.+..+ .....+.|++|--+..
T Consensus 69 ~~~~~~~l-------------------~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 69 AEIAREAL-------------------EKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp HHHHHHHH-------------------HHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred HHHHHHHH-------------------HHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 1111 111 112223468899999877644322 222222233 3455688899876666
Q ss_pred HHHHHHHHhhhCC
Q 044036 310 IMELYNLFDWVAP 322 (875)
Q Consensus 310 ~~El~~Ll~~l~p 322 (875)
+..+......+.+
T Consensus 130 ~~~~~~~~~~~~~ 142 (196)
T PF00448_consen 130 LEQALAFYEAFGI 142 (196)
T ss_dssp HHHHHHHHHHSST
T ss_pred HHHHHHHhhcccC
Confidence 6655555554444
No 257
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=2.2 Score=50.31 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=47.8
Q ss_pred cccHHHHHHHHHHHHHhh--------CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC
Q 044036 136 RLLEHQREGVKFLYKLYK--------NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP 207 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~--------~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P 207 (875)
..++...+++.|.+.... ...|.+|.-..|.|||+.|-++.... ..+++-|-.
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-------------------~~~fi~v~~ 309 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-------------------RSRFISVKG 309 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-------------------CCeEEEeeC
Confidence 466677788887765443 33578899999999999998887643 344555555
Q ss_pred cchHHHHHHHHHH
Q 044036 208 SSVIQNWEIEFSR 220 (875)
Q Consensus 208 ~sLl~qW~~E~~k 220 (875)
..++..|.-|..+
T Consensus 310 ~~l~sk~vGesek 322 (494)
T COG0464 310 SELLSKWVGESEK 322 (494)
T ss_pred HHHhccccchHHH
Confidence 5999999877665
No 258
>PRK05580 primosome assembly protein PriA; Validated
Probab=86.43 E-value=5.6 Score=48.83 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=74.3
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR-KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~-~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
+..|||......++......|.++||.+........+...|.. .|..+..++|+++..+|.+...+...+... ++|+
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~--IVVg 247 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK--VVIG 247 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC--EEEe
Confidence 4568999998888877777899999999999988887777765 488999999999999998888877765432 6667
Q ss_pred cCCcccccCCCCCCEEEEcCC
Q 044036 591 TRAGGLGLNLVSANRVVIFDP 611 (875)
Q Consensus 591 t~agg~GLNL~~An~VI~~D~ 611 (875)
|+..- =+.+.....||+-+-
T Consensus 248 Trsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh-cccccCCCEEEEECC
Confidence 76432 245666666766654
No 259
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=86.35 E-value=7.6 Score=46.65 Aligned_cols=135 Identities=14% Similarity=0.087 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHHHH---
Q 044036 142 REGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWEIE--- 217 (875)
Q Consensus 142 ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~~E--- 217 (875)
..-|.-+.+.|.+...++++ +=|-|||..+..++..+... ....++|.+|. +....--++
T Consensus 175 ~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f---------------~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 175 LREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISF---------------LEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred HHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHh---------------cCCeEEEECCChhhHHHHHHHHHH
Confidence 34455667777777666665 56999999887666655421 23469999994 333332222
Q ss_pred -HH-----HhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeecccc----------cccccccccccccEEEEcCCccc
Q 044036 218 -FS-----RWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSY----------RIHGSILSEVNWEIVIVDEAHRL 279 (875)
Q Consensus 218 -~~-----k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l----------~~~~~~l~~~~w~~VIiDEAH~i 279 (875)
+. .|++ ..+.-..|.. ..|.+...... ....+......++++|+|||+-|
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI 306 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFV 306 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCe------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccC
Confidence 22 4555 1222222221 11222221111 11223345457899999999999
Q ss_pred cCcccHHHHHHHhcc-ccceEEeecCCC
Q 044036 280 KNEKSKLYMACLELK-TRNRIGLTGTIM 306 (875)
Q Consensus 280 kn~~S~~~kal~~l~-~~~rllLTGTPi 306 (875)
... .....+--+. ....+.+..||.
T Consensus 307 ~~~--~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 307 NPG--ALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred CHH--HHHHHHHHHccCCCceEEEeCCC
Confidence 662 2222222222 345555555653
No 260
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.34 E-value=4.8 Score=48.64 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..|...+..++ .-|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 5666666666665554 33788999999999999999988753
No 261
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.26 E-value=18 Score=43.04 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...++.+...+..+ +.-|+.-+.|.|||..|-.|+..+...
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 555555555544443 334789999999999999999888643
No 262
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.03 E-value=4.2 Score=39.24 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=17.6
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
++.-..|+|||..+..++....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHH
Confidence 3555789999999999888763
No 263
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=86.00 E-value=5.5 Score=45.36 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhCC------------CCcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 141 QREGVKFLYKLYKNK------------HGGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~------------~ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
|...+..+.+.+..+ +.-|+.-+.|.|||..|.++...++...
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~ 64 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTD 64 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 555555555555443 2346889999999999999998887643
No 264
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.99 E-value=9.8 Score=44.54 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...++.+.+.+..+ +.-|+.-..|+|||..|..++..+...
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 455555555555544 356789999999999999888877543
No 265
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.99 E-value=18 Score=43.45 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhCCC--Cc-EEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH--GG-ILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~--gg-ILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..|.+....++ .+ |+.-+.|.|||..+..++.++...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 5555555555555442 33 688899999999999999888654
No 266
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=85.79 E-value=4.5 Score=43.63 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhCC--CCcEEecCCCCchHHHHHHHHHHHhc
Q 044036 140 HQREGVKFLYKLYKNK--HGGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 140 yQ~~gv~~l~~~~~~~--~ggILaDemGLGKTiqaiall~~l~~ 181 (875)
+|...|.-|.+....+ -.-++--+.|+|||-++.+|..+++.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 5888888777766552 23367889999999999999999875
No 267
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.71 E-value=5.2 Score=47.48 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhCCCC---cEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKHG---GILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~g---gILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..+...+..++. -|+.-+.|+|||..|-.++..+...
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 55555555555555433 4688999999999999999888654
No 268
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.48 E-value=3.4 Score=46.43 Aligned_cols=52 Identities=19% Similarity=0.088 Sum_probs=36.4
Q ss_pred ccCCchhhhcccHHHHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHh
Q 044036 127 IQVPASINCRLLEHQREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 127 ~~vP~~i~~~L~pyQ~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.++|..+ .=|+.|.+.+...+.....+ .+.++.-+.|+|||..+-.++..+.
T Consensus 11 ~~~p~~l--~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 11 DYVPDRI--VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCCC--CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566655 34778887777665543222 4567888999999999988887763
No 269
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=85.43 E-value=1.6 Score=52.08 Aligned_cols=167 Identities=16% Similarity=0.136 Sum_probs=99.3
Q ss_pred cCCchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC
Q 044036 128 QVPASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP 207 (875)
Q Consensus 128 ~vP~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P 207 (875)
..|........|||++-+..|-... -....+.-..-+|||..++.++.+.... ...|+|+|.|
T Consensus 8 ~~pG~w~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~---------------~P~~~l~v~P 70 (557)
T PF05876_consen 8 AEPGPWRTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQ---------------DPGPMLYVQP 70 (557)
T ss_pred CCCCCCCCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEe---------------CCCCEEEEEE
Confidence 3456667789999999887664321 2355677788899999888877766532 4688999999
Q ss_pred c-chHHHHHHH-HHHh---cC-CcEEEEe---CCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCcc
Q 044036 208 S-SVIQNWEIE-FSRW---ST-FNVSIYH---GPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHR 278 (875)
Q Consensus 208 ~-sLl~qW~~E-~~k~---~~-~~v~v~~---G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ 278 (875)
+ .....|..+ |... .| ++-.+.. .........+.-.++ .+.++...+ ...|.....++|++||...
T Consensus 71 t~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg-~l~~~ga~S----~~~l~s~~~r~~~~DEvD~ 145 (557)
T PF05876_consen 71 TDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRFPGG-FLYLVGANS----PSNLRSRPARYLLLDEVDR 145 (557)
T ss_pred cHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheecCCC-EEEEEeCCC----CcccccCCcCEEEEechhh
Confidence 7 456777543 4332 22 2211111 001111111111122 244443332 3456677889999999998
Q ss_pred c----cCcccHHHHHHHhc---cccceEEeecCCCCCCHHHHHHH
Q 044036 279 L----KNEKSKLYMACLEL---KTRNRIGLTGTIMQNKIMELYNL 316 (875)
Q Consensus 279 i----kn~~S~~~kal~~l---~~~~rllLTGTPiqN~~~El~~L 316 (875)
+ ++.......+..+. .....+++..||.......++.+
T Consensus 146 ~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 146 YPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred ccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 8 34445555555544 45688999999986654444433
No 270
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=85.26 E-value=4.8 Score=44.55 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 137 LLEHQREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
++|+|...-.-+...+..++ .-++.-+.|+||+..|.+|+.+++...
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 46777777777777776653 445788999999999999999998754
No 271
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=85.23 E-value=6.6 Score=39.85 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=34.9
Q ss_pred cccccccccEEEEcCCccccCc----ccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhh
Q 044036 261 SILSEVNWEIVIVDEAHRLKNE----KSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDW 319 (875)
Q Consensus 261 ~~l~~~~w~~VIiDEAH~ikn~----~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~ 319 (875)
..+..-.|++||+||.=..-+. .......+..-+...-+.|||--.+ .+|..+.++
T Consensus 109 ~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p---~~Lie~ADl 168 (191)
T PRK05986 109 RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP---RELIEAADL 168 (191)
T ss_pred HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC---HHHHHhCch
Confidence 3445568999999997655432 2344555555455667999998544 444444443
No 272
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=85.00 E-value=10 Score=41.16 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHHhhCC-----CCcEEecCCCCchHHHHHHHHHHH
Q 044036 138 LEHQREGVKFLYKLYKNK-----HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~~~~-----~ggILaDemGLGKTiqaiall~~l 179 (875)
+|.=.+++..|-+++... .+-+|.-+.|.|||..+=-|....
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 444556666666666433 355778889999999776666543
No 273
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.98 E-value=5.5 Score=41.96 Aligned_cols=25 Identities=20% Similarity=-0.044 Sum_probs=19.8
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHh
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~ 180 (875)
...+|.-+.|+|||-.+.++...+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999998887776653
No 274
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.72 E-value=3 Score=48.65 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhc
Q 044036 142 REGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 142 ~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~ 181 (875)
...+..+......+ +..|+.-+.|+|||..|-+++..+..
T Consensus 20 ~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 20 DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 33344444444444 23488999999999999999887753
No 275
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=84.51 E-value=1.1 Score=55.23 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=73.2
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chH----HHHHHHHHHhcCCcEEEE
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVI----QNWEIEFSRWSTFNVSIY 229 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl----~qW~~E~~k~~~~~v~v~ 229 (875)
..+.++++.+|.|||+.+=..+...+.. .+.+++++|+|. .|+ ..|..-+..- ++++.-.
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~--------------~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~ 1007 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSY--------------YPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIEL 1007 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhcc--------------CCCccEEEEcCCchhhcccccchhhhcccC-CceeEec
Confidence 3577899999999999876555544332 345789999994 443 5586655443 5778888
Q ss_pred eCCChhHHHHHHHhCCceEEEeeccccccccccccc----ccccEEEEcCCccccCc
Q 044036 230 HGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSE----VNWEIVIVDEAHRLKNE 282 (875)
Q Consensus 230 ~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~----~~w~~VIiDEAH~ikn~ 282 (875)
+|+....... ....+++|||++.+-.....-.. .....+|+||.|.++..
T Consensus 1008 tgd~~pd~~~---v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1008 TGDVTPDVKA---VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred cCccCCChhh---eecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 8876554222 12357999999987543331111 13467999999998664
No 276
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.35 E-value=12 Score=45.27 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhCCC--Cc-EEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH--GG-ILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~--gg-ILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..|.+.+..++ .. |+.-..|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 6666777766666553 23 788899999999999999888754
No 277
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.25 E-value=8.2 Score=42.87 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHHHH---Hhh-CCCCcEEecCCCCchHHHHHHHHHHHhc
Q 044036 136 RLLEHQREGVKFLYK---LYK-NKHGGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~---~~~-~~~ggILaDemGLGKTiqaiall~~l~~ 181 (875)
..+.++..++.++.. .|. .+.+.+|.-++|+|||..+.+++..++.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 345555555554432 222 3466778889999999999999888753
No 278
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.16 E-value=4.3 Score=48.90 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..+.+.+..+ +.-|+.-+.|.|||..|..|...+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 666677776666554 344688999999999999999988764
No 279
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=84.02 E-value=4.8 Score=48.11 Aligned_cols=42 Identities=24% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhCCCC---cEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKHG---GILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~g---gILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+.-|...+..++- -|+.-+.|.|||..|-+++..+...
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 55555555555555433 3789999999999999999888643
No 280
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=83.83 E-value=4.3 Score=37.73 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=16.9
Q ss_pred EEecCCCCchHHHHHHHHHHH
Q 044036 159 ILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l 179 (875)
+|--+.|.|||..+-.++..+
T Consensus 2 ll~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc
Confidence 455688999999988888765
No 281
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=83.74 E-value=0.47 Score=47.52 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=24.0
Q ss_pred CceEEEeecccccccc--ccc--ccccccEEEEcCCccccC
Q 044036 245 GVEVLITSFDSYRIHG--SIL--SEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 245 ~~~VvItTy~~l~~~~--~~l--~~~~w~~VIiDEAH~ikn 281 (875)
..+|||++|..+-... ..+ ...+-.+||+||||+|-+
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4689999999765321 111 123457899999999944
No 282
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=83.65 E-value=33 Score=41.17 Aligned_cols=42 Identities=29% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..+.+.+..+ +.-|+.-+.|+|||..|-.|+.++...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444455555554433 233679999999999999998887644
No 283
>PRK06921 hypothetical protein; Provisional
Probab=83.16 E-value=12 Score=40.23 Aligned_cols=26 Identities=27% Similarity=0.141 Sum_probs=22.1
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.+.+|.-++|+|||..+.+++..+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 45677888999999999999988775
No 284
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=82.91 E-value=6.4 Score=43.82 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 137 LLEHQREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
++|+|...-+.+.+.+..++ .-++.-+.|+||+..|.+|+.+++...
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888888888776654 336888999999999999999998754
No 285
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.59 E-value=7 Score=45.43 Aligned_cols=102 Identities=10% Similarity=0.096 Sum_probs=56.7
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcCCcEEEEeCCChh
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRD 235 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~~~v~v~~G~~r~ 235 (875)
.+.+|.-+.|+|||..+-++...+... .+..+++.|.+..++......+..- .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~--------------~~~~~v~yv~~~~f~~~~~~~l~~~------------~- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESN--------------FSDLKVSYMSGDEFARKAVDILQKT------------H- 194 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHh--------------CCCCeEEEEEHHHHHHHHHHHHHHh------------h-
Confidence 345688899999998888777765421 1234566665555555544444320 0
Q ss_pred HHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCccc---HHHHHHHhc-cccceEEeecC
Q 044036 236 MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKS---KLYMACLEL-KTRNRIGLTGT 304 (875)
Q Consensus 236 ~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S---~~~kal~~l-~~~~rllLTGT 304 (875)
.....+. ..+ ...+++||||+|.+.+... .+...+..+ .....+++|+.
T Consensus 195 ~~~~~~~------------------~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 KEIEQFK------------------NEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred hHHHHHH------------------HHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 0001110 001 2458999999999976432 233344444 33346888844
No 286
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=82.59 E-value=6.3 Score=45.18 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=20.5
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhc
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~ 181 (875)
..+|.-..|+|||..+-++...+..
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~ 162 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILE 162 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3468889999999999888877753
No 287
>PRK12377 putative replication protein; Provisional
Probab=82.58 E-value=9.7 Score=40.47 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.4
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHh
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.+.+|.-++|+|||..+.+++..+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999999998875
No 288
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=82.54 E-value=6 Score=46.05 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=20.8
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhc
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~ 181 (875)
..+|.-+.|+|||..+-++...+..
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578899999999999888887753
No 289
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.47 E-value=1.8 Score=49.14 Aligned_cols=46 Identities=24% Similarity=0.215 Sum_probs=36.1
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSR 220 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k 220 (875)
+|-+|.-+.|.|||+.+.+++... .-.+-=|.|.+|...|.-|-.+
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~-------------------~atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATES-------------------GATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhh-------------------cceEeeccHHHhhhhccChHHH
Confidence 466789999999999999988754 2346678889999999766544
No 290
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.46 E-value=7.6 Score=46.50 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhCCC--Cc-EEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH--GG-ILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~--gg-ILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..|...+..++ .+ |+.-..|+|||..|..|+..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 6666666666665542 23 788999999999999999888653
No 291
>PRK06893 DNA replication initiation factor; Validated
Probab=82.34 E-value=9.5 Score=39.97 Aligned_cols=23 Identities=13% Similarity=-0.080 Sum_probs=19.2
Q ss_pred cEEecCCCCchHHHHHHHHHHHh
Q 044036 158 GILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 158 gILaDemGLGKTiqaiall~~l~ 180 (875)
.+|.-+.|+|||..+.++...+.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 36888999999999888887764
No 292
>PRK11823 DNA repair protein RadA; Provisional
Probab=82.33 E-value=11 Score=43.69 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=51.8
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcC--CcEEEEeCCCh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST--FNVSIYHGPNR 234 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~--~~v~v~~G~~r 234 (875)
-.+|+-++|.|||..++.++..... ...++|.|.-..-..++.....++.. .++.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~----------------~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~------- 138 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAA----------------AGGKVLYVSGEESASQIKLRAERLGLPSDNLY------- 138 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh----------------cCCeEEEEEccccHHHHHHHHHHcCCChhcEE-------
Confidence 3368889999999999999887631 24568888765555665544444322 1111
Q ss_pred hHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccC
Q 044036 235 DMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 235 ~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn 281 (875)
+..-..+......+...+.++||||+.+.+..
T Consensus 139 ---------------~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 139 ---------------LLAETNLEAILATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred ---------------EeCCCCHHHHHHHHHhhCCCEEEEechhhhcc
Confidence 11111111112223345778999999998743
No 293
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.16 E-value=9.5 Score=44.99 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhCCCCc---EEecCCCCchHHHHHHHHHHHhc
Q 044036 141 QREGVKFLYKLYKNKHGG---ILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~gg---ILaDemGLGKTiqaiall~~l~~ 181 (875)
|...+..|......++-+ ++.-+.|+|||..+.+++..+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 556666666665555433 78899999999999999888764
No 294
>PTZ00293 thymidine kinase; Provisional
Probab=82.12 E-value=4.4 Score=41.78 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=24.8
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS 209 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s 209 (875)
++.-.||+|||...|-.+..+. ....+++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~----------------~ag~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFT----------------YSEKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHH----------------HcCCceEEEEecc
Confidence 3567999999988777666542 2356788888853
No 295
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=82.07 E-value=17 Score=43.58 Aligned_cols=43 Identities=28% Similarity=0.241 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
|...+..+.+.+..+ +.-|+.-+.|.|||..|.+++..+....
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 445555555555444 2346889999999999999999887543
No 296
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=82.03 E-value=5.3 Score=39.90 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=35.0
Q ss_pred ccccccccEEEEcCCccccCc----ccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhh
Q 044036 262 ILSEVNWEIVIVDEAHRLKNE----KSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWV 320 (875)
Q Consensus 262 ~l~~~~w~~VIiDEAH~ikn~----~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l 320 (875)
.+..-.||+||+||.=..-+. .......+..-+...-+.|||.-. +.+|..+.+.+
T Consensus 92 ~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD~V 151 (173)
T TIGR00708 92 MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELADLV 151 (173)
T ss_pred HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCcee
Confidence 444568999999998654332 234455555555666799999854 45554444433
No 297
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=81.91 E-value=6.4 Score=39.50 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.1
Q ss_pred EecCCCCchHHHHHHHHHHH
Q 044036 160 LGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l 179 (875)
..-.|++|||...|..+..+
T Consensus 6 i~GpM~sGKS~eLi~~~~~~ 25 (176)
T PF00265_consen 6 ITGPMFSGKSTELIRRIHRY 25 (176)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCcCChhHHHHHHHHHHH
Confidence 34589999999988877655
No 298
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=81.33 E-value=7.7 Score=40.44 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=21.7
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.....+|.-+.|+|||..+.++.....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678899999999999988877654
No 299
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.32 E-value=9.9 Score=42.88 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=18.5
Q ss_pred cEEecCCCCchHHHHHHHHHHH
Q 044036 158 GILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 158 gILaDemGLGKTiqaiall~~l 179 (875)
.+|.-.+|.|||.++..++..+
T Consensus 140 i~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 140 FALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999998888765
No 300
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.17 E-value=6 Score=43.98 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=63.0
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcCCcEEEEeCCChh
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRD 235 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~~~v~v~~G~~r~ 235 (875)
+|.++.-+.|+|||+.|=|+.... .-.+.=|.-+.|...|+-|=++..
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc-------------------~tTFFNVSsstltSKwRGeSEKlv------------- 293 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC-------------------GTTFFNVSSSTLTSKWRGESEKLV------------- 293 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh-------------------cCeEEEechhhhhhhhccchHHHH-------------
Confidence 588899999999999998887754 122444555677888975544321
Q ss_pred HHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCc--------ccHHHHH--HHh---c-----cccc
Q 044036 236 MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNE--------KSKLYMA--CLE---L-----KTRN 297 (875)
Q Consensus 236 ~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~--------~S~~~ka--l~~---l-----~~~~ 297 (875)
+.+-.+ .+ .+-+..|.|||..-|-+. .|.+.++ +.. + ..+.
T Consensus 294 RlLFem--------------AR-------fyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~ 352 (491)
T KOG0738|consen 294 RLLFEM--------------AR-------FYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKV 352 (491)
T ss_pred HHHHHH--------------HH-------HhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccccee
Confidence 011111 11 124577889998887432 2333332 111 2 2345
Q ss_pred eEEeecCCCCCCHHH
Q 044036 298 RIGLTGTIMQNKIME 312 (875)
Q Consensus 298 rllLTGTPiqN~~~E 312 (875)
++.|-||-+.-.++|
T Consensus 353 VmVLAATN~PWdiDE 367 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDE 367 (491)
T ss_pred EEEEeccCCCcchHH
Confidence 788999988777665
No 301
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=81.06 E-value=7.5 Score=42.60 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=66.1
Q ss_pred EecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcC-CcEEEEe---CCChh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYH---GPNRD 235 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~-~~v~v~~---G~~r~ 235 (875)
+.---|.|||-+..=++..+.. ...++|+.+--.--.-=.+++.-|+. ..+.++. |....
T Consensus 144 ~vGVNG~GKTTTIaKLA~~l~~----------------~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA 207 (340)
T COG0552 144 FVGVNGVGKTTTIAKLAKYLKQ----------------QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA 207 (340)
T ss_pred EEecCCCchHhHHHHHHHHHHH----------------CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH
Confidence 4556799999776655555532 35567777765544455556666654 3333333 32222
Q ss_pred -HHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCccc------HHHHHHHhc--cccceEEe--ecC
Q 044036 236 -MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKS------KLYMACLEL--KTRNRIGL--TGT 304 (875)
Q Consensus 236 -~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S------~~~kal~~l--~~~~rllL--TGT 304 (875)
-.++.+.. -...++|+|++|=|-|+-|... ++.+.+... .+++.++| =||
T Consensus 208 aVafDAi~~-------------------Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 208 AVAFDAIQA-------------------AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred HHHHHHHHH-------------------HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 11222211 1234679999999999977542 233333332 34555554 488
Q ss_pred CCCCCHHH
Q 044036 305 IMQNKIME 312 (875)
Q Consensus 305 PiqN~~~E 312 (875)
-=||.+..
T Consensus 269 tGqnal~Q 276 (340)
T COG0552 269 TGQNALSQ 276 (340)
T ss_pred cChhHHHH
Confidence 87877664
No 302
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.99 E-value=24 Score=42.43 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..|.+.+..+ ..-|+.-+.|+|||..|..|+..++..
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 334445555544443 344678999999999999999888653
No 303
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=80.94 E-value=22 Score=42.93 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
|...++.+.+.+..++ .-||.-..|+|||..|..++..+....
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 6666666666665553 457888999999999999999887543
No 304
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=80.42 E-value=31 Score=33.27 Aligned_cols=116 Identities=13% Similarity=0.017 Sum_probs=73.4
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
...+...+..|+.+....|.||+|++.....++.|-+.|....-.-..=||-.... ...... ++|+.
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~----------~~~~~P-V~l~~-- 77 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG----------PAAGQP-VLLTW-- 77 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC----------CCCCCC-EEEEc--
Confidence 34589999999999999999999999999999999999986422211112211100 001223 44441
Q ss_pred cccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHH
Q 044036 594 GGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQ 657 (875)
Q Consensus 594 gg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~ 657 (875)
...-|...++.+|++++.+-+. ..+..| |+-++ .+.-+.+-..|..+|.
T Consensus 78 -~~~~~~~~~~~LinL~~~~p~~--~~~F~R-----------vieiv-~~d~~~~~~aR~r~r~ 126 (142)
T PRK05728 78 -PGKRNANHRDLLINLDGAVPAF--AAAFER-----------VVDFV-GYDEAAKQAARERWKA 126 (142)
T ss_pred -CCCCCCCCCcEEEECCCCCcch--hhcccE-----------EEEEe-CCCHHHHHHHHHHHHH
Confidence 1123667788899998865222 223333 45666 4567777777777774
No 305
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=80.22 E-value=13 Score=35.73 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccc
Q 044036 518 MRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLG 597 (875)
Q Consensus 518 l~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~G 597 (875)
...+.+|+.+....|.||+|++.....++.|-+.|....-.-..=||-... ......-++|++..-.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~-----------~~~~~~PV~i~~~~~~-- 81 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGE-----------PPAARQPVLITWDQEA-- 81 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT------------SSTT--SEEEE-TTS---
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCC-----------CCCCCCeEEEecCccc--
Confidence 588999999999999999999999999999999998653322222222110 0011112566643321
Q ss_pred cCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHH
Q 044036 598 LNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQ 657 (875)
Q Consensus 598 LNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~ 657 (875)
-....++.+|++++.+ |.. ..+..| |+-++..+.- .+-..|..+|.
T Consensus 82 ~~~~~~~vLinL~~~~-p~~-~~~f~r-----------vieiv~~~~~-~~~~aR~r~r~ 127 (137)
T PF04364_consen 82 NPNNHADVLINLSGEV-PPF-FSRFER-----------VIEIVDQDDE-AKQAARERYRF 127 (137)
T ss_dssp ---S--SEEEE--SS---GG-GGG-SE-----------EEEEE-SSHH-HHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCCC-cch-hhcccE-----------EEEEecCCHH-HHHHHHHHHHH
Confidence 2344589999999987 222 223333 3555555444 66677777764
No 306
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=80.12 E-value=2.9 Score=45.60 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchH
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVI 211 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl 211 (875)
|-+-|..+|.+ . .+..++-...|+|||.+.+.-+..++...+ .....+|+|+++...
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~------------~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGG------------VPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS------------STGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhcccc------------CChHHheecccCHHH
Confidence 45678888876 1 344555566899999999988888765432 245669999997653
No 307
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=80.00 E-value=9.5 Score=46.91 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=66.6
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHH----HHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEE
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDI----LEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVF 587 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~----L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~ 587 (875)
...|||..+..-.+-.....|.+++|.+.....+.- +..++...|+++..++|+++..+|..++....++.- . +
T Consensus 290 ~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~-~-I 367 (681)
T PRK10917 290 DVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEA-D-I 367 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCC-C-E
Confidence 567899876554444445678899999998876654 445555568999999999999999999999887633 3 4
Q ss_pred EEecC-CcccccCCCCCCEEEE
Q 044036 588 LISTR-AGGLGLNLVSANRVVI 608 (875)
Q Consensus 588 LiSt~-agg~GLNL~~An~VI~ 608 (875)
+|.|. .....+.+.....||+
T Consensus 368 vVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 368 VIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred EEchHHHhcccchhcccceEEE
Confidence 45554 3344555666655554
No 308
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=79.60 E-value=18 Score=42.41 Aligned_cols=132 Identities=14% Similarity=0.063 Sum_probs=73.9
Q ss_pred chhhhcccHHHHHHHHHHHHHhhCCCCc------EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEE
Q 044036 131 ASINCRLLEHQREGVKFLYKLYKNKHGG------ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLI 204 (875)
Q Consensus 131 ~~i~~~L~pyQ~~gv~~l~~~~~~~~gg------ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LI 204 (875)
++....|.|||...+.-++..+..+.|. ++--.=|=|||-.+.+++.+.+--. ......++|
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~------------~~~~~~~~i 123 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLN------------WRSGAGIYI 123 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhh------------hhcCCcEEE
Confidence 3445689999999998888766655444 6677789999988777766643211 234567899
Q ss_pred EcCcchH-HHHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeec---cc---ccccccccccccccEEEEcCCc
Q 044036 205 ICPSSVI-QNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSF---DS---YRIHGSILSEVNWEIVIVDEAH 277 (875)
Q Consensus 205 V~P~sLl-~qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy---~~---l~~~~~~l~~~~w~~VIiDEAH 277 (875)
++|+--. .+=-+++..-.- ... ............+.|+-- .. +..+.......+..++|+||-|
T Consensus 124 ~A~s~~qa~~~F~~ar~mv~------~~~---~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih 194 (546)
T COG4626 124 LAPSVEQAANSFNPARDMVK------RDD---DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELH 194 (546)
T ss_pred EeccHHHHHHhhHHHHHHHH------hCc---chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhh
Confidence 9997432 221112111100 000 000000001111222111 11 1234456677789999999999
Q ss_pred cccCcc
Q 044036 278 RLKNEK 283 (875)
Q Consensus 278 ~ikn~~ 283 (875)
..+++.
T Consensus 195 ~f~~~~ 200 (546)
T COG4626 195 LFGKQE 200 (546)
T ss_pred hhcCHH
Confidence 998875
No 309
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.55 E-value=26 Score=42.33 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhCCCCc---EEecCCCCchHHHHHHHHHHHhc
Q 044036 141 QREGVKFLYKLYKNKHGG---ILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~gg---ILaDemGLGKTiqaiall~~l~~ 181 (875)
|...+..|...+..++-+ |+.-+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 666777776666655433 78999999999999999988764
No 310
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=78.76 E-value=0.85 Score=49.83 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=30.4
Q ss_pred cccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCCCC
Q 044036 267 NWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNK 309 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~ 309 (875)
+-.+||+||||+ ..-.+....+.+|-...+..+||.+.|-+
T Consensus 243 ~dAfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiD 283 (348)
T COG1702 243 NDAFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQID 283 (348)
T ss_pred CCeEEEEecccc--cchhhhceeeeeecCCceEEEEcCccccc
Confidence 347899999998 23334445567778888999999997754
No 311
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=78.41 E-value=6.1 Score=40.23 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=14.0
Q ss_pred EecCCCCchHHHHHHH-HHHHh
Q 044036 160 LGDDMGLGKTIQTIAF-LAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaial-l~~l~ 180 (875)
+.--+|.|||..|+.. +...+
T Consensus 5 ~~G~pGsGKS~~av~~~i~~~l 26 (193)
T PF05707_consen 5 ITGKPGSGKSYYAVSYVIIPAL 26 (193)
T ss_dssp EE--TTSSHHHHHHHHHHH-GG
T ss_pred EEcCCCCcHhHHHHHHHHHHHH
Confidence 4456899999999887 55543
No 312
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=78.41 E-value=25 Score=40.82 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=20.5
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhc
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~ 181 (875)
..+|.-+.|+|||..+-++...+..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~ 156 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 4578889999999999888877653
No 313
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.03 E-value=38 Score=39.81 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCC--Cc-EEecCCCCchHHHHHHHHHHHhc
Q 044036 141 QREGVKFLYKLYKNKH--GG-ILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~--gg-ILaDemGLGKTiqaiall~~l~~ 181 (875)
|...+..+.+.+..++ .+ ++.-+.|.|||..|-.++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6666777766666553 33 67999999999999998888754
No 314
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=78.03 E-value=14 Score=41.09 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=80.3
Q ss_pred CCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHH---HHHhcCCcEEEEeCCChhHHHHHH
Q 044036 165 GLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIE---FSRWSTFNVSIYHGPNRDMILEKL 241 (875)
Q Consensus 165 GLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E---~~k~~~~~v~v~~G~~r~~~~~~~ 241 (875)
|+|||=.++.++..+..++. .-..+.+.-+....+..++|.|.+....--+| +.+.++ +.++-|.+|......+
T Consensus 47 GTGKTP~v~~L~~~L~~~G~-~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~--~~V~V~~dR~~~~~~~ 123 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGY-RPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP--VPVIVGPDRVAAARAA 123 (326)
T ss_pred CCCchHHHHHHHHHHHhcCC-ceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC--CcEEEeCcHHHHHHHH
Confidence 99999999999988866532 11222222222223348888888854444444 455555 7777788877666665
Q ss_pred Hh-CCceEEEeecccccccccccccccccEEEEcCCccccC----cccHHHHHHHhccccceEEeecCCCCCC
Q 044036 242 EA-CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKN----EKSKLYMACLELKTRNRIGLTGTIMQNK 309 (875)
Q Consensus 242 ~~-~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn----~~S~~~kal~~l~~~~rllLTGTPiqN~ 309 (875)
.. .+++|+|.-=. |+.. .| ..+.++|++|-.+-+.| +....-.-+..++.--.+++|+.+-...
T Consensus 124 ~~~~~~dviilDDG-fQh~--~L-~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~~~~~~~~~ 192 (326)
T PF02606_consen 124 LKEFPADVIILDDG-FQHR--RL-KRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIVTGCDASDP 192 (326)
T ss_pred HHHCCCCEEEEcCC-cccc--cc-cCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEEcCCCcchh
Confidence 54 45788776422 1110 11 13678999998777666 2223333344554445566677765433
No 315
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=77.63 E-value=18 Score=39.90 Aligned_cols=48 Identities=15% Similarity=0.009 Sum_probs=38.3
Q ss_pred cccHHHHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 136 RLLEHQREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
.++|+|...-+.+...+..++ .-++.-+.|+||+..|..|+..++...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 367888888887777776554 446888999999999999999998754
No 316
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=77.61 E-value=9.5 Score=45.09 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=63.6
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-c----hHHHHHHHHHHhcCCcEEEEeC
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-S----VIQNWEIEFSRWSTFNVSIYHG 231 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-s----Ll~qW~~E~~k~~~~~v~v~~G 231 (875)
.+.|. +=--|||...+++++.++.. ...=.+..|+-- . +...-...+.+|+|-+..+-..
T Consensus 205 TVFLV-PRRHGKTWf~VpiIsllL~s--------------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k 269 (668)
T PHA03372 205 TVFLV-PRRHGKTWFIIPIISFLLKN--------------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK 269 (668)
T ss_pred eEEEe-cccCCceehHHHHHHHHHHh--------------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec
Confidence 34443 56789999988888877641 123356777763 2 2333455577898833221110
Q ss_pred CChhHHHHHHHhCCceEEEeeccccc--------ccccccccccccEEEEcCCccccCcccHHHHHHHhccccceEEeec
Q 044036 232 PNRDMILEKLEACGVEVLITSFDSYR--------IHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTG 303 (875)
Q Consensus 232 ~~r~~~~~~~~~~~~~VvItTy~~l~--------~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTG 303 (875)
+ ++++.+....+ .....++...|+++++||||-++...-...--+...+....|.+|.
T Consensus 270 ~--------------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS 335 (668)
T PHA03372 270 D--------------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISS 335 (668)
T ss_pred C--------------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeC
Confidence 0 11111111111 1233566678999999999999764222222222224555566665
Q ss_pred C
Q 044036 304 T 304 (875)
Q Consensus 304 T 304 (875)
|
T Consensus 336 ~ 336 (668)
T PHA03372 336 T 336 (668)
T ss_pred C
Confidence 5
No 317
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=77.53 E-value=29 Score=33.99 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=58.3
Q ss_pred ccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecC
Q 044036 513 KSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTR 592 (875)
Q Consensus 513 ~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ 592 (875)
..++++..+.+|+.+....|.||+|.+.....++.|-..|-...-.-..=||..... ...... ++|+
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~----------~~a~~P-V~L~-- 76 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDP----------QPEKQP-IYIT-- 76 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCC----------CCCCCC-EEEe--
Confidence 446799999999999999999999999999999999999976422211222211100 001122 5555
Q ss_pred CcccccCCCCCCEEEEcCCCCC
Q 044036 593 AGGLGLNLVSANRVVIFDPNWN 614 (875)
Q Consensus 593 agg~GLNL~~An~VI~~D~~WN 614 (875)
.+..+.| .++.+|++++.+-
T Consensus 77 ~~~~~p~--~~~vLiNL~~~~~ 96 (154)
T PRK06646 77 DELQNPN--NASVLVIISPTDI 96 (154)
T ss_pred cCCCCCC--CCCEEEECCCccc
Confidence 2334555 7888999998653
No 318
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=77.49 E-value=3.1 Score=43.17 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=17.3
Q ss_pred CcEEecCCCCchHHHHHHHHHH
Q 044036 157 GGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~ 178 (875)
..||.-+.|+|||-.|-.+...
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHhc
Confidence 5789999999999776655544
No 319
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=77.41 E-value=13 Score=44.54 Aligned_cols=125 Identities=13% Similarity=0.092 Sum_probs=64.1
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHHHH----HHHhcCCc-EEEEe
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWEIE----FSRWSTFN-VSIYH 230 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~~E----~~k~~~~~-v~v~~ 230 (875)
-.+..-+=--|||..+.+++..++.. ...-.+++++|- .+...--+| +++|++-. +....
T Consensus 256 ~tVflVPRR~GKTwivv~iI~~ll~s--------------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk 321 (738)
T PHA03368 256 ATVFLVPRRHGKTWFLVPLIALALAT--------------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK 321 (738)
T ss_pred ceEEEecccCCchhhHHHHHHHHHHh--------------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec
Confidence 44555566789999877666655421 135568999994 444444344 45676522 22223
Q ss_pred CCChhHHHHHHHhCC-ceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHH--hccccceEEeecC
Q 044036 231 GPNRDMILEKLEACG-VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACL--ELKTRNRIGLTGT 304 (875)
Q Consensus 231 G~~r~~~~~~~~~~~-~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~--~l~~~~rllLTGT 304 (875)
|. .+.-.+..++ ..|...| . .....+....++++|+||||-|+.. .....+- .-.....|.+|.|
T Consensus 322 Ge---~I~i~f~nG~kstI~FaS---a-rntNsiRGqtfDLLIVDEAqFIk~~--al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 322 GE---TISFSFPDGSRSTIVFAS---S-HNTNGIRGQDFNLLFVDEANFIRPD--AVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred Cc---EEEEEecCCCccEEEEEe---c-cCCCCccCCcccEEEEechhhCCHH--HHHHHHHHHhccCccEEEEecC
Confidence 31 0000000111 0111110 1 1233466678999999999999763 2222221 1245566777765
No 320
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=77.29 E-value=9 Score=44.44 Aligned_cols=25 Identities=28% Similarity=0.045 Sum_probs=20.4
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHh
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.+.+|.-+.|+|||..+-++...+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3467888999999999888887764
No 321
>PRK09183 transposase/IS protein; Provisional
Probab=76.71 E-value=14 Score=39.49 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 141 QREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
++.++.|+ ..+.+.+|.-+.|.|||..+.++...+
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 44455553 246777888899999999999886654
No 322
>PRK05642 DNA replication initiation factor; Validated
Probab=76.70 E-value=9.9 Score=40.02 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=24.4
Q ss_pred ccEEEEcCCccccCccc---HHHHHHHhcc-ccceEEeecC
Q 044036 268 WEIVIVDEAHRLKNEKS---KLYMACLELK-TRNRIGLTGT 304 (875)
Q Consensus 268 w~~VIiDEAH~ikn~~S---~~~kal~~l~-~~~rllLTGT 304 (875)
.+++|+|+.|.+.+... ..+..+..+. ...++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 47899999999865432 2444444443 3567888887
No 323
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=76.12 E-value=17 Score=42.05 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=18.7
Q ss_pred cEEecCCCCchHHHHHHHHHHHh
Q 044036 158 GILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 158 gILaDemGLGKTiqaiall~~l~ 180 (875)
.++.-..|.|||.++.-++.++.
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 35677899999999988887663
No 324
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=76.02 E-value=2.1e+02 Score=35.46 Aligned_cols=183 Identities=16% Similarity=0.076 Sum_probs=90.0
Q ss_pred hhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHH
Q 044036 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQ 212 (875)
Q Consensus 133 i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~ 212 (875)
++-.|.+||+..+.-+++ ..||++.-..|||==-.++.++..+. .+..-+|+|- ..
T Consensus 10 ~~~~lL~Ye~qv~~~ll~----~d~~L~V~a~GLsl~~l~~~~l~~~s----------------~~~sL~LvLN----~~ 65 (892)
T KOG0442|consen 10 KNMALLEYEQQVLLELLE----ADGNLLVLAPGLSLLRLVAELLILFS----------------PPGSLVLVLN----TQ 65 (892)
T ss_pred CCcccchhHHHHHHhhhc----ccCceEEecCCcCHHHHHHHHHHHhC----------------CccceEEEec----Cc
Confidence 333389999998887763 57778888889997666666665542 1122234443 44
Q ss_pred HHHHH-HHHhcC-CcEEEEeCC-ChhHHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCccccCcccHHH
Q 044036 213 NWEIE-FSRWST-FNVSIYHGP-NRDMILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHRLKNEKSKLY 287 (875)
Q Consensus 213 qW~~E-~~k~~~-~~v~v~~G~-~r~~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~ikn~~S~~~ 287 (875)
-|..| |..... ..+...... ...........|+ |.++|--.+..+ ...+..-....++++-||.+.+... -.
T Consensus 66 ~~ee~~f~s~lk~~~~t~~~s~ls~~~R~~~Yl~GG--v~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets~-ea 142 (892)
T KOG0442|consen 66 EAEEEYFSSKLKEPLVTEDPSELSVNKRRSKYLEGG--VFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETSQ-EA 142 (892)
T ss_pred hhhHHHHHHhcCcCCCccChhhcchhhhHHhhhcCC--eEEeeeceeeeehhcCccchhHcceEEEechhhhhhcch-hH
Confidence 56655 111111 111111110 1111122222333 555555544432 2233334568899999999987533 22
Q ss_pred HHHHhccccce----EEeecCCCC--CCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccC
Q 044036 288 MACLELKTRNR----IGLTGTIMQ--NKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG 342 (875)
Q Consensus 288 kal~~l~~~~r----llLTGTPiq--N~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g 342 (875)
-+++-++.+.+ =+.|--|.. -.+.-+-..+..|.....--+..|...+..++...
T Consensus 143 FIlRl~R~knk~gfIkAFsd~P~sf~~gf~~l~r~mR~Lfvr~v~l~PRF~~~V~s~L~~~ 203 (892)
T KOG0442|consen 143 FILRLYRSKNKTGFIKAFSDSPESFVSGFSHLERKMRNLFVRHVLLWPRFHVNVESSLNQL 203 (892)
T ss_pred HHHHHHHHhcCCcceeccccCchhhhccchHHHHHHHHHHhhhheeccchHhHHhhhhccC
Confidence 33333333333 344444421 12233334444444433344455666665555443
No 325
>CHL00206 ycf2 Ycf2; Provisional
Probab=75.67 E-value=6.7 Score=52.19 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=29.8
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW 214 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW 214 (875)
+|.+|.-++|+|||..|=|++... .-|++-|....++..|
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es-------------------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNS-------------------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhc-------------------CCceEEEEHHHHhhcc
Confidence 588899999999999998887653 3345555556677666
No 326
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=75.57 E-value=23 Score=39.58 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHHHHhhC-CCCcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 137 LLEHQREGVKFLYKLYKN-KHGGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~-~~ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
++|+|...-+.+...-.. .++-++.-+.|.|||..|..|+..++...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 466666666666554222 23445788999999999999999988754
No 327
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=75.27 E-value=19 Score=44.04 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...++.+...+..++ .-|+.-+.|.|||..|-.++.++...
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 5555666665555543 33788999999999999999888653
No 328
>PRK14873 primosome assembly protein PriA; Provisional
Probab=75.03 E-value=14 Score=44.98 Aligned_cols=79 Identities=18% Similarity=0.075 Sum_probs=66.8
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc-C-CcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEec
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRK-G-YSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIST 591 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~-g-~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt 591 (875)
.|||.+....++......|..+||...-......+...|... | -.+..+++..+..+|.+...+..++... |+|.|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~--IViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR--VVVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc--EEEEc
Confidence 479999999999999999999999999999888888888754 4 6799999999999999998888776443 66676
Q ss_pred CCc
Q 044036 592 RAG 594 (875)
Q Consensus 592 ~ag 594 (875)
+++
T Consensus 248 RSA 250 (665)
T PRK14873 248 RSA 250 (665)
T ss_pred cee
Confidence 654
No 329
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=74.96 E-value=19 Score=40.91 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHhh---CCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 138 LEHQREGVKFLYKLYK---NKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~~---~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
|+-|.+-+.-.+.... ...+.++.-..|+|||..+-.++..+.
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4445544444433322 224578899999999999998887763
No 330
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=74.85 E-value=20 Score=40.05 Aligned_cols=42 Identities=26% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..+......++ .-||.-+.|.|||..+-+++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4555555555554443 34788999999999999998887644
No 331
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=74.64 E-value=24 Score=47.58 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=77.4
Q ss_pred CchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc
Q 044036 130 PASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS 209 (875)
Q Consensus 130 P~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s 209 (875)
+..+...|-+-|++++..++.. ..+-.+|---.|+|||.+.-+++..+.... ......++.++|++
T Consensus 961 ~~~~~~~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~------------~~~~~~V~glAPTg 1026 (1747)
T PRK13709 961 PGELMEGLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLP------------ESERPRVVGLGPTH 1026 (1747)
T ss_pred HHHhcCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhh------------cccCceEEEECCcH
Confidence 3444557899999999987651 124556777789999988766665542100 11234588889987
Q ss_pred hHHHHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHH
Q 044036 210 VIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMA 289 (875)
Q Consensus 210 Ll~qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~ka 289 (875)
-...=..| .+ -....+...+... ........ ......+++|||||-.+-+. .....
T Consensus 1027 rAAk~L~e----~G--------i~A~TI~s~L~~~---------~~~~~~~~-~~~~~~~llIVDEaSMv~~~--~m~~L 1082 (1747)
T PRK13709 1027 RAVGEMRS----AG--------VDAQTLASFLHDT---------QLQQRSGE-TPDFSNTLFLLDESSMVGNT--DMARA 1082 (1747)
T ss_pred HHHHHHHh----cC--------cchhhHHHHhccc---------cccccccc-CCCCCCcEEEEEccccccHH--HHHHH
Confidence 54432222 11 1111111111100 00000000 11134589999999988543 45555
Q ss_pred HHhcc-ccceEEeecCCCC
Q 044036 290 CLELK-TRNRIGLTGTIMQ 307 (875)
Q Consensus 290 l~~l~-~~~rllLTGTPiq 307 (875)
+..+. ...|++|.|=+-|
T Consensus 1083 l~~~~~~garvVLVGD~~Q 1101 (1747)
T PRK13709 1083 YALIAAGGGRAVSSGDTDQ 1101 (1747)
T ss_pred HHhhhcCCCEEEEecchHh
Confidence 55554 3678999987655
No 332
>PRK04132 replication factor C small subunit; Provisional
Probab=74.49 E-value=12 Score=46.71 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=29.7
Q ss_pred cccEEEEcCCccccCcc-cHHHHHHHhccccceEEeecCCCCCCHHHHH
Q 044036 267 NWEIVIVDEAHRLKNEK-SKLYMACLELKTRNRIGLTGTIMQNKIMELY 314 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~-S~~~kal~~l~~~~rllLTGTPiqN~~~El~ 314 (875)
++.+||+||||++.... ..+.+.+.......+++|+.++...=+.-+.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr 678 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 678 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh
Confidence 47899999999994321 1222333333567888898877544433333
No 333
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=74.44 E-value=40 Score=39.79 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=16.3
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~ 180 (875)
|.-..|.|||..+..++..+.
T Consensus 355 LVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 355 LVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 556789999999887776653
No 334
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=74.36 E-value=4.7 Score=44.54 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=23.4
Q ss_pred HhhCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 151 LYKNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 151 ~~~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
++....|.+|-.+.|+|||+.|-++....
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akea 151 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEA 151 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHHc
Confidence 33456788999999999999998887643
No 335
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=74.24 E-value=12 Score=41.08 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.1
Q ss_pred cEEecCCCCchHHHHHHHHHHHhcCCC
Q 044036 158 GILGDDMGLGKTIQTIAFLAAVFGKDE 184 (875)
Q Consensus 158 gILaDemGLGKTiqaiall~~l~~~~~ 184 (875)
-++.-+.|.|||..|.++...++...+
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~ 53 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENP 53 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCc
Confidence 577888999999999999999986553
No 336
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=74.19 E-value=17 Score=40.12 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=28.0
Q ss_pred ccccEEEEcCCccccCcccH---HHHH---HHhc----cccceEEeecCCCCCCHHHH
Q 044036 266 VNWEIVIVDEAHRLKNEKSK---LYMA---CLEL----KTRNRIGLTGTIMQNKIMEL 313 (875)
Q Consensus 266 ~~w~~VIiDEAH~ikn~~S~---~~ka---l~~l----~~~~rllLTGTPiqN~~~El 313 (875)
.++++||||=+-++-+.... ..+. +..+ .....+.|.||--+|.+...
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a 252 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH
Confidence 46799999999887554431 2222 2111 22345888999656655544
No 337
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=74.12 E-value=9.2 Score=44.51 Aligned_cols=42 Identities=21% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+.++...+..++ .-|+.-+.|.|||..|.+++.+++..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 6677777777766553 34678899999999999999988754
No 338
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.80 E-value=6.5 Score=45.23 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=18.1
Q ss_pred CcEEecCCCCchHHHHHHHHHH
Q 044036 157 GGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~ 178 (875)
..||.-+.|+|||..+-++...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5678889999999988877654
No 339
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=73.77 E-value=42 Score=37.16 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=19.9
Q ss_pred CCcEEecCCCCchHHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l 179 (875)
.+.++.-+.|+|||..+-++...+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh
Confidence 456889999999999998877654
No 340
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=73.76 E-value=22 Score=47.37 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=76.3
Q ss_pred hhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchH
Q 044036 132 SINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVI 211 (875)
Q Consensus 132 ~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl 211 (875)
.+...|-+-|++++..++.. ..+-++|--..|+|||.+.-+++..+..-. ......++.++|++-.
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~------------e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLP------------ESERPRVVGLGPTHRA 896 (1623)
T ss_pred hhhcccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHh------------hccCceEEEEechHHH
Confidence 44457999999999987652 234556777789999998766555432100 1123458889997654
Q ss_pred HHHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHH
Q 044036 212 QNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACL 291 (875)
Q Consensus 212 ~qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~ 291 (875)
..=..+. + -....+...+.... ...... .......+++|||||-.+-+. ...+.+.
T Consensus 897 a~~L~e~----G--------i~A~TIasfL~~~~---------~~~~~~-~~~~~~~~llIVDEASMV~~~--~m~~ll~ 952 (1623)
T PRK14712 897 VGEMRSA----G--------VDAQTLASFLHDTQ---------LQQRSG-ETPDFSNTLFLLDESSMVGNT--DMARAYA 952 (1623)
T ss_pred HHHHHHh----C--------chHhhHHHHhcccc---------chhhcc-cCCCCCCcEEEEEccccccHH--HHHHHHH
Confidence 4332221 1 11011111111000 000000 011134589999999998553 4444555
Q ss_pred hcc-ccceEEeecCCCCCC
Q 044036 292 ELK-TRNRIGLTGTIMQNK 309 (875)
Q Consensus 292 ~l~-~~~rllLTGTPiqN~ 309 (875)
.+. ...|++|.|=+-|..
T Consensus 953 ~~~~~garvVLVGD~~QL~ 971 (1623)
T PRK14712 953 LIAAGGGRAVASGDTDQLQ 971 (1623)
T ss_pred hhhhCCCEEEEEcchhhcC
Confidence 554 357899998775543
No 341
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=73.11 E-value=17 Score=44.22 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=66.5
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHH----HHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEE
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEK----FLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVF 587 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~----~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~ 587 (875)
...|||..+..-.+......|.+++|-+.....+.-+.. ++...|+++..++|+++..+|..+++...++.. . +
T Consensus 264 ~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~-~-I 341 (630)
T TIGR00643 264 DVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQI-H-L 341 (630)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCC-C-E
Confidence 567899876443333334578899999998877665544 444458999999999999999999998887633 3 4
Q ss_pred EEecC-CcccccCCCCCCEEEEcC
Q 044036 588 LISTR-AGGLGLNLVSANRVVIFD 610 (875)
Q Consensus 588 LiSt~-agg~GLNL~~An~VI~~D 610 (875)
+|+|. ..-..+.+.....||+=+
T Consensus 342 iVgT~~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 342 VVGTHALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred EEecHHHHhccccccccceEEEec
Confidence 44544 334456666666666533
No 342
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=73.09 E-value=8.4 Score=41.29 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHH
Q 044036 139 EHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 139 pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~ 178 (875)
|+.+.-++.+......+...+|--++|+|||..|-++...
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 4455556666666667888899999999999999888764
No 343
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=73.04 E-value=25 Score=44.42 Aligned_cols=39 Identities=15% Similarity=0.332 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhC--CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 141 QREGVKFLYKLYKN--KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 141 Q~~gv~~l~~~~~~--~~ggILaDemGLGKTiqaiall~~l 179 (875)
|..-++.++..+.. ..+.||.-+.|.|||..+=+++..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 44457777764433 3577899999999999988877765
No 344
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=72.97 E-value=40 Score=37.25 Aligned_cols=43 Identities=14% Similarity=0.393 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
|..++..+...+..++ .-++.-+.|.||+..|.+|+..++...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 6667777777666653 446788999999999999999998764
No 345
>CHL00176 ftsH cell division protein; Validated
Probab=72.96 E-value=17 Score=44.10 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.0
Q ss_pred CCCcEEecCCCCchHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~ 178 (875)
..|.+|.-+.|+|||..|=+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999998887654
No 346
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=72.33 E-value=9.2 Score=39.79 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=35.9
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhc
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS 222 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~ 222 (875)
-.++.-+.|+|||+.++.|+...+.. ...+++.|+-..-..++.+.+..+.
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~---------------~ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKN---------------FGEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHH---------------HT--EEEEESSS-HHHHHHHHHTTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhh---------------cCCcEEEEEecCCHHHHHHHHHHcC
Confidence 34678899999999999999876432 0456888887666677777777654
No 347
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=72.23 E-value=8.1 Score=44.06 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=20.9
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
..|.+|.-+.|+|||..|-++...+
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh
Confidence 4678899999999999988887654
No 348
>PRK11054 helD DNA helicase IV; Provisional
Probab=72.11 E-value=5.8 Score=48.58 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=48.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWE 215 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~ 215 (875)
.|-+-|+++|..- ....++-...|+|||.+.++-+.+++...+ .....+|++|.+.-..+..
T Consensus 196 ~L~~~Q~~av~~~------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~------------~~~~~IL~ltft~~AA~em 257 (684)
T PRK11054 196 PLNPSQARAVVNG------EDSLLVLAGAGSGKTSVLVARAGWLLARGQ------------AQPEQILLLAFGRQAAEEM 257 (684)
T ss_pred CCCHHHHHHHhCC------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCC------------CCHHHeEEEeccHHHHHHH
Confidence 5788899999631 234455556899999999999988875432 2356799999988877766
Q ss_pred HH-HHHh
Q 044036 216 IE-FSRW 221 (875)
Q Consensus 216 ~E-~~k~ 221 (875)
.| +...
T Consensus 258 ~eRL~~~ 264 (684)
T PRK11054 258 DERIRER 264 (684)
T ss_pred HHHHHHh
Confidence 55 4443
No 349
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=71.88 E-value=25 Score=42.25 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=56.7
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcCCcEEEEeCCChhH
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDM 236 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~~~v~v~~G~~r~~ 236 (875)
..+|.-..|+|||..+.++...+... .....++.+.-..++..+...+.. + ....
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~--------------~~g~~V~Yitaeef~~el~~al~~----------~-~~~~ 370 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRL--------------YPGTRVRYVSSEEFTNEFINSIRD----------G-KGDS 370 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHh--------------CCCCeEEEeeHHHHHHHHHHHHHh----------c-cHHH
Confidence 35788899999999988888776421 123345555544555555443321 0 0000
Q ss_pred HHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCccc---HHHHHHHhcc-ccceEEeecCC
Q 044036 237 ILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKS---KLYMACLELK-TRNRIGLTGTI 305 (875)
Q Consensus 237 ~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S---~~~kal~~l~-~~~rllLTGTP 305 (875)
+. ..+ ...++||||+.|.+.+... .++..+..+. ....+++|+.-
T Consensus 371 -------------------f~---~~y--~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 371 -------------------FR---RRY--REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred -------------------HH---HHh--hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 11 001 1358999999999977543 2344444443 34557777753
No 350
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=71.27 E-value=28 Score=35.05 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=22.1
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
.-++.-+.|.|||-.+..++..++..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34678899999999999999988754
No 351
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=71.23 E-value=15 Score=40.86 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhCCC--Cc-EEecCCCCchHHHHHHHHHHHhcCC
Q 044036 139 EHQREGVKFLYKLYKNKH--GG-ILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 139 pyQ~~gv~~l~~~~~~~~--gg-ILaDemGLGKTiqaiall~~l~~~~ 183 (875)
-.|...+..+...+..++ .+ ++.-+.|.|||..+..++..++...
T Consensus 9 ~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~ 56 (329)
T PRK08058 9 ALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLE 56 (329)
T ss_pred hhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 346666666666665552 33 7889999999999999999987653
No 352
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=71.14 E-value=28 Score=31.08 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=38.1
Q ss_pred CCCeEEEEecc------hhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcC
Q 044036 531 KGDKILLFSYS------VRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNS 580 (875)
Q Consensus 531 ~g~KVLIFs~~------~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~ 580 (875)
..++|+||+.. -.....+..+|...|++|..+|=....+.|+.+......
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~ 65 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW 65 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC
Confidence 45799999863 456778999999999999999876666677776665544
No 353
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=71.02 E-value=12 Score=44.10 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.0
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l 179 (875)
..+|.+|.-++|.|||..+-+++..+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhh
Confidence 34688899999999999988887766
No 354
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=70.99 E-value=12 Score=37.89 Aligned_cols=108 Identities=18% Similarity=0.087 Sum_probs=0.0
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcCCcEEEEeCCChhHHH
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDMIL 238 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~~~v~v~~G~~r~~~~ 238 (875)
++.-.|++|||..-|-.+..+ .....+++|..|..=-.--..++....+.+.-...=.....+.
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~----------------~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~ 71 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRY----------------KEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIF 71 (201)
T ss_pred EEEccCcCcchHHHHHHHHHH----------------HHcCCeEEEEecccccccccceeeeccCCcccceecCChHHHH
Q ss_pred HHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhccc--cceEEeec
Q 044036 239 EKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKT--RNRIGLTG 303 (875)
Q Consensus 239 ~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~--~~rllLTG 303 (875)
..+..... ....++|.|||||-+ +......+.++.. ..++++.|
T Consensus 72 ~~i~~~~~------------------~~~~~~v~IDEaQF~---~~~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 72 DEIAALHE------------------KPPVDCVLIDEAQFF---DEELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred HHHHhccc------------------CCCcCEEEEehhHhC---CHHHHHHHHHHHhhcCCEEEEec
No 355
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=70.93 E-value=27 Score=40.95 Aligned_cols=131 Identities=14% Similarity=0.065 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhCC------CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHH
Q 044036 139 EHQREGVKFLYKLYKNK------HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQ 212 (875)
Q Consensus 139 pyQ~~gv~~l~~~~~~~------~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~ 212 (875)
|+|+..+..++.. ... +-++|.-.=|-|||..+.++..+.+--.+ ....-++++++..-..
T Consensus 1 PwQ~fi~~~i~G~-~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g------------~~~~~i~~~A~~~~QA 67 (477)
T PF03354_consen 1 PWQKFILRSIFGW-RKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG------------EPGAEIYCAANTRDQA 67 (477)
T ss_pred CcHHHHHHHHhce-EcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC------------ccCceEEEEeCCHHHH
Confidence 6788777766643 211 34566667899999988777665442111 1233467777753221
Q ss_pred H-HHHHHHHhcC----CcEEEEeCCChhHHHHHHHhCCceEEEee-cc---cccccccccccccccEEEEcCCccccCcc
Q 044036 213 N-WEIEFSRWST----FNVSIYHGPNRDMILEKLEACGVEVLITS-FD---SYRIHGSILSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 213 q-W~~E~~k~~~----~~v~v~~G~~r~~~~~~~~~~~~~VvItT-y~---~l~~~~~~l~~~~w~~VIiDEAH~ikn~~ 283 (875)
. =-+++..... +.. ..+ .. ........|.... -. .+..+...+...+.+++|+||+|..++.
T Consensus 68 ~~~f~~~~~~i~~~~~l~~--~~~---~~---~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~- 138 (477)
T PF03354_consen 68 KIVFDEAKKMIEASPELRK--RKK---PK---IIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD- 138 (477)
T ss_pred HHHHHHHHHHHHhChhhcc--chh---hh---hhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH-
Confidence 1 1122332221 110 000 00 0011111233221 11 2234456677778999999999999763
Q ss_pred cHHHHHHHh
Q 044036 284 SKLYMACLE 292 (875)
Q Consensus 284 S~~~kal~~ 292 (875)
..+.++..
T Consensus 139 -~~~~~l~~ 146 (477)
T PF03354_consen 139 -ELYDALES 146 (477)
T ss_pred -HHHHHHHh
Confidence 35555544
No 356
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=70.83 E-value=9.2 Score=43.14 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=20.7
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
..|.+|.-+.|+|||..+-++...+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999988887654
No 357
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=70.82 E-value=12 Score=39.28 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=34.0
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHh
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW 221 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~ 221 (875)
.-.++.-+.|+|||..+..|+..... ...+++.|.=..-.....+.+..+
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~----------------~g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALK----------------QGKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHh----------------CCCEEEEEEcCCCHHHHHHHHHHC
Confidence 33467889999999999999876532 345677777554455555555554
No 358
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.27 E-value=84 Score=38.15 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..+...+..+ +.-|+.-+.|.|||..+..+...+...
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 555566555555554 234788999999999888888877543
No 359
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=70.17 E-value=4.7 Score=43.07 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=17.6
Q ss_pred CCcEEecCCCCchHHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l 179 (875)
..++|.-..|||||-.|--++..+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh
Confidence 356889999999998765554443
No 360
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=70.09 E-value=12 Score=45.81 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=67.8
Q ss_pred CcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEE
Q 044036 511 DVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR-KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLI 589 (875)
Q Consensus 511 ~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~-~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~Li 589 (875)
.+..|||.++..+++.+..+.|+.+||-..-+.....+...|.. .|.++..++++.+..+|...-.+..++.. + ++|
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~-~-vVI 301 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA-R-VVI 301 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc-e-EEE
Confidence 36779999999999999999999999999998887777777765 48999999999999999999999988754 4 444
Q ss_pred ecCC
Q 044036 590 STRA 593 (875)
Q Consensus 590 St~a 593 (875)
-|+.
T Consensus 302 GtRS 305 (730)
T COG1198 302 GTRS 305 (730)
T ss_pred Eech
Confidence 4444
No 361
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=70.05 E-value=18 Score=45.69 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhC--CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 141 QREGVKFLYKLYKN--KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 141 Q~~gv~~l~~~~~~--~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
|..-++.++..+.. ..+.||.-+.|.|||..+-+++..+.
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 44457777765433 35677888999999999988877663
No 362
>PHA00350 putative assembly protein
Probab=69.84 E-value=8.8 Score=43.55 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=12.0
Q ss_pred cEEEEcCCccccCc
Q 044036 269 EIVIVDEAHRLKNE 282 (875)
Q Consensus 269 ~~VIiDEAH~ikn~ 282 (875)
.+|||||||++-+.
T Consensus 83 aLIViDEaq~~~p~ 96 (399)
T PHA00350 83 ALYVIDEAQMIFPK 96 (399)
T ss_pred CEEEEECchhhcCC
Confidence 59999999998664
No 363
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=69.69 E-value=21 Score=39.27 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=62.0
Q ss_pred CCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcC-CcEEEEeCCChhHHHHHHHh
Q 044036 165 GLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEA 243 (875)
Q Consensus 165 GLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~-~~v~v~~G~~r~~~~~~~~~ 243 (875)
|+|||=.++.++..+..++- .-..+.+.-+....+...+|.+.+....--+|-..... ..+.++-|.+|......+..
T Consensus 40 GTGKTP~v~~La~~l~~~G~-~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~a~~~~~~ 118 (311)
T TIGR00682 40 GTGKTPVVVWLAELLKDRGL-RVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHATVVASKDRKDAILLILE 118 (311)
T ss_pred CcChHHHHHHHHHHHHHCCC-EEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCCcEEEeChHHHHHHHHHh
Confidence 99999999999987765432 11122222222234556777776643332233221111 24667777777766555543
Q ss_pred -CCceEEEeecccccccccccccccccEEEEcCCccccC
Q 044036 244 -CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 244 -~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn 281 (875)
.+++|+|.-=. |+. ..| ..+.++|++|-..-+.|
T Consensus 119 ~~~~dviilDDG-fQh--~~l-~rD~~IvlvD~~~~fgn 153 (311)
T TIGR00682 119 QLDPDVIILDDG-LQH--RKL-HRDVEIVVVDGQRPFGN 153 (311)
T ss_pred cCCCCEEEECCC-CcC--ccc-cCCeEEEEECCCCCCCC
Confidence 36788776322 110 001 13678999997665555
No 364
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=69.47 E-value=92 Score=34.46 Aligned_cols=130 Identities=17% Similarity=0.156 Sum_probs=68.9
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHH
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEI 216 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~ 216 (875)
+-+.|.+ ||......+.+.+++-.+|+|||-..-+++..+... ....++++|-...
T Consensus 133 ~~~~~~~---~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~--------------~~~~rivtIEd~~------- 188 (319)
T PRK13894 133 MTAAQRE---AIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQ--------------DPTERVFIIEDTG------- 188 (319)
T ss_pred CCHHHHH---HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhc--------------CCCceEEEEcCCC-------
Confidence 3344544 455555567788899999999997777777654211 1223444444332
Q ss_pred HHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhcccc
Q 044036 217 EFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTR 296 (875)
Q Consensus 217 E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~ 296 (875)
|+.- ...++.-+.... + .++..+ .......++|++|+.|.- ......++..+++-
T Consensus 189 El~~-~~~~~v~~~~~~-------------~---~~~~~l---l~~aLR~~PD~IivGEiR-----~~Ea~~~l~A~~tG 243 (319)
T PRK13894 189 EIQC-AAENYVQYHTSI-------------D---VNMTAL---LKTTLRMRPDRILVGEVR-----GPEALDLLMAWNTG 243 (319)
T ss_pred cccc-CCCCEEEEecCC-------------C---CCHHHH---HHHHhcCCCCEEEEeccC-----CHHHHHHHHHHHcC
Confidence 1110 001111111100 0 011111 112224688999999973 23455667777776
Q ss_pred ceEEeecCCCCCCHHHHHHH
Q 044036 297 NRIGLTGTIMQNKIMELYNL 316 (875)
Q Consensus 297 ~rllLTGTPiqN~~~El~~L 316 (875)
+.-.+ +|-.-|+..+...-
T Consensus 244 h~G~~-tTiHa~s~~~ai~R 262 (319)
T PRK13894 244 HEGGA-ATLHANNAKAGLDR 262 (319)
T ss_pred CCceE-EEECCCCHHHHHHH
Confidence 65433 57777887775543
No 365
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=69.20 E-value=54 Score=35.33 Aligned_cols=126 Identities=15% Similarity=0.149 Sum_probs=62.7
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC----cchHHHHHHHHHHhcCCcEEEEeCC
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP----SSVIQNWEIEFSRWSTFNVSIYHGP 232 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P----~sLl~qW~~E~~k~~~~~v~v~~G~ 232 (875)
...+.-..|.|||..+..++..+.. ...++.+|.- ...+.||...... .++.+ +...
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~----------------~~~~v~~i~~D~~ri~~~~ql~~~~~~-~~~~~--~~~~ 137 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHG----------------KKKTVGFITTDHSRIGTVQQLQDYVKT-IGFEV--IAVR 137 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH----------------cCCeEEEEecCCCCHHHHHHHHHHhhh-cCceE--EecC
Confidence 3346667999999987777665532 1234555554 2466777643332 12222 2211
Q ss_pred ChhHHHHHHHhCCceEEEeeccccccccccccc-ccccEEEEcCCccccCcccHHH---HHHHhccc-cceEEeecCCCC
Q 044036 233 NRDMILEKLEACGVEVLITSFDSYRIHGSILSE-VNWEIVIVDEAHRLKNEKSKLY---MACLELKT-RNRIGLTGTIMQ 307 (875)
Q Consensus 233 ~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~-~~w~~VIiDEAH~ikn~~S~~~---kal~~l~~-~~rllLTGTPiq 307 (875)
........ ...+.. .++++||+|-+=+.-.....+. +.+..... ...+.|+||--.
T Consensus 138 ~~~~l~~~-------------------l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 138 DEAAMTRA-------------------LTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred CHHHHHHH-------------------HHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 11111111 111211 2578999999876533222221 22222222 234678888766
Q ss_pred CCHHHHHHHHhhh
Q 044036 308 NKIMELYNLFDWV 320 (875)
Q Consensus 308 N~~~El~~Ll~~l 320 (875)
+...+....++-+
T Consensus 199 ~d~~~~~~~f~~~ 211 (270)
T PRK06731 199 KDMIEIITNFKDI 211 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 6666655554443
No 366
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=69.14 E-value=12 Score=42.83 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=34.1
Q ss_pred ccCCchhhhcccHH---HHHHHHHHHHH-------hh-----------CCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 127 IQVPASINCRLLEH---QREGVKFLYKL-------YK-----------NKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 127 ~~vP~~i~~~L~py---Q~~gv~~l~~~-------~~-----------~~~ggILaDemGLGKTiqaiall~~l 179 (875)
+.-|..|...|..| |..+++-+... .. ...+.+|.-++|+|||..|=++...+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 34566677777766 66665544211 11 12456788999999999988876543
No 367
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=68.99 E-value=5.6 Score=45.38 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=20.9
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~ 178 (875)
...|.+|.-+.|+|||..+-+++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3578899999999999998877654
No 368
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=68.99 E-value=12 Score=44.06 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=43.3
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW 214 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW 214 (875)
.++.+-|-+.+++ ..+.-.|+--..|+|||-.|+.=+++++... ......+++||+.|..+....
T Consensus 211 ~TIQkEQneIIR~-----ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~----------R~~l~~k~vlvl~PN~vFleY 275 (747)
T COG3973 211 ETIQKEQNEIIRF-----EKNKILVVQGAAGSGKTTIALHRVAYLLYGY----------RGPLQAKPVLVLGPNRVFLEY 275 (747)
T ss_pred HHhhHhHHHHHhc-----cCCCeEEEecCCCCCchhHHHHHHHHHHhcc----------ccccccCceEEEcCcHHHHHH
Confidence 3444555555543 1222234566789999999998877776432 123456789999999887665
Q ss_pred HH
Q 044036 215 EI 216 (875)
Q Consensus 215 ~~ 216 (875)
..
T Consensus 276 is 277 (747)
T COG3973 276 IS 277 (747)
T ss_pred HH
Confidence 43
No 369
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=68.89 E-value=36 Score=46.90 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=74.9
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH-
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN- 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q- 213 (875)
..|-+-|+++|.-++.. ...-.||--..|+|||-++-+++..+- .....+++++|+.-..+
T Consensus 428 ~~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~l~~l~~~~~----------------~~G~~V~~lAPTgrAA~~ 489 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEIAQLLLHLAS----------------EQGYEIQIITAGSLSAQE 489 (1960)
T ss_pred CCCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHHHHH----------------hcCCeEEEEeCCHHHHHH
Confidence 46889999999877651 224456667789999988777665542 13467999999875443
Q ss_pred HHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhc
Q 044036 214 WEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL 293 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l 293 (875)
..++...-.. .-...+..+... . ...|...|......+ ..-++||||||..+-. ......+...
T Consensus 490 L~e~~g~~A~---------Ti~~~l~~l~~~--~-~~~tv~~fl~~~~~l--~~~~vlIVDEAsMl~~--~~~~~Ll~~a 553 (1960)
T TIGR02760 490 LRQKIPRLAS---------TFITWVKNLFND--D-QDHTVQGLLDKSSPF--SNKDIFVVDEANKLSN--NELLKLIDKA 553 (1960)
T ss_pred HHHHhcchhh---------hHHHHHHhhccc--c-cchhHHHhhcccCCC--CCCCEEEEECCCCCCH--HHHHHHHHHH
Confidence 3333211000 000000000000 0 000101111111111 2458999999998833 2344444434
Q ss_pred -cccceEEeecCCCCCC
Q 044036 294 -KTRNRIGLTGTIMQNK 309 (875)
Q Consensus 294 -~~~~rllLTGTPiqN~ 309 (875)
....+++|-|=+-|..
T Consensus 554 ~~~garvVlvGD~~QL~ 570 (1960)
T TIGR02760 554 EQHNSKLILLNDSAQRQ 570 (1960)
T ss_pred hhcCCEEEEEcChhhcC
Confidence 4668888877765543
No 370
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=68.67 E-value=2.8 Score=52.73 Aligned_cols=122 Identities=26% Similarity=0.340 Sum_probs=109.8
Q ss_pred CeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCC
Q 044036 533 DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPN 612 (875)
Q Consensus 533 ~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~ 612 (875)
.|||+||++...+|.++..+..+++.+.+..++ ++-...+..|.+ +.+||+-+..|+-||||..|.||++.+|-
T Consensus 1222 ekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1222 EKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred ceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc---ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 599999999999999999999999997555543 345668888875 67899999999999999999999999999
Q ss_pred CCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 044036 613 WNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLS 660 (875)
Q Consensus 613 WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~ 660 (875)
-||..+.||+||+|||||++++.||+|+..+|+||.|+.....|....
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l 1343 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETL 1343 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHH
Confidence 999999999999999999999999999999999999999887776543
No 371
>PRK10865 protein disaggregation chaperone; Provisional
Probab=67.95 E-value=23 Score=44.81 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhh--CCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 142 REGVKFLYKLYK--NKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 142 ~~gv~~l~~~~~--~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
..-++.++..+. ...+.||.-+.|.|||..+-+++..+.
T Consensus 184 ~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 184 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 334666666443 345778888999999999988887664
No 372
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=67.56 E-value=22 Score=35.05 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=32.9
Q ss_pred ccccccccEEEEcCCccccC----cccHHHHHHHhccccceEEeecCCCCCCHHHH
Q 044036 262 ILSEVNWEIVIVDEAHRLKN----EKSKLYMACLELKTRNRIGLTGTIMQNKIMEL 313 (875)
Q Consensus 262 ~l~~~~w~~VIiDEAH~ikn----~~S~~~kal~~l~~~~rllLTGTPiqN~~~El 313 (875)
.+....+|+||+||.=..-+ ........+..-....-+.|||--.+..+.|+
T Consensus 90 ~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 90 AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 34456799999999766533 22345555555556667999998554444333
No 373
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=67.46 E-value=32 Score=38.21 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHHHHhhCCCCc-EEecCCCCchHHHHHHHHHHHhcCC
Q 044036 137 LLEHQREGVKFLYKLYKNKHGG-ILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~gg-ILaDemGLGKTiqaiall~~l~~~~ 183 (875)
++|+|...-+-+......-..+ |+.-+.|.|||..|..+...++...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~ 49 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCET 49 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 3666666666666554333333 5788999999999999999988643
No 374
>PHA02244 ATPase-like protein
Probab=67.08 E-value=48 Score=37.36 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=22.3
Q ss_pred hCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 153 KNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 153 ~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
..+...+|--++|+|||..+-++...+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 347788999999999999988877653
No 375
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=66.68 E-value=1.1e+02 Score=31.70 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=24.4
Q ss_pred cccEEEEcCCccccCccc---HHHHHHHhc-cccceEEeec
Q 044036 267 NWEIVIVDEAHRLKNEKS---KLYMACLEL-KTRNRIGLTG 303 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S---~~~kal~~l-~~~~rllLTG 303 (875)
..+++|||..|.+.+... .....+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 469999999999987532 233333333 3456777777
No 376
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=66.46 E-value=9.5 Score=47.38 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWE 215 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~ 215 (875)
..|.+|.-+.|+|||..|-++...+ ..+++.|-++.++..|.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~-------------------~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES-------------------GANFIAVRGPEILSKWV 528 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc-------------------CCCEEEEehHHHhhccc
Confidence 4577889999999999988887653 23466666666666663
No 377
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=65.87 E-value=12 Score=38.77 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=26.4
Q ss_pred cccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCH
Q 044036 267 NWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKI 310 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~ 310 (875)
..+.+||||++.+-. .... .+..+.....+.|-|=|.|-.+
T Consensus 62 ~~~~liiDE~~~~~~--g~l~-~l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPP--GYLL-LLLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCCh--HHHH-HHHhhccCcceEEEECchhccC
Confidence 478999999998733 1222 2444444446777798887543
No 378
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=65.86 E-value=20 Score=38.36 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=19.1
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
+++-+.|+|||..++.|+....
T Consensus 40 lI~G~pGtGKT~l~~qf~~~~a 61 (259)
T TIGR03878 40 NITGVSDTGKSLMVEQFAVTQA 61 (259)
T ss_pred EEEcCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999988754
No 379
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=65.52 E-value=7.8 Score=38.97 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=22.9
Q ss_pred hCCCCcEEecCCCCchHHHHHHHHHHHhc
Q 044036 153 KNKHGGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 153 ~~~~ggILaDemGLGKTiqaiall~~l~~ 181 (875)
..+.|.+|.-.+|.|||..|.+++..+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 35677788889999999999999988753
No 380
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.35 E-value=7.3 Score=43.31 Aligned_cols=21 Identities=19% Similarity=0.010 Sum_probs=15.6
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~ 180 (875)
+.-=.|.|||.++.-++.++.
T Consensus 106 fVGLqG~GKTTtc~KlA~y~k 126 (483)
T KOG0780|consen 106 FVGLQGSGKTTTCTKLAYYYK 126 (483)
T ss_pred EEeccCCCcceeHHHHHHHHH
Confidence 455569999988877777663
No 381
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.26 E-value=99 Score=37.87 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=22.3
Q ss_pred hCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 153 KNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 153 ~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
+++.|.+|--..|+|||+.|=|++..+
T Consensus 703 rkRSGILLYGPPGTGKTLlAKAVATEc 729 (953)
T KOG0736|consen 703 RKRSGILLYGPPGTGKTLLAKAVATEC 729 (953)
T ss_pred cccceeEEECCCCCchHHHHHHHHhhc
Confidence 345677899999999999999988754
No 382
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=65.18 E-value=28 Score=38.80 Aligned_cols=39 Identities=28% Similarity=0.197 Sum_probs=26.0
Q ss_pred HHHHHHHHHHH-hhCC-CCcEEecCCCCchHHHHHHHHHHH
Q 044036 141 QREGVKFLYKL-YKNK-HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 141 Q~~gv~~l~~~-~~~~-~ggILaDemGLGKTiqaiall~~l 179 (875)
|.+.+.-|+-. ...+ .+.+|..+.|+|||..+=++...+
T Consensus 9 q~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 9 QDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 55556554333 3333 455789999999999877776554
No 383
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=64.96 E-value=25 Score=36.79 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=32.7
Q ss_pred CCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcE-EEEc-CcchHHHHHHHHHHhcC--CcEEEEeCCC
Q 044036 165 GLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYV-LIIC-PSSVIQNWEIEFSRWST--FNVSIYHGPN 233 (875)
Q Consensus 165 GLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~-LIV~-P~sLl~qW~~E~~k~~~--~~v~v~~G~~ 233 (875)
|.|||-.++++...+..+ ..++ ||=| |..-+..|.+-..+-.. -.+.|+.+..
T Consensus 12 GaGKTT~~~~LAs~la~~----------------G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e 68 (231)
T PF07015_consen 12 GAGKTTAAMALASELAAR----------------GARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADE 68 (231)
T ss_pred CCcHHHHHHHHHHHHHHC----------------CCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccc
Confidence 899999999998888533 2334 4444 55567799765544332 2345555443
No 384
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=64.72 E-value=35 Score=37.81 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=59.7
Q ss_pred CCchHHHHHHHHHHHhcCCCCCcchhhcccccCC-CCcEEEEcCcchHHHHHHHHHHhcC-CcEEEEeCCChhHHHHHHH
Q 044036 165 GLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDK-KGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLE 242 (875)
Q Consensus 165 GLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~-~~~~LIV~P~sLl~qW~~E~~k~~~-~~v~v~~G~~r~~~~~~~~ 242 (875)
|+|||=.++.++..+..++ ..-..+.+.-+... .++ .+|.+.+-..+--+|--.... ..+.++-|.+|......+.
T Consensus 61 GtGKTP~v~~L~~~l~~~g-~~~~ilsRGYg~~~~~~~-~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~~~~~~~ 138 (325)
T PRK00652 61 GTGKTPVVIALAEQLQARG-LKPGVVSRGYGGKLEKGP-LLVDPDHTAAEVGDEPLLIARRTGAPVAVSPDRVAAARALL 138 (325)
T ss_pred CCChHHHHHHHHHHHHHCC-CeEEEECCCCCCCcCCCC-EEeCCCCChhhhCcHHHHhccCCCceEEEcCcHHHHHHHHH
Confidence 9999999999998775443 21112222111122 333 566775543333334322222 2567777888776655554
Q ss_pred hC-CceEEEee--cccccccccccccccccEEEEcCCccccC
Q 044036 243 AC-GVEVLITS--FDSYRIHGSILSEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 243 ~~-~~~VvItT--y~~l~~~~~~l~~~~w~~VIiDEAH~ikn 281 (875)
.. +++|+|.- ++..+. ..+.++|++|-..-+.|
T Consensus 139 ~~~~~dviilDDGfQh~~l------~rdl~Ivl~d~~~~fgn 174 (325)
T PRK00652 139 AAHGADIIILDDGLQHYRL------ARDIEIVVVDGQRGFGN 174 (325)
T ss_pred hcCCCCEEEEcCCccCccc------CCCeEEEEECCCCCCCC
Confidence 43 67777763 222211 13567888887666655
No 385
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=64.48 E-value=25 Score=43.66 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=19.7
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
+.|.+|.-+.|+|||..+-++...+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh
Confidence 4677899999999998877765543
No 386
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=64.32 E-value=26 Score=40.74 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=35.1
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW 221 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~ 221 (875)
-.+|+-++|.|||..++.++..+.. ..+++|.|....-..|+.....++
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~----------------~g~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAK----------------NQMKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh----------------cCCcEEEEECcCCHHHHHHHHHHc
Confidence 3368899999999999998876632 235688888766566665555444
No 387
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=64.25 E-value=53 Score=40.64 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=18.6
Q ss_pred CCcEEecCCCCchHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~ 178 (875)
...||.-+.|+|||..+-++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35688999999999888777654
No 388
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=63.89 E-value=32 Score=30.14 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=39.7
Q ss_pred CCCeEEEEecc------hhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 531 KGDKILLFSYS------VRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 531 ~g~KVLIFs~~------~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
+.++|+||+.. -.....+..+|...|++|..++=....+.|+.+.+ ........+++|.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~-~~g~~tvP~vfi~ 70 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE-YSNWPTFPQLYVN 70 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH-HhCCCCCCEEEEC
Confidence 45799999873 45677889999999999999986555555554444 3333343344444
No 389
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=63.79 E-value=29 Score=39.67 Aligned_cols=32 Identities=19% Similarity=0.000 Sum_probs=24.6
Q ss_pred HHHHHhhCCCCcEEecCCCCchHHHHHHHHHH
Q 044036 147 FLYKLYKNKHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 147 ~l~~~~~~~~ggILaDemGLGKTiqaiall~~ 178 (875)
-|+.....+.+.|+--+.|+|||..+.++..+
T Consensus 201 rl~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 201 RLLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred hhHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 33344556889999999999999888876655
No 390
>CHL00095 clpC Clp protease ATP binding subunit
Probab=63.38 E-value=27 Score=44.03 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=21.6
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
..+.||.-+.|.|||..+-+++..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45778999999999999988877663
No 391
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=62.75 E-value=5.6 Score=39.87 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=21.7
Q ss_pred cccEEEEcCCccccCcccHHHHHHHhccccceEEeecCC
Q 044036 267 NWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTI 305 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTP 305 (875)
.+|++|||||=-|- ......-+....|+++|.|-
T Consensus 90 ~~DlliVDEAAaIp-----~p~L~~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 90 QADLLIVDEAAAIP-----LPLLKQLLRRFPRVVFSTTI 123 (177)
T ss_dssp --SCEEECTGGGS------HHHHHHHHCCSSEEEEEEEB
T ss_pred CCCEEEEechhcCC-----HHHHHHHHhhCCEEEEEeec
Confidence 46999999997772 22222224577889998884
No 392
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=62.41 E-value=24 Score=41.61 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.1
Q ss_pred CCCcEEecCCCCchHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~ 178 (875)
..|.+|.-++|+|||..+=+++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999998887654
No 393
>PRK10824 glutaredoxin-4; Provisional
Probab=62.31 E-value=38 Score=31.44 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=42.7
Q ss_pred CCCeEEEEecc------hhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCC-ceEEEEecCCcc
Q 044036 531 KGDKILLFSYS------VRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPS-KQVFLISTRAGG 595 (875)
Q Consensus 531 ~g~KVLIFs~~------~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~-~~v~LiSt~agg 595 (875)
..++|+||+.. -.........|...|+.|..++=....+.|. .+..+..-+. ++||+=..-.||
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGELVGG 83 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCEEEcC
Confidence 35799999984 4578888899999998887776555544444 4555544444 355665555555
No 394
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=61.73 E-value=66 Score=38.29 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=31.8
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFS 219 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~ 219 (875)
..|.+|+-+.|.|||+.|=|++... .-.++=|=-+.|+..|.-|=+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa-------------------g~NFisVKGPELlNkYVGESE 590 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA-------------------GANFISVKGPELLNKYVGESE 590 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc-------------------cCceEeecCHHHHHHHhhhHH
Confidence 4688899999999999988876532 222444444667777764433
No 395
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=61.53 E-value=32 Score=37.27 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=17.9
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
++.-..|.|||.++..++.++.
T Consensus 198 ~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 198 ALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999988887764
No 396
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=61.08 E-value=40 Score=42.85 Aligned_cols=95 Identities=9% Similarity=0.095 Sum_probs=66.8
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEE
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR----KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVF 587 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~ 587 (875)
...|||..+....+-.....|.+++|.+..+..+.-....|.. .++++..++|.++..++.++++.+.++. .. +
T Consensus 480 dTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~-~d-I 557 (926)
T TIGR00580 480 DVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK-ID-I 557 (926)
T ss_pred CCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC-ce-E
Confidence 4568998765544444445688999999999888776665554 4778889999999999999999888753 33 4
Q ss_pred EEecC-CcccccCCCCCCEEEE
Q 044036 588 LISTR-AGGLGLNLVSANRVVI 608 (875)
Q Consensus 588 LiSt~-agg~GLNL~~An~VI~ 608 (875)
+|.|. .....+.+.....||+
T Consensus 558 VIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 558 LIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred EEchHHHhhCCCCcccCCEEEe
Confidence 45544 3334456666666655
No 397
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=60.95 E-value=39 Score=46.67 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=71.2
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW 214 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW 214 (875)
..|-+-|++++..++.. ..+.+++--..|+|||.+..+++..+.... ......++.++|++-..+=
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~------------~~~g~~v~glApT~~Aa~~ 1083 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAF------------ESEQLQVIGLAPTHEAVGE 1083 (1960)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHH------------HhcCCeEEEEeChHHHHHH
Confidence 47899999999987551 223445556779999998855443332100 1124567888998654332
Q ss_pred HHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhc-
Q 044036 215 EIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL- 293 (875)
Q Consensus 215 ~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l- 293 (875)
|.. . |-... .+..+.. .......... ....+++|||||-.+.+. .....+...
T Consensus 1084 ---L~~-~--------g~~a~-Ti~s~l~--------~~~~~~~~~~---~~~~~v~ivDEasMv~~~--~~~~l~~~~~ 1137 (1960)
T TIGR02760 1084 ---LKS-A--------GVQAQ-TLDSFLT--------DISLYRNSGG---DFRNTLFILDESSMVSNF--QLTHATELVQ 1137 (1960)
T ss_pred ---HHh-c--------CCchH-hHHHHhc--------CcccccccCC---CCcccEEEEEccccccHH--HHHHHHHhcc
Confidence 221 1 11111 1111110 0000111111 234589999999988543 344444443
Q ss_pred cccceEEeecCCCC
Q 044036 294 KTRNRIGLTGTIMQ 307 (875)
Q Consensus 294 ~~~~rllLTGTPiq 307 (875)
....+++|.|=+-|
T Consensus 1138 ~~~ak~vlvGD~~Q 1151 (1960)
T TIGR02760 1138 KSGSRAVSLGDIAQ 1151 (1960)
T ss_pred CCCCEEEEeCChhh
Confidence 45688999887643
No 398
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.31 E-value=72 Score=36.71 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=31.0
Q ss_pred cccEEEEcCCccccCcccHHHHHHHhc-----cccceEEeecCCCCCCHHHHHHHHhhhCC
Q 044036 267 NWEIVIVDEAHRLKNEKSKLYMACLEL-----KTRNRIGLTGTIMQNKIMELYNLFDWVAP 322 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S~~~kal~~l-----~~~~rllLTGTPiqN~~~El~~Ll~~l~p 322 (875)
+++.|+||.+=+..+ .......+..+ .....|.|++|--.+.+.++..-+.-+..
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 457888888633322 22233333333 22445789999777777766655554443
No 399
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=60.14 E-value=23 Score=40.30 Aligned_cols=91 Identities=19% Similarity=0.291 Sum_probs=63.7
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEec-chhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecC
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSY-SVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTR 592 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~-~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ 592 (875)
.++-|.++...+-.+.+.|++||+... |-.+..++...|.+.|+.+..+|.........++.. ++
T Consensus 84 fsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-----~~--------- 149 (396)
T COG0626 84 FSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE-----PN--------- 149 (396)
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-----cC---------
Confidence 456788888877777778999998877 777889999999999999999988765433333322 22
Q ss_pred CcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccC
Q 044036 593 AGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFG 629 (875)
Q Consensus 593 agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiG 629 (875)
.++|+++.|-||....+=|.++.|+.
T Consensus 150 -----------tk~v~lEtPsNP~l~v~DI~~i~~~A 175 (396)
T COG0626 150 -----------TKLVFLETPSNPLLEVPDIPAIARLA 175 (396)
T ss_pred -----------ceEEEEeCCCCcccccccHHHHHHHH
Confidence 35666677777766665555544443
No 400
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.65 E-value=28 Score=39.57 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcC-CcEEEEeCCChhHHHHHHHh
Q 044036 165 GLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEA 243 (875)
Q Consensus 165 GLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~-~~v~v~~G~~r~~~~~~~~~ 243 (875)
|+|||.++.=++.++ .....++|+||--.--.--.++++..+. ..+.+|.-.......+-...
T Consensus 110 GsGKTTt~~KLA~~l----------------kk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~ 173 (451)
T COG0541 110 GSGKTTTAGKLAKYL----------------KKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKA 173 (451)
T ss_pred CCChHhHHHHHHHHH----------------HHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHH
Q ss_pred CCceEEEeecccccccccccccccccEEEEcCCccccCcccHHH--HHHHhccccceEEe
Q 044036 244 CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLY--MACLELKTRNRIGL 301 (875)
Q Consensus 244 ~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~--kal~~l~~~~rllL 301 (875)
+ ...+....+|+||+|=|-|+.-...... +.+...-.+.-++|
T Consensus 174 a---------------l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~ll 218 (451)
T COG0541 174 A---------------LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLL 218 (451)
T ss_pred H---------------HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEE
No 401
>PHA00012 I assembly protein
Probab=59.44 E-value=23 Score=38.90 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=17.4
Q ss_pred ecCCCCchHHHHHHHHHHHhcCC
Q 044036 161 GDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 161 aDemGLGKTiqaiall~~l~~~~ 183 (875)
---+|.|||+.+++-+...+.++
T Consensus 7 TGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 7 TGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred ecCCCCCchHHHHHHHHHHHHcC
Confidence 34579999999998777766443
No 402
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=59.26 E-value=26 Score=43.48 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhh--CCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 142 REGVKFLYKLYK--NKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 142 ~~gv~~l~~~~~--~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.+-+..++..+. ...+.||.-+.|.|||..+-++...+.
T Consensus 188 ~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 188 EDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred HHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 333444554433 345778888999999999888887764
No 403
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=59.09 E-value=14 Score=44.01 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=36.2
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
++++.|.+-.+-+++-+..|+=||+-.++|+|||+..|.....++
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 455669888888888888999999999999999999775555444
No 404
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=59.07 E-value=41 Score=38.85 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=66.7
Q ss_pred CCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHHHHHHHHHhc-------C--CcEEEEe---C
Q 044036 165 GLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQNWEIEFSRWS-------T--FNVSIYH---G 231 (875)
Q Consensus 165 GLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~qW~~E~~k~~-------~--~~v~v~~---G 231 (875)
|+|||+.-..=++.+..+ ++..+++|-|=+.. ..+.+.-+.+|+ | -+..+.| |
T Consensus 186 GSGKT~~La~Kaa~lh~k--------------nPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG 251 (660)
T COG3972 186 GSGKTELLAHKAAELHSK--------------NPDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGG 251 (660)
T ss_pred CCCchhHHHHHHHHHhcC--------------CCCceEEEEeehHHHHHHHHHHHHHHHHHHhhcCCCccceEEEeccCC
Confidence 999998766656555433 35677888887544 444444333332 1 2333433 3
Q ss_pred CChhHHHHHHHhCCceEEEeeccccccc-----cccc----ccccccEEEEcCCccccCcccHHHHHHHhc-cccceEEe
Q 044036 232 PNRDMILEKLEACGVEVLITSFDSYRIH-----GSIL----SEVNWEIVIVDEAHRLKNEKSKLYMACLEL-KTRNRIGL 301 (875)
Q Consensus 232 ~~r~~~~~~~~~~~~~VvItTy~~l~~~-----~~~l----~~~~w~~VIiDEAH~ikn~~S~~~kal~~l-~~~~rllL 301 (875)
.++.-....... .++..=.+|.-+... .+.+ +.--+|+|.|||++-+ +. ..++.|..+ +...||.-
T Consensus 252 ~t~~g~y~~~~~-~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDF--P~-~F~~Lcf~~tkd~Krlvy 327 (660)
T COG3972 252 LTKEGFYGMYRY-ICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDF--PQ-SFIDLCFMVTKDKKRLVY 327 (660)
T ss_pred CCCCcchHHHHH-HhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccC--CH-HHHHHHHHHhcCcceEEE
Confidence 343332222211 111222333221110 0111 1234799999999987 33 445555544 44566655
Q ss_pred ecCCCCCCHHHHHHHHhhhCC
Q 044036 302 TGTIMQNKIMELYNLFDWVAP 322 (875)
Q Consensus 302 TGTPiqN~~~El~~Ll~~l~p 322 (875)
- ++||.+|.++-.+
T Consensus 328 A-------yDelQnls~~~m~ 341 (660)
T COG3972 328 A-------YDELQNLSNVKMR 341 (660)
T ss_pred e-------hHhhhcccccCCC
Confidence 3 4566666665444
No 405
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=58.71 E-value=95 Score=34.50 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=18.4
Q ss_pred hCCCCcEEecCCCCchHHHHHHHH
Q 044036 153 KNKHGGILGDDMGLGKTIQTIAFL 176 (875)
Q Consensus 153 ~~~~ggILaDemGLGKTiqaiall 176 (875)
......+|--|.|+||+..|-++-
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH 43 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLH 43 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHH
Confidence 345677889999999999776543
No 406
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=58.54 E-value=14 Score=42.05 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=25.9
Q ss_pred ccEEEEcCCccccCcccHHHHHHHhcc---ccceEEeecCCCC
Q 044036 268 WEIVIVDEAHRLKNEKSKLYMACLELK---TRNRIGLTGTIMQ 307 (875)
Q Consensus 268 w~~VIiDEAH~ikn~~S~~~kal~~l~---~~~rllLTGTPiq 307 (875)
.+++++|||..+.. ....+++.+++ ...++.+|.||-.
T Consensus 102 ~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 102 IAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred eeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 58999999999843 34445555553 2235999999953
No 407
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=58.04 E-value=22 Score=41.71 Aligned_cols=43 Identities=26% Similarity=0.266 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhCC---CCcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 141 QREGVKFLYKLYKNK---HGGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~---~ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
|...+..|.+.+..+ ++=++.-.=|+|||-.|=.++.++-..+
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 666666666666554 3447788889999999888888875443
No 408
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=58.02 E-value=24 Score=39.76 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=45.9
Q ss_pred cccHHHHHHHHHHHHHhhCC--CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNK--HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN 213 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~--~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q 213 (875)
+|-+-|+.++.++++.+... ....|.-.-|+|||...=++...+. .....++++||+.+...
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~----------------~~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR----------------SRGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc----------------cccceEEEecchHHHHH
Confidence 36677999999987777543 4446778889999998877777662 23567999999876554
No 409
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=57.90 E-value=23 Score=38.15 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=35.0
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSR 220 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k 220 (875)
+|.+|.-..|+||+..|-|++... ...+.-|...-|+..|.-|-.+
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA-------------------nSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA-------------------NSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc-------------------CCceEEeehHHHHHHHhccHHH
Confidence 466789999999999988877643 2446667778899999866554
No 410
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=57.85 E-value=59 Score=36.91 Aligned_cols=87 Identities=20% Similarity=0.283 Sum_probs=59.8
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcCCcEEEEeCCChhHHH
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNRDMIL 238 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~~~v~v~~G~~r~~~~ 238 (875)
+++-|+|.||+-.-+-++..+. ..+++|.|+--.-+.||+--..+..-
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA-----------------~~~~vLYVsGEES~~QiklRA~RL~~--------------- 144 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLA-----------------KRGKVLYVSGEESLQQIKLRADRLGL--------------- 144 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHH-----------------hcCcEEEEeCCcCHHHHHHHHHHhCC---------------
Confidence 5799999999987777766653 23489999998889999877776531
Q ss_pred HHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCc
Q 044036 239 EKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNE 282 (875)
Q Consensus 239 ~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~ 282 (875)
...++.+.....+......+...+++++|||=.+.+-.+
T Consensus 145 -----~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 145 -----PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred -----CccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecc
Confidence 012344444444444444555677889999988887543
No 411
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.81 E-value=77 Score=36.42 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=32.4
Q ss_pred ccccEEEEcCCccccCcccHHHHHHHhc--------cccceEEeecCCCCCCHHHHHHHHhhhCC
Q 044036 266 VNWEIVIVDEAHRLKNEKSKLYMACLEL--------KTRNRIGLTGTIMQNKIMELYNLFDWVAP 322 (875)
Q Consensus 266 ~~w~~VIiDEAH~ikn~~S~~~kal~~l--------~~~~rllLTGTPiqN~~~El~~Ll~~l~p 322 (875)
.++++||||=+-+.-... .....+..+ .....|.|+||-=++.+.+....+.-+.+
T Consensus 298 ~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~ 361 (432)
T PRK12724 298 DGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNY 361 (432)
T ss_pred CCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCC
Confidence 467889999876653222 222222222 22456889999776666666665554444
No 412
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.75 E-value=59 Score=38.06 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=16.3
Q ss_pred EecCCCCchHHHHHHHHHHH
Q 044036 160 LGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l 179 (875)
|.-..|.|||.++.-++..+
T Consensus 261 LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 261 LMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred EECCCCccHHHHHHHHHHHH
Confidence 56689999999888777665
No 413
>PRK05973 replicative DNA helicase; Provisional
Probab=57.22 E-value=12 Score=39.55 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=22.3
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.+.-.+++-.+|+|||..++.|+....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a 89 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM 89 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345557899999999999999988764
No 414
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=57.13 E-value=44 Score=32.10 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=56.0
Q ss_pred eEEEEecchhHHHHHHHHHHHcCCcE--EEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCC
Q 044036 534 KILLFSYSVRMLDILEKFLIRKGYSF--SRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDP 611 (875)
Q Consensus 534 KVLIFs~~~~~ld~L~~~L~~~g~~~--~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~ 611 (875)
.|=++||+-.+...+-..+...|+.+ ..=.|+...-.-.++++.|.+||..+++++- ++.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 46689999999999999999887665 4446665555667899999999988766644 344
Q ss_pred CCCchhHHHhhhcccccCCcceEEEEEE
Q 044036 612 NWNPAQDLQAQDRSFRFGQKRHVIVFRL 639 (875)
Q Consensus 612 ~WNp~~~~QaigR~~RiGQ~k~V~VyrL 639 (875)
--||..+..+.-|+.| +|||.+|+-
T Consensus 65 ~~d~~~f~~~~~~a~~---~KPVv~lk~ 89 (138)
T PF13607_consen 65 IGDGRRFLEAARRAAR---RKPVVVLKA 89 (138)
T ss_dssp -S-HHHHHHHHHHHCC---CS-EEEEE-
T ss_pred CCCHHHHHHHHHHHhc---CCCEEEEeC
Confidence 4578899999888876 489987654
No 415
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=56.35 E-value=1.4e+02 Score=30.28 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=36.9
Q ss_pred cccccccccEEEEcCCccccC----cccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhh
Q 044036 261 SILSEVNWEIVIVDEAHRLKN----EKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWV 320 (875)
Q Consensus 261 ~~l~~~~w~~VIiDEAH~ikn----~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l 320 (875)
..+..-.|++||+||.-..-. +-.....++..-....-+.+||.-.+..+-|+..++.=+
T Consensus 116 ~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVTEm 179 (198)
T COG2109 116 EALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLVTEM 179 (198)
T ss_pred HHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHhhc
Confidence 345556899999999754322 223344455555566779999976555555555554433
No 416
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=55.87 E-value=26 Score=41.26 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=37.3
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhc
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS 222 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~ 222 (875)
.-.++.-++|.|||..++.|+..... ...++|+|.--.-..|-...+..++
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~----------------~ge~~~y~s~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACA----------------NKERAILFAYEESRAQLLRNAYSWG 314 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH----------------CCCeEEEEEeeCCHHHHHHHHHHcC
Confidence 34478999999999999999987642 2456888887666666666666553
No 417
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=55.86 E-value=13 Score=45.67 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=45.3
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHH-HH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQ-NW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~-qW 214 (875)
.|-|-|+++|.+- ...+++....|+|||.+.+.-+.+++...+ .....+|+|+.+.-.. .-
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~------------v~p~~IL~lTFT~kAA~em 63 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCG------------YQARHIAAVTFTNKAAREM 63 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcC------------CCHHHeeeEechHHHHHHH
Confidence 3778899999642 344556667999999999999998875321 1345699999865433 33
Q ss_pred HHHHHH
Q 044036 215 EIEFSR 220 (875)
Q Consensus 215 ~~E~~k 220 (875)
++-+.+
T Consensus 64 ~~Rl~~ 69 (672)
T PRK10919 64 KERVAQ 69 (672)
T ss_pred HHHHHH
Confidence 333433
No 418
>PRK10689 transcription-repair coupling factor; Provisional
Probab=55.69 E-value=57 Score=42.56 Aligned_cols=96 Identities=3% Similarity=0.000 Sum_probs=64.3
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEE
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR----KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVF 587 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~ 587 (875)
...+||..+....+......|.+|+|-+..+..+.-+...|.. .++.+..+.|..+..++.+++....++. ..|+
T Consensus 629 ~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~-~dIV 707 (1147)
T PRK10689 629 DVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK-IDIL 707 (1147)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC-CCEE
Confidence 5678999765544444445788999999998887766665553 3567888999999999999988887643 3344
Q ss_pred EEecCCcccccCCCCCCEEEE
Q 044036 588 LISTRAGGLGLNLVSANRVVI 608 (875)
Q Consensus 588 LiSt~agg~GLNL~~An~VI~ 608 (875)
+.+.......+++.....||+
T Consensus 708 VgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEE
Confidence 444333333455555555544
No 419
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=55.32 E-value=54 Score=36.58 Aligned_cols=110 Identities=22% Similarity=0.201 Sum_probs=56.7
Q ss_pred CCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcC-CcEEEEeCCChhHHHHHHHh
Q 044036 165 GLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEA 243 (875)
Q Consensus 165 GLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~-~~v~v~~G~~r~~~~~~~~~ 243 (875)
|+|||=.++.++..+..++- .-..+.+.-+....++ .+|.|.+--..--+|--.... ..+.++-|.+|......+..
T Consensus 68 GTGKTP~v~~La~~l~~~G~-~~~IlSRGYg~~~~~~-~~v~~~~~~~~~GDEpllla~~~~~~V~V~~dR~~aa~~l~~ 145 (338)
T PRK01906 68 GTGKTPTVIALVDALRAAGF-TPGVVSRGYGAKIKHP-TAVTPASRASDAGDEPLLIARRTDAPVWVCPDRVAAAQALLA 145 (338)
T ss_pred CCChHHHHHHHHHHHHHcCC-ceEEEecCCCCCCCCC-eEEcCCCChhhhCcHHHHhhhcCCCeEEEeCcHHHHHHHHHH
Confidence 99999999999987765432 1122222222222344 667776533222233211111 25667778887765544432
Q ss_pred --CCceEEEeecccccccccccccccccEEEEcCCccccC
Q 044036 244 --CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 244 --~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn 281 (875)
.+++|+|.-=. |+.. .| ..+.++|++|. ..+.|
T Consensus 146 ~~~~~dviIlDDG-fQH~--~L-~RDleIvl~D~-~~~Gn 180 (338)
T PRK01906 146 AHPGVDVIVSDDG-LQHY--RL-ARDVEIVVFDH-RLGGN 180 (338)
T ss_pred hCCCCCEEEECCC-Cccc--hh-cCCcEEEEEcC-CCCCC
Confidence 25677765311 1100 01 12567888886 55544
No 420
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=55.05 E-value=48 Score=36.69 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=27.9
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN 213 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q 213 (875)
.++-+.|+|||..++.++..... ..+++++|-......+
T Consensus 59 eI~G~~GsGKTtLaL~~~~~~~~----------------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 59 EIYGPESSGKTTLALHAIAEAQK----------------AGGTAAFIDAEHALDP 97 (321)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH----------------cCCcEEEEcccchhHH
Confidence 47778999999999999887642 3456777766544443
No 421
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=54.98 E-value=34 Score=36.62 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=21.9
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.+.-.+|+-..|.|||..++.++..+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345567899999999999999887764
No 422
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=54.96 E-value=65 Score=31.65 Aligned_cols=53 Identities=6% Similarity=0.010 Sum_probs=34.0
Q ss_pred ccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCC
Q 044036 266 VNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAP 322 (875)
Q Consensus 266 ~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p 322 (875)
-++|+||+|=...+.+ ....+..+.....+++..+|-..++.+...+++++..
T Consensus 66 ~~yD~VIiD~pp~~~~----~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 66 GELDYLVIDMPPGTGD----EHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred CCCCEEEEeCCCCCcH----HHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 3689999998876521 1111222234455666668888888888888877753
No 423
>PRK08939 primosomal protein DnaI; Reviewed
Probab=54.17 E-value=31 Score=37.96 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=26.6
Q ss_pred HHHHHHHHhh--CCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 144 GVKFLYKLYK--NKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 144 gv~~l~~~~~--~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
+..|+-.... .+.|.+|.-++|.|||..+.|++..+.
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4555543221 345667888999999999999998875
No 424
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=53.53 E-value=70 Score=26.38 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=40.6
Q ss_pred eEEEEec-chhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 534 KILLFSY-SVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 534 KVLIFs~-~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
||.||+. +-........+|...|++|..++-....+.++++...........++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 4667764 44567888889999999999999988777777777666543244445544
No 425
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=53.43 E-value=34 Score=42.47 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.3
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
..+.||.-+.|.|||..+-++...+.
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 46778999999999999888876553
No 426
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=53.43 E-value=53 Score=37.08 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=17.9
Q ss_pred CCcEEecCCCCchHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~ 178 (875)
...||.-+.|.|||-.|-.+...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHh
Confidence 46699999999999877655543
No 427
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=53.07 E-value=97 Score=34.01 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 141 QREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
|...+..+...+..++ .-++.-+-|.|||..|..++..++..
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 3444444444444442 33788899999999999999988654
No 428
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=52.84 E-value=84 Score=36.52 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHH
Q 044036 142 REGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWE 215 (875)
Q Consensus 142 ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~ 215 (875)
.+....+..........++.-+.|+|||..+-++-... ....+|+++|-...+-..|.
T Consensus 144 ~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~----------------~~~~~~~~~~~c~~~~~~~~ 201 (463)
T TIGR01818 144 QEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS----------------PRANGPFIALNMAAIPKDLI 201 (463)
T ss_pred HHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC----------------CCCCCCeEEEeCCCCCHHHH
Confidence 34444444444455677889999999998655443321 22456788887766655554
No 429
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.79 E-value=18 Score=40.51 Aligned_cols=63 Identities=25% Similarity=0.303 Sum_probs=41.5
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCCC
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGPN 233 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~~ 233 (875)
|+|| .+-|-|-+.-|+...+.-..+ ..+...+|+--|+.. -.-..+|+.+..++++.+.+|.+
T Consensus 356 ~ViL--~psLe~Rie~lA~aTaNTK~h------------~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGD 419 (630)
T KOG0742|consen 356 GVIL--HPSLEKRIEDLAIATANTKKH------------QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGD 419 (630)
T ss_pred Ceec--CHHHHHHHHHHHHHhcccccc------------cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCC
Confidence 4444 357888888777766532221 223455788888765 45578889988888888888764
No 430
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=52.25 E-value=1.2e+02 Score=34.49 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=31.8
Q ss_pred ccEEEEcCCcc-ccCcccHHHHHHHhc-----cccceEEeecCCCCCCHHHHHHHHhhhCCC
Q 044036 268 WEIVIVDEAHR-LKNEKSKLYMACLEL-----KTRNRIGLTGTIMQNKIMELYNLFDWVAPG 323 (875)
Q Consensus 268 w~~VIiDEAH~-ikn~~S~~~kal~~l-----~~~~rllLTGTPiqN~~~El~~Ll~~l~p~ 323 (875)
.|+|.||=+-+ -++. ....-+..+ ....-|.||+|-=.+.+.+++.-+..+...
T Consensus 282 ~d~ILVDTaGrs~~D~--~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 282 CDVILVDTAGRSQYDK--EKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPID 341 (407)
T ss_pred CCEEEEeCCCCCccCH--HHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcc
Confidence 47788886543 2221 111112222 344568999998777788877777776654
No 431
>PF13173 AAA_14: AAA domain
Probab=52.19 E-value=12 Score=35.10 Aligned_cols=36 Identities=25% Similarity=0.151 Sum_probs=25.1
Q ss_pred cccEEEEcCCccccCcccHHHHHHHhc---cccceEEeecCCC
Q 044036 267 NWEIVIVDEAHRLKNEKSKLYMACLEL---KTRNRIGLTGTIM 306 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S~~~kal~~l---~~~~rllLTGTPi 306 (875)
+-.+||+||+|++.+. ...++.+ ....++.+||+-.
T Consensus 61 ~~~~i~iDEiq~~~~~----~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDW----EDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhccH----HHHHHHHHHhccCceEEEEccch
Confidence 4578999999999653 3334443 2356899999853
No 432
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=51.91 E-value=79 Score=31.12 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=18.1
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
++.-..|.|||..+..++..+.
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999998887764
No 433
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=51.87 E-value=21 Score=41.56 Aligned_cols=114 Identities=16% Similarity=0.262 Sum_probs=70.5
Q ss_pred ecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHh--cCCcEEEEeCCChhHHH
Q 044036 161 GDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW--STFNVSIYHGPNRDMIL 238 (875)
Q Consensus 161 aDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~--~~~~v~v~~G~~r~~~~ 238 (875)
+-++.+|||.-|+-=+.. .+.-+..-|..|+.. +-+.+. .+..+-.++|..+....
T Consensus 197 ~GPTNSGKTy~ALqrl~~--------------------aksGvycGPLrLLA~--EV~~r~na~gipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 197 VGPTNSGKTYRALQRLKS--------------------AKSGVYCGPLRLLAH--EVYDRLNALGIPCDLLTGEERRFVL 254 (700)
T ss_pred eCCCCCchhHHHHHHHhh--------------------hccceecchHHHHHH--HHHHHhhhcCCCccccccceeeecC
Confidence 568999999988765443 233466667776653 112232 23567778887665433
Q ss_pred HHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCccc--HHHHHHHhccccceEEeecCC
Q 044036 239 EKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKS--KLYMACLELKTRNRIGLTGTI 305 (875)
Q Consensus 239 ~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S--~~~kal~~l~~~~rllLTGTP 305 (875)
.. ......+-+|.+|+... ..+++.||||.+.++.+.- ..++|+..+.+.- +=|.|-|
T Consensus 255 ~~--~~~a~hvScTVEM~sv~------~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE-iHLCGep 314 (700)
T KOG0953|consen 255 DN--GNPAQHVSCTVEMVSVN------TPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE-IHLCGEP 314 (700)
T ss_pred CC--CCcccceEEEEEEeecC------CceEEEEehhHHhhcCcccchHHHHHHHhhhhhh-hhccCCc
Confidence 32 11245777888877543 3579999999999988643 4567776664432 2344444
No 434
>PRK06904 replicative DNA helicase; Validated
Probab=51.63 E-value=80 Score=37.01 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=36.7
Q ss_pred HHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHH
Q 044036 148 LYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIE 217 (875)
Q Consensus 148 l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E 217 (875)
+...+..+.=.|||--+|+|||.-++.++..... ....++++++.---..++..-
T Consensus 214 ~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~---------------~~g~~Vl~fSlEMs~~ql~~R 268 (472)
T PRK06904 214 KTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAM---------------ASEKPVLVFSLEMPAEQIMMR 268 (472)
T ss_pred HHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHH---------------hcCCeEEEEeccCCHHHHHHH
Confidence 3333444445589999999999999888765531 124578888876555565544
No 435
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=51.49 E-value=52 Score=33.04 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=34.2
Q ss_pred ccccccccEEEEcCCccccCc----ccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhh
Q 044036 262 ILSEVNWEIVIVDEAHRLKNE----KSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDW 319 (875)
Q Consensus 262 ~l~~~~w~~VIiDEAH~ikn~----~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~ 319 (875)
.+..-.||+||+||.=..-+. .......+..-....-+.|||-- -+.+|..+.++
T Consensus 110 ~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~---~p~~Lie~AD~ 168 (178)
T PRK07414 110 VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPE---MPESLLAIADQ 168 (178)
T ss_pred HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCC---CCHHHHHhCCe
Confidence 344567999999997655332 23444455554556679999984 44555544443
No 436
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.45 E-value=87 Score=38.76 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=16.4
Q ss_pred EEecCCCCchHHHHHHHHHHH
Q 044036 159 ILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l 179 (875)
.|.-..|.|||.++.-++..+
T Consensus 189 ~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 189 ALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred EEECCCCCcHHHHHHHHHhhH
Confidence 367899999998877766654
No 437
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=51.40 E-value=28 Score=36.55 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=34.4
Q ss_pred cEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEc---CcchHHHHHHHHHH
Q 044036 158 GILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIIC---PSSVIQNWEIEFSR 220 (875)
Q Consensus 158 gILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~---P~sLl~qW~~E~~k 220 (875)
++|+-+.|+|||..++.++.++..-.+-. . ........+++|+++ |...+.+-...+..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~-g---~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLF-G---GGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCcccc-C---CccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 67888999999999999987753211000 0 000123467899998 44444444444433
No 438
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=51.24 E-value=34 Score=37.44 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 145 VKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 145 v~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
..+|......+.+.+++-.+|+|||-.+-+++..+
T Consensus 122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 122 RDVLREAVLARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35566666677788899999999999988877665
No 439
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.15 E-value=81 Score=36.92 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=18.9
Q ss_pred CCCcEEecCCCCchHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLA 177 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~ 177 (875)
.+|.+|.-++|+|||+.|=|++-
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAG 359 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAG 359 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhc
Confidence 36889999999999998766653
No 440
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=50.63 E-value=62 Score=34.91 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=17.1
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~ 180 (875)
+.-..|.|||.++.-++..+.
T Consensus 77 l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 77 FVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred EECCCCCcHHHHHHHHHHHHH
Confidence 456899999999888887663
No 441
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=50.46 E-value=1.2e+02 Score=32.94 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHHHHhhCCC--CcEEecCCCCchHHHHHHHHHHHhcCC
Q 044036 137 LLEHQREGVKFLYKLYKNKH--GGILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~--ggILaDemGLGKTiqaiall~~l~~~~ 183 (875)
|...|...+..+...+..++ .++|-.. |.||+..|..|+..++..+
T Consensus 3 l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 3 LKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 55668888888877776664 3444333 6899999999999988654
No 442
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=49.48 E-value=61 Score=33.18 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.3
Q ss_pred cEEecCCCCchHHHHHHHHHHHhcC
Q 044036 158 GILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 158 gILaDemGLGKTiqaiall~~l~~~ 182 (875)
.+|+...|.|||..++.-...+..+
T Consensus 8 IflG~apGVGKTy~ML~ea~~l~~~ 32 (211)
T PF02702_consen 8 IFLGAAPGVGKTYAMLQEAHRLKEQ 32 (211)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC
Confidence 3689999999999998887776543
No 443
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=49.14 E-value=35 Score=38.22 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhCC----CCcEEecCCCCchHHHHHHHHHHH
Q 044036 140 HQREGVKFLYKLYKNK----HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 140 yQ~~gv~~l~~~~~~~----~ggILaDemGLGKTiqaiall~~l 179 (875)
..+++...+.++.+.+ ++.+|+-++|+|||-.|+++...+
T Consensus 31 ~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 31 KAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp HHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 4567776677766644 566889999999999999998876
No 444
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=49.00 E-value=42 Score=39.72 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=33.0
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW 221 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~ 221 (875)
++.-++|.|||..+..++...+. ...++++|.-.....+-.+.+..+
T Consensus 277 li~G~~G~GKT~l~~~~~~~~~~----------------~g~~~~yis~e~~~~~i~~~~~~~ 323 (509)
T PRK09302 277 LVSGATGTGKTLLASKFAEAACR----------------RGERCLLFAFEESRAQLIRNARSW 323 (509)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHh----------------CCCcEEEEEecCCHHHHHHHHHHc
Confidence 57889999999999999877642 345678887655455554455444
No 445
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=48.36 E-value=40 Score=37.33 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.+.+.|. .||......+.+.|++-.+|+|||-..-+++..+.
T Consensus 128 ~~~~~~~---~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 128 IMTEAQA---SVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCCHHHH---HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455554 44555555677778999999999998888777653
No 446
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=47.98 E-value=27 Score=39.58 Aligned_cols=78 Identities=21% Similarity=0.366 Sum_probs=51.2
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcCCcEEEEeCCCh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPNR 234 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~~~v~v~~G~~r 234 (875)
..+.||--.+|+|||+.|-.++..+ .-..+||-...+.| .-|-|.+-
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~l--------------------dVPfaIcDcTtLTQ-------------AGYVGeDV 272 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVL--------------------DVPFAICDCTTLTQ-------------AGYVGEDV 272 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHh--------------------CCCeEEecccchhh-------------cccccccH
Confidence 4688999999999999988877654 11356676655554 23667776
Q ss_pred hHHHHHHHh-CCceEEEeecccccccccccccccccEEEEcCCcccc
Q 044036 235 DMILEKLEA-CGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLK 280 (875)
Q Consensus 235 ~~~~~~~~~-~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ik 280 (875)
+.++.++.. .+++ ....+-.+|++||.++|.
T Consensus 273 Esvi~KLl~~A~~n---------------VekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 273 ESVIQKLLQEAEYN---------------VEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred HHHHHHHHHHccCC---------------HHHHhcCeEEEehhhhhc
Confidence 666666532 2221 122234689999999884
No 447
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=47.48 E-value=73 Score=35.32 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=27.4
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchH
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVI 211 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl 211 (875)
.++-+.|+|||..++.++..... ..+++++|.+...+
T Consensus 59 eI~Gp~GsGKTtLal~~~~~~~~----------------~g~~~vyId~E~~~ 95 (325)
T cd00983 59 EIYGPESSGKTTLALHAIAEAQK----------------LGGTVAFIDAEHAL 95 (325)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH----------------cCCCEEEECccccH
Confidence 46779999999999998877632 34667888775443
No 448
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.42 E-value=37 Score=35.70 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=32.6
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFS 219 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~ 219 (875)
+...+++-+.|+|||..+.-|+...+. ...++|+|+-..-..+-.+.+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~----------------~ge~~lyvs~ee~~~~i~~~~~ 69 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ----------------MGEPGIYVALEEHPVQVRRNMA 69 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH----------------cCCcEEEEEeeCCHHHHHHHHH
Confidence 344567999999999999999887542 2456788875443334333343
No 449
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=47.17 E-value=16 Score=35.89 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHhhc
Q 044036 831 IEYSLLARFMGMDVFEFSKWILSA 854 (875)
Q Consensus 831 ~qf~~~a~~~g~~~~ef~~~~~~~ 854 (875)
.=|.+||+.+||+..||++.-+.=
T Consensus 33 ~iFR~~A~e~gmsl~ef~~~AE~~ 56 (179)
T COG1102 33 TIFREMARERGMSLEEFSRYAEED 56 (179)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhcC
Confidence 359999999999999999977654
No 450
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=47.12 E-value=1.9e+02 Score=33.68 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.0
Q ss_pred CCCCcEEecCCCCchHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAF 175 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaial 175 (875)
.....++.-|.|+|||..|-++
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~i 181 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHAL 181 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHH
Confidence 4566788999999999765544
No 451
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=46.60 E-value=55 Score=36.22 Aligned_cols=22 Identities=18% Similarity=0.591 Sum_probs=14.9
Q ss_pred cccccccccEEEEcCCccccCc
Q 044036 261 SILSEVNWEIVIVDEAHRLKNE 282 (875)
Q Consensus 261 ~~l~~~~w~~VIiDEAH~ikn~ 282 (875)
..+....+++||+||+-.+...
T Consensus 91 ~~~~G~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 91 DNIRGFEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp HHHHTS--SEEEEESGGGSTTH
T ss_pred ccccccccceeeeeecccCchH
Confidence 3455578899999998887553
No 452
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=46.10 E-value=28 Score=37.27 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=26.2
Q ss_pred HHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 145 VKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 145 v~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
..+|......+.+.+++-++|+|||-+.-+++..+
T Consensus 117 ~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 117 AEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp HHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHhhccccceEEEEECCCccccchHHHHHhhhc
Confidence 34555544556677889999999999998887765
No 453
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=45.87 E-value=95 Score=28.20 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=43.5
Q ss_pred cccCchHHHHHHHHHHhhc--CCCeEEEEecchhHHHHHHHHHHHc---CCcEEEEeCCCCHHHH
Q 044036 512 VKSCGKMRALEKLMYSWAS--KGDKILLFSYSVRMLDILEKFLIRK---GYSFSRLDGSTPSNLR 571 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~--~g~KVLIFs~~~~~ld~L~~~L~~~---g~~~~~ldG~~~~~eR 571 (875)
+..+||-..+..++..... ...++||++......+.....+... +..+..+++.......
T Consensus 8 ~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (144)
T cd00046 8 PTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQ 72 (144)
T ss_pred CCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHH
Confidence 4567998888877776654 5679999999998887766666554 3778888887654443
No 454
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=45.71 E-value=34 Score=42.45 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=46.3
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchH-HH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVI-QN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl-~q 213 (875)
..|-|-|+++|.+- ...+++-...|+|||.+.+.-++++....+ .....+|+|+-+.-. ..
T Consensus 8 ~~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~------------v~p~~IL~lTFT~kAA~E 69 (721)
T PRK11773 8 DSLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN------------ASPYSIMAVTFTNKAAAE 69 (721)
T ss_pred HhcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCC------------CChhHeEeeeccHHHHHH
Confidence 35889999999632 234566667899999999999998875332 234568999986543 33
Q ss_pred HHHHHHH
Q 044036 214 WEIEFSR 220 (875)
Q Consensus 214 W~~E~~k 220 (875)
-++-+.+
T Consensus 70 m~~Rl~~ 76 (721)
T PRK11773 70 MRHRIEQ 76 (721)
T ss_pred HHHHHHH
Confidence 4333444
No 455
>PRK10867 signal recognition particle protein; Provisional
Probab=45.62 E-value=76 Score=36.67 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=18.5
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
++.-..|.|||.+++-++.++.
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHH
Confidence 4677999999999998888764
No 456
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=45.62 E-value=30 Score=42.87 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~qW 214 (875)
.|-|-|+++|..- ...+++....|+|||.+.+.-+.++....+ .....+|+|+.+.- ...-
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~------------v~p~~IL~lTFTnkAA~em 65 (715)
T TIGR01075 4 GLNDKQREAVAAP------PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN------------ASPHSIMAVTFTNKAAAEM 65 (715)
T ss_pred ccCHHHHHHHcCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCC------------CCHHHeEeeeccHHHHHHH
Confidence 4788999999631 345566778899999999999998875422 23556899998654 4444
Q ss_pred HHHHHHh
Q 044036 215 EIEFSRW 221 (875)
Q Consensus 215 ~~E~~k~ 221 (875)
++-+.+.
T Consensus 66 ~~Rl~~~ 72 (715)
T TIGR01075 66 RHRIGAL 72 (715)
T ss_pred HHHHHHH
Confidence 4445443
No 457
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=45.27 E-value=78 Score=34.54 Aligned_cols=68 Identities=15% Similarity=0.257 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCC-----CCceEEEEe
Q 044036 520 ALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSS-----PSKQVFLIS 590 (875)
Q Consensus 520 ~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~-----~~~~v~LiS 590 (875)
.+.+++.. +.++|||.-.-...-...+..|+..|+++.|+-|+.-.+.-..+...|+++ .+..+++++
T Consensus 67 ~~~eI~~l---npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 67 VLDEIIEL---NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred HHHHHHhh---CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 34555543 789999999999999999999999999999999999988888888888632 233456655
No 458
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=45.13 E-value=44 Score=34.74 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=20.4
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.-.+++-+.|+|||..+..++...+
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~ 45 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGL 45 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHH
Confidence 34446788999999999998887654
No 459
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=44.94 E-value=7.2 Score=45.94 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHh
Q 044036 143 EGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW 221 (875)
Q Consensus 143 ~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~ 221 (875)
+++.|.+..-..|.+..++.+.|+||+-.+..++.......+...+.|+..+=..+..|..|..|+..=...++++...
T Consensus 18 ~Al~~gl~i~~~GYNIfv~G~~GtGr~t~v~~~l~~~a~~~~~P~D~cYV~NF~~p~~P~~l~LpaG~G~~f~~~m~~l 96 (509)
T PF13654_consen 18 EALEFGLGIRKPGYNIFVMGPPGTGRRTYVRRFLEERAKKKPTPPDWCYVNNFDDPRKPKALSLPAGQGKKFKKDMEEL 96 (509)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3455666666678889999999999999999999888766666666666655556788899999988776666666654
No 460
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=44.94 E-value=1e+02 Score=35.46 Aligned_cols=21 Identities=19% Similarity=0.022 Sum_probs=17.0
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~ 180 (875)
+.-..|.|||.++.-++.++.
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 566899999999888877663
No 461
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=44.49 E-value=46 Score=37.04 Aligned_cols=35 Identities=29% Similarity=0.248 Sum_probs=27.9
Q ss_pred HHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 145 VKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 145 v~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
..||......+.+.+++-.+|+|||-..-+++..+
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 45666666778888999999999998887776654
No 462
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=44.13 E-value=87 Score=38.29 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=19.8
Q ss_pred CCCcEEecCCCCchHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~ 178 (875)
..|.+|.-+.|.|||..+-+++..
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999988877654
No 463
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=44.10 E-value=27 Score=42.92 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHH
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWE 215 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~ 215 (875)
|-|-|+.+|.+- ...+++-...|+|||.+.+.-+.+++...+ .....+|+|+.+ ....+-+
T Consensus 2 Ln~~Q~~av~~~------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~------------~~p~~IL~vTFt~~Aa~em~ 63 (664)
T TIGR01074 2 LNPQQQEAVEYV------TGPCLVLAGAGSGKTRVITNKIAYLIQNCG------------YKARNIAAVTFTNKAAREMK 63 (664)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcC------------CCHHHeEEEeccHHHHHHHH
Confidence 678899988642 345566668899999999999988874321 134568888775 4445555
Q ss_pred HHHHHh
Q 044036 216 IEFSRW 221 (875)
Q Consensus 216 ~E~~k~ 221 (875)
+.+.+.
T Consensus 64 ~Rl~~~ 69 (664)
T TIGR01074 64 ERVAKT 69 (664)
T ss_pred HHHHHH
Confidence 555543
No 464
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=44.00 E-value=81 Score=38.41 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=53.2
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.|-.-|+.+..+++. ..=.|+--..|+|||.+++-++..++.... .....-|+||||=+ +.+.|.
T Consensus 378 ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s----------~~~~~epIlvvC~Tnhavdq~ 443 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSS----------GYTEPEPILVVCLTNHAVDQY 443 (1025)
T ss_pred eecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhccc----------ccccccceeeeehhhHHHHHH
Confidence 466689999998876 456688889999999999988888764321 13346789999984 678887
Q ss_pred HHHHHH
Q 044036 215 EIEFSR 220 (875)
Q Consensus 215 ~~E~~k 220 (875)
..-+-.
T Consensus 444 ligiy~ 449 (1025)
T KOG1807|consen 444 LIGIYY 449 (1025)
T ss_pred HHHHHh
Confidence 666654
No 465
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=43.99 E-value=53 Score=35.23 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=32.0
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCC-cEEecCCCCchHHHHHHHHHHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHG-GILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~g-gILaDemGLGKTiqaiall~~l 179 (875)
...+.+.|.+.+.++.. ...| .+++-++|+|||-..-+++..+
T Consensus 61 ~lg~~~~~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 61 KLGLKPENLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HcCCCHHHHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 34567888888877654 2334 4689999999999988887765
No 466
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=43.50 E-value=41 Score=35.54 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=20.7
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~ 178 (875)
...|+++.-+.|+|||++|=+..+.
T Consensus 204 pPKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 204 PPKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHHh
Confidence 4579999999999999998776553
No 467
>PTZ00062 glutaredoxin; Provisional
Probab=43.44 E-value=1.2e+02 Score=31.13 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=47.0
Q ss_pred HHHHHHHhhcCCCeEEEEecc------hhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEec
Q 044036 521 LEKLMYSWASKGDKILLFSYS------VRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIST 591 (875)
Q Consensus 521 L~~LL~~~~~~g~KVLIFs~~------~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt 591 (875)
+.+.++++. +.++|+||+.. -.....+..+|...|+.|..+|=....+.|+.+. .+.+.+....+.|.-
T Consensus 102 ~~~~v~~li-~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~-~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 102 TVEKIERLI-RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELK-VYSNWPTYPQLYVNG 176 (204)
T ss_pred HHHHHHHHH-hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHH-HHhCCCCCCeEEECC
Confidence 444444443 45899999983 4567788999999999999998877766666544 565544544455553
No 468
>PF05729 NACHT: NACHT domain
Probab=43.25 E-value=1.3e+02 Score=28.82 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=19.1
Q ss_pred EEecCCCCchHHHHHHHHHHHhcC
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~ 182 (875)
+|.-+.|.|||..+-.++..+...
T Consensus 4 ~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 4 WISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEECCCCCChHHHHHHHHHHHHhc
Confidence 566688999999998888777543
No 469
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=43.07 E-value=95 Score=35.86 Aligned_cols=23 Identities=17% Similarity=-0.018 Sum_probs=19.3
Q ss_pred cEEecCCCCchHHHHHHHHHHHh
Q 044036 158 GILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 158 gILaDemGLGKTiqaiall~~l~ 180 (875)
.+++-..|.|||.++.-++.++.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 35788999999999998888764
No 470
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=43.00 E-value=80 Score=34.21 Aligned_cols=37 Identities=30% Similarity=0.315 Sum_probs=24.7
Q ss_pred cccEEEEcCCccccCcccHHHHHHHhc--cccceEEeecCCC
Q 044036 267 NWEIVIVDEAHRLKNEKSKLYMACLEL--KTRNRIGLTGTIM 306 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S~~~kal~~l--~~~~rllLTGTPi 306 (875)
.-.++|+|||.++.- .....++.+ .+..-+.|.|+|-
T Consensus 165 ~~~~iivDEA~~L~~---~ale~lr~i~d~~Gi~~vLvG~pr 203 (297)
T COG2842 165 TVRLIIVDEADRLPY---RALEELRRIHDKTGIGVVLVGMPR 203 (297)
T ss_pred CcceeeeehhhccCh---HHHHHHHHHHHhhCceEEEecChH
Confidence 347899999999843 223334444 4455688899984
No 471
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=42.69 E-value=50 Score=34.18 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=33.0
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW 221 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~ 221 (875)
+++-+.|.|||..++.++...+. ...++++|+-..-..+-.+.+..+
T Consensus 20 li~G~~G~GKt~~~~~~~~~~~~----------------~g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 20 VVIGEYGTGKTTFSLQFLYQGLK----------------NGEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh----------------CCCeEEEEECCCCHHHHHHHHHHc
Confidence 57888999999999999876542 345788887765555555444443
No 472
>PRK09354 recA recombinase A; Provisional
Probab=42.26 E-value=1.2e+02 Score=34.03 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=27.4
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHH
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQ 212 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~ 212 (875)
.+.-+.|+|||..++.++..... ..++++.|..-.-+.
T Consensus 64 eI~G~~GsGKTtLal~~~~~~~~----------------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 64 EIYGPESSGKTTLALHAIAEAQK----------------AGGTAAFIDAEHALD 101 (349)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH----------------cCCcEEEECCccchH
Confidence 36779999999999999887642 245677777654444
No 473
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=42.17 E-value=96 Score=30.13 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=38.4
Q ss_pred eEEEEecc-------hhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcC
Q 044036 534 KILLFSYS-------VRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNS 580 (875)
Q Consensus 534 KVLIFs~~-------~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~ 580 (875)
||+||+.+ -.....+..+|...++.|..+|=++..+.++++.+....
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~ 54 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGA 54 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC
Confidence 57888887 345778999999999999999999988888887766543
No 474
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=41.93 E-value=1.2e+02 Score=39.95 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=55.7
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH----cCCcEE---EEeCCCCHHHHHHHHHHhcCCCCc
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR----KGYSFS---RLDGSTPSNLRQSLVDDFNSSPSK 584 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~---~ldG~~~~~eR~~~i~~F~~~~~~ 584 (875)
+..+||.....-++..+...+.++||.+..+..+.-+...|.. .|+... .++|+++..++...++.+.+++ .
T Consensus 101 pTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~-~ 179 (1171)
T TIGR01054 101 PTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD-F 179 (1171)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC-C
Confidence 6778998766555555555688999999998877666555543 355543 4789999999988888887642 2
Q ss_pred eEEEEecC
Q 044036 585 QVFLISTR 592 (875)
Q Consensus 585 ~v~LiSt~ 592 (875)
. +||+|.
T Consensus 180 d-IlV~Tp 186 (1171)
T TIGR01054 180 D-ILITTT 186 (1171)
T ss_pred C-EEEECH
Confidence 3 455553
No 475
>CHL00095 clpC Clp protease ATP binding subunit
Probab=41.91 E-value=39 Score=42.65 Aligned_cols=42 Identities=29% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhCC----------CC-cEEecCCCCchHHHHHHHHHHHhc
Q 044036 140 HQREGVKFLYKLYKNK----------HG-GILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 140 yQ~~gv~~l~~~~~~~----------~g-gILaDemGLGKTiqaiall~~l~~ 181 (875)
-|.+++.-+...+... .+ -++.-++|.|||..|-++...++.
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 4888887776554311 23 368899999999999999888763
No 476
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=41.75 E-value=70 Score=37.89 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=39.6
Q ss_pred HHHHHHH-HhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHh
Q 044036 144 GVKFLYK-LYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRW 221 (875)
Q Consensus 144 gv~~l~~-~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~ 221 (875)
++.-++. -+..+.-.+|+-++|+|||..++.|+...+.+ ...++|.|.=-.-..+-.+.+..+
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~---------------~ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKR---------------FDEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---------------cCCCEEEEEccCCHHHHHHHHHHc
Confidence 4555543 23334445788999999999999998765422 145678887554455544445444
No 477
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.64 E-value=32 Score=38.21 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.6
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~ 178 (875)
..+|++|.-.+|+|||+.|=|++..
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4689999999999999998887764
No 478
>PRK14701 reverse gyrase; Provisional
Probab=40.64 E-value=1.3e+02 Score=40.77 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=54.5
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH------cCCcEEEEeCCCCHHHHHHHHHHhcCCCCce
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR------KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ 585 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~------~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~ 585 (875)
+..+||.....-+.......|.++||.+..+..+..+...|.. .++.+..++|+++..++.++++.+.++.- .
T Consensus 102 PTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~-d 180 (1638)
T PRK14701 102 PTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDF-D 180 (1638)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCC-C
Confidence 6678998743332222334678999999998887766666654 25677889999999998888888876522 3
Q ss_pred EEEEec
Q 044036 586 VFLIST 591 (875)
Q Consensus 586 v~LiSt 591 (875)
|++.++
T Consensus 181 ILV~TP 186 (1638)
T PRK14701 181 ILVTTA 186 (1638)
T ss_pred EEEECC
Confidence 444443
No 479
>PRK13531 regulatory ATPase RavA; Provisional
Probab=40.62 E-value=36 Score=39.68 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 141 QREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
|.+.|+-+......+...+|-.++|+|||..|-++....
T Consensus 25 re~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 25 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred cHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 556666666666778899999999999999998887764
No 480
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.76 E-value=79 Score=35.85 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=17.2
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
.+.-..|.|||.++..++..+.
T Consensus 210 ~lvGptGvGKTTt~akLA~~l~ 231 (407)
T PRK12726 210 SLIGQTGVGKTTTLVKLGWQLL 231 (407)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 3566789999999888876653
No 481
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=39.35 E-value=1.9e+02 Score=35.05 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=66.9
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecch----hHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEE
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSV----RMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLI 589 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~----~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~Li 589 (875)
.|||.-+..--+-.....|-++.+....- +..+-+..+|...|+.+..+.|++...+|.+++..-.++... ++|
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~--ivV 370 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID--IVV 370 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC--EEE
Confidence 47885443333333356788888887753 345667788888899999999999999999999999987655 777
Q ss_pred ecCCc-ccccCCCCCCEEEE
Q 044036 590 STRAG-GLGLNLVSANRVVI 608 (875)
Q Consensus 590 St~ag-g~GLNL~~An~VI~ 608 (875)
-|.|. -..+++...-.||+
T Consensus 371 GTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 371 GTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EcchhhhcceeecceeEEEE
Confidence 77773 44556655555554
No 482
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=39.34 E-value=1.6e+02 Score=33.62 Aligned_cols=54 Identities=15% Similarity=0.300 Sum_probs=33.7
Q ss_pred cccEEEEcCCccccCcccH---HHHHHHhc-cccceEEeec--CCCCCC--HHHHHHHHhhh
Q 044036 267 NWEIVIVDEAHRLKNEKSK---LYMACLEL-KTRNRIGLTG--TIMQNK--IMELYNLFDWV 320 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S~---~~kal~~l-~~~~rllLTG--TPiqN~--~~El~~Ll~~l 320 (875)
..++++||-.|.+.+...- +.-.+..+ .....|+||+ +|-+-+ ..+|.+-+.|-
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G 236 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG 236 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce
Confidence 4589999999999776332 33334444 2344899999 674433 34666666553
No 483
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=39.21 E-value=61 Score=33.95 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=20.8
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.-.++.-+.|.|||..+..++....
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34446788999999999998888764
No 484
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=39.06 E-value=1.6e+02 Score=34.84 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=18.4
Q ss_pred CCCcEEecCCCCchHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~ 178 (875)
+...+|--|.|+|||..|-++-..
T Consensus 210 ~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 210 DLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 456678889999999988776543
No 485
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=38.47 E-value=4.2e+02 Score=26.46 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=54.3
Q ss_pred cccCchHHH-HHHHHHHhhc----CCCeEEEEecchhHHHHHHHHH----HHcCCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 044036 512 VKSCGKMRA-LEKLMYSWAS----KGDKILLFSYSVRMLDILEKFL----IRKGYSFSRLDGSTPSNLRQSLVDDFNSSP 582 (875)
Q Consensus 512 ~~~s~Kl~~-L~~LL~~~~~----~g~KVLIFs~~~~~ld~L~~~L----~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~ 582 (875)
+..+||... +..++..+.. .+.++||.+.....+..+...+ ...++.+..++|+.+..++...+. .
T Consensus 44 ~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 118 (203)
T cd00268 44 QTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK---R-- 118 (203)
T ss_pred CCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc---C--
Confidence 556788544 5566665543 4568999998877666544444 334788889999988766544433 2
Q ss_pred CceEEEEecCC----c-ccccCCCCCCEEEE
Q 044036 583 SKQVFLISTRA----G-GLGLNLVSANRVVI 608 (875)
Q Consensus 583 ~~~v~LiSt~a----g-g~GLNL~~An~VI~ 608 (875)
+..|++.++.. . ..-.++...+.+|+
T Consensus 119 ~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 119 GPHIVVATPGRLLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred CCCEEEEChHHHHHHHHcCCCChhhCCEEEE
Confidence 22344444321 0 11155666666554
No 486
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=38.45 E-value=57 Score=34.73 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=30.4
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV 210 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL 210 (875)
+.-.++.-.+|+|||+-++-|+..... ...|+|.|+-...
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~----------------~ge~vlyvs~~e~ 62 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAR----------------EGEPVLYVSTEES 62 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHh----------------cCCcEEEEEecCC
Confidence 344467889999999999999998753 2567888886433
No 487
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=38.37 E-value=1.3e+02 Score=36.26 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=50.5
Q ss_pred CeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCH-----HHHHHHHHHhcC----CCCceEEEEec--CCcccccCCC
Q 044036 533 DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPS-----NLRQSLVDDFNS----SPSKQVFLIST--RAGGLGLNLV 601 (875)
Q Consensus 533 ~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~-----~eR~~~i~~F~~----~~~~~v~LiSt--~agg~GLNL~ 601 (875)
.=|++|-.+-..|..+...+...|+- .+|.|..+. ..-.++++.|.. +.+ .+|++. .-.++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~G--aiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRG--AILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCC--eEEEEEeccccccccccc
Confidence 45888888888899888888876652 233332110 012446666642 222 355553 3346999999
Q ss_pred C--CCEEEEcCCCCC
Q 044036 602 S--ANRVVIFDPNWN 614 (875)
Q Consensus 602 ~--An~VI~~D~~WN 614 (875)
+ +..||.+..|+-
T Consensus 707 D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccEEEEeecCCC
Confidence 8 888999888873
No 488
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=38.27 E-value=49 Score=28.65 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=31.3
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCC
Q 044036 530 SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTP 567 (875)
Q Consensus 530 ~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~ 567 (875)
..+.++++||..-.........|...|+++..++|++.
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999998766677778888999999999999964
No 489
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=37.99 E-value=2.3e+02 Score=31.71 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=16.6
Q ss_pred CcEEecCCCCchHHHHHHHHH
Q 044036 157 GGILGDDMGLGKTIQTIAFLA 177 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~ 177 (875)
..||.-..|.|||-.|=.++.
T Consensus 164 SmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred ceEEecCCCCchHHHHHHHHh
Confidence 558999999999987655554
No 490
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.86 E-value=1e+02 Score=36.98 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=21.3
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~ 178 (875)
..+|.+|.-+.|.|||+.|=++...
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhh
Confidence 4578999999999999998887764
No 491
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=37.86 E-value=94 Score=37.04 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=48.5
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhcCCcEEEEeCCC
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGPN 233 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~~~~v~v~~G~~ 233 (875)
..+|.+|--+.|.|||..|=|+...+ .-|++=|.-+.++.. +.|..
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel-------------------~vPf~~isApeivSG---------------vSGES 267 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGEL-------------------GVPFLSISAPEIVSG---------------VSGES 267 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhc-------------------CCceEeecchhhhcc---------------cCccc
Confidence 34788888899999999988877654 334555544444433 45655
Q ss_pred hhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccC
Q 044036 234 RDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 234 r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn 281 (875)
.+.+.+-+.... ...+.+|+|||.+-|..
T Consensus 268 EkkiRelF~~A~-------------------~~aPcivFiDeIDAI~p 296 (802)
T KOG0733|consen 268 EKKIRELFDQAK-------------------SNAPCIVFIDEIDAITP 296 (802)
T ss_pred HHHHHHHHHHHh-------------------ccCCeEEEeeccccccc
Confidence 555544443321 23467899999998854
No 492
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=37.79 E-value=66 Score=30.12 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=29.8
Q ss_pred hcCCCeEEEEecc-hhHHHHHHHHHHHcCCcEEEEeCCCC
Q 044036 529 ASKGDKILLFSYS-VRMLDILEKFLIRKGYSFSRLDGSTP 567 (875)
Q Consensus 529 ~~~g~KVLIFs~~-~~~ld~L~~~L~~~g~~~~~ldG~~~ 567 (875)
..++++|+|||+. -.........|...|+++..++|++.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 3567899999973 33445566788888999999999974
No 493
>PF12846 AAA_10: AAA-like domain
Probab=37.63 E-value=50 Score=35.41 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecchhHHHHH---HHHHHHcCCcEEEEeCCCCHHHHHHHHHHhc
Q 044036 518 MRALEKLMYSWASKGDKILLFSYSVRMLDIL---EKFLIRKGYSFSRLDGSTPSNLRQSLVDDFN 579 (875)
Q Consensus 518 l~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L---~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~ 579 (875)
...+.++++..++.|--+++-+|....+.-. ...+...+.. +-+.....+...+.+.|.
T Consensus 239 ~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~---i~~~~~~~~~~~l~~~~g 300 (304)
T PF12846_consen 239 AEFLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTK---IIFRLEDSDDAELAELFG 300 (304)
T ss_pred hhhhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcE---EEecCChHHHHHHHHHcC
Confidence 4457777888777888888888888665432 4455443332 223333333333555553
No 494
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.33 E-value=1.8e+02 Score=33.96 Aligned_cols=97 Identities=9% Similarity=0.114 Sum_probs=64.5
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEec
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIST 591 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt 591 (875)
+..+||--. -+|.-+. .+..+||.+.....+.-....|...|+....+.|..+..++..++.....+ ...+++++.
T Consensus 34 pTGsGKTl~--y~lp~l~-~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~-~~~il~~TP 109 (470)
T TIGR00614 34 PTGGGKSLC--YQLPALC-SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDG-KIKLLYVTP 109 (470)
T ss_pred CCCCcHhHH--HHHHHHH-cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECH
Confidence 567888532 2222222 355789999998887766777888899999999999999888888888554 445666665
Q ss_pred CCccccc-------CCCCCCEEEEcCCC
Q 044036 592 RAGGLGL-------NLVSANRVVIFDPN 612 (875)
Q Consensus 592 ~agg~GL-------NL~~An~VI~~D~~ 612 (875)
....... .+.....||+=+.+
T Consensus 110 e~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 110 EKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred HHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 5432222 34455666654433
No 495
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=37.00 E-value=2e+02 Score=31.43 Aligned_cols=26 Identities=8% Similarity=0.008 Sum_probs=22.1
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
.-++.-+-|.||+..|.+|+..++..
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~ 46 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKE 46 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCC
Confidence 44678888999999999999998764
No 496
>PRK04328 hypothetical protein; Provisional
Probab=36.50 E-value=64 Score=34.23 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=20.0
Q ss_pred CcEEecCCCCchHHHHHHHHHHHh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~ 180 (875)
-.++.-+.|+|||..+..|+...+
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~ 48 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGL 48 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 335788999999999999988754
No 497
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=36.46 E-value=39 Score=41.99 Aligned_cols=56 Identities=23% Similarity=0.166 Sum_probs=40.4
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS 209 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s 209 (875)
.|-|-|+++|... .+..++-...|+|||.+.+.-+.+++...+ .....+|+|+-+.
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~------------i~P~~IL~lTFT~ 59 (726)
T TIGR01073 4 HLNPEQREAVKTT------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN------------VAPWNILAITFTN 59 (726)
T ss_pred ccCHHHHHHHhCC------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC------------CCHHHeeeeeccH
Confidence 5888999999632 334566668899999999999998875432 1235688888764
No 498
>PRK06620 hypothetical protein; Validated
Probab=36.45 E-value=2.4e+02 Score=29.13 Aligned_cols=97 Identities=11% Similarity=0.167 Sum_probs=51.2
Q ss_pred EEEEcC-cchHHHHHHHHHH-hc--C-CcEEEEeCC---ChhHHHHHHHhCCceEEEeecccccccccccccccccEEEE
Q 044036 202 VLIICP-SSVIQNWEIEFSR-WS--T-FNVSIYHGP---NRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIV 273 (875)
Q Consensus 202 ~LIV~P-~sLl~qW~~E~~k-~~--~-~~v~v~~G~---~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIi 273 (875)
-.||.| .....++..++.. |. + .+..+++|. .+......+... .+..+++..... ...+. ..++++|
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~-~~~~~~~~~~~~--~~~~~--~~d~lli 91 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNL-SNAYIIKDIFFN--EEILE--KYNAFII 91 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhc-cCCEEcchhhhc--hhHHh--cCCEEEE
Confidence 478888 4456666666554 53 2 244566664 455555544332 233333322111 11111 3489999
Q ss_pred cCCccccCcccHHHHHHHhc-cccceEEeecCC
Q 044036 274 DEAHRLKNEKSKLYMACLEL-KTRNRIGLTGTI 305 (875)
Q Consensus 274 DEAH~ikn~~S~~~kal~~l-~~~~rllLTGTP 305 (875)
||+|.+. .......+..+ .....+++|||-
T Consensus 92 Ddi~~~~--~~~lf~l~N~~~e~g~~ilits~~ 122 (214)
T PRK06620 92 EDIENWQ--EPALLHIFNIINEKQKYLLLTSSD 122 (214)
T ss_pred eccccch--HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 9999762 12333333333 455679999984
No 499
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=36.24 E-value=36 Score=37.76 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l 179 (875)
.|+|.+++-++|+|||..|+++...+
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHh
Confidence 45677899999999999999998876
No 500
>PRK15115 response regulator GlrR; Provisional
Probab=36.17 E-value=2.2e+02 Score=32.85 Aligned_cols=22 Identities=23% Similarity=0.287 Sum_probs=16.4
Q ss_pred CCCcEEecCCCCchHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFL 176 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall 176 (875)
....++.-+.|.|||..|-++-
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih 178 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIH 178 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHH
Confidence 4566788999999998655443
Done!