Query 044036
Match_columns 875
No_of_seqs 415 out of 2451
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:52:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 1.3E-77 4.4E-82 720.6 41.1 490 127-667 46-552 (644)
2 3mwy_W Chromo domain-containin 100.0 1.9E-76 6.4E-81 727.6 35.2 492 132-696 232-741 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 1.8E-70 6E-75 642.4 33.6 444 130-667 31-477 (500)
4 3dmq_A RNA polymerase-associat 100.0 2.2E-50 7.5E-55 503.2 27.0 441 132-664 149-636 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 4.5E-46 1.6E-50 430.8 24.8 463 134-661 7-493 (494)
6 2fwr_A DNA repair protein RAD2 100.0 3E-41 1E-45 391.8 19.6 378 134-660 91-471 (472)
7 1z5z_A Helicase of the SNF2/RA 100.0 1.6E-40 5.4E-45 355.9 18.9 235 370-667 13-248 (271)
8 4a2p_A RIG-I, retinoic acid in 100.0 7E-38 2.4E-42 370.3 29.5 459 135-665 6-529 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 1.2E-37 4E-42 383.7 30.3 465 129-665 239-770 (797)
10 3tbk_A RIG-I helicase domain; 100.0 9.2E-37 3.2E-41 360.2 34.3 455 136-664 4-527 (555)
11 4a2w_A RIG-I, retinoic acid in 100.0 2.9E-37 9.8E-42 384.6 28.4 461 127-665 237-770 (936)
12 2ykg_A Probable ATP-dependent 100.0 7.8E-34 2.7E-38 345.3 26.9 435 135-649 12-522 (696)
13 4gl2_A Interferon-induced heli 100.0 7.1E-34 2.4E-38 345.9 23.3 450 135-664 6-540 (699)
14 2oca_A DAR protein, ATP-depend 100.0 1E-33 3.6E-38 331.6 22.9 347 134-650 111-465 (510)
15 1xti_A Probable ATP-dependent 100.0 4.8E-31 1.6E-35 297.6 30.4 316 136-643 30-357 (391)
16 3h1t_A Type I site-specific re 100.0 6.4E-32 2.2E-36 322.1 22.8 357 134-640 176-558 (590)
17 1hv8_A Putative ATP-dependent 100.0 9.1E-31 3.1E-35 292.1 26.8 310 136-645 28-347 (367)
18 2j0s_A ATP-dependent RNA helic 100.0 6.1E-31 2.1E-35 299.1 25.7 318 136-645 59-385 (410)
19 3hgt_A HDA1 complex subunit 3; 100.0 1.2E-31 4.2E-36 286.8 18.5 216 384-652 21-246 (328)
20 1s2m_A Putative ATP-dependent 100.0 3.7E-30 1.3E-34 291.5 31.2 314 136-645 43-367 (400)
21 2z0m_A 337AA long hypothetical 100.0 5.8E-30 2E-34 282.3 23.0 308 136-652 16-333 (337)
22 2db3_A ATP-dependent RNA helic 100.0 4.9E-29 1.7E-33 285.9 29.1 317 136-642 78-406 (434)
23 3eiq_A Eukaryotic initiation f 100.0 4.9E-30 1.7E-34 291.6 20.4 316 136-643 62-387 (414)
24 3pey_A ATP-dependent RNA helic 100.0 3.6E-29 1.2E-33 282.0 26.8 314 135-642 26-355 (395)
25 1fuu_A Yeast initiation factor 100.0 1.5E-30 5.2E-35 293.6 13.1 315 135-643 42-366 (394)
26 2i4i_A ATP-dependent RNA helic 100.0 1.6E-28 5.5E-33 279.5 23.6 331 135-644 36-384 (417)
27 3fht_A ATP-dependent RNA helic 100.0 2.5E-27 8.6E-32 268.8 30.1 314 136-642 47-378 (412)
28 1oyw_A RECQ helicase, ATP-depe 100.0 3.6E-27 1.2E-31 276.1 27.4 300 136-636 25-338 (523)
29 3oiy_A Reverse gyrase helicase 100.0 9.8E-27 3.4E-31 265.0 27.4 299 135-640 20-362 (414)
30 2v1x_A ATP-dependent DNA helic 99.9 1.5E-26 5.2E-31 273.8 25.7 306 136-637 44-370 (591)
31 2eyq_A TRCF, transcription-rep 99.9 6E-26 2.1E-30 286.7 28.0 307 134-643 601-922 (1151)
32 3sqw_A ATP-dependent RNA helic 99.9 8.7E-26 3E-30 268.5 27.6 329 136-643 43-398 (579)
33 3i5x_A ATP-dependent RNA helic 99.9 1.5E-25 5E-30 265.7 26.0 328 136-643 94-449 (563)
34 3fho_A ATP-dependent RNA helic 99.9 1.4E-26 4.6E-31 270.8 10.2 313 136-642 141-469 (508)
35 2xgj_A ATP-dependent RNA helic 99.9 3.2E-24 1.1E-28 267.2 27.4 354 134-645 84-501 (1010)
36 1gm5_A RECG; helicase, replica 99.9 1.2E-25 4.1E-30 271.8 13.5 303 134-635 366-691 (780)
37 3fmp_B ATP-dependent RNA helic 99.9 1.3E-25 4.6E-30 260.7 12.5 315 135-642 113-445 (479)
38 3l9o_A ATP-dependent RNA helic 99.9 2.9E-23 9.9E-28 260.8 24.9 357 134-649 182-603 (1108)
39 2va8_A SSO2462, SKI2-type heli 99.9 2.3E-22 8E-27 244.9 27.5 326 136-644 30-409 (715)
40 2p6r_A Afuhel308 helicase; pro 99.9 5.3E-23 1.8E-27 249.9 18.5 320 136-647 25-392 (702)
41 2zj8_A DNA helicase, putative 99.9 1.6E-22 5.4E-27 246.4 22.7 319 136-647 23-391 (720)
42 4a4z_A Antiviral helicase SKI2 99.9 1.1E-21 3.8E-26 244.4 26.5 398 135-652 38-501 (997)
43 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 8.3E-22 2.8E-26 244.2 24.7 156 135-308 270-441 (1038)
44 4ddu_A Reverse gyrase; topoiso 99.9 8.2E-21 2.8E-25 238.5 24.7 271 136-613 78-388 (1104)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 9.4E-20 3.2E-24 229.0 20.5 145 137-306 58-226 (1054)
46 1tf5_A Preprotein translocase 99.8 9.6E-18 3.3E-22 199.4 26.7 116 515-634 415-538 (844)
47 1rif_A DAR protein, DNA helica 99.8 3.3E-19 1.1E-23 192.1 10.7 162 135-322 112-278 (282)
48 2hjv_A ATP-dependent RNA helic 99.8 3.1E-18 1.1E-22 168.9 15.2 124 514-643 19-142 (163)
49 1t5i_A C_terminal domain of A 99.8 3E-18 1E-22 170.6 15.0 123 514-642 15-137 (172)
50 2jgn_A DBX, DDX3, ATP-dependen 99.8 7.2E-19 2.5E-23 177.2 9.9 125 514-643 29-153 (185)
51 2v6i_A RNA helicase; membrane, 99.8 1.4E-18 4.9E-23 198.4 13.6 100 531-637 170-287 (431)
52 2fsf_A Preprotein translocase 99.8 1.2E-17 4E-22 198.1 21.3 115 516-634 425-576 (853)
53 1nkt_A Preprotein translocase 99.8 5.8E-17 2E-21 192.3 25.8 123 515-643 443-617 (922)
54 1yks_A Genome polyprotein [con 99.7 4.8E-18 1.7E-22 194.5 14.4 101 531-640 176-296 (440)
55 1fuk_A Eukaryotic initiation f 99.7 1.4E-17 4.8E-22 164.5 14.3 125 516-646 16-140 (165)
56 2z83_A Helicase/nucleoside tri 99.7 5.2E-18 1.8E-22 195.4 12.6 105 531-643 189-313 (459)
57 2jlq_A Serine protease subunit 99.7 9.8E-18 3.4E-22 192.7 14.7 94 531-631 187-300 (451)
58 2p6n_A ATP-dependent RNA helic 99.7 8.7E-18 3E-22 170.1 12.0 123 514-643 39-161 (191)
59 2fz4_A DNA repair protein RAD2 99.7 1.3E-17 4.6E-22 174.8 13.1 141 134-310 91-233 (237)
60 4f92_B U5 small nuclear ribonu 99.7 2.6E-16 9E-21 204.7 27.9 156 136-313 926-1099(1724)
61 1c4o_A DNA nucleotide excision 99.7 7.9E-16 2.7E-20 184.5 28.9 125 516-645 423-552 (664)
62 3rc3_A ATP-dependent RNA helic 99.7 4.2E-17 1.5E-21 194.4 16.9 107 535-642 323-444 (677)
63 2wv9_A Flavivirin protease NS2 99.7 1E-17 3.5E-22 200.2 11.5 101 531-640 409-530 (673)
64 2rb4_A ATP-dependent RNA helic 99.7 5.9E-17 2E-21 161.6 14.0 124 516-645 20-149 (175)
65 3o8b_A HCV NS3 protease/helica 99.7 3.3E-17 1.1E-21 193.2 12.2 101 531-645 395-516 (666)
66 2whx_A Serine protease/ntpase/ 99.7 4.4E-17 1.5E-21 193.4 12.1 103 531-641 354-476 (618)
67 3eaq_A Heat resistant RNA depe 99.7 2.4E-16 8.4E-21 162.3 15.9 124 514-643 15-138 (212)
68 4f92_B U5 small nuclear ribonu 99.7 1.8E-15 6.3E-20 196.8 27.8 164 135-313 78-260 (1724)
69 2d7d_A Uvrabc system protein B 99.7 6.7E-15 2.3E-19 176.3 29.7 125 516-645 429-558 (661)
70 2yjt_D ATP-dependent RNA helic 99.5 4.1E-18 1.4E-22 169.2 0.0 123 515-643 15-137 (170)
71 3jux_A Protein translocase sub 99.7 1.6E-14 5.4E-19 168.0 27.1 124 515-644 457-588 (822)
72 2xau_A PRE-mRNA-splicing facto 99.6 1.2E-15 4.1E-20 185.6 18.5 110 531-645 302-445 (773)
73 2gxq_A Heat resistant RNA depe 99.6 1.1E-15 3.9E-20 156.1 15.0 157 136-306 23-186 (207)
74 1t6n_A Probable ATP-dependent 99.6 2.5E-15 8.5E-20 155.3 15.6 159 136-312 36-206 (220)
75 3b6e_A Interferon-induced heli 99.6 2.8E-16 9.6E-21 161.4 7.9 155 135-304 32-216 (216)
76 3i32_A Heat resistant RNA depe 99.6 4.6E-15 1.6E-19 160.4 16.2 125 514-644 12-136 (300)
77 1vec_A ATP-dependent RNA helic 99.6 1.2E-14 4E-19 148.5 14.7 153 136-305 25-187 (206)
78 1q0u_A Bstdead; DEAD protein, 99.6 6.2E-15 2.1E-19 152.3 12.2 159 136-312 26-197 (219)
79 2oxc_A Probable ATP-dependent 99.6 1.5E-14 5.1E-19 150.7 14.9 152 136-305 46-208 (230)
80 2pl3_A Probable ATP-dependent 99.6 1.1E-14 3.6E-19 152.3 13.6 158 135-306 46-213 (236)
81 3ber_A Probable ATP-dependent 99.6 1.3E-14 4.6E-19 153.1 13.0 154 136-306 65-228 (249)
82 1wrb_A DJVLGB; RNA helicase, D 99.5 3.4E-14 1.1E-18 150.2 14.1 163 136-306 45-220 (253)
83 1qde_A EIF4A, translation init 99.5 3.3E-14 1.1E-18 147.2 13.2 153 136-306 36-197 (224)
84 3bor_A Human initiation factor 99.5 4.5E-14 1.6E-18 147.8 12.2 154 136-306 52-215 (237)
85 3iuy_A Probable ATP-dependent 99.5 1.4E-13 4.9E-18 142.9 13.2 159 136-305 42-208 (228)
86 3fe2_A Probable ATP-dependent 99.4 4.2E-13 1.4E-17 140.8 13.7 158 136-305 51-217 (242)
87 3ly5_A ATP-dependent RNA helic 99.4 4.4E-13 1.5E-17 142.5 14.0 157 136-306 76-243 (262)
88 3dkp_A Probable ATP-dependent 99.4 2.9E-13 1E-17 142.2 10.9 154 136-305 51-220 (245)
89 2ipc_A Preprotein translocase 99.3 1.3E-10 4.3E-15 137.9 20.7 142 136-315 79-237 (997)
90 3fmo_B ATP-dependent RNA helic 99.2 3.1E-11 1.1E-15 130.8 12.9 154 135-306 113-278 (300)
91 2vl7_A XPD; helicase, unknown 99.2 1.6E-09 5.4E-14 127.0 23.6 81 530-616 382-466 (540)
92 3crv_A XPD/RAD3 related DNA he 98.6 8.1E-08 2.8E-12 112.9 11.7 127 136-281 3-187 (551)
93 3llm_A ATP-dependent RNA helic 98.6 1.2E-08 4.2E-13 106.2 3.2 150 136-306 61-219 (235)
94 4a15_A XPD helicase, ATP-depen 98.0 6.2E-06 2.1E-10 97.9 7.5 81 136-231 3-87 (620)
95 4b3f_X DNA-binding protein smu 97.5 0.00079 2.7E-08 80.4 15.7 151 132-307 185-401 (646)
96 2gk6_A Regulator of nonsense t 97.4 0.0017 5.9E-08 77.0 15.7 147 135-307 179-375 (624)
97 2wjy_A Regulator of nonsense t 97.2 0.0028 9.7E-08 77.0 14.6 147 135-307 355-551 (800)
98 3e1s_A Exodeoxyribonuclease V, 97.1 0.001 3.5E-08 78.0 10.1 132 134-308 187-318 (574)
99 2xzl_A ATP-dependent helicase 97.0 0.0048 1.6E-07 75.1 14.5 146 135-307 359-553 (802)
100 3upu_A ATP-dependent DNA helic 96.9 0.0049 1.7E-07 70.3 12.4 139 135-307 24-166 (459)
101 1w36_D RECD, exodeoxyribonucle 96.4 0.011 3.7E-07 69.9 11.5 146 138-310 151-303 (608)
102 2orw_A Thymidine kinase; TMTK, 95.9 0.013 4.4E-07 58.0 7.1 35 267-304 76-111 (184)
103 2o0j_A Terminase, DNA packagin 95.8 0.047 1.6E-06 60.3 11.9 153 135-318 162-324 (385)
104 2b8t_A Thymidine kinase; deoxy 95.2 0.018 6.3E-07 58.6 5.4 34 159-208 16-49 (223)
105 2j9r_A Thymidine kinase; TK1, 95.1 0.055 1.9E-06 54.5 8.8 34 160-209 33-66 (214)
106 3cpe_A Terminase, DNA packagin 94.9 0.11 3.6E-06 61.2 11.6 145 135-308 162-316 (592)
107 2orv_A Thymidine kinase; TP4A 94.4 0.087 3E-06 53.6 8.1 34 159-208 23-56 (234)
108 3vkw_A Replicase large subunit 94.4 0.042 1.4E-06 61.5 6.1 106 159-307 165-271 (446)
109 1xx6_A Thymidine kinase; NESG, 93.9 0.14 4.7E-06 50.8 8.1 34 159-208 12-45 (191)
110 4a15_A XPD helicase, ATP-depen 93.6 0.15 5E-06 60.3 9.2 77 531-613 447-527 (620)
111 3lfu_A DNA helicase II; SF1 he 93.2 0.17 5.8E-06 59.9 9.0 71 133-221 6-77 (647)
112 1a5t_A Delta prime, HOLB; zinc 92.8 0.45 1.5E-05 51.4 10.9 46 137-182 3-51 (334)
113 3syl_A Protein CBBX; photosynt 92.6 0.42 1.4E-05 50.6 10.2 24 157-180 69-92 (309)
114 3ec2_A DNA replication protein 91.1 1.3 4.4E-05 42.7 11.0 42 139-180 17-63 (180)
115 1l8q_A Chromosomal replication 91.0 1 3.4E-05 48.2 11.0 26 155-180 37-62 (324)
116 3u61_B DNA polymerase accessor 90.5 0.34 1.2E-05 51.9 6.7 41 267-307 105-147 (324)
117 3e2i_A Thymidine kinase; Zn-bi 90.3 0.59 2E-05 47.0 7.6 35 159-209 32-66 (219)
118 4b4t_J 26S protease regulatory 90.0 0.4 1.4E-05 53.0 6.8 46 154-218 181-226 (405)
119 3vfd_A Spastin; ATPase, microt 89.9 0.43 1.5E-05 52.7 7.1 41 155-214 148-188 (389)
120 3bos_A Putative DNA replicatio 89.8 1.3 4.3E-05 44.5 10.1 26 155-180 52-77 (242)
121 2p65_A Hypothetical protein PF 88.9 1.5 5.3E-05 41.8 9.5 27 155-181 43-69 (187)
122 1w4r_A Thymidine kinase; type 88.9 0.77 2.6E-05 45.4 7.2 34 267-304 91-125 (195)
123 3eie_A Vacuolar protein sortin 88.4 0.38 1.3E-05 51.7 5.0 24 156-179 52-75 (322)
124 1njg_A DNA polymerase III subu 88.4 2.5 8.5E-05 42.0 11.0 43 138-180 28-70 (250)
125 2bjv_A PSP operon transcriptio 88.3 1.7 5.9E-05 44.8 10.0 26 153-178 27-52 (265)
126 2qp9_X Vacuolar protein sortin 87.7 0.45 1.5E-05 51.9 5.2 24 156-179 85-108 (355)
127 1jbk_A CLPB protein; beta barr 87.6 2 6.7E-05 41.1 9.3 25 156-180 44-68 (195)
128 3h4m_A Proteasome-activating n 87.0 0.34 1.2E-05 50.7 3.6 26 154-179 50-75 (285)
129 3n70_A Transport activator; si 86.8 0.63 2.1E-05 43.5 4.9 25 153-177 22-46 (145)
130 2chg_A Replication factor C sm 86.6 3.2 0.00011 40.6 10.5 24 157-180 40-63 (226)
131 3crv_A XPD/RAD3 related DNA he 86.6 3.5 0.00012 47.7 12.2 86 519-613 379-473 (551)
132 1iqp_A RFCS; clamp loader, ext 86.5 2.3 8E-05 44.9 10.0 24 157-180 48-71 (327)
133 2z4s_A Chromosomal replication 85.8 3.8 0.00013 45.9 11.6 26 155-180 130-155 (440)
134 1ofh_A ATP-dependent HSL prote 85.1 1.8 6.1E-05 45.5 8.1 25 155-179 50-74 (310)
135 2qz4_A Paraplegin; AAA+, SPG7, 84.8 1.5 5.2E-05 44.8 7.2 25 155-179 39-63 (262)
136 2qby_B CDC6 homolog 3, cell di 84.5 4.8 0.00016 43.6 11.5 43 138-180 25-70 (384)
137 3cf0_A Transitional endoplasmi 84.0 3.6 0.00012 43.4 9.8 26 154-179 48-73 (301)
138 1jr3_A DNA polymerase III subu 84.0 2.2 7.6E-05 46.1 8.5 23 158-180 41-63 (373)
139 1xwi_A SKD1 protein; VPS4B, AA 83.9 1.8 6.1E-05 46.4 7.5 24 156-179 46-69 (322)
140 1sxj_A Activator 1 95 kDa subu 83.7 3.5 0.00012 47.2 10.2 24 156-179 78-101 (516)
141 4b4t_H 26S protease regulatory 83.6 1.1 3.9E-05 50.2 5.8 45 154-217 242-286 (467)
142 1ojl_A Transcriptional regulat 83.4 2.6 9E-05 44.7 8.4 27 153-179 23-49 (304)
143 2zan_A Vacuolar protein sortin 81.5 1.1 3.6E-05 50.6 4.6 42 155-214 167-208 (444)
144 1sxj_D Activator 1 41 kDa subu 81.5 1.1 3.7E-05 48.2 4.6 24 156-179 59-82 (353)
145 4b4t_I 26S protease regulatory 81.4 2 6.9E-05 47.7 6.7 44 155-217 216-259 (437)
146 3hjh_A Transcription-repair-co 79.6 3.9 0.00013 46.4 8.4 66 531-610 381-446 (483)
147 2v1u_A Cell division control p 79.4 4.3 0.00015 43.9 8.6 42 138-179 24-68 (387)
148 2gno_A DNA polymerase III, gam 79.0 7.7 0.00026 41.0 10.2 38 141-178 2-41 (305)
149 4b4t_L 26S protease subunit RP 78.8 1.4 4.9E-05 49.2 4.5 44 155-217 215-258 (437)
150 1fnn_A CDC6P, cell division co 78.1 14 0.00047 39.9 12.2 23 157-179 46-68 (389)
151 4fcw_A Chaperone protein CLPB; 77.5 3 0.0001 43.9 6.4 24 157-180 49-72 (311)
152 3co5_A Putative two-component 77.1 1.6 5.4E-05 40.5 3.6 23 153-175 25-47 (143)
153 3cf2_A TER ATPase, transitiona 76.7 3.7 0.00013 49.4 7.5 41 155-214 511-551 (806)
154 3t15_A Ribulose bisphosphate c 75.7 1.6 5.4E-05 46.1 3.6 24 156-179 37-60 (293)
155 1gm5_A RECG; helicase, replica 75.3 8.2 0.00028 46.5 10.1 99 512-612 397-500 (780)
156 1sxj_B Activator 1 37 kDa subu 74.6 2.2 7.4E-05 45.1 4.3 23 158-180 45-67 (323)
157 2kjq_A DNAA-related protein; s 74.4 5.8 0.0002 37.1 6.8 26 154-179 35-60 (149)
158 1xp8_A RECA protein, recombina 74.0 4.6 0.00016 44.0 6.8 46 154-215 73-118 (366)
159 3d8b_A Fidgetin-like protein 1 73.9 1.6 5.5E-05 47.5 3.1 25 155-179 117-141 (357)
160 3hu3_A Transitional endoplasmi 72.7 3 0.0001 47.4 5.1 25 154-178 237-261 (489)
161 3pvs_A Replication-associated 72.4 4.8 0.00016 45.2 6.7 23 157-179 52-74 (447)
162 1g5t_A COB(I)alamin adenosyltr 72.0 9.2 0.00031 37.7 7.7 57 261-320 114-174 (196)
163 3oiy_A Reverse gyrase helicase 71.7 13 0.00045 40.6 10.1 98 511-609 43-146 (414)
164 2r62_A Cell division protease 71.7 1.3 4.3E-05 45.8 1.6 25 155-179 44-68 (268)
165 1d2n_A N-ethylmaleimide-sensit 71.4 9.2 0.00031 39.3 8.2 24 156-179 65-88 (272)
166 3k1j_A LON protease, ATP-depen 71.3 8.7 0.0003 44.9 8.8 69 143-213 48-116 (604)
167 3b9p_A CG5977-PA, isoform A; A 71.3 8.2 0.00028 40.2 7.9 25 155-179 54-78 (297)
168 2zr9_A Protein RECA, recombina 71.0 5.8 0.0002 42.9 6.7 44 155-214 61-104 (349)
169 2ce7_A Cell division protein F 70.7 5.5 0.00019 45.0 6.6 25 155-179 49-73 (476)
170 3dm5_A SRP54, signal recogniti 70.3 12 0.00041 41.8 9.1 22 159-180 104-125 (443)
171 2chq_A Replication factor C sm 69.5 2.5 8.6E-05 44.5 3.4 24 157-180 40-63 (319)
172 1sxj_E Activator 1 40 kDa subu 68.2 23 0.00077 37.7 10.8 41 141-181 19-62 (354)
173 2cvh_A DNA repair and recombin 67.5 23 0.00079 34.5 9.9 24 154-177 19-42 (220)
174 3kl4_A SRP54, signal recogniti 66.8 17 0.00058 40.5 9.4 22 159-180 101-122 (433)
175 3pfi_A Holliday junction ATP-d 65.6 33 0.0011 36.2 11.4 23 156-178 56-78 (338)
176 2w58_A DNAI, primosome compone 65.3 9.8 0.00033 37.0 6.5 25 156-180 55-79 (202)
177 1uaa_A REP helicase, protein ( 61.6 5.6 0.00019 47.1 4.6 69 136-222 2-71 (673)
178 2zpa_A Uncharacterized protein 61.3 22 0.00077 41.7 9.4 42 136-179 175-216 (671)
179 2qby_A CDC6 homolog 1, cell di 60.9 10 0.00035 40.7 6.3 42 138-179 25-69 (386)
180 1pjr_A PCRA; DNA repair, DNA r 60.8 9.7 0.00033 45.5 6.5 70 134-221 9-79 (724)
181 1u6t_A SH3 domain-binding glut 60.4 12 0.00042 33.7 5.5 45 535-579 2-53 (121)
182 3sxu_A DNA polymerase III subu 60.3 67 0.0023 29.9 10.9 111 515-657 22-136 (150)
183 1qvr_A CLPB protein; coiled co 59.7 27 0.00091 42.6 10.2 26 155-180 191-216 (854)
184 1u94_A RECA protein, recombina 59.5 12 0.0004 40.6 6.3 27 154-180 62-88 (356)
185 1um8_A ATP-dependent CLP prote 58.6 17 0.00057 39.4 7.5 25 155-179 72-96 (376)
186 2zts_A Putative uncharacterize 58.3 7.6 0.00026 39.0 4.4 50 156-220 31-80 (251)
187 3ipz_A Monothiol glutaredoxin- 57.1 26 0.00091 30.5 7.2 67 522-590 8-80 (109)
188 2px0_A Flagellar biosynthesis 57.0 23 0.00077 37.2 7.8 21 160-180 110-130 (296)
189 4b4t_M 26S protease regulatory 55.8 4.5 0.00015 45.1 2.2 44 155-217 215-258 (434)
190 4b4t_K 26S protease regulatory 55.3 8.8 0.0003 42.7 4.5 42 155-215 206-247 (428)
191 3zyw_A Glutaredoxin-3; metal b 55.0 31 0.001 30.3 7.2 59 531-590 14-78 (111)
192 2wul_A Glutaredoxin related pr 55.0 43 0.0015 29.9 8.2 64 519-588 11-82 (118)
193 2j48_A Two-component sensor ki 54.3 18 0.00062 30.6 5.6 91 531-627 24-117 (119)
194 2eyq_A TRCF, transcription-rep 53.9 37 0.0013 42.8 10.3 97 511-608 631-731 (1151)
195 4ddu_A Reverse gyrase; topoiso 52.9 33 0.0011 43.0 9.6 79 512-591 101-182 (1104)
196 3gx8_A Monothiol glutaredoxin- 52.4 44 0.0015 29.8 8.0 58 532-590 15-81 (121)
197 3cmu_A Protein RECA, recombina 50.7 37 0.0013 45.0 9.7 52 153-222 1425-1476(2050)
198 3hr8_A Protein RECA; alpha and 50.2 22 0.00076 38.4 6.5 39 159-213 65-103 (356)
199 2wem_A Glutaredoxin-related pr 50.0 54 0.0019 29.1 8.1 65 520-590 12-83 (118)
200 3pxi_A Negative regulator of g 49.9 17 0.00057 43.7 6.1 23 158-180 524-546 (758)
201 2dhr_A FTSH; AAA+ protein, hex 49.7 48 0.0016 37.5 9.5 23 156-178 65-87 (499)
202 2yan_A Glutaredoxin-3; oxidore 49.1 74 0.0025 27.1 8.7 64 524-589 9-78 (105)
203 2r8r_A Sensor protein; KDPD, P 47.4 17 0.00057 36.7 4.6 25 157-181 8-32 (228)
204 2lqo_A Putative glutaredoxin R 47.1 62 0.0021 27.3 7.6 57 533-589 4-61 (92)
205 2qgz_A Helicase loader, putati 47.0 20 0.00067 37.9 5.4 26 155-180 152-177 (308)
206 1wp9_A ATP-dependent RNA helic 46.2 50 0.0017 36.1 9.0 94 511-610 30-133 (494)
207 2rb4_A ATP-dependent RNA helic 46.1 58 0.002 30.6 8.3 54 198-252 33-91 (175)
208 3g5j_A Putative ATP/GTP bindin 45.9 30 0.001 30.8 5.9 50 517-567 74-125 (134)
209 1r6b_X CLPA protein; AAA+, N-t 45.4 53 0.0018 39.2 9.6 26 155-180 207-232 (758)
210 1t6n_A Probable ATP-dependent 45.0 1.3E+02 0.0044 29.1 11.0 66 512-577 59-132 (220)
211 2l82_A Designed protein OR32; 44.9 69 0.0024 27.6 7.3 47 535-581 5-51 (162)
212 3nhm_A Response regulator; pro 43.8 72 0.0025 27.6 8.1 91 531-627 26-121 (133)
213 2hjv_A ATP-dependent RNA helic 43.5 86 0.0029 29.0 8.9 54 198-252 34-92 (163)
214 1t5i_A C_terminal domain of A 43.4 74 0.0025 29.9 8.5 54 198-252 30-88 (172)
215 1n0w_A DNA repair protein RAD5 42.4 1.1E+02 0.0038 30.0 10.1 24 156-179 25-48 (243)
216 3a10_A Response regulator; pho 42.3 56 0.0019 27.6 6.9 88 532-626 25-115 (116)
217 2oxc_A Probable ATP-dependent 42.1 95 0.0033 30.5 9.5 63 512-574 69-139 (230)
218 1zu4_A FTSY; GTPase, signal re 42.0 63 0.0022 34.2 8.5 21 160-180 110-130 (320)
219 3cf2_A TER ATPase, transitiona 41.1 14 0.00047 44.6 3.3 24 155-178 238-261 (806)
220 2r2a_A Uncharacterized protein 40.8 12 0.0004 36.9 2.3 21 159-179 9-29 (199)
221 3fe2_A Probable ATP-dependent 40.5 1.4E+02 0.0048 29.5 10.6 66 512-577 74-151 (242)
222 2c9o_A RUVB-like 1; hexameric 40.2 23 0.00079 39.5 4.9 42 138-179 42-87 (456)
223 2j37_W Signal recognition part 39.7 65 0.0022 36.4 8.5 21 160-180 106-126 (504)
224 3eaq_A Heat resistant RNA depe 39.4 92 0.0032 30.4 8.8 54 198-252 30-88 (212)
225 3i42_A Response regulator rece 39.4 37 0.0013 29.4 5.3 103 519-630 17-124 (127)
226 3gk5_A Uncharacterized rhodane 38.7 30 0.001 30.0 4.4 46 521-567 45-90 (108)
227 1gku_B Reverse gyrase, TOP-RG; 38.7 68 0.0023 40.0 9.2 78 511-591 78-163 (1054)
228 1fuk_A Eukaryotic initiation f 38.3 1.1E+02 0.0038 28.3 8.8 55 198-253 29-88 (165)
229 3ber_A Probable ATP-dependent 38.3 1.5E+02 0.0051 29.6 10.4 92 512-608 88-192 (249)
230 2p6n_A ATP-dependent RNA helic 38.0 93 0.0032 29.9 8.4 53 199-252 54-111 (191)
231 2r44_A Uncharacterized protein 37.9 18 0.0006 38.3 3.3 36 144-179 35-70 (331)
232 3u4q_A ATP-dependent helicase/ 37.8 40 0.0014 42.8 7.1 63 133-211 7-69 (1232)
233 1r6b_X CLPA protein; AAA+, N-t 37.4 88 0.003 37.2 9.8 23 157-179 490-512 (758)
234 3io5_A Recombination and repai 37.3 68 0.0023 34.0 7.6 38 159-210 32-69 (333)
235 3uk6_A RUVB-like 2; hexameric 37.2 39 0.0013 36.0 6.0 43 137-179 48-94 (368)
236 1wik_A Thioredoxin-like protei 36.9 70 0.0024 27.5 6.6 58 532-590 14-77 (109)
237 2jgn_A DBX, DDX3, ATP-dependen 36.9 65 0.0022 30.8 7.0 55 198-252 45-103 (185)
238 3lte_A Response regulator; str 36.3 51 0.0017 28.6 5.8 29 532-560 6-34 (132)
239 1xti_A Probable ATP-dependent 35.9 1.5E+02 0.0052 31.3 10.7 95 511-609 52-159 (391)
240 2v6i_A RNA helicase; membrane, 35.9 47 0.0016 36.7 6.5 54 199-253 171-225 (431)
241 3cg4_A Response regulator rece 35.8 1.2E+02 0.0041 26.5 8.4 28 532-559 7-34 (142)
242 3h8k_B Autocrine motility fact 35.5 21 0.00071 23.3 2.0 12 854-865 1-12 (28)
243 4ehx_A Tetraacyldisaccharide 4 34.8 64 0.0022 34.0 7.0 82 165-251 48-137 (315)
244 4dzz_A Plasmid partitioning pr 34.7 1.3E+02 0.0043 28.7 8.8 21 160-180 7-27 (206)
245 3iuy_A Probable ATP-dependent 34.3 1.1E+02 0.0037 29.9 8.4 61 512-572 65-137 (228)
246 2wci_A Glutaredoxin-4; redox-a 34.2 87 0.003 28.5 7.0 57 533-590 35-97 (135)
247 1yks_A Genome polyprotein [con 34.2 36 0.0012 37.8 5.2 54 199-253 177-231 (440)
248 3grc_A Sensor protein, kinase; 34.1 79 0.0027 27.7 6.7 26 533-558 7-32 (140)
249 2pl3_A Probable ATP-dependent 34.0 1.5E+02 0.0052 28.9 9.6 62 512-573 70-142 (236)
250 3cmu_A Protein RECA, recombina 33.5 67 0.0023 42.6 8.1 48 152-215 729-776 (2050)
251 1t1v_A SH3BGRL3, SH3 domain-bi 32.8 57 0.002 27.1 5.2 57 534-590 3-67 (93)
252 3h5i_A Response regulator/sens 32.5 1.3E+02 0.0043 26.4 7.9 28 533-560 6-33 (140)
253 1lv7_A FTSH; alpha/beta domain 32.4 41 0.0014 33.8 5.0 25 155-179 45-69 (257)
254 2xxa_A Signal recognition part 32.1 56 0.0019 36.2 6.3 21 160-180 105-125 (433)
255 3cmw_A Protein RECA, recombina 31.4 54 0.0018 42.8 6.7 28 153-180 730-757 (1706)
256 3ly5_A ATP-dependent RNA helic 31.3 2.4E+02 0.0081 28.3 10.7 91 512-608 99-207 (262)
257 3bh0_A DNAB-like replicative h 30.3 61 0.0021 34.1 6.0 48 145-208 58-105 (315)
258 3f6p_A Transcriptional regulat 30.2 98 0.0034 26.4 6.5 36 555-590 45-80 (120)
259 1qde_A EIF4A, translation init 30.0 1E+02 0.0036 29.8 7.4 60 512-571 59-125 (224)
260 1vma_A Cell division protein F 30.0 89 0.0031 32.7 7.2 20 160-179 109-128 (306)
261 2ct6_A SH3 domain-binding glut 29.8 1E+02 0.0036 26.6 6.5 47 532-578 7-60 (111)
262 2gxq_A Heat resistant RNA depe 29.8 1.9E+02 0.0066 27.3 9.3 64 512-575 46-117 (207)
263 2ffh_A Protein (FFH); SRP54, s 29.7 1.1E+02 0.0037 33.8 8.0 21 160-180 103-123 (425)
264 3bgw_A DNAB-like replicative h 29.5 33 0.0011 38.2 3.9 49 144-208 186-234 (444)
265 2dr3_A UPF0273 protein PH0284; 29.3 49 0.0017 32.7 4.8 48 155-218 23-70 (247)
266 1byi_A Dethiobiotin synthase; 29.2 39 0.0013 33.1 4.0 22 159-180 6-27 (224)
267 1gmx_A GLPE protein; transfera 28.8 73 0.0025 27.2 5.3 46 521-567 48-94 (108)
268 1tue_A Replication protein E1; 28.8 36 0.0012 33.7 3.5 24 157-180 60-83 (212)
269 3hix_A ALR3790 protein; rhodan 28.7 66 0.0023 27.5 5.0 38 530-567 50-88 (106)
270 2v1x_A ATP-dependent DNA helic 28.6 1.4E+02 0.0048 34.4 9.1 78 512-592 67-145 (591)
271 3foj_A Uncharacterized protein 28.4 46 0.0016 28.2 3.8 36 531-566 55-90 (100)
272 3of5_A Dethiobiotin synthetase 27.7 34 0.0012 34.3 3.2 25 159-183 9-33 (228)
273 1wv9_A Rhodanese homolog TT165 27.2 46 0.0016 27.7 3.6 35 533-567 54-88 (94)
274 3eme_A Rhodanese-like domain p 27.0 46 0.0016 28.3 3.6 37 530-566 54-90 (103)
275 2q6t_A DNAB replication FORK h 27.0 65 0.0022 35.7 5.7 56 145-215 190-245 (444)
276 4a1f_A DNAB helicase, replicat 26.8 40 0.0014 36.1 3.7 48 145-208 36-83 (338)
277 2jtq_A Phage shock protein E; 26.6 1.1E+02 0.0039 24.6 5.9 45 521-566 29-75 (85)
278 2z43_A DNA repair and recombin 26.5 2.3E+02 0.0079 29.5 9.8 25 155-179 107-131 (324)
279 3n53_A Response regulator rece 26.5 3.1E+02 0.011 23.6 9.7 56 533-592 27-85 (140)
280 3te6_A Regulatory protein SIR3 26.3 64 0.0022 34.1 5.2 44 138-181 25-71 (318)
281 3qxc_A Dethiobiotin synthetase 26.3 38 0.0013 34.4 3.3 24 159-182 26-49 (242)
282 3oaa_A ATP synthase subunit al 26.3 2.2E+02 0.0074 32.1 9.6 63 143-223 151-217 (513)
283 4a2q_A RIG-I, retinoic acid in 26.2 95 0.0033 37.2 7.4 63 510-572 269-340 (797)
284 1ls1_A Signal recognition part 26.1 96 0.0033 32.2 6.5 21 160-180 103-123 (295)
285 4a2p_A RIG-I, retinoic acid in 26.1 80 0.0028 35.5 6.5 93 511-608 29-136 (556)
286 3qmx_A Glutaredoxin A, glutare 25.5 2.7E+02 0.0093 23.3 8.3 60 531-590 14-74 (99)
287 3kjh_A CO dehydrogenase/acetyl 25.5 36 0.0012 33.8 3.0 19 162-180 7-25 (254)
288 3tbk_A RIG-I helicase domain; 25.4 66 0.0023 36.1 5.6 61 511-571 26-95 (555)
289 2yxb_A Coenzyme B12-dependent 25.4 1.6E+02 0.0053 27.6 7.3 58 531-592 17-78 (161)
290 3eqz_A Response regulator; str 25.2 1.9E+02 0.0066 24.6 7.7 74 557-630 47-127 (135)
291 3h5i_A Response regulator/sens 25.2 1.2E+02 0.0041 26.6 6.3 103 519-627 19-123 (140)
292 3iwh_A Rhodanese-like domain p 25.1 44 0.0015 28.8 3.0 37 530-566 54-90 (103)
293 3dmn_A Putative DNA helicase; 25.1 1.8E+02 0.0062 27.3 7.8 77 520-613 49-125 (174)
294 2wv9_A Flavivirin protease NS2 25.0 60 0.0021 38.2 5.2 54 199-253 410-464 (673)
295 2qe7_A ATP synthase subunit al 24.9 1.4E+02 0.0049 33.5 7.9 62 144-223 152-217 (502)
296 2fsx_A RV0390, COG0607: rhodan 24.6 89 0.003 28.5 5.3 38 530-567 78-116 (148)
297 4b3f_X DNA-binding protein smu 24.6 93 0.0032 36.3 6.7 52 512-563 213-264 (646)
298 2gkg_A Response regulator homo 24.1 82 0.0028 26.8 4.8 27 534-560 7-33 (127)
299 3i32_A Heat resistant RNA depe 24.1 2.3E+02 0.0079 29.4 9.1 54 199-253 28-86 (300)
300 3fgn_A Dethiobiotin synthetase 23.9 44 0.0015 34.1 3.3 24 159-182 31-54 (251)
301 1cp2_A CP2, nitrogenase iron p 23.7 47 0.0016 33.6 3.5 19 163-181 9-27 (269)
302 1oyw_A RECQ helicase, ATP-depe 22.8 2E+02 0.007 32.3 9.0 77 512-592 48-124 (523)
303 2r9v_A ATP synthase subunit al 22.7 1.4E+02 0.0049 33.6 7.3 63 143-223 164-230 (515)
304 3hdv_A Response regulator; PSI 22.7 1.2E+02 0.0041 26.3 5.7 29 532-560 7-35 (136)
305 3cnb_A DNA-binding response re 22.5 1.9E+02 0.0066 25.0 7.2 91 532-628 33-130 (143)
306 3hws_A ATP-dependent CLP prote 22.2 71 0.0024 34.1 4.7 25 155-179 51-75 (363)
307 1g3q_A MIND ATPase, cell divis 22.1 56 0.0019 32.2 3.6 22 159-180 7-28 (237)
308 3nbx_X ATPase RAVA; AAA+ ATPas 22.0 40 0.0014 38.2 2.7 36 143-178 29-64 (500)
309 2rjn_A Response regulator rece 22.0 1.9E+02 0.0065 25.7 7.1 85 531-622 6-98 (154)
310 2whx_A Serine protease/ntpase/ 21.8 1.1E+02 0.0038 35.5 6.5 54 199-253 355-409 (618)
311 2ck3_A ATP synthase subunit al 21.6 2E+02 0.0068 32.4 8.2 71 143-223 151-225 (510)
312 1q57_A DNA primase/helicase; d 21.4 45 0.0016 37.6 3.0 42 152-208 239-280 (503)
313 3iqw_A Tail-anchored protein t 21.3 62 0.0021 34.4 3.9 22 159-180 20-41 (334)
314 2r6a_A DNAB helicase, replicat 21.2 91 0.0031 34.6 5.5 49 145-208 193-241 (454)
315 1hv8_A Putative ATP-dependent 21.0 3.4E+02 0.012 28.0 9.9 91 512-608 52-153 (367)
316 1sxj_C Activator 1 40 kDa subu 20.9 83 0.0028 33.1 4.9 39 142-180 31-71 (340)
317 2w0m_A SSO2452; RECA, SSPF, un 20.9 67 0.0023 31.2 3.9 25 155-179 23-47 (235)
318 3ea0_A ATPase, para family; al 20.9 87 0.003 30.9 4.8 24 159-182 9-32 (245)
319 1zgz_A Torcad operon transcrip 20.9 1.2E+02 0.004 25.7 5.2 25 534-558 4-28 (122)
320 2q5c_A NTRC family transcripti 20.8 2.2E+02 0.0074 27.6 7.5 92 532-630 4-95 (196)
321 3kht_A Response regulator; PSI 20.6 1.3E+02 0.0043 26.5 5.5 28 532-559 5-32 (144)
322 3nhv_A BH2092 protein; alpha-b 20.6 87 0.003 28.6 4.3 37 531-567 71-109 (144)
323 2qen_A Walker-type ATPase; unk 20.4 61 0.0021 33.9 3.7 38 137-177 16-53 (350)
324 2qxy_A Response regulator; reg 20.1 1.3E+02 0.0043 26.4 5.3 25 534-558 6-30 (142)
325 3q9l_A Septum site-determining 20.1 64 0.0022 32.2 3.6 22 159-180 7-28 (260)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-77 Score=720.62 Aligned_cols=490 Identities=32% Similarity=0.551 Sum_probs=406.8
Q ss_pred ccCCchhhhcccHHHHHHHHHHHHHh-----hCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCc
Q 044036 127 IQVPASINCRLLEHQREGVKFLYKLY-----KNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGY 201 (875)
Q Consensus 127 ~~vP~~i~~~L~pyQ~~gv~~l~~~~-----~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (875)
+.+|+.+...|||||++||+||+..+ ..+.||||||+||+|||+|+|+++..++...+.. ....++
T Consensus 46 ~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~---------~p~~~~ 116 (644)
T 1z3i_X 46 VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC---------KPEIDK 116 (644)
T ss_dssp EECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS---------SCSCSC
T ss_pred EeeChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc---------cCCCCc
Confidence 45778899999999999999999876 3567899999999999999999999887544221 123567
Q ss_pred EEEEcCcchHHHHHHHHHHhcC--CcEEEEeCCChhHHHHHH---Hh-----CCceEEEeecccccccccccccccccEE
Q 044036 202 VLIICPSSVIQNWEIEFSRWST--FNVSIYHGPNRDMILEKL---EA-----CGVEVLITSFDSYRIHGSILSEVNWEIV 271 (875)
Q Consensus 202 ~LIV~P~sLl~qW~~E~~k~~~--~~v~v~~G~~r~~~~~~~---~~-----~~~~VvItTy~~l~~~~~~l~~~~w~~V 271 (875)
+|||||.+++.||.+||.+|++ ..++.++|..+......+ .. ..++|+|+||++++.+...+....|++|
T Consensus 117 ~LiV~P~sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~v 196 (644)
T 1z3i_X 117 VIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLV 196 (644)
T ss_dssp EEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEE
T ss_pred EEEEecHHHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEE
Confidence 9999999999999999999987 556666665543322222 11 1468999999999998888888999999
Q ss_pred EEcCCccccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHH
Q 044036 272 IVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERF 351 (875)
Q Consensus 272 IiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~ 351 (875)
|+||||++||..++.++++..+.+.+||+|||||+||++.|||+|++|++|+.+++...|...|..|+..+....++...
T Consensus 197 I~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~ 276 (644)
T 1z3i_X 197 ICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKD 276 (644)
T ss_dssp EETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHH
T ss_pred EEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhH
Q 044036 352 IRIADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQV 431 (875)
Q Consensus 352 ~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 431 (875)
...+..+...|+.++.+|++||++.++.. .+|++.+.+++|+||+.|+.+|+.++........+.
T Consensus 277 ~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~-------------- 341 (644)
T 1z3i_X 277 RAAGEQKLQELISIVNRCLIRRTSDILSK-YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ-------------- 341 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHEECCCGGGGGG-TSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHhh-hCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 77778888999999999999999986654 568999999999999999999999876432111000
Q ss_pred HHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCC
Q 044036 432 ECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSD 511 (875)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (875)
.+ ......+..+..|+++|+||.++...... ....+....+.... ........
T Consensus 342 ---------~g---~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~ 394 (644)
T 1z3i_X 342 ---------TG---KISVSSLSSITSLKKLCNHPALIYEKCLT-----------GEEGFDGALDLFPQ----NYSTKAVE 394 (644)
T ss_dssp ---------TT---CCCHHHHHHHHHHHHHHHCTHHHHHHHHH-----------TCTTCTTGGGTSCS----SCCSSSCC
T ss_pred ---------cC---ccchhHHHHHHHHHHHhCCHHHHHHHHhc-----------ccchhhhHHhhccc----cccccccC
Confidence 00 11234678899999999999987421000 00000000000000 00001122
Q ss_pred cccCchHHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCC-ceEEEE
Q 044036 512 VKSCGKMRALEKLMYSWAS-KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPS-KQVFLI 589 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~-~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~-~~v~Li 589 (875)
+..|+|+..|..++..+.. .++|+||||+++.++++|+.+|...|+.+.+++|+++..+|++++++|++++. .++||+
T Consensus 395 ~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~ 474 (644)
T 1z3i_X 395 PQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFML 474 (644)
T ss_dssp GGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred cccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Confidence 4568999999999998864 68999999999999999999999999999999999999999999999999766 368999
Q ss_pred ecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCc
Q 044036 590 STRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK 667 (875)
Q Consensus 590 St~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~ 667 (875)
||++||+||||++|++||+||++|||+.+.||+||+||+||+++|.||+|++.||+||+|+++|..|+.+++.+++++
T Consensus 475 st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~ 552 (644)
T 1z3i_X 475 SSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEE 552 (644)
T ss_dssp EGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCS
T ss_pred ecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999865
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-76 Score=727.63 Aligned_cols=492 Identities=33% Similarity=0.525 Sum_probs=384.2
Q ss_pred hhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchH
Q 044036 132 SINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVI 211 (875)
Q Consensus 132 ~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl 211 (875)
..+..|||||++||+||+..+..+.||||||+||||||+|+|+++..++.. ....+|+|||||.+++
T Consensus 232 ~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~-------------~~~~~~~LIV~P~sll 298 (800)
T 3mwy_W 232 IKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFA-------------RRQNGPHIIVVPLSTM 298 (800)
T ss_dssp CCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHH-------------HSCCSCEEEECCTTTH
T ss_pred cCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHh-------------cCCCCCEEEEECchHH
Confidence 345799999999999999999999999999999999999999999877532 2357899999999999
Q ss_pred HHHHHHHHHhcC-CcEEEEeCCChhHHH-HHH-----------HhCCceEEEeecccccccccccccccccEEEEcCCcc
Q 044036 212 QNWEIEFSRWST-FNVSIYHGPNRDMIL-EKL-----------EACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHR 278 (875)
Q Consensus 212 ~qW~~E~~k~~~-~~v~v~~G~~r~~~~-~~~-----------~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ 278 (875)
.||.+||.+|+| +++.+|+|....... ... ....++|+||||+++..+...+..+.|++|||||||+
T Consensus 299 ~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 299 PAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHR 378 (800)
T ss_dssp HHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGG
T ss_pred HHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhh
Confidence 999999999997 899999998754322 111 2346789999999999998889999999999999999
Q ss_pred ccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHH
Q 044036 279 LKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADER 358 (875)
Q Consensus 279 ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~ 358 (875)
+||.+++.++++..+++.+||+|||||++|++.|||+|++|+.|+.|+....|...... . .....
T Consensus 379 lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~---------~------~~~~~ 443 (800)
T 3mwy_W 379 LKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD---------E------EQEEY 443 (800)
T ss_dssp GCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---------T------HHHHH
T ss_pred hcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccc---------h------hHHHH
Confidence 99999999999999999999999999999999999999999999999877666422111 0 12344
Q ss_pred HHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhcc
Q 044036 359 KQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLD 438 (875)
Q Consensus 359 ~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 438 (875)
...|+.++.++++||++.++... +|++.+.+++|+|++.|+.+|+.++...... +
T Consensus 444 ~~~L~~~l~p~~lRR~k~dv~~~-LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~-l----------------------- 498 (800)
T 3mwy_W 444 IHDLHRRIQPFILRRLKKDVEKS-LPSKTERILRVELSDVQTEYYKNILTKNYSA-L----------------------- 498 (800)
T ss_dssp HHHHHHTTGGGEEECCGGGGTTT-SCCEEEEEEEECCCHHHHHHHHHHHHHCCC--------------------------
T ss_pred HHHHHHHHhHHHhhhhHHhhhhc-cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHH-H-----------------------
Confidence 67799999999999999987654 6789999999999999999999887521100 0
Q ss_pred CCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchH
Q 044036 439 NLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKM 518 (875)
Q Consensus 439 ~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl 518 (875)
..........++..++.|+++|+||.++.... +.....++.. ....... .......|+|+
T Consensus 499 --~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~-----------~~~~~~~~~~------~~~~~~~-~~~l~~~s~K~ 558 (800)
T 3mwy_W 499 --TAGAKGGHFSLLNIMNELKKASNHPYLFDNAE-----------ERVLQKFGDG------KMTRENV-LRGLIMSSGKM 558 (800)
T ss_dssp ----------CTHHHHHHHHHHHHHCGGGSSSHH-----------HHHCCCC----------CCSHHH-HHHHHHTCHHH
T ss_pred --hhccccchhhHHHHHHHHHHHhcChhhhcchH-----------HHHHHhcccc------cccHHHH-HHHhhhcChHH
Confidence 00001112357888999999999999974310 0000000000 0000000 00113468999
Q ss_pred HHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCC-ceEEEEecCCcccc
Q 044036 519 RALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPS-KQVFLISTRAGGLG 597 (875)
Q Consensus 519 ~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~-~~v~LiSt~agg~G 597 (875)
.+|.++|..+...|+||||||+++.++++|+.+|...|+++.+++|+++..+|++++++|++++. .+|||+||++||+|
T Consensus 559 ~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~G 638 (800)
T 3mwy_W 559 VLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLG 638 (800)
T ss_dssp HHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTT
T ss_pred HHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999998654 46899999999999
Q ss_pred cCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCcc-hh-hhhhc
Q 044036 598 LNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGKL-EK-RYFEG 675 (875)
Q Consensus 598 LNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~~-~~-r~f~~ 675 (875)
|||+.||+||+||++|||+.+.||+||+||+||+++|.||+|+++||+||+|++++..|+.|.+.++++.. +. .+.+.
T Consensus 639 lNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~ 718 (800)
T 3mwy_W 639 INLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKK 718 (800)
T ss_dssp CCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------
T ss_pred CCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887532 21 22222
Q ss_pred cccchhhhhcc--cccchhhhhc
Q 044036 676 VQDCKEFQGEL--FGICNLFRDL 696 (875)
Q Consensus 676 v~~~~~~~gel--fg~~~lf~~~ 696 (875)
...++....++ ||..++|+..
T Consensus 719 ~~~~~~el~~ll~~g~~~~~~~~ 741 (800)
T 3mwy_W 719 NEPNAGELSAILKFGAGNMFTAT 741 (800)
T ss_dssp CCCCHHHHHHHHSSCSSSSCCSH
T ss_pred cCCCHHHHHHHHHcchHhhhhcc
Confidence 22222222223 7888888764
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.8e-70 Score=642.35 Aligned_cols=444 Identities=32% Similarity=0.559 Sum_probs=380.9
Q ss_pred CchhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc
Q 044036 130 PASINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS 209 (875)
Q Consensus 130 P~~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s 209 (875)
|..+...|+|||.+|+.||+..+..+.||||||+||+|||+++++++..+... ...+++|||||.+
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~--------------~~~~~~LIv~P~~ 96 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE--------------NELTPSLVICPLS 96 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT--------------TCCSSEEEEECST
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------------CCCCCEEEEccHH
Confidence 78889999999999999999888889999999999999999999999887532 2467899999999
Q ss_pred hHHHHHHHHHHhcC-CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHH
Q 044036 210 VIQNWEIEFSRWST-FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYM 288 (875)
Q Consensus 210 Ll~qW~~E~~k~~~-~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~k 288 (875)
|+.||.+||.+|++ .++.+++|..... ....++|+|+||+++..+.. +....|++||+||||+++|..++.++
T Consensus 97 l~~qw~~e~~~~~~~~~v~~~~g~~~~~-----~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~ 170 (500)
T 1z63_A 97 VLKNWEEELSKFAPHLRFAVFHEDRSKI-----KLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFK 170 (500)
T ss_dssp THHHHHHHHHHHCTTSCEEECSSSTTSC-----CGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHH
T ss_pred HHHHHHHHHHHHCCCceEEEEecCchhc-----cccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHH
Confidence 99999999999997 8899998876321 12357899999999987655 66789999999999999999999999
Q ss_pred HHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 044036 289 ACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRK 368 (875)
Q Consensus 289 al~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~ 368 (875)
++..+.+.++|+|||||++|++.|+|++++|++|+.+++...|...|..|+..+. ......|..++.+
T Consensus 171 ~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~------------~~~~~~l~~~l~~ 238 (500)
T 1z63_A 171 AVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD------------NMAKEELKAIISP 238 (500)
T ss_dssp HHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC------------HHHHHHHHHHHTT
T ss_pred HHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc------------HHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999987643 2234678899999
Q ss_pred HHHhhchhHH-hhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCC
Q 044036 369 YLLRRTKEET-IGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCP 447 (875)
Q Consensus 369 ~~lRR~k~~v-i~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (875)
+++||++.+. ....+|++.+.+++|+|++.|+..|+.+.+... ... .. ..... .
T Consensus 239 ~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~-----~~~-~~--~~~~~-----------------~ 293 (500)
T 1z63_A 239 FILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLF-----NNI-DS--VTGIK-----------------R 293 (500)
T ss_dssp TEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHT-----TTT-TT--CCTHH-----------------H
T ss_pred HeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHH-----HHH-Hh--hhccc-----------------c
Confidence 9999998752 233568899999999999999999998765211 000 00 00000 1
Q ss_pred ccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHH
Q 044036 448 FCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYS 527 (875)
Q Consensus 448 ~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~ 527 (875)
...++..+..|+++|+||.++.... .....++|+..|.++|..
T Consensus 294 ~~~~~~~l~~lr~~~~~p~l~~~~~-------------------------------------~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 294 KGMILSTLLKLKQIVDHPALLKGGE-------------------------------------QSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHCSC-------------------------------------CCSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHhcCcc-------------------------------------chhhcchhHHHHHHHHHH
Confidence 1245777899999999998764210 113457899999999999
Q ss_pred hhcCCCeEEEEecchhHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEE
Q 044036 528 WASKGDKILLFSYSVRMLDILEKFLIRK-GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRV 606 (875)
Q Consensus 528 ~~~~g~KVLIFs~~~~~ld~L~~~L~~~-g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~V 606 (875)
+...++|+||||+++.+++.|...|... |+.+.+++|+++..+|++++++|++++...++|+||++||+||||+.|++|
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 9899999999999999999999999985 999999999999999999999999987777899999999999999999999
Q ss_pred EEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCc
Q 044036 607 VIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK 667 (875)
Q Consensus 607 I~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~ 667 (875)
|+||++|||..+.||+||++|+||+++|.||+|++.+|+||+|++++..|..+++.++++.
T Consensus 417 i~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 417 IHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 477 (500)
T ss_dssp EESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGST
T ss_pred EEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999888764
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.2e-50 Score=503.19 Aligned_cols=441 Identities=18% Similarity=0.187 Sum_probs=325.7
Q ss_pred hhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchH
Q 044036 132 SINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVI 211 (875)
Q Consensus 132 ~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl 211 (875)
.....|+|||.+++.|++.. .+.++||||+||+|||+++++++..++.. +..+++|||||.+|+
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~--------------g~~~rvLIVvP~sLl 212 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLS--------------GAAERVLIIVPETLQ 212 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHT--------------SSCCCEEEECCTTTH
T ss_pred CCCCCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHh--------------CCCCeEEEEeCHHHH
Confidence 34578999999999999873 35688999999999999999999887643 245689999999999
Q ss_pred HHHHHHHHHhcCCcEEEEeCCChhHHHHHH--HhCCceEEEeeccccccccc---ccccccccEEEEcCCccccCcccH-
Q 044036 212 QNWEIEFSRWSTFNVSIYHGPNRDMILEKL--EACGVEVLITSFDSYRIHGS---ILSEVNWEIVIVDEAHRLKNEKSK- 285 (875)
Q Consensus 212 ~qW~~E~~k~~~~~v~v~~G~~r~~~~~~~--~~~~~~VvItTy~~l~~~~~---~l~~~~w~~VIiDEAH~ikn~~S~- 285 (875)
.||..||.+|+++++.+++|.......... ....++|+|+||+++..+.. .+...+|++||+||||+++|..+.
T Consensus 213 ~Qw~~E~~~~f~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~ 292 (968)
T 3dmq_A 213 HQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAP 292 (968)
T ss_dssp HHHHHHHHHHSCCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBC
T ss_pred HHHHHHHHHHhCCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcc
Confidence 999999999999999998876432211110 11246899999999976543 355678999999999999987644
Q ss_pred --HHHHHHhc--cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhc---------cCCCCCchh---
Q 044036 286 --LYMACLEL--KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLK---------HGQRLTAPE--- 349 (875)
Q Consensus 286 --~~kal~~l--~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~---------~g~~~~~~~--- 349 (875)
.++++..+ ++.++|+|||||++|++.|+|++++|+.|+.+++...|...+..... .+.......
T Consensus 293 s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 372 (968)
T 3dmq_A 293 SREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNM 372 (968)
T ss_dssp CHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTS
T ss_pred hHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 48888888 78889999999999999999999999999999999988876532210 000000000
Q ss_pred --HHH-----------------HHHHHHHHHHHHHH-----HHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHH
Q 044036 350 --RFI-----------------RIADERKQHLVAVL-----RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRR 405 (875)
Q Consensus 350 --~~~-----------------~~~~~~~~~L~~~L-----~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~ 405 (875)
... .....+...+..++ ..+++|+++..+ . .+|.+....+.+++++..+..|..
T Consensus 373 L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~-~~p~r~~~~~~l~~~~~~~~~~~~ 450 (968)
T 3dmq_A 373 LGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-K-GFPKRELHTIKLPLPTQYQTAIKV 450 (968)
T ss_dssp STTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-C-CCCCCCCCEEEECCCHHHHHHHHH
T ss_pred HHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-c-ccChhheEeeecCCCHHHHHHHHH
Confidence 000 00000111122222 223445555433 2 346777888899999998888865
Q ss_pred HhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHH
Q 044036 406 LLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAEL 485 (875)
Q Consensus 406 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~ 485 (875)
.... . .. ..... .. ..+.+|..+...
T Consensus 451 ~~~~-------~-~~------~~~~~------------------~~--------~~~l~pe~~~~~-------------- 476 (968)
T 3dmq_A 451 SGIM-------G-AR------KSAED------------------RA--------RDMLYPERIYQE-------------- 476 (968)
T ss_dssp HHHT-------T-CC------SSGGG------------------GT--------HHHHCSGGGTTT--------------
T ss_pred Hhhh-------h-hh------hhhHH------------------HH--------hhhcChHHHHHH--------------
Confidence 3221 0 00 00000 00 000111111100
Q ss_pred HhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH-cCCcEEEEeC
Q 044036 486 ASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR-KGYSFSRLDG 564 (875)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~-~g~~~~~ldG 564 (875)
+.. ........+.|+..|.+++.. ..+.|+||||+++.+++.|...|.. .|+++..++|
T Consensus 477 ----l~~--------------~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG 536 (968)
T 3dmq_A 477 ----FEG--------------DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHE 536 (968)
T ss_dssp ----TTS--------------SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECT
T ss_pred ----hhh--------------hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 000 001123456899999999987 4789999999999999999999994 5999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCC
Q 044036 565 STPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGS 644 (875)
Q Consensus 565 ~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gT 644 (875)
+++..+|.+++++|+++.+...+||+|+++++|||++.|++||+||++|||..+.|++||++|+||++.|.||+++..+|
T Consensus 537 ~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 537 GMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp TSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 99999999999999998744568899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 044036 645 LEELVYTRQVYKQQLSNIAV 664 (875)
Q Consensus 645 iEE~I~~rq~~K~~l~~~~~ 664 (875)
+|++|++.+..|..+....+
T Consensus 617 ~ee~i~~~~~~k~~~~~~~~ 636 (968)
T 3dmq_A 617 AQSVLVRWYHEGLDAFEHTC 636 (968)
T ss_dssp HHHHHHHHHHHTTCCSSSCC
T ss_pred HHHHHHHHHHhCCCceecCC
Confidence 99999999988877654433
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.5e-46 Score=430.84 Aligned_cols=463 Identities=16% Similarity=0.162 Sum_probs=288.0
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~ 212 (875)
...|+|||.+++.|++. + ++||+++||+|||+++++++...+. ...+++|||||. +|+.
T Consensus 7 ~~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~---------------~~~~~~liv~P~~~L~~ 66 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT---------------KYGGKVLMLAPTKPLVL 66 (494)
T ss_dssp HHCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH---------------HSCSCEEEECSSHHHHH
T ss_pred CCCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh---------------cCCCeEEEEECCHHHHH
Confidence 34899999999999876 3 9999999999999999999887652 146789999997 8999
Q ss_pred HHHHHHHHhcCC---cEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc--ccccccccEEEEcCCccccCcccHHH
Q 044036 213 NWEIEFSRWSTF---NVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS--ILSEVNWEIVIVDEAHRLKNEKSKLY 287 (875)
Q Consensus 213 qW~~E~~k~~~~---~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l~~~~w~~VIiDEAH~ikn~~S~~~ 287 (875)
||.+++.+|++. ++.+++|............ +.+|+|+||+++..... .+...+|++||+||||++++..+...
T Consensus 67 q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~ 145 (494)
T 1wp9_A 67 QHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVF 145 (494)
T ss_dssp HHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHH
T ss_pred HHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHH
Confidence 999999999864 8999999865543333322 46899999999875432 45566899999999999987543222
Q ss_pred --HHH-HhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCC---CHHHHHHHhcchhc-cCCCCCchhHHHHHHHHHHH
Q 044036 288 --MAC-LELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLG---TREHFREFYDEPLK-HGQRLTAPERFIRIADERKQ 360 (875)
Q Consensus 288 --kal-~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~---~~~~F~~~~~~~i~-~g~~~~~~~~~~~~~~~~~~ 360 (875)
..+ ......++|+|||||. |+..+++.++.++...... ....+...+..+.. .......+ ....
T Consensus 146 ~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 216 (494)
T 1wp9_A 146 IAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLP--------EIYK 216 (494)
T ss_dssp HHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCC--------HHHH
T ss_pred HHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCc--------HHHH
Confidence 122 2235788999999999 7788888888888765432 11111111111100 00000111 1234
Q ss_pred HHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCC
Q 044036 361 HLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNL 440 (875)
Q Consensus 361 ~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (875)
.+...+.+++.++.+.......+++... .++.......... +...+....... ............+...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 285 (494)
T 1wp9_A 217 EVRKLLREMLRDALKPLAETGLLESSSP-----DIPKKEVLRAGQI-----INEEMAKGNHDL-RGLLLYHAMALKLHHA 285 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCCT-----TSCHHHHHHHHHH-----HHHHHTTTCCST-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCC-----CcchhHHHHHHHH-----HHHHhhccccch-hhHHHHHHHHHHHHHH
Confidence 4666777777777775444443332221 1222211111100 011111100000 0000000000000000
Q ss_pred -CCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHH
Q 044036 441 -DGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMR 519 (875)
Q Consensus 441 -~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~ 519 (875)
..........+...+..+...+.+.... .......+........ ... . .......++|+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~------~--~~~~~~~~~k~~ 346 (494)
T 1wp9_A 286 IELLETQGLSALRAYIKKLYEEAKAGSTK------ASKEIFSDKRMKKAIS-----LLV------Q--AKEIGLDHPKMD 346 (494)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTTCCH------HHHHHHTSHHHHHHHH-----HHH------H--HHHHTCSCHHHH
T ss_pred HHHHHhhcHHHHHHHHHHHHHhhccccch------hhhhhhhhHHHHHHHH-----HHH------H--HHhcCCCChHHH
Confidence 0000000001122222233222221000 0000000000000000 000 0 000013467999
Q ss_pred HHHHHHHHhh--cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeC--------CCCHHHHHHHHHHhcCCCCceEEEE
Q 044036 520 ALEKLMYSWA--SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDG--------STPSNLRQSLVDDFNSSPSKQVFLI 589 (875)
Q Consensus 520 ~L~~LL~~~~--~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG--------~~~~~eR~~~i~~F~~~~~~~v~Li 589 (875)
.|.++|..+. ..++|+|||++++.+++.|...|...|+.+.+++| +++..+|++++++|+++... +||
T Consensus 347 ~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~--vLv 424 (494)
T 1wp9_A 347 KLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN--VLV 424 (494)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS--EEE
T ss_pred HHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce--EEE
Confidence 9999999876 57999999999999999999999999999999999 99999999999999987643 799
Q ss_pred ecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHH
Q 044036 590 STRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSN 661 (875)
Q Consensus 590 St~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~ 661 (875)
+|+++++||||++|++||+||++|||..+.||+||++|.|| +.+|+|++.+|+||+++.++..|.++++
T Consensus 425 ~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 425 ATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp ECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred ECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998 8899999999999999999999988764
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3e-41 Score=391.83 Aligned_cols=378 Identities=16% Similarity=0.240 Sum_probs=260.4
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~ 212 (875)
...|+|||.+++.+++. +.++||+++||+|||++++.++... .+++|||||. .|+.
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-------------------~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------------------STPTLIVVPTLALAE 147 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-------------------CSCEEEEESSHHHHH
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-------------------CCCEEEEECCHHHHH
Confidence 35899999999998765 4569999999999999999887754 4579999998 8999
Q ss_pred HHHHHHHHhcCCc-EEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHH
Q 044036 213 NWEIEFSRWSTFN-VSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACL 291 (875)
Q Consensus 213 qW~~E~~k~~~~~-v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~ 291 (875)
||.++|.+| +.. +.+++|.... ..+|+|+||+.+......+. .+|++||+||||++.+.... ..+.
T Consensus 148 Q~~~~~~~~-~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~ 214 (472)
T 2fwr_A 148 QWKERLGIF-GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQ 214 (472)
T ss_dssp HHHHHGGGG-CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHH
T ss_pred HHHHHHHhC-CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHH
Confidence 999999994 777 9999987653 35799999998876554332 35999999999999987543 4566
Q ss_pred hccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 044036 292 ELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRKYLL 371 (875)
Q Consensus 292 ~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~~~l 371 (875)
.+.+.++++|||||.+++-.+. .+..++.+.+.
T Consensus 215 ~~~~~~~l~lSATp~~~~~~~~-----------------------------------------------~l~~~~~~~~~ 247 (472)
T 2fwr_A 215 MSIAPFRLGLTATFEREDGRHE-----------------------------------------------ILKEVVGGKVF 247 (472)
T ss_dssp TCCCSEEEEEESCCCCTTSGGG-----------------------------------------------SHHHHTCCEEE
T ss_pred hcCCCeEEEEecCccCCCCHHH-----------------------------------------------HHHHHhCCeEe
Confidence 6788999999999986542210 02222333333
Q ss_pred hhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccch
Q 044036 372 RRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLV 451 (875)
Q Consensus 372 RR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (875)
++...++....+++.....+.+.+++.++..|+.+.... ...+..... . +.+..+..
T Consensus 248 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~-----~---------~~~~~~~~------- 304 (472)
T 2fwr_A 248 ELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVY--KQFLRARGI-----T---------LRRAEDFN------- 304 (472)
T ss_dssp ECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHH--HSCSSSCCC-----T---------TTCCSSST-------
T ss_pred ecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHH--HHHHHhcCc-----c---------ccchhhHH-------
Confidence 444444545556666677788999999998887544311 100000000 0 00000000
Q ss_pred hhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhhcC
Q 044036 452 LPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASK 531 (875)
Q Consensus 452 l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~ 531 (875)
+...... ..+............... ....+.|+..|.++|.. ..
T Consensus 305 --------~~~~~~~-~~~~~~~~~~~~~~~~~~-------------------------~~~~~~k~~~l~~~l~~--~~ 348 (472)
T 2fwr_A 305 --------KIVMASG-YDERAYEALRAWEEARRI-------------------------AFNSKNKIRKLREILER--HR 348 (472)
T ss_dssp --------TTTTTTC-CSSSSSTTTHHHHHHHHH-------------------------HHSCSHHHHHHHHHHHH--TS
T ss_pred --------HHHHHhc-cCHHHHHHHHHHHHHHHH-------------------------hhcChHHHHHHHHHHHh--CC
Confidence 0000000 000000000000000000 02245799999999988 46
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCC
Q 044036 532 GDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDP 611 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~ 611 (875)
++|+|||++++.+++.|...|. +..++|.++..+|++++++|+++... +||+|+++++|+|++.++.||+||+
T Consensus 349 ~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~--vLv~T~~~~~Gldlp~~~~Vi~~~~ 421 (472)
T 2fwr_A 349 KDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR--AIVSSQVLDEGIDVPDANVGVIMSG 421 (472)
T ss_dssp SSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS--BCBCSSCCCSSSCSCCBSEEEEECC
T ss_pred CCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC--EEEEcCchhcCcccccCcEEEEECC
Confidence 8999999999999999999883 45789999999999999999986543 7899999999999999999999999
Q ss_pred CCCchhHHHhhhcccccCCc-ceEEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 044036 612 NWNPAQDLQAQDRSFRFGQK-RHVIVFRLLSAGSLEELVYTRQVYKQQLS 660 (875)
Q Consensus 612 ~WNp~~~~QaigR~~RiGQ~-k~V~VyrLi~~gTiEE~I~~rq~~K~~l~ 660 (875)
+|||..+.|++||++|.||. +.|.||.|++.+|+||.+..++..|.+++
T Consensus 422 ~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 422 SGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 99999999999999999998 89999999999999999999998887764
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-40 Score=355.85 Aligned_cols=235 Identities=31% Similarity=0.476 Sum_probs=177.4
Q ss_pred HHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCcc
Q 044036 370 LLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFC 449 (875)
Q Consensus 370 ~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (875)
-+||+|.++..+ +|++.+.+++|+||+.|+++|+.+++..... +.. ..... ...
T Consensus 13 ~~rr~k~~v~~~-LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~--~~~------~~~~~-----------------~~~ 66 (271)
T 1z5z_A 13 GLVPRGSHMASD-LPDKIETNVYCNLTPEQAAMYKAEVENLFNN--IDS------VTGIK-----------------RKG 66 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHH--TTT------CCHHH-----------------HHH
T ss_pred cccccHHHHHhh-CCCCEEEEEEeCCCHHHHHHHHHHHHHHHHH--HHh------ccccc-----------------hHH
Confidence 479999988876 5789999999999999999999987632111 100 00000 012
Q ss_pred chhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhh
Q 044036 450 LVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWA 529 (875)
Q Consensus 450 ~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~ 529 (875)
.++..++.|+++|+||.++.... .....++|+..|.++|..+.
T Consensus 67 ~~l~~l~~Lrq~~~hP~l~~~~~-------------------------------------~~~~~s~K~~~L~~ll~~~~ 109 (271)
T 1z5z_A 67 MILSTLLKLKQIVDHPALLKGGE-------------------------------------QSVRRSGKMIRTMEIIEEAL 109 (271)
T ss_dssp HHHHHHHHHHHHTTCTHHHHCSC-------------------------------------CCSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHhcCCc-------------------------------------cccccCHHHHHHHHHHHHHH
Confidence 46788999999999999874110 01345789999999999998
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEE
Q 044036 530 SKGDKILLFSYSVRMLDILEKFLIRK-GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI 608 (875)
Q Consensus 530 ~~g~KVLIFs~~~~~ld~L~~~L~~~-g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~ 608 (875)
..++|+||||+++.+++.|+.+|... |+.+.+++|+++..+|++++++|++++...|||+||++||+||||+.|++||+
T Consensus 110 ~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 110 DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH 189 (271)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE
T ss_pred hCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE
Confidence 89999999999999999999999985 99999999999999999999999998777899999999999999999999999
Q ss_pred cCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcCc
Q 044036 609 FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVSGK 667 (875)
Q Consensus 609 ~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~g~ 667 (875)
||+||||..+.||+||+||+||+++|.||+|++.+|+||+|++++..|..+++.+++++
T Consensus 190 ~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 190 FDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 248 (271)
T ss_dssp CSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGT
T ss_pred ECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999764
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7e-38 Score=370.26 Aligned_cols=459 Identities=15% Similarity=0.179 Sum_probs=233.3
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..|+|||.+++.+++. +.++|++++||+|||++++..+...+.... ....+++|||||. .|+.|
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----------~~~~~~~lil~P~~~L~~q 70 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMP-----------AGRKAKVVFLATKVPVYEQ 70 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----------SSCCCCEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCc-----------ccCCCeEEEEeCCHHHHHH
Confidence 4799999999999875 678999999999999999888877654321 1236789999997 89999
Q ss_pred HHHHHHHhc---CCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc--cc-ccccccEEEEcCCccccCcccHHH
Q 044036 214 WEIEFSRWS---TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS--IL-SEVNWEIVIVDEAHRLKNEKSKLY 287 (875)
Q Consensus 214 W~~E~~k~~---~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l-~~~~w~~VIiDEAH~ikn~~S~~~ 287 (875)
|.+++.+|+ ++++..++|.............+++|+|+|++.+..... .+ ....|++||+||||++.+... ..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~ 149 (556)
T 4a2p_A 71 QKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YN 149 (556)
T ss_dssp HHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HH
T ss_pred HHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HH
Confidence 999999986 478888988763322111112346899999999875432 23 345789999999999988764 22
Q ss_pred HHHHhc---------cccceEEeecCCCCCCH-------HHHHHHHhhhCCCC----CCCHHHHHHHhcchhccCCCCC-
Q 044036 288 MACLEL---------KTRNRIGLTGTIMQNKI-------MELYNLFDWVAPGS----LGTREHFREFYDEPLKHGQRLT- 346 (875)
Q Consensus 288 kal~~l---------~~~~rllLTGTPiqN~~-------~El~~Ll~~l~p~~----~~~~~~F~~~~~~~i~~g~~~~- 346 (875)
..+..+ ...++++|||||.+++. ..+..+...++... ......+..++..|........
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (556)
T 4a2p_A 150 VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR 229 (556)
T ss_dssp HHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC
T ss_pred HHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC
Confidence 222222 23678999999988764 33444445555432 2244556666655543221111
Q ss_pred -chhHHHHHHHHHHHHHHHHHHH----------------------HHHhhchhHHhhccCCCceeEEEEecCCHHHHHHH
Q 044036 347 -APERFIRIADERKQHLVAVLRK----------------------YLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAY 403 (875)
Q Consensus 347 -~~~~~~~~~~~~~~~L~~~L~~----------------------~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y 403 (875)
...............+...+.. ++....+.... ...+....+...|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 298 (556)
T 4a2p_A 230 RIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRL-----------LQLEDKEEESRIC 298 (556)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHH-----------C---CHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHh-----------hcccccchhHHHH
Confidence 1111111112222222222221 11111111000 0111222222233
Q ss_pred HHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhH
Q 044036 404 RRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDA 483 (875)
Q Consensus 404 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~ 483 (875)
..+............ ....... .........+...+....... .+..+ .
T Consensus 299 ~~~~~~~~~l~~~~~-----------~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~---~~~~~-----~ 347 (556)
T 4a2p_A 299 RALFICTEHLRKYND-----------ALIISED------------ARIIDALSYLTEFFTNVKNGP---YTELE-----Q 347 (556)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHH------------SCHHHHHHHHHHHHHHHHHSC---CCHHH-----H
T ss_pred HHHHHHHHHHHHHHH-----------HHHHhhh------------hhHHHHHHHHHHHHHHHHhcC---CCHHH-----H
Confidence 222211000000000 0000000 000111111222111110000 00000 0
Q ss_pred HHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhh--cCCCeEEEEecchhHHHHHHHHHHHc------
Q 044036 484 ELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWA--SKGDKILLFSYSVRMLDILEKFLIRK------ 555 (875)
Q Consensus 484 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~--~~g~KVLIFs~~~~~ld~L~~~L~~~------ 555 (875)
..... +......... ........++|+..|.++|..+. ..+.|+|||++++.+++.|...|...
T Consensus 348 ~~~~~-~~~~~~~l~~-------~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 419 (556)
T 4a2p_A 348 HLTAK-FQEKEPELIA-------LSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI 419 (556)
T ss_dssp HHHHH-HHTTHHHHHH-------HHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSC
T ss_pred HHHHH-HhhHHHHhhh-------hccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCccee
Confidence 00000 0000000000 00000124679999999998876 67899999999999999999999875
Q ss_pred ------CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccC
Q 044036 556 ------GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFG 629 (875)
Q Consensus 556 ------g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiG 629 (875)
|..+..++|+++..+|.+++++|++++... +||+|+++++|||++++++||+||++|||..+.||+|| +
T Consensus 420 ~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-g--- 494 (556)
T 4a2p_A 420 KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G--- 494 (556)
T ss_dssp CEEC------------------------------CC-EEEEEC-----------CEEEEETCCSCHHHHHHC--------
T ss_pred eeeEEEccCCcccccccCHHHHHHHHHHhcccCceE-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-C---
Confidence 566667778899999999999999833333 78999999999999999999999999999999999999 4
Q ss_pred CcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044036 630 QKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS 665 (875)
Q Consensus 630 Q~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~ 665 (875)
+.+++.+|.|++.+++|++ +..+..|..+++.++.
T Consensus 495 R~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 495 RAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp ----CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHH
Confidence 4588899999999999999 7778888888776654
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-37 Score=383.74 Aligned_cols=465 Identities=15% Similarity=0.175 Sum_probs=240.2
Q ss_pred CCchh--hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEc
Q 044036 129 VPASI--NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIIC 206 (875)
Q Consensus 129 vP~~i--~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~ 206 (875)
.|..+ ...|+|||.+++.+++. +.++|++++||+|||++++..+...+.... ....+++||||
T Consensus 239 ~~~~~~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-----------~~~~~~~Lvl~ 303 (797)
T 4a2q_A 239 KPPPVYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMP-----------AGRKAKVVFLA 303 (797)
T ss_dssp ---------CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----------SSCCCCEEEEC
T ss_pred CchhhcCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----------ccCCCeEEEEe
Confidence 44444 56899999999998865 688999999999999999888877654321 12367899999
Q ss_pred Cc-chHHHHHHHHHHhc---CCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc--cc-ccccccEEEEcCCccc
Q 044036 207 PS-SVIQNWEIEFSRWS---TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS--IL-SEVNWEIVIVDEAHRL 279 (875)
Q Consensus 207 P~-sLl~qW~~E~~k~~---~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l-~~~~w~~VIiDEAH~i 279 (875)
|. .|+.||.+++.+|+ ++++..++|.............+++|+|+|++.+..... .+ ...+|++|||||||++
T Consensus 304 Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~ 383 (797)
T 4a2q_A 304 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNT 383 (797)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGC
T ss_pred CCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECcccc
Confidence 95 69999999999997 488999999864332222223467999999999875432 23 3446899999999999
Q ss_pred cCcccHHHHHHHhc---------cccceEEeecCCCCCCHHHHH-------HHHhhhCCCC----CCCHHHHHHHhcchh
Q 044036 280 KNEKSKLYMACLEL---------KTRNRIGLTGTIMQNKIMELY-------NLFDWVAPGS----LGTREHFREFYDEPL 339 (875)
Q Consensus 280 kn~~S~~~kal~~l---------~~~~rllLTGTPiqN~~~El~-------~Ll~~l~p~~----~~~~~~F~~~~~~~i 339 (875)
.+... ....+..+ ...++++|||||.+++..++. .+...++... ......+..++..|.
T Consensus 384 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~ 462 (797)
T 4a2q_A 384 TGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPE 462 (797)
T ss_dssp STTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCC
T ss_pred CCCcc-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCc
Confidence 88654 22222222 225789999999886543322 2333333322 233456666666554
Q ss_pred ccCCCCC--chhHHHHHHHHHHHHHHHHHHHHHH----------------------hhchhHHhhccCCCceeEEEEecC
Q 044036 340 KHGQRLT--APERFIRIADERKQHLVAVLRKYLL----------------------RRTKEETIGHLMMGKEDNVVFCTM 395 (875)
Q Consensus 340 ~~g~~~~--~~~~~~~~~~~~~~~L~~~L~~~~l----------------------RR~k~~vi~~~lp~k~e~vv~~~l 395 (875)
....... ...............+..++..++- ...+...... + +.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~----------~~ 531 (797)
T 4a2q_A 463 IDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQ-L----------ED 531 (797)
T ss_dssp CEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCC-C----------SS
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhc-c----------cc
Confidence 3221111 1122222222223333333333221 1000000000 0 11
Q ss_pred CHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCC
Q 044036 396 SDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDE 475 (875)
Q Consensus 396 t~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~ 475 (875)
...+...|..+........-... ....... .........+...+.+..... .+.
T Consensus 532 ~~~~~~~~~~l~~~~~~l~~~~~-----------~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~---~~~ 585 (797)
T 4a2q_A 532 KEEESRICRALFICTEHLRKYND-----------ALIISED------------ARIIDALSYLTEFFTNVKNGP---YTE 585 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH------------SCHHHHHHHHHHHHHHHHHTT---CCH
T ss_pred cchhhHHHHHHHHHHHHHHHHHH-----------HHhhhcc------------ccHHHHHHHHHHHHHHHhccC---ccH
Confidence 11111222211110000000000 0000000 001111222222222111100 000
Q ss_pred chhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhh--cCCCeEEEEecchhHHHHHHHHHH
Q 044036 476 PDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWA--SKGDKILLFSYSVRMLDILEKFLI 553 (875)
Q Consensus 476 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~--~~g~KVLIFs~~~~~ld~L~~~L~ 553 (875)
.+ ..... .+........ .........++|+..|.++|..+. ..+.|+||||+++.+++.|..+|.
T Consensus 586 ~~-----~~l~~-~~~~~~~~l~-------~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~ 652 (797)
T 4a2q_A 586 LE-----QHLTA-KFQEKEPELI-------ALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCME 652 (797)
T ss_dssp HH-----HHHHH-HHHTTHHHHH-------HHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHH
T ss_pred HH-----HHHHH-HHHHHHHHHH-------HhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHH
Confidence 00 00000 0000000000 000001124689999999998754 678999999999999999999998
Q ss_pred Hc------------CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHh
Q 044036 554 RK------------GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQA 621 (875)
Q Consensus 554 ~~------------g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~Qa 621 (875)
.. |..+..++|+++..+|.+++++|++++... +||+|+++++|||+++|++||+||++|||..+.||
T Consensus 653 ~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr 731 (797)
T 4a2q_A 653 ENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQV 731 (797)
T ss_dssp TCSTTCSCCCEEC----------------------------CCS-EEEEECC-------CCCSEEEEESCCSCHHHHHTC
T ss_pred hCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHh
Confidence 73 667778889999999999999999833333 88999999999999999999999999999999999
Q ss_pred hhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044036 622 QDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS 665 (875)
Q Consensus 622 igR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~ 665 (875)
+|| +| .+++.||.|++.++++|+ +..+..|..+++.++.
T Consensus 732 ~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~ 770 (797)
T 4a2q_A 732 RGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 770 (797)
T ss_dssp -----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred cCC-CC---CCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHH
Confidence 999 55 588999999999999999 7788888888776654
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=9.2e-37 Score=360.25 Aligned_cols=455 Identities=17% Similarity=0.206 Sum_probs=247.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.... ....+++|||||. .|+.||
T Consensus 4 ~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----------~~~~~~~lil~P~~~L~~q~ 68 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFP-----------CGQKGKVVFFANQIPVYEQQ 68 (555)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----------SSCCCCEEEECSSHHHHHHH
T ss_pred CCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----------cCCCCEEEEEeCCHHHHHHH
Confidence 689999999999875 788999999999999998888877654321 1236789999997 899999
Q ss_pred HHHHHHhc---CCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc--cc-ccccccEEEEcCCccccCcccHHHH
Q 044036 215 EIEFSRWS---TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS--IL-SEVNWEIVIVDEAHRLKNEKSKLYM 288 (875)
Q Consensus 215 ~~E~~k~~---~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l-~~~~w~~VIiDEAH~ikn~~S~~~k 288 (875)
.+++.+++ ++++..++|.............+++|+|+|++.+..... .+ ....|++||+||||++.+..+....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~ 148 (555)
T 3tbk_A 69 ATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQI 148 (555)
T ss_dssp HHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHH
T ss_pred HHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHH
Confidence 99999996 478999999864332211122346899999999875432 23 3456899999999999887642222
Q ss_pred HHHhc---------cccceEEeecCCCCCC-------HHHHHHHHhhhCCCCC----CCHHHHHHHhcchhccCCCCC--
Q 044036 289 ACLEL---------KTRNRIGLTGTIMQNK-------IMELYNLFDWVAPGSL----GTREHFREFYDEPLKHGQRLT-- 346 (875)
Q Consensus 289 al~~l---------~~~~rllLTGTPiqN~-------~~El~~Ll~~l~p~~~----~~~~~F~~~~~~~i~~g~~~~-- 346 (875)
....+ ...++++|||||.+++ ...+..+..+++...+ .....+..++..|........
T Consensus 149 ~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (555)
T 3tbk_A 149 MFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR 228 (555)
T ss_dssp HHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC
T ss_pred HHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc
Confidence 21222 2247899999999887 3444455556654322 233444444444332211111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH-----------------------HhhchhHHhhccCCCce-eEEEEecC--CHHHH
Q 044036 347 APERFIRIADERKQHLVAVLRKYL-----------------------LRRTKEETIGHLMMGKE-DNVVFCTM--SDLQK 400 (875)
Q Consensus 347 ~~~~~~~~~~~~~~~L~~~L~~~~-----------------------lRR~k~~vi~~~lp~k~-e~vv~~~l--t~~q~ 400 (875)
...............+..++..++ ....+...... .+... ...++..+ ...+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 307 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQ-MADKEEESRVCKALFLYTSHL 307 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCC-CSSHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhh-ccchhhHHHHHHHHHHHHHHH
Confidence 111111111222222222222111 00000000000 00000 00000000 00000
Q ss_pred HHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhh
Q 044036 401 RAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQR 480 (875)
Q Consensus 401 ~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~ 480 (875)
..|...+........ ......+...+...... ......
T Consensus 308 ~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~---~~~~~~--- 345 (555)
T 3tbk_A 308 RKYNDALIISEDAQM------------------------------------TDALNYLKAFFHDVREA---AFDETE--- 345 (555)
T ss_dssp HHHHHHHHHHHHSCH------------------------------------HHHHHHHHHHHHHHCC--------HH---
T ss_pred HHHHHHHhhhhhhhH------------------------------------HHHHHHHHHHHHHHhhc---ccchHH---
Confidence 112111111000000 00000000000000000 000000
Q ss_pred hhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhhc--CCCeEEEEecchhHHHHHHHHHHHcC--
Q 044036 481 KDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWAS--KGDKILLFSYSVRMLDILEKFLIRKG-- 556 (875)
Q Consensus 481 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~--~g~KVLIFs~~~~~ld~L~~~L~~~g-- 556 (875)
......... ....... ........++|+..|.++|..+.. .+.|+||||+++.+++.|...|...|
T Consensus 346 --~~~~~~~~~-~~~~~~~-------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~ 415 (555)
T 3tbk_A 346 --RELTRRFEE-KLEELEK-------VSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPAL 415 (555)
T ss_dssp --HHHHHHHHT-THHHHHH-------HHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGG
T ss_pred --HHHHHHHhh-hhhhhhh-------hccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCc
Confidence 000000000 0000000 000001235799999999998753 45999999999999999999999863
Q ss_pred ----------CcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhccc
Q 044036 557 ----------YSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSF 626 (875)
Q Consensus 557 ----------~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~ 626 (875)
..+..++|++++.+|.+++++|++++... +||+|+++++|||++++++||+||++|||..+.||+||
T Consensus 416 ~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~-vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-- 492 (555)
T 3tbk_A 416 SFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN-ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-- 492 (555)
T ss_dssp TTCCEEECCC--------------------------CCS-EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC--
T ss_pred CceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee-EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc--
Confidence 45556667999999999999999833333 68899999999999999999999999999999999999
Q ss_pred ccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHh
Q 044036 627 RFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664 (875)
Q Consensus 627 RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~ 664 (875)
|+.+++.+|.|++.++.++. +..+..|..+++..+
T Consensus 493 --gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~ 527 (555)
T 3tbk_A 493 --GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESI 527 (555)
T ss_dssp --CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHH
T ss_pred --CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHH
Confidence 56689999999999999998 566677777766655
No 11
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.9e-37 Score=384.57 Aligned_cols=461 Identities=16% Similarity=0.190 Sum_probs=237.2
Q ss_pred ccCCchh--hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEE
Q 044036 127 IQVPASI--NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLI 204 (875)
Q Consensus 127 ~~vP~~i--~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LI 204 (875)
+..|..+ ...|+|||.+++.+++. +.++|++++||+|||++++..+...+.... ....+++||
T Consensus 237 ~~~~~~l~~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-----------~~~~~~vLv 301 (936)
T 4a2w_A 237 IGKPPPVYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMP-----------AGRKAKVVF 301 (936)
T ss_dssp -----------CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCC-----------SSCCCCEEE
T ss_pred hcCcccccCCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhcc-----------ccCCCeEEE
Confidence 3344444 56899999999999865 788999999999999998888876654321 123678999
Q ss_pred EcCc-chHHHHHHHHHHhc---CCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc--cc-ccccccEEEEcCCc
Q 044036 205 ICPS-SVIQNWEIEFSRWS---TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS--IL-SEVNWEIVIVDEAH 277 (875)
Q Consensus 205 V~P~-sLl~qW~~E~~k~~---~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l-~~~~w~~VIiDEAH 277 (875)
|||. .|+.||.+++.+|+ ++++.+++|.............+++|+|+||+++..... .+ ....|++||+||||
T Consensus 302 l~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH 381 (936)
T 4a2w_A 302 LATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH 381 (936)
T ss_dssp ECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGG
T ss_pred EeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECcc
Confidence 9995 59999999999996 478999999764322111112246899999999875432 22 33468999999999
Q ss_pred cccCcccHHHHHHHhc---------cccceEEeecCCCCCCHHHHH-------HHHhhhCCCC----CCCHHHHHHHhcc
Q 044036 278 RLKNEKSKLYMACLEL---------KTRNRIGLTGTIMQNKIMELY-------NLFDWVAPGS----LGTREHFREFYDE 337 (875)
Q Consensus 278 ~ikn~~S~~~kal~~l---------~~~~rllLTGTPiqN~~~El~-------~Ll~~l~p~~----~~~~~~F~~~~~~ 337 (875)
++.+..+ ....+..+ ...++++|||||.+++..+++ .+...++... ......+..++..
T Consensus 382 ~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~ 460 (936)
T 4a2w_A 382 NTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNK 460 (936)
T ss_dssp GCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCC
T ss_pred ccCCCcc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccC
Confidence 9998765 33333222 226789999999887643333 2333333322 2234556666655
Q ss_pred hhccCCCCC--chhHHHHHHHHHHHHHHHHHHHHHH----------------------hhchhHHhhccCCCceeEEEEe
Q 044036 338 PLKHGQRLT--APERFIRIADERKQHLVAVLRKYLL----------------------RRTKEETIGHLMMGKEDNVVFC 393 (875)
Q Consensus 338 ~i~~g~~~~--~~~~~~~~~~~~~~~L~~~L~~~~l----------------------RR~k~~vi~~~lp~k~e~vv~~ 393 (875)
|........ ...............+..++..++. ...+...... +
T Consensus 461 p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~-l---------- 529 (936)
T 4a2w_A 461 PEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQ-L---------- 529 (936)
T ss_dssp CCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCC-C----------
T ss_pred CcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhc-c----------
Confidence 543221111 1111111112222223333222111 1111100000 0
Q ss_pred cCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCC
Q 044036 394 TMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPR 473 (875)
Q Consensus 394 ~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~ 473 (875)
+........|..+..........+. ....... .........+...+....... .
T Consensus 530 ~~~~~~~~~~~~l~~~~~~l~~~~~-----------al~i~~~------------~~~~~~~~~l~~~~~~~~~~~---~ 583 (936)
T 4a2w_A 530 EDKEEESRICRALFICTEHLRKYND-----------ALIISED------------ARIIDALSYLTEFFTNVKNGP---Y 583 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH------------SCHHHHHHHHHHHHHHHHHTT---C
T ss_pred cccchhhHHHHHHHHHHHHHHHHHH-----------HHhhhcc------------hhHHHHHHHHHHHHHHHhhcc---C
Confidence 1111111222111110000000000 0000000 000111112222211110000 0
Q ss_pred CCchhhhh------hHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhh--cCCCeEEEEecchhHH
Q 044036 474 DEPDKQRK------DAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWA--SKGDKILLFSYSVRML 545 (875)
Q Consensus 474 ~~~~~~~~------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~--~~g~KVLIFs~~~~~l 545 (875)
+..+.... ........ ......++|+..|.++|..+. ..++|+|||++++.++
T Consensus 584 ~~~e~~l~~~~~~~~~~l~~~~-------------------~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~a 644 (936)
T 4a2w_A 584 TELEQHLTAKFQEKEPELIALS-------------------KDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-------------------TSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhh-------------------hccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHH
Confidence 00000000 00000000 000123689999999999865 5689999999999999
Q ss_pred HHHHHHHHHc------------CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCC
Q 044036 546 DILEKFLIRK------------GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNW 613 (875)
Q Consensus 546 d~L~~~L~~~------------g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~W 613 (875)
+.|..+|... |..+..++|+++..+|.+++++|++++... +||+|+++++||||++|+.||+||++|
T Consensus 645 e~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~-VLVaT~~~~eGIDlp~v~~VI~yD~p~ 723 (936)
T 4a2w_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSG 723 (936)
T ss_dssp HHHHHHHHHCSTTSSCCCEEC----------------------------CCS-EEEEECC------CCCCSEEEEESCCS
T ss_pred HHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee-EEEEeCchhcCCcchhCCEEEEeCCCC
Confidence 9999999986 666677788899999999999999833333 789999999999999999999999999
Q ss_pred CchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044036 614 NPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAVS 665 (875)
Q Consensus 614 Np~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~~ 665 (875)
||..+.||+|| |+.+++.||.|++.+|+|++.+ .+..|..++..++.
T Consensus 724 s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 724 NVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp CSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999 4568888999999999999866 66777777666653
No 12
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7.8e-34 Score=345.32 Aligned_cols=435 Identities=16% Similarity=0.194 Sum_probs=225.9
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..|+|||.+++.+++. +.++|++++||+|||++++.++...+...+ ....+++|||+|. +|+.|
T Consensus 12 ~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-----------~~~~~~~lvl~Pt~~L~~Q 76 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFP-----------QGQKGKVVFFANQIPVYEQ 76 (696)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSC-----------TTCCCCEEEECSSHHHHHH
T ss_pred CCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCc-----------cCCCCeEEEEECCHHHHHH
Confidence 4799999999999876 789999999999999999888876543221 1234789999996 89999
Q ss_pred HHHHHHHhc---CCcEEEEeCCChh-HHHHHHHhCCceEEEeeccccccccc--cc-ccccccEEEEcCCccccCcccHH
Q 044036 214 WEIEFSRWS---TFNVSIYHGPNRD-MILEKLEACGVEVLITSFDSYRIHGS--IL-SEVNWEIVIVDEAHRLKNEKSKL 286 (875)
Q Consensus 214 W~~E~~k~~---~~~v~v~~G~~r~-~~~~~~~~~~~~VvItTy~~l~~~~~--~l-~~~~w~~VIiDEAH~ikn~~S~~ 286 (875)
|.+++.+++ ++++..++|.... .....+. .+.+|+|+|++.+..... .+ ...+|++||+||||++.+..+..
T Consensus 77 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~ 155 (696)
T 2ykg_A 77 NKSVFSKYFERHGYRVTGISGATAENVPVEQIV-ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYN 155 (696)
T ss_dssp HHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH-HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHH
T ss_pred HHHHHHHHhccCCceEEEEeCCccccccHHHhc-cCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHH
Confidence 999999998 4788889987532 2222222 357999999999875432 23 34578999999999998876433
Q ss_pred HHHHHhc---------cccceEEeecCCCCCC-------HHHHHHHHhhhCCCCCC----CHHHHHHHhcchhcc----C
Q 044036 287 YMACLEL---------KTRNRIGLTGTIMQNK-------IMELYNLFDWVAPGSLG----TREHFREFYDEPLKH----G 342 (875)
Q Consensus 287 ~kal~~l---------~~~~rllLTGTPiqN~-------~~El~~Ll~~l~p~~~~----~~~~F~~~~~~~i~~----g 342 (875)
......+ ...++|+|||||..++ ..+++.++.+++...+. .......+...|... .
T Consensus 156 ~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~ 235 (696)
T 2ykg_A 156 MIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 235 (696)
T ss_dssp HHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECC
T ss_pred HHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecC
Confidence 2221111 3478899999998543 45666666666554332 223334444333211 0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHH-----------------------HHHhhchhHHhhccCCCceeEEEEecCCHHH
Q 044036 343 QRLTAPERFIRIADERKQHLVAVLRK-----------------------YLLRRTKEETIGHLMMGKEDNVVFCTMSDLQ 399 (875)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~L~~~L~~-----------------------~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q 399 (875)
..... .+..........+..+... ++.++.+...... +|.+.+ +
T Consensus 236 ~~~~~--~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~ 302 (696)
T 2ykg_A 236 SRISD--KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ-MPDKDE----------E 302 (696)
T ss_dssp CCSCC--HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC-------CC----------H
T ss_pred cccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhh-cccchh----------h
Confidence 11111 1111111001111111111 1111111100000 000000 0
Q ss_pred HHHHHHHhcc------hhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCC
Q 044036 400 KRAYRRLLQL------PEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPR 473 (875)
Q Consensus 400 ~~~Y~~~l~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~ 473 (875)
...+..+... ......+.... .....+..+.+........ .
T Consensus 303 ~~~~~~l~~~~~~l~~~~~~~~i~~~~-----------------------------~~~~~~~~l~~~~~~~~~~---~- 349 (696)
T 2ykg_A 303 SRICKALFLYTSHLRKYNDALIISEHA-----------------------------RMKDALDYLKDFFSNVRAA---G- 349 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------------------CHHHHHHHHHHHHHHHHTT---C-
T ss_pred hHHHHHHHHHHHHHHHHhHHHhccchh-----------------------------hHHHHHHHHHHHHHHHhhc---c-
Confidence 0111100000 00000000000 0001111111111110000 0
Q ss_pred CCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhh--cCCCeEEEEecchhHHHHHHHH
Q 044036 474 DEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWA--SKGDKILLFSYSVRMLDILEKF 551 (875)
Q Consensus 474 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~--~~g~KVLIFs~~~~~ld~L~~~ 551 (875)
.....+.... .+........ .........+.|+..|.++|.... ..+.++|||++++.+++.|...
T Consensus 350 ~~~~~~~~~~-----~~~~~~~~l~-------~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~ 417 (696)
T 2ykg_A 350 FDEIEQDLTQ-----RFEEKLQELE-------SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 417 (696)
T ss_dssp CCHHHHHHHH-----HHHTTHHHHH-------HHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHH
T ss_pred cchHHHHHHH-----HHHHHHHHHH-------HHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHH
Confidence 0000000000 0000000000 000000123469999999998864 3678999999999999999999
Q ss_pred HHHcC----CcEEEEeC--------CCCHHHHHHHHHHhcC-CCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchhH
Q 044036 552 LIRKG----YSFSRLDG--------STPSNLRQSLVDDFNS-SPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQD 618 (875)
Q Consensus 552 L~~~g----~~~~~ldG--------~~~~~eR~~~i~~F~~-~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~~ 618 (875)
|...| +++..++| ++++.+|.+++++|++ +... +||+|+++++|||+++++.||+||++||+..+
T Consensus 418 L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~--vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~ 495 (696)
T 2ykg_A 418 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIKM 495 (696)
T ss_dssp HHHCTTCCSCCEEC-----------------------------CCS--CSEEEESSCCC---CCCSEEEEESCC--CCCC
T ss_pred HHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc--EEEEechhhcCCcCccCCEEEEeCCCCCHHHH
Confidence 99988 89999955 9999999999999997 5433 68999999999999999999999999999999
Q ss_pred HHhhhcccccCCcceEEEEEEeeCCCHHHHH
Q 044036 619 LQAQDRSFRFGQKRHVIVFRLLSAGSLEELV 649 (875)
Q Consensus 619 ~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I 649 (875)
.||+|| +|. ++..+|.|++.+++++.-
T Consensus 496 ~Qr~GR-GR~---~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 496 IQTRGR-GRA---RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp -------------CCCEEEEEESCHHHHHHH
T ss_pred HHhhcc-CcC---CCceEEEEecCCCHHHHH
Confidence 999999 884 677889999999887653
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.1e-34 Score=345.87 Aligned_cols=450 Identities=15% Similarity=0.152 Sum_probs=251.7
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..|+|||.+++.+++. +.++|++++||+|||++++.++..++.... .....+++|||||. .|+.|
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----------~~~~~~~vlvl~P~~~L~~Q 71 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKK----------KASEPGKVIVLVNKVLLVEQ 71 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHH----------HHTCCCCBCCEESCSHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcc----------ccCCCCeEEEEECCHHHHHH
Confidence 4799999999999876 788999999999999999888876653210 01234789999996 58999
Q ss_pred H-HHHHHHhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--------cccccccccEEEEcCCccccCc
Q 044036 214 W-EIEFSRWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--------SILSEVNWEIVIVDEAHRLKNE 282 (875)
Q Consensus 214 W-~~E~~k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--------~~l~~~~w~~VIiDEAH~ikn~ 282 (875)
| .++|.+|++ +.+..++|...............+|+|+|++.+.... ..+....|++|||||||++.+.
T Consensus 72 ~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~ 151 (699)
T 4gl2_A 72 LFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 151 (699)
T ss_dssp HHHHTHHHHHTTTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTT
T ss_pred HHHHHHHHHcCcCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCcc
Confidence 9 999999988 7999999975432211122246799999999987533 2344568999999999998553
Q ss_pred cc---HHHHHHHh-c-------------cccceEEeecCCCCCC-------HHHHHHHHhhhCCCCC----CCHHHHHHH
Q 044036 283 KS---KLYMACLE-L-------------KTRNRIGLTGTIMQNK-------IMELYNLFDWVAPGSL----GTREHFREF 334 (875)
Q Consensus 283 ~S---~~~kal~~-l-------------~~~~rllLTGTPiqN~-------~~El~~Ll~~l~p~~~----~~~~~F~~~ 334 (875)
.. .....+.. + ...++++|||||..++ ..++..++..+++..+ .....+...
T Consensus 152 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~ 231 (699)
T 4gl2_A 152 AVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQ 231 (699)
T ss_dssp BSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHH
T ss_pred chHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhh
Confidence 21 11111211 1 4467899999999863 3455666667776332 223455555
Q ss_pred hcchhccCCCCCc--hhHHHHHHHHHHHHHHHHHHHHH-----------------HhhchhHHhhccCCCceeEEEEecC
Q 044036 335 YDEPLKHGQRLTA--PERFIRIADERKQHLVAVLRKYL-----------------LRRTKEETIGHLMMGKEDNVVFCTM 395 (875)
Q Consensus 335 ~~~~i~~g~~~~~--~~~~~~~~~~~~~~L~~~L~~~~-----------------lRR~k~~vi~~~lp~k~e~vv~~~l 395 (875)
+..|...-..... .... ......+...+..++ ....+........ . +..
T Consensus 232 ~~~p~~~~~~~~~~~~~~~----~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~-------~~~ 299 (699)
T 4gl2_A 232 IQEPCKKFAIADATREDPF----KEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNR-K-------ERV 299 (699)
T ss_dssp SCCCEEEEEEEC-----CH----HHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCT-T-------THH
T ss_pred cCCCceEEEEcccccCChH----HHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhh-h-------hHH
Confidence 5544321111100 0000 011111211111111 0000000000000 0 000
Q ss_pred CHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhh----c-----cCCCCCCCCCccchhhHHHHHHHHhcccc
Q 044036 396 SDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKR----L-----DNLDGCDSCPFCLVLPCLVKLQQISNHLE 466 (875)
Q Consensus 396 t~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~ 466 (875)
...+...|...+..... . ........+.. . ....+....+ ..+...-..+......
T Consensus 300 ~~~~l~~~~~~~~~~~~-------~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-- 364 (699)
T 4gl2_A 300 CAEHLRKYNEALQINDT-------I-----RMIDAYTHLETFYNEEKDKKFAVIEDDLKKP-LKLDETDRFLMTLFFE-- 364 (699)
T ss_dssp HHHHHHHHHHHHHHHHH-------S-----CHHHHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHH-------H-----HHHHHHHHHHHHHHHHHhhhccccccccccc-cccchhHHHHHHHHHH--
Confidence 00111111110000000 0 00000000000 0 0000000000 0000000000000000
Q ss_pred ccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhhc--C-CCeEEEEecchh
Q 044036 467 LIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWAS--K-GDKILLFSYSVR 543 (875)
Q Consensus 467 l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~--~-g~KVLIFs~~~~ 543 (875)
...+....... ....+.|+..|.++|..... . +.++|||++++.
T Consensus 365 --------------~~~~l~~~~~~-------------------~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~ 411 (699)
T 4gl2_A 365 --------------NNKMLKRLAEN-------------------PEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQ 411 (699)
T ss_dssp --------------HHHHHHHHHTC-------------------CC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHH
T ss_pred --------------HHHHHHHHhhc-------------------CCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHH
Confidence 00000000000 01123577777888776443 2 789999999999
Q ss_pred HHHHHHHHHHHc------CCcEEEEeCC--------CCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEc
Q 044036 544 MLDILEKFLIRK------GYSFSRLDGS--------TPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIF 609 (875)
Q Consensus 544 ~ld~L~~~L~~~------g~~~~~ldG~--------~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~ 609 (875)
+++.|..+|... |+++..++|+ ++..+|.+++++|+++... +||+|+++++|||+++++.||+|
T Consensus 412 ~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~--VLVaT~~~~~GIDip~v~~VI~~ 489 (699)
T 4gl2_A 412 SAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN--LLIATTVAEEGLDIKECNIVIRY 489 (699)
T ss_dssp HHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---C--CSEEECSCCTTSCCCSCCCCEEE
T ss_pred HHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCc--EEEEccccccCCccccCCEEEEe
Confidence 999999999987 9999999999 9999999999999986544 78999999999999999999999
Q ss_pred CCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHh
Q 044036 610 DPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQQLSNIAV 664 (875)
Q Consensus 610 D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~~l~~~~~ 664 (875)
|++|||..+.|++||++|-| ..++.+...++.+...+.....+..++...+
T Consensus 490 d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (699)
T 4gl2_A 490 GLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFREKMMYKAI 540 (699)
T ss_dssp SCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986655 4455566677766665555556666655544
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1e-33 Score=331.63 Aligned_cols=347 Identities=12% Similarity=0.100 Sum_probs=247.2
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~ 212 (875)
...|+|||.+++.+++. +.++||+++||+|||++++.++...+.. ..+++|||||. .|+.
T Consensus 111 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------------~~~~vlvl~P~~~L~~ 171 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN---------------YEGKILIIVPTTALTT 171 (510)
T ss_dssp EECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH---------------CSSEEEEEESSHHHHH
T ss_pred CCCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC---------------CCCeEEEEECcHHHHH
Confidence 34899999999999887 4789999999999999998877765421 23589999996 7899
Q ss_pred HHHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHH
Q 044036 213 NWEIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMA 289 (875)
Q Consensus 213 qW~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~ka 289 (875)
||.++|.+|.. ..+..++|....... .....+|+|+||+.+..... ....+|++||+||||++.+. .....
T Consensus 172 Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~~~-~~~~~~~liIiDE~H~~~~~--~~~~i 245 (510)
T 2oca_A 172 QMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPK-EWFSQFGMMMNDECHLATGK--SISSI 245 (510)
T ss_dssp HHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTSCG-GGGGGEEEEEEETGGGCCHH--HHHHH
T ss_pred HHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhchh-hhhhcCCEEEEECCcCCCcc--cHHHH
Confidence 99999999844 577777776432211 23567899999998876533 22247899999999999873 34445
Q ss_pred HHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 044036 290 CLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRK 368 (875)
Q Consensus 290 l~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~ 368 (875)
+..+ .+.++++||||| .+...+++.+..++.+..+.. +.. ..
T Consensus 246 l~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~----------~~~-----~~--------------------- 288 (510)
T 2oca_A 246 ISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPV----------TTS-----KL--------------------- 288 (510)
T ss_dssp GGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCC----------CCC----------------------------
T ss_pred HHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEee----------CHH-----HH---------------------
Confidence 5666 677899999999 555566676666655432110 000 00
Q ss_pred HHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCc
Q 044036 369 YLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPF 448 (875)
Q Consensus 369 ~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (875)
.....+++.....+.+.+++...... ....
T Consensus 289 ---------~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~------------------------------------- 318 (510)
T 2oca_A 289 ---------MEDGQVTELKINSIFLRYPDEFTTKL----KGKT------------------------------------- 318 (510)
T ss_dssp ----------------CCEEEEEEEECCHHHHHHH----TTCC-------------------------------------
T ss_pred ---------hhCCcCCCceEEEEeecCChHHhccc----cccc-------------------------------------
Confidence 00012334444556666665433110 0000
Q ss_pred cchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHh
Q 044036 449 CLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSW 528 (875)
Q Consensus 449 ~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~ 528 (875)
+. ..+.... ....|...+.+++..+
T Consensus 319 --~~---~~~~~~~--------------------------------------------------~~~~~~~~l~~~l~~~ 343 (510)
T 2oca_A 319 --YQ---EEIKIIT--------------------------------------------------GLSKRNKWIAKLAIKL 343 (510)
T ss_dssp --HH---HHHHHHH--------------------------------------------------TCHHHHHHHHHHHHHH
T ss_pred --hH---HHHHHHh--------------------------------------------------ccHHHHHHHHHHHHHH
Confidence 00 0000000 0113556677777766
Q ss_pred hcC-CCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEec-CCcccccCCCCCCEE
Q 044036 529 ASK-GDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIST-RAGGLGLNLVSANRV 606 (875)
Q Consensus 529 ~~~-g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt-~agg~GLNL~~An~V 606 (875)
... +.++|||+. +..++.|...|...+.++.+++|.++..+|+++++.|+++... +||+| +++++|+|++.+++|
T Consensus 344 ~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~--vLv~T~~~~~~GiDip~v~~v 420 (510)
T 2oca_A 344 AQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI--IIVASYGVFSTGISVKNLHHV 420 (510)
T ss_dssp HTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC--EEEEEHHHHHHSCCCCSEEEE
T ss_pred HhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC--EEEEEcChhhcccccccCcEE
Confidence 544 556777777 8888889999999988999999999999999999999976543 67777 999999999999999
Q ss_pred EEcCCCCCchhHHHhhhcccccCCcc-eEEEEEEeeCCCHHHHHH
Q 044036 607 VIFDPNWNPAQDLQAQDRSFRFGQKR-HVIVFRLLSAGSLEELVY 650 (875)
Q Consensus 607 I~~D~~WNp~~~~QaigR~~RiGQ~k-~V~VyrLi~~gTiEE~I~ 650 (875)
|++|++||+..+.|++||++|.|+.+ .|.||.++...++.++++
T Consensus 421 i~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~ 465 (510)
T 2oca_A 421 VLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSA 465 (510)
T ss_dssp EESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSS
T ss_pred EEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhh
Confidence 99999999999999999999999987 799999999877555443
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.8e-31 Score=297.58 Aligned_cols=316 Identities=17% Similarity=0.205 Sum_probs=225.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.|+|||.+++.+++. +.++|+.++||+|||++++..+...+... ....++|||||. .|+.||
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-------------~~~~~~lil~P~~~L~~q~ 92 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-------------TGQVSVLVMCHTRELAFQI 92 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCC-------------TTCCCEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhccc-------------CCCeeEEEECCCHHHHHHH
Confidence 499999999998765 68899999999999999877776654321 235689999997 789999
Q ss_pred HHHHHHhc----CCcEEEEeCCChh-HHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcccH--
Q 044036 215 EIEFSRWS----TFNVSIYHGPNRD-MILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEKSK-- 285 (875)
Q Consensus 215 ~~E~~k~~----~~~v~v~~G~~r~-~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~S~-- 285 (875)
.+++.+|. ..++..++|.... .....+..+..+|+|+|++.+.... ..+...++++||+||||++.+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~ 172 (391)
T 1xti_A 93 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRR 172 (391)
T ss_dssp HHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHH
T ss_pred HHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHH
Confidence 99999985 4778888887543 3344455566799999999886432 2233457899999999999764221
Q ss_pred -HHHHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHH
Q 044036 286 -LYMACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363 (875)
Q Consensus 286 -~~kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~ 363 (875)
....+... ....+++|||||-.+ ..++
T Consensus 173 ~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~-------------------------------------------------- 201 (391)
T 1xti_A 173 DVQEIFRMTPHEKQVMMFSATLSKE-IRPV-------------------------------------------------- 201 (391)
T ss_dssp HHHHHHHTSCSSSEEEEEESSCCST-HHHH--------------------------------------------------
T ss_pred HHHHHHhhCCCCceEEEEEeeCCHH-HHHH--------------------------------------------------
Confidence 11222223 355679999997421 1110
Q ss_pred HHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCC
Q 044036 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGC 443 (875)
Q Consensus 364 ~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (875)
+..++ . . ...+...-.. . . ...
T Consensus 202 --~~~~~---------~----~--~~~~~~~~~~----------~-------------~----------------~~~-- 223 (391)
T 1xti_A 202 --CRKFM---------Q----D--PMEIFVDDET----------K-------------L----------------TLH-- 223 (391)
T ss_dssp --HHHHC---------S----S--CEEEECCCCC----------C-------------C----------------CCT--
T ss_pred --HHHHc---------C----C--CeEEEecCcc----------c-------------c----------------Ccc--
Confidence 00000 0 0 0001100000 0 0 000
Q ss_pred CCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHH
Q 044036 444 DSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEK 523 (875)
Q Consensus 444 ~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~ 523 (875)
.. .+ . ........|...|.+
T Consensus 224 ---~~--------------~~-~------------------------------------------~~~~~~~~~~~~l~~ 243 (391)
T 1xti_A 224 ---GL--------------QQ-Y------------------------------------------YVKLKDNEKNRKLFD 243 (391)
T ss_dssp ---TC--------------EE-E------------------------------------------EEECCGGGHHHHHHH
T ss_pred ---cc--------------eE-E------------------------------------------EEEcCchhHHHHHHH
Confidence 00 00 0 000112247777888
Q ss_pred HHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCC
Q 044036 524 LMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSA 603 (875)
Q Consensus 524 LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~A 603 (875)
++... .+.|+|||+++...++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|+++++|+|++++
T Consensus 244 ~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 244 LLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR--ILVATNLFGRGMDIERV 319 (391)
T ss_dssp HHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS--EEEESCCCSSCBCCTTE
T ss_pred HHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc--EEEECChhhcCCCcccC
Confidence 88765 678999999999999999999999999999999999999999999999987554 89999999999999999
Q ss_pred CEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 604 NRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 604 n~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
+.||+||++||+..+.|++||++|.|+...+ +.|++..
T Consensus 320 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 357 (391)
T 1xti_A 320 NIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSDE 357 (391)
T ss_dssp EEEEESSCCSSHHHHHHHHCBCSSSCCCCEE--EEEECSH
T ss_pred CEEEEeCCCCCHHHHHHhcccccCCCCceEE--EEEEccc
Confidence 9999999999999999999999999987655 4455543
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.98 E-value=6.4e-32 Score=322.12 Aligned_cols=357 Identities=13% Similarity=0.131 Sum_probs=215.3
Q ss_pred hhcccHHHHHHHHHHHHHhhCC-CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNK-HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVI 211 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~-~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl 211 (875)
...|+|||.+++.++++.+..+ .+++|+++||+|||++++.++..++...+... .....+++||||| ..|+
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~-------~~~~~~~vlil~P~~~L~ 248 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRT-------GDYRKPRILFLADRNVLV 248 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSS-------CSSSCCCEEEEEC-----
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccc-------cccCCCeEEEEeCCHHHH
Confidence 4589999999999999887766 45799999999999999998888765432110 0125678999999 6889
Q ss_pred HHHH-HHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc------cccccccccEEEEcCCccccCcc-
Q 044036 212 QNWE-IEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG------SILSEVNWEIVIVDEAHRLKNEK- 283 (875)
Q Consensus 212 ~qW~-~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~------~~l~~~~w~~VIiDEAH~ikn~~- 283 (875)
.||. ++|..|.. .+..+.+.. ...+.+|+|+||+.+.... ..+....|++||+||||++.+..
T Consensus 249 ~Q~~~~~~~~~~~-~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~ 319 (590)
T 3h1t_A 249 DDPKDKTFTPFGD-ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDN 319 (590)
T ss_dssp ------CCTTTCS-SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-------
T ss_pred HHHHHHHHHhcch-hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccch
Confidence 9999 88888765 333333321 1235689999999987642 23444569999999999998753
Q ss_pred cHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHH
Q 044036 284 SKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363 (875)
Q Consensus 284 S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~ 363 (875)
+.....+..+...++++|||||..+...+++.++. .++.... +.
T Consensus 320 ~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~------------------~~ 363 (590)
T 3h1t_A 320 SNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS------------------LR 363 (590)
T ss_dssp --CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC------------------HH
T ss_pred HHHHHHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC------------------HH
Confidence 34445566677788999999999887766555432 1111000 00
Q ss_pred HHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCC
Q 044036 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGC 443 (875)
Q Consensus 364 ~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (875)
.. +....+.+.....+.................. ..
T Consensus 364 ~~------------i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------------------------ 399 (590)
T 3h1t_A 364 QG------------IDDGFLAPYRVHRVISEVDAAGWRPSKGDVDR--FG------------------------------ 399 (590)
T ss_dssp HH------------HHHTSSCCEEEEEEEETTCC----------------------------------------------
T ss_pred HH------------hhCCccCCcEEEEeeeeeeccccccccccccc--cc------------------------------
Confidence 00 11112222222223222221110000000000 00
Q ss_pred CCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHH-
Q 044036 444 DSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALE- 522 (875)
Q Consensus 444 ~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~- 522 (875)
..+.......... ... .....+.+.+.
T Consensus 400 ----------------------~~~~~~~~~~~~~---~~~---------------------------~~~~~r~~~i~~ 427 (590)
T 3h1t_A 400 ----------------------REIPDGEYQTKDF---ERV---------------------------IALKARTDAFAK 427 (590)
T ss_dssp -------------------------------CCSH---HHH---------------------------HHHHHTHHHHHH
T ss_pred ----------------------cccccccCCHHHh---hhH---------------------------hcChHHHHHHHH
Confidence 0000000000000 000 00011233333
Q ss_pred ---HHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCc--------EEEEeCCCCHHHHHHHHHHhcCCCC-ceEEEEe
Q 044036 523 ---KLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYS--------FSRLDGSTPSNLRQSLVDDFNSSPS-KQVFLIS 590 (875)
Q Consensus 523 ---~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~--------~~~ldG~~~~~eR~~~i~~F~~~~~-~~v~LiS 590 (875)
+.+... ..+.|+||||++...++.|...|...+.. +..++|.++ ++|++++++|+++.. ..++|+|
T Consensus 428 ~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvt 505 (590)
T 3h1t_A 428 HLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTT 505 (590)
T ss_dssp HHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEE
T ss_pred HHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEE
Confidence 333332 45689999999999999999999876543 678999986 379999999998654 4679999
Q ss_pred cCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCC---cceEEEEEEe
Q 044036 591 TRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQ---KRHVIVFRLL 640 (875)
Q Consensus 591 t~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ---~k~V~VyrLi 640 (875)
|+++++|+|++.++.||+++++||+..+.|++||++|.|+ +..+.||.++
T Consensus 506 t~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 506 SQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp SSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred CChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999999995 5678888877
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=9.1e-31 Score=292.10 Aligned_cols=310 Identities=16% Similarity=0.227 Sum_probs=222.4
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.|+|||.+++.+++. .+.++|+..+||+|||++++..+...+.. ....++|||||. .|+.||
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~--------------~~~~~~lil~P~~~L~~q~ 90 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNE--------------NNGIEAIILTPTRELAIQV 90 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCS--------------SSSCCEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhcc--------------cCCCcEEEEcCCHHHHHHH
Confidence 689999999999876 23678999999999999988777766432 245679999996 688999
Q ss_pred HHHHHHhcC---CcEEEEeCCChhH-HHHHHHhCCceEEEeeccccccccc--ccccccccEEEEcCCccccCcc--cHH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRDM-ILEKLEACGVEVLITSFDSYRIHGS--ILSEVNWEIVIVDEAHRLKNEK--SKL 286 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~~-~~~~~~~~~~~VvItTy~~l~~~~~--~l~~~~w~~VIiDEAH~ikn~~--S~~ 286 (875)
.+++.++++ ..+..++|..... ....+. ..+|+|+|++.+..... .+...+|++||+||||.+.+.. ...
T Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~ 168 (367)
T 1hv8_A 91 ADEIESLKGNKNLKIAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDV 168 (367)
T ss_dssp HHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH--TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHH
T ss_pred HHHHHHHhCCCCceEEEEECCcchHHHHhhcC--CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHH
Confidence 999999865 5677777765432 222222 57899999998864322 2334578999999999997654 223
Q ss_pred HHHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHH
Q 044036 287 YMACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365 (875)
Q Consensus 287 ~kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~ 365 (875)
...+..+ ...+.++|||||-.+ +.. .
T Consensus 169 ~~~~~~~~~~~~~i~~SAT~~~~----~~~-------------------------------------------------~ 195 (367)
T 1hv8_A 169 EKILNACNKDKRILLFSATMPRE----ILN-------------------------------------------------L 195 (367)
T ss_dssp HHHHHTSCSSCEEEEECSSCCHH----HHH-------------------------------------------------H
T ss_pred HHHHHhCCCCceEEEEeeccCHH----HHH-------------------------------------------------H
Confidence 3344444 456679999998321 000 0
Q ss_pred HHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCC
Q 044036 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDS 445 (875)
Q Consensus 366 L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (875)
+..+ .. . ...+...... .
T Consensus 196 ~~~~---------~~-----~-~~~~~~~~~~----------~------------------------------------- 213 (367)
T 1hv8_A 196 AKKY---------MG-----D-YSFIKAKINA----------N------------------------------------- 213 (367)
T ss_dssp HHHH---------CC-----S-EEEEECCSSS----------S-------------------------------------
T ss_pred HHHH---------cC-----C-CeEEEecCCC----------C-------------------------------------
Confidence 0000 00 0 0000000000 0
Q ss_pred CCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHH
Q 044036 446 CPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525 (875)
Q Consensus 446 ~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL 525 (875)
. .+.. . ......|+..|.+++
T Consensus 214 --~--------------~~~~-~------------------------------------------~~~~~~~~~~l~~~l 234 (367)
T 1hv8_A 214 --I--------------EQSY-V------------------------------------------EVNENERFEALCRLL 234 (367)
T ss_dssp --S--------------EEEE-E------------------------------------------ECCGGGHHHHHHHHH
T ss_pred --c--------------eEEE-E------------------------------------------EeChHHHHHHHHHHH
Confidence 0 0000 0 001123666666666
Q ss_pred HHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCE
Q 044036 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANR 605 (875)
Q Consensus 526 ~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~ 605 (875)
. ..+.++|||+++...++.+...|...|+.+..++|+++..+|.++++.|+++... +|++|+++++|+|++++++
T Consensus 235 ~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv~T~~~~~Gid~~~~~~ 309 (367)
T 1hv8_A 235 K---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR--ILIATDVMSRGIDVNDLNC 309 (367)
T ss_dssp C---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS--EEEECTTHHHHCCCSCCSE
T ss_pred h---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe--EEEECChhhcCCCcccCCE
Confidence 4 5788999999999999999999999999999999999999999999999987544 8899999999999999999
Q ss_pred EEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 606 VVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 606 VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
||++|++||+..+.|++||++|.|+...+ +.|+.....
T Consensus 310 Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 347 (367)
T 1hv8_A 310 VINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRREY 347 (367)
T ss_dssp EEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTSH
T ss_pred EEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHHH
Confidence 99999999999999999999999987655 556666544
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=6.1e-31 Score=299.07 Aligned_cols=318 Identities=17% Similarity=0.208 Sum_probs=224.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++.+++. ++++|+..+||+|||++++..+...+.. .....++|||||. .|+.||
T Consensus 59 ~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------------~~~~~~~lil~Pt~~L~~q~ 121 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDI-------------QVRETQALILAPTRELAVQI 121 (410)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCT-------------TSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhh-------------ccCCceEEEEcCcHHHHHHH
Confidence 489999999999876 6789999999999999988777665422 1245689999996 689999
Q ss_pred HHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHHH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKLY 287 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~~ 287 (875)
.+++.+++. ..+..++|.............+.+|+|+|++.+.... ..+....+++||+||||++.+.. ....
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~ 201 (410)
T 2j0s_A 122 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY 201 (410)
T ss_dssp HHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred HHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHH
Confidence 999999874 6677777765433222222346689999998775332 23444568999999999987654 2233
Q ss_pred HHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHH
Q 044036 288 MACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVL 366 (875)
Q Consensus 288 kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L 366 (875)
..+..+ .....+++||||-. ++..++... +..|....
T Consensus 202 ~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~------------------------ 239 (410)
T 2j0s_A 202 DVYRYLPPATQVVLISATLPH----EILEMTNKF--------------MTDPIRIL------------------------ 239 (410)
T ss_dssp HHHTTSCTTCEEEEEESCCCH----HHHTTGGGT--------------CSSCEEEC------------------------
T ss_pred HHHHhCccCceEEEEEcCCCH----HHHHHHHHH--------------cCCCEEEE------------------------
Confidence 334444 35678999999731 111100000 00000000
Q ss_pred HHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCC
Q 044036 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSC 446 (875)
Q Consensus 367 ~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (875)
... ....++......+.+
T Consensus 240 -------~~~--~~~~~~~~~~~~~~~----------------------------------------------------- 257 (410)
T 2j0s_A 240 -------VKR--DELTLEGIKQFFVAV----------------------------------------------------- 257 (410)
T ss_dssp -------CCG--GGCSCTTEEEEEEEE-----------------------------------------------------
T ss_pred -------ecC--ccccCCCceEEEEEe-----------------------------------------------------
Confidence 000 000000000000000
Q ss_pred CccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHH
Q 044036 447 PFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMY 526 (875)
Q Consensus 447 ~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~ 526 (875)
.....|+..|.+++.
T Consensus 258 -----------------------------------------------------------------~~~~~k~~~l~~~~~ 272 (410)
T 2j0s_A 258 -----------------------------------------------------------------EREEWKFDTLCDLYD 272 (410)
T ss_dssp -----------------------------------------------------------------SSTTHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------CcHHhHHHHHHHHHH
Confidence 001137777888887
Q ss_pred HhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEE
Q 044036 527 SWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRV 606 (875)
Q Consensus 527 ~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~V 606 (875)
.. .+.++|||+++...++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|+++++|+|++++++|
T Consensus 273 ~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~~Gidi~~v~~V 348 (410)
T 2j0s_A 273 TL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR--VLISTDVWARGLDVPQVSLI 348 (410)
T ss_dssp HH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC--EEEECGGGSSSCCCTTEEEE
T ss_pred hc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC--EEEECChhhCcCCcccCCEE
Confidence 65 456999999999999999999999999999999999999999999999987544 88999999999999999999
Q ss_pred EEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 607 VIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 607 I~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
|+||++||+..+.|++||++|.|++. .++.|+.....
T Consensus 349 i~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~~ 385 (410)
T 2j0s_A 349 INYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDDI 385 (410)
T ss_dssp EESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGGH
T ss_pred EEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHHH
Confidence 99999999999999999999999765 45666776543
No 19
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.97 E-value=1.2e-31 Score=286.82 Aligned_cols=216 Identities=16% Similarity=0.131 Sum_probs=156.7
Q ss_pred CCceeEEEEecCCHHHHHHHHHHhc--chhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHH
Q 044036 384 MGKEDNVVFCTMSDLQKRAYRRLLQ--LPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQI 461 (875)
Q Consensus 384 p~k~e~vv~~~lt~~q~~~Y~~~l~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~ 461 (875)
|.+.|++++|+||+.|+++|+.++. ...+......... .. . .....+..+++.||++
T Consensus 21 ~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~----~~-~----------------~~~~sl~nli~qLRki 79 (328)
T 3hgt_A 21 NTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHY----KE-D----------------VILESMKTMCLNGSLV 79 (328)
T ss_dssp -CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTT----CC-H----------------HHHHHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCC----cc-c----------------hHHHHHHHHHHHHHHH
Confidence 7899999999999999999999984 3334433332110 00 0 0012356788999999
Q ss_pred hccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHhhcCCCeEEEEecc
Q 044036 462 SNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYS 541 (875)
Q Consensus 462 ~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~ 541 (875)
||||+++............. ......+.|||+.+|.+||..+.+.|+|||||||+
T Consensus 80 cnHP~L~~d~~~p~~~~~~~-------------------------~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~ 134 (328)
T 3hgt_A 80 ATHPYLLIDHYMPKSLITRD-------------------------VPAHLAENSGKFSVLRDLINLVQEYETETAIVCRP 134 (328)
T ss_dssp HHCGGGTCCTTCCSCSCSTT-------------------------HHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECS
T ss_pred cCChhhhccccCCccccccc-------------------------hhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECC
Confidence 99999985322111000000 00011457899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccC-----CCCCCEEEEcCCCCCch
Q 044036 542 VRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLN-----LVSANRVVIFDPNWNPA 616 (875)
Q Consensus 542 ~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLN-----L~~An~VI~~D~~WNp~ 616 (875)
++++|+|+.+|..+|++|.|+||++... +++. . +.+.+++|+ |.+||.|+| |+.||+||+||++|||+
T Consensus 135 t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~-~----~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~ 207 (328)
T 3hgt_A 135 GRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA-N----DFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTS 207 (328)
T ss_dssp THHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTT
T ss_pred hhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc-c----cCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCC
Confidence 9999999999999999999999996543 2222 1 234567777 568888886 89999999999999999
Q ss_pred hH-HHhhhccccc--CCcceEEEEEEeeCCCHHHHHHHH
Q 044036 617 QD-LQAQDRSFRF--GQKRHVIVFRLLSAGSLEELVYTR 652 (875)
Q Consensus 617 ~~-~QaigR~~Ri--GQ~k~V~VyrLi~~gTiEE~I~~r 652 (875)
.+ .||+.|+||+ ||+++|.||||++.||||+.++..
T Consensus 208 ~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 208 QKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp SHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred ChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 98 9999999999 789999999999999999998875
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=3.7e-30 Score=291.53 Aligned_cols=314 Identities=16% Similarity=0.156 Sum_probs=223.4
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.|+|||.+++.+++. +.++|+..+||+|||++++..+...+.. .....++|||||. .|+.||
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~-------------~~~~~~~lil~P~~~L~~q~ 105 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKP-------------KLNKIQALIMVPTRELALQT 105 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCT-------------TSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhh-------------ccCCccEEEEcCCHHHHHHH
Confidence 599999999999886 6789999999999999987777665422 1235579999996 788999
Q ss_pred HHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcccHHHHH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEKSKLYMA 289 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~S~~~ka 289 (875)
.+++.+++. ..+..++|.............+.+|+|+|++.+.... ..+...++++||+||||++.+.. ....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~--~~~~ 183 (400)
T 1s2m_A 106 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD--FKTI 183 (400)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH--HHHH
T ss_pred HHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc--hHHH
Confidence 999999874 6777888775443222222456789999999875332 22333468999999999986642 2222
Q ss_pred HHh----c-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHH
Q 044036 290 CLE----L-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364 (875)
Q Consensus 290 l~~----l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~ 364 (875)
+.. + .....++||||+-. + +..
T Consensus 184 ~~~i~~~~~~~~~~i~lSAT~~~----~-------------------------------------------------~~~ 210 (400)
T 1s2m_A 184 IEQILSFLPPTHQSLLFSATFPL----T-------------------------------------------------VKE 210 (400)
T ss_dssp HHHHHTTSCSSCEEEEEESCCCH----H-------------------------------------------------HHH
T ss_pred HHHHHHhCCcCceEEEEEecCCH----H-------------------------------------------------HHH
Confidence 222 2 35567999999621 0 000
Q ss_pred HHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCC
Q 044036 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCD 444 (875)
Q Consensus 365 ~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (875)
.+..++ ... ..+ ..... ... .
T Consensus 211 ~~~~~~-------------~~~--~~~--~~~~~--------~~~-------------------------------~--- 231 (400)
T 1s2m_A 211 FMVKHL-------------HKP--YEI--NLMEE--------LTL-------------------------------K--- 231 (400)
T ss_dssp HHHHHC-------------SSC--EEE--SCCSS--------CBC-------------------------------T---
T ss_pred HHHHHc-------------CCC--eEE--Eeccc--------ccc-------------------------------C---
Confidence 000000 000 000 00000 000 0
Q ss_pred CCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHH
Q 044036 445 SCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKL 524 (875)
Q Consensus 445 ~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~L 524 (875)
. + .+.. .......|+..|..+
T Consensus 232 --~-------------~-~~~~-------------------------------------------~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 232 --G-------------I-TQYY-------------------------------------------AFVEERQKLHCLNTL 252 (400)
T ss_dssp --T-------------E-EEEE-------------------------------------------EECCGGGHHHHHHHH
T ss_pred --C-------------c-eeEE-------------------------------------------EEechhhHHHHHHHH
Confidence 0 0 0000 001112477788888
Q ss_pred HHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCC
Q 044036 525 MYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSAN 604 (875)
Q Consensus 525 L~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An 604 (875)
+... .+.++|||+++...++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|+++++|+|+++++
T Consensus 253 ~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 253 FSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR--TLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS--EEEESSCSSSSCCCTTEE
T ss_pred Hhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc--EEEEcCccccCCCccCCC
Confidence 8764 567999999999999999999999999999999999999999999999987544 889999999999999999
Q ss_pred EEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 605 RVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 605 ~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
.||+||++||+..+.|++||++|.|+.. .+|.|+..+..
T Consensus 329 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~~~ 367 (400)
T 1s2m_A 329 VVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWNDR 367 (400)
T ss_dssp EEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGGGH
T ss_pred EEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccchH
Confidence 9999999999999999999999999764 45667776643
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=5.8e-30 Score=282.34 Aligned_cols=308 Identities=17% Similarity=0.229 Sum_probs=212.3
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.|+|||.+++.++.+ ++++++..+||+|||++++..+... ..++|||||. .|+.||
T Consensus 16 ~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-------------------~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-------------------GMKSLVVTPTRELTRQV 72 (337)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-------------------TCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-------------------cCCEEEEeCCHHHHHHH
Confidence 589999999998875 6789999999999999887766532 4569999996 788999
Q ss_pred HHHHHHhcC---CcEEEEeCCChhHH-HHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRDMI-LEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKL 286 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~~~-~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~ 286 (875)
.+++.+|+. .++..++|...... ...+ ...+|+|+|++.+.... ..+...+|++||+||||++.+.. ...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~ 150 (337)
T 2z0m_A 73 ASHIRDIGRYMDTKVAEVYGGMPYKAQINRV--RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDI 150 (337)
T ss_dssp HHHHHHHTTTSCCCEEEECTTSCHHHHHHHH--TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhcCCcEEEEECCcchHHHHhhc--CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHH
Confidence 999998864 67777887654322 2222 34789999999886532 23344578999999999986543 223
Q ss_pred HHHHHhcccc-ceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHH
Q 044036 287 YMACLELKTR-NRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365 (875)
Q Consensus 287 ~kal~~l~~~-~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~ 365 (875)
...+..+... ..+++||||-.. +. ..
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~----~~-------------------------------------------------~~ 177 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEE----IR-------------------------------------------------KV 177 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHH----HH-------------------------------------------------HH
T ss_pred HHHHhhCCcccEEEEEeCcCCHH----HH-------------------------------------------------HH
Confidence 3344444444 446789998311 00 00
Q ss_pred HHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCC
Q 044036 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDS 445 (875)
Q Consensus 366 L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (875)
+..++ ... .. +.... ....
T Consensus 178 ~~~~~-------------~~~-~~-~~~~~------------~~~~---------------------------------- 196 (337)
T 2z0m_A 178 VKDFI-------------TNY-EE-IEACI------------GLAN---------------------------------- 196 (337)
T ss_dssp HHHHS-------------CSC-EE-EECSG------------GGGG----------------------------------
T ss_pred HHHhc-------------CCc-ee-eeccc------------ccCC----------------------------------
Confidence 00000 000 00 00000 0000
Q ss_pred CCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHH
Q 044036 446 CPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525 (875)
Q Consensus 446 ~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL 525 (875)
..+..... ..+.......+
T Consensus 197 ----------------~~~~~~~~---------------------------------------------~~~~~~~~~~~ 215 (337)
T 2z0m_A 197 ----------------VEHKFVHV---------------------------------------------KDDWRSKVQAL 215 (337)
T ss_dssp ----------------EEEEEEEC---------------------------------------------SSSSHHHHHHH
T ss_pred ----------------ceEEEEEe---------------------------------------------ChHHHHHHHHH
Confidence 00000000 00001111222
Q ss_pred HHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCE
Q 044036 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANR 605 (875)
Q Consensus 526 ~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~ 605 (875)
.. ..+.++|||+++...++.+...|. .+..++|+++..+|.+++++|+++... +|++|+++++|+|+++++.
T Consensus 216 ~~--~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv~T~~~~~Gid~~~~~~ 287 (337)
T 2z0m_A 216 RE--NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD--MLITTDVASRGLDIPLVEK 287 (337)
T ss_dssp HT--CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS--EEEECHHHHTTCCCCCBSE
T ss_pred Hh--CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc--EEEEcCccccCCCccCCCE
Confidence 22 467899999999999999988886 678999999999999999999987554 8999999999999999999
Q ss_pred EEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHH
Q 044036 606 VVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTR 652 (875)
Q Consensus 606 VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~r 652 (875)
||+||++||+..+.|++||++|.|+...+.+|.. .+..+.+.|.+.
T Consensus 288 Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~ 333 (337)
T 2z0m_A 288 VINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKV 333 (337)
T ss_dssp EEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC--
T ss_pred EEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHH
Confidence 9999999999999999999999999888877766 555566655544
No 22
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=4.9e-29 Score=285.91 Aligned_cols=317 Identities=15% Similarity=0.203 Sum_probs=222.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHH-HhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAA-VFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~-l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
.++|+|..++..++. ++.+|+..+||+|||+.++..+.. ++..... .......+|||||. .|+.|
T Consensus 78 ~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---------~~~~~~~~lil~PtreLa~Q 144 (434)
T 2db3_A 78 IPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHE---------LELGRPQVVIVSPTRELAIQ 144 (434)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC---------CCTTCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccc---------cccCCccEEEEecCHHHHHH
Confidence 589999999998765 789999999999999986654443 3322110 01235689999996 68999
Q ss_pred HHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHH
Q 044036 214 WEIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKL 286 (875)
Q Consensus 214 W~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~ 286 (875)
|.+++.+++. .++.+++|.............+++|+|+|++.+.... ..+...++++||+||||++.+.. ...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~ 224 (434)
T 2db3_A 145 IFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDM 224 (434)
T ss_dssp HHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred HHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHH
Confidence 9999999874 5677777765443333333457899999999886432 22334467999999999987653 233
Q ss_pred HHHHHhc---cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHH
Q 044036 287 YMACLEL---KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363 (875)
Q Consensus 287 ~kal~~l---~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~ 363 (875)
.+.+..+ .....+++|||+- .++.
T Consensus 225 ~~i~~~~~~~~~~q~l~~SAT~~----~~~~------------------------------------------------- 251 (434)
T 2db3_A 225 RRIMTHVTMRPEHQTLMFSATFP----EEIQ------------------------------------------------- 251 (434)
T ss_dssp HHHHHCTTSCSSCEEEEEESCCC----HHHH-------------------------------------------------
T ss_pred HHHHHhcCCCCCceEEEEeccCC----HHHH-------------------------------------------------
Confidence 3444443 3456799999962 1110
Q ss_pred HHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCC
Q 044036 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGC 443 (875)
Q Consensus 364 ~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (875)
.+.. ..+.. ...+.+.... . ..
T Consensus 252 ~~~~-------------~~l~~--~~~i~~~~~~----------~---------------------------------~~ 273 (434)
T 2db3_A 252 RMAG-------------EFLKN--YVFVAIGIVG----------G---------------------------------AC 273 (434)
T ss_dssp HHHH-------------TTCSS--CEEEEESSTT----------C---------------------------------CC
T ss_pred HHHH-------------HhccC--CEEEEecccc----------c---------------------------------cc
Confidence 0000 00100 0111110000 0 00
Q ss_pred CCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHH
Q 044036 444 DSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEK 523 (875)
Q Consensus 444 ~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~ 523 (875)
. . + .+. + .......|...|.+
T Consensus 274 ~--~-------------i-~~~----------------------------------------~---~~~~~~~k~~~l~~ 294 (434)
T 2db3_A 274 S--D-------------V-KQT----------------------------------------I---YEVNKYAKRSKLIE 294 (434)
T ss_dssp T--T-------------E-EEE----------------------------------------E---EECCGGGHHHHHHH
T ss_pred c--c-------------c-ceE----------------------------------------E---EEeCcHHHHHHHHH
Confidence 0 0 0 000 0 00111247777888
Q ss_pred HHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCC
Q 044036 524 LMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSA 603 (875)
Q Consensus 524 LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~A 603 (875)
+|... +.++|||+++...++.+...|...|+.+..++|++++.+|.+++++|+++... +||+|+++++|||+.++
T Consensus 295 ~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~--vLvaT~v~~rGlDi~~v 369 (434)
T 2db3_A 295 ILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK--VLIATSVASRGLDIKNI 369 (434)
T ss_dssp HHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS--EEEECGGGTSSCCCTTC
T ss_pred HHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc--EEEEchhhhCCCCcccC
Confidence 87764 44599999999999999999999999999999999999999999999987554 89999999999999999
Q ss_pred CEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 604 NRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 604 n~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
++||+||++|++..+.||+||++|.|+...+ +.|+..
T Consensus 370 ~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a--~~~~~~ 406 (434)
T 2db3_A 370 KHVINYDMPSKIDDYVHRIGRTGRVGNNGRA--TSFFDP 406 (434)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSSCTTCCEEE--EEEECT
T ss_pred CEEEEECCCCCHHHHHHHhcccccCCCCCEE--EEEEec
Confidence 9999999999999999999999999986554 455663
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=4.9e-30 Score=291.59 Aligned_cols=316 Identities=17% Similarity=0.214 Sum_probs=212.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++. ++++|+..+||+|||++++..+...+.. ....+++|||||. .|+.||
T Consensus 62 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------------~~~~~~~lil~P~~~L~~q~ 124 (414)
T 3eiq_A 62 KPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIEL-------------DLKATQALVLAPTRELAQQI 124 (414)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCT-------------TSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhh-------------cCCceeEEEEeChHHHHHHH
Confidence 689999999988776 7789999999999999977776655432 1245679999996 688999
Q ss_pred HHHHHHhcC---CcEEEEeCCC-hhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHH
Q 044036 215 EIEFSRWST---FNVSIYHGPN-RDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKL 286 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~-r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~ 286 (875)
.+++.+++. ..+....|.. .......+...+.+|+|+|++.+.... ..+....+++||+||||++.+.. ...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~ 204 (414)
T 3eiq_A 125 QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI 204 (414)
T ss_dssp HHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHH
T ss_pred HHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHH
Confidence 999999864 5566555553 334444444567899999998875432 22344468999999999986543 344
Q ss_pred HHHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHH
Q 044036 287 YMACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365 (875)
Q Consensus 287 ~kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~ 365 (875)
...+..+ ...+.++|||||-. ++..+
T Consensus 205 ~~~~~~~~~~~~~i~~SAT~~~----~~~~~------------------------------------------------- 231 (414)
T 3eiq_A 205 YDIFQKLNSNTQVVLLSATMPS----DVLEV------------------------------------------------- 231 (414)
T ss_dssp HHHHTTSCTTCEEEEECSCCCH----HHHHH-------------------------------------------------
T ss_pred HHHHHhCCCCCeEEEEEEecCH----HHHHH-------------------------------------------------
Confidence 4555555 45567999999821 10000
Q ss_pred HHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCC
Q 044036 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDS 445 (875)
Q Consensus 366 L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (875)
+. ..+.. ...+....... . ...
T Consensus 232 ~~-------------~~~~~--~~~~~~~~~~~---------~-------------------------------~~~--- 253 (414)
T 3eiq_A 232 TK-------------KFMRD--PIRILVKKEEL---------T-------------------------------LEG--- 253 (414)
T ss_dssp HT-------------TTCSS--CEEECCCCCCC---------C-------------------------------TTS---
T ss_pred HH-------------HHcCC--CEEEEecCCcc---------C-------------------------------CCC---
Confidence 00 00000 00000000000 0 000
Q ss_pred CCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHH
Q 044036 446 CPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525 (875)
Q Consensus 446 ~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL 525 (875)
..+. +. .......|+..|..++
T Consensus 254 ----------------~~~~----------------------------------------~~--~~~~~~~~~~~l~~~~ 275 (414)
T 3eiq_A 254 ----------------IRQF----------------------------------------YI--NVEREEWKLDTLCDLY 275 (414)
T ss_dssp ----------------CCEE----------------------------------------EE--ECSSSTTHHHHHHHHH
T ss_pred ----------------ceEE----------------------------------------EE--EeChHHhHHHHHHHHH
Confidence 0000 00 0001123778888888
Q ss_pred HHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCE
Q 044036 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANR 605 (875)
Q Consensus 526 ~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~ 605 (875)
... .+.++|||+++...++.+...|...|+.+..++|+++..+|.++++.|+++... +||+|+++++|+|+++++.
T Consensus 276 ~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~~Gidip~v~~ 351 (414)
T 3eiq_A 276 ETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR--VLITTDLLARGIDVQQVSL 351 (414)
T ss_dssp HSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECSSCC--CCGGGCSC
T ss_pred HhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc--EEEECCccccCCCccCCCE
Confidence 764 567999999999999999999999999999999999999999999999986543 7999999999999999999
Q ss_pred EEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 606 VVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 606 VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
||+||++||+..+.|++||++|.|+... +|.|++..
T Consensus 352 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 352 VINYDLPTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp EEESSCCSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred EEEeCCCCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 9999999999999999999999997654 56677766
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=3.6e-29 Score=282.01 Aligned_cols=314 Identities=16% Similarity=0.187 Sum_probs=215.7
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..++|||.+++..++.. .+.++|+..+||+|||++++..+...+.. ....+++|||||. .|+.|
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------------~~~~~~~lil~P~~~L~~q 90 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNP-------------EDASPQAICLAPSRELARQ 90 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCT-------------TCCSCCEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhcc-------------CCCCccEEEECCCHHHHHH
Confidence 36899999999988652 23788999999999999988777665432 1245689999996 58899
Q ss_pred HHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCccc--HH
Q 044036 214 WEIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEKS--KL 286 (875)
Q Consensus 214 W~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~S--~~ 286 (875)
|.+++.+++. ..+...+|...... ...+.+|+|+|++.+.... ..+...++++||+||||++.+... ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~ 166 (395)
T 3pey_A 91 TLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQ 166 (395)
T ss_dssp HHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHH
T ss_pred HHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHH
Confidence 9999998764 56666666532211 1235789999999876432 223344689999999999865322 22
Q ss_pred HHHH-Hhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHH
Q 044036 287 YMAC-LEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364 (875)
Q Consensus 287 ~kal-~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~ 364 (875)
...+ ..+ .....++|||||-. .+..+...+.+ .+....
T Consensus 167 ~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~--------------~~~~~~---------------------- 206 (395)
T 3pey_A 167 CIRVKRFLPKDTQLVLFSATFAD----AVRQYAKKIVP--------------NANTLE---------------------- 206 (395)
T ss_dssp HHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHHSC--------------SCEEEC----------------------
T ss_pred HHHHHHhCCCCcEEEEEEecCCH----HHHHHHHHhCC--------------CCeEEE----------------------
Confidence 2222 223 34567999999731 11000000000 000000
Q ss_pred HHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCC
Q 044036 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCD 444 (875)
Q Consensus 365 ~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (875)
. ......+.... ..+...
T Consensus 207 ---------~---~~~~~~~~~~~-~~~~~~------------------------------------------------- 224 (395)
T 3pey_A 207 ---------L---QTNEVNVDAIK-QLYMDC------------------------------------------------- 224 (395)
T ss_dssp ---------C---CGGGCSCTTEE-EEEEEC-------------------------------------------------
T ss_pred ---------c---ccccccccccc-EEEEEc-------------------------------------------------
Confidence 0 00000000000 000000
Q ss_pred CCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHH
Q 044036 445 SCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKL 524 (875)
Q Consensus 445 ~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~L 524 (875)
.....|...+..+
T Consensus 225 -------------------------------------------------------------------~~~~~~~~~l~~~ 237 (395)
T 3pey_A 225 -------------------------------------------------------------------KNEADKFDVLTEL 237 (395)
T ss_dssp -------------------------------------------------------------------SSHHHHHHHHHHH
T ss_pred -------------------------------------------------------------------CchHHHHHHHHHH
Confidence 0111355566666
Q ss_pred HHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCC
Q 044036 525 MYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSAN 604 (875)
Q Consensus 525 L~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An 604 (875)
+... .+.++|||+++...++.+...|...|+.+..++|+++..+|.++++.|+++... +|++|+++++|+|+++++
T Consensus 238 ~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~~Gidip~~~ 313 (395)
T 3pey_A 238 YGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK--VLITTNVLARGIDIPTVS 313 (395)
T ss_dssp HTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC--EEEECGGGSSSCCCTTEE
T ss_pred HHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC--EEEECChhhcCCCcccCC
Confidence 6543 567999999999999999999999999999999999999999999999987544 899999999999999999
Q ss_pred EEEEcCCCC------CchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 605 RVVIFDPNW------NPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 605 ~VI~~D~~W------Np~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
+||+||++| |+..+.|++||++|.|+...+ +.|+..
T Consensus 314 ~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~ 355 (395)
T 3pey_A 314 MVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVA--ISFVHD 355 (395)
T ss_dssp EEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS
T ss_pred EEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceE--EEEEec
Confidence 999999999 999999999999999976554 445554
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=1.5e-30 Score=293.58 Aligned_cols=315 Identities=17% Similarity=0.199 Sum_probs=112.8
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..|+|||.+++.+++. +.++++..+||+|||++++..+...+.. ....+++|||||. .|+.|
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~-------------~~~~~~~lil~P~~~L~~q 104 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDT-------------SVKAPQALMLAPTRELALQ 104 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCT-------------TCCSCCEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhc-------------cCCCCCEEEEcCCHHHHHH
Confidence 3799999999999887 6789999999999999966655554322 1245689999996 78999
Q ss_pred HHHHHHHhcC---CcEEEEeCCChhH-HHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cH
Q 044036 214 WEIEFSRWST---FNVSIYHGPNRDM-ILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SK 285 (875)
Q Consensus 214 W~~E~~k~~~---~~v~v~~G~~r~~-~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~ 285 (875)
|.+++.++.. .++..++|..... ....+. +.+|+|+|++.+.... ..+...+|++||+||||++.+.. ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~ 182 (394)
T 1fuu_A 105 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQ 182 (394)
T ss_dssp HHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH--HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHH
T ss_pred HHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC--CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHH
Confidence 9999999864 6778888765432 222222 4689999999875432 23334578999999999985432 23
Q ss_pred HHHHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHH
Q 044036 286 LYMACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364 (875)
Q Consensus 286 ~~kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~ 364 (875)
....+..+ ...++++|||||-. ++..
T Consensus 183 ~~~~~~~~~~~~~~i~~SAT~~~----~~~~------------------------------------------------- 209 (394)
T 1fuu_A 183 IYQIFTLLPPTTQVVLLSATMPN----DVLE------------------------------------------------- 209 (394)
T ss_dssp HHHHHHHSCTTCEEEEECSSCCH----HHHH-------------------------------------------------
T ss_pred HHHHHHhCCCCceEEEEEEecCH----HHHH-------------------------------------------------
Confidence 34444444 34568999999831 0000
Q ss_pred HHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCC
Q 044036 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCD 444 (875)
Q Consensus 365 ~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (875)
.+..++ .. ...+...-..... ..+..
T Consensus 210 ~~~~~~-------------~~--~~~~~~~~~~~~~---~~~~~------------------------------------ 235 (394)
T 1fuu_A 210 VTTKFM-------------RN--PVRILVKKDELTL---EGIKQ------------------------------------ 235 (394)
T ss_dssp HHHHHC-------------CS--CEEEEECC-------------------------------------------------
T ss_pred HHHHhc-------------CC--CeEEEecCccccC---CCceE------------------------------------
Confidence 000000 00 0001110000000 00000
Q ss_pred CCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHH
Q 044036 445 SCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKL 524 (875)
Q Consensus 445 ~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~L 524 (875)
.... . .....|...+..+
T Consensus 236 ---------~~~~----------~-------------------------------------------~~~~~~~~~l~~~ 253 (394)
T 1fuu_A 236 ---------FYVN----------V-------------------------------------------EEEEYKYECLTDL 253 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------EEEE----------c-------------------------------------------CchhhHHHHHHHH
Confidence 0000 0 0000144445555
Q ss_pred HHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCC
Q 044036 525 MYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSAN 604 (875)
Q Consensus 525 L~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An 604 (875)
+... .+.++|||+++...++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|+++++|+|+++++
T Consensus 254 ~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv~T~~~~~Gldi~~~~ 329 (394)
T 1fuu_A 254 YDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR--ILISTDLLARGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCc--EEEECChhhcCCCcccCC
Confidence 5543 467999999999999999999999999999999999999999999999876543 889999999999999999
Q ss_pred EEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 605 RVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 605 ~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
+||+||++|++..+.|++||++|.|+...+ +.|++..
T Consensus 330 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 366 (394)
T 1fuu_A 330 LVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNE 366 (394)
T ss_dssp ---------------------------------------
T ss_pred EEEEeCCCCCHHHHHHHcCcccCCCCCceE--EEEEchh
Confidence 999999999999999999999999987654 4455554
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=279.47 Aligned_cols=331 Identities=16% Similarity=0.189 Sum_probs=218.9
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHH-HHhcCCCCCcch-hhc---ccccCCCCcEEEEcCc-
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA-AVFGKDESSDST-ILK---DNKVDKKGYVLIICPS- 208 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~-~l~~~~~~~~~~-~~~---~~~~~~~~~~LIV~P~- 208 (875)
..++|+|.+++..+.. ++.+|+..+||+|||+.++..+. .+.......... +.. .........+|||+|.
T Consensus 36 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 3789999999987664 78899999999999997665444 333211100000 000 0011223579999996
Q ss_pred chHHHHHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc
Q 044036 209 SVIQNWEIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 209 sLl~qW~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~ 283 (875)
.|+.||.+++.+++. .++..++|.............+.+|+|+|++.+.... ..+....+++||+||||++....
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~ 191 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG 191 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccC
Confidence 789999999998864 6777788765433222223456799999999886432 22334467999999999986543
Q ss_pred -cHHHHHHHh---cc---ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHH
Q 044036 284 -SKLYMACLE---LK---TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIAD 356 (875)
Q Consensus 284 -S~~~kal~~---l~---~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~ 356 (875)
......+.. +. ....+++|||+-. ++..++.
T Consensus 192 ~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~-------------------------------------- 229 (417)
T 2i4i_A 192 FEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR-------------------------------------- 229 (417)
T ss_dssp CHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH--------------------------------------
T ss_pred cHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH--------------------------------------
Confidence 222222222 11 3457999999731 1110000
Q ss_pred HHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhh
Q 044036 357 ERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKR 436 (875)
Q Consensus 357 ~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 436 (875)
.+ .. . ...+.+.-.. ....
T Consensus 230 -----------~~---------~~----~--~~~~~~~~~~---------~~~~-------------------------- 248 (417)
T 2i4i_A 230 -----------DF---------LD----E--YIFLAVGRVG---------STSE-------------------------- 248 (417)
T ss_dssp -----------HH---------CS----S--CEEEEEC-------------CCS--------------------------
T ss_pred -----------HH---------cC----C--CEEEEeCCCC---------CCcc--------------------------
Confidence 00 00 0 0001000000 0000
Q ss_pred ccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCc
Q 044036 437 LDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCG 516 (875)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 516 (875)
+ ..+... ......
T Consensus 249 --~----------------------i~~~~~-------------------------------------------~~~~~~ 261 (417)
T 2i4i_A 249 --N----------------------ITQKVV-------------------------------------------WVEESD 261 (417)
T ss_dssp --S----------------------EEEEEE-------------------------------------------ECCGGG
T ss_pred --C----------------------ceEEEE-------------------------------------------EeccHh
Confidence 0 000000 001124
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCccc
Q 044036 517 KMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGL 596 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~ 596 (875)
|...|.+++... ..+.++|||+++...++.+...|...|+.+..++|+++..+|.++++.|+++... +|++|+++++
T Consensus 262 ~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vlvaT~~~~~ 338 (417)
T 2i4i_A 262 KRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP--ILVATAVAAR 338 (417)
T ss_dssp HHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC--EEEECHHHHT
T ss_pred HHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC--EEEECChhhc
Confidence 677788887764 4678999999999999999999999999999999999999999999999986544 8999999999
Q ss_pred ccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCC
Q 044036 597 GLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGS 644 (875)
Q Consensus 597 GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gT 644 (875)
|+|+++++.||+||++|++..+.|++||++|.|+.. .+|.|+....
T Consensus 339 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (417)
T 2i4i_A 339 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNERN 384 (417)
T ss_dssp TSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEEEEECGGG
T ss_pred CCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEEEEEcccc
Confidence 999999999999999999999999999999999764 4566666543
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=2.5e-27 Score=268.85 Aligned_cols=314 Identities=14% Similarity=0.171 Sum_probs=213.8
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++.. .+..+|+..+||+|||++++..+...+.. ....+++|||||. .|+.||
T Consensus 47 ~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------~~~~~~~lil~P~~~L~~q~ 111 (412)
T 3fht_A 47 RPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------------ANKYPQCLCLSPTYELALQT 111 (412)
T ss_dssp SCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCT-------------TSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhh-------------cCCCCCEEEECCCHHHHHHH
Confidence 6899999999887651 24788999999999999986666554422 1235589999996 578889
Q ss_pred HHHHHHhcC----CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc---cccccccccEEEEcCCccccCc--ccH
Q 044036 215 EIEFSRWST----FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG---SILSEVNWEIVIVDEAHRLKNE--KSK 285 (875)
Q Consensus 215 ~~E~~k~~~----~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~---~~l~~~~w~~VIiDEAH~ikn~--~S~ 285 (875)
.+.+.++.. ..+....|....... .....+|+|+|++.+.... ..+...++++||+||||++... ...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~ 188 (412)
T 3fht_A 112 GKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQD 188 (412)
T ss_dssp HHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHH
T ss_pred HHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHH
Confidence 888887753 566666665322110 1235689999999886532 2344457899999999998542 222
Q ss_pred HHHHH-Hhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHH
Q 044036 286 LYMAC-LELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLV 363 (875)
Q Consensus 286 ~~kal-~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~ 363 (875)
....+ ..+. ....+++||||-. +++.++..
T Consensus 189 ~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~-------------------------------------------- 220 (412)
T 3fht_A 189 QSIRIQRMLPRNCQMLLFSATFED----SVWKFAQK-------------------------------------------- 220 (412)
T ss_dssp HHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHH--------------------------------------------
T ss_pred HHHHHHhhCCCCceEEEEEeecCH----HHHHHHHH--------------------------------------------
Confidence 22333 3333 4567999999731 11110000
Q ss_pred HHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCC
Q 044036 364 AVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGC 443 (875)
Q Consensus 364 ~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (875)
+ ++.. . .+.+.... . ...
T Consensus 221 -----~-------------~~~~--~--~~~~~~~~--------~------------------------------~~~-- 238 (412)
T 3fht_A 221 -----V-------------VPDP--N--VIKLKREE--------E------------------------------TLD-- 238 (412)
T ss_dssp -----H-------------SSSC--E--EECCCGGG--------S------------------------------SCT--
T ss_pred -----h-------------cCCC--e--EEeecccc--------c------------------------------ccc--
Confidence 0 0000 0 00000000 0 000
Q ss_pred CCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHH
Q 044036 444 DSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEK 523 (875)
Q Consensus 444 ~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~ 523 (875)
. ..+.... ......|+..|..
T Consensus 239 ---~--------------~~~~~~~------------------------------------------~~~~~~~~~~l~~ 259 (412)
T 3fht_A 239 ---T--------------IKQYYVL------------------------------------------CSSRDEKFQALCN 259 (412)
T ss_dssp ---T--------------EEEEEEE------------------------------------------CSSHHHHHHHHHH
T ss_pred ---C--------------ceEEEEE------------------------------------------cCChHHHHHHHHH
Confidence 0 0000000 0011236677777
Q ss_pred HHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCC
Q 044036 524 LMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSA 603 (875)
Q Consensus 524 LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~A 603 (875)
++... .+.++|||+++...++.+...|...|+.+..++|+++..+|..+++.|+++... +||+|+++++|+|++++
T Consensus 260 ~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~~Gidip~~ 335 (412)
T 3fht_A 260 LYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK--VLVTTNVCARGIDVEQV 335 (412)
T ss_dssp HHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS--EEEECGGGTSSCCCTTE
T ss_pred HHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc--EEEEcCccccCCCccCC
Confidence 77764 567999999999999999999999999999999999999999999999987554 89999999999999999
Q ss_pred CEEEEcCCCCCc------hhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 604 NRVVIFDPNWNP------AQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 604 n~VI~~D~~WNp------~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
+.||+||++||+ ..+.|++||++|.|+...+ +.|+..
T Consensus 336 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~ 378 (412)
T 3fht_A 336 SVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS 378 (412)
T ss_dssp EEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS
T ss_pred CEEEEECCCCCCCCCcchheeecccCcccCCCCCceE--EEEEcC
Confidence 999999999987 6999999999999976544 455544
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=3.6e-27 Score=276.11 Aligned_cols=300 Identities=16% Similarity=0.161 Sum_probs=217.8
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|+|.+++..++. ++.+++..+||+|||+.+...+.. ..+.+|||+|. +|+.+|
T Consensus 25 ~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~-------------------~~g~~lvi~P~~aL~~q~ 81 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL-------------------LNGLTVVVSPLISLMKDQ 81 (523)
T ss_dssp SCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH-------------------SSSEEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHH-------------------hCCCEEEECChHHHHHHH
Confidence 679999999998875 778999999999999876544332 24679999996 788999
Q ss_pred HHHHHHhcCCcEEEEeCCChh----HHHHHHHhCCceEEEeeccccccc--ccccccccccEEEEcCCccccCccc---H
Q 044036 215 EIEFSRWSTFNVSIYHGPNRD----MILEKLEACGVEVLITSFDSYRIH--GSILSEVNWEIVIVDEAHRLKNEKS---K 285 (875)
Q Consensus 215 ~~E~~k~~~~~v~v~~G~~r~----~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~w~~VIiDEAH~ikn~~S---~ 285 (875)
.+++..+ +..+..++|.... .....+..+..+|+++|++.+... ...+...++.+|||||||.+..... .
T Consensus 82 ~~~l~~~-gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~ 160 (523)
T 1oyw_A 82 VDQLQAN-GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP 160 (523)
T ss_dssp HHHHHHT-TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCH
T ss_pred HHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHH
Confidence 9999886 4567777776432 233455567789999999988533 2234446789999999999965431 2
Q ss_pred HHH----HHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHH
Q 044036 286 LYM----ACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQH 361 (875)
Q Consensus 286 ~~k----al~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 361 (875)
.+. ....+....+++|||||-.+...++...+.+-.+
T Consensus 161 ~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~--------------------------------------- 201 (523)
T 1oyw_A 161 EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP--------------------------------------- 201 (523)
T ss_dssp HHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSC---------------------------------------
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCC---------------------------------------
Confidence 222 2334456788999999853322222222111000
Q ss_pred HHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCC
Q 044036 362 LVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLD 441 (875)
Q Consensus 362 L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (875)
.++..-. ..
T Consensus 202 ----------------------------~~~~~~~-----------~r-------------------------------- 210 (523)
T 1oyw_A 202 ----------------------------LIQISSF-----------DR-------------------------------- 210 (523)
T ss_dssp ----------------------------EEEECCC-----------CC--------------------------------
T ss_pred ----------------------------eEEeCCC-----------CC--------------------------------
Confidence 0000000 00
Q ss_pred CCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHH
Q 044036 442 GCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRAL 521 (875)
Q Consensus 442 ~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L 521 (875)
+.+. ........|+..|
T Consensus 211 -----------------------~~l~----------------------------------------~~v~~~~~~~~~l 227 (523)
T 1oyw_A 211 -----------------------PNIR----------------------------------------YMLMEKFKPLDQL 227 (523)
T ss_dssp -----------------------TTEE----------------------------------------EEEEECSSHHHHH
T ss_pred -----------------------CceE----------------------------------------EEEEeCCCHHHHH
Confidence 0000 0000001356667
Q ss_pred HHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCC
Q 044036 522 EKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLV 601 (875)
Q Consensus 522 ~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~ 601 (875)
.++|... .+.++|||+++....+.+...|...|+.+..++|+++.++|..+++.|.++... +|++|.+.|.|||++
T Consensus 228 ~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~--vlVaT~a~~~GiD~p 303 (523)
T 1oyw_A 228 MRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ--IVVATVAFGMGINKP 303 (523)
T ss_dssp HHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEECTTSCTTTCCT
T ss_pred HHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe--EEEEechhhCCCCcc
Confidence 7777654 678999999999999999999999999999999999999999999999987644 889999999999999
Q ss_pred CCCEEEEcCCCCCchhHHHhhhcccccCCcceEEE
Q 044036 602 SANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIV 636 (875)
Q Consensus 602 ~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~V 636 (875)
+++.||+||+|+|+..+.|++||++|.|+...+.+
T Consensus 304 ~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp TCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 99999999999999999999999999998766544
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=9.8e-27 Score=265.03 Aligned_cols=299 Identities=16% Similarity=0.119 Sum_probs=215.1
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..++|||.+++..++. ++++|+..+||+|||+.++..+.... ...+++|||+|. .|+.|
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~----------------~~~~~~lil~Pt~~L~~q 79 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA----------------RKGKKSALVFPTVTLVKQ 79 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH----------------TTTCCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh----------------cCCCEEEEEECCHHHHHH
Confidence 3578999999998765 67899999999999996665555442 245689999996 78999
Q ss_pred HHHHHHHhc--CCcEEEEeCCChh----HHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccC------
Q 044036 214 WEIEFSRWS--TFNVSIYHGPNRD----MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKN------ 281 (875)
Q Consensus 214 W~~E~~k~~--~~~v~v~~G~~r~----~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn------ 281 (875)
|.+++.+|+ +.++..++|.... .....+..+.++|+|+|++.+......+...++++||+||||.+..
T Consensus 80 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d 159 (414)
T 3oiy_A 80 TLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNID 159 (414)
T ss_dssp HHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHH
T ss_pred HHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhh
Confidence 999999985 4788888887543 3345556666899999999987655555556899999999998732
Q ss_pred -------cccH-HHHHHHhc------------cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhcc
Q 044036 282 -------EKSK-LYMACLEL------------KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKH 341 (875)
Q Consensus 282 -------~~S~-~~kal~~l------------~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~ 341 (875)
.... ....+..+ .....+++||||......+.+ + ..
T Consensus 160 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~-~~------- 215 (414)
T 3oiy_A 160 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------F-RD------- 215 (414)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------H-HH-------
T ss_pred hHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------H-HH-------
Confidence 2222 33333333 445778999997654422110 0 00
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhc-cCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccC
Q 044036 342 GQRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGH-LMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDL 420 (875)
Q Consensus 342 g~~~~~~~~~~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~-~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~ 420 (875)
.+ . . .+... ..+..... .
T Consensus 216 -----------------------~~-----~-~--~~~~~~~~~~~i~~-~----------------------------- 234 (414)
T 3oiy_A 216 -----------------------LL-----N-F--TVGRLVSVARNITH-V----------------------------- 234 (414)
T ss_dssp -----------------------HH-----S-C--CSSCCCCCCCSEEE-E-----------------------------
T ss_pred -----------------------hh-----c-c--CcCccccccccchh-e-----------------------------
Confidence 00 0 0 00000 00000000 0
Q ss_pred CCCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCC
Q 044036 421 PCSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGN 500 (875)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 500 (875)
T Consensus 235 -------------------------------------------------------------------------------- 234 (414)
T 3oiy_A 235 -------------------------------------------------------------------------------- 234 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEE-EEeCCCCHHHHHHHHHHhc
Q 044036 501 AQNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFS-RLDGSTPSNLRQSLVDDFN 579 (875)
Q Consensus 501 ~~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~-~ldG~~~~~eR~~~i~~F~ 579 (875)
.....|...|..+|.. .+.++|||+++...++.+...|...|+.+. .++|. +|. ++.|+
T Consensus 235 -----------~~~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~ 294 (414)
T 3oiy_A 235 -----------RISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFK 294 (414)
T ss_dssp -----------EESSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHH
T ss_pred -----------eeccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHh
Confidence 0011366667777776 358999999999999999999999999998 88884 444 99999
Q ss_pred CCCCceEEEEe----cCCcccccCCCC-CCEEEEcCCC--CCchhHHHhhhcccccCCc--ceEEEEEEe
Q 044036 580 SSPSKQVFLIS----TRAGGLGLNLVS-ANRVVIFDPN--WNPAQDLQAQDRSFRFGQK--RHVIVFRLL 640 (875)
Q Consensus 580 ~~~~~~v~LiS----t~agg~GLNL~~-An~VI~~D~~--WNp~~~~QaigR~~RiGQ~--k~V~VyrLi 640 (875)
++... +|++ |+++++|+|+++ +++||+||++ +++..+.|++||++|.|+. +...++.|+
T Consensus 295 ~g~~~--vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 295 VGKIN--ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp TTSCS--EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred CCCCe--EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 87543 6666 999999999999 9999999999 9999999999999999986 566777777
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=1.5e-26 Score=273.76 Aligned_cols=306 Identities=14% Similarity=0.183 Sum_probs=211.9
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|+|.+++..++. ++.+|+..++|.|||+..+..+.. ..+.+|||+|. +|+.||
T Consensus 44 ~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~-------------------~~g~~lVisP~~~L~~q~ 100 (591)
T 2v1x_A 44 KFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC-------------------SDGFTLVICPLISLMEDQ 100 (591)
T ss_dssp SCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT-------------------SSSEEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH-------------------cCCcEEEEeCHHHHHHHH
Confidence 688999999998876 788999999999999875544421 24679999995 789999
Q ss_pred HHHHHHhcCCcEEEEeCCChhHH----HHHH--HhCCceEEEeeccccccc---cccc----ccccccEEEEcCCccccC
Q 044036 215 EIEFSRWSTFNVSIYHGPNRDMI----LEKL--EACGVEVLITSFDSYRIH---GSIL----SEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 215 ~~E~~k~~~~~v~v~~G~~r~~~----~~~~--~~~~~~VvItTy~~l~~~---~~~l----~~~~w~~VIiDEAH~ikn 281 (875)
.+.+.++ +..+..++|...... ...+ ..+..+|+++|++.+... ...+ ...++.+|||||||.+..
T Consensus 101 ~~~l~~~-gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~ 179 (591)
T 2v1x_A 101 LMVLKQL-GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQ 179 (591)
T ss_dssp HHHHHHH-TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGST
T ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccc
Confidence 9999987 667777777643322 2222 245789999999987532 1111 223789999999999864
Q ss_pred cc-------cHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHH
Q 044036 282 EK-------SKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRI 354 (875)
Q Consensus 282 ~~-------S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~ 354 (875)
.. ..+......+....+++|||||-..-..++...+..
T Consensus 180 ~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~----------------------------------- 224 (591)
T 2v1x_A 180 WGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCI----------------------------------- 224 (591)
T ss_dssp TCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTC-----------------------------------
T ss_pred cccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCC-----------------------------------
Confidence 32 112223334456788999999842111111111100
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHH
Q 044036 355 ADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECC 434 (875)
Q Consensus 355 ~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 434 (875)
+. ..++..- ....
T Consensus 225 -----------------------------~~---~~~~~~~-----------~~r~------------------------ 237 (591)
T 2v1x_A 225 -----------------------------EK---CFTFTAS-----------FNRP------------------------ 237 (591)
T ss_dssp -----------------------------CS---CEEEECC-----------CCCT------------------------
T ss_pred -----------------------------CC---cEEEecC-----------CCCc------------------------
Confidence 00 0011000 0000
Q ss_pred hhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCccc
Q 044036 435 KRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKS 514 (875)
Q Consensus 435 ~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (875)
|..+.+... ....
T Consensus 238 ----------------------------nl~~~v~~~---------------------------------------~~~~ 250 (591)
T 2v1x_A 238 ----------------------------NLYYEVRQK---------------------------------------PSNT 250 (591)
T ss_dssp ----------------------------TEEEEEEEC---------------------------------------CSSH
T ss_pred ----------------------------ccEEEEEeC---------------------------------------CCcH
Confidence 000000000 0000
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..++..|.+++... ..+.++|||+.+....+.+...|...|+.+..++|+++..+|..+++.|.++... +||+|.+.
T Consensus 251 ~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~--VlVAT~a~ 327 (591)
T 2v1x_A 251 EDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ--VVVATVAF 327 (591)
T ss_dssp HHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS--EEEECTTS
T ss_pred HHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe--EEEEechh
Confidence 01344455554432 2678999999999999999999999999999999999999999999999987654 89999999
Q ss_pred ccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEE
Q 044036 595 GLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVF 637 (875)
Q Consensus 595 g~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~Vy 637 (875)
|+|||+++++.||+||+++++..+.|++||++|.|+...+.++
T Consensus 328 ~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999999999999999999999999999999999987665544
No 31
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=6e-26 Score=286.74 Aligned_cols=307 Identities=15% Similarity=0.181 Sum_probs=220.6
Q ss_pred hhcccHHHHHHHHHHHHHhhCCC--CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-h
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKH--GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-V 210 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~--ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-L 210 (875)
...++|||.+++..++.....+. ++|++.+||+|||.+++..+..... ..+++|||||+. |
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~----------------~g~~vlvlvPt~~L 664 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD----------------NHKQVAVLVPTTLL 664 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT----------------TTCEEEEECSSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH----------------hCCeEEEEechHHH
Confidence 45679999999999998777665 7899999999999998755544321 345899999975 7
Q ss_pred HHHHHHHHHHhcC---CcEEEEeCCCh----hHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcc
Q 044036 211 IQNWEIEFSRWST---FNVSIYHGPNR----DMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 211 l~qW~~E~~k~~~---~~v~v~~G~~r----~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~ 283 (875)
..||.++|.+++. .++..++|... ......+..+..+|+|+|+..+... +.-.++++||+||||++.
T Consensus 665 a~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g--- 738 (1151)
T 2eyq_A 665 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFG--- 738 (1151)
T ss_dssp HHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSC---
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC---ccccccceEEEechHhcC---
Confidence 8899999998764 67788877532 2344556667799999999887643 233478999999999974
Q ss_pred cHHHHHHHhccc-cceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHH
Q 044036 284 SKLYMACLELKT-RNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362 (875)
Q Consensus 284 S~~~kal~~l~~-~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L 362 (875)
......+..+.. .++++|||||+.+.+..... .+
T Consensus 739 ~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~---~~------------------------------------------ 773 (1151)
T 2eyq_A 739 VRHKERIKAMRANVDILTLTATPIPRTLNMAMS---GM------------------------------------------ 773 (1151)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHT---TT------------------------------------------
T ss_pred hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHh---cC------------------------------------------
Confidence 344555666644 56899999997542211100 00
Q ss_pred HHHHHHHHHhhchhHHhhccCCCce-eEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCC
Q 044036 363 VAVLRKYLLRRTKEETIGHLMMGKE-DNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLD 441 (875)
Q Consensus 363 ~~~L~~~~lRR~k~~vi~~~lp~k~-e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (875)
+.. .++. ..|... ....++
T Consensus 774 ---------~~~--~~i~-~~~~~r~~i~~~~------------------------------------------------ 793 (1151)
T 2eyq_A 774 ---------RDL--SIIA-TPPARRLAVKTFV------------------------------------------------ 793 (1151)
T ss_dssp ---------SEE--EECC-CCCCBCBCEEEEE------------------------------------------------
T ss_pred ---------CCc--eEEe-cCCCCccccEEEE------------------------------------------------
Confidence 000 0000 000000 000000
Q ss_pred CCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHH
Q 044036 442 GCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRAL 521 (875)
Q Consensus 442 ~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L 521 (875)
....+....
T Consensus 794 -----------------------------------------------------------------------~~~~~~~i~ 802 (1151)
T 2eyq_A 794 -----------------------------------------------------------------------REYDSMVVR 802 (1151)
T ss_dssp -----------------------------------------------------------------------EECCHHHHH
T ss_pred -----------------------------------------------------------------------ecCCHHHHH
Confidence 000122223
Q ss_pred HHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccC
Q 044036 522 EKLMYSWASKGDKILLFSYSVRMLDILEKFLIRK--GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLN 599 (875)
Q Consensus 522 ~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~--g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLN 599 (875)
..++.. ...|.+++||++.+..++.+...|... ++.+..++|.++..+|.+++++|+++... +||+|.++++|||
T Consensus 803 ~~il~~-l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~--VLVaT~v~e~GiD 879 (1151)
T 2eyq_A 803 EAILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN--VLVCTTIIETGID 879 (1151)
T ss_dssp HHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC--EEEESSTTGGGSC
T ss_pred HHHHHH-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc--EEEECCcceeeec
Confidence 333333 346889999999999999999999987 89999999999999999999999986543 8999999999999
Q ss_pred CCCCCEEEEcCC-CCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 600 LVSANRVVIFDP-NWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 600 L~~An~VI~~D~-~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
++++|+||++++ .|++..+.|++||++|.|+.. ++|.++...
T Consensus 880 ip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 880 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHP 922 (1151)
T ss_dssp CTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCG
T ss_pred ccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECCc
Confidence 999999999999 699999999999999998654 456666554
No 32
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=8.7e-26 Score=268.45 Aligned_cols=329 Identities=16% Similarity=0.187 Sum_probs=213.4
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.|+|||.+++..++. ..+.++|+..+||+|||++++..+...+..... ......++|||||. .|+.||
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~---------~~~~~~~~lvl~Ptr~La~Q~ 111 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------DSQYMVKAVIVAPTRDLALQI 111 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT---------SSTTSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc---------cccCCCeEEEEcchHHHHHHH
Confidence 589999999988762 136678999999999999866655544322210 01234579999996 788999
Q ss_pred HHHHHHhcC-------CcEEEEeC-CChhHHHHHHHhCCceEEEeecccccccccc---cccccccEEEEcCCccccCcc
Q 044036 215 EIEFSRWST-------FNVSIYHG-PNRDMILEKLEACGVEVLITSFDSYRIHGSI---LSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 215 ~~E~~k~~~-------~~v~v~~G-~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~---l~~~~w~~VIiDEAH~ikn~~ 283 (875)
.+++.+++. ..+....| .........+...+.+|+|+|++.+...... ...-.+++||+||||++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~g 191 (579)
T 3sqw_A 112 EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG 191 (579)
T ss_dssp HHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCC
Confidence 999998742 44555554 4455555666666789999999988643221 122357899999999987643
Q ss_pred --cHHHHHHHhc---c-----ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHH
Q 044036 284 --SKLYMACLEL---K-----TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIR 353 (875)
Q Consensus 284 --S~~~kal~~l---~-----~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~ 353 (875)
......+..+ . ....++||||+-. ...+
T Consensus 192 f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~----------------------------------------- 229 (579)
T 3sqw_A 192 FRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQK----------------------------------------- 229 (579)
T ss_dssp THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH-----------------------------------------
T ss_pred CHHHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHH-----------------------------------------
Confidence 1222222222 1 3468999999631 1110
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHH
Q 044036 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVEC 433 (875)
Q Consensus 354 ~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 433 (875)
.+...+... ..+........ .+
T Consensus 230 ------------------------~~~~~l~~~-~~~~~~~~~~~---------------------~~------------ 251 (579)
T 3sqw_A 230 ------------------------LANNIMNKK-ECLFLDTVDKN---------------------EP------------ 251 (579)
T ss_dssp ------------------------HTTTTCCSS-EEEEEESSCSS---------------------SC------------
T ss_pred ------------------------HHHHHcCCC-ceEEEeecCcc---------------------cc------------
Confidence 000111110 01110000000 00
Q ss_pred HhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcc
Q 044036 434 CKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVK 513 (875)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (875)
.... . ..+..... ...
T Consensus 252 -------~~~~--~--------------i~~~~~~~-----------------------------------------~~~ 267 (579)
T 3sqw_A 252 -------EAHE--R--------------IDQSVVIS-----------------------------------------EKF 267 (579)
T ss_dssp -------SSCT--T--------------EEEEEEEE-----------------------------------------SST
T ss_pred -------cccc--c--------------cceEEEEe-----------------------------------------cch
Confidence 0000 0 00000000 000
Q ss_pred cCchHHHHHHHHHHhh--cCCCeEEEEecchhHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEE
Q 044036 514 SCGKMRALEKLMYSWA--SKGDKILLFSYSVRMLDILEKFLIRK---GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFL 588 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~--~~g~KVLIFs~~~~~ld~L~~~L~~~---g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~L 588 (875)
...+...+..++..+. ..+.++|||+.+...++.+...|... |+.+..++|.+++.+|..+++.|+++.. -+|
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~--~vL 345 (579)
T 3sqw_A 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES--GIL 345 (579)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS--EEE
T ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCC--eEE
Confidence 0012222333333222 46789999999999999999999887 9999999999999999999999998654 389
Q ss_pred EecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 589 ISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 589 iSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
|+|+++++|||++++++||+||+|+++..+.|++||++|.|+...+ +.|++..
T Consensus 346 VaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~~~~~ 398 (579)
T 3sqw_A 346 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLFICKD 398 (579)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEEEEGG
T ss_pred EEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceE--EEEEccc
Confidence 9999999999999999999999999999999999999999976544 4455554
No 33
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=1.5e-25 Score=265.67 Aligned_cols=328 Identities=18% Similarity=0.207 Sum_probs=211.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.|+|||.+++..++. ..++++|+..+||+|||++++..+...+..... ......++|||+|. .|+.||
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~---------~~~~~~~~lil~Ptr~La~Q~ 162 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------DSQYMVKAVIVAPTRDLALQI 162 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT---------SSTTSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccc---------cccCCeeEEEEcCcHHHHHHH
Confidence 599999999988762 135678999999999999876665554322210 01234579999995 788999
Q ss_pred HHHHHHhcC-------CcEEEEeCC-ChhHHHHHHHhCCceEEEeecccccccccc---cccccccEEEEcCCccccCcc
Q 044036 215 EIEFSRWST-------FNVSIYHGP-NRDMILEKLEACGVEVLITSFDSYRIHGSI---LSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 215 ~~E~~k~~~-------~~v~v~~G~-~r~~~~~~~~~~~~~VvItTy~~l~~~~~~---l~~~~w~~VIiDEAH~ikn~~ 283 (875)
.+++.++.. ..+..+.|. ........+...+.+|+|+|++.+...... ...-.+++||+||||++....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~ 242 (563)
T 3i5x_A 163 EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG 242 (563)
T ss_dssp HHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccc
Confidence 999998632 345555554 445555556566789999999988643221 112347899999999986543
Q ss_pred --cHHHHHHHhc---c-----ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHH
Q 044036 284 --SKLYMACLEL---K-----TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIR 353 (875)
Q Consensus 284 --S~~~kal~~l---~-----~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~ 353 (875)
......+..+ . ....++||||+-. ...+ +
T Consensus 243 f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~------------------------------------- 281 (563)
T 3i5x_A 243 FRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQK---L------------------------------------- 281 (563)
T ss_dssp THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---H-------------------------------------
T ss_pred hHHHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHH---H-------------------------------------
Confidence 1122222222 1 3458999999731 1111 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHH
Q 044036 354 IADERKQHLVAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVEC 433 (875)
Q Consensus 354 ~~~~~~~~L~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 433 (875)
+...+... .. +++..... ..+
T Consensus 282 -------------------------~~~~~~~~-~~-~~~~~~~~--------------------~~~------------ 302 (563)
T 3i5x_A 282 -------------------------ANNIMNKK-EC-LFLDTVDK--------------------NEP------------ 302 (563)
T ss_dssp -------------------------TTTTCCSS-EE-EEEESSCS--------------------SSC------------
T ss_pred -------------------------HHHhcCCC-ce-EEEeccCC--------------------CCc------------
Confidence 00001000 01 11100000 000
Q ss_pred HhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcc
Q 044036 434 CKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVK 513 (875)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (875)
.... . + .+..... ..
T Consensus 303 -------~~~~-----~----------~-~~~~~~~------------------------------------------~~ 317 (563)
T 3i5x_A 303 -------EAHE-----R----------I-DQSVVIS------------------------------------------EK 317 (563)
T ss_dssp -------SSCT-----T----------E-EEEEEEE------------------------------------------SS
T ss_pred -------cccc-----c----------C-ceEEEEC------------------------------------------ch
Confidence 0000 0 0 0000000 00
Q ss_pred cCch-HHHHHHHHHHh--hcCCCeEEEEecchhHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHhcCCCCceEE
Q 044036 514 SCGK-MRALEKLMYSW--ASKGDKILLFSYSVRMLDILEKFLIRK---GYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVF 587 (875)
Q Consensus 514 ~s~K-l~~L~~LL~~~--~~~g~KVLIFs~~~~~ld~L~~~L~~~---g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~ 587 (875)
...+ ...+..++..+ ...+.++|||+++...++.+...|... |+.+..++|++++.+|..+++.|+++.. -+
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~--~v 395 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES--GI 395 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS--EE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCC--CE
Confidence 0011 11222222222 246789999999999999999999886 9999999999999999999999998654 38
Q ss_pred EEecCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 588 LISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 588 LiSt~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
||+|+++++|||+++++.||+||+++++..+.|++||++|.|+... ++.|++..
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~--~i~~~~~~ 449 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS--SVLFICKD 449 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE--EEEEEEGG
T ss_pred EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCce--EEEEEchh
Confidence 9999999999999999999999999999999999999999997544 45556654
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.4e-26 Score=270.84 Aligned_cols=313 Identities=15% Similarity=0.158 Sum_probs=188.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++.. .+.++|+..+||+|||++++..+...+... ...+++|||||. .|+.||
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~-------------~~~~~vLvl~P~~~L~~Q~ 205 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDAS-------------VPKPQAICLAPSRELARQI 205 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTT-------------CCSCCEEEECSCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhC-------------CCCceEEEEECcHHHHHHH
Confidence 6899999999887652 237889999999999999776666554321 235689999996 589999
Q ss_pred HHHHHHhcC-C--cEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc---cHH
Q 044036 215 EIEFSRWST-F--NVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK---SKL 286 (875)
Q Consensus 215 ~~E~~k~~~-~--~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~---S~~ 286 (875)
.+++.+++. . .+....+.... .....+.+|+|+|++.+.... ..+....+++||+||||++.... ...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~ 281 (508)
T 3fho_A 206 MDVVTEMGKYTEVKTAFGIKDSVP----KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQS 281 (508)
T ss_dssp HHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHH
T ss_pred HHHHHHhCCccCeeEEEEeCCccc----ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHH
Confidence 999999876 2 22322222111 111236789999999875432 22334568999999999986521 222
Q ss_pred HHHHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHH
Q 044036 287 YMACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAV 365 (875)
Q Consensus 287 ~kal~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~ 365 (875)
...+..+. ....++|||||- +...++.. .+.
T Consensus 282 ~~i~~~~~~~~~~i~lSAT~~-~~~~~~~~------------------~~~----------------------------- 313 (508)
T 3fho_A 282 MRIKHLLPRNTQIVLFSATFS-ERVEKYAE------------------RFA----------------------------- 313 (508)
T ss_dssp HHHHHHSCTTCEEEEEESCCS-THHHHHHH------------------HHS-----------------------------
T ss_pred HHHHHhCCcCCeEEEEeCCCC-HHHHHHHH------------------Hhc-----------------------------
Confidence 23333343 445699999973 11111110 000
Q ss_pred HHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCC
Q 044036 366 LRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDS 445 (875)
Q Consensus 366 L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (875)
+.. ..+...-.... .. .
T Consensus 314 ------------------~~~--~~i~~~~~~~~-------~~------------------------------~------ 330 (508)
T 3fho_A 314 ------------------PNA--NEIRLKTEELS-------VE------------------------------G------ 330 (508)
T ss_dssp ------------------TTC--EEECCCCCC-----------------------------------------C------
T ss_pred ------------------CCC--eEEEeccccCC-------cc------------------------------c------
Confidence 000 00000000000 00 0
Q ss_pred CCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHH
Q 044036 446 CPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLM 525 (875)
Q Consensus 446 ~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL 525 (875)
..+... .......|...+..++
T Consensus 331 ----------------~~~~~~------------------------------------------~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 331 ----------------IKQLYM------------------------------------------DCQSEEHKYNVLVELY 352 (508)
T ss_dssp ----------------CCCEEE------------------------------------------EC--CHHHHHHHHHHH
T ss_pred ----------------ceEEEE------------------------------------------ECCchHHHHHHHHHHH
Confidence 000000 0001123566666666
Q ss_pred HHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCE
Q 044036 526 YSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANR 605 (875)
Q Consensus 526 ~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~ 605 (875)
... .+.++|||+++...++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|+++++|+|+++++.
T Consensus 353 ~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~--VLVaT~~l~~GiDip~v~~ 428 (508)
T 3fho_A 353 GLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK--VLVTTNVIARGIDVSQVNL 428 (508)
T ss_dssp C-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC--CCEECC-----CCCTTCCE
T ss_pred Hhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe--EEEeCChhhcCCCccCCCE
Confidence 553 567999999999999999999999999999999999999999999999987554 8999999999999999999
Q ss_pred EEEcCCC------CCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 606 VVIFDPN------WNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 606 VI~~D~~------WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
||+||++ +++..+.|++||++|.|+...+.+ |+..
T Consensus 429 VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~--l~~~ 469 (508)
T 3fho_A 429 VVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSIN--FVHD 469 (508)
T ss_dssp EEC----CC-----CTHHHHHTTSCCC-----CEEEE--EECT
T ss_pred EEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEE--EEeC
Confidence 9999999 789999999999999997665544 4543
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.2e-24 Score=267.24 Aligned_cols=354 Identities=17% Similarity=0.181 Sum_probs=220.5
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~ 212 (875)
...|+|||.+++..+.. +.++|++.+||+|||+++...+...+. ..+++||++|. .|..
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~----------------~g~rvL~l~PtkaLa~ 143 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK----------------NKQRVIYTSPIKALSN 143 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH----------------TTCEEEEEESSHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc----------------cCCeEEEECChHHHHH
Confidence 34699999999999876 778999999999999998665555432 34689999996 7899
Q ss_pred HHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHHHH
Q 044036 213 NWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKLYM 288 (875)
Q Consensus 213 qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~~k 288 (875)
||.++|.++++ ++.+++|..... .+.+|+|+|++.+.... ......++++||+||||++.+.. .....
T Consensus 144 Q~~~~l~~~~~-~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~ 215 (1010)
T 2xgj_A 144 QKYRELLAEFG-DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEE 215 (1010)
T ss_dssp HHHHHHHHHHS-CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHH
T ss_pred HHHHHHHHHhC-CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHH
Confidence 99999999887 788888875432 24689999999886432 12223468999999999997753 23334
Q ss_pred HHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 044036 289 ACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLR 367 (875)
Q Consensus 289 al~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~ 367 (875)
.+..+. ..+.++||||+ .| ..++...+.-+ ...+..
T Consensus 216 il~~l~~~~~il~LSATi-~n-~~e~a~~l~~~--------------~~~~~~--------------------------- 252 (1010)
T 2xgj_A 216 TIILLPDKVRYVFLSATI-PN-AMEFAEWICKI--------------HSQPCH--------------------------- 252 (1010)
T ss_dssp HHHHSCTTCEEEEEECCC-TT-HHHHHHHHHHH--------------HTSCEE---------------------------
T ss_pred HHHhcCCCCeEEEEcCCC-CC-HHHHHHHHHhh--------------cCCCeE---------------------------
Confidence 445553 45779999995 22 33322111100 000000
Q ss_pred HHHHhhchhHHhhccCCCceeEEEEecC--------C---HHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhh
Q 044036 368 KYLLRRTKEETIGHLMMGKEDNVVFCTM--------S---DLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKR 436 (875)
Q Consensus 368 ~~~lRR~k~~vi~~~lp~k~e~vv~~~l--------t---~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 436 (875)
.+....-|......++..- . ......|...+.
T Consensus 253 ---------vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 295 (1010)
T 2xgj_A 253 ---------IVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA---------------------------- 295 (1010)
T ss_dssp ---------EEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH----------------------------
T ss_pred ---------EEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHH----------------------------
Confidence 0000000111111111100 0 000000000000
Q ss_pred ccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCc
Q 044036 437 LDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCG 516 (875)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 516 (875)
.+.. ...+.... . ...+....... .+........
T Consensus 296 -----------------------~l~~-------~~~~~~~~-----~----------~~~g~~~~~~k-~~~~~~~~~~ 329 (1010)
T 2xgj_A 296 -----------------------SISN-------QIGDDPNS-----T----------DSRGKKGQTYK-GGSAKGDAKG 329 (1010)
T ss_dssp -----------------------TCC-----------------------------------------------------C
T ss_pred -----------------------HHhh-------hhcccccc-----c----------ccccccccccc-cccccccchH
Confidence 0000 00000000 0 00000000000 0000000012
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCc--------------------------------------
Q 044036 517 KMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYS-------------------------------------- 558 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~-------------------------------------- 558 (875)
++..|...+.. ..+.++|||+.+...++.+...|...++.
T Consensus 330 ~l~~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 407 (1010)
T 2xgj_A 330 DIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 407 (1010)
T ss_dssp HHHHHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhC
Confidence 33334444432 24569999999999999998888764442
Q ss_pred -EEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEE----cCC----CCCchhHHHhhhcccccC
Q 044036 559 -FSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI----FDP----NWNPAQDLQAQDRSFRFG 629 (875)
Q Consensus 559 -~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~----~D~----~WNp~~~~QaigR~~RiG 629 (875)
+..++|+++..+|..+++.|+++.-. +|++|.++++|||+++++.||. ||. +|+|..+.|++||++|.|
T Consensus 408 gI~~~Hggl~~~eR~~ve~~F~~G~ik--VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G 485 (1010)
T 2xgj_A 408 GIGIHHSGLLPILKEVIEILFQEGFLK--VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 485 (1010)
T ss_dssp TEEEESTTSCHHHHHHHHHHHHTTCCS--EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTT
T ss_pred CeeEECCCCCHHHHHHHHHHHhcCCCc--EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCC
Confidence 78899999999999999999987544 8999999999999999999999 999 999999999999999999
Q ss_pred CcceEEEEEEeeCCCH
Q 044036 630 QKRHVIVFRLLSAGSL 645 (875)
Q Consensus 630 Q~k~V~VyrLi~~gTi 645 (875)
+.....+|.|+..+.-
T Consensus 486 ~d~~G~vi~l~~~~~e 501 (1010)
T 2xgj_A 486 LDDRGIVIMMIDEKME 501 (1010)
T ss_dssp TCSSEEEEEEECSCCC
T ss_pred CCCceEEEEEECCCCC
Confidence 9888999999987643
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.92 E-value=1.2e-25 Score=271.83 Aligned_cols=303 Identities=16% Similarity=0.221 Sum_probs=209.2
Q ss_pred hhcccHHHHHHHHHHHHHhhCC--CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-ch
Q 044036 134 NCRLLEHQREGVKFLYKLYKNK--HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SV 210 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~--~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sL 210 (875)
...|+|+|.+++..+......+ .++|+..+||+|||++++..+...+. ....+||+||. .|
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~----------------~g~qvlvlaPtr~L 429 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE----------------AGFQTAFMVPTSIL 429 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH----------------HTSCEEEECSCHHH
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH----------------cCCeEEEEeCcHHH
Confidence 3479999999999998866554 48899999999999998877665532 24679999997 67
Q ss_pred HHHHHHHHHHhcC---CcEEEEeCCChh----HHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcc
Q 044036 211 IQNWEIEFSRWST---FNVSIYHGPNRD----MILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK 283 (875)
Q Consensus 211 l~qW~~E~~k~~~---~~v~v~~G~~r~----~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~ 283 (875)
..||.+++.+|+. .++..++|.... .....+..+..+|+|+|++.+... +.-.++++||+||+|++....
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH
Confidence 8999999999974 788889987543 234555667799999999887542 233467999999999983321
Q ss_pred cHHHHHHHhc-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHH
Q 044036 284 SKLYMACLEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362 (875)
Q Consensus 284 S~~~kal~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L 362 (875)
...+... ...+.++|||||+.+.+...+ +..
T Consensus 507 ---r~~l~~~~~~~~vL~mSATp~p~tl~~~~--------------------~g~------------------------- 538 (780)
T 1gm5_A 507 ---REALMNKGKMVDTLVMSATPIPRSMALAF--------------------YGD------------------------- 538 (780)
T ss_dssp ----CCCCSSSSCCCEEEEESSCCCHHHHHHH--------------------TCC-------------------------
T ss_pred ---HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--------------------hCC-------------------------
Confidence 1111111 356789999999753211100 000
Q ss_pred HHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCC
Q 044036 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDG 442 (875)
Q Consensus 363 ~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (875)
....++...++.......+
T Consensus 539 -----------~~~s~i~~~p~~r~~i~~~-------------------------------------------------- 557 (780)
T 1gm5_A 539 -----------LDVTVIDEMPPGRKEVQTM-------------------------------------------------- 557 (780)
T ss_dssp -----------SSCEEECCCCSSCCCCEEC--------------------------------------------------
T ss_pred -----------cceeeeeccCCCCcceEEE--------------------------------------------------
Confidence 0000111111000000000
Q ss_pred CCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHH
Q 044036 443 CDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALE 522 (875)
Q Consensus 443 ~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~ 522 (875)
.....+...+.
T Consensus 558 ---------------------------------------------------------------------~~~~~~~~~l~ 568 (780)
T 1gm5_A 558 ---------------------------------------------------------------------LVPMDRVNEVY 568 (780)
T ss_dssp ---------------------------------------------------------------------CCCSSTHHHHH
T ss_pred ---------------------------------------------------------------------EeccchHHHHH
Confidence 00001233344
Q ss_pred HHHHHhhcCCCeEEEEecch--------hHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEec
Q 044036 523 KLMYSWASKGDKILLFSYSV--------RMLDILEKFLIR---KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIST 591 (875)
Q Consensus 523 ~LL~~~~~~g~KVLIFs~~~--------~~ld~L~~~L~~---~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt 591 (875)
+.+.+....+.+++|||+.+ ..++.+...|.. .++.+..+||.++..+|.+++++|+++... +||+|
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~--ILVaT 646 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD--ILVST 646 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS--BCCCS
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe--EEEEC
Confidence 55555556788888888755 345667777776 478899999999999999999999987544 89999
Q ss_pred CCcccccCCCCCCEEEEcCCC-CCchhHHHhhhcccccCCcceEE
Q 044036 592 RAGGLGLNLVSANRVVIFDPN-WNPAQDLQAQDRSFRFGQKRHVI 635 (875)
Q Consensus 592 ~agg~GLNL~~An~VI~~D~~-WNp~~~~QaigR~~RiGQ~k~V~ 635 (875)
+++++|+|+++++.||++|++ |+.+.+.|++||++|.|+...+.
T Consensus 647 ~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~i 691 (780)
T 1gm5_A 647 TVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCF 691 (780)
T ss_dssp SCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEE
T ss_pred CCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEE
Confidence 999999999999999999998 57899999999999999876554
No 37
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.92 E-value=1.3e-25 Score=260.71 Aligned_cols=315 Identities=14% Similarity=0.174 Sum_probs=104.7
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..++|+|..++..++. ..+...|+..+||+|||++++..+...+.. ....+++|||+|. .|..|
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~-------------~~~~~~~lil~Pt~~La~Q 177 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------------ANKYPQCLCLSPTYELALQ 177 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCT-------------TSCSCCEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhh-------------cCCCCcEEEEeChHHHHHH
Confidence 3688999999998765 123678999999999999976655544322 1234579999996 57888
Q ss_pred HHHHHHHhcC----CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc---cccccccccEEEEcCCccccCccc--
Q 044036 214 WEIEFSRWST----FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG---SILSEVNWEIVIVDEAHRLKNEKS-- 284 (875)
Q Consensus 214 W~~E~~k~~~----~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~---~~l~~~~w~~VIiDEAH~ikn~~S-- 284 (875)
|.+.+.++.. +.+....|....... ...+.+|+|+|++.+.... ..+...++++||+||||++.....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~ 254 (479)
T 3fmp_B 178 TGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQ 254 (479)
T ss_dssp HHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHH
T ss_pred HHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcH
Confidence 8777776643 566666664322110 1234589999999886433 233335789999999999854222
Q ss_pred HHHHHHHh-c-cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHH
Q 044036 285 KLYMACLE-L-KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHL 362 (875)
Q Consensus 285 ~~~kal~~-l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L 362 (875)
.....+.. + .....+++||||-. +++.+...
T Consensus 255 ~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~------------------------------------------- 287 (479)
T 3fmp_B 255 DQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQK------------------------------------------- 287 (479)
T ss_dssp HHHHHHHTTSCTTSEEEEEESCCCH----HHHHHHHH-------------------------------------------
T ss_pred HHHHHHHhhCCccceEEEEeCCCCH----HHHHHHHH-------------------------------------------
Confidence 22222333 2 34567999999831 11111100
Q ss_pred HHHHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCC
Q 044036 363 VAVLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDG 442 (875)
Q Consensus 363 ~~~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (875)
.++. ...+... ...... ..+..
T Consensus 288 -------------------~~~~--~~~i~~~--~~~~~~-~~~~~---------------------------------- 309 (479)
T 3fmp_B 288 -------------------VVPD--PNVIKLK--REEETL-DTIKQ---------------------------------- 309 (479)
T ss_dssp -------------------HSSS--EEEEEEC------------------------------------------------
T ss_pred -------------------HcCC--CeEEecc--ccccCc-CCceE----------------------------------
Confidence 0110 0111111 100000 00000
Q ss_pred CCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHH
Q 044036 443 CDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALE 522 (875)
Q Consensus 443 ~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~ 522 (875)
. .... .....|...|.
T Consensus 310 ------------------~----~~~~------------------------------------------~~~~~~~~~l~ 325 (479)
T 3fmp_B 310 ------------------Y----YVLC------------------------------------------SSRDEKFQALC 325 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------E----EEEe------------------------------------------CCHHHHHHHHH
Confidence 0 0000 00012444455
Q ss_pred HHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCC
Q 044036 523 KLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVS 602 (875)
Q Consensus 523 ~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~ 602 (875)
.++... .+.++||||++...++.+...|...|+.+..++|.++..+|..+++.|+++... +||+|+++++|||+++
T Consensus 326 ~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~--iLv~T~~~~~GlDip~ 401 (479)
T 3fmp_B 326 NLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK--VLVTTNVCARGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc--EEEEccccccCCcccc
Confidence 555443 456899999999999999999999999999999999999999999999987543 8999999999999999
Q ss_pred CCEEEEcCCCCCc------hhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 603 ANRVVIFDPNWNP------AQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 603 An~VI~~D~~WNp------~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
++.||+||+||++ ..+.|++||++|.|+...+ +.|+..
T Consensus 402 v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~--i~~~~~ 445 (479)
T 3fmp_B 402 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS 445 (479)
T ss_dssp ----------------------------------------------
T ss_pred CCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceE--EEEEcC
Confidence 9999999999876 6899999999999975544 444543
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.9e-23 Score=260.82 Aligned_cols=357 Identities=15% Similarity=0.146 Sum_probs=219.3
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~ 212 (875)
...|+|||.+++..+. .+.++|++.+||+|||+++...+...+. ..+++||++|. .|..
T Consensus 182 ~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~----------------~g~rvlvl~PtraLa~ 241 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLK----------------NKQRVIYTSPIKALSN 241 (1108)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHH----------------TTCEEEEEESSHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHh----------------cCCeEEEEcCcHHHHH
Confidence 4479999999998764 4788999999999999998776665532 35679999996 6889
Q ss_pred HHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc--ccccccccEEEEcCCccccCcc--cHHHH
Q 044036 213 NWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS--ILSEVNWEIVIVDEAHRLKNEK--SKLYM 288 (875)
Q Consensus 213 qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l~~~~w~~VIiDEAH~ikn~~--S~~~k 288 (875)
||.++|.+++. .+.+++|.... ..+.+|+|+|++.+..... .....++.+||+||||++.... .....
T Consensus 242 Q~~~~l~~~~~-~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ 313 (1108)
T 3l9o_A 242 QKYRELLAEFG-DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEE 313 (1108)
T ss_dssp HHHHHHHHHTS-SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHH
T ss_pred HHHHHHHHHhC-CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHH
Confidence 99999999887 78888887542 2357899999998764321 1112367899999999997642 22333
Q ss_pred HHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 044036 289 ACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLR 367 (875)
Q Consensus 289 al~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~ 367 (875)
.+..+. ..+.++|||| +.|. .++...+..+... |...
T Consensus 314 ii~~l~~~~qvl~lSAT-ipn~-~e~a~~l~~~~~~--------------~~~v-------------------------- 351 (1108)
T 3l9o_A 314 TIILLPDKVRYVFLSAT-IPNA-MEFAEWICKIHSQ--------------PCHI-------------------------- 351 (1108)
T ss_dssp HHHHSCTTSEEEEEECS-CSSC-HHHHHHHHHHTCS--------------CEEE--------------------------
T ss_pred HHHhcCCCceEEEEcCC-CCCH-HHHHHHHHhhcCC--------------CeEE--------------------------
Confidence 444453 4567999999 4443 3332222211110 0000
Q ss_pred HHHHhhchhHHhhccCCCceeEEEE-----------ecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhh
Q 044036 368 KYLLRRTKEETIGHLMMGKEDNVVF-----------CTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKR 436 (875)
Q Consensus 368 ~~~lRR~k~~vi~~~lp~k~e~vv~-----------~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 436 (875)
+....-|....+.++ -.........|...+.... ..
T Consensus 352 ----------i~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~-----~~------------------ 398 (1108)
T 3l9o_A 352 ----------VYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS-----NQ------------------ 398 (1108)
T ss_dssp ----------EEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--------------------------
T ss_pred ----------EecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHH-----hh------------------
Confidence 000000000011111 1111111111211111000 00
Q ss_pred ccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCc
Q 044036 437 LDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCG 516 (875)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 516 (875)
. ...+...... + .....+... .....
T Consensus 399 ----~--------------------~~~~~~~~~~--------------------------~--~~~~~~~~~--~~~~~ 424 (1108)
T 3l9o_A 399 ----I--------------------GDDPNSTDSR--------------------------G--KKGQTYKGG--SAKGD 424 (1108)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----h--------------------cccccccccc--------------------------c--ccccccccc--ccccc
Confidence 0 0000000000 0 000000000 00000
Q ss_pred hHHHHHHHHHHhhc-CCCeEEEEecchhHHHHHHHHHHHcCCc-------------------------------------
Q 044036 517 KMRALEKLMYSWAS-KGDKILLFSYSVRMLDILEKFLIRKGYS------------------------------------- 558 (875)
Q Consensus 517 Kl~~L~~LL~~~~~-~g~KVLIFs~~~~~ld~L~~~L~~~g~~------------------------------------- 558 (875)
....+..++..+.. .+.++|||+.+...++.+...|...|+.
T Consensus 425 ~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 504 (1108)
T 3l9o_A 425 AKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLR 504 (1108)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHH
T ss_pred chhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhh
Confidence 12233444444333 4569999999999999998887543332
Q ss_pred --EEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCCCchh--------HHHhhhccccc
Q 044036 559 --FSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQ--------DLQAQDRSFRF 628 (875)
Q Consensus 559 --~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~WNp~~--------~~QaigR~~Ri 628 (875)
+..++|++++.+|..+++.|.++... +|++|.++++|||+++++.||.++.+|++.. +.|++||++|.
T Consensus 505 ~gV~~~Hg~l~~~~R~~v~~~F~~G~ik--VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~ 582 (1108)
T 3l9o_A 505 RGIGIHHSGLLPILKEVIEILFQEGFLK--VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRR 582 (1108)
T ss_dssp HTEEEECSCSCHHHHHHHHHHHHHTCCC--EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCS
T ss_pred cCeeeecCCCCHHHHHHHHHHHhCCCCe--EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCC
Confidence 78899999999999999999987554 8999999999999999999999998887765 99999999999
Q ss_pred CCcceEEEEEEeeCCCHHHHH
Q 044036 629 GQKRHVIVFRLLSAGSLEELV 649 (875)
Q Consensus 629 GQ~k~V~VyrLi~~gTiEE~I 649 (875)
|+.....+|.++..+..+..+
T Consensus 583 G~d~~G~~ill~~~~~~~~~~ 603 (1108)
T 3l9o_A 583 GLDDRGIVIMMIDEKMEPQVA 603 (1108)
T ss_dssp SSCSSEEEEEEECCCCCHHHH
T ss_pred CCCCceEEEEEecCCcCHHHH
Confidence 999999999999887544433
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.90 E-value=2.3e-22 Score=244.87 Aligned_cols=326 Identities=16% Similarity=0.178 Sum_probs=212.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~qW 214 (875)
.|+|+|.+++..+ +..+.++|++.+||+|||+++...+...+.. ..+++|+++|.. |..+|
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------------~~~~il~i~P~r~La~q~ 91 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLK---------------NGGKAIYVTPLRALTNEK 91 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHH---------------SCSEEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH---------------CCCeEEEEeCcHHHHHHH
Confidence 7899999999862 2347889999999999999986655543211 246899999975 88999
Q ss_pred HHHHHHhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc--ccccccccEEEEcCCccccCcc--cHHHH
Q 044036 215 EIEFSRWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS--ILSEVNWEIVIVDEAHRLKNEK--SKLYM 288 (875)
Q Consensus 215 ~~E~~k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l~~~~w~~VIiDEAH~ikn~~--S~~~k 288 (875)
.+++.++.. .++..++|....... . ....+|+|+|++.+..... ...--++++||+||||.+.+.. .....
T Consensus 92 ~~~~~~~~~~g~~v~~~~G~~~~~~~-~--~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~ 168 (715)
T 2va8_A 92 YLTFKDWELIGFKVAMTSGDYDTDDA-W--LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVES 168 (715)
T ss_dssp HHHHGGGGGGTCCEEECCSCSSSCCG-G--GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHH
T ss_pred HHHHHHhhcCCCEEEEEeCCCCCchh-h--cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHH
Confidence 999976654 678888886432110 1 1256899999987754211 1112357999999999986522 23334
Q ss_pred HHHhccccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 044036 289 ACLELKTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLRK 368 (875)
Q Consensus 289 al~~l~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~~ 368 (875)
.+..+...+.++||||+- +..++.. |+.... +...
T Consensus 169 i~~~~~~~~ii~lSATl~--n~~~~~~---~l~~~~--------------~~~~-------------------------- 203 (715)
T 2va8_A 169 VTIRAKRRNLLALSATIS--NYKQIAK---WLGAEP--------------VATN-------------------------- 203 (715)
T ss_dssp HHHHHHTSEEEEEESCCT--THHHHHH---HHTCEE--------------EECC--------------------------
T ss_pred HHHhcccCcEEEEcCCCC--CHHHHHH---HhCCCc--------------cCCC--------------------------
Confidence 455566778899999983 2343322 222100 0000
Q ss_pred HHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCCCc
Q 044036 369 YLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSCPF 448 (875)
Q Consensus 369 ~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (875)
.-+.+....+.+..... .. .
T Consensus 204 ------------~r~~~l~~~~~~~~~~~---------~~---------------------------------------~ 223 (715)
T 2va8_A 204 ------------WRPVPLIEGVIYPERKK---------KE---------------------------------------Y 223 (715)
T ss_dssp ------------CCSSCEEEEEEEECSST---------TE---------------------------------------E
T ss_pred ------------CCCCCceEEEEecCCcc---------cc---------------------------------------e
Confidence 00001111111110000 00 0
Q ss_pred cchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHHHh
Q 044036 449 CLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMYSW 528 (875)
Q Consensus 449 ~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~~~ 528 (875)
....... . ...+ .....+...+.++
T Consensus 224 -----------------~~~~~~~---------------------------~--~~~~-----~~~~~~~~~~~~~---- 248 (715)
T 2va8_A 224 -----------------NVIFKDN---------------------------T--TKKV-----HGDDAIIAYTLDS---- 248 (715)
T ss_dssp -----------------EEEETTS---------------------------C--EEEE-----ESSSHHHHHHHHH----
T ss_pred -----------------eeecCcc---------------------------h--hhhc-----ccchHHHHHHHHH----
Confidence 0000000 0 0000 0001233333333
Q ss_pred hcCCCeEEEEecchhHHHHHHHHHHHcC------------------------------------CcEEEEeCCCCHHHHH
Q 044036 529 ASKGDKILLFSYSVRMLDILEKFLIRKG------------------------------------YSFSRLDGSTPSNLRQ 572 (875)
Q Consensus 529 ~~~g~KVLIFs~~~~~ld~L~~~L~~~g------------------------------------~~~~~ldG~~~~~eR~ 572 (875)
...+.++|||++.....+.+...|.... ..+..++|+++.++|.
T Consensus 249 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~ 328 (715)
T 2va8_A 249 LSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRD 328 (715)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred HhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHH
Confidence 3478899999999999999888887542 3488999999999999
Q ss_pred HHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEE----cC-------CCCCchhHHHhhhcccccCCcceEEEEEEee
Q 044036 573 SLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI----FD-------PNWNPAQDLQAQDRSFRFGQKRHVIVFRLLS 641 (875)
Q Consensus 573 ~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~----~D-------~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~ 641 (875)
.+.+.|.++... +|++|.+++.|+|+++.+.||. || .++++..+.|++||++|.|+..+..+|+|++
T Consensus 329 ~v~~~f~~g~~~--vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 406 (715)
T 2va8_A 329 LIEEGFRQRKIK--VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVR 406 (715)
T ss_dssp HHHHHHHTTCSC--EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECS
T ss_pred HHHHHHHcCCCe--EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeC
Confidence 999999987543 8899999999999999999998 99 7999999999999999999998999999998
Q ss_pred CCC
Q 044036 642 AGS 644 (875)
Q Consensus 642 ~gT 644 (875)
...
T Consensus 407 ~~~ 409 (715)
T 2va8_A 407 DKE 409 (715)
T ss_dssp CGG
T ss_pred Cch
Confidence 765
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.89 E-value=5.3e-23 Score=249.90 Aligned_cols=320 Identities=18% Similarity=0.197 Sum_probs=214.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~qW 214 (875)
.|+|+|.+++..+.. +.++|++.+||+|||+++...+...+. ..+++|+|+|.. |+.||
T Consensus 25 ~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~----------------~~~~~l~i~P~r~La~q~ 84 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAI----------------KGGKSLYVVPLRALAGEK 84 (702)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHH----------------TTCCEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHH----------------hCCcEEEEeCcHHHHHHH
Confidence 688999999988543 789999999999999998665554321 246799999965 89999
Q ss_pred HHHHHHhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccc--cccccccEEEEcCCccccCc--ccHHHH
Q 044036 215 EIEFSRWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSI--LSEVNWEIVIVDEAHRLKNE--KSKLYM 288 (875)
Q Consensus 215 ~~E~~k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~w~~VIiDEAH~ikn~--~S~~~k 288 (875)
.++++++.. .++..++|....... .....+|+|+|++.+...... ..-.++++||+||||.+.+. ......
T Consensus 85 ~~~~~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ 161 (702)
T 2p6r_A 85 YESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEI 161 (702)
T ss_dssp HHHHTTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHH
Confidence 999977655 688888886432210 113578999999877532211 11235789999999998762 222333
Q ss_pred HHHhc----cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHH
Q 044036 289 ACLEL----KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVA 364 (875)
Q Consensus 289 al~~l----~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~ 364 (875)
.+..+ ...+.++||||+- +..++. .|+.... +...
T Consensus 162 ll~~l~~~~~~~~ii~lSATl~--n~~~~~---~~l~~~~--------------~~~~---------------------- 200 (702)
T 2p6r_A 162 LVTKMRRMNKALRVIGLSATAP--NVTEIA---EWLDADY--------------YVSD---------------------- 200 (702)
T ss_dssp HHHHHHHHCTTCEEEEEECCCT--THHHHH---HHTTCEE--------------EECC----------------------
T ss_pred HHHHHHhcCcCceEEEECCCcC--CHHHHH---HHhCCCc--------------ccCC----------------------
Confidence 33333 3567799999973 244332 2222110 0000
Q ss_pred HHHHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCC
Q 044036 365 VLRKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCD 444 (875)
Q Consensus 365 ~L~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (875)
.-+.+.... ++..- . ..
T Consensus 201 ----------------~r~~~l~~~-~~~~~-~---------~~------------------------------------ 217 (702)
T 2p6r_A 201 ----------------WRPVPLVEG-VLCEG-T---------LE------------------------------------ 217 (702)
T ss_dssp ----------------CCSSCEEEE-EECSS-E---------EE------------------------------------
T ss_pred ----------------CCCccceEE-EeeCC-e---------ee------------------------------------
Confidence 000000000 00000 0 00
Q ss_pred CCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHH
Q 044036 445 SCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKL 524 (875)
Q Consensus 445 ~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~L 524 (875)
... .... . ...-.+...+.++
T Consensus 218 ----------------------~~~-----------------------------~~~~--~------~~~~~~~~~~~~~ 238 (702)
T 2p6r_A 218 ----------------------LFD-----------------------------GAFS--T------SRRVKFEELVEEC 238 (702)
T ss_dssp ----------------------EEE-----------------------------TTEE--E------EEECCHHHHHHHH
T ss_pred ----------------------ccC-----------------------------cchh--h------hhhhhHHHHHHHH
Confidence 000 0000 0 0000133333333
Q ss_pred HHHhhcCCCeEEEEecchhHHHHHHHHHHHc------------------------------CCcEEEEeCCCCHHHHHHH
Q 044036 525 MYSWASKGDKILLFSYSVRMLDILEKFLIRK------------------------------GYSFSRLDGSTPSNLRQSL 574 (875)
Q Consensus 525 L~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~------------------------------g~~~~~ldG~~~~~eR~~~ 574 (875)
...+.++|||+++....+.+...|... ++.+..++|+++.++|..+
T Consensus 239 ----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 314 (702)
T 2p6r_A 239 ----VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVV 314 (702)
T ss_dssp ----HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHH
T ss_pred ----HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHH
Confidence 346889999999999988888877642 2357789999999999999
Q ss_pred HHHhcCCCCceEEEEecCCcccccCCCCCCEEEE----cC---CCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHH
Q 044036 575 VDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI----FD---PNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEE 647 (875)
Q Consensus 575 i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~----~D---~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE 647 (875)
.+.|.++... +|++|.+++.|+|+++.+.||. || .++++..+.|++||++|.|+.++..+|.|++....+.
T Consensus 315 ~~~f~~g~~~--vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 315 EDAFRRGNIK--VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp HHHHHTTSCC--EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred HHHHHCCCCe--EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 9999987544 8899999999999999999998 77 7899999999999999999999999999999877543
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=1.6e-22 Score=246.42 Aligned_cols=319 Identities=15% Similarity=0.127 Sum_probs=215.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHH-HHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA-AVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~-~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
.|+|||.+++..+ +..+.++|++.+||+|||+++...+. .+.. ..+++|+|+|. .|+.|
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------------~~~~~l~i~P~raLa~q 83 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILT----------------QGGKAVYIVPLKALAEE 83 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHH----------------HCSEEEEECSSGGGHHH
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHh----------------CCCEEEEEcCcHHHHHH
Confidence 6899999999862 22378899999999999999854443 3321 24689999995 78999
Q ss_pred HHHHHHHhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc--ccccccccEEEEcCCccccCc--ccHHH
Q 044036 214 WEIEFSRWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS--ILSEVNWEIVIVDEAHRLKNE--KSKLY 287 (875)
Q Consensus 214 W~~E~~k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~--~l~~~~w~~VIiDEAH~ikn~--~S~~~ 287 (875)
|.+++.++.. .++..++|....... .....+|+|+|++.+..... ...--++++||+||||.+... .....
T Consensus 84 ~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~ 160 (720)
T 2zj8_A 84 KFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLE 160 (720)
T ss_dssp HHHHTGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHH
T ss_pred HHHHHHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHH
Confidence 9999987654 788889996432211 12356899999988753221 111235789999999999752 23333
Q ss_pred HHHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHH
Q 044036 288 MACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVL 366 (875)
Q Consensus 288 kal~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L 366 (875)
..+..+. ..+.++||||+- +..++.. |+. .+...
T Consensus 161 ~ll~~l~~~~~ii~lSATl~--n~~~~~~---~l~---------------~~~~~------------------------- 195 (720)
T 2zj8_A 161 VILAHMLGKAQIIGLSATIG--NPEELAE---WLN---------------AELIV------------------------- 195 (720)
T ss_dssp HHHHHHBTTBEEEEEECCCS--CHHHHHH---HTT---------------EEEEE-------------------------
T ss_pred HHHHHhhcCCeEEEEcCCcC--CHHHHHH---HhC---------------CcccC-------------------------
Confidence 4444454 567899999973 2333322 221 10000
Q ss_pred HHHHHhhchhHHhhccCCCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhccCCCCCCCC
Q 044036 367 RKYLLRRTKEETIGHLMMGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRLDNLDGCDSC 446 (875)
Q Consensus 367 ~~~~lRR~k~~vi~~~lp~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (875)
...-|-.....++..- ...
T Consensus 196 -------------~~~rp~~l~~~~~~~~----------~~~-------------------------------------- 214 (720)
T 2zj8_A 196 -------------SDWRPVKLRRGVFYQG----------FVT-------------------------------------- 214 (720)
T ss_dssp -------------CCCCSSEEEEEEEETT----------EEE--------------------------------------
T ss_pred -------------CCCCCCcceEEEEeCC----------eee--------------------------------------
Confidence 0000000001111000 000
Q ss_pred CccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCCCCccccCCCCcccCchHHHHHHHHH
Q 044036 447 PFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNAQNESFIGLSDVKSCGKMRALEKLMY 526 (875)
Q Consensus 447 ~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~LL~ 526 (875)
... +.. .....+...+.+++
T Consensus 215 --------------------~~~-----------------------------~~~----------~~~~~~~~~~~~~~- 234 (720)
T 2zj8_A 215 --------------------WED-----------------------------GSI----------DRFSSWEELVYDAI- 234 (720)
T ss_dssp --------------------ETT-----------------------------SCE----------EECSSTTHHHHHHH-
T ss_pred --------------------ccc-----------------------------cch----------hhhhHHHHHHHHHH-
Confidence 000 000 00012333444443
Q ss_pred HhhcCCCeEEEEecchhHHHHHHHHHHHc------------------C---------------CcEEEEeCCCCHHHHHH
Q 044036 527 SWASKGDKILLFSYSVRMLDILEKFLIRK------------------G---------------YSFSRLDGSTPSNLRQS 573 (875)
Q Consensus 527 ~~~~~g~KVLIFs~~~~~ld~L~~~L~~~------------------g---------------~~~~~ldG~~~~~eR~~ 573 (875)
..+.++|||+++....+.+...|... + ..+..++|+++.++|..
T Consensus 235 ---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 311 (720)
T 2zj8_A 235 ---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVL 311 (720)
T ss_dssp ---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred ---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHH
Confidence 46789999999999998888887653 1 24889999999999999
Q ss_pred HHHHhcCCCCceEEEEecCCcccccCCCCCCEEEE----cC----CCCCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 574 LVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI----FD----PNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 574 ~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~----~D----~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
+.+.|.++... +|++|.+++.|+|+++.+.||. || .++++..+.|++||++|.|+.+...+|.|++....
T Consensus 312 v~~~f~~g~~~--vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 312 VEENFRKGIIK--AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp HHHHHHTTSSC--EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCH
T ss_pred HHHHHHCCCCe--EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccH
Confidence 99999987544 8899999999999999999998 88 68999999999999999999999999999998885
Q ss_pred HH
Q 044036 646 EE 647 (875)
Q Consensus 646 EE 647 (875)
+.
T Consensus 390 ~~ 391 (720)
T 2zj8_A 390 RE 391 (720)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.88 E-value=1.1e-21 Score=244.37 Aligned_cols=398 Identities=15% Similarity=0.101 Sum_probs=225.9
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..|+|+|.+++..+.. +..+|+..++|+|||+.+...+..+.. ..+++|||+|. .|..|
T Consensus 38 f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~----------------~g~~vlvl~PtraLa~Q 97 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR----------------NMTKTIYTSPIKALSNQ 97 (997)
T ss_dssp SCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH----------------TTCEEEEEESCGGGHHH
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh----------------cCCeEEEEeCCHHHHHH
Confidence 4689999999987655 788999999999999976655554431 34679999995 78999
Q ss_pred HHHHHHHhc-CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCc--ccHHHH
Q 044036 214 WEIEFSRWS-TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNE--KSKLYM 288 (875)
Q Consensus 214 W~~E~~k~~-~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~--~S~~~k 288 (875)
|.+++..++ +.++..++|..... ...+|+|+|++.+.... ......++++||+||||++.+. ......
T Consensus 98 ~~~~l~~~~~~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ 170 (997)
T 4a4z_A 98 KFRDFKETFDDVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEE 170 (997)
T ss_dssp HHHHHHTTC--CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHH
T ss_pred HHHHHHHHcCCCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHH
Confidence 999999987 48899999875432 34689999999886432 1222246799999999998664 333445
Q ss_pred HHHhcc-ccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 044036 289 ACLELK-TRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHGQRLTAPERFIRIADERKQHLVAVLR 367 (875)
Q Consensus 289 al~~l~-~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~L~~~L~ 367 (875)
.+..+. ....++|||||- +..+ |.+|+.......
T Consensus 171 ii~~l~~~v~iIlLSAT~~--n~~e------------------f~~~l~~~~~~~------------------------- 205 (997)
T 4a4z_A 171 VIIMLPQHVKFILLSATVP--NTYE------------------FANWIGRTKQKN------------------------- 205 (997)
T ss_dssp HHHHSCTTCEEEEEECCCT--THHH------------------HHHHHHHHHTCC-------------------------
T ss_pred HHHhcccCCCEEEEcCCCC--ChHH------------------HHHHHhcccCCc-------------------------
Confidence 555664 456699999963 2222 333322100000
Q ss_pred HHHHhhchhHHh-hccCCCceeEEEEe---------cCCHHHHHHHHHHhcchhHHHhhhccCCCCCCCCchhHHHHhhc
Q 044036 368 KYLLRRTKEETI-GHLMMGKEDNVVFC---------TMSDLQKRAYRRLLQLPEIQCLINKDLPCSCGSPLTQVECCKRL 437 (875)
Q Consensus 368 ~~~lRR~k~~vi-~~~lp~k~e~vv~~---------~lt~~q~~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 437 (875)
. .++ ....|...++.++. .........|..... .+......
T Consensus 206 -------~-~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~--------------- 256 (997)
T 4a4z_A 206 -------I-YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKE------ILNGESAK--------------- 256 (997)
T ss_dssp -------E-EEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHH------HHC--------------------
T ss_pred -------e-EEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHH------Hhhccccc---------------
Confidence 0 000 00001111111111 000011111111100 00000000
Q ss_pred cCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCC-CCccccCCCCcccCc
Q 044036 438 DNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNA-QNESFIGLSDVKSCG 516 (875)
Q Consensus 438 ~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~ 516 (875)
..+ +.+...+...............................+. ....+... ....+ .........
T Consensus 257 ------~~~------~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 322 (997)
T 4a4z_A 257 ------GAP------SKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGG-SRGAGAIGSNKRKF-FTQDGPSKK 322 (997)
T ss_dssp --------------------------------------------------------------------------CCCCTT
T ss_pred ------ccc------cccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-ccccccchh
Confidence 000 0000000000000000000000000000000000000000 00000000 00000 000011234
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCC---------------------------------------
Q 044036 517 KMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGY--------------------------------------- 557 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~--------------------------------------- 557 (875)
++..|...|... ...++|||+.+...++.+...|...|+
T Consensus 323 ~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 400 (997)
T 4a4z_A 323 TWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLER 400 (997)
T ss_dssp HHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhc
Confidence 566677776653 457999999999999999988876555
Q ss_pred cEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCCCC---------CchhHHHhhhccccc
Q 044036 558 SFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNW---------NPAQDLQAQDRSFRF 628 (875)
Q Consensus 558 ~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~~W---------Np~~~~QaigR~~Ri 628 (875)
.+..++|++++.+|..+++.|..+... +|++|.+.++|||+++ ..||+++.++ ++..+.|++||++|.
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G~~k--VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKGFIK--VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCCS--EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCc--EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccC
Confidence 578999999999999999999987654 8999999999999999 7777766655 999999999999999
Q ss_pred CCcceEEEEEEeeCCCHHHHHHHH
Q 044036 629 GQKRHVIVFRLLSAGSLEELVYTR 652 (875)
Q Consensus 629 GQ~k~V~VyrLi~~gTiEE~I~~r 652 (875)
|+.....||.+...+..++..+..
T Consensus 478 G~~~~G~vi~l~~~~~~~~~~~~~ 501 (997)
T 4a4z_A 478 GLDSTGTVIVMAYNSPLSIATFKE 501 (997)
T ss_dssp TTCSSEEEEEECCSSCCCHHHHHH
T ss_pred CCCcceEEEEecCCCcchHHHHHH
Confidence 999999999998766666555543
No 43
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=8.3e-22 Score=244.23 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=112.6
Q ss_pred hcccHHHHHHHHHHHHHhhC----------CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEE
Q 044036 135 CRLLEHQREGVKFLYKLYKN----------KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLI 204 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~----------~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LI 204 (875)
..|||||..++.+++..+.. +.+||+.+.||+|||++++.++..+ .. .....++||
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll-~~-------------~~~~~rvLv 335 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLA-TE-------------LDFIDKVFF 335 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHH-TT-------------CTTCCEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHH-Hh-------------cCCCceEEE
Confidence 46999999999999886542 3689999999999999987666433 21 113468999
Q ss_pred EcC-cchHHHHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccc---c-ccccccEEEEcCCccc
Q 044036 205 ICP-SSVIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSI---L-SEVNWEIVIVDEAHRL 279 (875)
Q Consensus 205 V~P-~sLl~qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~---l-~~~~w~~VIiDEAH~i 279 (875)
||| ..|..||.++|.+|.+.. +..+.+.......+...+.+|+|+|++++...... + ..-.+.+||+||||+.
T Consensus 336 lvpr~eL~~Q~~~~f~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs 413 (1038)
T 2w00_A 336 VVDRKDLDYQTMKEYQRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRS 413 (1038)
T ss_dssp EECGGGCCHHHHHHHHTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTT
T ss_pred EeCcHHHHHHHHHHHHHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchh
Confidence 999 678999999999987642 22334444445555556679999999998753211 1 1126799999999997
Q ss_pred cCcccHHHHHH-HhccccceEEeecCCCCC
Q 044036 280 KNEKSKLYMAC-LELKTRNRIGLTGTIMQN 308 (875)
Q Consensus 280 kn~~S~~~kal-~~l~~~~rllLTGTPiqN 308 (875)
... ..++.+ ..++...+++|||||...
T Consensus 414 ~~~--~~~~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 414 QFG--EAQKNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHH--HHHHHHHHHCSSEEEEEEESSCCCS
T ss_pred cch--HHHHHHHHhCCcccEEEEeCCcccc
Confidence 532 234444 456778899999999853
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.86 E-value=8.2e-21 Score=238.53 Aligned_cols=271 Identities=16% Similarity=0.161 Sum_probs=190.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+.|+|..++..++. ++..|+..++|+|||+.++..+...+ ...+.+|||+|. .|+.|+
T Consensus 78 ~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~----------------~~~~~~Lil~PtreLa~Q~ 137 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA----------------RKGKKSALVFPTVTLVKQT 137 (1104)
T ss_dssp CCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH----------------TTTCCEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH----------------hcCCeEEEEechHHHHHHH
Confidence 577999999987765 78899999999999997666655543 135679999996 678999
Q ss_pred HHHHHHhcC--CcEEEEeCCCh----hHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcc-----
Q 044036 215 EIEFSRWST--FNVSIYHGPNR----DMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEK----- 283 (875)
Q Consensus 215 ~~E~~k~~~--~~v~v~~G~~r----~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~----- 283 (875)
.+.+.+++. .++..++|... ......+..+.++|+|+|++.+......+...++++||+||||.+....
T Consensus 138 ~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 138 LERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchh
Confidence 999999753 68888988753 3445566666689999999998655444555578999999999875321
Q ss_pred --------cH-HHHHHHhc------------cccceEEeecCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhcchhccC
Q 044036 284 --------SK-LYMACLEL------------KTRNRIGLTGTIMQNKIMELYNLFDWVAPGSLGTREHFREFYDEPLKHG 342 (875)
Q Consensus 284 --------S~-~~kal~~l------------~~~~rllLTGTPiqN~~~El~~Ll~~l~p~~~~~~~~F~~~~~~~i~~g 342 (875)
.. ...++..+ .....+++||||....+.+.+ +..
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~--------- 272 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRD--------- 272 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHH---------
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhc---------
Confidence 11 23333333 245679999997654332110 000
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhccC-CCceeEEEEecCCHHHHHHHHHHhcchhHHHhhhccCC
Q 044036 343 QRLTAPERFIRIADERKQHLVAVLRKYLLRRTKEETIGHLM-MGKEDNVVFCTMSDLQKRAYRRLLQLPEIQCLINKDLP 421 (875)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~L~~~L~~~~lRR~k~~vi~~~l-p~k~e~vv~~~lt~~q~~~Y~~~l~~~~~~~l~~~~~~ 421 (875)
.+. -.+..... +..... .
T Consensus 273 ----------------------~l~--------i~v~~~~~~~~~i~~-~------------------------------ 291 (1104)
T 4ddu_A 273 ----------------------LLN--------FTVGRLVSVARNITH-V------------------------------ 291 (1104)
T ss_dssp ----------------------HTC--------CCCCBCCCCCCCEEE-E------------------------------
T ss_pred ----------------------cee--------EEeccCCCCcCCcee-E------------------------------
Confidence 000 00000000 000000 0
Q ss_pred CCCCCCchhHHHHhhccCCCCCCCCCccchhhHHHHHHHHhccccccCCCCCCCchhhhhhHHHHhhhcCCCccccCCCC
Q 044036 422 CSCGSPLTQVECCKRLDNLDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPRDEPDKQRKDAELASAVFGPDIDLVGGNA 501 (875)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~~nh~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 501 (875)
T Consensus 292 -------------------------------------------------------------------------------- 291 (1104)
T 4ddu_A 292 -------------------------------------------------------------------------------- 291 (1104)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEE-EEeCCCCHHHHHHHHHHhcC
Q 044036 502 QNESFIGLSDVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFS-RLDGSTPSNLRQSLVDDFNS 580 (875)
Q Consensus 502 ~~~~~~~~~~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~-~ldG~~~~~eR~~~i~~F~~ 580 (875)
...+.|...|..+|.. .+.++|||++....++.|...|...|+.+. .++| +|.+ +++|++
T Consensus 292 ----------~~~~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~ 352 (1104)
T 4ddu_A 292 ----------RISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKV 352 (1104)
T ss_dssp ----------EESCCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHH
T ss_pred ----------EEecCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHC
Confidence 0011366667777776 358999999999999999999999999998 8998 3555 999998
Q ss_pred CCCceEEEEe----cCCcccccCCCC-CCEEEEcCCCC
Q 044036 581 SPSKQVFLIS----TRAGGLGLNLVS-ANRVVIFDPNW 613 (875)
Q Consensus 581 ~~~~~v~LiS----t~agg~GLNL~~-An~VI~~D~~W 613 (875)
+... +||+ |+++++|||+++ ++.||+||+|-
T Consensus 353 G~~~--VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 353 GKIN--ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TSCS--EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCC--EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 7554 6777 999999999999 99999999998
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.82 E-value=9.4e-20 Score=228.98 Aligned_cols=145 Identities=16% Similarity=0.171 Sum_probs=105.5
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHH
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWE 215 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~ 215 (875)
+ |+|.+++.-++. ++++|+..++|+|||+.++.++..+.. ..+++|||+|. .|+.|+.
T Consensus 58 p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~~----------------~~~~~lil~PtreLa~Q~~ 116 (1054)
T 1gku_B 58 R-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL----------------KGKRCYVIFPTSLLVIQAA 116 (1054)
T ss_dssp C-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT----------------TSCCEEEEESCHHHHHHHH
T ss_pred H-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHhh----------------cCCeEEEEeccHHHHHHHH
Confidence 5 789999988765 789999999999999855555544421 35679999996 6789999
Q ss_pred HHHHHhcC---C----cEEEEeCCChhHH----HHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCccc
Q 044036 216 IEFSRWST---F----NVSIYHGPNRDMI----LEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKS 284 (875)
Q Consensus 216 ~E~~k~~~---~----~v~v~~G~~r~~~----~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S 284 (875)
+.+.+++. . ++..++|...... ...+.. .+|+|+|++.+......|. .+++||+||||++.+...
T Consensus 117 ~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~ 192 (1054)
T 1gku_B 117 ETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASK 192 (1054)
T ss_dssp HHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTH
T ss_pred HHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccc
Confidence 99998864 4 7888888754332 222222 7999999998876655544 678999999999877554
Q ss_pred HHHHHHHhc------------cccceEEeecCCC
Q 044036 285 KLYMACLEL------------KTRNRIGLTGTIM 306 (875)
Q Consensus 285 ~~~kal~~l------------~~~~rllLTGTPi 306 (875)
.....+..+ .....+++|||+-
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t 226 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTAT 226 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCC
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCC
Confidence 554555444 1244688888864
No 46
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.79 E-value=9.6e-18 Score=199.39 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=101.8
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+.+|.+++...+..+.+|||||.+....+.|...|...|+++..++|.+...+|..+...|+.+ . ++|+|+.+
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~--VlIATdmA 490 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--A--VTIATNMA 490 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--C--EEEEETTS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--e--EEEeCCcc
Confidence 3589999999987777889999999999999999999999999999999998877776555555443 2 79999999
Q ss_pred ccccCCC--------CCCEEEEcCCCCCchhHHHhhhcccccCCcceE
Q 044036 595 GLGLNLV--------SANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634 (875)
Q Consensus 595 g~GLNL~--------~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V 634 (875)
|+|+|+. +..+||.||.|-++..|.|++||++|.|..-..
T Consensus 491 gRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 491 GRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp STTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 9999999 788999999999999999999999999986544
No 47
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.78 E-value=3.3e-19 Score=192.14 Aligned_cols=162 Identities=12% Similarity=0.132 Sum_probs=122.1
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..|+|||.+++.+++. +.++||+++||+|||+++++++...+.. ..+++|||||. .|+.|
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------------~~~~~lil~Pt~~L~~q 172 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN---------------YEGKILIIVPTTALTTQ 172 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHH---------------CSSEEEEECSSHHHHHH
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHc---------------CCCeEEEEECCHHHHHH
Confidence 4799999999999877 3678999999999999998887765421 23589999996 78999
Q ss_pred HHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHH
Q 044036 214 WEIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMAC 290 (875)
Q Consensus 214 W~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal 290 (875)
|.+++.+|+. ..+..+.|...... ....+.+|+|+||+.+....... ..++++||+||||++.+. .....+
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il 246 (282)
T 1rif_A 173 MADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSII 246 (282)
T ss_dssp HHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHT
T ss_pred HHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHH
Confidence 9999999965 35555555432211 11135689999999887664422 246899999999999864 455556
Q ss_pred Hhc-cccceEEeecCCCCCCHHHHHHHHhhhCC
Q 044036 291 LEL-KTRNRIGLTGTIMQNKIMELYNLFDWVAP 322 (875)
Q Consensus 291 ~~l-~~~~rllLTGTPiqN~~~El~~Ll~~l~p 322 (875)
..+ ...++++|||||- |...+++.++.++.|
T Consensus 247 ~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 247 SGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp TTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred HHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 666 6888999999995 556778888877765
No 48
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.77 E-value=3.1e-18 Score=168.89 Aligned_cols=124 Identities=17% Similarity=0.309 Sum_probs=112.6
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
.+.|+..|.++|... .+.|+|||+++...++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|++
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~--vlv~T~~ 94 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR--YLVATDV 94 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEECGG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEECCh
Confidence 457999999999874 677999999999999999999999999999999999999999999999987544 7899999
Q ss_pred cccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 594 GGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 594 gg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
+++|+|++.+++||+||+|||+..+.|++||++|.|+...+ +.|++..
T Consensus 95 ~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~ 142 (163)
T 2hjv_A 95 AARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF 142 (163)
T ss_dssp GTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG
T ss_pred hhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH
Confidence 99999999999999999999999999999999999987654 5566654
No 49
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.77 E-value=3e-18 Score=170.64 Aligned_cols=123 Identities=21% Similarity=0.287 Sum_probs=111.8
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
.+.|+..|.++|... .+.|+|||+++...++.+...|...|+.+..++|+++..+|..+++.|+++... +||+|++
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~--vLvaT~~ 90 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR--ILVATNL 90 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEESSC
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc--EEEECCc
Confidence 356999999999875 577999999999999999999999999999999999999999999999987554 7899999
Q ss_pred cccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeC
Q 044036 594 GGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSA 642 (875)
Q Consensus 594 gg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~ 642 (875)
+++|+|++.+++||+||+|||+..+.|++||++|.|+...+ +.|++.
T Consensus 91 ~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~ 137 (172)
T 1t5i_A 91 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSD 137 (172)
T ss_dssp CSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECS
T ss_pred hhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEE--EEEEcC
Confidence 99999999999999999999999999999999999987654 445554
No 50
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.76 E-value=7.2e-19 Score=177.24 Aligned_cols=125 Identities=22% Similarity=0.329 Sum_probs=99.0
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
.+.|+..|.++|... ..+.|+|||+++...++.|...|...|+.+..++|+++..+|..+++.|+++... +||+|++
T Consensus 29 ~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~--vLvaT~~ 105 (185)
T 2jgn_A 29 ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP--ILVATAV 105 (185)
T ss_dssp GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS--EEEEEC-
T ss_pred cHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEcCh
Confidence 457999999999874 3678999999999999999999999999999999999999999999999987554 8899999
Q ss_pred cccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 594 GGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 594 gg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
+++|+|++.++.||+||+|||+..+.|++||++|.|++.. ++.|++..
T Consensus 106 ~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 106 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp -----CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 9999999999999999999999999999999999998654 46666654
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.76 E-value=1.4e-18 Score=198.42 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=86.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCE-----
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANR----- 605 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~----- 605 (875)
.+.++|||++.....+.+...|...|+++..++|. +|+++++.|.++... +|++|++.++|+|+. +.+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~--vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD--FVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS--EEEECGGGGTSCCCC-CSEEEECC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe--EEEECchHHcCcccC-CcEEEecC
Confidence 35689999999999999999999999999999997 588899999987554 899999999999999 544
Q ss_pred ------------EEEcCCCCCchhHHHhhhcccccCCcc-eEEEE
Q 044036 606 ------------VVIFDPNWNPAQDLQAQDRSFRFGQKR-HVIVF 637 (875)
Q Consensus 606 ------------VI~~D~~WNp~~~~QaigR~~RiGQ~k-~V~Vy 637 (875)
||++|.+.++..+.|++||++|.|... .+.+|
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 577889999999999999999999644 44333
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.76 E-value=1.2e-17 Score=198.09 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
.|+.+|.+++...+..|..|||||.++...+.|...|...|+++..++|.....+|..+...|+.+ . ++|+|+.+|
T Consensus 425 ~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~--VtIATnmAg 500 (853)
T 2fsf_A 425 EKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A--VTIATNMAG 500 (853)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C--EEEEESCCS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e--EEEeccccc
Confidence 599999999988778899999999999999999999999999999999998777777777788765 2 899999999
Q ss_pred cccCCCCC-------------------------------------CEEEEcCCCCCchhHHHhhhcccccCCcceE
Q 044036 596 LGLNLVSA-------------------------------------NRVVIFDPNWNPAQDLQAQDRSFRFGQKRHV 634 (875)
Q Consensus 596 ~GLNL~~A-------------------------------------n~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V 634 (875)
+|+|+... .+||.+|.|-++..|.|++||++|.|..-..
T Consensus 501 RGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 501 RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred CCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999863 5999999999999999999999999986544
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.76 E-value=5.8e-17 Score=192.34 Aligned_cols=123 Identities=19% Similarity=0.125 Sum_probs=105.0
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+.+|.+.+...+..|..||||+.++...+.|...|...|+++..|+|.....+|.-+...|+.+ . ++|+|+.+
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~--VtIATnmA 518 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--G--VTVATNMA 518 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--C--EEEEETTC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e--EEEecchh
Confidence 3599999999988778899999999999999999999999999999999998766666666677654 2 79999999
Q ss_pred ccccCCCCC----------------------------------------------------CEEEEcCCCCCchhHHHhh
Q 044036 595 GLGLNLVSA----------------------------------------------------NRVVIFDPNWNPAQDLQAQ 622 (875)
Q Consensus 595 g~GLNL~~A----------------------------------------------------n~VI~~D~~WNp~~~~Qai 622 (875)
|+|+|+... .+||.+|.|-++..|.|++
T Consensus 519 gRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~ 598 (922)
T 1nkt_A 519 GRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLR 598 (922)
T ss_dssp STTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHH
T ss_pred hcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHh
Confidence 999999864 4999999999999999999
Q ss_pred hcccccCCcceEEEEEEeeCC
Q 044036 623 DRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 623 gR~~RiGQ~k~V~VyrLi~~g 643 (875)
||++|.|..-.. ..|++..
T Consensus 599 GRTGRqGdpG~s--~fflSle 617 (922)
T 1nkt_A 599 GRSGRQGDPGES--RFYLSLG 617 (922)
T ss_dssp HTSSGGGCCEEE--EEEEETT
T ss_pred cccccCCCCeeE--EEEechh
Confidence 999998886543 3345543
No 54
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.75 E-value=4.8e-18 Score=194.51 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=81.2
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEE--
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI-- 608 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~-- 608 (875)
.+.++|||++....++.+...|...|+++..++| ++|.++++.|+++... +|++|++.++|+|+. ++.||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~--vLVaT~v~e~GiDip-v~~VI~~g 248 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD--FILATDIAEMGANLC-VERVLDCR 248 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS--EEEESSSTTCCTTCC-CSEEEECC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce--EEEECChhheeeccC-ceEEEeCC
Confidence 4789999999999999999999999999999999 4688999999987554 899999999999999 999985
Q ss_pred -----------------cCCCCCchhHHHhhhcccccC-CcceEEEEEEe
Q 044036 609 -----------------FDPNWNPAQDLQAQDRSFRFG-QKRHVIVFRLL 640 (875)
Q Consensus 609 -----------------~D~~WNp~~~~QaigR~~RiG-Q~k~V~VyrLi 640 (875)
||.+.++..+.|++||++|.| +... +|.|+
T Consensus 249 ~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~--~~~l~ 296 (440)
T 1yks_A 249 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGD--SYYYS 296 (440)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE--EEEEC
T ss_pred ccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCce--EEEEe
Confidence 899999999999999999985 4333 34454
No 55
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.74 E-value=1.4e-17 Score=164.51 Aligned_cols=125 Identities=22% Similarity=0.313 Sum_probs=109.3
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
.|+..|.+++... .+.|+|||+++...++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|++++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~ 91 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR--ILISTDLLA 91 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEEEGGGT
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE--EEEEcChhh
Confidence 3999999999875 678999999999999999999999999999999999999999999999987554 788999999
Q ss_pred cccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHH
Q 044036 596 LGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLE 646 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiE 646 (875)
+|+|++.++.||+||++||+..+.|++||++|.|+... ++.|++.+..+
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~~ 140 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDVG 140 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTHH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHHH
Confidence 99999999999999999999999999999999997664 46677776543
No 56
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.74 E-value=5.2e-18 Score=195.41 Aligned_cols=105 Identities=20% Similarity=0.162 Sum_probs=88.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEE--
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI-- 608 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~-- 608 (875)
.+.++|||+++...++.+...|...|+.+..++|. +|.++++.|.++... +||+|+++++|||+.+ +.||.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~--iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD--FVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS--EEEESSCC---CCCSC-SEEEECC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce--EEEECChHHhCeecCC-CEEEECC
Confidence 36799999999999999999999999999999995 678899999987544 8999999999999999 99998
Q ss_pred ------------------cCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 609 ------------------FDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 609 ------------------~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
||+|.++..+.|++||++|.|.. +-.+|.|++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 88999999999999999999963 23446667665
No 57
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.73 E-value=9.8e-18 Score=192.72 Aligned_cols=94 Identities=19% Similarity=0.173 Sum_probs=85.6
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcC
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFD 610 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D 610 (875)
.+.++|||+++....+.+...|...|+.+..++|.+. +++++.|.++... +||+|+++++|||+.. +.||.||
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~--vLVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD--FVVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS--EEEECGGGGSSCCCCC-SEEEECC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce--EEEECCHHHhCcCCCC-CEEEECC
Confidence 3568999999999999999999999999999999754 6789999987554 8999999999999999 9999998
Q ss_pred --------------------CCCCchhHHHhhhcccccCCc
Q 044036 611 --------------------PNWNPAQDLQAQDRSFRFGQK 631 (875)
Q Consensus 611 --------------------~~WNp~~~~QaigR~~RiGQ~ 631 (875)
++.++..+.|++||++|.|..
T Consensus 260 ~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 260 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred CcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 889999999999999999973
No 58
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.73 E-value=8.7e-18 Score=170.13 Aligned_cols=123 Identities=16% Similarity=0.247 Sum_probs=107.8
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
...|+..|.++|.. .+.|+|||+++...++.|...|...|+.+..++|++++.+|.++++.|+++... +||+|++
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~--vLvaT~~ 113 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD--VLVATDV 113 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS--EEEECHH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE--EEEEcCc
Confidence 34689888888865 467999999999999999999999999999999999999999999999987544 8899999
Q ss_pred cccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 594 GGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 594 gg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
+++|+|++.++.||+||+|||+..+.|++||++|.|++..+ +.|++..
T Consensus 114 ~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 114 ASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 99999999999999999999999999999999999997654 5566654
No 59
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.73 E-value=1.3e-17 Score=174.75 Aligned_cols=141 Identities=20% Similarity=0.297 Sum_probs=110.7
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQ 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~ 212 (875)
...|+|||.+++..++. +..+|++++||+|||+++++++..+ .+++|||||. .|+.
T Consensus 91 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~-------------------~~~~liv~P~~~L~~ 147 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------------------STPTLIVVPTLALAE 147 (237)
T ss_dssp CCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS-------------------CSCEEEEESSHHHHH
T ss_pred CCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc-------------------CCCEEEEeCCHHHHH
Confidence 45899999999997654 4558999999999999998887643 4579999997 7899
Q ss_pred HHHHHHHHhcCCc-EEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHH
Q 044036 213 NWEIEFSRWSTFN-VSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACL 291 (875)
Q Consensus 213 qW~~E~~k~~~~~-v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~ 291 (875)
||.+++.+| +.. +.+++|.... ..+|+|+||+.+......+. ..|++||+||||++.+.. ..+.+.
T Consensus 148 q~~~~~~~~-~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~ 214 (237)
T 2fz4_A 148 QWKERLGIF-GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQ 214 (237)
T ss_dssp HHHHHHGGG-CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHH
T ss_pred HHHHHHHhC-CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHH
Confidence 999999994 666 8889887643 45799999998876554332 359999999999997753 334556
Q ss_pred hccccceEEeecCCCCCCH
Q 044036 292 ELKTRNRIGLTGTIMQNKI 310 (875)
Q Consensus 292 ~l~~~~rllLTGTPiqN~~ 310 (875)
.+...++++|||||.+++-
T Consensus 215 ~~~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 215 MSIAPFRLGLTATFEREDG 233 (237)
T ss_dssp TCCCSEEEEEEESCC----
T ss_pred hccCCEEEEEecCCCCCCC
Confidence 6788999999999987653
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.73 E-value=2.6e-16 Score=204.66 Aligned_cols=156 Identities=15% Similarity=0.256 Sum_probs=100.8
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+.|.|.+++.-++ ..+.+.+++.++|+|||+.+...+...+.+ ...+++|+|+|. .|+.|-
T Consensus 926 ~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~--------------~~~~kavyi~P~raLa~q~ 988 (1724)
T 4f92_B 926 FFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQ--------------SSEGRCVYITPMEALAEQV 988 (1724)
T ss_dssp BCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHH--------------CTTCCEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHh--------------CCCCEEEEEcChHHHHHHH
Confidence 57789999997664 357789999999999999876555544321 235679999995 666664
Q ss_pred HHHH----HHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccc----cccccEEEEcCCccccCcccHH
Q 044036 215 EIEF----SRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILS----EVNWEIVIVDEAHRLKNEKSKL 286 (875)
Q Consensus 215 ~~E~----~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~----~~~w~~VIiDEAH~ikn~~S~~ 286 (875)
.+++ ....+.+|..++|+...... .. .+.+|+|+|++.+........ --+..+||+||+|.+.......
T Consensus 989 ~~~~~~~f~~~~g~~V~~ltGd~~~~~~-~~--~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~ 1065 (1724)
T 4f92_B 989 YMDWYEKFQDRLNKKVVLLTGETSTDLK-LL--GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPV 1065 (1724)
T ss_dssp HHHHHHHHTTTSCCCEEECCSCHHHHHH-HH--HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHH
T ss_pred HHHHHHHhchhcCCEEEEEECCCCcchh-hc--CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCcc
Confidence 4444 33345788889997543322 22 245899999998643221111 1145899999999997654333
Q ss_pred HHH-HHhc--------cccceEEeecCCCCCCHHHH
Q 044036 287 YMA-CLEL--------KTRNRIGLTGTIMQNKIMEL 313 (875)
Q Consensus 287 ~ka-l~~l--------~~~~rllLTGTPiqN~~~El 313 (875)
... +..+ ...+.++||||- .|..|+
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl--~N~~dl 1099 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSL--SNAKDV 1099 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCB--TTHHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCC--CCHHHH
Confidence 222 2222 234568999994 245554
No 61
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.72 E-value=7.9e-16 Score=184.48 Aligned_cols=125 Identities=22% Similarity=0.240 Sum_probs=110.3
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
+++..|...|..+...+.+||||+.+....+.|..+|...|+++..++|++++.+|.++++.|..+... +|++|++.+
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~--VLvaT~~l~ 500 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD--CLVGINLLR 500 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS--EEEESCCCC
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce--EEEccChhh
Confidence 466667777777777899999999999999999999999999999999999999999999999986543 899999999
Q ss_pred cccCCCCCCEEEEcCC-----CCCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 596 LGLNLVSANRVVIFDP-----NWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~-----~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
+|+|++.++.||++|. ++++..+.|++||++|.|. -.++.|+...+.
T Consensus 501 ~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~~ 552 (664)
T 1c4o_A 501 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVSE 552 (664)
T ss_dssp TTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCCH
T ss_pred cCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCCH
Confidence 9999999999999998 8999999999999999863 346667776653
No 62
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.72 E-value=4.2e-17 Score=194.35 Aligned_cols=107 Identities=22% Similarity=0.319 Sum_probs=95.1
Q ss_pred EEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCC---
Q 044036 535 ILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDP--- 611 (875)
Q Consensus 535 VLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~--- 611 (875)
.|||+.....++.+...|...|+.+..++|++++++|.++++.|+++++..-+|++|++++.|||+ .+++||++|.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc
Confidence 478888899999999999999999999999999999999999999843333489999999999999 9999999999
Q ss_pred -----------CCCchhHHHhhhcccccCCc-ceEEEEEEeeC
Q 044036 612 -----------NWNPAQDLQAQDRSFRFGQK-RHVIVFRLLSA 642 (875)
Q Consensus 612 -----------~WNp~~~~QaigR~~RiGQ~-k~V~VyrLi~~ 642 (875)
+++++.+.|++||++|.|+. ....||.+...
T Consensus 402 ~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 402 SINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp ----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 45667777544
No 63
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.72 E-value=1e-17 Score=200.17 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=88.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEE--
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVI-- 608 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~-- 608 (875)
.+.++|||++.....+.+...|...|+++..++|. +|.++++.|.++... +||+|+++++|||+. +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~--VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD--FVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS--EEEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce--EEEECchhhcceeeC-CcEEEECC
Confidence 57899999999999999999999999999999994 799999999987554 899999999999999 999997
Q ss_pred ------------------cCCCCCchhHHHhhhccccc-CCcceEEEEEEe
Q 044036 609 ------------------FDPNWNPAQDLQAQDRSFRF-GQKRHVIVFRLL 640 (875)
Q Consensus 609 ------------------~D~~WNp~~~~QaigR~~Ri-GQ~k~V~VyrLi 640 (875)
||+|.++..+.|++||++|. |+.-. +|.|+
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~--ai~l~ 530 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGD--EYHYG 530 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCE--EEEEC
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCE--EEEEE
Confidence 67888899999999999999 44433 34454
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=161.65 Aligned_cols=124 Identities=26% Similarity=0.339 Sum_probs=107.4
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
.|+..|.+++... .+.|+|||+++...++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|++++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~--vLvaT~~~~ 95 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK--VLITTNVCA 95 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS--EEEECCSCC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEecchh
Confidence 4899999998764 567999999999999999999999999999999999999999999999987544 889999999
Q ss_pred cccCCCCCCEEEEcCCC------CCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 596 LGLNLVSANRVVIFDPN------WNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~~------WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
+|+|++.+++||+||+| |++..+.|++||++|.|+. ..++.|+..+..
T Consensus 96 ~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~~ 149 (175)
T 2rb4_A 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDEL 149 (175)
T ss_dssp TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGGH
T ss_pred cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccchH
Confidence 99999999999999999 6678999999999999965 456778877653
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.70 E-value=3.3e-17 Score=193.22 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=85.5
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEE---
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVV--- 607 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI--- 607 (875)
.+.++|||++....++.+...|...|+++..++|++++++ |..+.. -+||+|+++++|||+. ++.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~--~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD--VVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC--EEEEECTTHHHHCCCC-BSEEEECC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC--cEEEECChHHccCCCC-CcEEEecC
Confidence 5789999999999999999999999999999999999764 443333 5899999999999986 99888
Q ss_pred -------EcC-----------CCCCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 608 -------IFD-----------PNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 608 -------~~D-----------~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
+|| .|-++..+.||+||++| |..-. |.|++....
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e~ 516 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGER 516 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCCB
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecchh
Confidence 577 77888999999999999 65433 788887643
No 66
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.69 E-value=4.4e-17 Score=193.44 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=89.1
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEE----
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRV---- 606 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~V---- 606 (875)
.+.++|||+++....+.+...|...|+++..++|. +|.+++++|+++... +||+|+++++|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~--VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD--FVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS--EEEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE--EEEECcHHHcCcccC-ceEEEECc
Confidence 46799999999999999999999999999999995 788899999886544 899999999999996 8888
Q ss_pred ----------------EEcCCCCCchhHHHhhhcccccCCcceEEEEEEee
Q 044036 607 ----------------VIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLS 641 (875)
Q Consensus 607 ----------------I~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~ 641 (875)
|+||+|-++..+.||+||++|.|.... .+|.|++
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 677778888899999999999986433 3566776
No 67
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.69 E-value=2.4e-16 Score=162.26 Aligned_cols=124 Identities=19% Similarity=0.291 Sum_probs=111.3
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
...|+..|.+++... .+.++|||+++...++.+...|...|+.+..++|++++.+|..+++.|+++... +||+|++
T Consensus 15 ~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~--vlvaT~~ 90 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR--VLVATDV 90 (212)
T ss_dssp TTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC--EEEECTT
T ss_pred HHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe--EEEecCh
Confidence 357999999999864 578999999999999999999999999999999999999999999999987544 7999999
Q ss_pred cccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 594 GGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 594 gg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
+++|+|++++++||+||+||++..+.|++||++|.|+.. .+|.|++..
T Consensus 91 ~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 91 AARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp TTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred hhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 999999999999999999999999999999999999764 456777665
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.69 E-value=1.8e-15 Score=196.76 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=104.5
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC-cchHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP-SSVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sLl~q 213 (875)
.+|.+.|..++.-++ ..+.+.+++.++|+|||+.+...+...+.+...... .......++|+|+| .+|..+
T Consensus 78 ~~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~-----~~~~~~~k~lyiaP~kALa~e 149 (1724)
T 4f92_B 78 KTLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDG-----TINVDDFKIIYIAPMRSLVQE 149 (1724)
T ss_dssp SBCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTS-----SCCTTSCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccc-----cccCCCCEEEEECCHHHHHHH
Confidence 478899999987654 367889999999999999976555544432211100 01224668999999 577777
Q ss_pred HHHHHHHhc---CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc------cccccccccEEEEcCCccccCccc
Q 044036 214 WEIEFSRWS---TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG------SILSEVNWEIVIVDEAHRLKNEKS 284 (875)
Q Consensus 214 W~~E~~k~~---~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~------~~l~~~~w~~VIiDEAH~ikn~~S 284 (875)
-.++|.+.+ +++|..++|+...... .....+|+|||++.+.... ..+. ...+||+||+|.+.+...
T Consensus 150 ~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~--~v~~vIiDEvH~l~d~RG 224 (1724)
T 4f92_B 150 MVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQ--LVRLIILDEIHLLHDDRG 224 (1724)
T ss_dssp HHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHT--TEEEEEETTGGGGGSTTH
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhc--CcCEEEEecchhcCCccH
Confidence 777776543 3788889997432111 1235689999999764221 1222 357899999999976432
Q ss_pred HHHH-----HHH---hc-cccceEEeecCCCCCCHHHH
Q 044036 285 KLYM-----ACL---EL-KTRNRIGLTGTIMQNKIMEL 313 (875)
Q Consensus 285 ~~~k-----al~---~l-~~~~rllLTGTPiqN~~~El 313 (875)
.... .+. .. ...++++||||- .|++|+
T Consensus 225 ~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dv 260 (1724)
T 4f92_B 225 PVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDV 260 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHH
Confidence 2222 111 12 234679999993 245554
No 69
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.68 E-value=6.7e-15 Score=176.34 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=110.4
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcc
Q 044036 516 GKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGG 595 (875)
Q Consensus 516 ~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg 595 (875)
+++..|...|..+...+.+||||+.+....+.|...|...|+++..++|.+++.+|.+++++|.++... +|++|++.+
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~--VLVaT~~l~ 506 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD--VLVGINLLR 506 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS--EEEESCCCS
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE--EEEecchhh
Confidence 466667777777777889999999999999999999999999999999999999999999999876443 899999999
Q ss_pred cccCCCCCCEEEEcCC-----CCCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 596 LGLNLVSANRVVIFDP-----NWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 596 ~GLNL~~An~VI~~D~-----~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
+|+|++.++.||++|. ++++..+.|++||++|. ++-.++.|+...+.
T Consensus 507 ~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 507 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITK 558 (661)
T ss_dssp TTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCH
T ss_pred CCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCH
Confidence 9999999999999998 89999999999999996 23456677877654
No 70
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.49 E-value=4.1e-18 Score=169.25 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=110.1
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+..|.+++... .+.|+|||+++...++.+...|...|+.+..++|+++..+|.++++.|+++... +|++|+++
T Consensus 15 ~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~--vLvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN--VLVATDVA 90 (170)
Confidence 45888899988763 578999999999999999999999999999999999999999999999986543 89999999
Q ss_pred ccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCC
Q 044036 595 GLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAG 643 (875)
Q Consensus 595 g~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~g 643 (875)
++|+|++.+++||+||++||+..+.|++||++|.||...+ +.|+...
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~ 137 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTA--ISLVEAH 137 (170)
Confidence 9999999999999999999999999999999999987665 4445443
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.65 E-value=1.6e-14 Score=168.03 Aligned_cols=124 Identities=17% Similarity=0.164 Sum_probs=104.2
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG 594 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag 594 (875)
..|+.+|.+++...+..|.+||||+.+....+.|...|...|++...++|.....+|.-+...|..+ . ++|+|+.+
T Consensus 457 ~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~--VtVATdmA 532 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--M--VTIATNMA 532 (822)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--C--EEEEETTT
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--e--EEEEcchh
Confidence 4689999999988777899999999999999999999999999999999995555554444555543 2 89999999
Q ss_pred ccccCCC--------CCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCC
Q 044036 595 GLGLNLV--------SANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGS 644 (875)
Q Consensus 595 g~GLNL~--------~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gT 644 (875)
|+|+|+. +..+||.+|.|-++..|.|++||++|.|..-.. +.|++...
T Consensus 533 gRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a--~~fvsleD 588 (822)
T 3jux_A 533 GRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES--IFFLSLED 588 (822)
T ss_dssp TTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE--EEEEETTS
T ss_pred hCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE--EEEechhH
Confidence 9999998 667999999999999999999999999987554 33555543
No 72
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.65 E-value=1.2e-15 Score=185.57 Aligned_cols=110 Identities=22% Similarity=0.164 Sum_probs=96.0
Q ss_pred CCCeEEEEecchhHHHHHHHHHHH-----------cCCcEEEEeCCCCHHHHHHHHHHhc-----CCCCceEEEEecCCc
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIR-----------KGYSFSRLDGSTPSNLRQSLVDDFN-----SSPSKQVFLISTRAG 594 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~-----------~g~~~~~ldG~~~~~eR~~~i~~F~-----~~~~~~v~LiSt~ag 594 (875)
.+.++|||++....++.+...|.. .++.+..++|+++.++|.++++.|. ++ ..-+||+|.++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g--~~kVlVAT~ia 379 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP--GRKVVISTNIA 379 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC--CEEEEEECTHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC--ceEEEEeCcHH
Confidence 577999999999999999998875 5888999999999999999999998 43 34589999999
Q ss_pred ccccCCCCCCEEEEcCC------------------CCCchhHHHhhhcccccCCcceEEEEEEeeCCCH
Q 044036 595 GLGLNLVSANRVVIFDP------------------NWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSL 645 (875)
Q Consensus 595 g~GLNL~~An~VI~~D~------------------~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTi 645 (875)
+.|||+.+.+.||.++. +.+.+.+.||+||++|. ++-.+|+|+++...
T Consensus 380 e~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 380 ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 99999999999999766 78999999999999997 45678888865443
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.65 E-value=1.1e-15 Score=156.09 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=112.5
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..+.+ ++++|+..++|+|||++++..+...+.... ......++|||||. .++.||
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~----------~~~~~~~~lil~P~~~L~~q~ 88 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQ----------ERGRKPRALVLTPTRELALQV 88 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCC----------CTTCCCSEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhcc----------ccCCCCcEEEEECCHHHHHHH
Confidence 689999999998776 688999999999999997666655443211 01245689999997 789999
Q ss_pred HHHHHHhcC-CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHHHHH
Q 044036 215 EIEFSRWST-FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKLYMA 289 (875)
Q Consensus 215 ~~E~~k~~~-~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~~ka 289 (875)
.+++.++++ .++..++|.............+.+|+|+|++.+.... ..+...++++||+||||++.+.. ......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i 168 (207)
T 2gxq_A 89 ASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEAL 168 (207)
T ss_dssp HHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHH
Confidence 999999986 7888888765433222222346799999998875432 22333468999999999985432 334444
Q ss_pred HHhcc-ccceEEeecCCC
Q 044036 290 CLELK-TRNRIGLTGTIM 306 (875)
Q Consensus 290 l~~l~-~~~rllLTGTPi 306 (875)
+..+. ....+++|||+-
T Consensus 169 ~~~~~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 169 LSATPPSRQTLLFSATLP 186 (207)
T ss_dssp HHTSCTTSEEEEECSSCC
T ss_pred HHhCCccCeEEEEEEecC
Confidence 44554 456799999983
No 74
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.63 E-value=2.5e-15 Score=155.31 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=114.8
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..+++ +.++|+..++|+|||+.++..+...+... ....++|||||. .|+.||
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~-------------~~~~~~lil~Pt~~L~~q~ 98 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-------------TGQVSVLVMCHTRELAFQI 98 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCC-------------TTCCCEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhcc-------------CCCEEEEEEeCCHHHHHHH
Confidence 489999999998876 67899999999999999887776654321 134589999996 789999
Q ss_pred HHHHHHhc----CCcEEEEeCCCh-hHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc---c
Q 044036 215 EIEFSRWS----TFNVSIYHGPNR-DMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK---S 284 (875)
Q Consensus 215 ~~E~~k~~----~~~v~v~~G~~r-~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~---S 284 (875)
.+++.++. ..++.+++|... ......+..+..+|+|+|++.+.... ..+...++++||+||||++.... .
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~ 178 (220)
T 1t6n_A 99 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRR 178 (220)
T ss_dssp HHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHH
T ss_pred HHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHH
Confidence 99999986 478888888643 34445555666799999999876432 22333468999999999985421 2
Q ss_pred HHHHHHHhcc-ccceEEeecCCCCCCHHH
Q 044036 285 KLYMACLELK-TRNRIGLTGTIMQNKIME 312 (875)
Q Consensus 285 ~~~kal~~l~-~~~rllLTGTPiqN~~~E 312 (875)
.....+..+. ..++++|||||- +...+
T Consensus 179 ~~~~i~~~~~~~~~~i~~SAT~~-~~~~~ 206 (220)
T 1t6n_A 179 DVQEIFRMTPHEKQVMMFSATLS-KEIRP 206 (220)
T ss_dssp HHHHHHHTSCSSSEEEEEESCCC-TTTHH
T ss_pred HHHHHHHhCCCcCeEEEEEeecC-HHHHH
Confidence 2223333343 457799999984 34444
No 75
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=161.42 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=102.2
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..|+|||.+++..++. +.++|+..++|+|||++++.++...+... ......+++|||||. .|+.|
T Consensus 32 ~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~----------~~~~~~~~~lil~p~~~L~~q 97 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKK----------KKASEPGKVIVLVNKVLLVEQ 97 (216)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHH----------HHTTCCCCEEEEESSHHHHHH
T ss_pred CCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhc----------ccccCCCcEEEEECHHHHHHH
Confidence 4799999999998875 67899999999999999988877654221 001235789999997 67788
Q ss_pred -HHHHHHHhcC--CcEEEEeCCChhHH-HHHHHhCCceEEEeecccccccccc--------cccccccEEEEcCCccccC
Q 044036 214 -WEIEFSRWST--FNVSIYHGPNRDMI-LEKLEACGVEVLITSFDSYRIHGSI--------LSEVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 214 -W~~E~~k~~~--~~v~v~~G~~r~~~-~~~~~~~~~~VvItTy~~l~~~~~~--------l~~~~w~~VIiDEAH~ikn 281 (875)
|.+++.+|.. .++..++|...... ..... ...+|+|+|++.+...... +...+|++||+||||++..
T Consensus 98 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 98 LFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV-KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HHHHTHHHHHTTTSCEEECCC---CCCCHHHHH-HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred HHHHHHHHHhccCceEEEEeCCcccchhHHhhc-cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 9999999975 68888887643211 11111 2468999999988643322 3345789999999999965
Q ss_pred cccHHH---HHHHhc--------------cccceEEeecC
Q 044036 282 EKSKLY---MACLEL--------------KTRNRIGLTGT 304 (875)
Q Consensus 282 ~~S~~~---kal~~l--------------~~~~rllLTGT 304 (875)
...... ..+... ...++++||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 177 EAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 322111 111111 34678999998
No 76
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.61 E-value=4.6e-15 Score=160.39 Aligned_cols=125 Identities=19% Similarity=0.290 Sum_probs=109.4
Q ss_pred cCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCC
Q 044036 514 SCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRA 593 (875)
Q Consensus 514 ~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~a 593 (875)
.+.|+.+|.+++... .+.++|||+++...++.|...|...|+.+..++|++++.+|..+++.|+++... +||+|++
T Consensus 12 ~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~--vLVaT~v 87 (300)
T 3i32_A 12 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR--VLVATDV 87 (300)
T ss_dssp SSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC--EEEECST
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce--EEEEech
Confidence 356999999999875 488999999999999999999999999999999999999999999999987544 8999999
Q ss_pred cccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCC
Q 044036 594 GGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGS 644 (875)
Q Consensus 594 gg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gT 644 (875)
+++|+|++++++||+||++||+..+.|++||++|.|+.. .+|.|++...
T Consensus 88 a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 88 AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 999999999999999999999999999999999999764 5677777654
No 77
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.58 E-value=1.2e-14 Score=148.45 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=109.8
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++. ++++|+..++|+|||+.++..+...+.. .....++|||||. .|+.||
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------~~~~~~~lil~Pt~~L~~q~ 87 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDL-------------KKDNIQAMVIVPTRELALQV 87 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCT-------------TSCSCCEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcc-------------cCCCeeEEEEeCcHHHHHHH
Confidence 689999999998765 6889999999999999877665554321 1234679999996 678999
Q ss_pred HHHHHHhc----CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHH
Q 044036 215 EIEFSRWS----TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKL 286 (875)
Q Consensus 215 ~~E~~k~~----~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~ 286 (875)
.+++.++. ...+..++|.............+.+|+|+|++.+.... ..+...++++||+||||++.... ...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l 167 (206)
T 1vec_A 88 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIM 167 (206)
T ss_dssp HHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred HHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHH
Confidence 99998886 46778888775443222222456799999999875332 12233467999999999986533 223
Q ss_pred HHHHHhcc-ccceEEeecCC
Q 044036 287 YMACLELK-TRNRIGLTGTI 305 (875)
Q Consensus 287 ~kal~~l~-~~~rllLTGTP 305 (875)
...+..++ ...+++||||+
T Consensus 168 ~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 168 EDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp HHHHHHSCTTCEEEEEESCC
T ss_pred HHHHHhCCccceEEEEEeeC
Confidence 34444454 56789999998
No 78
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.58 E-value=6.2e-15 Score=152.34 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=111.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++. +.++|+..++|+|||++++..+...+.. .....++|||||. .|+.||
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------------~~~~~~~lil~Pt~~L~~q~ 88 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKP-------------ERAEVQAVITAPTRELATQI 88 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCT-------------TSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHh-------------CcCCceEEEEcCcHHHHHHH
Confidence 589999999998886 6889999999999999876665554322 1235679999996 788999
Q ss_pred HHHHHHhc-------CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--
Q 044036 215 EIEFSRWS-------TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK-- 283 (875)
Q Consensus 215 ~~E~~k~~-------~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~-- 283 (875)
.+++.++. ...+..+.|.............+++|+|+|++.+.... ..+....+++||+||||++.+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~ 168 (219)
T 1q0u_A 89 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFI 168 (219)
T ss_dssp HHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCH
T ss_pred HHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChH
Confidence 99999886 35677777765432111111236789999998876422 22333467899999999986533
Q ss_pred cHHHHHHHhcc-ccceEEeecCCCCCCHHH
Q 044036 284 SKLYMACLELK-TRNRIGLTGTIMQNKIME 312 (875)
Q Consensus 284 S~~~kal~~l~-~~~rllLTGTPiqN~~~E 312 (875)
......+..+. ...++++|||+ .+.+.+
T Consensus 169 ~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 169 TDVDQIAARMPKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp HHHHHHHHTSCTTCEEEEEESCC-CGGGHH
T ss_pred HHHHHHHHhCCcccEEEEEecCC-CHHHHH
Confidence 33444555554 45679999997 444444
No 79
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.57 E-value=1.5e-14 Score=150.73 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=109.3
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..+.. +.++|+..++|+|||++++..+...+.. .....++|||||. .|+.||
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~-------------~~~~~~~lil~Pt~~L~~q~ 108 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVL-------------ENLSTQILILAPTREIAVQI 108 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCT-------------TSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHh-------------cCCCceEEEEeCCHHHHHHH
Confidence 489999999998765 7789999999999999865544433221 1235689999996 789999
Q ss_pred HHHHHHhc----CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc---cH
Q 044036 215 EIEFSRWS----TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK---SK 285 (875)
Q Consensus 215 ~~E~~k~~----~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~---S~ 285 (875)
.+++.++. +.++.+++|.......... ..+.+|+|+|++.+.... ..+...++++||+||||++.+.. ..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 187 (230)
T 2oxc_A 109 HSVITAIGIKMEGLECHVFIGGTPLSQDKTR-LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQ 187 (230)
T ss_dssp HHHHHHHTTTSTTCCEEEECTTSCHHHHHHH-TTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHH
T ss_pred HHHHHHHhcccCCceEEEEeCCCCHHHHHHh-ccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHH
Confidence 99999986 3678888887543322221 236799999999886432 22333467899999999995532 33
Q ss_pred HHHHHHhcc-ccceEEeecCC
Q 044036 286 LYMACLELK-TRNRIGLTGTI 305 (875)
Q Consensus 286 ~~kal~~l~-~~~rllLTGTP 305 (875)
....+..+. ..++++||||+
T Consensus 188 ~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 188 INWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp HHHHHHHSCSSCEEEEEESCC
T ss_pred HHHHHHhCCCCCeEEEEEecc
Confidence 444555564 45679999996
No 80
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=152.32 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=111.3
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..++|||.+++..++. ++++|+..+||+|||++++..+...+..... ......++|||||. .|+.|
T Consensus 46 ~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~---------~~~~~~~~lil~Pt~~L~~q 112 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQW---------TSTDGLGVLIISPTRELAYQ 112 (236)
T ss_dssp CBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTC---------CGGGCCCEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc---------cccCCceEEEEeCCHHHHHH
Confidence 3689999999998875 7889999999999999876655443221100 01235679999996 78999
Q ss_pred HHHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeeccccccccc---ccccccccEEEEcCCccccCcc--cH
Q 044036 214 WEIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGS---ILSEVNWEIVIVDEAHRLKNEK--SK 285 (875)
Q Consensus 214 W~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~---~l~~~~w~~VIiDEAH~ikn~~--S~ 285 (875)
|.+++.+++. +.+..++|......... ...+.+|+|+|++.+..... .+...++++||+||||++.+.. ..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~ 191 (236)
T 2pl3_A 113 TFEVLRKVGKNHDFSAGLIIGGKDLKHEAE-RINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADT 191 (236)
T ss_dssp HHHHHHHHTTTSSCCEEEECCC--CHHHHH-HHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHH
T ss_pred HHHHHHHHhCCCCeeEEEEECCCCHHHHHH-hCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHH
Confidence 9999999875 67888888654322221 12467999999998864322 2334578999999999986543 34
Q ss_pred HHHHHHhcc-ccceEEeecCCC
Q 044036 286 LYMACLELK-TRNRIGLTGTIM 306 (875)
Q Consensus 286 ~~kal~~l~-~~~rllLTGTPi 306 (875)
....+..+. ...+++||||+-
T Consensus 192 ~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 192 MNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp HHHHHHTSCTTSEEEEEESSCC
T ss_pred HHHHHHhCCCCCeEEEEEeeCC
Confidence 445555564 445799999973
No 81
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=153.06 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=111.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++. ++++|+..++|+|||++++..+...+.. .....++|||||. .|+.||
T Consensus 65 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~-------------~~~~~~~lil~Ptr~L~~q~ 127 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLE-------------TPQRLFALVLTPTRELAFQI 127 (249)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHH-------------SCCSSCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhc-------------CCCCceEEEEeCCHHHHHHH
Confidence 689999999998775 7889999999999999976555543321 1234579999996 688999
Q ss_pred HHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc---cccccccccEEEEcCCccccCcc--cHH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG---SILSEVNWEIVIVDEAHRLKNEK--SKL 286 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~---~~l~~~~w~~VIiDEAH~ikn~~--S~~ 286 (875)
.+++.+++. ..+..++|.............+.+|+|+|++.+.... ..+....+++||+||||++.+.. ...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l 207 (249)
T 3ber_A 128 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEV 207 (249)
T ss_dssp HHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHH
Confidence 999998854 6788888875543333333467899999999886432 22333468899999999986542 234
Q ss_pred HHHHHhcc-ccceEEeecCCC
Q 044036 287 YMACLELK-TRNRIGLTGTIM 306 (875)
Q Consensus 287 ~kal~~l~-~~~rllLTGTPi 306 (875)
...+..+. ...+++||||+-
T Consensus 208 ~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 208 DKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp HHHHHSSCSSSEEEEEESSCC
T ss_pred HHHHHhCCCCCeEEEEeccCC
Confidence 44455553 566799999973
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.54 E-value=3.4e-14 Score=150.20 Aligned_cols=163 Identities=13% Similarity=0.122 Sum_probs=110.3
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++. ++++|+..++|+|||+.++..+...+........ ........++|||||. .|+.||
T Consensus 45 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~----~~~~~~~~~~lil~Pt~~L~~q~ 116 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ----RYSKTAYPKCLILAPTRELAIQI 116 (253)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC----------CCBCCSEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccc----cccccCCceEEEEECCHHHHHHH
Confidence 689999999998776 6789999999999999877665544332211000 0001234689999996 789999
Q ss_pred HHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCc--ccHHH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNE--KSKLY 287 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~--~S~~~ 287 (875)
.+++.+++. ..+..++|.............+++|+|+|++.+.... ..+....+++||+||||++.+. .....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 196 (253)
T 1wrb_A 117 LSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIR 196 (253)
T ss_dssp HHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred HHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHH
Confidence 999999864 6677777765433222223457899999999886432 1223346789999999998654 23344
Q ss_pred HHHHhcc-----ccceEEeecCCC
Q 044036 288 MACLELK-----TRNRIGLTGTIM 306 (875)
Q Consensus 288 kal~~l~-----~~~rllLTGTPi 306 (875)
..+..+. ...+++|||||-
T Consensus 197 ~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 197 KIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHHHSSCCCCGGGCEEEEEESSCC
T ss_pred HHHhhccCCCCCCcEEEEEEEeCC
Confidence 4444332 345899999973
No 83
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.53 E-value=3.3e-14 Score=147.23 Aligned_cols=153 Identities=13% Similarity=0.070 Sum_probs=104.1
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++. ++++|+..++|+|||++++..+...+.. .....++|||||. .|+.||
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~-------------~~~~~~~lil~Pt~~L~~q~ 98 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDT-------------SVKAPQALMLAPTRELALQI 98 (224)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCT-------------TCCSCCEEEECSSHHHHHHH
T ss_pred CCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhc-------------cCCCceEEEEECCHHHHHHH
Confidence 689999999998765 6789999999999999855444443321 1245689999996 788999
Q ss_pred HHHHHHhcC---CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHHH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKLY 287 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~~ 287 (875)
.+++.++.. .++..++|.......... ....+|+|+|++.+.... ..+...++++||+||||++.+.. ....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~ 177 (224)
T 1qde_A 99 QKVVMALAFHMDIKVHACIGGTSFVEDAEG-LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIY 177 (224)
T ss_dssp HHHHHHHTTTSCCCEEEECC-----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcccCceEEEEeCCcchHHHHhc-CCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHH
Confidence 999999864 677777776432211111 123789999999875322 22333468999999999985532 2334
Q ss_pred HHHHhcc-ccceEEeecCCC
Q 044036 288 MACLELK-TRNRIGLTGTIM 306 (875)
Q Consensus 288 kal~~l~-~~~rllLTGTPi 306 (875)
..+..+. ..++++||||+-
T Consensus 178 ~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 178 QIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp HHHHHSCTTCEEEEEESSCC
T ss_pred HHHHhCCccCeEEEEEeecC
Confidence 4444453 455799999983
No 84
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.51 E-value=4.5e-14 Score=147.79 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=105.3
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++. +.++|+..++|+|||++++..+...+.. .....++|||||. .|+.||
T Consensus 52 ~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~-------------~~~~~~~lil~Pt~~L~~q~ 114 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEI-------------EFKETQALVLAPTRELAQQI 114 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCT-------------TSCSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHh-------------cCCCceEEEEECcHHHHHHH
Confidence 589999999998775 6789999999999999866666554321 1235689999996 789999
Q ss_pred HHHHHHhcC---CcEEEEeCCCh-hHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCc--ccHH
Q 044036 215 EIEFSRWST---FNVSIYHGPNR-DMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNE--KSKL 286 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r-~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~--~S~~ 286 (875)
.+++.+++. ..+..+.|... ......+..+.++|+|+|++.+.... ..+....+++||+||||++... ....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l 194 (237)
T 3bor_A 115 QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI 194 (237)
T ss_dssp HHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHH
Confidence 999999874 56666666543 33334444555899999998765322 2233346799999999998443 3445
Q ss_pred HHHHHhcc-ccceEEeecCCC
Q 044036 287 YMACLELK-TRNRIGLTGTIM 306 (875)
Q Consensus 287 ~kal~~l~-~~~rllLTGTPi 306 (875)
...+..+. ....+++|||+-
T Consensus 195 ~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 195 YEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp HHHHHHSCTTCEEEEECSSCC
T ss_pred HHHHHhCCCCCeEEEEEEecC
Confidence 55566664 456689999983
No 85
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=142.92 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=105.9
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++. ++++|+..++|+|||+.++..+...+...... .......++|||||. .|+.||
T Consensus 42 ~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~-------~~~~~~~~~lil~Pt~~L~~q~ 110 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS-------REQRNGPGMLVLTPTRELALHV 110 (228)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC----------------CCCSEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccch-------hhccCCCcEEEEeCCHHHHHHH
Confidence 689999999988765 78899999999999998766555443221100 011245679999996 688999
Q ss_pred HHHHHHhcC--CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHHHH
Q 044036 215 EIEFSRWST--FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKLYM 288 (875)
Q Consensus 215 ~~E~~k~~~--~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~~k 288 (875)
.+++.++.. ..+..++|.............+++|+|+|++.+.... ..+...++++||+||||++.+.. .....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 190 (228)
T 3iuy_A 111 EAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRK 190 (228)
T ss_dssp HHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHH
Confidence 999999854 6777777654332222223456899999999876422 22233457999999999986542 23444
Q ss_pred HHHhcc-ccceEEeecCC
Q 044036 289 ACLELK-TRNRIGLTGTI 305 (875)
Q Consensus 289 al~~l~-~~~rllLTGTP 305 (875)
.+..+. ....+++|||.
T Consensus 191 i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 191 ILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHHHSCSSCEEEEEESCC
T ss_pred HHHhCCcCCeEEEEEeeC
Confidence 455554 45668999995
No 86
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.45 E-value=4.2e-13 Score=140.82 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=108.6
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++. +.++|+..++|+|||+.++..+...+..... ......+.+|||||. .|+.||
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~--------~~~~~~~~~lil~Pt~~L~~Q~ 118 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPF--------LERGDGPICLVLAPTRELAQQV 118 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCC--------CCTTCCCSEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccc--------cccCCCCEEEEEeCcHHHHHHH
Confidence 589999999998776 7889999999999999976555544322110 011245679999996 678899
Q ss_pred HHHHHHhc---CCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcc--cHHH
Q 044036 215 EIEFSRWS---TFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEK--SKLY 287 (875)
Q Consensus 215 ~~E~~k~~---~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~--S~~~ 287 (875)
.+++.++. +.++..++|.............+++|+|+|++.+.... ..+...++++||+||||++-... ....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~ 198 (242)
T 3fe2_A 119 QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIR 198 (242)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHH
Confidence 88888875 46777777765443332223346799999998875332 12233467899999999986532 2333
Q ss_pred HHHHhc-cccceEEeecCC
Q 044036 288 MACLEL-KTRNRIGLTGTI 305 (875)
Q Consensus 288 kal~~l-~~~~rllLTGTP 305 (875)
..+..+ .....+++|||+
T Consensus 199 ~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 199 KIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp HHHTTSCSSCEEEEEESCC
T ss_pred HHHHhCCccceEEEEEeec
Confidence 444444 345679999996
No 87
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.45 E-value=4.4e-13 Score=142.54 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=109.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|+|.+++..++. ++++|+..++|+|||+.++..+...+.+... .......+|||||. .|+.||
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~---------~~~~~~~~lil~Pt~~La~q~ 142 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRF---------MPRNGTGVLILSPTRELAMQT 142 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTC---------CGGGCCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccc---------cccCCceEEEEeCCHHHHHHH
Confidence 589999999998776 6789999999999999866555543322110 01235679999996 788999
Q ss_pred HHHHHHhcC---CcEEEEeCCChh-HHHHHHHhCCceEEEeeccccccccc---ccccccccEEEEcCCccccCc--ccH
Q 044036 215 EIEFSRWST---FNVSIYHGPNRD-MILEKLEACGVEVLITSFDSYRIHGS---ILSEVNWEIVIVDEAHRLKNE--KSK 285 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~-~~~~~~~~~~~~VvItTy~~l~~~~~---~l~~~~w~~VIiDEAH~ikn~--~S~ 285 (875)
.+++.+++. ..+..+.|.... .....+. .+.+|+|+|++.+..... .+.-.++++||+||||++-.. ...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~ 221 (262)
T 3ly5_A 143 FGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG-NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 221 (262)
T ss_dssp HHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH-HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHH
T ss_pred HHHHHHHHhhcCceEEEEECCCCHHHHHHHhc-CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHH
Confidence 999999865 566777776543 3333333 358999999988754321 122335789999999998653 233
Q ss_pred HHHHHHhcc-ccceEEeecCCC
Q 044036 286 LYMACLELK-TRNRIGLTGTIM 306 (875)
Q Consensus 286 ~~kal~~l~-~~~rllLTGTPi 306 (875)
....+..+. ....++||||+-
T Consensus 222 l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 222 LKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp HHHHHHHSCSSSEEEEECSSCC
T ss_pred HHHHHHhCCCCCeEEEEEecCC
Confidence 344455553 456799999974
No 88
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.43 E-value=2.9e-13 Score=142.17 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=104.2
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.++|||.+++..++. ++++|+..++|+|||+.++..+...+... .....++|||||. .|+.||
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------------~~~~~~~lil~Pt~~L~~q~ 114 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQP------------ANKGFRALIISPTRELASQI 114 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSC------------CSSSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhc------------ccCCceEEEEeCCHHHHHHH
Confidence 589999999988765 67899999999999999766555444221 1234579999996 688999
Q ss_pred HHHHHHhcC---CcEEEEeCCChhH-HHHHHHhCCceEEEeeccccccccc----ccccccccEEEEcCCccccCcc---
Q 044036 215 EIEFSRWST---FNVSIYHGPNRDM-ILEKLEACGVEVLITSFDSYRIHGS----ILSEVNWEIVIVDEAHRLKNEK--- 283 (875)
Q Consensus 215 ~~E~~k~~~---~~v~v~~G~~r~~-~~~~~~~~~~~VvItTy~~l~~~~~----~l~~~~w~~VIiDEAH~ikn~~--- 283 (875)
.+++.+++. ..+..++|..... ........+++|+|+|++.+..... .+...++++||+||||++....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~ 194 (245)
T 3dkp_A 115 HRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTG 194 (245)
T ss_dssp HHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--C
T ss_pred HHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccccccc
Confidence 999999865 5555555532211 0111123467899999998853321 2333467899999999985421
Q ss_pred --cHHHHHHHhc--cccceEEeecCC
Q 044036 284 --SKLYMACLEL--KTRNRIGLTGTI 305 (875)
Q Consensus 284 --S~~~kal~~l--~~~~rllLTGTP 305 (875)
......+..+ ...++++||||+
T Consensus 195 ~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 195 FRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred HHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 2223333333 245679999998
No 89
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.26 E-value=1.3e-10 Score=137.93 Aligned_cols=142 Identities=17% Similarity=0.163 Sum_probs=95.4
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHH-HHhcCCCCCcchhhcccccCCCCcEEEEcCcchH---
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA-AVFGKDESSDSTILKDNKVDKKGYVLIICPSSVI--- 211 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~-~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl--- 211 (875)
..+|-|..|+--|+. | -|....+|.|||+.+...+. ..+ ....++||||+..+
T Consensus 79 ~Pt~VQ~~~ip~Llq----G--~IaeakTGeGKTLvf~Lp~~L~aL-----------------~G~qv~VvTPTreLA~Q 135 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHE----G--KIAEMKTGEGKTLVATLAVALNAL-----------------TGKGVHVVTVNDYLARR 135 (997)
T ss_dssp CCCHHHHHHHHHHHT----T--SEEECCSTHHHHHHHHHHHHHHHT-----------------TCSCCEEEESSHHHHHH
T ss_pred CCcHHHHhhcccccC----C--ceeeccCCCchHHHHHHHHHHHHH-----------------hCCCEEEEeCCHHHHHH
Confidence 556779999987754 3 38889999999998655442 222 23458999998654
Q ss_pred -HHHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeeccccc-----ccc----cccccc---cccEEEEcCCcc
Q 044036 212 -QNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYR-----IHG----SILSEV---NWEIVIVDEAHR 278 (875)
Q Consensus 212 -~qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~-----~~~----~~l~~~---~w~~VIiDEAH~ 278 (875)
.+|...+.++.++++.++.|........ ...+++|++.|+..+. ... ..+... +..++||||||.
T Consensus 136 dae~m~~l~~~lGLsv~~i~Gg~~~~~r~--~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 136 DAEWMGPVYRGLGLSVGVIQHASTPAERR--KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp HHHHHHHHHHTTTCCEEECCTTCCHHHHH--HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCHHHHH--HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 3488888888889998888765433222 2335799999998873 111 122223 578999999997
Q ss_pred ccCcccHHHHHHHhccccceEEeecCCCCCCHHHHHH
Q 044036 279 LKNEKSKLYMACLELKTRNRIGLTGTIMQNKIMELYN 315 (875)
Q Consensus 279 ikn~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~ 315 (875)
+... .+..-+.+|| |++.. ..+|.
T Consensus 214 mLiD-----------eartPLIISg-p~~~~-~~lY~ 237 (997)
T 2ipc_A 214 ILID-----------EARTPLIISG-PAEKA-TDLYY 237 (997)
T ss_dssp HTTS-----------STTSCEEEEE-SCSSC-HHHHH
T ss_pred HHHh-----------CCCCCeeeeC-CCccc-hHHHH
Confidence 5322 2233389999 88766 44443
No 90
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.24 E-value=3.1e-11 Score=130.77 Aligned_cols=154 Identities=11% Similarity=0.069 Sum_probs=101.5
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~q 213 (875)
..++|+|..++..++.. .+++.|+...+|+|||+..+..+...+.. ......+|||||. .|..|
T Consensus 113 ~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~-------------~~~~~~~lil~PtreLa~Q 177 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------------ANKYPQCLCLSPTYELALQ 177 (300)
T ss_dssp CSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCT-------------TSCSCCEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhc-------------cCCCceEEEEcCcHHHHHH
Confidence 36889999999876541 13788999999999999866444443321 1234579999996 67888
Q ss_pred HHHHHHHhcC----CcEEEEeCCChhHHHHHHHhCCceEEEeecccccccc---cccccccccEEEEcCCccccCccc--
Q 044036 214 WEIEFSRWST----FNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHG---SILSEVNWEIVIVDEAHRLKNEKS-- 284 (875)
Q Consensus 214 W~~E~~k~~~----~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~---~~l~~~~w~~VIiDEAH~ikn~~S-- 284 (875)
+.+.+..++. ..+..+.|....... ...+.+|+|+|++.+.... ..+..-+..+|||||||++-....
T Consensus 178 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~ 254 (300)
T 3fmo_B 178 TGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQ 254 (300)
T ss_dssp HHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHH
T ss_pred HHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcH
Confidence 8888887753 567777665432111 1345789999999875433 223334678999999999864211
Q ss_pred -HHHHHHHhcc-ccceEEeecCCC
Q 044036 285 -KLYMACLELK-TRNRIGLTGTIM 306 (875)
Q Consensus 285 -~~~kal~~l~-~~~rllLTGTPi 306 (875)
.....+..+. ....+++|||+-
T Consensus 255 ~~~~~i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 255 DQSIRIQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp HHHHHHHTTSCTTCEEEEEESCCC
T ss_pred HHHHHHHHhCCCCCEEEEEeccCC
Confidence 1222233333 356789999973
No 91
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.17 E-value=1.6e-09 Score=127.03 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=50.3
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCC----CCE
Q 044036 530 SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVS----ANR 605 (875)
Q Consensus 530 ~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~----An~ 605 (875)
..+.++|||..+...++.+...|.. +. ..+.|.. .+|.+++++|+.+. .-.|.+.+....+|||+.+ +..
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 3567899999999999998887754 34 4556654 46889999998843 2123337899999999997 788
Q ss_pred EEEcCCCCCch
Q 044036 606 VVIFDPNWNPA 616 (875)
Q Consensus 606 VI~~D~~WNp~ 616 (875)
||++..|+-+.
T Consensus 456 Vii~~lPf~~~ 466 (540)
T 2vl7_A 456 LVLAGLPYPNV 466 (540)
T ss_dssp EEEESCCCCCT
T ss_pred EEEECCCCCCC
Confidence 99999996544
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.64 E-value=8.1e-08 Score=112.87 Aligned_cols=127 Identities=16% Similarity=0.209 Sum_probs=91.8
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+||||.+.+.-+...+..++.+|+-..+|+|||+..+..+.. ...++||++|+ .+..||
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------------------~~~~v~i~~pt~~l~~q~ 63 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------------------VKPKVLFVVRTHNEFYPI 63 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------------------HCSEEEEEESSGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------------------CCCeEEEEcCCHHHHHHH
Confidence 6899999999988888888888999999999999987665543 14679999996 678899
Q ss_pred HHHHHHhc---CCcEEEEeCCCh----------------------------------hHHHH-----------------H
Q 044036 215 EIEFSRWS---TFNVSIYHGPNR----------------------------------DMILE-----------------K 240 (875)
Q Consensus 215 ~~E~~k~~---~~~v~v~~G~~r----------------------------------~~~~~-----------------~ 240 (875)
.+++.++. +.++.++.|... ..... .
T Consensus 64 ~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar 143 (551)
T 3crv_A 64 YRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLL 143 (551)
T ss_dssp HHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHH
Confidence 99998763 466777666211 11111 1
Q ss_pred HHhCCceEEEeecccccccc--cccc-cccccEEEEcCCccccC
Q 044036 241 LEACGVEVLITSFDSYRIHG--SILS-EVNWEIVIVDEAHRLKN 281 (875)
Q Consensus 241 ~~~~~~~VvItTy~~l~~~~--~~l~-~~~w~~VIiDEAH~ikn 281 (875)
......+|||++|..+-... ..+. .....+||+||||++-+
T Consensus 144 ~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 144 NSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 11235689999999886542 1111 13567899999999966
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.61 E-value=1.2e-08 Score=106.20 Aligned_cols=150 Identities=14% Similarity=0.051 Sum_probs=88.7
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~qW 214 (875)
.+++||.+++..+.. +...++.-++|+|||.+...++.......+ ......+++++|.. +..|.
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-----------~~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQND-----------RAAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTT-----------CGGGCEEEEEESSHHHHHHH
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcC-----------CCCceEEEEeccchHHHHHH
Confidence 478899999998766 677889999999999876555543221110 11244789999975 45566
Q ss_pred HHHHHHhcCC----cEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccc-cCccc---HH
Q 044036 215 EIEFSRWSTF----NVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRL-KNEKS---KL 286 (875)
Q Consensus 215 ~~E~~k~~~~----~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~i-kn~~S---~~ 286 (875)
.+.+...... .+..-....+ .....+.+|+|+|.+.+...... .-.++++||+||||.. -+... ..
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred HHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHH
Confidence 6666655442 1211110000 00013468999999877544321 1235789999999983 11111 11
Q ss_pred HHHHHhccccceEEeecCCC
Q 044036 287 YMACLELKTRNRIGLTGTIM 306 (875)
Q Consensus 287 ~kal~~l~~~~rllLTGTPi 306 (875)
...+........+++|||+-
T Consensus 200 ~~i~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 200 RDVVQAYPEVRIVLMSATID 219 (235)
T ss_dssp HHHHHHCTTSEEEEEECSSC
T ss_pred HHHHhhCCCCeEEEEecCCC
Confidence 12222224456799999974
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.99 E-value=6.2e-06 Score=97.87 Aligned_cols=81 Identities=22% Similarity=0.185 Sum_probs=61.2
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW 214 (875)
.+||+|++.+.-++..+..++.+|+...||+|||+..+..+...+.. ...+++|++|+ .+..|+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---------------~~~kvli~t~T~~l~~Qi 67 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---------------RKLKVLYLVRTNSQEEQV 67 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---------------HTCEEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---------------cCCeEEEECCCHHHHHHH
Confidence 57999999999888888889999999999999999987665544321 24579999996 578899
Q ss_pred HHHHHHhc---CCcEEEEeC
Q 044036 215 EIEFSRWS---TFNVSIYHG 231 (875)
Q Consensus 215 ~~E~~k~~---~~~v~v~~G 231 (875)
.+++.++. ++++.++.|
T Consensus 68 ~~el~~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 68 IKELRSLSSTMKIRAIPMQG 87 (620)
T ss_dssp HHHHHHHHHHSCCCEEECCC
T ss_pred HHHHHHHhhccCeEEEEEEC
Confidence 99988763 355554443
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.53 E-value=0.00079 Score=80.36 Aligned_cols=151 Identities=21% Similarity=0.282 Sum_probs=94.3
Q ss_pred hhhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-
Q 044036 132 SINCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV- 210 (875)
Q Consensus 132 ~i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL- 210 (875)
.++..|-+.|++||..++. ...-.|+.-++|+|||.+.+.++..+.. ...++||++|++.
T Consensus 185 ~~~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~----------------~~~~ILv~a~TN~A 245 (646)
T 4b3f_X 185 FFNTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVK----------------QGLKVLCCAPSNIA 245 (646)
T ss_dssp CSSTTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHH----------------TTCCEEEEESSHHH
T ss_pred ccCCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHh----------------CCCeEEEEcCchHH
Confidence 3456799999999998875 2223567778999999999998888753 3457999999865
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCh--------------------------------------------------hH---H
Q 044036 211 IQNWEIEFSRWSTFNVSIYHGPNR--------------------------------------------------DM---I 237 (875)
Q Consensus 211 l~qW~~E~~k~~~~~v~v~~G~~r--------------------------------------------------~~---~ 237 (875)
+.+...-+..... ++..+....+ .. .
T Consensus 246 vD~i~erL~~~~~-~ilRlG~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 324 (646)
T 4b3f_X 246 VDNLVERLALCKQ-RILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLL 324 (646)
T ss_dssp HHHHHHHHHHTTC-CEEECSCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHH
T ss_pred HHHHHHHHHhcCC-ceEEecchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 6666666654322 2221111000 00 0
Q ss_pred HHHH----------HhCCceEEEeecccccccc--cccccccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCC
Q 044036 238 LEKL----------EACGVEVLITSFDSYRIHG--SILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTI 305 (875)
Q Consensus 238 ~~~~----------~~~~~~VvItTy~~l~~~~--~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTP 305 (875)
...+ .....+|+++|........ ..+....|++||||||-.+..+ .++-.+....+++|-|=|
T Consensus 325 ~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~-----~~lipL~~~~~~ILVGD~ 399 (646)
T 4b3f_X 325 RKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEA-----SCWIPLLKARKCILAGDH 399 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHH-----HHTTTGGGSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchH-----HHHhhccccceEEEcCCc
Confidence 0000 0112467777766554332 3455678999999999766433 233344456678899988
Q ss_pred CC
Q 044036 306 MQ 307 (875)
Q Consensus 306 iq 307 (875)
-|
T Consensus 400 ~Q 401 (646)
T 4b3f_X 400 KQ 401 (646)
T ss_dssp TS
T ss_pred cc
Confidence 76
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.37 E-value=0.0017 Score=77.04 Aligned_cols=147 Identities=15% Similarity=0.186 Sum_probs=92.1
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~q 213 (875)
..|-+.|.+++..++. +.-.++--..|+|||.++..++..+... ...++||++|++. +.+
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~---------------~~~~ilv~a~tn~A~~~ 239 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ---------------GNGPVLVCAPSNIAVDQ 239 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS---------------SSCCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc---------------CCCeEEEEeCcHHHHHH
Confidence 4689999999998764 3445677789999999988888777521 3568999999865 455
Q ss_pred HHHHHHHhcCCcEEEEeCCChh------------------------------------------HHHHH-------HHhC
Q 044036 214 WEIEFSRWSTFNVSIYHGPNRD------------------------------------------MILEK-------LEAC 244 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~~G~~r~------------------------------------------~~~~~-------~~~~ 244 (875)
-...+.+. +.++..+.+..+. ..... ....
T Consensus 240 l~~~l~~~-~~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 318 (624)
T 2gk6_A 240 LTEKIHQT-GLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLM 318 (624)
T ss_dssp HHHHHHTT-TCCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCeEEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHh
Confidence 55555443 2222222111100 00000 0112
Q ss_pred CceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCC
Q 044036 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQ 307 (875)
Q Consensus 245 ~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiq 307 (875)
..+||++|...+.. ..+....|++||||||..+..+. ..+..+....++.|-|=|-|
T Consensus 319 ~~~vI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 319 NADVICCTCVGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp TCSEEEEETGGGGC--GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred cCCEEEEcChhhcc--hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhc
Confidence 45788888766542 23556789999999997765442 12222334568999998876
No 97
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.16 E-value=0.0028 Score=77.02 Aligned_cols=147 Identities=16% Similarity=0.192 Sum_probs=91.4
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchH-HH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVI-QN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl-~q 213 (875)
..|-+.|.++|..++. +.-.++--..|+|||.++..++..+... ...++||++|+... .+
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~---------------~~~~ilv~a~tn~A~~~ 415 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ---------------GNGPVLVCAPSNIAVDQ 415 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT---------------CSSCEEEEESSHHHHHH
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc---------------CCCcEEEEcCcHHHHHH
Confidence 4689999999998754 3345677789999999988888877531 35689999998754 44
Q ss_pred HHHHHHHhcCCcEEEEeCCChh------------------------------------------HHHHHH-------HhC
Q 044036 214 WEIEFSRWSTFNVSIYHGPNRD------------------------------------------MILEKL-------EAC 244 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~~G~~r~------------------------------------------~~~~~~-------~~~ 244 (875)
-.+.+... +.++..+.+..+. .....+ ...
T Consensus 416 l~~~l~~~-g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 494 (800)
T 2wjy_A 416 LTEKIHQT-GLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLM 494 (800)
T ss_dssp HHHHHHTT-TCCEEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CcceEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhc
Confidence 44444432 2222222111100 000000 012
Q ss_pred CceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCC
Q 044036 245 GVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQ 307 (875)
Q Consensus 245 ~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiq 307 (875)
..+||++|...+.. ..+....|++||||||..+..+. ..+..+....++.|-|=|-|
T Consensus 495 ~a~VI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 495 NADVICCTCVGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp HCSEEEEETGGGGC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred cCCEEEEchhhhCC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEeccccc
Confidence 34688888776543 23556789999999997764432 22333344578999998876
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.13 E-value=0.001 Score=77.95 Aligned_cols=132 Identities=20% Similarity=0.145 Sum_probs=85.1
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN 213 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q 213 (875)
...|-+.|++++..+.. ....++--..|+|||.++.+++..+.. ...+++++||+.....
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~----------------~g~~Vl~~ApT~~Aa~ 246 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAES----------------LGLEVGLCAPTGKAAR 246 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHH----------------TTCCEEEEESSHHHHH
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHh----------------cCCeEEEecCcHHHHH
Confidence 45788999999998764 455677788999999988888776632 3467999999987766
Q ss_pred HHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhc
Q 044036 214 WEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLEL 293 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l 293 (875)
...|.. ......+| ..+ + ... +.+... .-....+++|||||||.+.. ......+..+
T Consensus 247 ~L~e~~---~~~a~Tih--------~ll---~--~~~---~~~~~~--~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~ 303 (574)
T 3e1s_A 247 RLGEVT---GRTASTVH--------RLL---G--YGP---QGFRHN--HLEPAPYDLLIVDEVSMMGD--ALMLSLLAAV 303 (574)
T ss_dssp HHHHHH---TSCEEEHH--------HHT---T--EET---TEESCS--SSSCCSCSEEEECCGGGCCH--HHHHHHHTTS
T ss_pred HhHhhh---cccHHHHH--------HHH---c--CCc---chhhhh--hcccccCCEEEEcCccCCCH--HHHHHHHHhC
Confidence 655432 11111111 000 0 000 011111 11234689999999999843 3445556666
Q ss_pred cccceEEeecCCCCC
Q 044036 294 KTRNRIGLTGTIMQN 308 (875)
Q Consensus 294 ~~~~rllLTGTPiqN 308 (875)
....+++|.|-|-|.
T Consensus 304 ~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 304 PPGARVLLVGDTDQL 318 (574)
T ss_dssp CTTCEEEEEECTTSC
T ss_pred cCCCEEEEEeccccc
Confidence 778899999999874
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0048 Score=75.09 Aligned_cols=146 Identities=16% Similarity=0.207 Sum_probs=91.1
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~q 213 (875)
..|-+.|.++|..++. +.-.++--..|+|||.++..++..+... ...++||++|+.. +.+
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~---------------~~~~ILv~a~tn~A~d~ 419 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI---------------HKDRILVCAPSNVAVDH 419 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH---------------HCCCEEEEESSHHHHHH
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC---------------CCCeEEEEcCcHHHHHH
Confidence 4689999999987753 3335677789999999988888766421 3467999999876 455
Q ss_pred HHHHHHHhcCCcEEEEeCCChh-----------------------------------------HHHH-------HHHhCC
Q 044036 214 WEIEFSRWSTFNVSIYHGPNRD-----------------------------------------MILE-------KLEACG 245 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~~G~~r~-----------------------------------------~~~~-------~~~~~~ 245 (875)
-...+.+.+ .++..+.+..+. ..+. ......
T Consensus 420 l~~rL~~~g-~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~ 498 (802)
T 2xzl_A 420 LAAKLRDLG-LKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNK 498 (802)
T ss_dssp HHHHHHHTT-CCEEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhC-ccEEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcc
Confidence 555555432 222222111000 0000 000124
Q ss_pred ceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCC
Q 044036 246 VEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQ 307 (875)
Q Consensus 246 ~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiq 307 (875)
.+||++|...+.. ..+.. .|++||||||..+..+. ..+..+....+++|-|=|-|
T Consensus 499 a~VI~~T~~~~~~--~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 499 ADVVCCTCVGAGD--KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp CSEEEEETTGGGC--TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred CCEEEechhhcCh--HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCccc
Confidence 5789988876652 23444 89999999998875432 22333344578999998876
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.87 E-value=0.0049 Score=70.31 Aligned_cols=139 Identities=16% Similarity=0.168 Sum_probs=81.7
Q ss_pred hcccHHHHHHHHHHHHHhhCCC-CcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKH-GGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~-ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q 213 (875)
..|-+-|++++..+......+. ..+|--..|+|||..+.+++..+...+ ..++++++|+.....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~---------------~~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG---------------ETGIILAAPTHAAKK 88 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTT---------------CCCEEEEESSHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC---------------CceEEEecCcHHHHH
Confidence 3688999999998877666555 456777899999998888888775321 247999999876543
Q ss_pred HHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeecc---cccccccccccccccEEEEcCCccccCcccHHHHHH
Q 044036 214 WEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSFD---SYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMAC 290 (875)
Q Consensus 214 W~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy~---~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal 290 (875)
-..+ .....+..+|. .+ + +-...+. .+.. ...-....+++|||||+|.+.. ......+
T Consensus 89 ~l~~---~~~~~~~T~h~--------~~---~--~~~~~~~~~~~~~~-~~~~~~~~~~~iiiDE~~~~~~--~~~~~l~ 149 (459)
T 3upu_A 89 ILSK---LSGKEASTIHS--------IL---K--INPVTYEENVLFEQ-KEVPDLAKCRVLICDEVSMYDR--KLFKILL 149 (459)
T ss_dssp HHHH---HHSSCEEEHHH--------HH---T--EEEEECSSCEEEEE-CSCCCCSSCSEEEESCGGGCCH--HHHHHHH
T ss_pred HHHh---hhccchhhHHH--------Hh---c--cCcccccccchhcc-cccccccCCCEEEEECchhCCH--HHHHHHH
Confidence 2222 11111111110 00 0 0000000 0000 0011123579999999998732 2333334
Q ss_pred HhccccceEEeecCCCC
Q 044036 291 LELKTRNRIGLTGTIMQ 307 (875)
Q Consensus 291 ~~l~~~~rllLTGTPiq 307 (875)
..+....++++.|-|-|
T Consensus 150 ~~~~~~~~~~~vGD~~Q 166 (459)
T 3upu_A 150 STIPPWCTIIGIGDNKQ 166 (459)
T ss_dssp HHSCTTCEEEEEECTTS
T ss_pred HhccCCCEEEEECCHHH
Confidence 44456788999998876
No 101
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.42 E-value=0.011 Score=69.90 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH-HH
Q 044036 138 LEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW-EI 216 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW-~~ 216 (875)
-+.|+.++.-++. +...++.-..|+|||.++..++..+.... .....++++++|+...... .+
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~------------~~~~~~vll~APTg~AA~~L~e 214 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMA------------DGERCRIRLAAPTGKAAARLTE 214 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTC------------SSCCCCEEEEBSSHHHHHHHHH
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhh------------hcCCCeEEEEeCChhHHHHHHH
Confidence 4679999987653 56678888999999988777776654211 1134579999998765443 33
Q ss_pred HHHHhc---CCcEEEEeCCCh-hHHHHHHHhCCceEEEeecc--cccccccccccccccEEEEcCCccccCcccHHHHHH
Q 044036 217 EFSRWS---TFNVSIYHGPNR-DMILEKLEACGVEVLITSFD--SYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMAC 290 (875)
Q Consensus 217 E~~k~~---~~~v~v~~G~~r-~~~~~~~~~~~~~VvItTy~--~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal 290 (875)
.+..+. ++......+... .... ..++-.+.. .+... ......+++||||||+.+. .......+
T Consensus 215 ~~~~~~~~l~l~~~~~~~~~~~~~Ti-------h~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~--~~~~~~Ll 283 (608)
T 1w36_D 215 SLGKALRQLPLTDEQKKRIPEDASTL-------HRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LPMMSRLI 283 (608)
T ss_dssp HHTHHHHHSSCCSCCCCSCSCCCBTT-------TSCC-----------C--TTSCCSCSEEEECSGGGCB--HHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHhccchhhhhh-------HhhhccCCCchHHHhc--cCCCCCCCEEEEechhhCC--HHHHHHHH
Confidence 343321 111000000000 0000 000000000 01111 1122368999999999774 23455667
Q ss_pred HhccccceEEeecCCCCCCH
Q 044036 291 LELKTRNRIGLTGTIMQNKI 310 (875)
Q Consensus 291 ~~l~~~~rllLTGTPiqN~~ 310 (875)
..+....+++|.|=|-|--+
T Consensus 284 ~~l~~~~~liLvGD~~QL~~ 303 (608)
T 1w36_D 284 DALPDHARVIFLGDRDQLAS 303 (608)
T ss_dssp HTCCTTCEEEEEECTTSGGG
T ss_pred HhCCCCCEEEEEcchhhcCC
Confidence 77788899999998876544
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.86 E-value=0.013 Score=57.97 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=24.0
Q ss_pred cccEEEEcCCccccCcccHHHHHHHhc-cccceEEeecC
Q 044036 267 NWEIVIVDEAHRLKNEKSKLYMACLEL-KTRNRIGLTGT 304 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S~~~kal~~l-~~~~rllLTGT 304 (875)
++++|||||+|.+... ....+..+ .....+++||.
T Consensus 76 ~~dvviIDE~Q~~~~~---~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS---LFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCTT---HHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHHHCCCCEEEEee
Confidence 5799999999998321 44444433 34667888887
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.79 E-value=0.047 Score=60.29 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=86.8
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~q 213 (875)
..|.|||+..+..|.. .+-.++.-.-+.|||..+.+++.+... ......+++++|..- ...
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~--------------~~~g~~v~~vA~t~~qA~~ 223 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVC--------------FNKDKAVGILAHKGSMSAE 223 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHH--------------SSSSCEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHH--------------hCCCCeEEEEeCCHHHHHH
Confidence 4789999998876642 344677778899999987776655321 123457899999743 333
Q ss_pred HHHHHHHhc---C--Cc-EEEEeCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHH
Q 044036 214 WEIEFSRWS---T--FN-VSIYHGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLY 287 (875)
Q Consensus 214 W~~E~~k~~---~--~~-v~v~~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~ 287 (875)
+-+++..+. | +. ........... + ..+..+.+.+ .....+.....+++|+||+|.+++. ...+
T Consensus 224 vf~~i~~mi~~~P~ll~~~~~~~~~~~I~----f-~nGs~i~~ls-----a~~~slrG~~~~~viiDE~a~~~~~-~el~ 292 (385)
T 2o0j_A 224 VLDRTKQAIELLPDFLQPGIVEWNKGSIE----L-DNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNF-HDSW 292 (385)
T ss_dssp HHHHHHHHHHHSCTTTSCCEEEECSSEEE----E-TTSCEEEEEE-----CSHHHHHTSCCSEEEEESGGGSTTH-HHHH
T ss_pred HHHHHHHHHHhChHhhhhhhccCCccEEE----e-CCCCEEEEEE-----CCCCCccCCCCCEEEechhhhcCCC-HHHH
Confidence 445665543 2 11 01111100000 0 0111222221 1334566677899999999999862 2344
Q ss_pred HHHHhc-c--ccceEEeecCCCCCCHHHHHHHHh
Q 044036 288 MACLEL-K--TRNRIGLTGTIMQNKIMELYNLFD 318 (875)
Q Consensus 288 kal~~l-~--~~~rllLTGTPiqN~~~El~~Ll~ 318 (875)
.++... . ...++++++||-..+ -++.+..
T Consensus 293 ~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~ 324 (385)
T 2o0j_A 293 LAIQPVISSGRRSKIIITTTPNGLN--HFYDIWT 324 (385)
T ss_dssp HHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHH
T ss_pred HHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHH
Confidence 444332 2 346888889996553 4444443
No 104
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.16 E-value=0.018 Score=58.64 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=26.3
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS 208 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 208 (875)
++.-+||.|||..++.++..+.. ...+++++.|.
T Consensus 16 litG~mGsGKTT~ll~~~~r~~~----------------~g~kVli~~~~ 49 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRLHRLEY----------------ADVKYLVFKPK 49 (223)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH----------------TTCCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHh----------------cCCEEEEEEec
Confidence 46889999999999998887642 34568888774
No 105
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.14 E-value=0.055 Score=54.48 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=26.6
Q ss_pred EecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc
Q 044036 160 LGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS 209 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s 209 (875)
+.-+||.|||..++..+..+.. ...++||+.|.-
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~----------------~g~kVli~k~~~ 66 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQF----------------AKQHAIVFKPCI 66 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHH----------------TTCCEEEEECC-
T ss_pred EECCCCCcHHHHHHHHHHHHHH----------------CCCEEEEEEecc
Confidence 6789999999999988877642 356789998853
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.86 E-value=0.11 Score=61.18 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=82.9
Q ss_pred hcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-hHHH
Q 044036 135 CRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-VIQN 213 (875)
Q Consensus 135 ~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-Ll~q 213 (875)
..|.|||+..+..+.. .+-.++.-.-|.|||..+.+++...+.. .+...+++++|.. ....
T Consensus 162 ~~l~p~Q~~i~~~l~~----~r~~~i~~~Rq~GKS~~~a~~~l~~~~~--------------~~~~~i~~va~t~~qA~~ 223 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF--------------NKDKAVGILAHKGSMSAE 223 (592)
T ss_dssp CCCCHHHHHHHHHHHH----CSEEEEEECSSSCHHHHHHHHHHHHHHT--------------SSSCEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHhhcc----ccEEEEEEcCccChHHHHHHHHHHHHHh--------------CCCCeEEEEECCHHHHHH
Confidence 4789999998876632 3446777788999999876665544321 1345799999964 3334
Q ss_pred HHHHHHHhcC-----CcEEEE-eCCChhHHHHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHH
Q 044036 214 WEIEFSRWST-----FNVSIY-HGPNRDMILEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLY 287 (875)
Q Consensus 214 W~~E~~k~~~-----~~v~v~-~G~~r~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~ 287 (875)
+...+..+.. +..... .....-. + ..+..+...+ .....+.....+++|+||+|.+++.. ..+
T Consensus 224 ~~~~i~~~i~~~p~~~~~~~~~~~~~~i~----~-~nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~ 292 (592)
T 3cpe_A 224 VLDRTKQAIELLPDFLQPGIVEWNKGSIE----L-DNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSW 292 (592)
T ss_dssp HHHHHHHHHTTSCTTTSCCEEEECSSEEE----E-TTSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-HHH
T ss_pred HHHHHHHHHHhChHhhccccccCCccEEE----e-cCCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-HHH
Confidence 4456665532 110000 0100000 0 0121222111 22334556678999999999997742 455
Q ss_pred HHHHhc-c--ccceEEeecCCCCC
Q 044036 288 MACLEL-K--TRNRIGLTGTIMQN 308 (875)
Q Consensus 288 kal~~l-~--~~~rllLTGTPiqN 308 (875)
.++... . ...++++++||-..
T Consensus 293 ~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 293 LAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHHHHHHSSSSCCEEEEEECCCTT
T ss_pred HHHHHHhccCCCceEEEEeCCCCc
Confidence 555433 2 34788999999544
No 107
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.43 E-value=0.087 Score=53.61 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=25.8
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS 208 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 208 (875)
+..-+||.|||..++..+..... ...+++|+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~----------------~g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQI----------------AQYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT----------------TTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH----------------CCCeEEEEeec
Confidence 45778999999999888776632 45678888775
No 108
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.36 E-value=0.042 Score=61.53 Aligned_cols=106 Identities=13% Similarity=0.096 Sum_probs=66.2
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc-chHHHHHHHHHHhcCCcEEEEeCCChhHH
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS-SVIQNWEIEFSRWSTFNVSIYHGPNRDMI 237 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sLl~qW~~E~~k~~~~~v~v~~G~~r~~~ 237 (875)
++.-..|.|||.....++. ..+.|||+|+ .+...|++.+.+... .
T Consensus 165 ~I~G~aGsGKTt~I~~~~~---------------------~~~~lVlTpT~~aa~~l~~kl~~~~~---------~---- 210 (446)
T 3vkw_A 165 LVDGVPGCGKTKEILSRVN---------------------FEEDLILVPGRQAAEMIRRRANASGI---------I---- 210 (446)
T ss_dssp EEEECTTSCHHHHHHHHCC---------------------TTTCEEEESCHHHHHHHHHHHTTTSC---------C----
T ss_pred EEEcCCCCCHHHHHHHHhc---------------------cCCeEEEeCCHHHHHHHHHHhhhcCc---------c----
Confidence 4666889999987665431 1457999996 567889888754210 0
Q ss_pred HHHHHhCCceEEEeecccccccccccccccccEEEEcCCccccCcccHHHHHHHhccccceEEeecCCCC
Q 044036 238 LEKLEACGVEVLITSFDSYRIHGSILSEVNWEIVIVDEAHRLKNEKSKLYMACLELKTRNRIGLTGTIMQ 307 (875)
Q Consensus 238 ~~~~~~~~~~VvItTy~~l~~~~~~l~~~~w~~VIiDEAH~ikn~~S~~~kal~~l~~~~rllLTGTPiq 307 (875)
..-..-+.|++.+............++||||||..+ +.......+..+++ .+++|.|=|-|
T Consensus 211 ------~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~--~~~~l~~l~~~~~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 211 ------VATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML--HTGCVNFLVEMSLC-DIAYVYGDTQQ 271 (446)
T ss_dssp ------CCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS--CHHHHHHHHHHTTC-SEEEEEECTTS
T ss_pred ------ccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC--CHHHHHHHHHhCCC-CEEEEecCccc
Confidence 000123456665544433333345899999999877 22333333444444 89999999866
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.86 E-value=0.14 Score=50.84 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=26.5
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS 208 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 208 (875)
++.-+||.|||..++.++..+.. ...+++|+.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~----------------~g~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKI----------------AKQKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHH----------------TTCCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHH----------------CCCEEEEEEec
Confidence 45778999999999988876632 35678999876
No 110
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=93.61 E-value=0.15 Score=60.30 Aligned_cols=77 Identities=9% Similarity=0.089 Sum_probs=48.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEec--CCcccccCCCC--CCEE
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIST--RAGGLGLNLVS--ANRV 606 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt--~agg~GLNL~~--An~V 606 (875)
.+..+|||..+-..++.+...|. .+... ...+++..+|.+++++|. +.+. +|+++ ....+|+|+.+ +..|
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~--vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHG--TIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCC--EEEEETTSCC--------CCCCEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCc--EEEEEecCceeccccCCCCceEEE
Confidence 45568899888888888887776 23333 434445578999999999 4333 55664 58899999997 7799
Q ss_pred EEcCCCC
Q 044036 607 VIFDPNW 613 (875)
Q Consensus 607 I~~D~~W 613 (875)
|+.-.|+
T Consensus 521 iI~~lPf 527 (620)
T 4a15_A 521 ILAGLPF 527 (620)
T ss_dssp EESSCCC
T ss_pred EEEcCCC
Confidence 9988775
No 111
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=93.22 E-value=0.17 Score=59.94 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=48.7
Q ss_pred hhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-H
Q 044036 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-I 211 (875)
Q Consensus 133 i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l 211 (875)
+-..|-+.|+++|.. .....++--..|+|||.+.+.-+.+++...+ ....++|+|+++.. .
T Consensus 6 ~~~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~------------~~~~~iL~ltft~~aa 67 (647)
T 3lfu_A 6 LLDSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN------------CSPYSIMAVTFTNKAA 67 (647)
T ss_dssp HHTTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC------------CCGGGEEEEESSHHHH
T ss_pred hhhcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC------------CChhhEEEEeccHHHH
Confidence 345789999999962 2334455667899999999998888765432 13457999999765 4
Q ss_pred HHHHHHHHHh
Q 044036 212 QNWEIEFSRW 221 (875)
Q Consensus 212 ~qW~~E~~k~ 221 (875)
.+..+.+.+.
T Consensus 68 ~e~~~rl~~~ 77 (647)
T 3lfu_A 68 AEMRHRIGQL 77 (647)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 112
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.79 E-value=0.45 Score=51.37 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHHHHhhCCC---CcEEecCCCCchHHHHHHHHHHHhcC
Q 044036 137 LLEHQREGVKFLYKLYKNKH---GGILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~---ggILaDemGLGKTiqaiall~~l~~~ 182 (875)
++|+|.+.+..+...+..++ ..++.-+.|.|||..+.+++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 57889999988888777664 35778899999999999999988654
No 113
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.55 E-value=0.42 Score=50.60 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.2
Q ss_pred CcEEecCCCCchHHHHHHHHHHHh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.+|.-+.|+|||..+-++...+.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467888999999999988887764
No 114
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.09 E-value=1.3 Score=42.71 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhh-----CCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 139 EHQREGVKFLYKLYK-----NKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 139 pyQ~~gv~~l~~~~~-----~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.|.+++..+..... .+.+.+|.-+.|+|||..+-+++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468888887765543 345567788999999999888877663
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.96 E-value=1 Score=48.20 Aligned_cols=26 Identities=19% Similarity=-0.026 Sum_probs=21.0
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.+.+|.-+.|+|||..+-++...+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 35677889999999999888877663
No 116
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.50 E-value=0.34 Score=51.89 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=26.9
Q ss_pred cccEEEEcCCcccc-Cc-ccHHHHHHHhccccceEEeecCCCC
Q 044036 267 NWEIVIVDEAHRLK-NE-KSKLYMACLELKTRNRIGLTGTIMQ 307 (875)
Q Consensus 267 ~w~~VIiDEAH~ik-n~-~S~~~kal~~l~~~~rllLTGTPiq 307 (875)
...+|||||+|.+. .. ...+.+.+.......++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 56899999999995 21 2223344444456778888877643
No 117
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.27 E-value=0.59 Score=46.96 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=24.2
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS 209 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s 209 (875)
++.-+||.|||...+-.+..+.. ...+++|+-|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~----------------~g~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIY----------------AKQKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH----------------TTCCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHH----------------cCCceEEEEecc
Confidence 46778999999878777655432 245688888753
No 118
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.01 E-value=0.4 Score=52.97 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=35.9
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEF 218 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~ 218 (875)
..+|.+|.-++|+|||+.|=+++..+ ..+++.|..+.++..|..|-
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~-------------------~~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT-------------------DCKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH-------------------TCEEEEEEGGGGSCSSTTHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh-------------------CCCceEEEhHHhhccccchH
Confidence 35788999999999999999988765 44677777788877775443
No 119
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.91 E-value=0.43 Score=52.68 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=27.6
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW 214 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW 214 (875)
..+.+|.-+.|+|||..|-++...+ ..+++.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~-------------------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES-------------------NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT-------------------TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh-------------------cCcEEEeeHHHhhccc
Confidence 3577889999999999988876543 3456677666666554
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.84 E-value=1.3 Score=44.51 Aligned_cols=26 Identities=19% Similarity=-0.059 Sum_probs=20.9
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.+.+|.-+.|+|||..+-++...+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45667888999999999888877653
No 121
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.95 E-value=1.5 Score=41.77 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=21.2
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhc
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~ 181 (875)
..+.+|.-+.|+|||..+-++...+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345678889999999999888877643
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=88.94 E-value=0.77 Score=45.38 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=22.3
Q ss_pred cccEEEEcCCccccCcccHHHHHHHhc-cccceEEeecC
Q 044036 267 NWEIVIVDEAHRLKNEKSKLYMACLEL-KTRNRIGLTGT 304 (875)
Q Consensus 267 ~w~~VIiDEAH~ikn~~S~~~kal~~l-~~~~rllLTGT 304 (875)
+.++|+|||||-++. ....+..+ .....++++|-
T Consensus 91 ~~DvIlIDEaQFfk~----~ve~~~~L~~~gk~VI~~GL 125 (195)
T 1w4r_A 91 GVAVIGIDEGQFFPD----IVEFCEAMANAGKTVIVAAL 125 (195)
T ss_dssp TCSEEEESSGGGCTT----HHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEEchhhhHH----HHHHHHHHHHCCCeEEEEec
Confidence 368999999999932 33344444 44556777664
No 123
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.40 E-value=0.38 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=19.9
Q ss_pred CCcEEecCCCCchHHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l 179 (875)
.|.+|.-+.|+|||..|-++...+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 467889999999999988887654
No 124
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.38 E-value=2.5 Score=42.01 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 138 LEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
++.....+...+.........+|.-+.|.|||..+-+++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444443222222457888999999998888877654
No 125
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.34 E-value=1.7 Score=44.77 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=20.2
Q ss_pred hCCCCcEEecCCCCchHHHHHHHHHH
Q 044036 153 KNKHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 153 ~~~~ggILaDemGLGKTiqaiall~~ 178 (875)
..+.+.+|.-+.|+|||..+-++...
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 44567788999999999887776553
No 126
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=87.72 E-value=0.45 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.6
Q ss_pred CCcEEecCCCCchHHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l 179 (875)
.|.+|.-+.|+|||..|-+++..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 567889999999999998888765
No 127
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.56 E-value=2 Score=41.08 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=20.8
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHh
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.+.+|.-+.|+|||..+-+++..+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999988887764
No 128
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=87.00 E-value=0.34 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=20.8
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l 179 (875)
...+.+|.-+.|+|||..+-++...+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45677889999999999988876643
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.76 E-value=0.63 Score=43.45 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=20.2
Q ss_pred hCCCCcEEecCCCCchHHHHHHHHH
Q 044036 153 KNKHGGILGDDMGLGKTIQTIAFLA 177 (875)
Q Consensus 153 ~~~~ggILaDemGLGKTiqaiall~ 177 (875)
..+...+|.-+.|+|||..|-++..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4566788999999999998877654
No 130
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.63 E-value=3.2 Score=40.63 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=19.6
Q ss_pred CcEEecCCCCchHHHHHHHHHHHh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.+|.-+.|.|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 467888999999999888877653
No 131
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=86.62 E-value=3.5 Score=47.67 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=56.0
Q ss_pred HHHHHHHHHhh-cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeC-CCCHHHHHHHHHHhcCCCCceEEEEec--CCc
Q 044036 519 RALEKLMYSWA-SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDG-STPSNLRQSLVDDFNSSPSKQVFLIST--RAG 594 (875)
Q Consensus 519 ~~L~~LL~~~~-~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG-~~~~~eR~~~i~~F~~~~~~~v~LiSt--~ag 594 (875)
..+.+.|..+. ..+..+|||..+-..++.+.. ..++++ .+.| +++ +.++++.|+..++ -+|+++ ...
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v-~~q~~~~~---~~~~~~~~~~~~~--~vl~~v~gg~~ 449 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLPK-YVESEDSS---VEDLYSAISANNK--VLIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSE-EECCSSCC---HHHHHHHTTSSSS--CEEEEESSCCS
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcE-EEcCCCCC---HHHHHHHHHhcCC--eEEEEEeccee
Confidence 34444444432 345688999888888887776 235443 3444 334 4567888864333 255565 689
Q ss_pred ccccCCC-----CCCEEEEcCCCC
Q 044036 595 GLGLNLV-----SANRVVIFDPNW 613 (875)
Q Consensus 595 g~GLNL~-----~An~VI~~D~~W 613 (875)
.+|+|+. .+..||+.-.|+
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCC
T ss_pred cccccccccCCcceeEEEEEcCCC
Confidence 9999999 378888887775
No 132
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.52 E-value=2.3 Score=44.90 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.0
Q ss_pred CcEEecCCCCchHHHHHHHHHHHh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.+|.-+.|.|||..+-++...+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 467888999999999988887763
No 133
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.76 E-value=3.8 Score=45.89 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=20.8
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
..+.+|.-+.|+|||..+-++...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34667889999999999888877663
No 134
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.09 E-value=1.8 Score=45.48 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=20.6
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
..+.+|.-+.|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999988877655
No 135
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=84.85 E-value=1.5 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=20.1
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
..+.+|.-+.|+|||..+-++...+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3456788999999999988887654
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.53 E-value=4.8 Score=43.61 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHHhh-C--CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 138 LEHQREGVKFLYKLYK-N--KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~~-~--~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
++.+.+.+.-++..+. . ..+.+|.-+.|+|||..+-+++..+.
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556665554444332 2 23467888999999999888877653
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.00 E-value=3.6 Score=43.41 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=21.0
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l 179 (875)
.+.|.+|.-+.|+|||..+-++...+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45677889999999999988877654
No 138
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=84.00 E-value=2.2 Score=46.11 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=19.6
Q ss_pred cEEecCCCCchHHHHHHHHHHHh
Q 044036 158 GILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 158 gILaDemGLGKTiqaiall~~l~ 180 (875)
.+|.-+.|+|||..+-++...+.
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57888999999999988887764
No 139
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.95 E-value=1.8 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.4
Q ss_pred CCcEEecCCCCchHHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l 179 (875)
+|.+|.-+.|+|||..+-+++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 567889999999999998887754
No 140
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.65 E-value=3.5 Score=47.24 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=19.9
Q ss_pred CCcEEecCCCCchHHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l 179 (875)
.+.+|.-+.|+|||..+-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 466788999999999988887654
No 141
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.57 E-value=1.1 Score=50.16 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=34.4
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIE 217 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E 217 (875)
..+|.+|.-..|+|||+.|=+++..+ ..+++.|....++..|..|
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~-------------------~~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT-------------------DATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH-------------------TCEEEEEEGGGGCCCSSSH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc-------------------CCCeEEEEhHHhhcccCCH
Confidence 45788999999999999998888765 3457777777777666433
No 142
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=83.35 E-value=2.6 Score=44.65 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=20.8
Q ss_pred hCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 153 KNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 153 ~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
....+.+|.-++|+|||..|-++....
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 345677889999999999887766543
No 143
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=81.45 E-value=1.1 Score=50.58 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW 214 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW 214 (875)
.+|.+|.-+.|+|||..|-++...+ ...+++.|....++..|
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~------------------~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA------------------NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC------------------CSSEEEEECCC------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------------------CCCCEEEEeHHHHHhhh
Confidence 3567889999999999998887654 13356666666665555
No 144
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.45 E-value=1.1 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.1
Q ss_pred CCcEEecCCCCchHHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l 179 (875)
.+.+|.-+.|+|||..+-++...+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 347789999999999988887765
No 145
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.35 E-value=2 Score=47.68 Aligned_cols=44 Identities=30% Similarity=0.280 Sum_probs=34.8
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIE 217 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E 217 (875)
.+|.+|.-+.|+|||+.|-+++..+ ..+++.|....++..|..|
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~-------------------~~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT-------------------SATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH-------------------TCEEEEEESGGGCCSSSSH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh-------------------CCCEEEEEHHHhhhccCch
Confidence 4788999999999999999988765 4467778777777776544
No 146
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=79.63 E-value=3.9 Score=46.41 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=46.0
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcC
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFD 610 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D 610 (875)
.+.+|||.+.+....+.|...|...|+.....+... .+. ++ . +.|.......|.-+.....+|+-+
T Consensus 381 ~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~~----------~~~--~g-~-v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 381 FDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD----------EAS--DR-G-RYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCGG----------GCC--TT-C-EEEEESCCCSCEEETTTTEEEEEH
T ss_pred CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCchh----------hcC--CC-c-EEEEEcccccCcccCCCCEEEEEc
Confidence 477999999999999999999998898765543311 121 12 2 333445677899888888777754
No 147
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.43 E-value=4.3 Score=43.89 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHh---hCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 138 LEHQREGVKFLYKLY---KNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~---~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
++.+.+.+.-.+... ....+.+|.-+.|+|||..+-+++..+
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 344554444333322 234566788899999999988887765
No 148
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=79.01 E-value=7.7 Score=41.04 Aligned_cols=38 Identities=3% Similarity=0.022 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhCCC--CcEEecCCCCchHHHHHHHHHH
Q 044036 141 QREGVKFLYKLYKNKH--GGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 141 Q~~gv~~l~~~~~~~~--ggILaDemGLGKTiqaiall~~ 178 (875)
|.+.+..+......++ .-|+.-+.|.|||-.+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4555666666555554 3478889999999988887764
No 149
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.82 E-value=1.4 Score=49.18 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=33.7
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIE 217 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E 217 (875)
.+|.+|.-++|+|||+.|=+++..+ ..+++.|..+.++..|..|
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~-------------------~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI-------------------GANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-------------------TCEEEEEEGGGTCCSSSSH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh-------------------CCCEEEEehhhhccccchH
Confidence 4788899999999999999988765 3456777777777666433
No 150
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=78.06 E-value=14 Score=39.89 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=19.1
Q ss_pred CcEEecCCCCchHHHHHHHHHHH
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l 179 (875)
..+|.-+.|+|||..+-+++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46688899999999988877765
No 151
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=77.46 E-value=3 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=19.7
Q ss_pred CcEEecCCCCchHHHHHHHHHHHh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~ 180 (875)
..+|.-+.|+|||..+-++...+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc
Confidence 457888999999999988877663
No 152
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=77.09 E-value=1.6 Score=40.53 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=17.9
Q ss_pred hCCCCcEEecCCCCchHHHHHHH
Q 044036 153 KNKHGGILGDDMGLGKTIQTIAF 175 (875)
Q Consensus 153 ~~~~ggILaDemGLGKTiqaial 175 (875)
....+.+|.-+.|+|||..|-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 45667889999999999866543
No 153
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=76.70 E-value=3.7 Score=49.45 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=30.6
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW 214 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW 214 (875)
..|.+|.-+.|+|||+.|-+++..+ ..+++.|..+.++..|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~-------------------~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC-------------------QANFISIKGPELLTMW 551 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT-------------------TCEEEECCHHHHHTTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh-------------------CCceEEeccchhhccc
Confidence 4688999999999999888877643 3455666666677666
No 154
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=75.74 E-value=1.6 Score=46.11 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=20.3
Q ss_pred CCcEEecCCCCchHHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l 179 (875)
.|++|.-++|+|||..|-+++..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 567788899999999998887765
No 155
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=75.31 E-value=8.2 Score=46.47 Aligned_cols=99 Identities=10% Similarity=0.056 Sum_probs=69.7
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHH----HcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEE
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLI----RKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVF 587 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~----~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~ 587 (875)
+..|||..+..-.+......|.+++|.+.....+.-+...+. ..|+++..++|+++..+|...+....++.. . +
T Consensus 397 ~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~-~-I 474 (780)
T 1gm5_A 397 DVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQI-D-V 474 (780)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCC-C-E
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCC-C-E
Confidence 567899776555444444578899999998776655554444 348999999999999999999998887533 3 4
Q ss_pred EEecC-CcccccCCCCCCEEEEcCCC
Q 044036 588 LISTR-AGGLGLNLVSANRVVIFDPN 612 (875)
Q Consensus 588 LiSt~-agg~GLNL~~An~VI~~D~~ 612 (875)
+|+|. .....+++...+.||+=+.+
T Consensus 475 vVgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 475 VIGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EEECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EEECHHHHhhhhhccCCceEEecccc
Confidence 45554 34445677777777765444
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.58 E-value=2.2 Score=45.08 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.5
Q ss_pred cEEecCCCCchHHHHHHHHHHHh
Q 044036 158 GILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 158 gILaDemGLGKTiqaiall~~l~ 180 (875)
.+|.-+.|.|||..+-++...+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 67888999999999888887763
No 157
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=74.44 E-value=5.8 Score=37.07 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=20.4
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l 179 (875)
.+...+|.-+.|+|||..+-+++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556678899999999888877665
No 158
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=74.04 E-value=4.6 Score=44.00 Aligned_cols=46 Identities=15% Similarity=0.022 Sum_probs=32.8
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWE 215 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~ 215 (875)
.+.-.+|+-+.|+|||..++.++..+.. ..+++++|.......+|.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~----------------~g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK----------------AGGTCAFIDAEHALDPVY 118 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH----------------TTCCEEEEESSCCCCHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH----------------CCCeEEEEECCCChhHHH
Confidence 3444568889999999999998887642 245688887765555553
No 159
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.88 E-value=1.6 Score=47.47 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=20.3
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
..+.+|.-+.|+|||..+-+++..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4567889999999999988876643
No 160
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=72.69 E-value=3 Score=47.42 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=20.0
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~ 178 (875)
...|.+|.-+.|+|||..+-++...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 3457788999999999988877554
No 161
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=72.43 E-value=4.8 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.124 Sum_probs=18.8
Q ss_pred CcEEecCCCCchHHHHHHHHHHH
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l 179 (875)
+.||.-+.|+|||..+-++...+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 56889999999999887776654
No 162
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=71.96 E-value=9.2 Score=37.66 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=34.5
Q ss_pred cccccccccEEEEcCCccccC----cccHHHHHHHhccccceEEeecCCCCCCHHHHHHHHhhh
Q 044036 261 SILSEVNWEIVIVDEAHRLKN----EKSKLYMACLELKTRNRIGLTGTIMQNKIMELYNLFDWV 320 (875)
Q Consensus 261 ~~l~~~~w~~VIiDEAH~ikn----~~S~~~kal~~l~~~~rllLTGTPiqN~~~El~~Ll~~l 320 (875)
..+..-.+|+||+||.-..-+ +.......+..-....-++|||-- -+.+|..+.+++
T Consensus 114 ~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~---ap~~l~e~AD~V 174 (196)
T 1g5t_A 114 RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRG---CHRDILDLADTV 174 (196)
T ss_dssp HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSS---CCHHHHHHCSEE
T ss_pred HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCC---CcHHHHHhCcce
Confidence 345556799999999843211 223455555555566679999864 455555554443
No 163
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=71.74 E-value=13 Score=40.64 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=68.9
Q ss_pred CcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEE
Q 044036 511 DVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR---KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVF 587 (875)
Q Consensus 511 ~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~---~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~ 587 (875)
.+..|||-.+..-.+......+.++||.+.....+.-+...+.. .|+++..++|+++..+|...+..+..++ ..|+
T Consensus 43 apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~-~~Ii 121 (414)
T 3oiy_A 43 APTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD-YHIL 121 (414)
T ss_dssp SCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC-CSEE
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC-CCEE
Confidence 36778998754444444446788999999999988888888877 5889999999999988888888887652 2455
Q ss_pred EEecCCccc---ccCCCCCCEEEEc
Q 044036 588 LISTRAGGL---GLNLVSANRVVIF 609 (875)
Q Consensus 588 LiSt~agg~---GLNL~~An~VI~~ 609 (875)
+.+...... -+++...+.||+=
T Consensus 122 v~Tp~~l~~~l~~~~~~~~~~iViD 146 (414)
T 3oiy_A 122 VFSTQFVSKNREKLSQKRFDFVFVD 146 (414)
T ss_dssp EEEHHHHHHCHHHHTTCCCSEEEES
T ss_pred EECHHHHHHHHHHhccccccEEEEe
Confidence 555433311 1445556666553
No 164
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=71.73 E-value=1.3 Score=45.81 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=20.9
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
..|.+|.-+.|+|||..+-++...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4677888999999999998887654
No 165
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=71.35 E-value=9.2 Score=39.32 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=19.7
Q ss_pred CCcEEecCCCCchHHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l 179 (875)
.+.+|.-+.|+|||..|-++...+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 466788899999999988887754
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=71.33 E-value=8.7 Score=44.87 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH
Q 044036 143 EGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN 213 (875)
Q Consensus 143 ~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q 213 (875)
..+..+......+...+|.-+.|+|||..+-++...+..... ..............|.+.+||.....+
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~--~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETL--EDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSC--EEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccC--CeEEEeCCcccccCCcEEEEecchHHH
Confidence 334444444456778889999999999988877665422110 000001111223456778888665444
No 167
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=71.33 E-value=8.2 Score=40.19 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=20.2
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
..+.+|.-+.|+|||..+-++...+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4567889999999999988876643
No 168
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=70.99 E-value=5.8 Score=42.89 Aligned_cols=44 Identities=14% Similarity=0.002 Sum_probs=30.2
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNW 214 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW 214 (875)
+.-.+|+-+.|+|||..++.++..+.. ..++++++.-.....++
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~----------------~g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA----------------AGGIAAFIDAEHALDPE 104 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH----------------TTCCEEEEESSCCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh----------------CCCeEEEEECCCCcCHH
Confidence 344567888999999999998877642 24567777765444444
No 169
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=70.66 E-value=5.5 Score=45.04 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=20.1
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
..|.+|.-++|+|||..+=++....
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3577888999999999988776643
No 170
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=70.29 E-value=12 Score=41.78 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=17.8
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
+++-..|.|||.++..++.++.
T Consensus 104 livG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHHHH
Confidence 3555699999999999888774
No 171
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=69.53 E-value=2.5 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=20.2
Q ss_pred CcEEecCCCCchHHHHHHHHHHHh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~ 180 (875)
..+|.-+.|.|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 467888999999999988887764
No 172
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.24 E-value=23 Score=37.71 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHh-hCCC--CcEEecCCCCchHHHHHHHHHHHhc
Q 044036 141 QREGVKFLYKLY-KNKH--GGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 141 Q~~gv~~l~~~~-~~~~--ggILaDemGLGKTiqaiall~~l~~ 181 (875)
|...+..+.... ..+. ..+|.-+.|+|||..+-+++..++.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 445555555544 3332 3567889999999998888776653
No 173
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=67.52 E-value=23 Score=34.54 Aligned_cols=24 Identities=13% Similarity=-0.143 Sum_probs=18.5
Q ss_pred CCCCcEEecCCCCchHHHHHHHHH
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLA 177 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~ 177 (875)
.+.-.+|.-+.|.|||..+..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344446788999999998888776
No 174
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=66.83 E-value=17 Score=40.46 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=17.3
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
++.-..|.|||.++..++..+.
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 3556789999999888887763
No 175
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=65.56 E-value=33 Score=36.16 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=19.1
Q ss_pred CCcEEecCCCCchHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~ 178 (875)
.+.+|.-+.|+|||..+-++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46788999999999998887554
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=65.32 E-value=9.8 Score=37.00 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=20.7
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHh
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.+.+|.-+.|+|||..+-++...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667888999999999888887664
No 177
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=61.57 E-value=5.6 Score=47.10 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=46.8
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch-HHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV-IQNW 214 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL-l~qW 214 (875)
.|-|.|+++|.. .....++-...|+|||.+.+.-+.+++...+ .....+|+|+.+.- ....
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~------------~~~~~IL~lTfT~~Aa~em 63 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG------------YQARHIAAVTFTNKAAREM 63 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC------------CCGGGEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC------------CCHHHeEEEeccHHHHHHH
Confidence 477899999964 1334456678899999999888877764311 13467999998765 4445
Q ss_pred HHHHHHhc
Q 044036 215 EIEFSRWS 222 (875)
Q Consensus 215 ~~E~~k~~ 222 (875)
++.+.+..
T Consensus 64 ~~Rl~~~l 71 (673)
T 1uaa_A 64 KERVGQTL 71 (673)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHc
Confidence 55565543
No 178
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=61.28 E-value=22 Score=41.67 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 136 RLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 136 ~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
.+...|..++..+.... .+. .+|-.+-|-|||..+..++..+
T Consensus 175 ~~T~dQ~~al~~~~~~~-~~~-~vlta~RGRGKSa~lG~~~a~~ 216 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP-PGV-AAVTAARGRGKSALAGQLISRI 216 (671)
T ss_dssp SCCHHHHHHHHHHTTCC-SEE-EEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhh-hCe-EEEecCCCCCHHHHHHHHHHHH
Confidence 57788999998776533 222 3555568999996555555543
No 179
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=60.88 E-value=10 Score=40.68 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHh---hCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 138 LEHQREGVKFLYKLY---KNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~---~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
++.+.+.+.-.+... ..+...+|.-+.|+|||..+-.++..+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554333322 123456788899999999988877665
No 180
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=60.80 E-value=9.7 Score=45.51 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=47.7
Q ss_pred hhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHH-
Q 044036 134 NCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQ- 212 (875)
Q Consensus 134 ~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~- 212 (875)
-..|-|.|+++|.. .....++-...|+|||.+.+.-+.+++...+ .....+|+|+.+.-..
T Consensus 9 l~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~------------~~p~~IL~vTFTnkAA~ 70 (724)
T 1pjr_A 9 LAHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH------------VAPWNILAITFTNKAAR 70 (724)
T ss_dssp HTTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC------------CCGGGEEEEESSHHHHH
T ss_pred HhhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC------------CCHHHeEEEeccHHHHH
Confidence 34688999999964 2344566668899999999888888765321 1346799999976543
Q ss_pred HHHHHHHHh
Q 044036 213 NWEIEFSRW 221 (875)
Q Consensus 213 qW~~E~~k~ 221 (875)
..++.+...
T Consensus 71 Em~~Rl~~~ 79 (724)
T 1pjr_A 71 EMRERVQSL 79 (724)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 181
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=60.40 E-value=12 Score=33.70 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=37.9
Q ss_pred EEEEecchhH-------HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhc
Q 044036 535 ILLFSYSVRM-------LDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFN 579 (875)
Q Consensus 535 VLIFs~~~~~-------ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~ 579 (875)
|.||+..... ...+..+|..+|+.|..+|=++..+.|+.++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 5677765543 26899999999999999999999999999999984
No 182
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=60.30 E-value=67 Score=29.91 Aligned_cols=111 Identities=11% Similarity=0.075 Sum_probs=70.6
Q ss_pred CchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 515 CGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKG----YSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 515 s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g----~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
..+.....+|+.+....|.||+|.|.....++.|-..|.... ++.. +.|.... .... |+|+
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~-~~~~~~~-------------~~~P-V~L~ 86 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHN-LAGEGPR-------------GGAP-VEIA 86 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEE-ETTCSST-------------TCCS-EEEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCc-cCCCCCC-------------CCCC-EEEe
Confidence 357888999999999999999999999999999999998642 2332 3333210 1122 5555
Q ss_pred cCCcccccCCCCCCEEEEcCCCCCchhHHHhhhcccccCCcceEEEEEEeeCCCHHHHHHHHHHHHH
Q 044036 591 TRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVIVFRLLSAGSLEELVYTRQVYKQ 657 (875)
Q Consensus 591 t~agg~GLNL~~An~VI~~D~~WNp~~~~QaigR~~RiGQ~k~V~VyrLi~~gTiEE~I~~rq~~K~ 657 (875)
+... .+-..++.+|+++..+ |. +..+..|+ +-|+. ..-+.+-..|..+|.
T Consensus 87 ~~~~---~~~~~~~vLinL~~~~-p~-~~~~f~Rv-----------ie~v~-~d~~~~~~AR~r~k~ 136 (150)
T 3sxu_A 87 WPQK---RSSSRRDILISLRTSF-AD-FATAFTEV-----------VDFVP-YEDSLKQLARERYKA 136 (150)
T ss_dssp CTTS---CCCSCCSEEEECCSSC-CG-GGGGCSEE-----------EEEEC-SSGGGHHHHHHHHHH
T ss_pred CCCC---CCCCcCCEEEECCCCC-Cc-cccCCCEE-----------EEEeC-CCHHHHHHHHHHHHH
Confidence 4211 1123577999999886 32 22333332 44555 555666667776664
No 183
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=59.69 E-value=27 Score=42.56 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=21.3
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
..+.+|.-+.|+|||..+-+++..+.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 34678888999999999888887764
No 184
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=59.49 E-value=12 Score=40.58 Aligned_cols=27 Identities=22% Similarity=0.024 Sum_probs=21.8
Q ss_pred CCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 154 NKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 154 ~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
.+.-.+|+-..|+|||..++.++..+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444557888999999999999988764
No 185
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=58.61 E-value=17 Score=39.38 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=20.1
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
..+.+|.-++|+|||..|-++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3467789999999999988877654
No 186
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=58.34 E-value=7.6 Score=38.96 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=32.3
Q ss_pred CCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSR 220 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k 220 (875)
.-.+++-+.|.|||.-++.++..... ....+++++.-..-..+....+..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~---------------~~~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAE---------------EYGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH---------------HHCCCEEEEESSSCHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH---------------hcCCCceeecccCCHHHHHHHHHH
Confidence 33478999999999999988765421 124567887754444444444443
No 187
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=57.11 E-value=26 Score=30.47 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=44.7
Q ss_pred HHHHHHhhcCCCeEEEEec------chhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 522 EKLMYSWASKGDKILLFSY------SVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 522 ~~LL~~~~~~g~KVLIFs~------~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
.+.++++. ..++|+||+. +-........+|...|++|..++=......+..+.+.. ......+++|.
T Consensus 8 ~~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~-g~~tvP~ifi~ 80 (109)
T 3ipz_A 8 KDTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYS-NWPTFPQLYIG 80 (109)
T ss_dssp HHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH-TCSSSCEEEET
T ss_pred HHHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH-CCCCCCeEEEC
Confidence 33444433 4568999998 46788999999999999999988665555555554443 33344445554
No 188
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=56.97 E-value=23 Score=37.21 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=15.9
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~ 180 (875)
+.-..|.|||..+..++..+.
T Consensus 110 lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 110 LFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 344589999998888776663
No 189
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.79 E-value=4.5 Score=45.13 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=34.7
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIE 217 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E 217 (875)
.+|.+|.-++|+|||+.|=+++..+ ..+++.|....++..|..|
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~-------------------~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT-------------------NATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-------------------TCEEEEEEGGGGCSSCSSH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh-------------------CCCEEEEehhhhhhcccch
Confidence 4688899999999999998888765 4467788778877776433
No 190
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.35 E-value=8.8 Score=42.67 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=32.5
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWE 215 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~ 215 (875)
.+|.+|.-++|+|||..|=+++..+ ..+++.|....++..|.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~-------------------~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST-------------------KAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH-------------------TCEEEEEEGGGTCCSSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-------------------CCCeEEEecchhhcccc
Confidence 4678899999999999999988765 34567777677766654
No 191
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=55.03 E-value=31 Score=30.28 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=41.3
Q ss_pred CCCeEEEEec------chhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 531 KGDKILLFSY------SVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 531 ~g~KVLIFs~------~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
..++|+||+. +-........+|...|++|..+|=....+.|..+. .+.......+++|.
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~-~~~g~~tvP~ifi~ 78 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK-AYSSWPTYPQLYVS 78 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHH-HHHTCCSSCEEEET
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHH-HHHCCCCCCEEEEC
Confidence 4579999995 55678889999999999999998766655555544 44333444445554
No 192
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=54.95 E-value=43 Score=29.90 Aligned_cols=64 Identities=23% Similarity=0.443 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCCCeEEEEecc------hhHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHhcCCCCc-eEEE
Q 044036 519 RALEKLMYSWASKGDKILLFSYS------VRMLDILEKFLIRKGY-SFSRLDGSTPSNLRQSLVDDFNSSPSK-QVFL 588 (875)
Q Consensus 519 ~~L~~LL~~~~~~g~KVLIFs~~------~~~ld~L~~~L~~~g~-~~~~ldG~~~~~eR~~~i~~F~~~~~~-~v~L 588 (875)
+.+.+++.. ++|+||+.. -.......+.|...|+ +|..++=....+-|+.+ ..+...+.. +||+
T Consensus 11 e~i~~~i~~-----~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l-~~~sg~~TvPqIFI 82 (118)
T 2wul_A 11 EQLDALVKK-----DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGI-KDYSNWPTIPQVYL 82 (118)
T ss_dssp HHHHHHHHH-----SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHH-HHHHTCCSSCEEEE
T ss_pred HHHHHHHhc-----CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHH-HHhccCCCCCeEeE
Confidence 345666654 689999875 3467778888998998 58888776666555554 445444444 4444
No 193
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=54.27 E-value=18 Score=30.60 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=44.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCC---CCceEEEEecCCcccccCCCCCCEEE
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSS---PSKQVFLISTRAGGLGLNLVSANRVV 607 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~---~~~~v~LiSt~agg~GLNL~~An~VI 607 (875)
.|..|..++.....++.+ ....+....+|-.++...-..++...+.. +...+++++...... ....+...-
T Consensus 24 ~g~~v~~~~~~~~~~~~l----~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~ 97 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQL----DLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASA 97 (119)
T ss_dssp TTCEEEEESCHHHHHHHH----HHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSE
T ss_pred CCcEEEEecCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHH
Confidence 456666665544444443 33467777777655432223334433322 344556666543322 221111122
Q ss_pred EcCCCCCchhHHHhhhcccc
Q 044036 608 IFDPNWNPAQDLQAQDRSFR 627 (875)
Q Consensus 608 ~~D~~WNp~~~~QaigR~~R 627 (875)
++.-|.++....+++.++.+
T Consensus 98 ~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 98 ILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp ECSSCSTTHHHHHHHHTTCC
T ss_pred hccCCCCHHHHHHHHHHHhc
Confidence 33446777777777766643
No 194
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=53.89 E-value=37 Score=42.81 Aligned_cols=97 Identities=2% Similarity=0.016 Sum_probs=67.5
Q ss_pred CcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceE
Q 044036 511 DVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR----KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQV 586 (875)
Q Consensus 511 ~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v 586 (875)
....+||..+....+-.....|.+++|.+..+..+.-....+.. .++.+..++|..+..++...+.....+.. .|
T Consensus 631 ~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~-dI 709 (1151)
T 2eyq_A 631 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI-DI 709 (1151)
T ss_dssp CCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCC-SE
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCC-CE
Confidence 35678998776554444456788999999998877666555543 46889999999999999999988877533 44
Q ss_pred EEEecCCcccccCCCCCCEEEE
Q 044036 587 FLISTRAGGLGLNLVSANRVVI 608 (875)
Q Consensus 587 ~LiSt~agg~GLNL~~An~VI~ 608 (875)
++.+.......+++...+.||+
T Consensus 710 vV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 710 LIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp EEECTHHHHSCCCCSSEEEEEE
T ss_pred EEECHHHHhCCccccccceEEE
Confidence 5544444444566655555444
No 195
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=52.85 E-value=33 Score=43.00 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=62.2
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEE
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR---KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFL 588 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~---~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~L 588 (875)
+..|||-.+..-.+......+.++||.+..+..+.-+...|.. .|+.+..++|+++..+|...+..+..+. ..|++
T Consensus 101 pTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~-~~IlV 179 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD-YHILV 179 (1104)
T ss_dssp STTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSC-CSEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC-CCEEE
Confidence 6678998866666555557888999999999998888888887 5789999999999888888888887752 23455
Q ss_pred Eec
Q 044036 589 IST 591 (875)
Q Consensus 589 iSt 591 (875)
.++
T Consensus 180 ~Tp 182 (1104)
T 4ddu_A 180 FST 182 (1104)
T ss_dssp EEH
T ss_pred ECH
Confidence 444
No 196
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=52.44 E-value=44 Score=29.76 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=40.9
Q ss_pred CCeEEEEecc------hhHHHHHHHHHHHcCCc---EEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 532 GDKILLFSYS------VRMLDILEKFLIRKGYS---FSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 532 g~KVLIFs~~------~~~ld~L~~~L~~~g~~---~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
.++|+||+.. -........+|...|+. |..++=....+.|+.+.... ......+++|.
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~s-g~~tvP~vfI~ 81 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFS-EWPTIPQLYVN 81 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHH-TCCSSCEEEET
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHh-CCCCCCeEEEC
Confidence 5689999984 56788999999999998 88888766666555554443 33444445554
No 197
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=50.74 E-value=37 Score=45.02 Aligned_cols=52 Identities=13% Similarity=-0.020 Sum_probs=36.5
Q ss_pred hCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHHHHhc
Q 044036 153 KNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEFSRWS 222 (875)
Q Consensus 153 ~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~~k~~ 222 (875)
..+.+.+|.-+.|+|||..|++++..... ..++++++.....+.+-. ..+|+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~----------------~G~~v~Fi~~e~~~~~l~--a~~~G 1476 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQR----------------EGKTCAFIDAEHALDPIY--ARKLG 1476 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT----------------TTCCEEEECTTSCCCHHH--HHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH----------------cCCcEEEEEcccccCHHH--HHHcC
Confidence 34667789999999999999999887642 355678888765543322 44553
No 198
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=50.23 E-value=22 Score=38.37 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=27.6
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHH
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQN 213 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~q 213 (875)
+|.-+.|.|||..++.++..+.. ..++++.|.......+
T Consensus 65 ~I~GppGsGKSTLal~la~~~~~----------------~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 65 EIFGQESSGKTTLALHAIAEAQK----------------MGGVAAFIDAEHALDP 103 (356)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHH----------------TTCCEEEEESSCCCCH
T ss_pred EEECCCCCCHHHHHHHHHHHHHh----------------cCCeEEEEecccccch
Confidence 46678999999999888877632 3456788877554433
No 199
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=50.05 E-value=54 Score=29.07 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCCCeEEEEec------chhHHHHHHHHHHHcCCc-EEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 520 ALEKLMYSWASKGDKILLFSY------SVRMLDILEKFLIRKGYS-FSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 520 ~L~~LL~~~~~~g~KVLIFs~------~~~~ld~L~~~L~~~g~~-~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
.+.+++.. ++|+||+. +-........+|...|++ |..++=....+.|+.+. .+.......+++|.
T Consensus 12 ~v~~~i~~-----~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~-~~tg~~tvP~vfI~ 83 (118)
T 2wem_A 12 QLDALVKK-----DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIK-DYSNWPTIPQVYLN 83 (118)
T ss_dssp HHHHHHHH-----SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHH-HHHTCCSSCEEEET
T ss_pred HHHHHhcc-----CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHH-HHhCCCCcCeEEEC
Confidence 45555543 58999998 466788999999999995 99988776666555544 44333444455554
No 200
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=49.85 E-value=17 Score=43.66 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.9
Q ss_pred cEEecCCCCchHHHHHHHHHHHh
Q 044036 158 GILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 158 gILaDemGLGKTiqaiall~~l~ 180 (875)
.+|.-++|+|||..|-++...+.
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 67888999999999998887764
No 201
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=49.73 E-value=48 Score=37.54 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=18.9
Q ss_pred CCcEEecCCCCchHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~ 178 (875)
.|.+|.-+.|+|||..+=++...
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999988776654
No 202
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=49.08 E-value=74 Score=27.09 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=43.5
Q ss_pred HHHHhhcCCCeEEEEec------chhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEE
Q 044036 524 LMYSWASKGDKILLFSY------SVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLI 589 (875)
Q Consensus 524 LL~~~~~~g~KVLIFs~------~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~Li 589 (875)
.+..... ..+|+||+. +-.....+..+|...|+.|..++=......+..+...+.. ....++++
T Consensus 9 ~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~-~~vP~v~i 78 (105)
T 2yan_A 9 RLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW-PTYPQLYV 78 (105)
T ss_dssp HHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC-CSSCEEEE
T ss_pred HHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC-CCCCeEEE
Confidence 3344333 347999985 4567888999999999999999887776666666665543 33334444
No 203
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=47.42 E-value=17 Score=36.69 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.1
Q ss_pred CcEEecCCCCchHHHHHHHHHHHhc
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~~ 181 (875)
..++.-..|.|||..++.+...+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4578889999999999999888753
No 204
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=47.12 E-value=62 Score=27.30 Aligned_cols=57 Identities=7% Similarity=0.007 Sum_probs=42.0
Q ss_pred CeEEEEecch-hHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEE
Q 044036 533 DKILLFSYSV-RMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLI 589 (875)
Q Consensus 533 ~KVLIFs~~~-~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~Li 589 (875)
.+|.||+... ........+|...|++|..+|=....+.|+.+.+.-+......+++|
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i 61 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF 61 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE
Confidence 3688998654 46788899999999999999988888777776665433334455555
No 205
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=47.00 E-value=20 Score=37.86 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=21.9
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.+.+|.-++|+|||..+.++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999998888764
No 206
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=46.16 E-value=50 Score=36.08 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=62.5
Q ss_pred CcccCchHHHHHHHHHHhh-cCCCeEEEEecchhHHHHHHHHHHHc-CC---cEEEEeCCCCHHHHHHHHHHhcCCCCce
Q 044036 511 DVKSCGKMRALEKLMYSWA-SKGDKILLFSYSVRMLDILEKFLIRK-GY---SFSRLDGSTPSNLRQSLVDDFNSSPSKQ 585 (875)
Q Consensus 511 ~~~~s~Kl~~L~~LL~~~~-~~g~KVLIFs~~~~~ld~L~~~L~~~-g~---~~~~ldG~~~~~eR~~~i~~F~~~~~~~ 585 (875)
.+..+||--....++.... ..+.++||.+.....+.-....+... +. .+..++|+....++...... ..
T Consensus 30 ~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~------~~ 103 (494)
T 1wp9_A 30 LPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR------AK 103 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH------CS
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC------CC
Confidence 4667899776666655443 46889999999988777666666554 66 89999999998776655432 24
Q ss_pred EEEEecCCccc-----ccCCCCCCEEEEcC
Q 044036 586 VFLISTRAGGL-----GLNLVSANRVVIFD 610 (875)
Q Consensus 586 v~LiSt~agg~-----GLNL~~An~VI~~D 610 (875)
|++.+...... .+++...+.||+=+
T Consensus 104 ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 133 (494)
T 1wp9_A 104 VIVATPQTIENDLLAGRISLEDVSLIVFDE 133 (494)
T ss_dssp EEEECHHHHHHHHHTTSCCTTSCSEEEEET
T ss_pred EEEecHHHHHHHHhcCCcchhhceEEEEEC
Confidence 56655543321 34566666666633
No 207
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=46.13 E-value=58 Score=30.60 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=38.2
Q ss_pred CCCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCCC----hhHHHHHHHhCCceEEEee
Q 044036 198 KKGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGPN----RDMILEKLEACGVEVLITS 252 (875)
Q Consensus 198 ~~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~~----r~~~~~~~~~~~~~VvItT 252 (875)
..+++||.|+..- +......+.. .+..+..+||.- +....+.+..+...|+|+|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT 91 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQ-DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 91 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT-TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 3568999999754 3444444443 356888999973 4566777788888999988
No 208
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=45.88 E-value=30 Score=30.81 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhhcCC-CeEEEEec-chhHHHHHHHHHHHcCCcEEEEeCCCC
Q 044036 517 KMRALEKLMYSWASKG-DKILLFSY-SVRMLDILEKFLIRKGYSFSRLDGSTP 567 (875)
Q Consensus 517 Kl~~L~~LL~~~~~~g-~KVLIFs~-~~~~ld~L~~~L~~~g~~~~~ldG~~~ 567 (875)
++..+...+..+. .+ .+|||||. .-.........|...|+++..++|++.
T Consensus 74 ~~~~~~~~~~~~~-~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 74 KLKDIYLQAAELA-LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp GHHHHHHHHHHHH-TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cHHHHHHHHHHhc-cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3444555555543 44 89999994 555566778888999999999999864
No 209
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=45.42 E-value=53 Score=39.16 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
..+.+|.-+.|+|||..+-++...+.
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999888877653
No 210
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=45.00 E-value=1.3e+02 Score=29.07 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=45.5
Q ss_pred cccCchHHHH-HHHHHHhhc--CCCeEEEEecchhHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHH
Q 044036 512 VKSCGKMRAL-EKLMYSWAS--KGDKILLFSYSVRMLDILEKFLIRK-----GYSFSRLDGSTPSNLRQSLVDD 577 (875)
Q Consensus 512 ~~~s~Kl~~L-~~LL~~~~~--~g~KVLIFs~~~~~ld~L~~~L~~~-----g~~~~~ldG~~~~~eR~~~i~~ 577 (875)
+..+||--.. .-++..+.. .+.++||.+.....+.-+...+... ++.+..+.|+.+..++...+..
T Consensus 59 ~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 132 (220)
T 1t6n_A 59 KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 132 (220)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH
T ss_pred CCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc
Confidence 5678997543 334444332 2348999999988877777666653 7899999999987666555543
No 211
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=44.94 E-value=69 Score=27.65 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=40.8
Q ss_pred EEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCC
Q 044036 535 ILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSS 581 (875)
Q Consensus 535 VLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~ 581 (875)
.+|||.-...|.-|..-++..|+.+..+........|.+.+..|...
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 57889888888888888888999999999988888888889999764
No 212
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=43.83 E-value=72 Score=27.63 Aligned_cols=91 Identities=10% Similarity=-0.091 Sum_probs=50.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcC---CCCceEEEEecCCcccccCCC--CCCE
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNS---SPSKQVFLISTRAGGLGLNLV--SANR 605 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~---~~~~~v~LiSt~agg~GLNL~--~An~ 605 (875)
.+..|..++.....+..+ ....+.+..+|-.++...-.+++...+. .+...|+++|......-.... +|+.
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 566777666655555443 4457888888876654444455555543 234567777754322112211 1333
Q ss_pred EEEcCCCCCchhHHHhhhcccc
Q 044036 606 VVIFDPNWNPAQDLQAQDRSFR 627 (875)
Q Consensus 606 VI~~D~~WNp~~~~QaigR~~R 627 (875)
+ +--|+++....+++.++.+
T Consensus 102 ~--l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 102 Y--LVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp E--EESSCCHHHHHHHHHHHHH
T ss_pred E--EeccCCHHHHHHHHHHHHh
Confidence 3 3347788888888877754
No 213
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=43.55 E-value=86 Score=29.02 Aligned_cols=54 Identities=13% Similarity=0.262 Sum_probs=38.2
Q ss_pred CCCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCCC----hhHHHHHHHhCCceEEEee
Q 044036 198 KKGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGPN----RDMILEKLEACGVEVLITS 252 (875)
Q Consensus 198 ~~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~~----r~~~~~~~~~~~~~VvItT 252 (875)
..+++||.|+..- +......+.. .+..+..+||.- +....+.+..+...|+|+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDD-LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 3567999999754 4444444444 357889999973 4566777788888999988
No 214
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=43.37 E-value=74 Score=29.90 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=38.3
Q ss_pred CCCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCCC----hhHHHHHHHhCCceEEEee
Q 044036 198 KKGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGPN----RDMILEKLEACGVEVLITS 252 (875)
Q Consensus 198 ~~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~~----r~~~~~~~~~~~~~VvItT 252 (875)
..+++||.|+..- +......+.. .+..+..+||.- +....+.+..+...|+|+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVE-QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 3568999999754 4444444444 357888999873 4556777788888999988
No 215
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=42.37 E-value=1.1e+02 Score=29.97 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=18.7
Q ss_pred CCcEEecCCCCchHHHHHHHHHHH
Q 044036 156 HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 156 ~ggILaDemGLGKTiqaiall~~l 179 (875)
.-.+|.-+.|.|||..+..++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 334577789999999998888754
No 216
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=42.34 E-value=56 Score=27.57 Aligned_cols=88 Identities=13% Similarity=0.137 Sum_probs=38.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcC-CCCceEEEEecCCcccccCCC--CCCEEEE
Q 044036 532 GDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNS-SPSKQVFLISTRAGGLGLNLV--SANRVVI 608 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~-~~~~~v~LiSt~agg~GLNL~--~An~VI~ 608 (875)
|..|..++.....+..+ ....+....+|-.++...-.+++...+. .+...++++|...... .... +|+..+
T Consensus 25 ~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l- 98 (116)
T 3a10_A 25 GYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV- 98 (116)
T ss_dssp TCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE-
T ss_pred CCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE-
Confidence 55555444443333332 3345666777655443222233333321 2334555555432211 1111 133222
Q ss_pred cCCCCCchhHHHhhhccc
Q 044036 609 FDPNWNPAQDLQAQDRSF 626 (875)
Q Consensus 609 ~D~~WNp~~~~QaigR~~ 626 (875)
.-|+++....+++.++.
T Consensus 99 -~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 99 -VKSFNFDELKEKVKKLL 115 (116)
T ss_dssp -ECCSSTHHHHHHHHHHT
T ss_pred -ECCCCHHHHHHHHHHHh
Confidence 34566666666665543
No 217
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=42.08 E-value=95 Score=30.46 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=46.2
Q ss_pred cccCchHHH-HHHHHHHhh--cCCCeEEEEecchhHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHH
Q 044036 512 VKSCGKMRA-LEKLMYSWA--SKGDKILLFSYSVRMLDILEKFLIRK-----GYSFSRLDGSTPSNLRQSL 574 (875)
Q Consensus 512 ~~~s~Kl~~-L~~LL~~~~--~~g~KVLIFs~~~~~ld~L~~~L~~~-----g~~~~~ldG~~~~~eR~~~ 574 (875)
+..+||--. +.-++..+. ..+.++||.+.....+.-+...+... ++.+..+.|+.+..++...
T Consensus 69 ~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 139 (230)
T 2oxc_A 69 KSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR 139 (230)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh
Confidence 567899765 556666653 24579999999988887777777653 7888999999887665443
No 218
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=42.00 E-value=63 Score=34.16 Aligned_cols=21 Identities=24% Similarity=0.080 Sum_probs=15.8
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~ 180 (875)
+.-..|.|||..+..++..+.
T Consensus 110 ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 110 LVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp EESSTTSSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 334599999998888776663
No 219
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=41.07 E-value=14 Score=44.57 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=19.4
Q ss_pred CCCcEEecCCCCchHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~ 178 (875)
.+|.+|.-..|+|||..|=+++..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999988776643
No 220
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=40.80 E-value=12 Score=36.92 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=16.4
Q ss_pred EEecCCCCchHHHHHHHHHHH
Q 044036 159 ILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l 179 (875)
++--.+|+|||..++..+...
T Consensus 9 l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 9 LITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEECCTTSSHHHHHHHHHHHC
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 456688999999988876553
No 221
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=40.47 E-value=1.4e+02 Score=29.45 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=45.3
Q ss_pred cccCchHHH-HHHHHHHhh-------cCCCeEEEEecchhHHHHHHHH----HHHcCCcEEEEeCCCCHHHHHHHHHH
Q 044036 512 VKSCGKMRA-LEKLMYSWA-------SKGDKILLFSYSVRMLDILEKF----LIRKGYSFSRLDGSTPSNLRQSLVDD 577 (875)
Q Consensus 512 ~~~s~Kl~~-L~~LL~~~~-------~~g~KVLIFs~~~~~ld~L~~~----L~~~g~~~~~ldG~~~~~eR~~~i~~ 577 (875)
+..|||--. +.-++..+. ..+.++||.+.....+.-+... +...++.+..+.|+.+.......+..
T Consensus 74 pTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 151 (242)
T 3fe2_A 74 QTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER 151 (242)
T ss_dssp CTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC
Confidence 567899654 555555443 2467899999988766555444 44568999999999987766555543
No 222
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=40.23 E-value=23 Score=39.55 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHhhCC----CCcEEecCCCCchHHHHHHHHHHH
Q 044036 138 LEHQREGVKFLYKLYKNK----HGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 138 ~pyQ~~gv~~l~~~~~~~----~ggILaDemGLGKTiqaiall~~l 179 (875)
.+..++.+..+...+..+ +|.+|.-++|+|||..|-++...+
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 42 QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 344555444444444333 577899999999999999888775
No 223
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=39.66 E-value=65 Score=36.44 Aligned_cols=21 Identities=19% Similarity=0.003 Sum_probs=16.6
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~ 180 (875)
++-..|.|||..+..++.++.
T Consensus 106 ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 106 FVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EECSTTSSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 444579999999999887764
No 224
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=39.40 E-value=92 Score=30.38 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=38.1
Q ss_pred CCCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCC----ChhHHHHHHHhCCceEEEee
Q 044036 198 KKGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGP----NRDMILEKLEACGVEVLITS 252 (875)
Q Consensus 198 ~~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~----~r~~~~~~~~~~~~~VvItT 252 (875)
..+++||.|+..- +......+.. .++.+..+||. .+......+..+...|+|+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT 88 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLR-LGHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT 88 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHH-HTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 3568999999754 3333434443 35788889997 34566777888888999988
No 225
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=39.36 E-value=37 Score=29.38 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcC---CCCceEEEEecCCcc
Q 044036 519 RALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNS---SPSKQVFLISTRAGG 595 (875)
Q Consensus 519 ~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~---~~~~~v~LiSt~agg 595 (875)
..|..+|.. .|..|..++.....++.+ ....+....+|-.++...-.+++...+. .+...|+++|.....
T Consensus 17 ~~l~~~L~~---~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 17 ETFKELLEM---LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp HHHHHHHHH---TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred HHHHHHHHH---cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcch
Confidence 345555554 355676666555544443 4467888888876654444445555443 345567777754332
Q ss_pred cccCCC--CCCEEEEcCCCCCchhHHHhhhcccccCC
Q 044036 596 LGLNLV--SANRVVIFDPNWNPAQDLQAQDRSFRFGQ 630 (875)
Q Consensus 596 ~GLNL~--~An~VI~~D~~WNp~~~~QaigR~~RiGQ 630 (875)
.-.... +|+. ++--|.++....+++.++++-++
T Consensus 90 ~~~~~~~~g~~~--~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 90 DLGKEACELFDF--YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp TCCHHHHHHCSE--EEESSCCHHHHHHHHHHHC----
T ss_pred hHHHHHHHhhHH--heeCCCCHHHHHHHHHHhhccCC
Confidence 211111 1343 33457888888888888776544
No 226
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=38.74 E-value=30 Score=29.98 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCC
Q 044036 521 LEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTP 567 (875)
Q Consensus 521 L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~ 567 (875)
|.+.+..+ ..+.+|+|||..-.........|...|+++..++|++.
T Consensus 45 l~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 33344433 45678999999877777888899999999999999854
No 227
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=38.72 E-value=68 Score=39.97 Aligned_cols=78 Identities=12% Similarity=0.170 Sum_probs=58.7
Q ss_pred CcccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHH----cCC----cEEEEeCCCCHHHHHHHHHHhcCCC
Q 044036 511 DVKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIR----KGY----SFSRLDGSTPSNLRQSLVDDFNSSP 582 (875)
Q Consensus 511 ~~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~----~g~----~~~~ldG~~~~~eR~~~i~~F~~~~ 582 (875)
.+..|||--++.-++..+...+.++||.+.....+.-+...+.. .++ .+..++|+++..++....+.+.+
T Consensus 78 apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-- 155 (1054)
T 1gku_B 78 APTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-- 155 (1054)
T ss_dssp CCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--
T ss_pred cCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--
Confidence 36778998777777777777888999999998877666665553 467 88999999998888777777766
Q ss_pred CceEEEEec
Q 044036 583 SKQVFLIST 591 (875)
Q Consensus 583 ~~~v~LiSt 591 (875)
..|++.+.
T Consensus 156 -~~IlV~TP 163 (1054)
T 1gku_B 156 -FKIVITTT 163 (1054)
T ss_dssp -CSEEEEEH
T ss_pred -CCEEEEcH
Confidence 33455554
No 228
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=38.26 E-value=1.1e+02 Score=28.26 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=38.3
Q ss_pred CCCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCCC----hhHHHHHHHhCCceEEEeec
Q 044036 198 KKGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGPN----RDMILEKLEACGVEVLITSF 253 (875)
Q Consensus 198 ~~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~~----r~~~~~~~~~~~~~VvItTy 253 (875)
..+++||.|+..- +......+.. .+..+..+||.- +......+..+...|+|+|-
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRN-DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3567999999743 4444444444 356788899873 45567777888889999883
No 229
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=38.25 E-value=1.5e+02 Score=29.56 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=55.0
Q ss_pred cccCchHHH-HHHHHHHhhc--CCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhcCCCCc
Q 044036 512 VKSCGKMRA-LEKLMYSWAS--KGDKILLFSYSVRMLDILEKFLIR----KGYSFSRLDGSTPSNLRQSLVDDFNSSPSK 584 (875)
Q Consensus 512 ~~~s~Kl~~-L~~LL~~~~~--~g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~ 584 (875)
+..+||--. +.-++..+.. .+.++||.+.....+.-+...+.. .++.+..+.|+.+..+....+. .+ .
T Consensus 88 ~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~--~ 162 (249)
T 3ber_A 88 ETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA---KK--P 162 (249)
T ss_dssp CTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH---TC--C
T ss_pred CCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc---CC--C
Confidence 567899654 4444444433 345799999988876666655544 4899999999988655443332 22 2
Q ss_pred eEEEEecCCc------ccccCCCCCCEEEE
Q 044036 585 QVFLISTRAG------GLGLNLVSANRVVI 608 (875)
Q Consensus 585 ~v~LiSt~ag------g~GLNL~~An~VI~ 608 (875)
.|++.+.... ..++++...+.||+
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 3444443211 13456666666655
No 230
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=38.01 E-value=93 Score=29.88 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=38.1
Q ss_pred CCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCCC----hhHHHHHHHhCCceEEEee
Q 044036 199 KGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGPN----RDMILEKLEACGVEVLITS 252 (875)
Q Consensus 199 ~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~~----r~~~~~~~~~~~~~VvItT 252 (875)
.+++||.|+..- +......+.. .++.+..+||.. +...++.+..+...|+|+|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~-~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL-KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 111 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH-HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 357999999754 4444444544 357888999973 4566777888888999988
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=37.87 E-value=18 Score=38.33 Aligned_cols=36 Identities=17% Similarity=0.042 Sum_probs=25.8
Q ss_pred HHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHH
Q 044036 144 GVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 144 gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l 179 (875)
.+..+......+.+.+|.-+.|+|||..+-++...+
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 334444444446788999999999999888876654
No 232
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=37.77 E-value=40 Score=42.84 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=43.6
Q ss_pred hhhcccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchH
Q 044036 133 INCRLLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVI 211 (875)
Q Consensus 133 i~~~L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl 211 (875)
....|-+-|..+|.. .+...++....|+|||.+.+.-+..++..+.. ......+|+|+++...
T Consensus 7 ~~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~----------~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEEN----------PIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp ---CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS----------CCCGGGEEEECSSHHH
T ss_pred CCCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC----------CCCccceEEEeccHHH
Confidence 445789999999863 24566788899999999988877776543210 1235679999997544
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=37.43 E-value=88 Score=37.22 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.7
Q ss_pred CcEEecCCCCchHHHHHHHHHHH
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l 179 (875)
..+|.-++|+|||..|-++...+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 35788899999999988877655
No 234
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=37.29 E-value=68 Score=34.04 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=27.4
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcch
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSV 210 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sL 210 (875)
.++-+.|.|||..++.++...... ...+++|.|....-
T Consensus 32 eI~G~pGsGKTtL~Lq~~~~~~~~--------------g~g~~vlyId~E~s 69 (333)
T 3io5_A 32 ILAGPSKSFKSNFGLTMVSSYMRQ--------------YPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHH--------------CTTCEEEEEESSCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc--------------CCCceEEEEeccch
Confidence 478899999999999988876421 12456787777543
No 235
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=37.21 E-value=39 Score=36.04 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHHHHhhCCC----CcEEecCCCCchHHHHHHHHHHH
Q 044036 137 LLEHQREGVKFLYKLYKNKH----GGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~----ggILaDemGLGKTiqaiall~~l 179 (875)
-.+.++..+..+......+. +.+|.-+.|+|||..+-++...+
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35667777777776665543 56788999999999999988776
No 236
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=36.93 E-value=70 Score=27.53 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=41.0
Q ss_pred CCeEEEEec------chhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 532 GDKILLFSY------SVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 532 g~KVLIFs~------~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
.++|+||+. +-.....+..+|...|+.|..++=......+..+...... ....++++.
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~-~~vP~ifi~ 77 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNW-PTYPQLYVR 77 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSC-CSSCEEECS
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCC-CCCCEEEEC
Confidence 457999988 3346788899999999999999988776666666555533 333344443
No 237
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=36.86 E-value=65 Score=30.79 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=36.4
Q ss_pred CCCcEEEEcCcchHHHHHHHHHHhcCCcEEEEeCC----ChhHHHHHHHhCCceEEEee
Q 044036 198 KKGYVLIICPSSVIQNWEIEFSRWSTFNVSIYHGP----NRDMILEKLEACGVEVLITS 252 (875)
Q Consensus 198 ~~~~~LIV~P~sLl~qW~~E~~k~~~~~v~v~~G~----~r~~~~~~~~~~~~~VvItT 252 (875)
..+++||.|+..-...+..+.-+-.++.+..+||. .+....+.+..+...|+|+|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 103 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 35679999997544443333333345788889985 45677888888889999988
No 238
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=36.27 E-value=51 Score=28.63 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=19.1
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEE
Q 044036 532 GDKILLFSYSVRMLDILEKFLIRKGYSFS 560 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~~g~~~~ 560 (875)
+.+|||..........|...|...|+.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~ 34 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVE 34 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEE
Confidence 45677777777777777777776666544
No 239
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=35.91 E-value=1.5e+02 Score=31.26 Aligned_cols=95 Identities=9% Similarity=0.051 Sum_probs=60.3
Q ss_pred CcccCchHHHH-HHHHHHhhc--CCCeEEEEecchhHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHhcCCC
Q 044036 511 DVKSCGKMRAL-EKLMYSWAS--KGDKILLFSYSVRMLDILEKFLIRK-----GYSFSRLDGSTPSNLRQSLVDDFNSSP 582 (875)
Q Consensus 511 ~~~~s~Kl~~L-~~LL~~~~~--~g~KVLIFs~~~~~ld~L~~~L~~~-----g~~~~~ldG~~~~~eR~~~i~~F~~~~ 582 (875)
.+..+||--.. .-++..+.. .+.++||.+.....+.-+...+... ++.+..+.|+.+..+....+..-
T Consensus 52 a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---- 127 (391)
T 1xti_A 52 AKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN---- 127 (391)
T ss_dssp CSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHS----
T ss_pred CCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcC----
Confidence 36678997653 444444332 3568999999988887777766653 78999999999877766555431
Q ss_pred CceEEEEecCCc-----ccccCCCCCCEEEEc
Q 044036 583 SKQVFLISTRAG-----GLGLNLVSANRVVIF 609 (875)
Q Consensus 583 ~~~v~LiSt~ag-----g~GLNL~~An~VI~~ 609 (875)
...|++.+.... ...+++...+.||+=
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViD 159 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSLNLKHIKHFILD 159 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCSEEEEC
T ss_pred CCCEEEECHHHHHHHHHcCCccccccCEEEEe
Confidence 123455544322 123556667776663
No 240
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=35.89 E-value=47 Score=36.70 Aligned_cols=54 Identities=11% Similarity=-0.042 Sum_probs=43.5
Q ss_pred CCcEEEEcCcc-hHHHHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeec
Q 044036 199 KGYVLIICPSS-VIQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSF 253 (875)
Q Consensus 199 ~~~~LIV~P~s-Ll~qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy 253 (875)
.+++||+||.. -+....+.+.+. ..++..+||..+....+.+..+..+|+|+|-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 56899999974 455555666655 6789999999888888899999999999884
No 241
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=35.83 E-value=1.2e+02 Score=26.47 Aligned_cols=28 Identities=7% Similarity=0.241 Sum_probs=18.0
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcE
Q 044036 532 GDKILLFSYSVRMLDILEKFLIRKGYSF 559 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~~g~~~ 559 (875)
..+|||..........|...|...|+.+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v 34 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHI 34 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEE
Confidence 4466666666666666666666666654
No 242
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=35.53 E-value=21 Score=23.30 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=10.7
Q ss_pred cCHHHHHHHHHH
Q 044036 854 ATPSAREKLLQD 865 (875)
Q Consensus 854 ~t~~~r~~~l~~ 865 (875)
|||+||+.+|++
T Consensus 1 ~s~~eRq~~Lq~ 12 (28)
T 3h8k_B 1 WSADERQRMLVQ 12 (28)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 799999999965
No 243
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=34.83 E-value=64 Score=34.04 Aligned_cols=82 Identities=24% Similarity=0.232 Sum_probs=40.0
Q ss_pred CCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcc-h---HHHHHHH---HHHhcCCcEEEEeCCChhHH
Q 044036 165 GLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSS-V---IQNWEIE---FSRWSTFNVSIYHGPNRDMI 237 (875)
Q Consensus 165 GLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-L---l~qW~~E---~~k~~~~~v~v~~G~~r~~~ 237 (875)
|+|||=.++.++..+..+. -..+.+.-+....+ .++|.+.+ . ..+--+| +.+.++ .+.++.+.+|...
T Consensus 48 GTGKTP~vi~L~~~L~~~~---~~ilsRGYg~~~~~-~~~v~~~~~~~~~~~~~GDEp~lla~~~~-~~~v~v~~~R~~~ 122 (315)
T 4ehx_A 48 GSGKTSFVMYLADLLKDKR---VCILSRGYKRKSKG-TLIVSEYGNLKVSWEEAGDEPYLMAKLLP-HVSVVASEDRYKG 122 (315)
T ss_dssp CCSHHHHHHHHHHHTTTSC---EEEEECCCSCSSCS-EEEEEETTEECSCHHHHCHHHHHHHHHCT-TSEEEEESSHHHH
T ss_pred CCChHHHHHHHHHHHhhcC---ceEEeecccccccC-ceEEeecccccCCcccccCHHHHHHHhCC-CceEEEecchHHH
Confidence 8999999999988774321 11222222222333 44555532 2 2333344 334443 2334444454433
Q ss_pred -HHHHHhCCceEEEe
Q 044036 238 -LEKLEACGVEVLIT 251 (875)
Q Consensus 238 -~~~~~~~~~~VvIt 251 (875)
.......+++|+|.
T Consensus 123 ~~~~~~~~~~dviIl 137 (315)
T 4ehx_A 123 GLLALEKLSPEVFIL 137 (315)
T ss_dssp HHHHHHHHCCSEEEE
T ss_pred HHHHhhccCCcEEEe
Confidence 23334456677665
No 244
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=34.72 E-value=1.3e+02 Score=28.66 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=16.8
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~ 180 (875)
.+---|.|||..++.+...+.
T Consensus 7 ~s~kgG~GKTt~a~~la~~la 27 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALS 27 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHH
T ss_pred EeCCCCccHHHHHHHHHHHHH
Confidence 344568999999999988874
No 245
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=34.30 E-value=1.1e+02 Score=29.92 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=39.4
Q ss_pred cccCchHHH-HHHHHHHhh--------cCCCeEEEEecchhHHHHHHHHHHH---cCCcEEEEeCCCCHHHHH
Q 044036 512 VKSCGKMRA-LEKLMYSWA--------SKGDKILLFSYSVRMLDILEKFLIR---KGYSFSRLDGSTPSNLRQ 572 (875)
Q Consensus 512 ~~~s~Kl~~-L~~LL~~~~--------~~g~KVLIFs~~~~~ld~L~~~L~~---~g~~~~~ldG~~~~~eR~ 572 (875)
+..+||--. +.-++..+. ..+.++||.+.....+.-+...+.. .++.+..+.|+.+...+.
T Consensus 65 pTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (228)
T 3iuy_A 65 QTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI 137 (228)
T ss_dssp CTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH
T ss_pred CCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH
Confidence 567899654 444444432 2677899999999888888877776 478888999987655443
No 246
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=34.23 E-value=87 Score=28.49 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=40.7
Q ss_pred CeEEEEec------chhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 533 DKILLFSY------SVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 533 ~KVLIFs~------~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
.+|+||+. +-.....+..+|...|++|..++=....+.+..+...... +...+++|.
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~-~tvP~VfI~ 97 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVD 97 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTC-CSSCEEEET
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCC-CCcCEEEEC
Confidence 47999987 4567889999999999999999877666666666554433 344444443
No 247
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=34.21 E-value=36 Score=37.76 Aligned_cols=54 Identities=7% Similarity=-0.001 Sum_probs=35.3
Q ss_pred CCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeec
Q 044036 199 KGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSF 253 (875)
Q Consensus 199 ~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy 253 (875)
.+++||+||..- +....+.+... +.++..+||..+......+..+..+|+|+|-
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-GKSVVVLNRKTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-TCCEEECCSSSCC--------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-CCCEEEecchhHHHHHhhhcCCCceEEEECC
Confidence 468999999743 44455555554 6789999998888889999999999999884
No 248
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=34.07 E-value=79 Score=27.73 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=13.3
Q ss_pred CeEEEEecchhHHHHHHHHHHHcCCc
Q 044036 533 DKILLFSYSVRMLDILEKFLIRKGYS 558 (875)
Q Consensus 533 ~KVLIFs~~~~~ld~L~~~L~~~g~~ 558 (875)
.+|||..........|...|...|+.
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~ 32 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFD 32 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCe
Confidence 34555555555555555555554444
No 249
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=34.04 E-value=1.5e+02 Score=28.91 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=40.1
Q ss_pred cccCchHHH-HHHHHHHhh------cCCCeEEEEecchhHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHH
Q 044036 512 VKSCGKMRA-LEKLMYSWA------SKGDKILLFSYSVRMLDILEKFLIRK----GYSFSRLDGSTPSNLRQS 573 (875)
Q Consensus 512 ~~~s~Kl~~-L~~LL~~~~------~~g~KVLIFs~~~~~ld~L~~~L~~~----g~~~~~ldG~~~~~eR~~ 573 (875)
+..+||--. +.-++..+. ..+.++||.+.....+.-+...+... ++.+..+.|+.+......
T Consensus 70 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 142 (236)
T 2pl3_A 70 KTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 142 (236)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHH
Confidence 567899764 333333332 35778999999988777666666653 588899999876544433
No 250
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=33.47 E-value=67 Score=42.63 Aligned_cols=48 Identities=15% Similarity=-0.022 Sum_probs=36.8
Q ss_pred hhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHH
Q 044036 152 YKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWE 215 (875)
Q Consensus 152 ~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~ 215 (875)
+..+...+|+-+.|.|||.-++.++..+.. ..+++++|.-.....+|.
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~----------------~g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR----------------EGKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT----------------TTCCEEEECTTSCCCHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh----------------cCCcEEEEECCCcHHHHH
Confidence 334455579999999999999999887632 245789998877777775
No 251
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=32.77 E-value=57 Score=27.12 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=40.2
Q ss_pred eEEEEecch-hHH------HHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcC-CCCceEEEEe
Q 044036 534 KILLFSYSV-RML------DILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNS-SPSKQVFLIS 590 (875)
Q Consensus 534 KVLIFs~~~-~~l------d~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~-~~~~~v~LiS 590 (875)
+|+||+... ... .....+|...|++|..+|=....+.|+.+...... .....+++|.
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~ 67 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNG 67 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEET
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEEC
Confidence 688887653 345 68888999999999999998887778777776642 1233444443
No 252
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=32.51 E-value=1.3e+02 Score=26.44 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=16.5
Q ss_pred CeEEEEecchhHHHHHHHHHHHcCCcEE
Q 044036 533 DKILLFSYSVRMLDILEKFLIRKGYSFS 560 (875)
Q Consensus 533 ~KVLIFs~~~~~ld~L~~~L~~~g~~~~ 560 (875)
.+|||..........|...|...|+.+.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~ 33 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYTVE 33 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCEEE
Confidence 4566666666666666666666555543
No 253
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=32.45 E-value=41 Score=33.84 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=19.8
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
..|.+|.-++|+|||..+-++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3567788999999999888776654
No 254
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=32.12 E-value=56 Score=36.24 Aligned_cols=21 Identities=19% Similarity=0.070 Sum_probs=17.2
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~ 180 (875)
++-..|.|||.++..++.++.
T Consensus 105 ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 105 MAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp EECSTTSSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 444689999999999988774
No 255
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=31.42 E-value=54 Score=42.80 Aligned_cols=28 Identities=21% Similarity=0.016 Sum_probs=22.5
Q ss_pred hCCCCcEEecCCCCchHHHHHHHHHHHh
Q 044036 153 KNKHGGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 153 ~~~~ggILaDemGLGKTiqaiall~~l~ 180 (875)
..+...+|+-+.|.|||..++.++..+.
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 3444567899999999999999988764
No 256
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=31.30 E-value=2.4e+02 Score=28.26 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=56.1
Q ss_pred cccCchHHH-HHHHHHHhh------cCCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhcC
Q 044036 512 VKSCGKMRA-LEKLMYSWA------SKGDKILLFSYSVRMLDILEKFLIR----KGYSFSRLDGSTPSNLRQSLVDDFNS 580 (875)
Q Consensus 512 ~~~s~Kl~~-L~~LL~~~~------~~g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~~ldG~~~~~eR~~~i~~F~~ 580 (875)
+..|||--+ +.-++..+. ..+.++||.+.....+.-+...+.. .++.+..+.|+.........+..
T Consensus 99 ~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 175 (262)
T 3ly5_A 99 KTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN--- 175 (262)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH---
T ss_pred cCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC---
Confidence 567899754 444454433 2578899999998877666666654 47788899999876555444332
Q ss_pred CCCceEEEEecC------C-cccccCCCCCCEEEE
Q 044036 581 SPSKQVFLISTR------A-GGLGLNLVSANRVVI 608 (875)
Q Consensus 581 ~~~~~v~LiSt~------a-gg~GLNL~~An~VI~ 608 (875)
+ .. ++|+|. . ...++++...+.||+
T Consensus 176 ~--~~-Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 176 G--IN-IIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp C--CS-EEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred C--CC-EEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 2 23 455551 1 122456666666655
No 257
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=30.25 E-value=61 Score=34.07 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc
Q 044036 145 VKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS 208 (875)
Q Consensus 145 v~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 208 (875)
+..+..-+..+.-.+|+-..|.|||.-++.++..... ...++|+++--
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----------------~g~~vl~~slE 105 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----------------NDDVVNLHSLE 105 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----------------TTCEEEEEESS
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------------cCCeEEEEECC
Confidence 3344433444555689999999999999888876532 12578888754
No 258
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=30.17 E-value=98 Score=26.37 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=16.2
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 555 KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 555 ~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
..+....+|-.++..+-.+++...+......++++|
T Consensus 45 ~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 45 LQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp TCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 345555555555443434444444333333344444
No 259
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=30.01 E-value=1e+02 Score=29.81 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=38.8
Q ss_pred cccCchHHH-HHHHHHHhh--cCCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEeCCCCHHHH
Q 044036 512 VKSCGKMRA-LEKLMYSWA--SKGDKILLFSYSVRMLDILEKFLIR----KGYSFSRLDGSTPSNLR 571 (875)
Q Consensus 512 ~~~s~Kl~~-L~~LL~~~~--~~g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~~ldG~~~~~eR 571 (875)
+..+||--. +.-++..+. ..+.++||.+.....+.-+...+.. .++.+..+.|+.+..+.
T Consensus 59 pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (224)
T 1qde_A 59 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 125 (224)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------
T ss_pred CCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH
Confidence 567899866 666666553 2456899999998877766666554 47888999998765443
No 260
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=30.00 E-value=89 Score=32.75 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=15.4
Q ss_pred EecCCCCchHHHHHHHHHHH
Q 044036 160 LGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l 179 (875)
+.-..|.|||..+..++..+
T Consensus 109 ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 109 VVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCChHHHHHHHHHHHH
Confidence 34469999999888777665
No 261
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.80 E-value=1e+02 Score=26.62 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=36.8
Q ss_pred CCeEEEEecch-hHHH------HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHh
Q 044036 532 GDKILLFSYSV-RMLD------ILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDF 578 (875)
Q Consensus 532 g~KVLIFs~~~-~~ld------~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F 578 (875)
..+|+||+... .... .+..+|...|+.|..+|=......|+.+...+
T Consensus 7 ~m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 7 GMVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred ccEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 34788887543 3345 68899999999999999988888888887776
No 262
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=29.75 E-value=1.9e+02 Score=27.26 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=45.4
Q ss_pred cccCchHHH-HHHHHHHhh-----cCCCeEEEEecchhHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHH
Q 044036 512 VKSCGKMRA-LEKLMYSWA-----SKGDKILLFSYSVRMLDILEKFLIRK--GYSFSRLDGSTPSNLRQSLV 575 (875)
Q Consensus 512 ~~~s~Kl~~-L~~LL~~~~-----~~g~KVLIFs~~~~~ld~L~~~L~~~--g~~~~~ldG~~~~~eR~~~i 575 (875)
+..+||.-. +.-++..+. ..+.++||.+.....+.-+...+... ++.+..+.|+.+.......+
T Consensus 46 ~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (207)
T 2gxq_A 46 RTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL 117 (207)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh
Confidence 567899866 555555543 35678999999988888777777765 47788899987755444333
No 263
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=29.68 E-value=1.1e+02 Score=33.82 Aligned_cols=21 Identities=24% Similarity=0.072 Sum_probs=16.6
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~ 180 (875)
+.-..|.|||..+..++..+.
T Consensus 103 i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 103 LVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp EECCTTSSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 445789999999888877763
No 264
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=29.50 E-value=33 Score=38.17 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc
Q 044036 144 GVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS 208 (875)
Q Consensus 144 gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 208 (875)
++..++..+..+.-.||+-.+|.|||.-++.++..... ...++|+++--
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~----------------~g~~vl~fSlE 234 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----------------NDDVVNLHSLE 234 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH----------------TTCEEEEECSS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH----------------cCCEEEEEECC
Confidence 34455544445555689999999999999998887642 24578888764
No 265
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=29.33 E-value=49 Score=32.73 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=31.0
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWEIEF 218 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~~E~ 218 (875)
+.-.+|+-+.|.|||..++.++..... ..++++++.-.....+..+.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~----------------~~~~v~~~~~e~~~~~~~~~~ 70 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK----------------MGEPGIYVALEEHPVQVRQNM 70 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH----------------TTCCEEEEESSSCHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh----------------cCCeEEEEEccCCHHHHHHHH
Confidence 333467788999999999888876642 245677777544444443333
No 266
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=29.16 E-value=39 Score=33.06 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=18.4
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
|.+-..|.|||..++.++.++.
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la 27 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAK 27 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4566789999999999998874
No 267
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=28.82 E-value=73 Score=27.22 Aligned_cols=46 Identities=17% Similarity=0.368 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCc-EEEEeCCCC
Q 044036 521 LEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYS-FSRLDGSTP 567 (875)
Q Consensus 521 L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~-~~~ldG~~~ 567 (875)
+...+.. ...+.+|+|||..-.........|...|++ +..++|++.
T Consensus 48 l~~~~~~-l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 48 LGAFMRD-NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHH-SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHh-cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4444444 356788999999877777888889999995 888999864
No 268
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=28.80 E-value=36 Score=33.71 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.2
Q ss_pred CcEEecCCCCchHHHHHHHHHHHh
Q 044036 157 GGILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 157 ggILaDemGLGKTiqaiall~~l~ 180 (875)
+.++.-..|+|||..+.+++..+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999888763
No 269
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=28.66 E-value=66 Score=27.51 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=31.6
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHHcCCc-EEEEeCCCC
Q 044036 530 SKGDKILLFSYSVRMLDILEKFLIRKGYS-FSRLDGSTP 567 (875)
Q Consensus 530 ~~g~KVLIFs~~~~~ld~L~~~L~~~g~~-~~~ldG~~~ 567 (875)
..+..|||||..-.........|...|+. +..++|++.
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 46678999999877778888899999995 888999853
No 270
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=28.63 E-value=1.4e+02 Score=34.43 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=56.3
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcC-CCCceEEEEe
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNS-SPSKQVFLIS 590 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~-~~~~~v~LiS 590 (875)
+..+||--.. ++.-+. .+.++||.+.....+.-....|...|+.+..++|+++..++..+...+.. .....+++++
T Consensus 67 pTGsGKTl~~--~lpal~-~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~T 143 (591)
T 2v1x_A 67 PTGGGKSLCY--QLPALC-SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVT 143 (591)
T ss_dssp CTTSCTTHHH--HHHHHT-SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEEC
T ss_pred CCCChHHHHH--HHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEC
Confidence 5677886432 122222 34589999999998888888888889999999999999998888887742 2234566666
Q ss_pred cC
Q 044036 591 TR 592 (875)
Q Consensus 591 t~ 592 (875)
..
T Consensus 144 pe 145 (591)
T 2v1x_A 144 PE 145 (591)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 271
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=28.37 E-value=46 Score=28.17 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=31.5
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCC
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGST 566 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~ 566 (875)
++.+++|||..-.........|...|+++..++|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 567999999987777888889999999999999985
No 272
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=27.69 E-value=34 Score=34.29 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.1
Q ss_pred EEecCCCCchHHHHHHHHHHHhcCC
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGKD 183 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~~ 183 (875)
|-+-++|.|||+.+++++.++..++
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 5688899999999999999886543
No 273
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=27.19 E-value=46 Score=27.75 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=30.0
Q ss_pred CeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCC
Q 044036 533 DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTP 567 (875)
Q Consensus 533 ~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~ 567 (875)
++++|||+.-.........|...|+++..++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999877777888889999999888899864
No 274
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=27.05 E-value=46 Score=28.31 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=31.7
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCC
Q 044036 530 SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGST 566 (875)
Q Consensus 530 ~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~ 566 (875)
..+++|+|||..-.........|...|+++..++|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 3567899999987777888889999999999999984
No 275
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=26.99 E-value=65 Score=35.67 Aligned_cols=56 Identities=14% Similarity=-0.006 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCcchHHHHH
Q 044036 145 VKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPSSVIQNWE 215 (875)
Q Consensus 145 v~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sLl~qW~ 215 (875)
+..++..+..+.-.+|+-..|.|||.-++.++...... ...+++++..-.-..++.
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---------------~g~~vl~~slE~~~~~l~ 245 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---------------EGVGVGIYSLEMPAAQLT 245 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---------------TCCCEEEEESSSCHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---------------CCCeEEEEECCCCHHHHH
Confidence 44444334444455789999999999999888876421 245788887643333433
No 276
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=26.78 E-value=40 Score=36.06 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=33.5
Q ss_pred HHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc
Q 044036 145 VKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS 208 (875)
Q Consensus 145 v~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 208 (875)
+..+...+..+.=.||+-..|.|||.-++.++..+.. ...+++++..-
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------------~g~~Vl~fSlE 83 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------------DDRGVAVFSLE 83 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------------TTCEEEEEESS
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------------cCCeEEEEeCC
Confidence 3344433444555689999999999999988877642 35678888764
No 277
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=26.62 E-value=1.1e+02 Score=24.58 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=31.9
Q ss_pred HHHHHHHh-hcCCCeEEEEecchhHHHHHHHHHHHcCCc-EEEEeCCC
Q 044036 521 LEKLMYSW-ASKGDKILLFSYSVRMLDILEKFLIRKGYS-FSRLDGST 566 (875)
Q Consensus 521 L~~LL~~~-~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~-~~~ldG~~ 566 (875)
+.+.+..+ ...+.+++|||..-.........|...|++ +..+ |++
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 44445544 246778999999877777788889999996 4445 764
No 278
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.55 E-value=2.3e+02 Score=29.53 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=20.2
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
+.-.+++-+.|+|||..++.++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3444688899999999999988765
No 279
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=26.54 E-value=3.1e+02 Score=23.61 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=26.6
Q ss_pred CeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCC---CCceEEEEecC
Q 044036 533 DKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSS---PSKQVFLISTR 592 (875)
Q Consensus 533 ~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~---~~~~v~LiSt~ 592 (875)
..|..+......++.+ ....+....+|-.++..+-..++...+.. +...|++++..
T Consensus 27 ~~v~~~~~~~~a~~~~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 27 YLVIESKNEKEALEQI----DHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp SEEEEESSHHHHHHHH----HHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred ceEEEeCCHHHHHHHH----hcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecC
Confidence 4555555444444433 33456777777666555545555555443 34455666543
No 280
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=26.29 E-value=64 Score=34.14 Aligned_cols=44 Identities=5% Similarity=-0.109 Sum_probs=29.6
Q ss_pred cHHHHHHHH-HHHHHhhCCC--CcEEecCCCCchHHHHHHHHHHHhc
Q 044036 138 LEHQREGVK-FLYKLYKNKH--GGILGDDMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 138 ~pyQ~~gv~-~l~~~~~~~~--ggILaDemGLGKTiqaiall~~l~~ 181 (875)
|+-|...+. ++......+. +.+|.-.+|+|||.++-+++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455666555 3444443333 3457889999999999999887753
No 281
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=26.29 E-value=38 Score=34.38 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=20.9
Q ss_pred EEecCCCCchHHHHHHHHHHHhcC
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~ 182 (875)
|.+-++|.|||+.+++++.++..+
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~ 49 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNAC 49 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhC
Confidence 568899999999999999988654
No 282
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=26.26 E-value=2.2e+02 Score=32.10 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEc----CcchHHHHHHHH
Q 044036 143 EGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIIC----PSSVIQNWEIEF 218 (875)
Q Consensus 143 ~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~----P~sLl~qW~~E~ 218 (875)
.+|.-|.-..+.++.+|+|+ -|.|||..++..+.... ...-+.|+| -.+-+....+++
T Consensus 151 kaID~l~PigrGQR~~Ifg~-~g~GKT~l~l~~I~n~~-----------------~~dv~~V~~~IGeR~~ev~e~~~~l 212 (513)
T 3oaa_A 151 KAVDSMIPIGRGQRELIIGD-RQTGKTALAIDAIINQR-----------------DSGIKCIYVAIGQKASTISNVVRKL 212 (513)
T ss_dssp HHHHHHSCCBTTCBCEEEES-SSSSHHHHHHHHHHTTS-----------------SSSCEEEEEEESCCHHHHHHHHHHH
T ss_pred eeeccccccccCCEEEeecC-CCCCcchHHHHHHHhhc-----------------cCCceEEEEEecCChHHHHHHHHHH
Confidence 35555555445666778776 59999999876655321 122222332 246677777788
Q ss_pred HHhcC
Q 044036 219 SRWST 223 (875)
Q Consensus 219 ~k~~~ 223 (875)
.....
T Consensus 213 ~~~g~ 217 (513)
T 3oaa_A 213 EEHGA 217 (513)
T ss_dssp HHHSC
T ss_pred hhcCc
Confidence 77654
No 283
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=26.19 E-value=95 Score=37.21 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=39.4
Q ss_pred CCcccCchHHHHHHHHHHhhcC-----CCeEEEEecchhHHHHHHHHHHH----cCCcEEEEeCCCCHHHHH
Q 044036 510 SDVKSCGKMRALEKLMYSWASK-----GDKILLFSYSVRMLDILEKFLIR----KGYSFSRLDGSTPSNLRQ 572 (875)
Q Consensus 510 ~~~~~s~Kl~~L~~LL~~~~~~-----g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~~ldG~~~~~eR~ 572 (875)
..+..+||.-...-.+...... +.++||.+.....+.-....+.. .|+.+..++|+.+...+.
T Consensus 269 ~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 340 (797)
T 4a2q_A 269 CAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSV 340 (797)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CH
T ss_pred EeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhH
Confidence 3467789976544444333222 78999999988776655555544 499999999998765543
No 284
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=26.09 E-value=96 Score=32.20 Aligned_cols=21 Identities=24% Similarity=0.072 Sum_probs=15.9
Q ss_pred EecCCCCchHHHHHHHHHHHh
Q 044036 160 LGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 160 LaDemGLGKTiqaiall~~l~ 180 (875)
+.-..|.|||..+..++..+.
T Consensus 103 i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 103 LVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EECCTTTTHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 345789999998888776653
No 285
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=26.07 E-value=80 Score=35.49 Aligned_cols=93 Identities=15% Similarity=0.228 Sum_probs=51.6
Q ss_pred CcccCchHHHHHHHH-HHhhcC----CCeEEEEecchhHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhcCC
Q 044036 511 DVKSCGKMRALEKLM-YSWASK----GDKILLFSYSVRMLDILEKFLIR----KGYSFSRLDGSTPSNLRQSLVDDFNSS 581 (875)
Q Consensus 511 ~~~~s~Kl~~L~~LL-~~~~~~----g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~~ldG~~~~~eR~~~i~~F~~~ 581 (875)
.+..+||.-...-.+ ..+... +.++||.+.....+.-+...+.. .++.+..++|+.+...+...+.. +
T Consensus 29 ~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~ 105 (556)
T 4a2p_A 29 APTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE---D 105 (556)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH---H
T ss_pred cCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC---C
Confidence 366789976543333 333222 77899999988776655555544 49999999999876554333221 1
Q ss_pred CCceEEEEecCCccc----c-c-CCCCCCEEEE
Q 044036 582 PSKQVFLISTRAGGL----G-L-NLVSANRVVI 608 (875)
Q Consensus 582 ~~~~v~LiSt~agg~----G-L-NL~~An~VI~ 608 (875)
..|++.+...... | + ++...+.||+
T Consensus 106 --~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 106 --SDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp --CSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred --CCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 2345554433221 1 3 5666666666
No 286
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=25.54 E-value=2.7e+02 Score=23.30 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=41.5
Q ss_pred CCCeEEEEecc-hhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEe
Q 044036 531 KGDKILLFSYS-VRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIS 590 (875)
Q Consensus 531 ~g~KVLIFs~~-~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiS 590 (875)
...+|+||+.. -.....+..+|...|+.|..++=....+.++.+.+.........++++.
T Consensus 14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~ 74 (99)
T 3qmx_A 14 VSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFID 74 (99)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEET
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEEC
Confidence 45688998754 4577888899999999999999888766666555443133344445554
No 287
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=25.50 E-value=36 Score=33.83 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.9
Q ss_pred cCCCCchHHHHHHHHHHHh
Q 044036 162 DDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 162 DemGLGKTiqaiall~~l~ 180 (875)
---|.|||..++.+...+.
T Consensus 7 ~kGGvGKTt~a~~LA~~la 25 (254)
T 3kjh_A 7 GKGGVGKTTVAAGLIKIMA 25 (254)
T ss_dssp CSSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 3568999999999988874
No 288
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=25.40 E-value=66 Score=36.12 Aligned_cols=61 Identities=16% Similarity=0.331 Sum_probs=40.6
Q ss_pred CcccCchHHHHHHHH-HHhhcC----CCeEEEEecchhHHHHHHHHHH----HcCCcEEEEeCCCCHHHH
Q 044036 511 DVKSCGKMRALEKLM-YSWASK----GDKILLFSYSVRMLDILEKFLI----RKGYSFSRLDGSTPSNLR 571 (875)
Q Consensus 511 ~~~~s~Kl~~L~~LL-~~~~~~----g~KVLIFs~~~~~ld~L~~~L~----~~g~~~~~ldG~~~~~eR 571 (875)
.+..+||--...-.+ ..+... +.++||.+.....+.-....+. ..++.+..++|+.+...+
T Consensus 26 ~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 26 APTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVS 95 (555)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSC
T ss_pred eCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhh
Confidence 356789976544333 333322 7799999998776655444444 449999999999865544
No 289
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=25.38 E-value=1.6e+02 Score=27.59 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=43.8
Q ss_pred CCCeEEEEe----cchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecC
Q 044036 531 KGDKILLFS----YSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTR 592 (875)
Q Consensus 531 ~g~KVLIFs----~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ 592 (875)
...|||+++ .+.--+.++..+|...|+.+..+...++.++-.+.+.+++. .++.+|..
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~----diV~lS~~ 78 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDV----DVIGVSIL 78 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTC----SEEEEEES
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCC----CEEEEEee
Confidence 456889986 44456789999999999999888888998887677766643 35666653
No 290
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=25.21 E-value=1.9e+02 Score=24.63 Aligned_cols=74 Identities=14% Similarity=-0.007 Sum_probs=37.3
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhcC-CCCceEEEEecCCcc-----cc-cCCCCCCEEEEcCCCCCchhHHHhhhcccccC
Q 044036 557 YSFSRLDGSTPSNLRQSLVDDFNS-SPSKQVFLISTRAGG-----LG-LNLVSANRVVIFDPNWNPAQDLQAQDRSFRFG 629 (875)
Q Consensus 557 ~~~~~ldG~~~~~eR~~~i~~F~~-~~~~~v~LiSt~agg-----~G-LNL~~An~VI~~D~~WNp~~~~QaigR~~RiG 629 (875)
+....+|-.++...-.+++..++. .+...|+++|..... .. .....+...-++.-|+++....+++.++..-+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 566777766665444555555542 234456666644321 10 11122222233445677777777777766544
Q ss_pred C
Q 044036 630 Q 630 (875)
Q Consensus 630 Q 630 (875)
+
T Consensus 127 ~ 127 (135)
T 3eqz_A 127 A 127 (135)
T ss_dssp -
T ss_pred c
Confidence 3
No 291
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=25.19 E-value=1.2e+02 Score=26.57 Aligned_cols=103 Identities=5% Similarity=-0.062 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCH-HHHHHHHHHhcCCCCceEEEEecCCcccc
Q 044036 519 RALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPS-NLRQSLVDDFNSSPSKQVFLISTRAGGLG 597 (875)
Q Consensus 519 ~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~-~eR~~~i~~F~~~~~~~v~LiSt~agg~G 597 (875)
..|..+|.. .|..|..++.....+..+.. ...+....+|-.++. ..-.+++...+..+...|+++|......-
T Consensus 19 ~~l~~~L~~---~g~~v~~~~~~~~a~~~l~~---~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~ 92 (140)
T 3h5i_A 19 KTIANILNK---YGYTVEIALTGEAAVEKVSG---GWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAV 92 (140)
T ss_dssp HHHHHHHHH---TTCEEEEESSHHHHHHHHHT---TCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCC
T ss_pred HHHHHHHHH---cCCEEEEecChHHHHHHHhc---CCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHH
Confidence 445555554 47788877776666554432 256788888865532 22223333333224556777776443211
Q ss_pred -cCCCCCCEEEEcCCCCCchhHHHhhhcccc
Q 044036 598 -LNLVSANRVVIFDPNWNPAQDLQAQDRSFR 627 (875)
Q Consensus 598 -LNL~~An~VI~~D~~WNp~~~~QaigR~~R 627 (875)
.....+...-++.-|+++....+++.++.+
T Consensus 93 ~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 93 VEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 112222222233345677777776666544
No 292
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=25.14 E-value=44 Score=28.82 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=30.7
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCC
Q 044036 530 SKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGST 566 (875)
Q Consensus 530 ~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~ 566 (875)
..+++++|||..-.........|...||+...+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 3567899999886666777888999999998999985
No 293
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=25.09 E-value=1.8e+02 Score=27.27 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccC
Q 044036 520 ALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLN 599 (875)
Q Consensus 520 ~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLN 599 (875)
.+.+.+.........+-|.+........|+..|...|+++..+++... .|. . . +.++|--..-|+-
T Consensus 49 ~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~-~-v~v~t~~~~KGlE 114 (174)
T 3dmn_A 49 QVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---P-G-VIVVPSFLAKGLE 114 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---S-S-EEEEEGGGCTTCC
T ss_pred HHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---C-C-eEEEEccccCCcC
Confidence 344444442223456778888888899999999999999988876542 122 1 2 4455556667754
Q ss_pred CCCCCEEEEcCCCC
Q 044036 600 LVSANRVVIFDPNW 613 (875)
Q Consensus 600 L~~An~VI~~D~~W 613 (875)
.+.||++++..
T Consensus 115 ---f~~V~~~~~~~ 125 (174)
T 3dmn_A 115 ---FDAVIVWNANQ 125 (174)
T ss_dssp ---EEEEEEETCBT
T ss_pred ---CCEEEEecCCc
Confidence 78999998764
No 294
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=24.99 E-value=60 Score=38.21 Aligned_cols=54 Identities=15% Similarity=0.019 Sum_probs=41.5
Q ss_pred CCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeec
Q 044036 199 KGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSF 253 (875)
Q Consensus 199 ~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy 253 (875)
.+++||+||..- +......+... .+++..+||..+....+.+..+..+|+|+|-
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd 464 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD 464 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-TCCEEEECSSSHHHHGGGGGTCCCSEEEECG
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-CCeEEEeChHHHHHHHHHHHCCCceEEEECc
Confidence 468999999753 44444445443 6789999999888888888888899999884
No 295
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=24.88 E-value=1.4e+02 Score=33.51 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC----cchHHHHHHHHH
Q 044036 144 GVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP----SSVIQNWEIEFS 219 (875)
Q Consensus 144 gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P----~sLl~qW~~E~~ 219 (875)
+|.-|.-..+.++.+|+|+ -|+|||..++..+.... ..+-++|++- .+-+..+.+++.
T Consensus 152 aID~l~PigrGQR~~Ifg~-~g~GKT~Lal~~I~~~~-----------------~~dv~~V~~~iGeR~~Ev~~~~~~~~ 213 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGD-RQTGKTTIAIDTIINQK-----------------GQDVICIYVAIGQKQSTVAGVVETLR 213 (502)
T ss_dssp HHHHSSCCBTTCBCEEEEC-SSSCHHHHHHHHHHGGG-----------------SCSEEEEEEEESCCHHHHHHHHHHHH
T ss_pred ecccccccccCCEEEEECC-CCCCchHHHHHHHHHhh-----------------cCCcEEEEEECCCcchHHHHHHHHHh
Confidence 4444443334556677775 59999999887666432 1222223332 456777888887
Q ss_pred HhcC
Q 044036 220 RWST 223 (875)
Q Consensus 220 k~~~ 223 (875)
....
T Consensus 214 ~~g~ 217 (502)
T 2qe7_A 214 QHDA 217 (502)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 7654
No 296
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=24.61 E-value=89 Score=28.53 Aligned_cols=38 Identities=5% Similarity=-0.079 Sum_probs=29.5
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHHcCC-cEEEEeCCCC
Q 044036 530 SKGDKILLFSYSVRMLDILEKFLIRKGY-SFSRLDGSTP 567 (875)
Q Consensus 530 ~~g~KVLIFs~~~~~ld~L~~~L~~~g~-~~~~ldG~~~ 567 (875)
..+.+|||||..-.........|...|+ ++..++|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4567899999986666778888999999 5889999974
No 297
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=24.55 E-value=93 Score=36.29 Aligned_cols=52 Identities=21% Similarity=0.156 Sum_probs=47.4
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEe
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLD 563 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ld 563 (875)
+-.+||...+..++..+...+.+|||-+.+...+|-|...|...+.++.|+.
T Consensus 213 PPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 213 PPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 4567999999999999999999999999999999999999998899988874
No 298
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.12 E-value=82 Score=26.76 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=15.8
Q ss_pred eEEEEecchhHHHHHHHHHHHcCCcEE
Q 044036 534 KILLFSYSVRMLDILEKFLIRKGYSFS 560 (875)
Q Consensus 534 KVLIFs~~~~~ld~L~~~L~~~g~~~~ 560 (875)
+|||..........+...|...|+.+.
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v~ 33 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFTVD 33 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEE
Confidence 556666666666666666665555443
No 299
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=24.09 E-value=2.3e+02 Score=29.36 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=38.7
Q ss_pred CCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCC----ChhHHHHHHHhCCceEEEeec
Q 044036 199 KGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGP----NRDMILEKLEACGVEVLITSF 253 (875)
Q Consensus 199 ~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~----~r~~~~~~~~~~~~~VvItTy 253 (875)
.+++||.|+..- +......+.. .++.+..+||. .+......+..+...|+|+|-
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~-~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR-LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD 86 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT-TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS
T ss_pred CCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec
Confidence 678999999754 3333444433 35788889997 355677788888899999983
No 300
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=23.92 E-value=44 Score=34.06 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEecCCCCchHHHHHHHHHHHhcC
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~ 182 (875)
|-+-++|.|||+.+++++.++..+
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~ 54 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQA 54 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHC
Confidence 568899999999999999988654
No 301
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=23.67 E-value=47 Score=33.61 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.9
Q ss_pred CCCCchHHHHHHHHHHHhc
Q 044036 163 DMGLGKTIQTIAFLAAVFG 181 (875)
Q Consensus 163 emGLGKTiqaiall~~l~~ 181 (875)
--|.|||..++.+...+..
T Consensus 9 KGGvGKTT~a~nLA~~la~ 27 (269)
T 1cp2_A 9 KGGIGKSTTTQNLTSGLHA 27 (269)
T ss_dssp CTTSSHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 5589999999999888753
No 302
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=22.80 E-value=2e+02 Score=32.33 Aligned_cols=77 Identities=9% Similarity=0.101 Sum_probs=56.4
Q ss_pred cccCchHHHHHHHHHHhhcCCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEec
Q 044036 512 VKSCGKMRALEKLMYSWASKGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLIST 591 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~~~~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt 591 (875)
+..+||--.. ++.-+. .+.++||.+.....+.-....|...|+.+..++|+.+..++..+...+..+. ..+++++.
T Consensus 48 pTGsGKTl~~--~lp~l~-~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~-~~ilv~Tp 123 (523)
T 1oyw_A 48 PTGGGKSLCY--QIPALL-LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ-IRLLYIAP 123 (523)
T ss_dssp SCHHHHHHHH--HHHHHH-SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC-CSEEEECH
T ss_pred CCCcHHHHHH--HHHHHH-hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-CCEEEECH
Confidence 5677886422 122222 2458999999999888888889899999999999999888888888776653 34566664
Q ss_pred C
Q 044036 592 R 592 (875)
Q Consensus 592 ~ 592 (875)
.
T Consensus 124 e 124 (523)
T 1oyw_A 124 E 124 (523)
T ss_dssp H
T ss_pred H
Confidence 4
No 303
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=22.68 E-value=1.4e+02 Score=33.60 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcC----cchHHHHHHHH
Q 044036 143 EGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICP----SSVIQNWEIEF 218 (875)
Q Consensus 143 ~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P----~sLl~qW~~E~ 218 (875)
.+|.-|.-..+.++.+|+|+ -|+|||..++..+.... ...-++|++- .+-+..+.+++
T Consensus 164 raID~l~PigrGQR~~I~g~-~g~GKT~Lal~~I~~~~-----------------~~dv~~V~~~IGeR~~Ev~e~~~~~ 225 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGD-RQTGKTAIAIDTIINQK-----------------GQGVYCIYVAIGQKKSAIARIIDKL 225 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEE-TTSSHHHHHHHHHHTTT-----------------TTTEEEEEEEESCCHHHHHHHHHHH
T ss_pred cccccccccccCCEEEEEcC-CCCCccHHHHHHHHHhh-----------------cCCcEEEEEEcCCCcHHHHHHHHHH
Confidence 44555544445566777775 59999999887666431 1222223332 35677777788
Q ss_pred HHhcC
Q 044036 219 SRWST 223 (875)
Q Consensus 219 ~k~~~ 223 (875)
.....
T Consensus 226 ~~~g~ 230 (515)
T 2r9v_A 226 RQYGA 230 (515)
T ss_dssp HHTTG
T ss_pred HhCCC
Confidence 76544
No 304
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=22.66 E-value=1.2e+02 Score=26.28 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=16.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEE
Q 044036 532 GDKILLFSYSVRMLDILEKFLIRKGYSFS 560 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~~g~~~~ 560 (875)
..+|||..........|...|...|+.+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~ 35 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAV 35 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEE
Confidence 34566666666666666666655555543
No 305
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=22.52 E-value=1.9e+02 Score=24.97 Aligned_cols=91 Identities=11% Similarity=-0.057 Sum_probs=39.3
Q ss_pred CCe-EEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcC---CCCceEEEEecCCcccc-cCC--CCCC
Q 044036 532 GDK-ILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNS---SPSKQVFLISTRAGGLG-LNL--VSAN 604 (875)
Q Consensus 532 g~K-VLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~---~~~~~v~LiSt~agg~G-LNL--~~An 604 (875)
|-. |..++.....++.+ ....+....+|-.++...-.+++...+. .+...|+++|......- ... .+|+
T Consensus 33 ~~~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~ 108 (143)
T 3cnb_A 33 PYAKIKIAYNPFDAGDLL----HTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAE 108 (143)
T ss_dssp TTCEEEEECSHHHHHHHH----HHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCS
T ss_pred CccEEEEECCHHHHHHHH----HhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCc
Confidence 444 44444443333333 2345666666655443333334444433 23345555554322110 001 1123
Q ss_pred EEEEcCCCCCchhHHHhhhccccc
Q 044036 605 RVVIFDPNWNPAQDLQAQDRSFRF 628 (875)
Q Consensus 605 ~VI~~D~~WNp~~~~QaigR~~Ri 628 (875)
.++ .-|.++....+++.++.+-
T Consensus 109 ~~l--~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 109 TCF--GKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp EEE--ESSCCHHHHHHHHHHHHHT
T ss_pred EEE--eCCCCHHHHHHHHHHHHHh
Confidence 222 2345666666666665543
No 306
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=22.25 E-value=71 Score=34.11 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=20.3
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
..+.+|.-++|+|||..|-++...+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4567889999999999988877654
No 307
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=22.08 E-value=56 Score=32.20 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=18.0
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
|.+-.-|.|||..++.+..++.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la 28 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALG 28 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHH
Confidence 4456679999999999988874
No 308
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=22.03 E-value=40 Score=38.20 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHH
Q 044036 143 EGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAA 178 (875)
Q Consensus 143 ~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~ 178 (875)
+.+..+......+.+.+|.-++|+|||..|-++...
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHH
Confidence 334444444445678889999999999988776553
No 309
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=21.97 E-value=1.9e+02 Score=25.68 Aligned_cols=85 Identities=14% Similarity=0.204 Sum_probs=47.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCc-ccccCCC-------C
Q 044036 531 KGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAG-GLGLNLV-------S 602 (875)
Q Consensus 531 ~g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~ag-g~GLNL~-------~ 602 (875)
++.+|||..........|...|...|+.+..... . .+++...... ...++|+..... ..|+.+. .
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~---~---~~a~~~l~~~-~~dlvi~d~~l~~~~g~~~~~~l~~~~~ 78 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTS---P---LDALEALKGT-SVQLVISDMRMPEMGGEVFLEQVAKSYP 78 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESC---H---HHHHHHHTTS-CCSEEEEESSCSSSCHHHHHHHHHHHCT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCC---H---HHHHHHHhcC-CCCEEEEecCCCCCCHHHHHHHHHHhCC
Confidence 3568888888888888899988888876653332 2 2234444433 244677765543 3455432 1
Q ss_pred CCEEEEcCCCCCchhHHHhh
Q 044036 603 ANRVVIFDPNWNPAQDLQAQ 622 (875)
Q Consensus 603 An~VI~~D~~WNp~~~~Qai 622 (875)
.-.||++...-++....+++
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~ 98 (154)
T 2rjn_A 79 DIERVVISGYADAQATIDAV 98 (154)
T ss_dssp TSEEEEEECGGGHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHH
Confidence 23455554444444434433
No 310
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=21.83 E-value=1.1e+02 Score=35.53 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=41.8
Q ss_pred CCcEEEEcCcch-HHHHHHHHHHhcCCcEEEEeCCChhHHHHHHHhCCceEEEeec
Q 044036 199 KGYVLIICPSSV-IQNWEIEFSRWSTFNVSIYHGPNRDMILEKLEACGVEVLITSF 253 (875)
Q Consensus 199 ~~~~LIV~P~sL-l~qW~~E~~k~~~~~v~v~~G~~r~~~~~~~~~~~~~VvItTy 253 (875)
.+++||.|+..- +....+.|.. ...++..+||..+...++.+..+...|+|+|-
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~-~g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRK-SGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEECChhHHHHHHHHHHH-cCCcEEEEChHHHHHHHHhhcCCCcEEEEECc
Confidence 467999999754 4444444544 35789999999888888999999999999985
No 311
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=21.60 E-value=2e+02 Score=32.42 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEc----CcchHHHHHHHH
Q 044036 143 EGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIIC----PSSVIQNWEIEF 218 (875)
Q Consensus 143 ~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~----P~sLl~qW~~E~ 218 (875)
.+|.-|.-..+.++.+|+|+ -|+|||..++..+......... ......-++|++ -.+-+..+.+++
T Consensus 151 raID~l~PigrGQR~~I~g~-~g~GKT~Lal~~I~~q~~~~~~---------~~~~~d~~~V~~~IGeR~~Ev~~~~~~~ 220 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGD-RQTGKTSIAIDTIINQKRFNDG---------TDEKKKLYCIYVAIGQKRSTVAQLVKRL 220 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEES-TTSSHHHHHHHHHHHTHHHHTS---------CCTTTCCEEEEEEESCCHHHHHHHHHHH
T ss_pred eeeccccccccCCEEEEecC-CCCCchHHHHHHHHHHHhhccc---------cccCCCeEEEEEECCCCcHHHHHHHHHH
Confidence 34555544445566777775 5999999988776654321000 000112223332 246677888888
Q ss_pred HHhcC
Q 044036 219 SRWST 223 (875)
Q Consensus 219 ~k~~~ 223 (875)
.....
T Consensus 221 ~~~g~ 225 (510)
T 2ck3_A 221 TDADA 225 (510)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 77654
No 312
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=21.37 E-value=45 Score=37.60 Aligned_cols=42 Identities=5% Similarity=-0.211 Sum_probs=30.3
Q ss_pred hhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc
Q 044036 152 YKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS 208 (875)
Q Consensus 152 ~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 208 (875)
+..+.-.+|+-..|.|||..++.++..+... ...++|++.--
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~---------------~g~~vl~~s~E 280 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---------------MGKKVGLAMLE 280 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---------------SCCCEEEEESS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh---------------cCCcEEEEecc
Confidence 3344456789999999999999998877421 14568888754
No 313
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=21.28 E-value=62 Score=34.43 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.0
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
+..---|.|||..++++...+.
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la 41 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLA 41 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHT
T ss_pred EEeCCCCccHHHHHHHHHHHHH
Confidence 4566779999999999988874
No 314
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=21.19 E-value=91 Score=34.58 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=33.4
Q ss_pred HHHHHHHhhCCCCcEEecCCCCchHHHHHHHHHHHhcCCCCCcchhhcccccCCCCcEEEEcCc
Q 044036 145 VKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLAAVFGKDESSDSTILKDNKVDKKGYVLIICPS 208 (875)
Q Consensus 145 v~~l~~~~~~~~ggILaDemGLGKTiqaiall~~l~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 208 (875)
+..+...+..+.-.+|+-..|.|||.-++.++..+... ...+++++...
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---------------~g~~Vl~~s~E 241 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---------------TNENVAIFSLE 241 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---------------SSCCEEEEESS
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---------------CCCcEEEEECC
Confidence 44444344455556789999999999999888776421 13478888754
No 315
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=21.02 E-value=3.4e+02 Score=27.99 Aligned_cols=91 Identities=9% Similarity=0.100 Sum_probs=55.7
Q ss_pred cccCchHHHHHHHHHHh-h-cCCCeEEEEecchhHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHhcCCCCce
Q 044036 512 VKSCGKMRALEKLMYSW-A-SKGDKILLFSYSVRMLDILEKFLIR----KGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQ 585 (875)
Q Consensus 512 ~~~s~Kl~~L~~LL~~~-~-~~g~KVLIFs~~~~~ld~L~~~L~~----~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~ 585 (875)
+..+||--.....+..+ . ..+.++||.+.....++-+...+.. .++.+..+.|+....+....+. . ..
T Consensus 52 ~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~---~~ 125 (367)
T 1hv8_A 52 RTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK---N---AN 125 (367)
T ss_dssp CSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH---T---CS
T ss_pred CCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC---C---CC
Confidence 56789976644444333 2 2477999999998877766666654 4788999999987665544433 1 23
Q ss_pred EEEEecCCcc-----cccCCCCCCEEEE
Q 044036 586 VFLISTRAGG-----LGLNLVSANRVVI 608 (875)
Q Consensus 586 v~LiSt~agg-----~GLNL~~An~VI~ 608 (875)
|++.+....- ..+++...+.||+
T Consensus 126 iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 126 IVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp EEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred EEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 4444433211 1245556666655
No 316
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.92 E-value=83 Score=33.15 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhCCCC--cEEecCCCCchHHHHHHHHHHHh
Q 044036 142 REGVKFLYKLYKNKHG--GILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 142 ~~gv~~l~~~~~~~~g--gILaDemGLGKTiqaiall~~l~ 180 (875)
...+..+......+.- .+|.-+.|+|||..+-+++..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3344444333444432 67788999999999999888774
No 317
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=20.89 E-value=67 Score=31.24 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=18.9
Q ss_pred CCCcEEecCCCCchHHHHHHHHHHH
Q 044036 155 KHGGILGDDMGLGKTIQTIAFLAAV 179 (875)
Q Consensus 155 ~~ggILaDemGLGKTiqaiall~~l 179 (875)
+.-.+|.-+.|.|||..+..++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3344577889999999888877655
No 318
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=20.88 E-value=87 Score=30.88 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=18.5
Q ss_pred EEecCCCCchHHHHHHHHHHHhcC
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVFGK 182 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~~~ 182 (875)
|.+---|.|||..++.+..++...
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTS
T ss_pred EECCCCCcchHHHHHHHHHHHHhC
Confidence 345566999999999998887543
No 319
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=20.85 E-value=1.2e+02 Score=25.66 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=11.4
Q ss_pred eEEEEecchhHHHHHHHHHHHcCCc
Q 044036 534 KILLFSYSVRMLDILEKFLIRKGYS 558 (875)
Q Consensus 534 KVLIFs~~~~~ld~L~~~L~~~g~~ 558 (875)
+|||..........+...|...|+.
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~ 28 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYT 28 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCe
Confidence 3444444444444444444444443
No 320
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=20.85 E-value=2.2e+02 Score=27.55 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=66.2
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHhcCCCCceEEEEecCCcccccCCCCCCEEEEcCC
Q 044036 532 GDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPSNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDP 611 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~~g~~~~~ldG~~~~~eR~~~i~~F~~~~~~~v~LiSt~agg~GLNL~~An~VI~~D~ 611 (875)
..|+++++.+..+.+.+++.+...+..+..+.|.. ++-.....+. .. +.. ++|| .||.+-=|...-.|=+.+.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l--~~~v~~a~~~-~~-~~d-VIIS--RGgta~~lr~~~~iPVV~I 76 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASL--TRASKIAFGL-QD-EVD-AIIS--RGATSDYIKKSVSIPSISI 76 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCH--HHHHHHHHHH-TT-TCS-EEEE--EHHHHHHHHTTCSSCEEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCH--HHHHHHHHHh-cC-CCe-EEEE--CChHHHHHHHhCCCCEEEE
Confidence 46899999999999999999988788888888885 3334444454 32 323 5666 4555555555434666677
Q ss_pred CCCchhHHHhhhcccccCC
Q 044036 612 NWNPAQDLQAQDRSFRFGQ 630 (875)
Q Consensus 612 ~WNp~~~~QaigR~~RiGQ 630 (875)
+.+.....+++-++-+.+.
T Consensus 77 ~~s~~Dil~al~~a~~~~~ 95 (196)
T 2q5c_A 77 KVTRFDTMRAVYNAKRFGN 95 (196)
T ss_dssp CCCHHHHHHHHHHHGGGCS
T ss_pred cCCHhHHHHHHHHHHhhCC
Confidence 8899999999999988876
No 321
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.62 E-value=1.3e+02 Score=26.49 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=21.0
Q ss_pred CCeEEEEecchhHHHHHHHHHHHcCCcE
Q 044036 532 GDKILLFSYSVRMLDILEKFLIRKGYSF 559 (875)
Q Consensus 532 g~KVLIFs~~~~~ld~L~~~L~~~g~~~ 559 (875)
..+|||..........|...|...|+.+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~ 32 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHC 32 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCe
Confidence 3577777777777888888888777763
No 322
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=20.57 E-value=87 Score=28.59 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCCeEEEEecch--hHHHHHHHHHHHcCCcEEEEeCCCC
Q 044036 531 KGDKILLFSYSV--RMLDILEKFLIRKGYSFSRLDGSTP 567 (875)
Q Consensus 531 ~g~KVLIFs~~~--~~ld~L~~~L~~~g~~~~~ldG~~~ 567 (875)
.+.+|||||..- .........|...|+++..++|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 567899999986 4667788889999999999999953
No 323
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=20.39 E-value=61 Score=33.85 Aligned_cols=38 Identities=21% Similarity=0.064 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHHHHHhhCCCCcEEecCCCCchHHHHHHHHH
Q 044036 137 LLEHQREGVKFLYKLYKNKHGGILGDDMGLGKTIQTIAFLA 177 (875)
Q Consensus 137 L~pyQ~~gv~~l~~~~~~~~ggILaDemGLGKTiqaiall~ 177 (875)
=|+.+.+.+.-++. .+...+|.-+.|.|||..+-.++.
T Consensus 16 gR~~el~~L~~~l~---~~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 16 DREEESRKLEESLE---NYPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp SCHHHHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---cCCeEEEECCCcCCHHHHHHHHHH
Confidence 35556665554443 245567888999999988777664
No 324
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=20.12 E-value=1.3e+02 Score=26.36 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=11.3
Q ss_pred eEEEEecchhHHHHHHHHHHHcCCc
Q 044036 534 KILLFSYSVRMLDILEKFLIRKGYS 558 (875)
Q Consensus 534 KVLIFs~~~~~ld~L~~~L~~~g~~ 558 (875)
+|||..........|...|...|+.
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~ 30 (142)
T 2qxy_A 6 TVMVVDESRITFLAVKNALEKDGFN 30 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGTCE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCE
Confidence 4444444444444444444444443
No 325
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=20.07 E-value=64 Score=32.23 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.9
Q ss_pred EEecCCCCchHHHHHHHHHHHh
Q 044036 159 ILGDDMGLGKTIQTIAFLAAVF 180 (875)
Q Consensus 159 ILaDemGLGKTiqaiall~~l~ 180 (875)
|.+---|.|||..++.+..++.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la 28 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLA 28 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHH
T ss_pred EECCCCCCcHHHHHHHHHHHHH
Confidence 4456679999999999988875
Done!