BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044037
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PMM|A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 382
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 92 LKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVW 138
L+L RV+++ G +G W + VG+ G+ ++G + D D W
Sbjct: 50 LRLDDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGDIEXRDIIDRW 96
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 30 AQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTA 66
+ +Y + NPE + + E QR G+N+T G A
Sbjct: 55 VRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXEGDA 91
>pdb|1DLP|A Chain A, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|B Chain B, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|C Chain C, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|D Chain D, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|E Chain E, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|F Chain F, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
Length = 236
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 133 DRDD-VWSSVAAGLGTGAVCRAA 154
DRDD VWS+ AG GTG CRA
Sbjct: 166 DRDDRVWSTNTAGKGTG--CRAV 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,226,376
Number of Sequences: 62578
Number of extensions: 208977
Number of successful extensions: 515
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 5
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)