Query 044037
Match_columns 187
No_of_seqs 167 out of 606
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 10:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3324 Mitochondrial import i 100.0 1.3E-53 2.9E-58 348.4 13.5 183 5-187 20-206 (206)
2 TIGR00983 3a0801s02tim23 mitoc 100.0 4.9E-46 1.1E-50 296.1 12.3 140 34-174 10-149 (149)
3 PTZ00236 mitochondrial import 100.0 1.3E-31 2.7E-36 215.9 13.7 131 50-186 8-138 (164)
4 TIGR00980 3a0801so1tim17 mitoc 100.0 2.2E-31 4.8E-36 215.7 13.5 135 46-186 2-136 (170)
5 PF02466 Tim17: Tim17/Tim22/Ti 99.9 1.4E-26 3.1E-31 177.7 13.1 127 54-180 1-127 (128)
6 KOG3225 Mitochondrial import i 99.9 2E-25 4.4E-30 177.6 6.1 119 57-175 40-161 (168)
7 KOG1652 Mitochondrial import i 99.9 1.1E-25 2.5E-30 182.1 2.0 132 48-185 4-135 (183)
8 COG5596 TIM22 Mitochondrial im 99.9 3.1E-24 6.7E-29 174.6 -0.2 146 31-179 33-188 (191)
9 KOG4608 Uncharacterized conser 99.2 2.6E-12 5.6E-17 108.8 1.6 161 15-184 36-208 (270)
10 COG5596 TIM22 Mitochondrial im 97.4 2.1E-05 4.6E-10 64.7 -1.1 94 63-160 38-132 (191)
11 TIGR00983 3a0801s02tim23 mitoc 95.9 0.041 8.9E-07 44.0 7.4 100 33-132 1-103 (149)
12 PF02466 Tim17: Tim17/Tim22/Ti 93.9 0.36 7.9E-06 36.5 7.5 125 59-183 2-126 (128)
13 KOG4096 Uncharacterized conser 92.8 0.067 1.5E-06 37.9 1.7 64 57-127 9-72 (75)
14 PF10247 Romo1: Reactive mitoc 92.4 0.068 1.5E-06 37.4 1.3 60 62-124 6-65 (67)
15 KOG1398 Uncharacterized conser 87.7 0.75 1.6E-05 42.4 4.2 46 105-150 297-342 (460)
16 PTZ00236 mitochondrial import 86.2 5 0.00011 32.7 7.8 129 49-182 10-138 (164)
17 PF03875 Statherin: Statherin; 79.5 1.6 3.4E-05 27.3 1.9 22 19-42 18-39 (42)
18 PF12732 YtxH: YtxH-like prote 79.1 2.9 6.3E-05 29.0 3.4 38 67-104 1-39 (74)
19 PF13436 Gly-zipper_OmpA: Glyc 78.8 4.7 0.0001 30.8 4.8 45 135-179 50-96 (118)
20 PF10439 Bacteriocin_IIc: Bact 65.7 16 0.00035 24.9 4.5 35 135-169 23-58 (65)
21 PF10247 Romo1: Reactive mitoc 63.0 8.6 0.00019 26.9 2.8 32 57-88 5-36 (67)
22 TIGR00980 3a0801so1tim17 mitoc 62.0 76 0.0017 26.0 8.6 127 50-181 9-135 (170)
23 PF13488 Gly-zipper_Omp: Glyci 61.6 24 0.00051 22.7 4.5 33 142-174 4-38 (46)
24 COG4980 GvpP Gas vesicle prote 58.7 28 0.00061 26.8 5.2 24 64-87 4-27 (115)
25 TIGR03789 pdsO proteobacterial 57.1 13 0.00028 31.9 3.5 36 139-174 41-77 (239)
26 PRK10510 putative outer membra 56.6 20 0.00043 30.1 4.5 36 140-175 38-78 (219)
27 PF11981 DUF3482: Domain of un 52.5 27 0.00059 30.8 4.8 40 140-179 151-190 (292)
28 PF13441 Gly-zipper_YMGG: YMGG 49.5 18 0.0004 23.3 2.4 33 141-173 7-41 (45)
29 TIGR02359 thiW thiW protein. L 48.3 1.4E+02 0.0031 24.0 8.1 62 65-142 37-98 (160)
30 PF05818 TraT: Enterobacterial 43.7 36 0.00077 29.0 4.0 34 140-173 89-124 (215)
31 KOG0754 Mitochondrial oxodicar 43.2 14 0.0003 32.4 1.5 39 112-150 177-215 (294)
32 KOG0762 Mitochondrial carrier 41.2 11 0.00024 33.0 0.6 29 54-83 3-31 (311)
33 PF07051 OCIA: Ovarian carcino 32.4 1.7E+02 0.0036 22.5 5.7 46 41-86 23-68 (111)
34 PF13548 DUF4126: Domain of un 31.9 2.9E+02 0.0062 22.6 8.4 65 118-182 50-121 (177)
35 PF11990 DUF3487: Protein of u 31.0 1.4E+02 0.003 23.0 5.2 39 141-179 34-72 (121)
36 TIGR03510 XapX XapX domain. Th 30.3 1.1E+02 0.0024 20.0 3.9 17 139-155 4-20 (49)
37 PRK10540 lipoprotein; Provisio 29.0 2.1E+02 0.0045 20.1 6.3 31 140-171 37-67 (72)
38 COG2979 Uncharacterized protei 28.8 1E+02 0.0022 26.3 4.4 42 134-175 31-72 (225)
39 PF13940 Ldr_toxin: Toxin Ldr, 28.4 45 0.00098 20.3 1.6 18 135-152 12-29 (35)
40 PF09955 DUF2189: Predicted in 27.1 2.9E+02 0.0062 21.1 8.3 98 75-177 16-118 (128)
41 TIGR00535 SAM_DCase S-adenosyl 26.3 15 0.00033 33.2 -1.0 42 41-82 109-156 (334)
42 PLN02524 S-adenosylmethionine 26.0 15 0.00032 33.5 -1.1 43 41-83 115-167 (355)
43 KOG1398 Uncharacterized conser 25.4 3.1E+02 0.0066 25.8 7.1 94 52-150 24-121 (460)
44 PF12076 Wax2_C: WAX2 C-termin 24.2 53 0.0012 26.8 1.9 85 15-107 74-161 (164)
45 PF03116 NQR2_RnfD_RnfE: NQR2, 23.7 1.8E+02 0.004 25.8 5.3 45 123-167 54-102 (313)
46 KOG4332 Predicted sugar transp 22.7 5.5E+02 0.012 23.5 8.1 112 63-174 74-215 (454)
47 PRK11404 putative PTS system 22.7 6.6E+02 0.014 23.8 10.3 14 65-78 302-315 (482)
48 PF11840 DUF3360: Protein of u 22.6 25 0.00055 32.7 -0.3 38 21-61 15-52 (492)
49 TIGR01427 PTS_IIC_fructo PTS s 22.5 5.7E+02 0.012 23.0 10.4 42 142-186 93-135 (346)
50 PRK10381 LPS O-antigen length 22.3 1.1E+02 0.0024 27.9 3.7 22 161-182 343-364 (377)
51 KOG3324 Mitochondrial import i 21.2 2.2E+02 0.0048 24.1 5.0 147 35-183 43-197 (206)
52 COG3765 WzzB Chain length dete 20.6 1.3E+02 0.0029 27.4 3.8 33 154-186 311-346 (347)
53 PF09769 ApoO: Apolipoprotein 20.4 46 0.00099 26.2 0.8 36 140-175 99-134 (158)
54 PF02382 RTX: RTX N-terminal d 20.3 2.3E+02 0.005 27.9 5.5 26 156-181 389-414 (653)
No 1
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-53 Score=348.44 Aligned_cols=183 Identities=51% Similarity=0.798 Sum_probs=175.4
Q ss_pred CCCCCCCCC-CCCCCCCCCcccCCCCc--ccccCCCCCCcccchhhhhhhcCcccchhhhhhhhhhHhhhhHHHHHHHHH
Q 044037 5 TPVGSDHER-DPETRLYNPYAELNLPA--QNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFS 81 (187)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~Py~~~~~~~--~~l~~~~~~pE~l~~ee~~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~ 81 (187)
.++.++|+. +..+++||||++++.+. ++||.+|++|||||+||..+++|.|+|++||.||++|+.|+++|+++|++.
T Consensus 20 ~n~~sg~~~~d~~~~~l~P~~~ld~~~n~d~ly~~~~~pefl~~~eg~~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~ 99 (206)
T KOG3324|consen 20 GNIGSGPSHADLDPRPLNPYQPLDKPLNVDYLYLLPDQPEFLFPEEGAIKRRGWFENLTFGTGWAYLTGSAIGAFNGLIL 99 (206)
T ss_pred CCCCCCCCcccCCccccCcccccccccccchhhhccCCccccCchhccccccchhhhhheeccchhccchhhhhHHHHHH
Confidence 355666655 57889999999998777 999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHhhhccCCchhHHHHHHHHHHHHhhhccChHHHH
Q 044037 82 AFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAA 161 (187)
Q Consensus 82 g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ 161 (187)
|+++++.+.+.|+|+|+|||+++|+|+.|||++|+++++|+++|++|++.|+|||++|+|+||++||+|||+++|+|+++
T Consensus 100 Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~Glr~~a 179 (206)
T KOG3324|consen 100 GLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTRGLRAAA 179 (206)
T ss_pred hhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hcCC
Q 044037 162 VAGAIGGLAAGAAVAAKQAVKR-YVPI 187 (187)
Q Consensus 162 ig~a~G~~la~a~~~~~~~~~r-~~~~ 187 (187)
+++++|++++++|++.|+.++| |+||
T Consensus 180 v~ga~g~~aa~aw~l~k~~~~~r~~~~ 206 (206)
T KOG3324|consen 180 VAGAVGGTAAAAWTLGKRIVKRRFVPI 206 (206)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhcCCC
Confidence 9999999999999999999999 9997
No 2
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=100.00 E-value=4.9e-46 Score=296.09 Aligned_cols=140 Identities=37% Similarity=0.600 Sum_probs=130.3
Q ss_pred cCCCCCCcccchhhhhhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhh
Q 044037 34 YKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNR 113 (187)
Q Consensus 34 ~~~~~~pE~l~~ee~~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~ 113 (187)
|...++||++|||++ .++|.|+|++||+||++|++|+++|+++|+++|+++.|.+.+.|+|+|++||+++++++++||+
T Consensus 10 ~l~~~~~~~~~~~g~-~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~ 88 (149)
T TIGR00983 10 YLVQEEDELSLLTGA-NPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNT 88 (149)
T ss_pred HHcCcchhhcCCCCC-CCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHH
Confidence 555555666666655 3899999999999999999999999999999999998777788999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHhhhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHH
Q 044037 114 VGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAA 174 (187)
Q Consensus 114 fgvig~lysg~e~~i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~ 174 (187)
||+|+++|+++||+++++|+|||+||+|+||++||++|++++|||++++++++|++++++|
T Consensus 89 ~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~~ 149 (149)
T TIGR00983 89 LGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGVW 149 (149)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999876
No 3
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.97 E-value=1.3e-31 Score=215.88 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=122.0
Q ss_pred hhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHh
Q 044037 50 HQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVV 129 (187)
Q Consensus 50 ~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~ 129 (187)
++++.| .+.-..|.+|.+|++.|+++++++|++++|.+ .|++..++.+++++++++++||+||++|+++||+++
T Consensus 8 r~pcp~--ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g----~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~ 81 (164)
T PTZ00236 8 REPCPD--RIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKG----ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQ 81 (164)
T ss_pred cCCCch--HHHHhccHHHHHHHHHHHHHHHHHHHHhCCCc----chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444 77777999999999999999999999998754 478999999999999999999999999999999999
Q ss_pred hhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 044037 130 AATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVP 186 (187)
Q Consensus 130 ~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~~r~~~ 186 (187)
++|+|||+||+++||++||++|++++||++++.++++|++++++++++..+++||.+
T Consensus 82 ~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~ 138 (164)
T PTZ00236 82 YLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQM 138 (164)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999864
No 4
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.97 E-value=2.2e-31 Score=215.75 Aligned_cols=135 Identities=21% Similarity=0.382 Sum_probs=124.8
Q ss_pred hhhhhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhh
Q 044037 46 EESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGME 125 (187)
Q Consensus 46 ee~~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e 125 (187)
||..+..+.| +.....|.+|.+|++.|++||+++|+++++.++ |++.++|+++.++++++++||+|+++|+++|
T Consensus 2 ~~~~r~pcp~--r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~----rl~g~l~av~~rap~~g~~Fav~g~lys~~e 75 (170)
T TIGR00980 2 EEYTREPCPY--RILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGE----KLVGAMRAIKTRAPVLGGNFAVWGGLFSTID 75 (170)
T ss_pred cccccCCCcc--hhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccc----hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4444566666 777789999999999999999999999886432 7889999999999999999999999999999
Q ss_pred hhHhhhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 044037 126 SGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVP 186 (187)
Q Consensus 126 ~~i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~~r~~~ 186 (187)
|+++++|+|||+||+++||++||++|++++|+|+++.+|++++++.++++....+++|+.+
T Consensus 76 c~i~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~~~~ 136 (170)
T TIGR00980 76 CAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTRWAA 136 (170)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 5
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.94 E-value=1.4e-26 Score=177.67 Aligned_cols=127 Identities=33% Similarity=0.519 Sum_probs=119.2
Q ss_pred cccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHhhhcc
Q 044037 54 SWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATD 133 (187)
Q Consensus 54 ~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~ 133 (187)
+|.|+.++.++.+|+.|+++|++.++.++....+.+.+.|.+++.++|.+++++++++++||+++++|+++||.++++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999999999999988665555677888999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHH
Q 044037 134 RDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQA 180 (187)
Q Consensus 134 k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~ 180 (187)
|||+||+++||++||++|+.+.|++.++.+++++++++++++..+++
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~ 127 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGRM 127 (128)
T ss_pred ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998875
No 6
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2e-25 Score=177.56 Aligned_cols=119 Identities=22% Similarity=0.254 Sum_probs=107.7
Q ss_pred chhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCCh---hHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHhhhcc
Q 044037 57 ENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDT---LKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATD 133 (187)
Q Consensus 57 e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~---~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~ 133 (187)
++|.+++-.+.++|..+|+++|+|.+..+.+.++| .++-+.++++.+++|+.+++++||++|++|+++||+||.+|.
T Consensus 40 n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RA 119 (168)
T KOG3225|consen 40 NSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRA 119 (168)
T ss_pred cchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHh
Confidence 47888999999999999999999999999654433 345567889999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHH
Q 044037 134 RDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAV 175 (187)
Q Consensus 134 k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~ 175 (187)
|+||+|+++|||+||+.+..++||+++++||+..+++++++.
T Consensus 120 K~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~id 161 (168)
T KOG3225|consen 120 KSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAAID 161 (168)
T ss_pred hhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHHHH
Confidence 999999999999999999999999999999999887766654
No 7
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-25 Score=182.15 Aligned_cols=132 Identities=18% Similarity=0.342 Sum_probs=122.0
Q ss_pred hhhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhh
Q 044037 48 SIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESG 127 (187)
Q Consensus 48 ~~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~ 127 (187)
..+.++.| ++.-..|.++.+|.+-|.+|++++|+++++.+. |+...++.+..+.+..|++||+||++||.+||+
T Consensus 4 ~sr~pcp~--riv~d~g~afamg~igG~~f~~ikG~~nap~G~----r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~ 77 (183)
T KOG1652|consen 4 YSREPCPI--RIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGA----RLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCA 77 (183)
T ss_pred ccCCCCCc--eeeccccchhhhcccccceeeeeeeeecCCccc----ccccchhhhhccCcccccceeeeechhhHHHHH
Confidence 34556666 666678999999999999999999999887554 777889999999999999999999999999999
Q ss_pred HhhhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044037 128 VVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYV 185 (187)
Q Consensus 128 i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~~r~~ 185 (187)
+..+|+|||.||+|++|++||+++..+.|+++++.++++++++.+.++.+...++|+.
T Consensus 78 Lv~~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g~~~t~~~ 135 (183)
T KOG1652|consen 78 LVAIRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLGIQVTKIA 135 (183)
T ss_pred HHHHhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999875
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.1e-24 Score=174.62 Aligned_cols=146 Identities=25% Similarity=0.333 Sum_probs=133.7
Q ss_pred ccccCCCCCCcccchhhh----------hhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHH
Q 044037 31 QNLYKLPTNPEFLFSEES----------IHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVL 100 (187)
Q Consensus 31 ~~l~~~~~~pE~l~~ee~----------~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~l 100 (187)
.+|-++-+.-+|+..++. ....+.|.+++|+.|+..++.|.-+|++|| |+.+.....++++|++..+
T Consensus 33 ~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwG---gl~~~i~~~~~r~q~~~~~ 109 (191)
T COG5596 33 EKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWG---GLFSTIDCTPFRLQLKEQL 109 (191)
T ss_pred hHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCcccccccc---ceeeccccchHHHHHhhcc
Confidence 456667677778877776 236788999999999999999999999999 8887777789999999999
Q ss_pred HhhccccccchhhHHHHHHHHHhhhhhHhhhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHH
Q 044037 101 NSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQ 179 (187)
Q Consensus 101 n~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~ 179 (187)
|.+++++.+.||+||++|++|+++||.|+.+|+|||+.|+|.||+.||++|+.++|+|++.+++++.++.++.|+..++
T Consensus 110 ~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~s~~~~~~~~ 188 (191)
T COG5596 110 NNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAFSAGITLAMK 188 (191)
T ss_pred ccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhhhhhHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988765
No 9
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=2.6e-12 Score=108.82 Aligned_cols=161 Identities=23% Similarity=0.289 Sum_probs=122.0
Q ss_pred CCCCCCCCcccCCCCcccccCCCCCCcccchhhhhhhc-Ccccchhhhhh-hhhhHhhhhHHHHHHHHHHhhcccCC---
Q 044037 15 PETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQR-RSWGENLTFYT-GTAYLAGSVSGAAIGLFSAFKSMEKG--- 89 (187)
Q Consensus 15 ~~~~~~~Py~~~~~~~~~l~~~~~~pE~l~~ee~~~~~-r~~~e~l~~~t-G~~y~~G~~~G~~~G~~~g~~~~~~g--- 89 (187)
..+..+.||.-...||. |.||=| .+ +... -+|.-+.++++ .+++++|.+.|++-+...+-.....+
T Consensus 36 ~e~~~~k~~eave~ppe------Tgwerl--k~-lfg~dis~e~a~v~~v~a~~flgG~~~ggat~s~~A~~~y~~nsqa 106 (270)
T KOG4608|consen 36 EERQKRKPYEAVEYPPE------TGWERL--KE-LFGKDISKELANVCKVAATAFLGGWVYGGATASIHAKQQYIENSQA 106 (270)
T ss_pred HhhcccccccccCCCCc------cchHHH--HH-HhCCCcchhhHHHHHHHHHhhhhheeeccchHhHHHHHHHHhccHH
Confidence 45566777775544443 555533 11 1112 25644456665 67799999999999888776654211
Q ss_pred -------ChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHhhhccCCchhHHHHHHHHHHHHhhhccChHHHHH
Q 044037 90 -------DTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAV 162 (187)
Q Consensus 90 -------~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~i 162 (187)
+-.|-...+......|.|.+||.+.|++...|..+...+..||+|||.+|-++||++||++|+..-|++..+-
T Consensus 107 ~ky~sh~davk~~~d~air~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa 186 (270)
T KOG4608|consen 107 EKYHSHFDAVKSAHDAAIRGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAA 186 (270)
T ss_pred HHhhChHHHHHHHHHHHHHHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhh
Confidence 1223334566777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 044037 163 AGAIGGLAAGAAVAAKQAVKRY 184 (187)
Q Consensus 163 g~a~G~~la~a~~~~~~~~~r~ 184 (187)
+.++|+++.+..++.-.+++++
T Consensus 187 ~vilG~~lG~tv~~~l~l~q~a 208 (270)
T KOG4608|consen 187 GVILGALLGTTVGGLLMLFQKA 208 (270)
T ss_pred cceeehhhcchHHHHHHHHHHH
Confidence 9999998888888877777665
No 10
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=2.1e-05 Score=64.75 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=68.8
Q ss_pred hhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHH-HHHHHHHhhhhhHhhhccCCchhHHH
Q 044037 63 TGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVG-VIGLIYAGMESGVVAATDRDDVWSSV 141 (187)
Q Consensus 63 tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fg-vig~lysg~e~~i~~~R~k~D~~Nsv 141 (187)
-+.++-.+.+.+.++.-++|++...... ++..-+...+.+.+-.|.+|| +||.+++.++|...++|.+.|.||..
T Consensus 38 ~~~~~~~~~i~k~~~s~l~G~~~g~~~g----~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~ 113 (191)
T COG5596 38 FMKAFSYSCIGKSALSGLKGFRLGGPSG----GFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAG 113 (191)
T ss_pred hccchhhcchhhhhhhcccccccccccc----cchhhcccccccccccCccccccccceeeccccchHHHHHhhcccccc
Confidence 3444445566666666666666543221 122234455566777888888 99999999999999999999999999
Q ss_pred HHHHHHHHHhhhccChHHH
Q 044037 142 AAGLGTGAVCRAARGIRSA 160 (187)
Q Consensus 142 ~AG~~TGal~~~~~G~ra~ 160 (187)
..|+.||..+....++++.
T Consensus 114 ~rg~ftG~n~GvlGl~y~~ 132 (191)
T COG5596 114 KRGFFTGKNLGVLGLIYAG 132 (191)
T ss_pred ccccccccccceeeeeccc
Confidence 9999999998887765443
No 11
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=95.89 E-value=0.041 Score=44.03 Aligned_cols=100 Identities=20% Similarity=0.054 Sum_probs=62.9
Q ss_pred ccCCCCCCcccchhhhhh--hcCcccchhhhh-hhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhcccccc
Q 044037 33 LYKLPTNPEFLFSEESIH--QRRSWGENLTFY-TGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRS 109 (187)
Q Consensus 33 l~~~~~~pE~l~~ee~~~--~~r~~~e~l~~~-tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~ 109 (187)
||.||++|||||+||... ++..--.+-... .=-...+..++|.+.|.+.|+...-.+.+.......-+|.+.+...+
T Consensus 1 l~~l~~~~~~l~~~~~~~~~~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~ 80 (149)
T TIGR00983 1 LAPLDKDPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTR 80 (149)
T ss_pred CCCCCCCcHHHcCcchhhcCCCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 577899999999998631 111111123332 23335566889999999999986533333222334557777777777
Q ss_pred chhhHHHHHHHHHhhhhhHhhhc
Q 044037 110 WGNRVGVIGLIYAGMESGVVAAT 132 (187)
Q Consensus 110 ~gn~fgvig~lysg~e~~i~~~R 132 (187)
-+-++|---++...+=+++|..=
T Consensus 81 ~g~~~G~~~g~~g~lys~~e~~i 103 (149)
T TIGR00983 81 RGPFWGNTLGILALVYNGINSII 103 (149)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666666665543
No 12
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=93.88 E-value=0.36 Score=36.48 Aligned_cols=125 Identities=23% Similarity=0.097 Sum_probs=87.5
Q ss_pred hhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHhhhccCCchh
Q 044037 59 LTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVW 138 (187)
Q Consensus 59 l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~k~D~~ 138 (187)
|..++-.+.+.|++.|.++|.+.+..+...........++.++.+-+...+.+...|..-+.+.++=++++..=.+-=-.
T Consensus 2 c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k 81 (128)
T PF02466_consen 2 CPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGK 81 (128)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44567888999999999999999998653222223344556777777777777777777777777777777664333345
Q ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044037 139 SSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKR 183 (187)
Q Consensus 139 Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~~r 183 (187)
+-..-.++.|++=.+--|.+.-..+.+.++++.++....=..++|
T Consensus 82 ~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~ 126 (128)
T PF02466_consen 82 DDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGR 126 (128)
T ss_pred cccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888888888777667777777777777766666655544444
No 13
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.85 E-value=0.067 Score=37.91 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=40.8
Q ss_pred chhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhh
Q 044037 57 ENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESG 127 (187)
Q Consensus 57 e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~ 127 (187)
|++-...-+++.+|...|.++|-|.+++.-+ |-...++.++|.-...+.+||.+-.+=+++.|.
T Consensus 9 dKikmG~~mG~avG~a~G~lfGgf~~lR~g~-------~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 9 DKIKMGLMMGGAVGGATGALFGGFAALRYGP-------RGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred HHHHHHHHHHhhhhhhhhhhccchhheeecC-------ChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 3333333344444555555555556655432 334668889999999999999888887777765
No 14
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=92.42 E-value=0.068 Score=37.40 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=34.8
Q ss_pred hhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhh
Q 044037 62 YTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGM 124 (187)
Q Consensus 62 ~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~ 124 (187)
+.-+++++|..+|++.|++-|..+.-. .++|-+.+++.++|.-...|.+||.+-.+=+.+
T Consensus 6 kikmG~~MG~~VG~~~G~l~G~~~~~r---~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~I 65 (67)
T PF10247_consen 6 KIKMGFMMGGAVGGAFGALFGTFSAFR---YGARGRGLMRTLGKYMLGSGATFGFFMSIGSVI 65 (67)
T ss_pred HHHHHHHHhhHHHhhhhhhhhhHHHhc---cCCCCcchHhHHhHHHhcchhHHHHHHhhhccc
Confidence 345566666666666665555544310 122234567778888888888888765544433
No 15
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.70 E-value=0.75 Score=42.38 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=41.1
Q ss_pred cccccchhhHHHHHHHHHhhhhhHhhhccCCchhHHHHHHHHHHHH
Q 044037 105 HSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAV 150 (187)
Q Consensus 105 k~g~~~gn~fgvig~lysg~e~~i~~~R~k~D~~Nsv~AG~~TGal 150 (187)
|...+.|-=+|.+.++|.++.|.+.+.+.+||..|++.||.+++.-
T Consensus 297 renlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~S 342 (460)
T KOG1398|consen 297 RENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLS 342 (460)
T ss_pred cccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhhe
Confidence 5566777778999999999999999999999999999999998854
No 16
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=86.16 E-value=5 Score=32.71 Aligned_cols=129 Identities=10% Similarity=0.010 Sum_probs=91.0
Q ss_pred hhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhH
Q 044037 49 IHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGV 128 (187)
Q Consensus 49 ~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i 128 (187)
.++.|.+ |++--.-.++.+.|++.+.+.|+........-.. -++.+-.....-+..+|.--++..++.+.++..=
T Consensus 10 pcp~ri~-dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g----~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R 84 (164)
T PTZ00236 10 PCPDRII-EDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSG----GFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLR 84 (164)
T ss_pred CCchHHH-HhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHH----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777 5555555778889999999999988865533211 1233333344455556666688888999998887
Q ss_pred hhhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044037 129 VAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVK 182 (187)
Q Consensus 129 ~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~~ 182 (187)
.+---..-.+-..+.|++-++--..++=.+++++++++.+++.++..++++++.
T Consensus 85 ~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~ 138 (164)
T PTZ00236 85 GKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQM 138 (164)
T ss_pred ccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666656667888888888655544454578899999999999999888887654
No 17
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=79.53 E-value=1.6 Score=27.34 Aligned_cols=22 Identities=41% Similarity=0.913 Sum_probs=18.9
Q ss_pred CCCCcccCCCCcccccCCCCCCcc
Q 044037 19 LYNPYAELNLPAQNLYKLPTNPEF 42 (187)
Q Consensus 19 ~~~Py~~~~~~~~~l~~~~~~pE~ 42 (187)
.|.||+.+ ++++||-.|-+|.|
T Consensus 18 rygpyqp~--peq~lypqpyqp~y 39 (42)
T PF03875_consen 18 RYGPYQPF--PEQPLYPQPYQPPY 39 (42)
T ss_pred ccCCcCCC--CCCcCCCCCCCCcc
Confidence 48899987 88999999988865
No 18
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=79.09 E-value=2.9 Score=29.03 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=22.2
Q ss_pred hHhhhhHHHHHHHHHHhhccc-CCChhHHHHHHHHHhhc
Q 044037 67 YLAGSVSGAAIGLFSAFKSME-KGDTLKLKINRVLNSSG 104 (187)
Q Consensus 67 y~~G~~~G~~~G~~~g~~~~~-~g~~~k~r~~~~ln~~~ 104 (187)
|+.|+++|++.|..-|+..+| .|...+-++....+.+.
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~ 39 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLK 39 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 456777777777777777665 34444444554444443
No 19
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=78.85 E-value=4.7 Score=30.81 Aligned_cols=45 Identities=33% Similarity=0.366 Sum_probs=31.0
Q ss_pred CchhHHHHHHHHHHHHhhhccC--hHHHHHHHHHHHHHHHHHHHHHH
Q 044037 135 DDVWSSVAAGLGTGAVCRAARG--IRSAAVAGAIGGLAAGAAVAAKQ 179 (187)
Q Consensus 135 ~D~~Nsv~AG~~TGal~~~~~G--~ra~~ig~a~G~~la~a~~~~~~ 179 (187)
++.....+.|++.|++..+-.| .+.+++|+++|+++.+++-....
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~Ga~~G~~~g~~~~ 96 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAGAAVGAAAGAARG 96 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHhhhhhh
Confidence 4445556667777777776554 48888888888888777665543
No 20
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=65.72 E-value=16 Score=24.89 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=23.6
Q ss_pred CchhHHHHHHHHHHHHhhhccCh-HHHHHHHHHHHH
Q 044037 135 DDVWSSVAAGLGTGAVCRAARGI-RSAAVAGAIGGL 169 (187)
Q Consensus 135 ~D~~Nsv~AG~~TGal~~~~~G~-ra~~ig~a~G~~ 169 (187)
.+.+..++.++++|++.....|+ ..++.++++|+.
T Consensus 23 ~~~~~~~~~~~~~G~~~G~~~g~~~g~~~Ga~~G~~ 58 (65)
T PF10439_consen 23 GNCVGGVGGGAAGGAAAGAAGGPPVGAVAGAIVGAA 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 34566788889999999888887 444444444444
No 21
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=63.01 E-value=8.6 Score=26.87 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=27.3
Q ss_pred chhhhhhhhhhHhhhhHHHHHHHHHHhhcccC
Q 044037 57 ENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEK 88 (187)
Q Consensus 57 e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~ 88 (187)
|++-...-++..+|..+|.++|.+..++.-.+
T Consensus 5 ~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~ 36 (67)
T PF10247_consen 5 DKIKMGFMMGGAVGGAFGALFGTFSAFRYGAR 36 (67)
T ss_pred HHHHHHHHHhhHHHhhhhhhhhhHHHhccCCC
Confidence 66777777888899999999999999998753
No 22
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=62.04 E-value=76 Score=25.95 Aligned_cols=127 Identities=12% Similarity=0.053 Sum_probs=78.0
Q ss_pred hhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHh
Q 044037 50 HQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVV 129 (187)
Q Consensus 50 ~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~ 129 (187)
++-|.. |++--.-.++.+.|.+.|.+.|+.+.-....... -++.+.....+-+-.++.--++...+.+.++..-.
T Consensus 9 cp~r~~-d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g----~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~ 83 (170)
T TIGR00980 9 CPYRIL-DDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVG----AMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRK 83 (170)
T ss_pred CcchhH-HhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhH----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444 3343344666677777777777777622111111 23334444556666677777777888888877666
Q ss_pred hhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHh
Q 044037 130 AATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAV 181 (187)
Q Consensus 130 ~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~ 181 (187)
+---..-.+-..+.|++-++==..++=...+++++++-+++-++-.++.++.
T Consensus 84 KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~~~ 135 (170)
T TIGR00980 84 KEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTRWA 135 (170)
T ss_pred ccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5444555666777777766544445556777777777777777777766654
No 23
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=61.60 E-value=24 Score=22.69 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhccC--hHHHHHHHHHHHHHHHHH
Q 044037 142 AAGLGTGAVCRAARG--IRSAAVAGAIGGLAAGAA 174 (187)
Q Consensus 142 ~AG~~TGal~~~~~G--~ra~~ig~a~G~~la~a~ 174 (187)
.-|++.|++.....| .+.+++++++|+++.+.+
T Consensus 4 ~iGA~~Ga~iG~~~g~~~~ga~iGa~vGa~~G~~i 38 (46)
T PF13488_consen 4 AIGAAAGAAIGAATGGPGKGAAIGAAVGAAVGAAI 38 (46)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 345566666544444 488888888888876654
No 24
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=58.70 E-value=28 Score=26.79 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.9
Q ss_pred hhhhHhhhhHHHHHHHHHHhhccc
Q 044037 64 GTAYLAGSVSGAAIGLFSAFKSME 87 (187)
Q Consensus 64 G~~y~~G~~~G~~~G~~~g~~~~~ 87 (187)
+..++.|.++|++.|...++..+|
T Consensus 4 ~~~~l~G~liGgiiGa~aaLL~AP 27 (115)
T COG4980 4 GKDFLFGILIGGIIGAAAALLFAP 27 (115)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCC
Confidence 456789999999999999999886
No 25
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=57.09 E-value=13 Score=31.95 Aligned_cols=36 Identities=36% Similarity=0.540 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhh-ccChHHHHHHHHHHHHHHHHH
Q 044037 139 SSVAAGLGTGAVCRA-ARGIRSAAVAGAIGGLAAGAA 174 (187)
Q Consensus 139 Nsv~AG~~TGal~~~-~~G~ra~~ig~a~G~~la~a~ 174 (187)
+..+.|+.+|++... -.||..+++|+++|++++..+
T Consensus 41 ~~~~~g~~~ga~~g~~~gg~~G~~~G~~~G~~~g~~~ 77 (239)
T TIGR03789 41 QEALIGLGSGALLGALVGGPVGAIIGGITGGLIGQAV 77 (239)
T ss_pred cchhhhHHHHHHHhhhhccHHHHHHHHHHHHHhhhhc
Confidence 344446667777664 457888888888888776654
No 26
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=56.65 E-value=20 Score=30.13 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhccC-----hHHHHHHHHHHHHHHHHHH
Q 044037 140 SVAAGLGTGAVCRAARG-----IRSAAVAGAIGGLAAGAAV 175 (187)
Q Consensus 140 sv~AG~~TGal~~~~~G-----~ra~~ig~a~G~~la~a~~ 175 (187)
..++|+++|++...-.| -+.+++|+++|+++.+++.
T Consensus 38 ga~~Ga~~Ga~~G~~~g~~~~~~~~a~~ga~~G~~~G~~~g 78 (219)
T PRK10510 38 GAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVG 78 (219)
T ss_pred hhHHHHHHHHHHHhhhcCCCcccchhhhHhHHHhhhhhhhh
Confidence 45566666776655433 2567778777776655443
No 27
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=52.53 E-value=27 Score=30.80 Aligned_cols=40 Identities=38% Similarity=0.410 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHH
Q 044037 140 SVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQ 179 (187)
Q Consensus 140 sv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~ 179 (187)
..++|+++|+-.=...|=-+...|+++|++++++|...+.
T Consensus 151 GaaaGAa~GagiDl~tgG~SLG~gaaiGal~Gg~~~~~~~ 190 (292)
T PF11981_consen 151 GAAAGAAAGAGIDLATGGLSLGAGAAIGALAGGAWQGGRR 190 (292)
T ss_pred hHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhh
Confidence 5667777776654444444445556666666666554444
No 28
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=49.46 E-value=18 Score=23.32 Aligned_cols=33 Identities=42% Similarity=0.509 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhcc--ChHHHHHHHHHHHHHHHH
Q 044037 141 VAAGLGTGAVCRAAR--GIRSAAVAGAIGGLAAGA 173 (187)
Q Consensus 141 v~AG~~TGal~~~~~--G~ra~~ig~a~G~~la~a 173 (187)
...|+.+|++...-. +.+.+++++++|++...+
T Consensus 7 A~iGA~~GA~iG~~~g~~~~GA~iGA~~Ga~~G~~ 41 (45)
T PF13441_consen 7 AAIGAAAGAVIGAIIGNGGKGAAIGAAAGALAGAA 41 (45)
T ss_pred HHHHHHHHHHHHHhhCCCcccchhhhhhhhhhhhh
Confidence 344555555554444 488888888888876554
No 29
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=48.33 E-value=1.4e+02 Score=23.99 Aligned_cols=62 Identities=21% Similarity=0.311 Sum_probs=34.0
Q ss_pred hhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHhhhccCCchhHHHH
Q 044037 65 TAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVA 142 (187)
Q Consensus 65 ~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~k~D~~Nsv~ 142 (187)
...+.|..+|=.+|...+.-. .+++.+.. -+.-++..|.+..++=+++-+-|.|++++..+.
T Consensus 37 ~~vlaavllGP~~g~~~a~i~------------~ll~~l~~----~g~~~afpg~~~~a~laGliyrk~~~~~~a~~g 98 (160)
T TIGR02359 37 VNVIAGVLLGPWYALAVAFII------------GLLRNTLG----LGTVLAFPGGMPGALLAGLLYRFGRKHYWASLG 98 (160)
T ss_pred HHHHHHHHHchHHHHHHHHHH------------HHHHHHhC----CCchHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 345677777888888777652 23443321 123345566666666666654333555544333
No 30
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=43.70 E-value=36 Score=28.98 Aligned_cols=34 Identities=35% Similarity=0.405 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhc-cChHHHHHH-HHHHHHHHHH
Q 044037 140 SVAAGLGTGAVCRAA-RGIRSAAVA-GAIGGLAAGA 173 (187)
Q Consensus 140 sv~AG~~TGal~~~~-~G~ra~~ig-~a~G~~la~a 173 (187)
+.++|+++|+..... .+...+++| ++.|+++..+
T Consensus 89 ga~~Ga~~G~~~g~~~~~~~g~~~G~GlaGalig~~ 124 (215)
T PF05818_consen 89 GALAGAATGAAIGAYNSGSAGAAIGAGLAGALIGMI 124 (215)
T ss_pred hHHHHhHHhhhhccccCCccchhhhhhHHHhHHHHH
Confidence 456677777766533 356667777 5555444443
No 31
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion]
Probab=43.21 E-value=14 Score=32.43 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHhhhhhHhhhccCCchhHHHHHHHHHHHH
Q 044037 112 NRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAV 150 (187)
Q Consensus 112 n~fgvig~lysg~e~~i~~~R~k~D~~Nsv~AG~~TGal 150 (187)
++++.+|++|+.-+..=+.--.....+|-+++|+++|.+
T Consensus 177 wn~gYFG~y~~vrn~vP~~k~~~~~~~~~~i~g~l~gtl 215 (294)
T KOG0754|consen 177 WNMGYFGFYYQVRNSVPSAKDKTLEIRRKLIIGALAGTL 215 (294)
T ss_pred eecchhhhHHHHHhhCCCccCcHHHHHHHHHHHHhhhhh
Confidence 456778877777665544333334578889999988765
No 32
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion]
Probab=41.21 E-value=11 Score=32.99 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=20.8
Q ss_pred cccchhhhhhhhhhHhhhhHHHHHHHHHHh
Q 044037 54 SWGENLTFYTGTAYLAGSVSGAAIGLFSAF 83 (187)
Q Consensus 54 ~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~ 83 (187)
.|.|-+..+.+.-|+.|+ +|++-|++.|-
T Consensus 3 ~~~e~~~~s~~ldfvAG~-~GGvAGVl~Gh 31 (311)
T KOG0762|consen 3 FWPEFMATSMGLDFVAGG-LGGVAGVLVGH 31 (311)
T ss_pred cchHhhhHHHHHHHHhcc-ccccceeeecC
Confidence 476766667777788776 67777877774
No 33
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=32.38 E-value=1.7e+02 Score=22.47 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=22.4
Q ss_pred cccchhhhhhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcc
Q 044037 41 EFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSM 86 (187)
Q Consensus 41 E~l~~ee~~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~ 86 (187)
.|.+.||..+.=|-+-++..++-+.=+.+++++..-..+..|...+
T Consensus 23 ~~~~T~EE~kvlrEC~~ESFwyRslPls~~s~~~t~~lv~~G~l~~ 68 (111)
T PF07051_consen 23 PYQLTEEERKVLRECNEESFWYRSLPLSAGSMLVTQGLVKKGYLKS 68 (111)
T ss_pred CccCCHHHHHHHHHHHHhhhHhccCcHHHHHHHHHHHHHHcCcccC
Confidence 4444555433333333344445455555555555555555665543
No 34
>PF13548 DUF4126: Domain of unknown function (DUF4126)
Probab=31.90 E-value=2.9e+02 Score=22.64 Aligned_cols=65 Identities=25% Similarity=0.065 Sum_probs=43.2
Q ss_pred HHHHHhhhhhHhhhccCCchhHH------HHHHHHHHHHhhhccChHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 044037 118 GLIYAGMESGVVAATDRDDVWSS------VAAGLGTGAVCRAARGIRS-AAVAGAIGGLAAGAAVAAKQAVK 182 (187)
Q Consensus 118 g~lysg~e~~i~~~R~k~D~~Ns------v~AG~~TGal~~~~~G~ra-~~ig~a~G~~la~a~~~~~~~~~ 182 (187)
-.+...+|-.-+|+-.-|..++. +++|++.++.......+.. ..++.+.|+..+++....|-...
T Consensus 50 ~~v~~v~E~~adkiP~vd~~~d~i~~~~r~~aGall~aa~~~~~~~~~~~~la~i~Gg~~A~~~~~~~a~~R 121 (177)
T PF13548_consen 50 LGVLAVVEFIADKIPWVDSRLDAIQTPIRPIAGALLAAAVAGEMDPAVQWALAAIAGGGVAGAVHAAKAGTR 121 (177)
T ss_pred HHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999877776664 4566666555444444433 33678888888888877765443
No 35
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=30.96 E-value=1.4e+02 Score=22.98 Aligned_cols=39 Identities=28% Similarity=0.262 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHH
Q 044037 141 VAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQ 179 (187)
Q Consensus 141 v~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~ 179 (187)
.++|+..|..+..-.|+-++..++++-+.+.+++...+.
T Consensus 34 ~~~g~~~gl~la~~~g~~a~~pt~~ll~~~~~v~~gg~~ 72 (121)
T PF11990_consen 34 FVAGLVVGLPLALLTGWWAMIPTGALLGPILGVFVGGKL 72 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455566666666666777777777777777777766654
No 36
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=30.31 E-value=1.1e+02 Score=20.03 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhcc
Q 044037 139 SSVAAGLGTGAVCRAAR 155 (187)
Q Consensus 139 Nsv~AG~~TGal~~~~~ 155 (187)
=++++|+++|.+|+.-.
T Consensus 4 lsl~~G~~vG~~~~~l~ 20 (49)
T TIGR03510 4 LSLGAGLLVGALYSLLK 20 (49)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 47899999999987643
No 37
>PRK10540 lipoprotein; Provisional
Probab=28.98 E-value=2.1e+02 Score=20.11 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHHH
Q 044037 140 SVAAGLGTGAVCRAARGIRSAAVAGAIGGLAA 171 (187)
Q Consensus 140 sv~AG~~TGal~~~~~G~ra~~ig~a~G~~la 171 (187)
...+|++.|++.. ...+..+++++++|+.+.
T Consensus 37 Ga~~Ga~~Ga~~g-~g~~~g~~~Ga~~G~~~G 67 (72)
T PRK10540 37 GAGAGALGGAVLT-DGSTLGTLGGAAVGGVIG 67 (72)
T ss_pred HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHh
Confidence 3456777777763 123556666666666543
No 38
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.77 E-value=1e+02 Score=26.32 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=26.9
Q ss_pred CCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHH
Q 044037 134 RDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAV 175 (187)
Q Consensus 134 k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~ 175 (187)
..+..|++.+|++.+.++...++-|-..-..-+|++.+....
T Consensus 31 ~~~~l~p~~~GALaa~Llg~K~~rk~~~k~~k~GglAAlG~l 72 (225)
T COG2979 31 LGSLLNPLGGGALAAMLLGNKSARKLGGKATKLGGLAALGAL 72 (225)
T ss_pred cccccCcchhHHHHHHHHcCcchHHHHhhHhhhhhHHHHHHH
Confidence 456789999999999999888754433333333433333333
No 39
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=28.36 E-value=45 Score=20.31 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=15.2
Q ss_pred CchhHHHHHHHHHHHHhh
Q 044037 135 DDVWSSVAAGLGTGAVCR 152 (187)
Q Consensus 135 ~D~~Nsv~AG~~TGal~~ 152 (187)
||..-+++||.+++.+..
T Consensus 12 hDLAAP~iagIi~s~iv~ 29 (35)
T PF13940_consen 12 HDLAAPIIAGIIASLIVG 29 (35)
T ss_pred HHhHhHHHHHHHHHHHHH
Confidence 788889999999988754
No 40
>PF09955 DUF2189: Predicted integral membrane protein (DUF2189); InterPro: IPR018692 This family includes several hypothetical prokaryotic proteins. Some are described as putative cytochrome c oxidases.
Probab=27.12 E-value=2.9e+02 Score=21.14 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=52.8
Q ss_pred HHHHHHHHhhcccCCChhHHHHHHHHHh-hccccccchhhHHHHHHHHHh---hhhhH-hhhccCCchhHHHHHHHHHHH
Q 044037 75 AAIGLFSAFKSMEKGDTLKLKINRVLNS-SGHSGRSWGNRVGVIGLIYAG---MESGV-VAATDRDDVWSSVAAGLGTGA 149 (187)
Q Consensus 75 ~~~G~~~g~~~~~~g~~~k~r~~~~ln~-~~k~g~~~gn~fgvig~lysg---~e~~i-~~~R~k~D~~Nsv~AG~~TGa 149 (187)
.+.|+++-.|.-+++++. .+.+.+.. ..++......--.++.++|-. .-..+ ..+-+..|..| ...+..+
T Consensus 16 ~A~GlYeiSrr~e~G~~~--~~~~~l~~~~~~~~~~l~~~~~vl~l~~~~W~~~a~~i~a~~~G~~~~~~--~~~~~~~- 90 (128)
T PF09955_consen 16 LAVGLYEISRRRERGEPP--SWGDSLSALWRRNLRQLAGFGLVLILIFLIWLRVAALIFALFFGPLPIPD--LSEFLAG- 90 (128)
T ss_pred HHHHHHHHHHHHhCCCCC--CHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--HHHHHHH-
Confidence 567889988887666543 44566666 333333333222233333322 11122 22223333322 3334433
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHH
Q 044037 150 VCRAARGIRSAAVAGAIGGLAAGAAVAA 177 (187)
Q Consensus 150 l~~~~~G~ra~~ig~a~G~~la~a~~~~ 177 (187)
++-...|+.-.+++.++|++++...-+.
T Consensus 91 ~~~t~~g~~~li~~~~vG~v~A~i~f~i 118 (128)
T PF09955_consen 91 VFFTPRGWGFLIVGTLVGGVFAAIVFAI 118 (128)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4455679999999999999888765443
No 41
>TIGR00535 SAM_DCase S-adenosylmethionine decarboxylase proenzyme, eukaryotic form. This protein is a pyruvoyl-dependent enzyme. The proenzyme is cleaved at a Ser residue that becomes a pyruvoyl group active site.
Probab=26.27 E-value=15 Score=33.20 Aligned_cols=42 Identities=26% Similarity=0.456 Sum_probs=31.9
Q ss_pred cccchhhhhhhcCcccchhhh-----hhhhhhHhhhhHHH-HHHHHHH
Q 044037 41 EFLFSEESIHQRRSWGENLTF-----YTGTAYLAGSVSGA-AIGLFSA 82 (187)
Q Consensus 41 E~l~~ee~~~~~r~~~e~l~~-----~tG~~y~~G~~~G~-~~G~~~g 82 (187)
.|+||+.+..+.|+|.|++.+ ..|.+|++|-.-.. =|.++.+
T Consensus 109 sf~fP~~Q~~pH~sf~eEV~~L~~~F~~g~AY~~G~~~~~~~WhlY~~ 156 (334)
T TIGR00535 109 CFLFPCAQPAIHRNFSEEVAYLNKFFGNGKAYVVGDPAKPQKWHLYVA 156 (334)
T ss_pred cccCcccCCCcCCCHHHHHHHHHHhcCCCceEEeCCCCCCCceEEEeC
Confidence 689999988888999999876 25899999976553 5555543
No 42
>PLN02524 S-adenosylmethionine decarboxylase
Probab=26.04 E-value=15 Score=33.51 Aligned_cols=43 Identities=28% Similarity=0.524 Sum_probs=32.4
Q ss_pred cccchhhhhhhcCcccchhhh---------hhhhhhHhhhhH-HHHHHHHHHh
Q 044037 41 EFLFSEESIHQRRSWGENLTF---------YTGTAYLAGSVS-GAAIGLFSAF 83 (187)
Q Consensus 41 E~l~~ee~~~~~r~~~e~l~~---------~tG~~y~~G~~~-G~~~G~~~g~ 83 (187)
.|+||+.+..+.|+|.|+..+ ..|.+|++|-.. +-=|.++.+-
T Consensus 115 nf~fP~~Q~~pH~sf~eEV~~L~~~F~~l~~~G~AY~~G~~~~~~hW~lY~a~ 167 (355)
T PLN02524 115 SFIFPGAQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDPDKGQKWHVYSAS 167 (355)
T ss_pred cccCcccCCCcccCHHHHHHHHHHhcccccCCceEEEeCCCCCCCceEEEeCC
Confidence 588899887778999999776 258899999863 6666666554
No 43
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.37 E-value=3.1e+02 Score=25.78 Aligned_cols=94 Identities=12% Similarity=-0.052 Sum_probs=56.5
Q ss_pred cCcccchhhhhhhhhhHhhh----hHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhh
Q 044037 52 RRSWGENLTFYTGTAYLAGS----VSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESG 127 (187)
Q Consensus 52 ~r~~~e~l~~~tG~~y~~G~----~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~ 127 (187)
.-+|.+++.--+-.+.+.+. ..+..+-+++-.+.. ....-+--...+...+.+.+..++.+. ..|-.+.|.
T Consensus 24 ~h~w~~~c~ga~~~~ll~~~~~~l~~y~~~ya~~l~~~~-r~~s~~d~~~k~~~~~cqs~lflvtn~----~~f~al~C~ 98 (460)
T KOG1398|consen 24 DHSWVANCIGALCQSLLLSYGVRLGIYILLYAFKLARGQ-RYSSLLDLDLKVREEACQSGLFLVTNT----GSFHALRCC 98 (460)
T ss_pred cCCcccchhHHHHHHHHhhcceehhhHHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhhceeeeech----HHHHHHHHH
Confidence 45687776554444444443 334444444433321 111112223344555666777765544 456778899
Q ss_pred HhhhccCCchhHHHHHHHHHHHH
Q 044037 128 VVAATDRDDVWSSVAAGLGTGAV 150 (187)
Q Consensus 128 i~~~R~k~D~~Nsv~AG~~TGal 150 (187)
+.+.++|.-.||+.++|++.+.-
T Consensus 99 lRkwlgkftp~t~glv~s~las~ 121 (460)
T KOG1398|consen 99 LRKWLGKFTPLTSGLVGSVLASS 121 (460)
T ss_pred HHHHhcccCcccHHHHHHHHhhh
Confidence 99999999999999999887643
No 44
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=24.25 E-value=53 Score=26.81 Aligned_cols=85 Identities=15% Similarity=0.319 Sum_probs=44.9
Q ss_pred CCCCCCCCcccCCCCcccc---cCCCCCCcccchhhhhhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCCh
Q 044037 15 PETRLYNPYAELNLPAQNL---YKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDT 91 (187)
Q Consensus 15 ~~~~~~~Py~~~~~~~~~l---~~~~~~pE~l~~ee~~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~ 91 (187)
|+-..+.||.++ ||..+ -.--+.|-+..|++. ..=+++ |+. ---..+...=+||+.+..+|--.-+-|++
T Consensus 74 p~Gt~Fipfsqf--P~~~~RkDC~Y~~tPAM~~P~~~-~nl~sC-Enw---lpRrVmsAwr~aGivHaLEgW~~HEcG~~ 146 (164)
T PF12076_consen 74 PKGTHFIPFSQF--PPKKVRKDCTYHSTPAMKVPKSM-ENLHSC-ENW---LPRRVMSAWRAAGIVHALEGWNHHECGDD 146 (164)
T ss_pred CCCCEEeeccCC--CcHHHhCCCcccCcccccCChhh-hhhhhh-hcc---chhhHHHHHhhhhhhhhhcCCcccccCcc
Confidence 666789999988 76211 011134444444432 111111 111 12233456677888899998766655532
Q ss_pred hHHHHHHHHHhhcccc
Q 044037 92 LKLKINRVLNSSGHSG 107 (187)
Q Consensus 92 ~k~r~~~~ln~~~k~g 107 (187)
-.++..++.+..+.|
T Consensus 147 -v~~idkvW~AAl~HG 161 (164)
T PF12076_consen 147 -VDRIDKVWEAALKHG 161 (164)
T ss_pred -cccHHHHHHHHHHcC
Confidence 235666666665554
No 45
>PF03116 NQR2_RnfD_RnfE: NQR2, RnfD, RnfE family; InterPro: IPR004338 This family of proteins describes the Nqr2 (NqrB) subunit of the bacterial 6-subunit sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT []. The family also includes RnfD, which is involved in nitrogen fixation. The similarity of RnfD to NADH-ubiquinone oxidoreductases was previously noted [].; GO: 0006810 transport, 0016020 membrane
Probab=23.69 E-value=1.8e+02 Score=25.80 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=33.2
Q ss_pred hhhhhHhhhccCCc----hhHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 044037 123 GMESGVVAATDRDD----VWSSVAAGLGTGAVCRAARGIRSAAVAGAIG 167 (187)
Q Consensus 123 g~e~~i~~~R~k~D----~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G 167 (187)
.+|..+.++|+|+- +..+++-|.+-+.++-....+-..+++++++
T Consensus 54 l~E~l~~~l~~~~~~~~~d~sa~vTglLlal~LP~~~P~w~v~ig~~~a 102 (313)
T PF03116_consen 54 LAEALFAKLRKRPIPTLKDLSAVVTGLLLALLLPPSVPLWVVAIGSFFA 102 (313)
T ss_pred HHHHHHHHHhcCCCCCCCCccHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 57999999998774 4567777777777777777777777666654
No 46
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=22.74 E-value=5.5e+02 Score=23.55 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=62.4
Q ss_pred hhhhhHhhhhHHHHHHHHHHhhcccCCCh---hHHHHHHHHHhhccccccc-----hhhHHHH--HHHHHhhhhhHhhhc
Q 044037 63 TGTAYLAGSVSGAAIGLFSAFKSMEKGDT---LKLKINRVLNSSGHSGRSW-----GNRVGVI--GLIYAGMESGVVAAT 132 (187)
Q Consensus 63 tG~~y~~G~~~G~~~G~~~g~~~~~~g~~---~k~r~~~~ln~~~k~g~~~-----gn~fgvi--g~lysg~e~~i~~~R 132 (187)
+|.-|+.|..---.+|.+.|.....+|.. --.-+.-+|..++|..+.+ |.-+|-+ .++|+.+|+=+..--
T Consensus 74 IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEH 153 (454)
T KOG4332|consen 74 IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEH 153 (454)
T ss_pred cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666554333321 1123567788888877764 5555544 579999998664432
Q ss_pred -cCCc---------------hhH---HHHHHHHHHHHhhhcc-ChHHHHHHHHHHHHHHHHH
Q 044037 133 -DRDD---------------VWS---SVAAGLGTGAVCRAAR-GIRSAAVAGAIGGLAAGAA 174 (187)
Q Consensus 133 -~k~D---------------~~N---sv~AG~~TGal~~~~~-G~ra~~ig~a~G~~la~a~ 174 (187)
.|+| .|| +|+||...-++...-+ ||.+-..+++-..+++.|.
T Consensus 154 nekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAv 215 (454)
T KOG4332|consen 154 NEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAV 215 (454)
T ss_pred hhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 2454 244 4566766554443322 6655555544444444443
No 47
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=22.72 E-value=6.6e+02 Score=23.76 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=9.0
Q ss_pred hhhHhhhhHHHHHH
Q 044037 65 TAYLAGSVSGAAIG 78 (187)
Q Consensus 65 ~~y~~G~~~G~~~G 78 (187)
..++.|+++|+.++
T Consensus 302 ~~~l~g~iiG~~~~ 315 (482)
T PRK11404 302 MKFAAAFLVGAMLA 315 (482)
T ss_pred cHHHHHHHHHHHHH
Confidence 34666777777665
No 48
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=22.55 E-value=25 Score=32.74 Aligned_cols=38 Identities=37% Similarity=0.601 Sum_probs=28.1
Q ss_pred CCcccCCCCcccccCCCCCCcccchhhhhhhcCcccchhhh
Q 044037 21 NPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTF 61 (187)
Q Consensus 21 ~Py~~~~~~~~~l~~~~~~pE~l~~ee~~~~~r~~~e~l~~ 61 (187)
+.|++++.|. .+..+-.|||.+|=+.++.|+|.-|+-+
T Consensus 15 ~sY~~~hkpa---seF~~R~~yL~HeLqIm~pkRw~~nLP~ 52 (492)
T PF11840_consen 15 KSYRELHKPA---SEFETRSEYLEHELQIMSPKRWRLNLPF 52 (492)
T ss_pred hhHHHhhCCh---hhcccHHHHHhhhhhhcCcccccCCCCC
Confidence 4566664333 4777888999999999999999766543
No 49
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=22.51 E-value=5.7e+02 Score=23.00 Aligned_cols=42 Identities=29% Similarity=0.495 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHH-HHHHHhhhhcC
Q 044037 142 AAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAV-AAKQAVKRYVP 186 (187)
Q Consensus 142 ~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~-~~~~~~~r~~~ 186 (187)
..|++.|.+.... .+-.+|+.+.+.+++-.. ..++.+||++|
T Consensus 93 ~pG~i~G~~~~~~---~~GflGgII~gilag~~~~~lek~ikK~lP 135 (346)
T TIGR01427 93 APGMIAGLIANNF---NSGFLGGIIAGFLAGYVVKGLQKYIKKKLP 135 (346)
T ss_pred cHHHHHHHHHHcc---ccchHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3377777665432 123456666666655433 36888899888
No 50
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=22.27 E-value=1.1e+02 Score=27.85 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 044037 161 AVAGAIGGLAAGAAVAAKQAVK 182 (187)
Q Consensus 161 ~ig~a~G~~la~a~~~~~~~~~ 182 (187)
++++++|++++.+++++++++.
T Consensus 343 vl~~llG~~lg~~~vL~r~~~r 364 (377)
T PRK10381 343 ILAALIGGMLACGFVLLRHAMR 364 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444555555443
No 51
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.18 E-value=2.2e+02 Score=24.07 Aligned_cols=147 Identities=22% Similarity=0.143 Sum_probs=78.4
Q ss_pred CCCCCCcccchhhhhhhcCcccchhhhhh-hhh----hHhh--hhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhcccc
Q 044037 35 KLPTNPEFLFSEESIHQRRSWGENLTFYT-GTA----YLAG--SVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSG 107 (187)
Q Consensus 35 ~~~~~pE~l~~ee~~~~~r~~~e~l~~~t-G~~----y~~G--~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g 107 (187)
+.|-+.||++.++. .++--+.|+-.-+. |+. |-.| ...|.++|.+.|+..--.+...+.-.+--+|.+-...
T Consensus 43 d~~~n~d~ly~~~~-~pefl~~~eg~~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN~~ 121 (206)
T KOG3324|consen 43 DKPLNVDYLYLLPD-QPEFLFPEEGAIKRRGWFENLTFGTGWAYLTGSAIGAFNGLILGLKNTENGASGKLRLNRILNSV 121 (206)
T ss_pred ccccccchhhhccC-CccccCchhccccccchhhhhheeccchhccchhhhhHHHHHHhhhcCCCCCccchhHHHHhhhc
Confidence 44454588876654 34555665655533 432 4444 5667888888888754222222333333466666666
Q ss_pred ccchhhHHHHHHHHHhhhhhHhhh-ccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044037 108 RSWGNRVGVIGLIYAGMESGVVAA-TDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKR 183 (187)
Q Consensus 108 ~~~gn~fgvig~lysg~e~~i~~~-R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~~r 183 (187)
.+-|-.+|=--..-..+=.+||.. +.+.|--.. .-+.++|++=.+--=-..-+.+.++++++.+....+=-+-+|
T Consensus 122 t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~-lnsv~AGalTGalyrs~~Glr~~av~ga~g~~aa~aw~l~k~ 197 (206)
T KOG3324|consen 122 TRRGRFWGNTLGSLALMYSAIESGIEATRGKDDD-LNSVAAGALTGALYRSTRGLRAAAVAGAVGGTAAAAWTLGKR 197 (206)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHhhccccc-hhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHhhh
Confidence 666666665555555555555443 444444433 555555555222211223345566666666666555444444
No 52
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=20.64 E-value=1.3e+02 Score=27.37 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=26.7
Q ss_pred ccChHHHH---HHHHHHHHHHHHHHHHHHHhhhhcC
Q 044037 154 ARGIRSAA---VAGAIGGLAAGAAVAAKQAVKRYVP 186 (187)
Q Consensus 154 ~~G~ra~~---ig~a~G~~la~a~~~~~~~~~r~~~ 186 (187)
+.+||.++ +++++|+++++..++++.+++.|-+
T Consensus 311 rd~PrrA~ilil~~LiGgm~g~g~vL~R~~lk~~k~ 346 (347)
T COG3765 311 RDSPRRAIILILGALIGGMLGAGVVLLRNALKKYKQ 346 (347)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45777654 6889999999999999999998753
No 53
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=20.41 E-value=46 Score=26.24 Aligned_cols=36 Identities=19% Similarity=0.077 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHH
Q 044037 140 SVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAV 175 (187)
Q Consensus 140 sv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~ 175 (187)
.|+-|++||.++..+.|+-.=++--.+++++++.++
T Consensus 99 ~I~vaglaGsIlar~r~~~~R~~~P~~~g~~~~~~~ 134 (158)
T PF09769_consen 99 YIGVAGLAGSILARRRGIFKRFLYPLAFGGAAASYC 134 (158)
T ss_pred eeehhhhheeeeeccCcchhhhHHHHHHHHHHhHhc
Confidence 356777899999998886444444455555454443
No 54
>PF02382 RTX: RTX N-terminal domain; InterPro: IPR018504 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. To cause pathogenicity, the HlyA toxin must first bind Ca2+ ions to the set of glycine-rich repeats and then be activated by HlyC []. This has been demonstrated both in vitro and in vivo. A number of the sequences in this family are metallopeptidases belonging to MEROPS peptidase family M10 (clan MA(M)), subfamily M10B: serralysin, epralysin and unassigned peptidases.; GO: 0005509 calcium ion binding, 0009405 pathogenesis, 0005576 extracellular region
Probab=20.33 E-value=2.3e+02 Score=27.90 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh
Q 044037 156 GIRSAAVAGAIGGLAAGAAVAAKQAV 181 (187)
Q Consensus 156 G~ra~~ig~a~G~~la~a~~~~~~~~ 181 (187)
|-.-+++-+++.++|++..++.||.+
T Consensus 389 GAPIallV~~ItG~IsgIL~asKQ~~ 414 (653)
T PF02382_consen 389 GAPIALLVGGITGAISGILEASKQAM 414 (653)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54445555667778899999998875
Done!