Query 044037
Match_columns 187
No_of_seqs 167 out of 606
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jl0_A Adometdc, S-adenosylmet 22.3 12 0.00043 32.4 -1.1 40 41-80 116-160 (334)
2 1mhm_A Adometdc, samdc, S-aden 21.4 11 0.00038 32.1 -1.6 33 41-73 47-88 (288)
3 2keg_A PLNK; protein, peptide, 19.2 48 0.0016 18.6 1.3 17 63-79 6-22 (32)
4 2b2h_A AMT-1, ammonium transpo 16.3 3.3E+02 0.011 23.8 6.8 45 128-172 237-284 (399)
5 3mhp_C TIC62_peptide, ferredox 16.1 1.1E+02 0.0038 16.7 2.2 10 17-26 3-12 (26)
6 2lbg_A Major prion protein; co 11.7 2E+02 0.0068 15.8 2.5 18 66-83 6-23 (27)
7 3b9w_A Ammonium transporter fa 11.5 7.5E+02 0.026 21.6 7.9 53 132-184 231-287 (407)
8 2lck_A Mitochondrial uncouplin 10.2 3.4E+02 0.012 21.6 4.8 34 117-150 178-215 (303)
9 2imj_A Hypothetical protein DU 10.0 48 0.0016 25.8 -0.6 17 124-140 16-32 (166)
10 3p5n_A RIBU, riboflavin uptake 9.5 6E+02 0.021 19.2 7.5 12 69-80 54-65 (189)
No 1
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...
Probab=22.31 E-value=12 Score=32.44 Aligned_cols=40 Identities=20% Similarity=0.417 Sum_probs=29.8
Q ss_pred cccchhhhhhhcCcccchhhh-h----hhhhhHhhhhHHHHHHHH
Q 044037 41 EFLFSEESIHQRRSWGENLTF-Y----TGTAYLAGSVSGAAIGLF 80 (187)
Q Consensus 41 E~l~~ee~~~~~r~~~e~l~~-~----tG~~y~~G~~~G~~~G~~ 80 (187)
.|+||+.+..+.|+|.|+..+ . .|.+|++|-.=+-=|.++
T Consensus 116 nf~fP~~Q~~pH~sf~eEv~~L~~~F~~G~aY~~G~~~~~hw~ly 160 (334)
T 1jl0_A 116 NFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGYCMGRMNSDCWYLY 160 (334)
T ss_dssp CCSSGGGCCTTCSSHHHHHHHHHTTCSSEEEEEESCTTSSCEEEE
T ss_pred CCCCcccCCCccCCHHHHHHHHHHhcCCCcEEEeCCCCCCeeEEE
Confidence 588999988889999999876 1 499999996544333333
No 2
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=21.39 E-value=11 Score=32.11 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=16.1
Q ss_pred cccchhhhhhhcCcccchhhh----h-----hhhhhHhhhhH
Q 044037 41 EFLFSEESIHQRRSWGENLTF----Y-----TGTAYLAGSVS 73 (187)
Q Consensus 41 E~l~~ee~~~~~r~~~e~l~~----~-----tG~~y~~G~~~ 73 (187)
.|+||+.+..+.++|.|+..+ . .|.+|++|-.-
T Consensus 47 nf~fP~~Q~~pH~sf~eEV~~L~~~F~~~~~~G~aY~~G~~~ 88 (288)
T 1mhm_A 47 SFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPD 88 (288)
T ss_dssp C-----------CCHHHHHHHHHHHHTTSTTCEEEEEESSSC
T ss_pred cCCCcccCCCCcCCHHHHHHHHHHHhcccCCCceeEEeCCCC
Confidence 588899887788999999765 2 47888888543
No 3
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=19.23 E-value=48 Score=18.57 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=12.2
Q ss_pred hhhhhHhhhhHHHHHHH
Q 044037 63 TGTAYLAGSVSGAAIGL 79 (187)
Q Consensus 63 tG~~y~~G~~~G~~~G~ 79 (187)
-|.+|.+|..+|++--.
T Consensus 6 ngigyaigyafgavera 22 (32)
T 2keg_A 6 NGIGYAIGYAFGAVERA 22 (32)
T ss_dssp SSSHHHHHHHHHHHHHH
T ss_pred cCcceeehhhhhHHHHH
Confidence 47788888888776543
No 4
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=16.34 E-value=3.3e+02 Score=23.79 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=21.6
Q ss_pred HhhhccCCch---hHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHH
Q 044037 128 VVAATDRDDV---WSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAG 172 (187)
Q Consensus 128 i~~~R~k~D~---~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~ 172 (187)
++++++|-|. .|.++||.++=.-=..--.|-.+++=+++++++.-
T Consensus 237 ~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~ 284 (399)
T 2b2h_A 237 IGWIKGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCY 284 (399)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHH
Confidence 3455567775 56666666531110001135555555555555443
No 5
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=16.06 E-value=1.1e+02 Score=16.67 Aligned_cols=10 Identities=20% Similarity=0.534 Sum_probs=6.9
Q ss_pred CCCCCCcccC
Q 044037 17 TRLYNPYAEL 26 (187)
Q Consensus 17 ~~~~~Py~~~ 26 (187)
.|+++||...
T Consensus 3 ~rPlSpy~~Y 12 (26)
T 3mhp_C 3 EQPLSPYTAY 12 (26)
T ss_dssp CCCSSTTTTB
T ss_pred ccccCccccc
Confidence 4677888754
No 6
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=11.73 E-value=2e+02 Score=15.76 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=11.0
Q ss_pred hhHhhhhHHHHHHHHHHh
Q 044037 66 AYLAGSVSGAAIGLFSAF 83 (187)
Q Consensus 66 ~y~~G~~~G~~~G~~~g~ 83 (187)
++..|+++|++-|.+-|.
T Consensus 6 a~AAGaVvGglGgy~lg~ 23 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHH
Confidence 455666777666665553
No 7
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=11.46 E-value=7.5e+02 Score=21.59 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=22.1
Q ss_pred ccCCch---hHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Q 044037 132 TDRDDV---WSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAG-AAVAAKQAVKRY 184 (187)
Q Consensus 132 R~k~D~---~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~-a~~~~~~~~~r~ 184 (187)
++|-|. .|.++||.++=.-=..--.|-.+++=+++++++.- +...++..+++.
T Consensus 231 ~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~ 287 (407)
T 3b9w_A 231 KGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESK 287 (407)
T ss_dssp TTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456664 45666655431110000134444444444444332 333444445443
No 8
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=10.25 E-value=3.4e+02 Score=21.62 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhHhhhcc----CCchhHHHHHHHHHHHH
Q 044037 117 IGLIYAGMESGVVAATD----RDDVWSSVAAGLGTGAV 150 (187)
Q Consensus 117 ig~lysg~e~~i~~~R~----k~D~~Nsv~AG~~TGal 150 (187)
.+..|...|..-+.+.. .++.+..+++|+++|++
T Consensus 178 ~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~ 215 (303)
T 2lck_A 178 NCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFC 215 (303)
T ss_dssp HHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 34556666666555543 23355667888877765
No 9
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=10.04 E-value=48 Score=25.84 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.7
Q ss_pred hhhhHhhhccCCchhHH
Q 044037 124 MESGVVAATDRDDVWSS 140 (187)
Q Consensus 124 ~e~~i~~~R~k~D~~Ns 140 (187)
.|+++.++|..+|.||+
T Consensus 16 ~EtA~~KVr~AEDaWNs 32 (166)
T 2imj_A 16 RESAIEKIRLAEDGWNS 32 (166)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 47889999999999996
No 10
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=9.51 E-value=6e+02 Score=19.18 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=4.5
Q ss_pred hhhhHHHHHHHH
Q 044037 69 AGSVSGAAIGLF 80 (187)
Q Consensus 69 ~G~~~G~~~G~~ 80 (187)
.+..+|-.+|+.
T Consensus 54 ~~~~~Gp~~g~~ 65 (189)
T 3p5n_A 54 ATFTFGPVAGII 65 (189)
T ss_dssp HHTTSCHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 333333333333
Done!