Query 044043
Match_columns 428
No_of_seqs 242 out of 828
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 19:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jjm_A Glycosyl transferase, g 82.6 7.9 0.00027 37.3 10.9 89 248-340 296-384 (394)
2 3okp_A GDP-mannose-dependent a 80.0 8.3 0.00028 36.7 9.9 93 248-348 291-383 (394)
3 3c48_A Predicted glycosyltrans 77.0 18 0.0006 35.2 11.4 88 248-340 337-424 (438)
4 2gek_A Phosphatidylinositol ma 74.2 9.1 0.00031 36.7 8.4 104 238-349 283-388 (406)
5 3oy2_A Glycosyltransferase B73 72.3 12 0.0004 36.3 8.7 92 248-349 285-395 (413)
6 2x6q_A Trehalose-synthase TRET 71.6 18 0.00063 35.0 9.9 85 248-338 327-411 (416)
7 3qhp_A Type 1 capsular polysac 71.4 13 0.00045 30.9 7.8 73 249-329 87-162 (166)
8 2bfw_A GLGA glycogen synthase; 68.6 17 0.00058 31.1 8.1 70 249-323 128-198 (200)
9 2r60_A Glycosyl transferase, g 63.7 34 0.0012 34.1 10.3 88 249-341 371-459 (499)
10 2iw1_A Lipopolysaccharide core 63.2 11 0.00037 35.7 6.2 88 248-341 282-371 (374)
11 3fro_A GLGA glycogen synthase; 42.2 62 0.0021 30.9 7.8 89 249-346 343-432 (439)
12 3s28_A Sucrose synthase 1; gly 39.6 1E+02 0.0035 33.8 9.7 90 249-342 677-770 (816)
No 1
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=82.61 E-value=7.9 Score=37.31 Aligned_cols=89 Identities=6% Similarity=-0.004 Sum_probs=62.2
Q ss_pred ccchhhHHHHhcCCeeeeecCcchhhhhcccCCCceEEEecCCCCcccHHHHHHhhhccHHHHHHHHHHHHHHHHHHhCh
Q 044043 248 AWSVSEKYILACDSMTLLIEPKYYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGNTHTRQARAIGRAGSRYMQEKLKM 327 (428)
Q Consensus 248 ~~S~rlk~lL~~~Svvl~~~s~~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~~h~~~A~~IA~~g~~fa~~~L~~ 327 (428)
+++..+--.|+||-.|+..+.. -..+.+..+..=+-+..++ .++|.++|..+.++++..++++++|++++.+..+.
T Consensus 296 ~~~~~~~EAma~G~PvI~~~~~---~~~e~v~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 371 (394)
T 2jjm_A 296 SFGLVLLEAMACGVPCIGTRVG---GIPEVIQHGDTGYLCEVGD-TTGVADQAIQLLKDEELHRNMGERARESVYEQFRS 371 (394)
T ss_dssp SCCHHHHHHHHTTCCEEEECCT---TSTTTCCBTTTEEEECTTC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCchHHHHHHhcCCCEEEecCC---ChHHHhhcCCceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCH
Confidence 4555666789999988876542 2222333333333344322 57899999999999999999999999999889998
Q ss_pred hhHHHHHHHHHHH
Q 044043 328 KYVYDYMFHLLIE 340 (428)
Q Consensus 328 ~~~~~Y~~~LL~e 340 (428)
+.+..-+..++.+
T Consensus 372 ~~~~~~~~~~~~~ 384 (394)
T 2jjm_A 372 EKIVSQYETIYYD 384 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8776655555543
No 2
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=79.97 E-value=8.3 Score=36.74 Aligned_cols=93 Identities=9% Similarity=-0.025 Sum_probs=62.6
Q ss_pred ccchhhHHHHhcCCeeeeecCcchhhhhcccCCCceEEEecCCCCcccHHHHHHhhhccHHHHHHHHHHHHHHHHHHhCh
Q 044043 248 AWSVSEKYILACDSMTLLIEPKYYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGNTHTRQARAIGRAGSRYMQEKLKM 327 (428)
Q Consensus 248 ~~S~rlk~lL~~~Svvl~~~s~~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~~h~~~A~~IA~~g~~fa~~~L~~ 327 (428)
+++..+--.|+||-.|+..+.. -..+.+... .=+-+..++ .++|.++|..+.++++..++++++|++++++.++.
T Consensus 291 ~~~~~~~Ea~a~G~PvI~~~~~---~~~e~i~~~-~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 365 (394)
T 3okp_A 291 GLGIVYLEAQACGVPVIAGTSG---GAPETVTPA-TGLVVEGSD-VDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSW 365 (394)
T ss_dssp SSCHHHHHHHHTTCCEEECSST---TGGGGCCTT-TEEECCTTC-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBH
T ss_pred ccCcHHHHHHHcCCCEEEeCCC---ChHHHHhcC-CceEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCH
Confidence 3445555678899988876532 223334444 223344322 68999999999999999999999999999998988
Q ss_pred hhHHHHHHHHHHHHHhhccCC
Q 044043 328 KYVYDYMFHLLIEYAKLLKFE 348 (428)
Q Consensus 328 ~~~~~Y~~~LL~eYa~L~~~~ 348 (428)
+.+..-+.. -|.++.+-+
T Consensus 366 ~~~~~~~~~---~~~~~~r~~ 383 (394)
T 3okp_A 366 EIMGERLTN---ILQSEPRKL 383 (394)
T ss_dssp HHHHHHHHH---HHHSCCC--
T ss_pred HHHHHHHHH---HHHHhccCc
Confidence 876554444 445555544
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=76.96 E-value=18 Score=35.25 Aligned_cols=88 Identities=6% Similarity=-0.102 Sum_probs=58.9
Q ss_pred ccchhhHHHHhcCCeeeeecCcchhhhhcccCCCceEEEecCCCCcccHHHHHHhhhccHHHHHHHHHHHHHHHHHHhCh
Q 044043 248 AWSVSEKYILACDSMTLLIEPKYYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGNTHTRQARAIGRAGSRYMQEKLKM 327 (428)
Q Consensus 248 ~~S~rlk~lL~~~Svvl~~~s~~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~~h~~~A~~IA~~g~~fa~~~L~~ 327 (428)
+++..+--.|+||-.|+..+.. -..+.+....+=+-+..++ .++|.++|..+.++++..++++++|++++.+ .+.
T Consensus 337 ~~~~~~~Eama~G~PvI~~~~~---~~~e~i~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~ 411 (438)
T 3c48_A 337 SFGLVAMEAQASGTPVIAARVG---GLPIAVAEGETGLLVDGHS-PHAWADALATLLDDDETRIRMGEDAVEHART-FSW 411 (438)
T ss_dssp SSCHHHHHHHHTTCCEEEESCT---THHHHSCBTTTEEEESSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCchHHHHHHHcCCCEEecCCC---ChhHHhhCCCcEEECCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCH
Confidence 3455566778899988876532 2223344444433344322 5789999999999999999999999999988 776
Q ss_pred hhHHHHHHHHHHH
Q 044043 328 KYVYDYMFHLLIE 340 (428)
Q Consensus 328 ~~~~~Y~~~LL~e 340 (428)
+.+..-+..++.+
T Consensus 412 ~~~~~~~~~~~~~ 424 (438)
T 3c48_A 412 AATAAQLSSLYND 424 (438)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6655544444433
No 4
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=74.22 E-value=9.1 Score=36.68 Aligned_cols=104 Identities=9% Similarity=0.001 Sum_probs=68.2
Q ss_pred ceEEEee--cCcccchhhHHHHhcCCeeeeecCcchhhhhcccCCCceEEEecCCCCcccHHHHHHhhhccHHHHHHHHH
Q 044043 238 HRYKIYV--EGQAWSVSEKYILACDSMTLLIEPKYYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGNTHTRQARAIGR 315 (428)
Q Consensus 238 yKYli~i--dG~~~S~rlk~lL~~~Svvl~~~s~~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~~h~~~A~~IA~ 315 (428)
....|.. .+-+++..+--.|+||-.|+..+.. -+.+.+..+.+-+-+..++ .+++.++|..+.++++..+++++
T Consensus 283 adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~---~~~e~i~~~~~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~ 358 (406)
T 2gek_A 283 ADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLD---AFRRVLADGDAGRLVPVDD-ADGMAAALIGILEDDQLRAGYVA 358 (406)
T ss_dssp SSEEEECCCSCCSSCHHHHHHHHHTCEEEECCCH---HHHHHHTTTTSSEECCTTC-HHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchHHHHHHHcCCCEEEecCC---cHHHHhcCCCceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHH
Confidence 3444433 2445666677789999988877542 2223333333333343322 58899999999999999999999
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHhhccCCC
Q 044043 316 AGSRYMQEKLKMKYVYDYMFHLLIEYAKLLKFEP 349 (428)
Q Consensus 316 ~g~~fa~~~L~~~~~~~Y~~~LL~eYa~L~~~~P 349 (428)
+|+++++ ..+.+.+..-+..+ |.+++.-++
T Consensus 359 ~~~~~~~-~~s~~~~~~~~~~~---~~~~~~~~~ 388 (406)
T 2gek_A 359 RASERVH-RYDWSVVSAQIMRV---YETVSGAGI 388 (406)
T ss_dssp HHHHHGG-GGBHHHHHHHHHHH---HHHHCCTTC
T ss_pred HHHHHHH-hCCHHHHHHHHHHH---HHHHHhhcc
Confidence 9999998 77877765544444 445565543
No 5
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=72.33 E-value=12 Score=36.28 Aligned_cols=92 Identities=8% Similarity=-0.017 Sum_probs=60.8
Q ss_pred ccchhhHHHHhcCCeeeeecCcchhhhhcccCCCce-------------------EEEecCCCCcccHHHHHHhhhccHH
Q 044043 248 AWSVSEKYILACDSMTLLIEPKYYDFYSRSLVPLQH-------------------YWPVRTARKCRDIKFAVEWGNTHTR 308 (428)
Q Consensus 248 ~~S~rlk~lL~~~Svvl~~~s~~~e~f~~~L~P~~H-------------------YVPv~~~~~~~dL~~~v~w~~~h~~ 308 (428)
+++..+---|+||-.|+..+.. -..+.+....+ .++.. + .++|.++| .+.++++
T Consensus 285 ~~~~~~lEAma~G~PvI~s~~~---g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~-d--~~~la~~i-~l~~~~~ 357 (413)
T 3oy2_A 285 GFGLCSAEGAVLGKPLIISAVG---GADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGII-D--VDDLVEAF-TFFKDEK 357 (413)
T ss_dssp SSCHHHHHHHTTTCCEEEECCH---HHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEEC-C--HHHHHHHH-HHTTSHH
T ss_pred CCCcHHHHHHHcCCCEEEcCCC---ChHHHHccCcccccccccccccccccCcceeeCCC-C--HHHHHHHH-HHhcCHH
Confidence 4444555678888888776532 22223334343 44433 2 57999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhhccCCC
Q 044043 309 QARAIGRAGSRYMQEKLKMKYVYDYMFHLLIEYAKLLKFEP 349 (428)
Q Consensus 309 ~A~~IA~~g~~fa~~~L~~~~~~~Y~~~LL~eYa~L~~~~P 349 (428)
..++++++|++++.+..+.+.+..- ++.-|.+++.-++
T Consensus 358 ~~~~~~~~a~~~~~~~fs~~~~~~~---~~~~~~~~~~~~~ 395 (413)
T 3oy2_A 358 NRKEYGKRVQDFVKTKPTWDDISSD---IIDFFNSLLRVES 395 (413)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHH---HHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHHhhcC
Confidence 9999999999999888887776554 4445556665543
No 6
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=71.64 E-value=18 Score=34.96 Aligned_cols=85 Identities=8% Similarity=0.051 Sum_probs=59.4
Q ss_pred ccchhhHHHHhcCCeeeeecCcchhhhhcccCCCceEEEecCCCCcccHHHHHHhhhccHHHHHHHHHHHHHHHHHHhCh
Q 044043 248 AWSVSEKYILACDSMTLLIEPKYYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGNTHTRQARAIGRAGSRYMQEKLKM 327 (428)
Q Consensus 248 ~~S~rlk~lL~~~Svvl~~~s~~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~~h~~~A~~IA~~g~~fa~~~L~~ 327 (428)
+++..+--.|+||-.|+..+.. -..+.+.....=+-+. + .++|.++|..+.++++..++++++|++++++.++.
T Consensus 327 ~~~~~~lEAma~G~PvI~~~~~---g~~e~i~~~~~g~l~~-d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 400 (416)
T 2x6q_A 327 GFGLTVTEAMWKGKPVIGRAVG---GIKFQIVDGETGFLVR-D--ANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFII 400 (416)
T ss_dssp SSCHHHHHHHHTTCCEEEESCH---HHHHHCCBTTTEEEES-S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBH
T ss_pred CCccHHHHHHHcCCCEEEccCC---CChhheecCCCeEEEC-C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCH
Confidence 4555566779999988887542 1222333333322233 4 57899999999999999999999999999988888
Q ss_pred hhHHHHHHHHH
Q 044043 328 KYVYDYMFHLL 338 (428)
Q Consensus 328 ~~~~~Y~~~LL 338 (428)
+.+..-+..++
T Consensus 401 ~~~~~~~~~~~ 411 (416)
T 2x6q_A 401 TKHMERYLDIL 411 (416)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77655444444
No 7
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=71.44 E-value=13 Score=30.89 Aligned_cols=73 Identities=4% Similarity=0.067 Sum_probs=48.3
Q ss_pred cchhhHHHHhcCC-eeee-ecC-cchhhhhcccCCCceEEEecCCCCcccHHHHHHhhhccHHHHHHHHHHHHHHHHHHh
Q 044043 249 WSVSEKYILACDS-MTLL-IEP-KYYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGNTHTRQARAIGRAGSRYMQEKL 325 (428)
Q Consensus 249 ~S~rlk~lL~~~S-vvl~-~~s-~~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~~h~~~A~~IA~~g~~fa~~~L 325 (428)
++..+---|+||- .|+. ... ...+. +.....+++... .+++.++|..+.++++..+++++++++++ +..
T Consensus 87 ~~~~~~Eama~G~vPvi~~~~~~~~~~~----~~~~~~~~~~~~---~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~ 158 (166)
T 3qhp_A 87 EAIACLEAISVGIVPVIANSPLSATRQF----ALDERSLFEPNN---AKDLSAKIDWWLENKLERERMQNEYAKSA-LNY 158 (166)
T ss_dssp CCHHHHHHHHTTCCEEEECCTTCGGGGG----CSSGGGEECTTC---HHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHH
T ss_pred ccHHHHHHHhcCCCcEEeeCCCCchhhh----ccCCceEEcCCC---HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHC
Confidence 4445556789998 7776 211 23333 333444554432 58999999999999999999999999998 556
Q ss_pred Chhh
Q 044043 326 KMKY 329 (428)
Q Consensus 326 ~~~~ 329 (428)
+.+.
T Consensus 159 s~~~ 162 (166)
T 3qhp_A 159 TLEN 162 (166)
T ss_dssp C---
T ss_pred Chhh
Confidence 5543
No 8
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=68.59 E-value=17 Score=31.15 Aligned_cols=70 Identities=3% Similarity=-0.063 Sum_probs=48.5
Q ss_pred cchhhHHHHhcCCeeeeecCcchhhhhcccCCCceEEEecCCCCcccHHHHHHhhhc-cHHHHHHHHHHHHHHHHH
Q 044043 249 WSVSEKYILACDSMTLLIEPKYYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGNT-HTRQARAIGRAGSRYMQE 323 (428)
Q Consensus 249 ~S~rlk~lL~~~Svvl~~~s~~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~~-h~~~A~~IA~~g~~fa~~ 323 (428)
++..+--.|+||-.|+..+... +.+.+ ...+-+-+..++ .+++.++|..+.+ +++..++++++|++++++
T Consensus 128 ~~~~~~Ea~a~G~PvI~~~~~~---~~e~~-~~~~g~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 128 FGLVALEAMCLGAIPIASAVGG---LRDII-TNETGILVKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp SCHHHHHHHHTTCEEEEESCHH---HHHHC-CTTTCEEECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCCCCEEEeCCCC---hHHHc-CCCceEEecCCC-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 3445566788999888775432 22222 333333344322 5789999999999 999999999999999876
No 9
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=63.73 E-value=34 Score=34.13 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=59.8
Q ss_pred cchhhHHHHhcCCeeeeecCc-chhhhhcccCCCceEEEecCCCCcccHHHHHHhhhccHHHHHHHHHHHHHHHHHHhCh
Q 044043 249 WSVSEKYILACDSMTLLIEPK-YYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGNTHTRQARAIGRAGSRYMQEKLKM 327 (428)
Q Consensus 249 ~S~rlk~lL~~~Svvl~~~s~-~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~~h~~~A~~IA~~g~~fa~~~L~~ 327 (428)
++..+---|+||-.|+..+.. ..|. +....+=+-+..++ .++|.++|..+.++++..++++++|++++.+..+.
T Consensus 371 ~~~~~lEAma~G~PvI~s~~~g~~e~----v~~~~~g~l~~~~d-~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 445 (499)
T 2r60_A 371 FGLAPVEAMASGLPAVVTRNGGPAEI----LDGGKYGVLVDPED-PEDIARGLLKAFESEETWSAYQEKGKQRVEERYTW 445 (499)
T ss_dssp CCSHHHHHHHTTCCEEEESSBHHHHH----TGGGTSSEEECTTC-HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBH
T ss_pred CCcHHHHHHHcCCCEEEecCCCHHHH----hcCCceEEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCH
Confidence 444556678899988877542 2333 33332222233222 57899999999999999999999999999998988
Q ss_pred hhHHHHHHHHHHHH
Q 044043 328 KYVYDYMFHLLIEY 341 (428)
Q Consensus 328 ~~~~~Y~~~LL~eY 341 (428)
+.+..-+..++.+.
T Consensus 446 ~~~~~~~~~~y~~~ 459 (499)
T 2r60_A 446 QETARGYLEVIQEI 459 (499)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 87665555544433
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=63.19 E-value=11 Score=35.65 Aligned_cols=88 Identities=7% Similarity=-0.016 Sum_probs=58.4
Q ss_pred ccchhhHHHHhcCCeeeeecC-cchhhhhcccCCCceEEEec-CCCCcccHHHHHHhhhccHHHHHHHHHHHHHHHHHHh
Q 044043 248 AWSVSEKYILACDSMTLLIEP-KYYDFYSRSLVPLQHYWPVR-TARKCRDIKFAVEWGNTHTRQARAIGRAGSRYMQEKL 325 (428)
Q Consensus 248 ~~S~rlk~lL~~~Svvl~~~s-~~~e~f~~~L~P~~HYVPv~-~~~~~~dL~~~v~w~~~h~~~A~~IA~~g~~fa~~~L 325 (428)
+++..+--.|+||-.|+..+. ...|...+ ...=+-+. .+ ..+++.++|..+.++++..++++++|++++.++
T Consensus 282 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~----~~~g~~~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~- 355 (374)
T 2iw1_A 282 AAGIVLLEAITAGLPVLTTAVCGYAHYIAD----ANCGTVIAEPF-SQEQLNEVLRKALTQSPLRMAWAENARHYADTQ- 355 (374)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHHHHH----HTCEEEECSSC-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS-
T ss_pred CcccHHHHHHHCCCCEEEecCCCchhhhcc----CCceEEeCCCC-CHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh-
Confidence 445556677899998887654 23333322 12222232 21 157899999999999999999999999999866
Q ss_pred ChhhHHHHHHHHHHHH
Q 044043 326 KMKYVYDYMFHLLIEY 341 (428)
Q Consensus 326 ~~~~~~~Y~~~LL~eY 341 (428)
+...+..-+..+|.+|
T Consensus 356 ~~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 356 DLYSLPEKAADIITGG 371 (374)
T ss_dssp CCSCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHh
Confidence 5555555566665543
No 11
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=42.15 E-value=62 Score=30.92 Aligned_cols=89 Identities=3% Similarity=-0.021 Sum_probs=58.1
Q ss_pred cchhhHHHHhcCCeeeeecCcchhhhhcccCCCceEEEecCCCCcccHHHHHHhhhc-cHHHHHHHHHHHHHHHHHHhCh
Q 044043 249 WSVSEKYILACDSMTLLIEPKYYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGNT-HTRQARAIGRAGSRYMQEKLKM 327 (428)
Q Consensus 249 ~S~rlk~lL~~~Svvl~~~s~~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~~-h~~~A~~IA~~g~~fa~~~L~~ 327 (428)
++..+---|+||-.|+..+.. -..+.+....-+ -+..++ .+++.++|..+.+ +++..++++++|++++ +..+.
T Consensus 343 ~~~~~~EAma~G~Pvi~s~~~---~~~e~~~~~~g~-~~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~ 416 (439)
T 3fro_A 343 FGLVALEAMCLGAIPIASAVG---GLRDIITNETGI-LVKAGD-PGELANAILKALELSRSDLSKFRENCKKRA-MSFSW 416 (439)
T ss_dssp SCHHHHHHHHTTCEEEEESST---HHHHHCCTTTCE-EECTTC-HHHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCH
T ss_pred ccHHHHHHHHCCCCeEEcCCC---CcceeEEcCceE-EeCCCC-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcH
Confidence 444455668999988876543 222233334222 244322 5889999998887 8999999999999999 66887
Q ss_pred hhHHHHHHHHHHHHHhhcc
Q 044043 328 KYVYDYMFHLLIEYAKLLK 346 (428)
Q Consensus 328 ~~~~~Y~~~LL~eYa~L~~ 346 (428)
+.+.. +++.-|.++++
T Consensus 417 ~~~~~---~~~~~~~~~~~ 432 (439)
T 3fro_A 417 EKSAE---RYVKAYTGSID 432 (439)
T ss_dssp HHHHH---HHHHHHHTCSC
T ss_pred HHHHH---HHHHHHHHHHH
Confidence 76544 44445555543
No 12
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=39.64 E-value=1e+02 Score=33.82 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=60.0
Q ss_pred cchhhHHHHhcCCeeeeecCcchhhhhcccCCCceEEEecCCCCcccHHHHHHhhh----ccHHHHHHHHHHHHHHHHHH
Q 044043 249 WSVSEKYILACDSMTLLIEPKYYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGN----THTRQARAIGRAGSRYMQEK 324 (428)
Q Consensus 249 ~S~rlk~lL~~~Svvl~~~s~~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~----~h~~~A~~IA~~g~~fa~~~ 324 (428)
++.-+---|+||-.|+..+..- ..+.+....+=+-+...+ .+++.++|..+. .+++..++++++|++++.+.
T Consensus 677 fglvllEAMA~G~PVIasd~GG---~~EiV~dg~~Gllv~p~D-~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~ 752 (816)
T 3s28_A 677 FGLTVVEAMTCGLPTFATCKGG---PAEIIVHGKSGFHIDPYH-GDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEK 752 (816)
T ss_dssp SCHHHHHHHHTTCCEEEESSBT---HHHHCCBTTTBEEECTTS-HHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHcCCCEEEeCCCC---hHHHHccCCcEEEeCCCC-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 4444556689999888765322 122233344333344422 578888885544 89999999999999999999
Q ss_pred hChhhHHHHHHHHHHHHH
Q 044043 325 LKMKYVYDYMFHLLIEYA 342 (428)
Q Consensus 325 L~~~~~~~Y~~~LL~eYa 342 (428)
.+.+.+..=+..+...|.
T Consensus 753 fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 753 YTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 988877666666665554
Done!