Query 044043
Match_columns 428
No_of_seqs 242 out of 828
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 19:01:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044043.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044043hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bisa1 c.87.1.8 (A:1-437) Gly 46.9 19 0.0014 32.2 7.3 89 248-345 340-429 (437)
2 d2iw1a1 c.87.1.8 (A:2-371) Lip 45.6 21 0.0015 30.7 7.1 72 248-324 281-354 (370)
3 d2bfwa1 c.87.1.8 (A:218-413) G 42.0 32 0.0023 27.6 7.4 71 248-323 123-194 (196)
4 d1veha_ d.52.8.1 (A:) HIRA-int 23.7 58 0.0042 23.9 5.2 49 61-112 39-89 (92)
5 d2f9fa1 c.87.1.8 (A:2-167) Fir 16.8 73 0.0053 24.6 4.8 65 248-319 98-165 (166)
6 d2dt7b1 a.217.1.1 (B:134-217) 13.4 59 0.0043 23.3 2.9 34 310-343 38-84 (84)
7 d1poia_ c.124.1.2 (A:) Glutaco 12.2 66 0.0048 28.8 3.4 33 373-405 231-265 (317)
8 d1s16a1 d.14.1.3 (A:1217-1383) 11.3 1.1E+02 0.0078 24.7 4.2 25 301-325 140-164 (167)
9 d2nxoa1 c.94.1.1 (A:5-281) Hyp 11.2 48 0.0035 28.1 2.1 23 294-316 203-225 (277)
10 d1kija1 d.14.1.3 (A:221-392) D 10.1 1.2E+02 0.0084 24.6 4.0 25 301-325 139-163 (172)
No 1
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=46.90 E-value=19 Score=32.25 Aligned_cols=89 Identities=3% Similarity=-0.036 Sum_probs=56.5
Q ss_pred ccchhhHHHHhcCCeeeeecCcchhhhhcccCCCceEEEecCCCCcccHHHHHHhhh-ccHHHHHHHHHHHHHHHHHHhC
Q 044043 248 AWSVSEKYILACDSMTLLIEPKYYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGN-THTRQARAIGRAGSRYMQEKLK 326 (428)
Q Consensus 248 ~~S~rlk~lL~~~Svvl~~~s~~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~-~h~~~A~~IA~~g~~fa~~~L~ 326 (428)
+++..+.--|+||-.|+..+..-. .+.+.....|+ +...+ -++|.++|..+. .+++..++++++|++.++ .++
T Consensus 340 ~~~~~~~Eama~G~Pvi~~~~g~~---~e~i~~~~G~~-~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-~~s 413 (437)
T d2bisa1 340 PFGLVALEAMCLGAIPIASAVGGL---RDIITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAM-SFS 413 (437)
T ss_dssp SSCHHHHHHHTTTCEEEEESCTTH---HHHCCTTTCEE-ECTTC-HHHHHHHHHHHHTTTTSCTHHHHHHHHHHHH-HSC
T ss_pred ccchHHHHHHHCCCCEEEeCCCCc---HHhEECCcEEE-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hCC
Confidence 344455566899998887654322 11122223443 33322 578999997765 577889999999999985 478
Q ss_pred hhhHHHHHHHHHHHHHhhc
Q 044043 327 MKYVYDYMFHLLIEYAKLL 345 (428)
Q Consensus 327 ~~~~~~Y~~~LL~eYa~L~ 345 (428)
.+.+. .+++.-|.+++
T Consensus 414 ~~~~a---~~~~~iY~~~i 429 (437)
T d2bisa1 414 WEKSA---ERYVKAYTGSI 429 (437)
T ss_dssp HHHHH---HHHHHHHHTCS
T ss_pred HHHHH---HHHHHHHHHHH
Confidence 77664 35555576665
No 2
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=45.58 E-value=21 Score=30.69 Aligned_cols=72 Identities=8% Similarity=-0.001 Sum_probs=49.0
Q ss_pred ccchhhHHHHhcCCeeeeecCc-chhhhhcccCCCce-EEEecCCCCcccHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Q 044043 248 AWSVSEKYILACDSMTLLIEPK-YYDFYSRSLVPLQH-YWPVRTARKCRDIKFAVEWGNTHTRQARAIGRAGSRYMQEK 324 (428)
Q Consensus 248 ~~S~rlk~lL~~~Svvl~~~s~-~~e~f~~~L~P~~H-YVPv~~~~~~~dL~~~v~w~~~h~~~A~~IA~~g~~fa~~~ 324 (428)
+++..+---|+||-.|+..+.. ..|. +....+ ++-++..+ -++|.++|..+.++++..++++++|+++++++
T Consensus 281 ~~~~~~~EAma~G~PvI~s~~~g~~e~----i~~~~~G~l~~~~~d-~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~ 354 (370)
T d2iw1a1 281 AAGIVLLEAITAGLPVLTTAVCGYAHY----IADANCGTVIAEPFS-QEQLNEVLRKALTQSPLRMAWAENARHYADTQ 354 (370)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHH----HHHHTCEEEECSSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred cccceeeecccCCeeEEEeCCCChHHH----hcCCCceEEEcCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 4555566778999888765432 3333 223333 22223221 57899999999999999999999999999664
No 3
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=42.00 E-value=32 Score=27.59 Aligned_cols=71 Identities=3% Similarity=-0.052 Sum_probs=47.8
Q ss_pred ccchhhHHHHhcCCeeeeecCcchhhhhcccCCCceEEEecCCCCcccHHHHHHhhh-ccHHHHHHHHHHHHHHHHH
Q 044043 248 AWSVSEKYILACDSMTLLIEPKYYDFYSRSLVPLQHYWPVRTARKCRDIKFAVEWGN-THTRQARAIGRAGSRYMQE 323 (428)
Q Consensus 248 ~~S~rlk~lL~~~Svvl~~~s~~~e~f~~~L~P~~HYVPv~~~~~~~dL~~~v~w~~-~h~~~A~~IA~~g~~fa~~ 323 (428)
+++..+.-.|+||-+|+....... .+.+.....|+ +..++ ..++.++|..+. ...+..++|+++|++.+.+
T Consensus 123 ~~~~~~~Eam~~G~pvI~~~~~~~---~e~i~~~~g~~-~~~~~-~~~l~~~i~~~l~~~~~~~~~~~~~a~~~a~~ 194 (196)
T d2bfwa1 123 PFGLVALEAMCLGAIPIASAVGGL---RDIITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS 194 (196)
T ss_dssp SSCHHHHHHHHTTCEEEEESCHHH---HHHCCTTTCEE-ECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcCceeeecCCCcc---ceeecCCceee-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 456677788999999998764322 22222233343 44432 578888887654 4678899999999998865
No 4
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.71 E-value=58 Score=23.85 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=33.6
Q ss_pred EEEEECCEEEEecccccccc-chhhHH-HHHHHHHHhcCCCCCCeEEEEecCCc
Q 044043 61 RLVIINGDAYVEKYKNAYQT-RDVFTV-WGILQLLRLYPGKVPDLELMFSCGDR 112 (428)
Q Consensus 61 rv~I~~G~lyv~~~~~~~~s-R~~~t~-~~l~~ll~~~~~~LPDvef~~n~~D~ 112 (428)
-+-|.||.|||.-.+.+-.- -...|+ .+|.++|+. .+|++.-+.+..|.
T Consensus 39 lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~---~vpev~~V~~v~~~ 89 (92)
T d1veha_ 39 YRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF---YIPEVEGVEQVSGP 89 (92)
T ss_dssp EEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHH---HCSSCCCEEECSCS
T ss_pred EEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHH---HCCCcceEEEcCCC
Confidence 47789999999876543211 112344 678888887 47998888888774
No 5
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=16.76 E-value=73 Score=24.55 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=40.5
Q ss_pred ccchhhHHHHhcCCeeeeecCcc-hhhhhcccCCCce-EEEecCCCCcccHHHHHHhhhccHHH-HHHHHHHHHH
Q 044043 248 AWSVSEKYILACDSMTLLIEPKY-YDFYSRSLVPLQH-YWPVRTARKCRDIKFAVEWGNTHTRQ-ARAIGRAGSR 319 (428)
Q Consensus 248 ~~S~rlk~lL~~~Svvl~~~s~~-~e~f~~~L~P~~H-YVPv~~~~~~~dL~~~v~w~~~h~~~-A~~IA~~g~~ 319 (428)
+++..+---|+||-.|+..+... .|+ +..... |+ +..+ .+++.+++..+.+++++ .+.+.++|++
T Consensus 98 ~~~~~~~Ea~~~g~pvi~s~~~~~~e~----i~~~~~g~~-~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~a~~ 165 (166)
T d2f9fa1 98 DFGLTPIEAMASGKPVIAVNEGGFKET----VINEKTGYL-VNAD--VNEIIDAMKKVSKNPDKFKKDCFRRAKE 165 (166)
T ss_dssp CSCHHHHHHHHTTCCEEEESSHHHHHH----CCBTTTEEE-ECSC--HHHHHHHHHHHHHCTTTTHHHHHHHHHT
T ss_pred cccccccccccccccceeecCCcceee----ecCCccccc-CCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHhC
Confidence 45555667789999888876543 333 333333 32 3334 57899999999888653 3445555554
No 6
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.38 E-value=59 Score=23.29 Aligned_cols=34 Identities=24% Similarity=0.608 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHH------------HHhChh-hHHHHHHHHHHHHHh
Q 044043 310 ARAIGRAGSRYMQ------------EKLKMK-YVYDYMFHLLIEYAK 343 (428)
Q Consensus 310 A~~IA~~g~~fa~------------~~L~~~-~~~~Y~~~LL~eYa~ 343 (428)
|+=+|++|.+|-. .+|++. ...-|+.++|.+|++
T Consensus 38 A~fVa~~G~~fe~~l~~~~~~Np~F~FL~~~~~~~~yY~~lv~~Y~~ 84 (84)
T d2dt7b1 38 AQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 84 (84)
T ss_dssp HHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHhcCHHHHHHHHHcccCCCceeccCCCCcCcHHHHHHHHHHhC
Confidence 5555566555532 245433 458899999999964
No 7
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]}
Probab=12.17 E-value=66 Score=28.81 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=27.8
Q ss_pred chhhhccccCCCCCCCCCCCCCC--ChhHHHHHHH
Q 044043 373 RFMVESMVNSSSETLPCTMPPPF--EPLSLEAFFE 405 (428)
Q Consensus 373 ~~~~~~~~~~~~~~~~c~~~~~~--~~~~~~~~~~ 405 (428)
.++.+-.|..|-..+||.|++=| |.+.++++.+
T Consensus 231 g~~VDaVV~aP~GAhP~~~~g~Y~~D~~~~~~y~~ 265 (317)
T d1poia_ 231 GMCVDAVVLAPYGAHPSQCYGLYDYDNPFLKVYDK 265 (317)
T ss_dssp GGGCCEEEECTTTTTTSBBTTTBCCCHHHHHHHHH
T ss_pred hhheEEEEecCCCcCCcCCcCccccCHHHHHHHHH
Confidence 46778888999999999999965 7888888775
No 8
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=11.26 E-value=1.1e+02 Score=24.71 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=20.8
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHHh
Q 044043 301 EWGNTHTRQARAIGRAGSRYMQEKL 325 (428)
Q Consensus 301 ~w~~~h~~~A~~IA~~g~~fa~~~L 325 (428)
.|+++||+.|+.|.+.+..-++..+
T Consensus 140 ~~l~~np~~a~~i~~k~i~~~~~R~ 164 (167)
T d1s16a1 140 LWLNQNVQAAELLAEMAISSAQRRM 164 (167)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999998887765443
No 9
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.23 E-value=48 Score=28.11 Aligned_cols=23 Identities=0% Similarity=-0.106 Sum_probs=17.8
Q ss_pred ccHHHHHHhhhccHHHHHHHHHH
Q 044043 294 RDIKFAVEWGNTHTRQARAIGRA 316 (428)
Q Consensus 294 ~dL~~~v~w~~~h~~~A~~IA~~ 316 (428)
.-+.++++|+++|+++|.+|+.+
T Consensus 203 ~a~~~a~~~~~~~p~ea~~~~a~ 225 (277)
T d2nxoa1 203 EAFLASRNLSLEEVEKVAEQAAR 225 (277)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHH
Confidence 34567788999999998887654
No 10
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=10.11 E-value=1.2e+02 Score=24.58 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=20.9
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHHh
Q 044043 301 EWGNTHTRQARAIGRAGSRYMQEKL 325 (428)
Q Consensus 301 ~w~~~h~~~A~~IA~~g~~fa~~~L 325 (428)
.|++.||+.|+.|.+.+..-++..+
T Consensus 139 ~~L~~np~~a~~I~~k~~~~~~aR~ 163 (172)
T d1kija1 139 EILEENPRIAKAVYEKALRAAQARE 163 (172)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999998887766544
Done!