Query 044044
Match_columns 508
No_of_seqs 731 out of 2984
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 10:56:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 6.6E-65 1.4E-69 515.5 53.6 415 83-507 382-798 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.9E-64 4.2E-69 512.1 54.8 416 83-507 418-856 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.8E-61 8.3E-66 485.8 45.9 405 83-508 99-504 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.2E-58 2.6E-63 478.8 43.9 405 81-508 232-667 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 6.1E-58 1.3E-62 473.5 43.2 410 81-508 131-635 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.7E-56 8E-61 449.7 47.5 389 83-494 170-559 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.3E-28 7.2E-33 257.8 50.2 405 81-506 475-879 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.2E-28 9.1E-33 257.0 49.9 391 80-490 508-898 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 6.6E-24 1.4E-28 192.6 32.9 387 87-498 98-489 (966)
10 PRK11447 cellulose synthase su 99.9 1.6E-22 3.5E-27 215.0 47.9 399 78-495 276-744 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 6.7E-23 1.5E-27 186.2 32.8 374 78-473 123-500 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-20 2.3E-25 189.1 50.8 405 74-492 130-571 (615)
13 PRK11788 tetratricopeptide rep 99.9 3.5E-22 7.5E-27 190.0 36.4 303 186-498 44-353 (389)
14 PRK11788 tetratricopeptide rep 99.9 5.5E-22 1.2E-26 188.7 35.3 303 114-428 42-353 (389)
15 PRK15174 Vi polysaccharide exp 99.9 2.1E-20 4.5E-25 186.3 47.1 325 82-422 53-381 (656)
16 PRK11447 cellulose synthase su 99.9 3.2E-20 7E-25 197.6 51.2 394 84-492 160-700 (1157)
17 PRK15174 Vi polysaccharide exp 99.9 1.3E-20 2.8E-25 187.8 43.9 368 107-490 42-418 (656)
18 PRK10049 pgaA outer membrane p 99.9 1.3E-19 2.8E-24 184.5 45.7 396 84-499 28-461 (765)
19 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-18 5.1E-23 172.3 48.0 382 109-504 129-548 (615)
20 PRK10049 pgaA outer membrane p 99.9 4.6E-18 9.9E-23 173.3 42.4 386 92-498 3-426 (765)
21 PRK14574 hmsH outer membrane p 99.9 4.5E-17 9.7E-22 162.9 48.4 394 83-491 46-512 (822)
22 KOG2002 TPR-containing nuclear 99.9 5.5E-18 1.2E-22 162.4 36.0 423 71-504 307-757 (1018)
23 PRK09782 bacteriophage N4 rece 99.9 3.4E-16 7.4E-21 159.9 48.7 186 83-280 56-274 (987)
24 PRK14574 hmsH outer membrane p 99.8 1.7E-15 3.7E-20 151.7 46.7 369 114-499 41-484 (822)
25 KOG4422 Uncharacterized conser 99.8 1.2E-15 2.5E-20 133.6 38.2 373 106-484 206-617 (625)
26 KOG2002 TPR-containing nuclear 99.8 4.6E-16 1E-20 149.4 37.4 408 85-505 250-723 (1018)
27 PRK09782 bacteriophage N4 rece 99.8 4.6E-15 9.9E-20 151.8 45.8 264 211-491 476-739 (987)
28 KOG2076 RNA polymerase III tra 99.8 1.8E-14 3.9E-19 137.8 41.8 354 82-446 150-544 (895)
29 KOG4422 Uncharacterized conser 99.8 8.7E-14 1.9E-18 122.1 39.4 307 106-423 115-463 (625)
30 KOG2003 TPR repeat-containing 99.8 4.3E-15 9.2E-20 131.1 30.9 386 77-478 243-709 (840)
31 KOG0495 HAT repeat protein [RN 99.8 3.2E-13 6.9E-18 124.7 43.0 351 83-450 418-775 (913)
32 KOG2003 TPR repeat-containing 99.8 3.2E-15 6.9E-20 131.9 28.7 402 87-506 217-702 (840)
33 KOG2076 RNA polymerase III tra 99.7 8.8E-14 1.9E-18 133.1 39.3 364 117-491 149-554 (895)
34 KOG0495 HAT repeat protein [RN 99.7 2.3E-12 5E-17 119.2 43.1 388 84-492 389-782 (913)
35 KOG0547 Translocase of outer m 99.7 1.3E-13 2.9E-18 123.0 33.8 400 74-491 118-565 (606)
36 TIGR00540 hemY_coli hemY prote 99.7 5.8E-14 1.3E-18 133.1 34.1 289 188-490 95-397 (409)
37 KOG1915 Cell cycle control pro 99.7 2.7E-12 5.8E-17 114.4 41.4 395 82-493 84-537 (677)
38 PRK10747 putative protoheme IX 99.7 9.8E-14 2.1E-18 130.8 35.0 283 190-491 97-389 (398)
39 PRK10747 putative protoheme IX 99.7 9.8E-14 2.1E-18 130.8 34.5 283 155-456 97-389 (398)
40 COG2956 Predicted N-acetylgluc 99.7 7.1E-14 1.5E-18 118.3 28.5 295 84-421 48-346 (389)
41 TIGR00540 hemY_coli hemY prote 99.7 2E-13 4.3E-18 129.4 34.4 293 153-456 95-398 (409)
42 PF13429 TPR_15: Tetratricopep 99.7 1.7E-16 3.7E-21 142.9 12.7 263 217-491 13-276 (280)
43 KOG1915 Cell cycle control pro 99.7 5.8E-12 1.2E-16 112.3 39.5 395 83-490 119-583 (677)
44 KOG1155 Anaphase-promoting com 99.7 6.2E-12 1.3E-16 111.8 38.8 376 106-504 163-546 (559)
45 KOG1126 DNA-binding cell divis 99.7 4.5E-14 9.8E-19 130.9 26.7 292 191-497 333-625 (638)
46 PF13429 TPR_15: Tetratricopep 99.7 3.4E-16 7.4E-21 141.0 12.7 221 151-383 53-273 (280)
47 COG2956 Predicted N-acetylgluc 99.7 9.7E-13 2.1E-17 111.5 29.6 292 191-492 49-347 (389)
48 KOG1126 DNA-binding cell divis 99.7 7E-14 1.5E-18 129.7 24.7 292 120-428 332-626 (638)
49 KOG1155 Anaphase-promoting com 99.6 6.3E-12 1.4E-16 111.8 34.7 366 83-491 176-552 (559)
50 COG3071 HemY Uncharacterized e 99.6 5.2E-12 1.1E-16 110.5 33.3 291 190-496 97-394 (400)
51 COG3071 HemY Uncharacterized e 99.6 6.4E-12 1.4E-16 110.0 32.8 288 119-422 96-390 (400)
52 KOG1173 Anaphase-promoting com 99.6 1E-11 2.3E-16 113.2 31.9 384 73-474 143-533 (611)
53 KOG1173 Anaphase-promoting com 99.6 2.3E-11 4.9E-16 111.0 31.5 285 208-506 240-530 (611)
54 PRK12370 invasion protein regu 99.6 2.7E-12 5.8E-17 126.5 26.6 252 121-388 275-536 (553)
55 KOG2047 mRNA splicing factor [ 99.5 7.9E-10 1.7E-14 102.6 39.0 411 78-506 109-630 (835)
56 KOG1156 N-terminal acetyltrans 99.5 1.6E-09 3.5E-14 100.8 37.5 388 84-494 20-470 (700)
57 PRK12370 invasion protein regu 99.5 2.8E-11 6E-16 119.3 28.2 251 191-457 275-535 (553)
58 KOG3785 Uncharacterized conser 99.5 7.1E-11 1.5E-15 101.6 26.3 396 85-502 36-498 (557)
59 KOG1129 TPR repeat-containing 99.5 5.6E-12 1.2E-16 107.1 19.2 230 181-422 227-458 (478)
60 KOG1156 N-terminal acetyltrans 99.5 4.4E-09 9.6E-14 97.9 38.6 392 76-490 46-509 (700)
61 TIGR02521 type_IV_pilW type IV 99.5 8.5E-11 1.8E-15 103.3 27.2 200 288-491 31-231 (234)
62 KOG0547 Translocase of outer m 99.5 9E-10 1.9E-14 99.0 32.2 366 110-492 118-532 (606)
63 TIGR02521 type_IV_pilW type IV 99.5 9.8E-11 2.1E-15 102.9 26.7 203 251-457 29-232 (234)
64 KOG2376 Signal recognition par 99.5 2.3E-09 5.1E-14 98.7 34.8 398 83-507 24-501 (652)
65 PF12569 NARP1: NMDA receptor- 99.4 8.4E-10 1.8E-14 105.2 32.9 127 362-490 198-332 (517)
66 PF12569 NARP1: NMDA receptor- 99.4 1.7E-09 3.7E-14 103.2 34.8 290 150-455 12-332 (517)
67 KOG1129 TPR repeat-containing 99.4 2.4E-11 5.3E-16 103.3 19.1 265 222-492 189-458 (478)
68 KOG1174 Anaphase-promoting com 99.4 7.2E-09 1.6E-13 91.4 34.6 302 179-497 196-503 (564)
69 KOG1840 Kinesin light chain [C 99.4 1.6E-10 3.5E-15 108.6 25.6 238 253-490 199-477 (508)
70 KOG4162 Predicted calmodulin-b 99.4 1.4E-08 3E-13 96.6 36.9 377 105-492 321-783 (799)
71 KOG1840 Kinesin light chain [C 99.4 2.3E-10 5E-15 107.6 25.2 243 212-455 199-477 (508)
72 KOG4318 Bicoid mRNA stability 99.4 5E-10 1.1E-14 107.6 25.9 89 94-195 13-101 (1088)
73 KOG4318 Bicoid mRNA stability 99.4 1E-10 2.3E-15 112.1 20.1 276 163-480 11-288 (1088)
74 COG3063 PilF Tfp pilus assembl 99.3 4.8E-10 1E-14 91.1 20.4 195 76-281 40-235 (250)
75 KOG2047 mRNA splicing factor [ 99.3 5.4E-07 1.2E-11 84.3 42.1 394 88-499 85-585 (835)
76 PF13041 PPR_2: PPR repeat fam 99.3 3E-12 6.6E-17 80.8 5.8 48 461-508 1-48 (50)
77 KOG0548 Molecular co-chaperone 99.3 2.7E-08 5.8E-13 91.0 32.3 370 76-457 7-455 (539)
78 PRK11189 lipoprotein NlpI; Pro 99.3 5.4E-09 1.2E-13 94.4 26.7 217 86-317 41-265 (296)
79 PRK11189 lipoprotein NlpI; Pro 99.3 7.3E-09 1.6E-13 93.6 27.0 96 214-317 66-161 (296)
80 KOG0624 dsRNA-activated protei 99.3 9.3E-08 2E-12 82.5 31.2 310 76-422 43-370 (504)
81 COG3063 PilF Tfp pilus assembl 99.3 1.2E-08 2.7E-13 83.1 24.2 198 180-387 38-236 (250)
82 PF13041 PPR_2: PPR repeat fam 99.3 2E-11 4.4E-16 77.0 6.7 47 392-438 2-48 (50)
83 cd05804 StaR_like StaR_like; a 99.3 9.5E-08 2.1E-12 89.8 34.6 199 293-492 119-336 (355)
84 KOG4162 Predicted calmodulin-b 99.3 6.5E-08 1.4E-12 92.2 32.4 363 83-457 335-783 (799)
85 cd05804 StaR_like StaR_like; a 99.3 7.5E-08 1.6E-12 90.5 33.6 202 106-316 5-214 (355)
86 KOG3785 Uncharacterized conser 99.3 4.2E-08 9.2E-13 84.9 28.3 359 114-490 29-455 (557)
87 KOG1174 Anaphase-promoting com 99.3 8.9E-08 1.9E-12 84.7 30.7 292 153-458 207-501 (564)
88 KOG1914 mRNA cleavage and poly 99.2 3.2E-06 6.8E-11 77.8 36.7 141 95-241 10-166 (656)
89 PRK04841 transcriptional regul 99.2 3.8E-07 8.2E-12 97.0 36.5 336 152-493 384-761 (903)
90 KOG1125 TPR repeat-containing 99.1 4.1E-09 8.9E-14 97.0 18.2 83 83-168 297-379 (579)
91 KOG2376 Signal recognition par 99.1 2.2E-06 4.7E-11 79.7 35.4 389 82-489 57-517 (652)
92 KOG0548 Molecular co-chaperone 99.1 3.7E-07 8.1E-12 83.7 29.7 372 114-499 9-460 (539)
93 KOG4340 Uncharacterized conser 99.1 2.3E-07 5E-12 78.6 26.2 380 86-491 25-442 (459)
94 KOG4340 Uncharacterized conser 99.1 1.9E-07 4.2E-12 79.0 24.9 328 109-455 12-373 (459)
95 KOG2053 Mitochondrial inherita 99.1 1.6E-05 3.4E-10 77.8 40.5 226 82-318 20-256 (932)
96 PRK04841 transcriptional regul 99.1 3.4E-07 7.3E-12 97.4 32.9 373 81-457 351-760 (903)
97 PF04733 Coatomer_E: Coatomer 99.1 1.4E-08 3E-13 90.4 17.5 249 221-491 10-264 (290)
98 KOG0624 dsRNA-activated protei 99.0 3.7E-06 8.1E-11 72.9 30.1 100 140-242 36-136 (504)
99 KOG1125 TPR repeat-containing 99.0 7.2E-08 1.6E-12 89.1 21.1 253 219-485 292-564 (579)
100 KOG1127 TPR repeat-containing 99.0 4.4E-07 9.5E-12 89.0 27.2 388 85-488 472-909 (1238)
101 PF04733 Coatomer_E: Coatomer 99.0 2.6E-08 5.5E-13 88.7 17.6 80 339-420 183-263 (290)
102 KOG3617 WD40 and TPR repeat-co 99.0 1.3E-06 2.7E-11 84.2 27.5 233 82-349 739-993 (1416)
103 KOG0985 Vesicle coat protein c 99.0 5.8E-06 1.2E-10 81.5 32.1 306 141-490 983-1306(1666)
104 KOG1070 rRNA processing protei 99.0 6.2E-07 1.3E-11 91.0 26.3 217 93-321 1446-1667(1710)
105 KOG1070 rRNA processing protei 98.9 9.9E-07 2.2E-11 89.6 26.9 210 211-426 1457-1667(1710)
106 PLN02789 farnesyltranstransfer 98.9 7.9E-07 1.7E-11 80.3 24.2 204 84-300 50-267 (320)
107 KOG1127 TPR repeat-containing 98.9 4.6E-07 1E-11 88.9 23.7 402 77-489 498-949 (1238)
108 KOG3617 WD40 and TPR repeat-co 98.9 5.8E-06 1.3E-10 79.8 28.8 327 106-489 725-1106(1416)
109 PLN02789 farnesyltranstransfer 98.9 6E-06 1.3E-10 74.7 27.7 130 109-241 39-171 (320)
110 KOG1128 Uncharacterized conser 98.8 3.5E-07 7.6E-12 86.9 18.9 222 249-491 394-615 (777)
111 COG5010 TadD Flp pilus assembl 98.8 2.7E-06 5.8E-11 71.3 20.4 154 329-486 72-225 (257)
112 KOG1128 Uncharacterized conser 98.8 4.8E-07 1E-11 86.0 17.9 234 108-368 399-633 (777)
113 KOG3616 Selective LIM binding 98.8 7.1E-06 1.5E-10 78.2 25.4 169 261-454 740-908 (1636)
114 PRK10370 formate-dependent nit 98.8 2.6E-06 5.6E-11 71.7 20.4 119 336-457 52-173 (198)
115 KOG3081 Vesicle coat complex C 98.8 6.6E-06 1.4E-10 69.0 21.9 49 268-317 188-236 (299)
116 KOG0985 Vesicle coat protein c 98.8 5.5E-05 1.2E-09 74.9 30.8 353 90-490 966-1368(1666)
117 COG5010 TadD Flp pilus assembl 98.7 2.1E-06 4.6E-11 71.9 18.4 157 111-277 70-226 (257)
118 TIGR03302 OM_YfiO outer membra 98.7 1.6E-06 3.4E-11 76.1 18.9 100 106-206 32-144 (235)
119 KOG3616 Selective LIM binding 98.7 1.4E-05 3.1E-10 76.3 25.5 171 294-489 738-908 (1636)
120 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.4E-13 56.7 4.1 32 458-489 2-33 (34)
121 TIGR03302 OM_YfiO outer membra 98.7 4.7E-06 1E-10 73.1 21.3 59 433-491 171-231 (235)
122 KOG3081 Vesicle coat complex C 98.7 1.1E-05 2.5E-10 67.6 21.7 30 357-386 206-235 (299)
123 PRK15179 Vi polysaccharide bio 98.7 3.2E-06 6.9E-11 84.3 22.1 170 64-242 49-218 (694)
124 PRK10370 formate-dependent nit 98.7 9.6E-07 2.1E-11 74.2 15.7 121 83-207 51-174 (198)
125 PRK15179 Vi polysaccharide bio 98.7 1.7E-05 3.6E-10 79.3 25.5 214 253-490 28-243 (694)
126 PRK14720 transcript cleavage f 98.7 1.7E-05 3.6E-10 80.1 25.4 238 141-439 30-268 (906)
127 PRK14720 transcript cleavage f 98.7 2.2E-05 4.8E-10 79.3 26.0 170 104-317 28-198 (906)
128 PRK15359 type III secretion sy 98.7 4.3E-06 9.4E-11 66.4 17.1 93 363-457 29-121 (144)
129 KOG1914 mRNA cleavage and poly 98.6 0.00044 9.6E-09 64.2 36.9 399 86-490 34-499 (656)
130 PRK15359 type III secretion sy 98.6 2.3E-06 5E-11 68.0 14.7 120 91-218 13-132 (144)
131 PF12854 PPR_1: PPR repeat 98.6 9.1E-08 2E-12 54.0 4.2 32 172-203 2-33 (34)
132 KOG3060 Uncharacterized conser 98.6 9E-05 1.9E-09 61.9 22.7 189 265-457 24-220 (289)
133 KOG2053 Mitochondrial inherita 98.5 0.0014 3.1E-08 64.7 39.1 224 117-353 19-256 (932)
134 TIGR02552 LcrH_SycD type III s 98.5 5.1E-06 1.1E-10 65.7 13.4 110 93-206 5-114 (135)
135 COG4783 Putative Zn-dependent 98.5 0.00011 2.4E-09 67.4 23.0 114 333-449 316-429 (484)
136 COG4783 Putative Zn-dependent 98.5 0.00019 4.2E-09 65.8 24.3 191 250-466 271-462 (484)
137 KOG3060 Uncharacterized conser 98.5 0.00023 5E-09 59.5 22.4 193 225-423 25-221 (289)
138 TIGR02552 LcrH_SycD type III s 98.4 7.2E-06 1.6E-10 64.8 13.4 97 359-457 18-114 (135)
139 PF09976 TPR_21: Tetratricopep 98.4 5.5E-05 1.2E-09 60.4 16.5 126 360-489 14-144 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.5E-05 9.7E-10 70.5 16.1 120 364-489 175-294 (395)
141 KOG0550 Molecular chaperone (D 98.3 0.00051 1.1E-08 61.6 21.4 263 73-352 51-350 (486)
142 PF09976 TPR_21: Tetratricopep 98.2 0.00012 2.7E-09 58.4 15.6 86 331-418 56-143 (145)
143 TIGR00756 PPR pentatricopeptid 98.2 2.9E-06 6.2E-11 48.8 4.4 33 465-497 2-34 (35)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.1E-05 1.8E-09 68.8 16.0 126 291-422 172-297 (395)
145 PF13812 PPR_3: Pentatricopept 98.2 4.6E-06 9.9E-11 47.5 4.4 33 464-496 2-34 (34)
146 KOG2041 WD40 repeat protein [G 98.0 0.0077 1.7E-07 58.0 25.5 186 87-311 679-875 (1189)
147 PF12895 Apc3: Anaphase-promot 98.0 4.8E-06 1E-10 59.3 3.5 82 84-167 2-83 (84)
148 KOG1130 Predicted G-alpha GTPa 98.0 7.4E-05 1.6E-09 66.7 10.9 133 359-491 196-343 (639)
149 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 3.1E-10 45.7 4.5 33 395-427 2-34 (35)
150 PF10037 MRP-S27: Mitochondria 98.0 0.00019 4.1E-09 66.8 13.8 124 318-441 61-186 (429)
151 KOG0550 Molecular chaperone (D 98.0 0.0012 2.6E-08 59.4 17.9 157 297-457 178-350 (486)
152 PRK15363 pathogenicity island 98.0 0.00033 7.1E-09 54.9 12.9 96 360-457 37-132 (157)
153 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00045 9.8E-09 53.0 14.0 26 466-491 79-104 (119)
154 PF10037 MRP-S27: Mitochondria 98.0 0.0002 4.4E-09 66.6 13.4 124 283-406 61-186 (429)
155 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00057 1.2E-08 52.4 14.2 100 359-458 3-106 (119)
156 cd00189 TPR Tetratricopeptide 97.9 0.00021 4.6E-09 52.0 11.5 91 398-490 5-95 (100)
157 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.5E-10 45.1 4.1 29 396-424 4-32 (34)
158 PLN03088 SGT1, suppressor of 97.9 5.9E-05 1.3E-09 70.0 9.9 91 79-172 10-100 (356)
159 cd00189 TPR Tetratricopeptide 97.9 0.00024 5.1E-09 51.8 11.5 96 360-457 2-97 (100)
160 PF05843 Suf: Suppressor of fo 97.9 0.00033 7.1E-09 62.7 14.2 131 324-457 2-136 (280)
161 KOG0553 TPR repeat-containing 97.9 6.4E-05 1.4E-09 64.6 8.8 105 72-181 82-186 (304)
162 PRK10866 outer membrane biogen 97.9 0.0014 3.1E-08 57.1 17.1 173 83-280 44-239 (243)
163 PF12895 Apc3: Anaphase-promot 97.9 2.1E-05 4.6E-10 56.0 4.7 81 406-488 2-83 (84)
164 PF14938 SNAP: Soluble NSF att 97.9 0.0018 3.9E-08 58.3 18.2 129 362-490 118-264 (282)
165 PF14938 SNAP: Soluble NSF att 97.9 0.0014 2.9E-08 59.0 17.4 184 86-317 30-225 (282)
166 PRK15363 pathogenicity island 97.9 0.00046 1E-08 54.1 12.3 97 178-282 36-132 (157)
167 PF08579 RPM2: Mitochondrial r 97.9 0.00024 5.2E-09 51.5 9.7 76 432-507 29-113 (120)
168 KOG0553 TPR repeat-containing 97.9 0.0017 3.7E-08 56.1 16.3 91 150-242 89-179 (304)
169 PLN03088 SGT1, suppressor of 97.9 0.0007 1.5E-08 62.9 15.4 89 332-422 11-99 (356)
170 CHL00033 ycf3 photosystem I as 97.9 0.00038 8.2E-09 57.3 12.3 115 86-201 14-137 (168)
171 PRK10866 outer membrane biogen 97.8 0.0071 1.5E-07 52.8 20.4 59 217-282 37-98 (243)
172 KOG2041 WD40 repeat protein [G 97.8 0.0094 2E-07 57.5 22.0 207 139-384 689-904 (1189)
173 PF01535 PPR: PPR repeat; Int 97.8 2.8E-05 6.1E-10 43.0 3.6 30 465-494 2-31 (31)
174 PF08579 RPM2: Mitochondrial r 97.8 0.00042 9.1E-09 50.3 9.8 79 257-335 29-116 (120)
175 COG4235 Cytochrome c biogenesi 97.8 0.002 4.3E-08 56.0 15.7 117 86-206 137-256 (287)
176 COG4235 Cytochrome c biogenesi 97.8 0.0015 3.3E-08 56.7 14.9 100 390-491 153-255 (287)
177 PRK02603 photosystem I assembl 97.8 0.0011 2.4E-08 54.6 13.8 87 106-193 34-122 (172)
178 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.031 6.7E-07 51.3 32.8 130 358-491 397-530 (660)
179 PRK02603 photosystem I assembl 97.8 0.0024 5.2E-08 52.7 15.5 85 326-411 38-124 (172)
180 PF05843 Suf: Suppressor of fo 97.8 0.0011 2.4E-08 59.3 14.5 129 255-386 3-135 (280)
181 KOG1130 Predicted G-alpha GTPa 97.7 0.00037 8E-09 62.4 10.8 133 289-421 196-343 (639)
182 PRK10153 DNA-binding transcrip 97.7 0.0028 6.1E-08 61.7 17.7 135 319-457 333-482 (517)
183 CHL00033 ycf3 photosystem I as 97.7 0.00082 1.8E-08 55.3 12.2 95 177-278 35-138 (168)
184 PF14559 TPR_19: Tetratricopep 97.7 6E-05 1.3E-09 51.1 4.5 62 83-148 3-64 (68)
185 KOG2280 Vacuolar assembly/sort 97.7 0.066 1.4E-06 52.5 27.3 316 148-486 443-793 (829)
186 COG4700 Uncharacterized protei 97.7 0.02 4.3E-07 45.9 18.4 128 139-274 86-214 (251)
187 PF01535 PPR: PPR repeat; Int 97.7 7.1E-05 1.5E-09 41.3 3.5 27 291-317 3-29 (31)
188 PRK10153 DNA-binding transcrip 97.7 0.003 6.5E-08 61.5 16.7 134 105-242 335-483 (517)
189 PF13525 YfiO: Outer membrane 97.6 0.0089 1.9E-07 50.8 17.7 61 218-282 11-71 (203)
190 PF12688 TPR_5: Tetratrico pep 97.6 0.0037 8.1E-08 47.3 12.8 91 365-455 8-102 (120)
191 PF13432 TPR_16: Tetratricopep 97.5 4E-05 8.7E-10 51.4 1.7 53 82-136 8-60 (65)
192 PF12688 TPR_5: Tetratrico pep 97.5 0.009 2E-07 45.2 14.4 56 401-456 9-66 (120)
193 COG3898 Uncharacterized membra 97.5 0.067 1.5E-06 48.3 33.0 288 190-496 97-396 (531)
194 COG4700 Uncharacterized protei 97.5 0.034 7.3E-07 44.7 19.4 131 320-454 86-219 (251)
195 PF14559 TPR_19: Tetratricopep 97.5 0.00047 1E-08 46.6 6.6 61 440-503 3-63 (68)
196 KOG2796 Uncharacterized conser 97.5 0.052 1.1E-06 46.2 22.1 173 325-501 179-361 (366)
197 PF06239 ECSIT: Evolutionarily 97.5 0.0058 1.2E-07 50.5 13.4 104 355-477 44-152 (228)
198 KOG1538 Uncharacterized conser 97.4 0.038 8.3E-07 53.0 19.9 98 325-457 749-846 (1081)
199 PF03704 BTAD: Bacterial trans 97.4 0.0067 1.5E-07 48.5 13.3 72 430-502 64-140 (146)
200 PF13414 TPR_11: TPR repeat; P 97.4 0.00085 1.8E-08 45.5 6.9 59 395-454 5-64 (69)
201 PF04840 Vps16_C: Vps16, C-ter 97.4 0.1 2.2E-06 47.5 28.8 79 365-453 184-262 (319)
202 PF06239 ECSIT: Evolutionarily 97.4 0.006 1.3E-07 50.4 12.6 116 307-443 33-153 (228)
203 KOG2796 Uncharacterized conser 97.4 0.07 1.5E-06 45.4 23.0 141 290-433 179-324 (366)
204 PF13525 YfiO: Outer membrane 97.4 0.03 6.6E-07 47.5 17.5 48 434-482 147-197 (203)
205 PF13432 TPR_16: Tetratricopep 97.4 0.00095 2.1E-08 44.6 6.7 52 368-420 7-58 (65)
206 PRK10803 tol-pal system protei 97.3 0.006 1.3E-07 53.7 13.2 88 404-491 154-245 (263)
207 PF13414 TPR_11: TPR repeat; P 97.3 0.00095 2.1E-08 45.3 6.6 64 357-421 2-66 (69)
208 COG3898 Uncharacterized membra 97.3 0.14 2.9E-06 46.4 30.4 282 120-421 97-391 (531)
209 PRK10803 tol-pal system protei 97.2 0.0064 1.4E-07 53.5 12.2 98 179-282 145-246 (263)
210 COG4105 ComL DNA uptake lipopr 97.2 0.07 1.5E-06 45.6 17.1 76 78-153 41-117 (254)
211 COG3118 Thioredoxin domain-con 97.2 0.037 8.1E-07 48.1 15.6 149 78-230 141-290 (304)
212 PF13281 DUF4071: Domain of un 97.1 0.18 3.8E-06 46.5 20.3 165 291-457 144-334 (374)
213 PF07079 DUF1347: Protein of u 97.1 0.25 5.5E-06 45.7 38.8 395 86-503 60-530 (549)
214 PF13424 TPR_12: Tetratricopep 97.1 0.00096 2.1E-08 46.6 4.3 69 212-281 5-74 (78)
215 PRK15331 chaperone protein Sic 97.1 0.025 5.5E-07 44.8 12.4 90 366-457 45-134 (165)
216 KOG2114 Vacuolar assembly/sort 97.1 0.35 7.6E-06 48.3 22.5 46 434-483 711-756 (933)
217 PF13371 TPR_9: Tetratricopept 97.0 0.0031 6.6E-08 43.3 6.6 54 81-136 5-58 (73)
218 PF03704 BTAD: Bacterial trans 96.9 0.017 3.8E-07 46.0 11.2 70 214-290 64-138 (146)
219 PF13371 TPR_9: Tetratricopept 96.9 0.0074 1.6E-07 41.3 7.9 55 367-422 4-58 (73)
220 PF13424 TPR_12: Tetratricopep 96.9 0.0033 7.2E-08 43.8 5.9 60 395-454 7-72 (78)
221 PRK15331 chaperone protein Sic 96.9 0.0049 1.1E-07 48.7 7.2 85 83-170 49-133 (165)
222 KOG1538 Uncharacterized conser 96.8 0.13 2.7E-06 49.7 17.1 84 287-383 746-829 (1081)
223 KOG1585 Protein required for f 96.8 0.066 1.4E-06 45.1 13.6 168 123-311 74-250 (308)
224 PF13281 DUF4071: Domain of un 96.8 0.41 8.9E-06 44.1 20.3 33 371-403 195-227 (374)
225 KOG1258 mRNA processing protei 96.8 0.57 1.2E-05 45.2 34.8 376 86-479 60-491 (577)
226 PF09205 DUF1955: Domain of un 96.8 0.15 3.3E-06 38.4 13.6 139 335-495 14-152 (161)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.02 4.4E-07 53.2 11.0 58 77-136 81-141 (453)
228 PF10300 DUF3808: Protein of u 96.7 0.15 3.3E-06 49.4 17.4 160 328-490 193-374 (468)
229 COG4785 NlpI Lipoprotein NlpI, 96.6 0.21 4.6E-06 41.4 14.9 195 75-282 69-266 (297)
230 KOG1258 mRNA processing protei 96.6 0.71 1.5E-05 44.5 31.1 347 83-442 91-489 (577)
231 PRK11906 transcriptional regul 96.6 0.16 3.5E-06 47.6 15.9 148 86-238 273-433 (458)
232 KOG2610 Uncharacterized conser 96.6 0.065 1.4E-06 47.3 12.6 154 82-239 114-274 (491)
233 PF04053 Coatomer_WDAD: Coatom 96.5 0.074 1.6E-06 50.7 13.8 157 115-313 269-427 (443)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.058 1.3E-06 50.3 12.6 64 357-422 74-141 (453)
235 PF12921 ATP13: Mitochondrial 96.5 0.054 1.2E-06 41.5 10.4 86 392-477 1-102 (126)
236 PRK11906 transcriptional regul 96.5 0.47 1E-05 44.6 17.8 147 339-488 274-432 (458)
237 COG1729 Uncharacterized protei 96.4 0.063 1.4E-06 46.3 11.4 96 395-491 144-243 (262)
238 PF10300 DUF3808: Protein of u 96.3 0.3 6.5E-06 47.4 16.9 162 291-455 191-374 (468)
239 COG3118 Thioredoxin domain-con 96.3 0.29 6.2E-06 42.9 14.7 124 116-242 143-266 (304)
240 KOG0543 FKBP-type peptidyl-pro 96.3 0.11 2.3E-06 47.5 12.3 95 359-456 258-354 (397)
241 smart00299 CLH Clathrin heavy 96.2 0.37 7.9E-06 38.0 14.4 126 326-474 10-136 (140)
242 PF08631 SPO22: Meiosis protei 96.1 0.94 2E-05 40.7 26.2 224 263-490 3-273 (278)
243 PF12921 ATP13: Mitochondrial 96.1 0.13 2.8E-06 39.5 10.7 86 213-298 3-98 (126)
244 PF04053 Coatomer_WDAD: Coatom 96.1 0.23 4.9E-06 47.5 14.6 154 263-452 271-426 (443)
245 KOG1941 Acetylcholine receptor 96.1 0.29 6.3E-06 43.9 13.6 169 214-384 85-272 (518)
246 KOG4555 TPR repeat-containing 96.0 0.097 2.1E-06 39.4 8.9 89 82-172 54-145 (175)
247 COG4105 ComL DNA uptake lipopr 96.0 0.92 2E-05 39.0 20.8 75 221-299 43-117 (254)
248 KOG0543 FKBP-type peptidyl-pro 95.9 0.2 4.3E-06 45.8 12.5 141 328-491 213-354 (397)
249 KOG4555 TPR repeat-containing 95.9 0.27 5.9E-06 37.1 10.9 90 367-458 52-145 (175)
250 PF04184 ST7: ST7 protein; In 95.9 0.49 1.1E-05 44.6 14.9 64 178-241 260-324 (539)
251 COG1729 Uncharacterized protei 95.9 0.16 3.5E-06 43.9 11.1 99 214-317 144-244 (262)
252 KOG2610 Uncharacterized conser 95.8 0.69 1.5E-05 41.2 14.8 155 264-420 114-274 (491)
253 PF04840 Vps16_C: Vps16, C-ter 95.8 1.5 3.2E-05 40.1 31.6 110 325-454 179-288 (319)
254 PF13512 TPR_18: Tetratricopep 95.8 0.46 9.9E-06 36.9 12.2 79 218-300 16-94 (142)
255 KOG1920 IkappaB kinase complex 95.8 3.2 6.9E-05 43.7 21.6 28 213-240 791-820 (1265)
256 KOG1941 Acetylcholine receptor 95.7 0.33 7.1E-06 43.6 12.4 227 264-490 17-273 (518)
257 PF13512 TPR_18: Tetratricopep 95.6 0.54 1.2E-05 36.6 12.1 75 365-439 17-93 (142)
258 PF13431 TPR_17: Tetratricopep 95.6 0.01 2.2E-07 33.3 2.1 32 94-127 2-33 (34)
259 PF04184 ST7: ST7 protein; In 95.6 1.7 3.7E-05 41.2 17.3 57 399-455 265-322 (539)
260 KOG2280 Vacuolar assembly/sort 95.6 2.8 6.1E-05 41.8 25.1 358 75-453 393-795 (829)
261 KOG2114 Vacuolar assembly/sort 95.5 2.5 5.3E-05 42.7 18.9 151 70-239 367-517 (933)
262 COG4649 Uncharacterized protei 95.5 0.66 1.4E-05 37.1 12.2 123 119-241 70-196 (221)
263 COG0457 NrfG FOG: TPR repeat [ 95.2 1.9 4E-05 37.2 30.2 87 403-490 177-263 (291)
264 PF13428 TPR_14: Tetratricopep 95.0 0.072 1.6E-06 32.0 4.7 38 109-147 3-40 (44)
265 PF13428 TPR_14: Tetratricopep 94.9 0.11 2.3E-06 31.2 5.3 25 363-387 6-30 (44)
266 COG0457 NrfG FOG: TPR repeat [ 94.9 2.3 4.9E-05 36.6 29.3 97 212-315 59-157 (291)
267 PF09613 HrpB1_HrpK: Bacterial 94.8 0.8 1.7E-05 36.4 11.1 84 85-172 24-107 (160)
268 PF08631 SPO22: Meiosis protei 94.8 2.8 6.2E-05 37.6 25.7 165 189-357 5-191 (278)
269 KOG1585 Protein required for f 94.8 2.3 4.9E-05 36.3 18.3 206 254-485 32-249 (308)
270 smart00299 CLH Clathrin heavy 94.8 1.6 3.4E-05 34.4 15.7 129 108-265 8-137 (140)
271 COG4649 Uncharacterized protei 94.7 1.8 3.9E-05 34.7 13.6 122 189-316 70-195 (221)
272 PF09205 DUF1955: Domain of un 94.7 1.4 3.1E-05 33.5 12.8 63 396-459 89-151 (161)
273 COG3629 DnrI DNA-binding trans 94.7 0.38 8.2E-06 42.4 9.9 80 392-472 152-236 (280)
274 KOG1550 Extracellular protein 94.6 5.4 0.00012 39.9 25.1 77 373-457 454-538 (552)
275 KOG1920 IkappaB kinase complex 94.6 4.2 9.1E-05 42.9 18.3 135 291-453 911-1051(1265)
276 PF13170 DUF4003: Protein of u 94.6 3.3 7.2E-05 37.3 17.6 133 304-438 78-227 (297)
277 PRK15180 Vi polysaccharide bio 94.6 4.2 9.1E-05 38.3 26.2 121 83-207 301-421 (831)
278 PF13170 DUF4003: Protein of u 94.6 3.4 7.4E-05 37.3 20.6 148 269-418 78-242 (297)
279 PF10345 Cohesin_load: Cohesin 94.3 7.1 0.00015 39.8 29.5 165 213-384 60-251 (608)
280 PF10602 RPN7: 26S proteasome 94.3 0.63 1.4E-05 38.3 9.9 95 394-490 37-140 (177)
281 KOG3941 Intermediate in Toll s 94.1 0.6 1.3E-05 40.5 9.5 104 321-443 65-173 (406)
282 PF13176 TPR_7: Tetratricopept 94.0 0.073 1.6E-06 30.3 2.9 25 466-490 2-26 (36)
283 KOG3941 Intermediate in Toll s 94.0 0.6 1.3E-05 40.5 9.2 49 251-299 65-118 (406)
284 KOG1550 Extracellular protein 93.7 8.5 0.00018 38.6 27.7 78 408-493 454-539 (552)
285 PF13176 TPR_7: Tetratricopept 93.6 0.19 4.2E-06 28.5 4.2 23 396-418 2-24 (36)
286 COG3629 DnrI DNA-binding trans 93.6 1.1 2.3E-05 39.6 10.5 78 359-437 154-236 (280)
287 PF10602 RPN7: 26S proteasome 93.4 3 6.6E-05 34.3 12.5 61 325-385 38-100 (177)
288 PF13431 TPR_17: Tetratricopep 92.9 0.15 3.2E-06 28.6 2.9 24 390-413 10-33 (34)
289 PF07079 DUF1347: Protein of u 92.5 9.4 0.0002 36.0 36.5 95 407-504 394-501 (549)
290 PF10345 Cohesin_load: Cohesin 92.5 14 0.0003 37.7 34.3 404 84-490 73-604 (608)
291 KOG4648 Uncharacterized conser 92.4 0.8 1.7E-05 40.9 8.0 94 75-171 101-194 (536)
292 TIGR02561 HrpB1_HrpK type III 92.4 3.7 8.1E-05 32.2 10.6 52 84-137 23-74 (153)
293 KOG0276 Vesicle coat complex C 92.2 1.8 3.9E-05 41.9 10.5 149 266-454 599-747 (794)
294 PF09613 HrpB1_HrpK: Bacterial 92.2 5.1 0.00011 32.0 13.7 52 369-422 21-73 (160)
295 KOG2396 HAT (Half-A-TPR) repea 92.0 12 0.00025 35.8 34.7 98 391-491 457-558 (568)
296 PF11207 DUF2989: Protein of u 92.0 3.2 6.9E-05 34.5 10.5 79 403-483 117-198 (203)
297 KOG0276 Vesicle coat complex C 91.9 2.3 4.9E-05 41.3 10.8 131 109-278 616-746 (794)
298 KOG4570 Uncharacterized conser 91.8 1.3 2.9E-05 39.1 8.6 103 353-457 59-164 (418)
299 PF07035 Mic1: Colon cancer-as 91.8 6 0.00013 32.0 15.8 33 310-342 16-48 (167)
300 COG3947 Response regulator con 91.4 9.5 0.00021 33.7 16.7 72 430-502 281-357 (361)
301 PF02259 FAT: FAT domain; Int 91.4 12 0.00026 34.9 24.6 52 114-169 5-56 (352)
302 PF00637 Clathrin: Region in C 91.3 0.017 3.6E-07 46.0 -3.2 84 113-203 13-96 (143)
303 COG5107 RNA14 Pre-mRNA 3'-end 91.3 13 0.00028 35.0 35.7 130 324-457 398-531 (660)
304 PF08424 NRDE-2: NRDE-2, neces 91.3 12 0.00026 34.5 16.4 146 93-242 7-184 (321)
305 PRK15180 Vi polysaccharide bio 91.2 2.4 5.1E-05 39.9 9.9 123 332-458 298-421 (831)
306 COG4785 NlpI Lipoprotein NlpI, 91.1 8.4 0.00018 32.4 16.0 31 212-242 99-129 (297)
307 PF00515 TPR_1: Tetratricopept 90.9 0.74 1.6E-05 25.5 4.4 27 465-491 3-29 (34)
308 cd00923 Cyt_c_Oxidase_Va Cytoc 90.9 2.4 5.3E-05 30.2 7.5 62 408-470 22-83 (103)
309 KOG2066 Vacuolar assembly/sort 90.8 21 0.00044 36.3 25.6 101 115-224 364-467 (846)
310 KOG1586 Protein required for f 90.7 9.8 0.00021 32.4 19.2 25 296-320 162-186 (288)
311 COG2909 MalT ATP-dependent tra 90.7 23 0.00049 36.6 27.1 322 124-453 298-684 (894)
312 COG2976 Uncharacterized protei 90.7 8.6 0.00019 31.8 14.5 91 401-493 97-189 (207)
313 KOG4234 TPR repeat-containing 90.6 1.6 3.4E-05 36.0 7.3 58 78-135 102-162 (271)
314 PF02284 COX5A: Cytochrome c o 90.6 4.2 9.1E-05 29.4 8.5 47 411-457 28-74 (108)
315 PF07575 Nucleopor_Nup85: Nup8 90.6 20 0.00044 36.1 16.9 26 107-133 149-174 (566)
316 PF11207 DUF2989: Protein of u 90.4 3.5 7.7E-05 34.2 9.3 72 375-447 123-197 (203)
317 KOG2471 TPR repeat-containing 90.2 10 0.00022 36.0 13.0 107 367-475 249-381 (696)
318 PF07719 TPR_2: Tetratricopept 90.1 0.87 1.9E-05 25.1 4.2 27 465-491 3-29 (34)
319 PF00515 TPR_1: Tetratricopept 89.6 1 2.3E-05 24.8 4.3 26 396-421 4-29 (34)
320 PRK09687 putative lyase; Provi 89.5 15 0.00033 32.9 27.0 232 251-507 35-276 (280)
321 KOG0890 Protein kinase of the 89.4 48 0.001 38.6 25.3 321 147-492 1388-1731(2382)
322 TIGR03504 FimV_Cterm FimV C-te 89.0 1.3 2.8E-05 26.5 4.4 24 469-492 5-28 (44)
323 KOG4234 TPR repeat-containing 89.0 7 0.00015 32.4 9.8 90 366-457 103-197 (271)
324 PF13374 TPR_10: Tetratricopep 88.9 1.2 2.6E-05 25.9 4.5 27 464-490 3-29 (42)
325 COG2976 Uncharacterized protei 88.8 12 0.00027 30.9 13.6 89 332-422 98-188 (207)
326 PF04097 Nic96: Nup93/Nic96; 88.6 31 0.00066 35.2 21.0 47 107-155 112-158 (613)
327 KOG2471 TPR repeat-containing 88.5 17 0.00037 34.7 13.1 107 400-508 247-379 (696)
328 PF13374 TPR_10: Tetratricopep 88.3 1.5 3.2E-05 25.5 4.5 26 395-420 4-29 (42)
329 COG2909 MalT ATP-dependent tra 88.1 35 0.00077 35.3 28.7 226 263-488 425-684 (894)
330 PF06552 TOM20_plant: Plant sp 88.1 3.2 7E-05 33.7 7.3 65 87-155 7-82 (186)
331 PF07035 Mic1: Colon cancer-as 87.9 13 0.00028 30.1 15.1 20 259-278 95-114 (167)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 87.9 4.9 0.00011 28.7 7.2 48 374-421 23-70 (103)
333 TIGR02561 HrpB1_HrpK type III 87.5 12 0.00027 29.4 12.1 51 190-242 23-74 (153)
334 COG3947 Response regulator con 87.4 20 0.00044 31.7 17.1 59 215-280 282-340 (361)
335 PF07719 TPR_2: Tetratricopept 86.9 2.2 4.8E-05 23.3 4.5 26 396-421 4-29 (34)
336 KOG4570 Uncharacterized conser 86.9 15 0.00033 32.8 11.2 100 250-353 61-165 (418)
337 KOG0890 Protein kinase of the 86.7 71 0.0015 37.4 25.3 150 112-277 1388-1542(2382)
338 PRK11619 lytic murein transgly 86.7 40 0.00088 34.5 30.1 314 117-455 43-373 (644)
339 PF06552 TOM20_plant: Plant sp 86.5 7.7 0.00017 31.6 8.6 41 410-458 97-137 (186)
340 KOG2066 Vacuolar assembly/sort 86.4 41 0.00089 34.3 25.1 98 85-189 370-467 (846)
341 PF02284 COX5A: Cytochrome c o 85.8 11 0.00024 27.3 8.7 48 195-242 28-75 (108)
342 PF13181 TPR_8: Tetratricopept 85.1 3 6.6E-05 22.8 4.4 27 395-421 3-29 (34)
343 COG4455 ImpE Protein of avirul 84.5 8.6 0.00019 32.4 8.2 75 326-401 4-80 (273)
344 COG0790 FOG: TPR repeat, SEL1 84.5 31 0.00067 31.2 24.4 85 265-355 53-145 (292)
345 COG4455 ImpE Protein of avirul 84.5 6.7 0.00015 33.0 7.6 77 109-186 3-81 (273)
346 PRK11619 lytic murein transgly 84.3 53 0.0011 33.7 30.8 256 146-421 103-374 (644)
347 PF07163 Pex26: Pex26 protein; 84.2 17 0.00036 32.1 10.1 87 260-346 90-181 (309)
348 PF13181 TPR_8: Tetratricopept 84.2 3.5 7.6E-05 22.6 4.4 27 465-491 3-29 (34)
349 COG1747 Uncharacterized N-term 83.2 46 0.001 32.2 25.8 164 287-457 65-234 (711)
350 PF08424 NRDE-2: NRDE-2, neces 83.2 38 0.00082 31.2 17.8 77 342-420 50-129 (321)
351 KOG4648 Uncharacterized conser 82.9 9.4 0.0002 34.5 8.4 51 187-238 107-157 (536)
352 COG1747 Uncharacterized N-term 82.9 47 0.001 32.1 24.9 178 174-365 63-246 (711)
353 PF07721 TPR_4: Tetratricopept 82.6 2.2 4.9E-05 21.9 2.9 20 468-487 6-25 (26)
354 PF13174 TPR_6: Tetratricopept 82.6 3 6.5E-05 22.5 3.7 24 468-491 5-28 (33)
355 PF00637 Clathrin: Region in C 82.2 0.63 1.4E-05 36.8 1.0 85 148-239 13-97 (143)
356 TIGR02508 type_III_yscG type I 82.1 17 0.00036 26.3 8.6 51 437-493 48-98 (115)
357 PF07163 Pex26: Pex26 protein; 81.0 25 0.00054 31.0 10.0 90 292-381 87-181 (309)
358 PF13174 TPR_6: Tetratricopept 80.6 2 4.4E-05 23.3 2.5 25 112-136 5-29 (33)
359 PF02259 FAT: FAT domain; Int 80.1 51 0.0011 30.7 25.7 64 358-421 146-212 (352)
360 TIGR03504 FimV_Cterm FimV C-te 80.0 4.5 9.8E-05 24.2 3.8 23 399-421 5-27 (44)
361 PF09986 DUF2225: Uncharacteri 79.7 26 0.00056 30.0 9.9 89 405-493 89-195 (214)
362 COG0790 FOG: TPR repeat, SEL1 79.0 49 0.0011 29.9 25.2 115 338-458 92-221 (292)
363 PF11848 DUF3368: Domain of un 78.1 8.6 0.00019 23.5 4.8 34 473-506 12-45 (48)
364 KOG4642 Chaperone-dependent E3 77.5 46 0.001 28.7 12.9 122 76-201 15-141 (284)
365 KOG4077 Cytochrome c oxidase, 77.5 18 0.00039 27.4 7.0 47 411-457 67-113 (149)
366 COG5159 RPN6 26S proteasome re 77.5 51 0.0011 29.2 16.2 200 217-422 8-235 (421)
367 PF10579 Rapsyn_N: Rapsyn N-te 76.5 9.5 0.00021 26.2 5.0 46 440-485 18-65 (80)
368 PF13762 MNE1: Mitochondrial s 75.1 39 0.00084 26.6 9.0 93 384-476 28-128 (145)
369 KOG1308 Hsp70-interacting prot 75.0 1.8 3.9E-05 38.9 1.7 89 82-174 125-214 (377)
370 PRK09687 putative lyase; Provi 74.9 64 0.0014 29.0 28.3 17 357-373 205-221 (280)
371 KOG1586 Protein required for f 74.9 54 0.0012 28.2 20.3 62 226-288 128-189 (288)
372 PF04910 Tcf25: Transcriptiona 74.8 76 0.0016 29.8 17.7 130 99-240 34-167 (360)
373 PF14561 TPR_20: Tetratricopep 74.7 28 0.00061 24.8 7.9 65 91-157 8-73 (90)
374 KOG1464 COP9 signalosome, subu 74.4 60 0.0013 28.5 22.7 192 225-420 40-258 (440)
375 PF10579 Rapsyn_N: Rapsyn N-te 74.2 13 0.00029 25.5 5.2 47 405-451 18-66 (80)
376 KOG2063 Vacuolar assembly/sort 72.6 1.4E+02 0.0029 31.8 17.8 29 214-242 506-534 (877)
377 COG5159 RPN6 26S proteasome re 72.0 72 0.0016 28.4 12.0 23 398-420 130-152 (421)
378 smart00386 HAT HAT (Half-A-TPR 71.2 9 0.0002 20.4 3.5 29 85-115 1-29 (33)
379 KOG0403 Neoplastic transformat 70.7 1E+02 0.0022 29.4 18.4 369 111-508 218-626 (645)
380 PF11846 DUF3366: Domain of un 70.4 25 0.00054 29.5 7.5 32 425-456 141-172 (193)
381 KOG4507 Uncharacterized conser 70.3 30 0.00064 34.0 8.4 87 84-171 226-312 (886)
382 KOG0376 Serine-threonine phosp 69.9 9.1 0.0002 36.3 5.0 104 80-188 13-116 (476)
383 KOG4077 Cytochrome c oxidase, 69.3 40 0.00087 25.7 7.2 47 376-422 67-113 (149)
384 KOG4507 Uncharacterized conser 69.3 39 0.00084 33.3 8.9 87 119-206 619-705 (886)
385 KOG2063 Vacuolar assembly/sort 69.0 1.6E+02 0.0035 31.2 20.8 116 109-224 506-638 (877)
386 PF11663 Toxin_YhaV: Toxin wit 68.8 3.7 8E-05 31.4 1.9 30 475-506 107-136 (140)
387 TIGR02508 type_III_yscG type I 68.7 42 0.00092 24.4 8.0 15 222-236 49-63 (115)
388 PRK10564 maltose regulon perip 68.6 14 0.00031 32.9 5.7 37 466-502 260-296 (303)
389 smart00028 TPR Tetratricopepti 68.3 10 0.00022 19.5 3.4 23 398-420 6-28 (34)
390 PF14689 SPOB_a: Sensor_kinase 68.0 15 0.00031 24.0 4.4 23 398-420 28-50 (62)
391 PF13929 mRNA_stabil: mRNA sta 67.6 93 0.002 27.9 17.7 116 191-311 142-261 (292)
392 KOG2908 26S proteasome regulat 67.3 1E+02 0.0022 28.2 10.8 67 363-429 80-156 (380)
393 PF04190 DUF410: Protein of un 66.7 94 0.002 27.6 16.5 28 250-277 87-114 (260)
394 PF07575 Nucleopor_Nup85: Nup8 66.2 1.2E+02 0.0027 30.6 12.7 14 120-133 310-323 (566)
395 KOG1114 Tripeptidyl peptidase 65.9 1.9E+02 0.0041 30.8 14.3 175 86-280 1090-1293(1304)
396 KOG4521 Nuclear pore complex, 65.6 2.1E+02 0.0046 31.2 15.9 180 77-277 926-1126(1480)
397 KOG4642 Chaperone-dependent E3 65.6 91 0.002 27.0 10.9 118 333-454 20-143 (284)
398 PHA02875 ankyrin repeat protei 64.7 1.1E+02 0.0024 29.4 11.7 209 273-500 15-232 (413)
399 KOG0991 Replication factor C, 64.5 94 0.002 26.8 13.7 138 326-473 133-282 (333)
400 KOG0686 COP9 signalosome, subu 64.0 1.3E+02 0.0029 28.3 14.7 165 143-316 151-332 (466)
401 PF12862 Apc5: Anaphase-promot 63.9 50 0.0011 23.7 7.0 53 404-456 9-69 (94)
402 PF09670 Cas_Cas02710: CRISPR- 63.8 1.2E+02 0.0027 28.7 11.4 56 115-171 139-198 (379)
403 PF14853 Fis1_TPR_C: Fis1 C-te 63.5 21 0.00045 22.4 4.2 23 434-456 7-29 (53)
404 PF14689 SPOB_a: Sensor_kinase 63.2 21 0.00045 23.3 4.4 45 194-240 7-51 (62)
405 KOG1464 COP9 signalosome, subu 62.9 1.1E+02 0.0024 27.0 23.1 254 191-453 41-328 (440)
406 KOG1308 Hsp70-interacting prot 62.6 13 0.00028 33.7 4.3 87 336-424 127-213 (377)
407 PF11846 DUF3366: Domain of un 62.6 42 0.00091 28.1 7.4 32 390-421 141-172 (193)
408 PRK09857 putative transposase; 61.4 82 0.0018 28.5 9.3 57 440-497 218-274 (292)
409 PF12862 Apc5: Anaphase-promot 61.1 58 0.0013 23.3 7.2 54 438-491 8-69 (94)
410 KOG0128 RNA-binding protein SA 61.0 2.1E+02 0.0047 29.8 32.9 148 88-240 96-259 (881)
411 KOG0292 Vesicle coat complex C 60.5 48 0.001 34.4 8.1 96 404-499 1002-1120(1202)
412 KOG0686 COP9 signalosome, subu 59.6 1.6E+02 0.0034 27.8 14.8 173 254-435 151-351 (466)
413 cd00280 TRFH Telomeric Repeat 59.2 85 0.0018 25.9 7.9 22 400-421 118-139 (200)
414 PF09670 Cas_Cas02710: CRISPR- 58.9 1.6E+02 0.0034 28.0 11.2 56 296-352 139-198 (379)
415 KOG1839 Uncharacterized protei 58.5 1.7E+02 0.0036 32.3 11.9 160 151-310 941-1121(1236)
416 KOG2297 Predicted translation 58.5 1.4E+02 0.0031 26.9 19.7 71 299-378 266-341 (412)
417 PRK10941 hypothetical protein; 58.1 1.4E+02 0.003 26.7 10.6 62 180-242 184-245 (269)
418 PF11817 Foie-gras_1: Foie gra 57.6 72 0.0016 28.1 8.2 58 432-489 182-244 (247)
419 KOG0376 Serine-threonine phosp 57.3 30 0.00064 33.1 5.9 104 330-438 11-115 (476)
420 COG4976 Predicted methyltransf 56.6 44 0.00096 28.6 6.1 55 81-137 5-59 (287)
421 PF10366 Vps39_1: Vacuolar sor 56.5 62 0.0013 24.0 6.5 26 431-456 42-67 (108)
422 KOG3364 Membrane protein invol 56.1 95 0.0021 24.2 10.4 67 391-457 30-100 (149)
423 KOG0687 26S proteasome regulat 55.9 1.6E+02 0.0036 26.8 14.5 97 253-351 104-209 (393)
424 PF11663 Toxin_YhaV: Toxin wit 54.5 15 0.00033 28.2 3.0 32 265-298 107-138 (140)
425 PF04190 DUF410: Protein of un 54.5 1.6E+02 0.0034 26.2 18.9 25 357-381 89-113 (260)
426 KOG0545 Aryl-hydrocarbon recep 54.3 1.5E+02 0.0032 25.9 8.8 105 78-183 185-305 (329)
427 KOG1839 Uncharacterized protei 54.3 1.8E+02 0.0038 32.1 11.4 161 116-276 941-1122(1236)
428 KOG4521 Nuclear pore complex, 54.1 3.3E+02 0.0072 29.9 13.5 153 221-380 929-1124(1480)
429 KOG3807 Predicted membrane pro 54.1 1.7E+02 0.0038 26.6 11.7 61 217-282 280-340 (556)
430 PRK13184 pknD serine/threonine 54.1 3.2E+02 0.0069 29.6 27.9 181 267-455 670-867 (932)
431 PRK10564 maltose regulon perip 53.7 28 0.00061 31.2 4.9 32 109-140 259-290 (303)
432 PF10475 DUF2450: Protein of u 53.7 1.2E+02 0.0026 27.5 9.2 50 185-240 106-155 (291)
433 PF00244 14-3-3: 14-3-3 protei 53.3 1.5E+02 0.0034 25.8 9.9 58 258-315 6-64 (236)
434 PRK10941 hypothetical protein; 53.0 1.7E+02 0.0037 26.2 10.9 58 364-422 187-244 (269)
435 PF15297 CKAP2_C: Cytoskeleton 52.6 1.6E+02 0.0036 27.1 9.4 64 409-474 119-186 (353)
436 PF09477 Type_III_YscG: Bacter 52.3 94 0.002 23.0 9.1 79 372-457 20-98 (116)
437 PF11817 Foie-gras_1: Foie gra 51.8 70 0.0015 28.1 7.3 20 81-100 20-39 (247)
438 KOG4567 GTPase-activating prot 51.3 1.1E+02 0.0024 27.6 7.9 42 414-455 264-305 (370)
439 COG0735 Fur Fe2+/Zn2+ uptake r 50.3 95 0.0021 24.6 7.0 61 276-337 9-69 (145)
440 PF13929 mRNA_stabil: mRNA sta 50.1 1.9E+02 0.0042 26.0 20.5 63 390-452 199-262 (292)
441 KOG3807 Predicted membrane pro 50.0 2.1E+02 0.0044 26.2 11.7 59 181-241 279-340 (556)
442 PF09477 Type_III_YscG: Bacter 49.8 1E+02 0.0023 22.8 9.9 78 192-282 21-98 (116)
443 COG0735 Fur Fe2+/Zn2+ uptake r 49.6 1.3E+02 0.0028 23.8 8.2 47 132-179 11-57 (145)
444 PF11848 DUF3368: Domain of un 49.1 60 0.0013 19.8 5.1 31 119-149 14-44 (48)
445 COG5187 RPN7 26S proteasome re 48.9 2E+02 0.0043 25.8 13.1 98 252-351 114-220 (412)
446 PRK08691 DNA polymerase III su 48.3 3.4E+02 0.0073 28.2 12.3 86 373-461 179-278 (709)
447 KOG4279 Serine/threonine prote 48.0 3.4E+02 0.0073 28.2 12.9 121 88-213 180-321 (1226)
448 PF03745 DUF309: Domain of unk 48.0 76 0.0017 20.7 6.0 49 438-486 9-62 (62)
449 KOG0687 26S proteasome regulat 47.7 2.2E+02 0.0049 26.0 14.8 97 358-456 104-209 (393)
450 KOG2005 26S proteasome regulat 47.0 3.3E+02 0.0072 27.8 21.1 72 82-164 189-261 (878)
451 KOG0128 RNA-binding protein SA 47.0 3.7E+02 0.0079 28.3 31.5 203 140-351 111-340 (881)
452 PF00244 14-3-3: 14-3-3 protei 46.8 1.3E+02 0.0027 26.3 7.9 59 292-350 5-64 (236)
453 COG5108 RPO41 Mitochondrial DN 46.4 1.2E+02 0.0026 30.6 8.1 75 112-189 33-115 (1117)
454 KOG2034 Vacuolar sorting prote 46.3 3.9E+02 0.0083 28.3 24.0 273 115-419 366-687 (911)
455 COG5108 RPO41 Mitochondrial DN 45.1 1.2E+02 0.0025 30.7 7.8 75 398-475 33-115 (1117)
456 COG5187 RPN7 26S proteasome re 44.8 2.3E+02 0.0051 25.4 14.0 97 323-421 115-220 (412)
457 PRK13342 recombination factor 44.6 3E+02 0.0065 26.5 18.5 21 267-287 244-264 (413)
458 PF13762 MNE1: Mitochondrial s 43.7 1.6E+02 0.0035 23.3 11.1 93 349-441 28-128 (145)
459 PF10366 Vps39_1: Vacuolar sor 43.5 1.4E+02 0.0029 22.3 7.1 27 395-421 41-67 (108)
460 PF04762 IKI3: IKI3 family; I 42.6 4.8E+02 0.01 28.5 12.8 30 288-317 812-843 (928)
461 PF09454 Vps23_core: Vps23 cor 42.3 63 0.0014 21.3 4.1 48 175-223 6-53 (65)
462 PF10255 Paf67: RNA polymerase 42.0 3.2E+02 0.0069 26.2 11.0 66 215-280 125-191 (404)
463 PF04097 Nic96: Nup93/Nic96; 41.2 4.2E+02 0.009 27.3 19.5 44 181-225 115-158 (613)
464 KOG2659 LisH motif-containing 40.5 2.4E+02 0.0052 24.3 9.5 96 355-452 23-127 (228)
465 PRK12798 chemotaxis protein; R 40.1 3.4E+02 0.0074 25.9 21.8 237 198-441 98-343 (421)
466 KOG2300 Uncharacterized conser 39.9 3.7E+02 0.008 26.3 32.7 365 85-455 61-512 (629)
467 PRK07003 DNA polymerase III su 39.7 4.8E+02 0.01 27.6 12.1 92 410-504 181-286 (830)
468 PF09454 Vps23_core: Vps23 cor 39.6 1.1E+02 0.0024 20.2 4.9 47 106-153 7-53 (65)
469 PRK14951 DNA polymerase III su 39.3 4.4E+02 0.0096 27.0 11.8 85 374-461 185-283 (618)
470 PF15297 CKAP2_C: Cytoskeleton 38.4 3.3E+02 0.0071 25.3 10.5 67 87-153 119-186 (353)
471 PF08311 Mad3_BUB1_I: Mad3/BUB 38.1 1.8E+02 0.004 22.3 9.4 42 341-382 81-123 (126)
472 KOG3677 RNA polymerase I-assoc 37.4 3.4E+02 0.0073 25.9 9.1 61 144-204 237-299 (525)
473 cd08819 CARD_MDA5_2 Caspase ac 37.3 1.5E+02 0.0033 21.0 7.1 9 374-382 52-60 (88)
474 PF09986 DUF2225: Uncharacteri 37.3 2.7E+02 0.0058 23.9 11.8 26 432-457 169-194 (214)
475 cd08819 CARD_MDA5_2 Caspase ac 37.2 1.5E+02 0.0033 21.0 7.4 15 441-455 49-63 (88)
476 PF12926 MOZART2: Mitotic-spin 36.4 1.5E+02 0.0033 20.9 8.0 42 449-490 29-70 (88)
477 PF10255 Paf67: RNA polymerase 36.3 1.1E+02 0.0023 29.2 6.1 62 360-421 124-192 (404)
478 PF02847 MA3: MA3 domain; Int 36.0 1.8E+02 0.0039 21.5 6.8 19 365-383 9-27 (113)
479 PF14853 Fis1_TPR_C: Fis1 C-te 35.8 1.1E+02 0.0024 19.2 6.0 24 399-422 7-30 (53)
480 PF02847 MA3: MA3 domain; Int 35.5 1.6E+02 0.0034 21.8 6.1 19 295-313 9-27 (113)
481 PRK14956 DNA polymerase III su 35.3 2.7E+02 0.0059 27.4 8.8 103 46-148 165-289 (484)
482 KOG4814 Uncharacterized conser 35.2 3.6E+02 0.0079 27.4 9.4 90 330-421 361-456 (872)
483 PHA02537 M terminase endonucle 35.0 3E+02 0.0066 23.9 11.6 22 82-103 94-115 (230)
484 KOG4567 GTPase-activating prot 34.6 3E+02 0.0064 25.1 8.0 44 343-386 263-306 (370)
485 PF04910 Tcf25: Transcriptiona 34.4 4E+02 0.0087 25.1 20.8 116 265-385 22-166 (360)
486 PF04090 RNA_pol_I_TF: RNA pol 34.4 2.7E+02 0.0058 23.5 7.5 64 428-491 41-104 (199)
487 PRK13342 recombination factor 34.3 4.3E+02 0.0094 25.4 19.9 21 372-392 244-264 (413)
488 KOG1498 26S proteasome regulat 34.1 4.1E+02 0.0089 25.1 17.1 89 362-457 135-241 (439)
489 KOG2062 26S proteasome regulat 33.8 5.7E+02 0.012 26.7 24.9 388 87-500 39-465 (929)
490 KOG0551 Hsp90 co-chaperone CNS 33.4 3.9E+02 0.0085 24.7 8.8 98 358-456 81-181 (390)
491 KOG0551 Hsp90 co-chaperone CNS 33.0 3.9E+02 0.0085 24.7 8.6 98 323-421 81-181 (390)
492 PRK06645 DNA polymerase III su 32.6 5.2E+02 0.011 25.8 11.6 85 374-461 189-290 (507)
493 COG2178 Predicted RNA-binding 32.4 3E+02 0.0065 23.1 10.5 16 475-490 133-148 (204)
494 KOG4279 Serine/threonine prote 32.3 6E+02 0.013 26.5 13.2 114 271-387 181-316 (1226)
495 KOG1114 Tripeptidyl peptidase 32.2 6.8E+02 0.015 27.1 14.6 81 409-490 1212-1293(1304)
496 PF08311 Mad3_BUB1_I: Mad3/BUB 32.0 2.4E+02 0.0051 21.7 10.8 44 306-349 81-125 (126)
497 PF14561 TPR_20: Tetratricopep 31.9 1.9E+02 0.0041 20.6 9.5 34 209-242 19-52 (90)
498 PRK14958 DNA polymerase III su 31.4 5.4E+02 0.012 25.7 12.5 86 374-462 180-279 (509)
499 KOG2297 Predicted translation 31.2 4.1E+02 0.0089 24.2 15.9 69 265-343 267-341 (412)
500 PF14669 Asp_Glu_race_2: Putat 31.0 3.2E+02 0.007 22.9 15.3 25 293-317 137-161 (233)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-65 Score=515.47 Aligned_cols=415 Identities=21% Similarity=0.335 Sum_probs=404.0
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
+.|++++|+++|++|.+.+..+++...++.++..|.+.|.+++|..+|+.|.. ||..+|+.++.+|++.|+++.|.
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHH
Confidence 45899999999999999887667888888999999999999999999999974 89999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|+++|++|...+
T Consensus 458 ~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 458 RVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh--CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKD--ENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 538 ------v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 538 ------VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999999976 578999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044044 321 PDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLI 400 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (508)
|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVL 480 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 480 (508)
.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHcc
Q 044044 481 EALELFRAIRDSKYELNIVSYNCLIDG 507 (508)
Q Consensus 481 ~A~~~~~~m~~~g~~p~~~~~~~ll~~ 507 (508)
+|.+++++|.+.|+.||..+|++|+..
T Consensus 772 ~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 772 VGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999864
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-64 Score=512.07 Aligned_cols=416 Identities=23% Similarity=0.356 Sum_probs=397.9
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|.+++|+.+|+.+.. |+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 418 ~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~ 492 (1060)
T PLN03218 418 KQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492 (1060)
T ss_pred HCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 45789999999988853 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|...+
T Consensus 493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~ 572 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998632
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 322 (508)
.. +.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 573 ~g----i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 573 HP----IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred CC----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 10 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c--
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK----S-- 476 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-- 476 (508)
|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ +
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~ 808 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA 808 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCccCHHHHHHHHcc
Q 044044 477 -----------------GFVLEALELFRAIRDSKYELNIVSYNCLIDG 507 (508)
Q Consensus 477 -----------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 507 (508)
+..++|..+|++|++.|+.||..||+.+|.+
T Consensus 809 l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 809 LGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred hhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 2246799999999999999999999999954
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.8e-61 Score=485.84 Aligned_cols=405 Identities=21% Similarity=0.321 Sum_probs=390.0
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|++++|+++|+++...++..|+..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.++..|++.|+++.|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 45789999999999998776668999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
++|++|. .||..+|+.++.+|++.|++++|+++|++|...|..|+..+|+.++.++.+.|+.+.+.+++..+.+.+
T Consensus 179 ~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 179 RLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred HHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 9999996 479999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 322 (508)
..+|..+|+.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 255 ------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 255 ------VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred ------CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 889999999999999999999999999999964 4889999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|+++|++++|.++|++|.+ ||..+||.+|.+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~ 400 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG 400 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999964 789999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR-NHVAADTYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~ 481 (508)
|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999999999999999986 5999999999999999999999999
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHccC
Q 044044 482 ALELFRAIRDSKYELNIVSYNCLIDGL 508 (508)
Q Consensus 482 A~~~~~~m~~~g~~p~~~~~~~ll~~~ 508 (508)
|.+++++| ++.|+..+|++||++|
T Consensus 481 A~~~~~~~---~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 481 AYAMIRRA---PFKPTVNMWAALLTAC 504 (697)
T ss_pred HHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 99998876 6899999999999886
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-58 Score=478.75 Aligned_cols=405 Identities=20% Similarity=0.298 Sum_probs=346.3
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
+.+.|++++|..+|+++. . ++..+||.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.
T Consensus 232 y~k~g~~~~A~~lf~~m~----~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMP----R-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HhcCCCHHHHHHHHhcCC----C-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 457799999999999984 3 68889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|+++|++|..
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 57889999999999999999999999999988
Q ss_pred CCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 044044 241 GNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--- 317 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 317 (508)
.+ +.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 383 ~g------~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 383 DN------VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred hC------CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 87 778888888888888888888888887777777777777777777777777777766666666665431
Q ss_pred ---------------------------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 318 ---------------------------GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 318 ---------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+.+|++
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 24555555555555555555555555555555555666666666667777777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKL 450 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 450 (508)
+|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++
T Consensus 537 ~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 537 CGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred cCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 77777777777766 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHHccC
Q 044044 451 FDEMR-RNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508 (508)
Q Consensus 451 ~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 508 (508)
|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++| +++||..+|++||.+|
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNAC 667 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 99999 6799999999999999999999999999999998 4899999999999886
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.1e-58 Score=473.51 Aligned_cols=410 Identities=25% Similarity=0.381 Sum_probs=299.2
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
+.+.|+++.|+++|+++. . |+..+|+.++.+|.+.|++++|+++|++|...|+.||..+|+.++++|+..++++.
T Consensus 131 ~~~~g~~~~A~~~f~~m~----~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMP----E-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHhCCChHHHHHHHhcCC----C-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 356789999999999884 2 68999999999999999999999999999999999999999888888877777777
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
+.+++..+.+.|+.|+..+++.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|+++|++|..
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777766665 34566666666666666666666666666665
Q ss_pred CCCCCC-----------------------------ccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhH
Q 044044 241 GNGEFG-----------------------------VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTY 291 (508)
Q Consensus 241 ~~~~~~-----------------------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 291 (508)
.+.... ....||..+|+.++.+|++.|++++|.++|++|.. ||..+|
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~ 357 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSW 357 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeH
Confidence 540000 00344555555555555555555555555555532 355566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC
Q 044044 292 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT 371 (508)
Q Consensus 292 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (508)
+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 66666666666666667777777666777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------------------
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKP------------------------- 426 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------------------------- 426 (508)
|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.|
T Consensus 438 g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 438 KCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 777777777777653 4556666666666666666666666666653 2344
Q ss_pred ----------------------------------------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044044 427 ----------------------------------------TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTY 466 (508)
Q Consensus 427 ----------------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (508)
|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 4455677777788888888888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-HcCCccCHHHHHHHHccC
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIR-DSKYELNIVSYNCLIDGL 508 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~ 508 (508)
+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++|+++|
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 888888888888888888888888 678888888888888754
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-56 Score=449.66 Aligned_cols=389 Identities=17% Similarity=0.270 Sum_probs=195.3
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
+.|+++.|.++|+++. . |+..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.
T Consensus 170 k~g~~~~A~~lf~~m~----~-~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 170 KCGMLIDARRLFDEMP----E-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred cCCCHHHHHHHHhcCC----C-CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 3444444444444442 1 3444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|. ++|..+|+.++.+|++.|++++|+++|++|...+
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 444444444444455555555555555555555555555543 2345555555555555555555555555555444
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 322 (508)
+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||
T Consensus 321 ------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d 390 (697)
T PLN03081 321 ------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KN 390 (697)
T ss_pred ------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 44555555555555555555555555555555555555555555555555555555555555555432 34
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMES-NGCMHDVVSYNTLIN 401 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~ 401 (508)
..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 4555555555555555555555555555555555555555555555555555555555555543 344555555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 402 WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 481 (508)
+|++.|++++|.+++++| +..|+..+|+.|+.+|...|+++.|..+++++.+.+ +.+..+|..++..|++.|++++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHH
Confidence 555555555555554433 234455555555555555555555555555544321 1123455555555555555555
Q ss_pred HHHHHHHHHHcCC
Q 044044 482 ALELFRAIRDSKY 494 (508)
Q Consensus 482 A~~~~~~m~~~g~ 494 (508)
|.+++++|.+.|+
T Consensus 547 A~~v~~~m~~~g~ 559 (697)
T PLN03081 547 AAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHHHcCC
Confidence 5555555555554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.3e-28 Score=257.78 Aligned_cols=405 Identities=14% Similarity=0.087 Sum_probs=270.8
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
+...|++++|...|+++++..|. +...+..++..+...|++++|.+.|+++.+.+ +.+...+..+...+.+.|+.++
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPD--FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 34455666666666666655554 44555556666666666666666666665543 3345556666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
|...++++...+ +.+...+..++..+...|++++|..+++++.... +.+...|..++.++...|++++|+..|+++..
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666665543 3344555566666666667777777666665543 34556667777777777777777777777666
Q ss_pred CCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 241 GNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
.. +.+...+..+..++...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++.+.+.+ +
T Consensus 630 ~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 630 LQ-------PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred hC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 43 3345566667777777777777777777766542 3345666677777777777777777777776653 4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044044 321 PDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLI 400 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (508)
.+...+..+...+...|++++|...++.+...+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..++
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 455666667777777777777777777777653 344566667777777888888888777777664 55677777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVL 480 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 480 (508)
..|...|++++|...|+++.+..+ .+..++..++..+...|+ .+|+.+++++.+.. +.+..++..+...+.+.|+++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 888888888888888888877643 466777778888888888 77888888777652 335566777777888888888
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHc
Q 044044 481 EALELFRAIRDSKYELNIVSYNCLID 506 (508)
Q Consensus 481 ~A~~~~~~m~~~g~~p~~~~~~~ll~ 506 (508)
+|.++|+++++.+.. +..++..+..
T Consensus 855 ~A~~~~~~a~~~~~~-~~~~~~~l~~ 879 (899)
T TIGR02917 855 RALPLLRKAVNIAPE-AAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHHHhhCCC-ChHHHHHHHH
Confidence 888888888876533 5566555543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.2e-28 Score=257.02 Aligned_cols=391 Identities=15% Similarity=0.152 Sum_probs=349.9
Q ss_pred CCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 044044 80 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (508)
.+...|++++|...|+.+.+..|. +..++..+...+.+.|++++|..+++++.+.+ +.+...+..++..+.+.|+++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPK--NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 345678999999999999998887 88899999999999999999999999998765 556778888999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMA 239 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 239 (508)
+|..+++.+.+.. +.+...|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|..+|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998764 5578899999999999999999999999998764 4467789999999999999999999999999
Q ss_pred hCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044044 240 NGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV 319 (508)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 319 (508)
... +.+...+..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...|+++...+
T Consensus 663 ~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 733 (899)
T TIGR02917 663 ELK-------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA- 733 (899)
T ss_pred hcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 864 5568899999999999999999999999998874 4467788889999999999999999999999874
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044044 320 QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTL 399 (508)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (508)
|+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+.. +.+...++.+
T Consensus 734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455777888999999999999999999999874 4478899999999999999999999999999876 6788999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 400 INWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 479 (508)
+..+...|+ .+|+.+++++.+... -+..++..+...+...|++++|.++++++.+.+.. +..++..++.++.+.|++
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCH
Confidence 999999999 889999999998743 35667888999999999999999999999998654 899999999999999999
Q ss_pred HHHHHHHHHHH
Q 044044 480 LEALELFRAIR 490 (508)
Q Consensus 480 ~~A~~~~~~m~ 490 (508)
++|.+++++|+
T Consensus 888 ~~A~~~~~~~~ 898 (899)
T TIGR02917 888 AEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=6.6e-24 Score=192.62 Aligned_cols=387 Identities=16% Similarity=0.159 Sum_probs=307.5
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHH
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLG 166 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 166 (508)
++.....-....+..|. -.++|..+...+-..|++++|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.
T Consensus 98 ~d~s~a~~~~a~r~~~q--~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 98 LDKSSAGSLLAIRKNPQ--GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred hhhhhhhhhhhhhccch--HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 33333333334444443 55788889999999999999999999998863 3457788899999999999999999999
Q ss_pred HHHhCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 044044 167 RILRSCFTPNAVT-FTSLIKGLCAESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 244 (508)
Q Consensus 167 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 244 (508)
..++. .|+... ...+...+...|++++|...|.+..+. .|. ..+|..|...+-.+|+...|+..|++....++
T Consensus 175 ~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP- 249 (966)
T KOG4626|consen 175 EALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP- 249 (966)
T ss_pred HHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-
Confidence 88876 344443 344555566679999999998888776 333 56789999999999999999999999988652
Q ss_pred CCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H
Q 044044 245 FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD-V 323 (508)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 323 (508)
.-...|..|...|...+.+++|...|.+..... +...+.+..+...|...|+.+-|+..|++.++. .|+ .
T Consensus 250 ------~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~ 320 (966)
T KOG4626|consen 250 ------NFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFP 320 (966)
T ss_pred ------cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCch
Confidence 236688889999999999999999999887752 224677888888888999999999999998886 343 5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..|+.+..++-..|++.+|.+.+...+... +......+.|..+|...|.+++|..+|....+-. +.-....+.|...|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIY 398 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHH
Confidence 689999999999999999999999988763 2247788889999999999999999999888763 33456788899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKPT-VVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD-TYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 481 (508)
-+.|++++|+..|++.++. +|+ ...|+.+...|-..|+.+.|++.+.+.+.. .|. ....+.|...|..+|+..+
T Consensus 399 kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999999884 555 457888999999999999999999988875 343 4567888899999999999
Q ss_pred HHHHHHHHHHcCCccCH
Q 044044 482 ALELFRAIRDSKYELNI 498 (508)
Q Consensus 482 A~~~~~~m~~~g~~p~~ 498 (508)
|+.-|++.+. ++||.
T Consensus 475 AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHHc--cCCCC
Confidence 9999999885 45553
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.6e-22 Score=215.05 Aligned_cols=399 Identities=12% Similarity=0.050 Sum_probs=275.9
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhH-----------
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFP-DIYTH----------- 145 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~----------- 145 (508)
|..+...|++++|+..|+++++..|. +..++..+..++.+.|++++|+..|++..+..... ....|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 44566789999999999999999887 88899999999999999999999999998764211 11112
Q ss_pred -HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHH--
Q 044044 146 -SILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGL-- 222 (508)
Q Consensus 146 -~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-- 222 (508)
......+.+.|++++|+..++++++.. +.+...+..+...+...|++++|++.|+++.... +.+...+..+...+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 122456778999999999999999874 3466778888999999999999999999988764 23444554444443
Q ss_pred ----------------------------------------HhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHH
Q 044044 223 ----------------------------------------CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDG 262 (508)
Q Consensus 223 ----------------------------------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (508)
...|++++|++.|++..+.. +.+...+..+...
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~~~~~LA~~ 504 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSVWLTYRLAQD 504 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 33455555555555555432 2233444445555
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------hHHHHHHHH
Q 044044 263 LCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV---------TFSVIMDEL 333 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~ 333 (508)
|.+.|++++|...++++.+.. +.+...+..+...+...+++++|+..++.+......++.. .+......+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 555555555555555554431 1122223233333344455555555554432211111110 112234456
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044044 334 CKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEAL 413 (508)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (508)
...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|+++.+.. +.+...+..++..+...|++++|+
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 667777777776651 23456677788899999999999999999999875 667888999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 414 SLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHV--AA---DTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
+.++.+.+... .+..++..+..++...|++++|.++++++..... +| +...+..+...+...|++++|+..|++
T Consensus 658 ~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 658 AQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998877532 2556677788899999999999999999987532 22 234666678889999999999999999
Q ss_pred HH-HcCCc
Q 044044 489 IR-DSKYE 495 (508)
Q Consensus 489 m~-~~g~~ 495 (508)
.+ ..|+.
T Consensus 737 Al~~~~~~ 744 (1157)
T PRK11447 737 AMVASGIT 744 (1157)
T ss_pred HHhhcCCC
Confidence 86 34444
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=6.7e-23 Score=186.16 Aligned_cols=374 Identities=15% Similarity=0.126 Sum_probs=317.5
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcC
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTH-SILINCFCKMG 156 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g 156 (508)
+..+-..|++++|+.+++.+++..|. ...+|..+..++...|+.+.|.+.|.+.++. .|+.... ..+...+...|
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhc
Confidence 34445678999999999999999988 8999999999999999999999999999985 5765544 44556677789
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHHHHH
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVALNLF 235 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 235 (508)
++.+|...+.+.++.. +--...|..|...+...|+...|+..|++..+. .|+ ...|..|...|...+.+++|+..|
T Consensus 199 rl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred ccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 9999999999998763 234668999999999999999999999999876 454 678999999999999999999999
Q ss_pred HHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 236 EEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 315 (508)
.+..... +-....+..+...|...|..|-|+..|++..+.... -...|+.|..++...|++.+|.+.|.+.+
T Consensus 276 ~rAl~lr-------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 276 LRALNLR-------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHhcC-------CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9988853 345778889999999999999999999999886322 36789999999999999999999999998
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 044044 316 DQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVV 394 (508)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 394 (508)
... +......+.+...+...|.+++|..+|....+- .|. ....+.|...|-++|++++|...+++.++.. +.-..
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAd 423 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFAD 423 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHH
Confidence 863 345668889999999999999999999998865 444 6678899999999999999999999998864 33467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD-TYTYNNFIDGL 473 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 473 (508)
.|+.+...|-..|+.+.|++.+.+++..++. -...++.|...|-..|++.+|++-+++..+. .|| ...|..++.++
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 8999999999999999999999999986422 3567899999999999999999999999985 454 34555555544
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.1e-20 Score=189.12 Aligned_cols=405 Identities=12% Similarity=-0.001 Sum_probs=299.2
Q ss_pred hhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 74 CKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
....|..++..|+++.|+..|+++++..|. ...|..+..+|.+.|++++|++.++..++.. +.+...|..+..++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD---PVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 456677788899999999999999988764 5678899999999999999999999999864 446778999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc---------------------------
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF--------------------------- 206 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------- 206 (508)
..|++++|+..+..+...+...+.. ...++..+........+...++.-...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999998887665442111211 111111111110111111111110000
Q ss_pred CCCCC-HhhHHHHHHHH---HhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 207 ACEPD-VFTYNTLINGL---CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 207 ~~~~~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
...+. ...+..+...+ ...+++++|++.|+.....+.. .+.+...|..+...+...|++++|...|++..+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~----~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL----GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 00000 00111111111 2246899999999999876420 1334567888899999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHH
Q 044044 283 NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYN 362 (508)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (508)
. +.....|..+...+...|++++|+..|+++.+.. +.+...|..+...+...|++++|...|++.++.. +.+...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHH
Confidence 3 2245678888899999999999999999998863 4567889999999999999999999999999874 23577788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh------HHHHHHH
Q 044044 363 TLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV------TYNTLFL 436 (508)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~ 436 (508)
.+..++.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|++.|++.++.....+.. .++....
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 88899999999999999999998764 5678899999999999999999999999998864321111 1122223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 437 GLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
.+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|++.|++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444699999999999998864 235567889999999999999999999998754
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=3.5e-22 Score=190.04 Aligned_cols=303 Identities=17% Similarity=0.139 Sum_probs=193.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 186 GLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
.+...|++++|+..|.++...+ +.+..++..+...+...|++++|..+++.+....... .......+..++..|.+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT---REQRLLALQELGQDYLK 119 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHHHHH
Confidence 3445566667777777666653 2344566666666677777777777777666542100 00012355666667777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCChhH
Q 044044 266 EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDV----VTFSVIMDELCKNGKMDK 341 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 341 (508)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777776542 234556666777777777777777777776664322211 133445556677777777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 342 ASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777653 2235566667777777777777777777777653222234567777777777788888777777776
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCccCH
Q 044044 422 KGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK---SGFVLEALELFRAIRDSKYELNI 498 (508)
Q Consensus 422 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 498 (508)
. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.++++|.+.++.|+.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 5 345555577777777777888888877777764 4677777766666554 45777777777777776665554
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=5.5e-22 Score=188.69 Aligned_cols=303 Identities=14% Similarity=0.084 Sum_probs=165.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhc
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPN---AVTFTSLIKGLCAE 190 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 190 (508)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556677777777777777653 33445666666667777777777777776665421111 23455666666666
Q ss_pred CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC---HhHHHHHHHHHHccC
Q 044044 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN---TVTYNTIIDGLCKEG 267 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 267 (508)
|++++|..+|+++.... +.+..++..++..+.+.|++++|++.++.+...++ ..+. ...+..++..+.+.|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-----DSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHHhCC
Confidence 66666666666666542 33455666666666666666666666666665431 0111 112344555555666
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLE 347 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 347 (508)
++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665532 223344555555566666666666666665543211112344555555555555555555555
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 044044 348 LMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK---NKDVEEALSLYSEMLSKGI 424 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 424 (508)
.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 55544 233334455555555555555555555555544 3455555555444442 3355555555555555444
Q ss_pred CCCH
Q 044044 425 KPTV 428 (508)
Q Consensus 425 ~p~~ 428 (508)
.|++
T Consensus 350 ~~~p 353 (389)
T PRK11788 350 KRKP 353 (389)
T ss_pred hCCC
Confidence 4333
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2.1e-20 Score=186.34 Aligned_cols=325 Identities=11% Similarity=0.038 Sum_probs=170.3
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHG 161 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 161 (508)
+..|++++|+.+++.++...|. +...+..++.++...|++++|+..|+++.+.. +.+...+..+...+...|++++|
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 4456666666666666666555 44445555555555666666666666665542 33444555555556666666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 162 FVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
...++++++.. +.+...+..++..+...|++++|...++++.... +.+...+..+ ..+...|++++|+..++.+...
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 66666655542 2344455555555666666666666665554432 1122222222 2345556666666666655544
Q ss_pred CCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHc
Q 044044 242 NGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNE----AKRLFIEMMDQ 317 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~ 317 (508)
. ..++...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++ |...|++..+.
T Consensus 207 ~------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 207 F------ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred C------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 3 12223333344455555666666666666655542 2234455555555556666553 55555555554
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 318 GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
. +.+...+..+...+.+.|++++|...++++.+... .+...+..+..++.+.|++++|...++++.+.+ +.+...+.
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~ 356 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNR 356 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 2 23344555555556666666666666665555421 134444555555556666666666665555542 11222233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.+..++...|+.++|+..|+++.+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344555566666666666655554
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=3.2e-20 Score=197.62 Aligned_cols=394 Identities=11% Similarity=0.037 Sum_probs=286.7
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC------------------C------
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGL------------------F------ 139 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~------ 139 (508)
.|+.++|+..++++.+.+|. +...+..+...+...|++++|+..++++.+... .
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~--~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPG--NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 47889999999999998887 778888999999999999999999998754320 0
Q ss_pred --------CCHHhH---------------------HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 140 --------PDIYTH---------------------SILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190 (508)
Q Consensus 140 --------~~~~~~---------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (508)
|+.... ......+...|++++|+..|+++++.. +.+...+..+...+.+.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 100000 011344567899999999999998864 34778888999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCC-CHhhH------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHH
Q 044044 191 SRIMEAAALFTKHRVFACEP-DVFTY------------NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN 257 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
|++++|+..|++..+..... +...| ......+.+.|++++|+..|+++.... +.+...+.
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~a~~ 389 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-------NTDSYAVL 389 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHH
Confidence 99999999999988764221 11112 123456778999999999999999875 45667788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHH------------------------------------------H
Q 044044 258 TIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSV------------------------------------------I 295 (508)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------------~ 295 (508)
.+..++...|++++|++.|+++.+... .+...+..+ .
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 899999999999999999999887532 123233222 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHH
Q 044044 296 RGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKID 375 (508)
Q Consensus 296 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (508)
..+...|++++|++.|++.++.. +-+...+..+...|.+.|++++|...++++++.... +...+..+...+...++.+
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHH
Confidence 33446788888988888888763 335567777888899999999999999988765322 3333333333333344444
Q ss_pred HHHHHHHHHHhC---------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 376 HARKLFVSMESN---------------------------------------GCMHDVVSYNTLINWYCKNKDVEEALSLY 416 (508)
Q Consensus 376 ~A~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (508)
+|...++.+... ..+.+...+..+...+.+.|++++|+..|
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 444433322100 12455666777888899999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 417 SEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 417 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
+++++..+. +...+..++..+...|++++|++.++.+.+.. +.+...+..+..++...|++++|.+++++++..
T Consensus 627 ~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 627 QRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999987433 67788899999999999999999999887652 235566777888899999999999999999864
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.3e-20 Score=187.77 Aligned_cols=368 Identities=9% Similarity=-0.010 Sum_probs=256.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG 186 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (508)
..-...++..+.+.|++++|..+++...... +-+...+..++.+....|+++.|...++++.... +.+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3344556666778888888888888887763 3345556666677777888888888888887763 3456677777888
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHcc
Q 044044 187 LCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKE 266 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (508)
+...|++++|+..++++.... +.+...+..++..+...|++++|...++.+.... +.+...+..+ ..+...
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-------P~~~~a~~~~-~~l~~~ 190 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-------PPRGDMIATC-LSFLNK 190 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------CCCHHHHHHH-HHHHHc
Confidence 888888888888888887763 3356677788888888888888888888776654 2233333333 346778
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhH----H
Q 044044 267 GFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDK----A 342 (508)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a 342 (508)
|++++|...++.+.+....++...+..+...+.+.|++++|+..++++.+.. +.+...+..+...+...|++++ |
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 8888888888887665333344444555667778888888888888888763 4456677778888888888875 7
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 343 SRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|+..++++.+.
T Consensus 270 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 270 AEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888887663 2256777888888888888888888888887764 445667777788888888888888888888775
Q ss_pred CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 423 GIKPTV-VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTY----TYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 423 ~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+ |+. ..+..+..++...|+.++|+..|+++.+....--.. ....+-.++...+..++......++.
T Consensus 348 ~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 348 K--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred C--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 3 333 334445667788888888888888877653221122 22333344445555555545555554
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.3e-19 Score=184.54 Aligned_cols=396 Identities=11% Similarity=0.022 Sum_probs=303.2
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
.|+.++|++++..+....|. +...+..+...+...|++++|..++++..+.. +.+...+..+..++...|++++|+.
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~--~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQL--PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47999999999999875554 66679999999999999999999999998863 4567778888899999999999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
.++++++.. +.+.. +..+...+...|+.++|+..++++.... +.+...+..+...+...|..++|+..++.+.. .
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~- 179 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T- 179 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C-
Confidence 999998873 44566 8888999999999999999999999874 34566777788888899999999999987664 1
Q ss_pred CCCccccCCH------hHHHHHHHHHH-----ccCCH---HHHHHHHHHHhhC-CCCCChh-hHH----HHHHHHHhcCC
Q 044044 244 EFGVVCKPNT------VTYNTIIDGLC-----KEGFV---DKAKELFLKMKDE-NINPDVV-TYT----SVIRGFCYAND 303 (508)
Q Consensus 244 ~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~ 303 (508)
|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|+
T Consensus 180 -------p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 180 -------PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred -------HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 111 11222222222 22334 7788888888754 2222221 111 11334567799
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHhHHHHHHHHHcCCCHHHHHH
Q 044044 304 WNEAKRLFIEMMDQGVQ-PDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNP---NTYTYNTLIDGYCLTDKIDHARK 379 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~ 379 (508)
+++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++++|..
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999987532 332 22235778999999999999999988653221 13456667778899999999999
Q ss_pred HHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 044044 380 LFVSMESNGC-----------MHD---VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVE 445 (508)
Q Consensus 380 ~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (508)
+++.+.+... .|+ ...+..+...+...|++++|+++++++.... +.+...+..++..+...|+++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 9999987631 122 2345667788999999999999999999874 336788899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHH
Q 044044 446 RALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 446 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
+|++.+++..+.. +.+...+..++..+.+.|++++|..+++++++. .|+..
T Consensus 411 ~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 411 AAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred HHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 9999999999864 335667777888899999999999999999964 45543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2.3e-18 Score=172.34 Aligned_cols=382 Identities=11% Similarity=0.005 Sum_probs=275.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC 188 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (508)
.+...+..+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|+..++.+++.. +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556778889999999999999999875 6788889999999999999999999999998874 346778888999999
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---------------------C-
Q 044044 189 AESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF---------------------G- 246 (508)
Q Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------------~- 246 (508)
..|++++|+..|......+...+.. ...++..+.. ..+.............. +
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 9999999999887765543121211 1111111111 11111111111111000 0
Q ss_pred ---ccccCC-HhHHHHHHHH---HHccCCHHHHHHHHHHHhhCC-C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 247 ---VVCKPN-TVTYNTIIDG---LCKEGFVDKAKELFLKMKDEN-I-NPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 247 ---~~~~~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
....++ ...+..+... ....+++++|.+.|++..+.+ . +.....+..+...+...|++++|+..+++.++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 000000 0011111111 123468999999999998764 2 224567888888889999999999999999886
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 318 GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
. +.+...|..+...+...|++++|...++.+++.. +.+..+|..+...+...|++++|...|++..+.. +.+...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHH
Confidence 3 3345688888899999999999999999998774 3357889999999999999999999999999875 55778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTY------TYNNFID 471 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~ 471 (508)
.+..++.+.|++++|+..|++.++.. +.+...++.+...+...|++++|++.|++..+.....+.. .++..+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 89999999999999999999998863 3357788999999999999999999999998753221111 1222233
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCccCHH-HHHHH
Q 044044 472 GLCKSGFVLEALELFRAIRDSKYELNIV-SYNCL 504 (508)
Q Consensus 472 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 504 (508)
.+...|++++|.+++++.+.. .|+.. .+..+
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~l 548 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALII--DPECDIAVATM 548 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 344579999999999998864 45443 34433
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=4.6e-18 Score=173.32 Aligned_cols=386 Identities=10% Similarity=0.009 Sum_probs=290.3
Q ss_pred HHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 044044 92 CIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRS 171 (508)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 171 (508)
..++. .+.++. +.....-.+.+....|+.++|++++++..... +.+...+..+..++...|++++|.+++++.++.
T Consensus 3 ~~~~~-~~~~~~--~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 3 SWLRQ-ALKSAL--SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred hhhhh-hhccCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444 333343 55555666777789999999999999998632 556667999999999999999999999999876
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccC
Q 044044 172 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 251 (508)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (508)
. +.+...+..++..+...|++++|+..++++.... +.+.. +..+..++...|++++|+..++++.+.. +.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-------P~ 148 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-------PQ 148 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CC
Confidence 3 4457778888899999999999999999998874 44566 8889999999999999999999999975 44
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc
Q 044044 252 NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV------VTYTSVIRGFC-----YANDW---NEAKRLFIEMMDQ 317 (508)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~ 317 (508)
+...+..+..++...|..++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 666777788888899999999999987664 2221 11222222222 22334 7788889888864
Q ss_pred -CCCCCHH-hH----HHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 044044 318 -GVQPDVV-TF----SVIMDELCKNGKMDKASRLLELMIWRGVN-PNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCM 390 (508)
Q Consensus 318 -~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 390 (508)
...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.+....
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 2223221 11 11134556779999999999999987532 332 2223577899999999999999998875311
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HhHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 391 H---DVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI-----------KPT---VVTYNTLFLGLFEIHQVERALKLFDE 453 (508)
Q Consensus 391 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (508)
. .......+..++...|++++|..+++++.+... .|+ ...+..+...+...|+.++|++++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 134566677788999999999999999987531 123 23456778889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCH
Q 044044 454 MRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNI 498 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 498 (508)
+... .+.+...+..+...+...|++++|++.+++.+. +.|+.
T Consensus 385 al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~ 426 (765)
T PRK10049 385 LAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRN 426 (765)
T ss_pred HHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCC
Confidence 9886 355688899999999999999999999999986 45765
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=4.5e-17 Score=162.95 Aligned_cols=394 Identities=11% Similarity=0.027 Sum_probs=272.4
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
+.|+++.|+..|+++++..|. +......++..+...|+.++|+..+++..... .........+...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~--~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPL--QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCcc--chhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 568899999999999998877 43222277788888899999999999988321 233444444466888889999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
++++++++.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999998875 335667777888888999999999999998876 4555555555555555667766999999998875
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHH-----------------------------------------------
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKEL----------------------------------------------- 275 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----------------------------------------------- 275 (508)
+.+...+..+..+..+.|-...|.++
T Consensus 200 -------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 200 -------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred -------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 33455555555555444443333333
Q ss_pred -HHHHhhC-CCCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 044044 276 -FLKMKDE-NINPDV-VTY----TSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLEL 348 (508)
Q Consensus 276 -~~~~~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 348 (508)
++.+... +..|.. ..| .-.+-++...|+..++++.|+.+...+.+....+-..+..+|...+++++|..++..
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3333221 111211 111 123445667788888888888888777654556777788888888888888888888
Q ss_pred HHHcCC-----CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-----------CCC--H-HHHHHHHHHHHhcCCH
Q 044044 349 MIWRGV-----NPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGC-----------MHD--V-VSYNTLINWYCKNKDV 409 (508)
Q Consensus 349 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~--~-~~~~~l~~~~~~~g~~ 409 (508)
+..... .++......|.-+|...+++++|..+++.+.+... .|| - ..+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 766431 22333456777888888888888888888876311 111 1 1234456667788888
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 410 EEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
.+|++.++++....+ -|......+...+...|.+.+|++.++..... -+-+..+....+.++...|++++|..+.+.+
T Consensus 433 ~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 433 PTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 888888888877643 37778888888888888888888888666654 2335566667777788888888888888777
Q ss_pred HH
Q 044044 490 RD 491 (508)
Q Consensus 490 ~~ 491 (508)
.+
T Consensus 511 ~~ 512 (822)
T PRK14574 511 IS 512 (822)
T ss_pred Hh
Confidence 64
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.5e-18 Score=162.36 Aligned_cols=423 Identities=14% Similarity=0.083 Sum_probs=324.0
Q ss_pred HHHhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 044044 71 KERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILIN 150 (508)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 150 (508)
.+.+...|+.++..|++++|..+|-+..+..+. ..+..+-.++..+.+.|+++.+...|+...+.. +.+..+...|..
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d-~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADND-NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC-CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 334666788899999999999999999998877 236677788999999999999999999998863 445666677777
Q ss_pred HHHhcC----CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh----hcCCCCCHhhHHHHHHHH
Q 044044 151 CFCKMG----RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHR----VFACEPDVFTYNTLINGL 222 (508)
Q Consensus 151 ~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~ 222 (508)
.|...+ ..+.|..++.+.++.. +.|...|-.+...+-.. +...++.+|..+. ..+..+.....|.+...+
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 776664 5677888888877663 55777888887777654 4444477665543 445567889999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCC-----CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHH
Q 044044 223 CRTGHTIVALNLFEEMANGNG-----EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD-VVTYTSVIR 296 (508)
Q Consensus 223 ~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 296 (508)
...|++++|...|+.....-. +.+ -.+++.+-..+....-..++++.|.+.|..+.+. .|. +..|..+..
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~--~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEG--KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCcccc--ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 999999999999999887611 000 1233334455677777888999999999999886 233 334444443
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHc-----
Q 044044 297 GFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG-VNPNTYTYNTLIDGYCL----- 370 (508)
Q Consensus 297 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----- 370 (508)
.....+...+|...+.+..... ..+...+..+...+.+...+..|.+-|..+.+.- ..+|..+.-.|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 3344578899999999988753 4466677777878999889988888777666543 23577777777776553
Q ss_pred -------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 044044 371 -------TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 371 -------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (508)
.+..++|.++|.++++.. +.|...-|.++-+++..|++.+|..+|.+..+... -...+|..+.++|..+|+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHH
Confidence 234788999999999876 67888889999999999999999999999998743 256678899999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHH
Q 044044 444 VERALKLFDEMRRN-HVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCL 504 (508)
Q Consensus 444 ~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 504 (508)
+..|+++|+...+. ....+..+...|.+++.+.|.+.+|.+.+...+.....-..+.||..
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 99999999887654 55667888999999999999999999999888876554455666654
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=3.4e-16 Score=159.93 Aligned_cols=186 Identities=15% Similarity=0.057 Sum_probs=114.7
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|++++|+..|+.+++..|. +..++..+...|.+.|++++|+..+++..+. .|+...|..++..+ +++++|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~--n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD--NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 447999999999999999988 7888899999999999999999999999886 45444444433222 8888898
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHH--------HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHH-HHHHHhcCChHHHHH
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKG--------LCAESRIMEAAALFTKHRVFACEPDVFTYNTL-INGLCRTGHTIVALN 233 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 233 (508)
.+++++.... +-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9998888763 2234444444433 4333 33333333 2222222233333333 566666666666666
Q ss_pred HHHHHHhCCCCCC------------------------ccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 044044 234 LFEEMANGNGEFG------------------------VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK 280 (508)
Q Consensus 234 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (508)
++.++.+.+.... ...+.+...+..++..+.+.|+.++|.++++++.
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 6665555432110 0012344555566666777777777776666553
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.7e-15 Score=151.73 Aligned_cols=369 Identities=14% Similarity=0.070 Sum_probs=274.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDI--YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 191 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (508)
+-...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++.... .+........+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 33457899999999999999986 4553 234 8888888999999999999998821 1223334444467888999
Q ss_pred CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHH
Q 044044 192 RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDK 271 (508)
Q Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (508)
++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.... |+...+..++..+...++..+
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------p~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--------PTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------cchHHHHHHHHHHHhcchHHH
Confidence 9999999999999875 3357777788899999999999999999998865 555556555555555677767
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH-----------------------------------------
Q 044044 272 AKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRL----------------------------------------- 310 (508)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----------------------------------------- 310 (508)
|++.++++.+.. +.+...+..+..+..+.|-...|.++
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999999999873 22455555555555554443333333
Q ss_pred -------HHHHHHc-CCCCC-HHh----HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHH
Q 044044 311 -------FIEMMDQ-GVQPD-VVT----FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHA 377 (508)
Q Consensus 311 -------~~~~~~~-~~~~~-~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 377 (508)
++.+... +..|. ... ..-.+-++...|++.++++.++.+...+.+....+-..+..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 2332221 11122 111 1233457788899999999999999888665667888999999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---hHHHHHHHHH
Q 044044 378 RKLFVSMESNG-----CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI-----------KPTV---VTYNTLFLGL 438 (508)
Q Consensus 378 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~ 438 (508)
..+++++.... .+++......|..+|...+++++|..+++++.+..+ .||. ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999987653 123444467889999999999999999999987421 1222 2334567788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHH
Q 044044 439 FEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
...|+..+|++.++++... -+-|......+.+.+...|.+.+|.+.++.... +.|+..
T Consensus 427 ~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~ 484 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSL 484 (822)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccH
Confidence 8999999999999999876 456899999999999999999999999977764 466643
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.2e-15 Score=133.62 Aligned_cols=373 Identities=13% Similarity=0.140 Sum_probs=273.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 185 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (508)
...++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.- ....+++.+|......||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 7789999999999999999999999999887778999999999977543 223789999999999999999999999
Q ss_pred HHHhcCCHHH----HHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHH-HHHHHHHHHhC--CCCCCccccCCHhHHHH
Q 044044 186 GLCAESRIME----AAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIV-ALNLFEEMANG--NGEFGVVCKPNTVTYNT 258 (508)
Q Consensus 186 ~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 258 (508)
+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... |.++....+.|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998775 55778899999999999999999999999888754 55566665543 44444445556677888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhC----CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 259 IIDGLCKEGFVDKAKELFLKMKDE----NINPD---VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMD 331 (508)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (508)
.++.|.+..+.+-|.++-.-+... -+.|+ ..-|..+....|+....+.-...|+.|.-.-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 899999999999998887766533 12222 23466777788888999999999999988878889999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCC-C---H-----H-----HHHHHH-------HHHHhCCCC
Q 044044 332 ELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTD-K---I-----D-----HARKLF-------VSMESNGCM 390 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---~-----~-----~A~~~~-------~~~~~~~~~ 390 (508)
+..-.|.++-..+++.+++..|...+......++..+++.. . . . -|..++ .++.+. .
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~ 519 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--D 519 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--c
Confidence 99999999999999999998876655555555555555433 1 1 0 111111 122222 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044044 391 HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI----KPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTY 466 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (508)
......+.++-.+.+.|..++|.+++..+...+- .|......-++..-...++...|..+++-|...+...-...-
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La 599 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLA 599 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHH
Confidence 4455677777778889999999999988865532 233333445666667778888888888888766543322233
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~ 484 (508)
+.+...|.-+....+|+.
T Consensus 600 ~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 600 QRIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHHHhcCcCHHHHHHHh
Confidence 444444433333333333
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.6e-16 Score=149.42 Aligned_cols=408 Identities=13% Similarity=0.058 Sum_probs=269.6
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCCcchHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLF--PDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..+..++.++..+...++. ++.+.+.|...+...|+++.++.+.+.+...... .-...|-.+.+++...|++++|.
T Consensus 250 ~s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNE--NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 4567777777777777776 7788888888888888888888888888765311 12345777888888889999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcC----ChHHHHHHHHHH
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTG----HTIVALNLFEEM 238 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~ 238 (508)
..|.+..+....-....+.-|.+.|.+.|+++.+...|+++.... +.+..+...|...|...+ ..++|..++.+.
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 888887765322223344567788888888988888888887763 335666777777777664 456677777776
Q ss_pred HhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh----hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 239 ANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK----DENINPDVVTYTSVIRGFCYANDWNEAKRLFIEM 314 (508)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 314 (508)
.+.. +.|...|..+...+....-+.. +.+|..+. ..+..+.+...|.+...+...|++++|...|...
T Consensus 407 ~~~~-------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 407 LEQT-------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred Hhcc-------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 6653 5567777777776665544433 66555443 3344566777888888888888888888888777
Q ss_pred HHc---CCCCCH------HhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------------------------------
Q 044044 315 MDQ---GVQPDV------VTFSVIMDELCKNGKMDKASRLLELMIWRGV------------------------------- 354 (508)
Q Consensus 315 ~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------- 354 (508)
... ...++. .+-..+..++-..++.+.|.++|..+.+...
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 654 112222 1222344444555566666666666655411
Q ss_pred --CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHH
Q 044044 355 --NPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG-CMHDVVSYNTLINWYCK------------NKDVEEALSLYSEM 419 (508)
Q Consensus 355 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~ 419 (508)
..++..+..+...+.+...+..|.+-|..+.+.- ..+|..+.-.|+..|.. .+..++|+++|.+.
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 1123333333334444444444444333333221 12354555555554432 23568899999988
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCccCH
Q 044044 420 LSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS-KYELNI 498 (508)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~ 498 (508)
++..++ |...-+.+.-+++..|++.+|..+|.+..+... .+..+|..+..+|..+|++-.|+++|+...+. ...-+.
T Consensus 639 L~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 639 LRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred HhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 887544 777778888899999999999999999988733 35667889999999999999999999997754 334455
Q ss_pred HHHHHHH
Q 044044 499 VSYNCLI 505 (508)
Q Consensus 499 ~~~~~ll 505 (508)
.+...|-
T Consensus 717 ~vl~~La 723 (1018)
T KOG2002|consen 717 EVLHYLA 723 (1018)
T ss_pred HHHHHHH
Confidence 5555554
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=4.6e-15 Score=151.80 Aligned_cols=264 Identities=9% Similarity=-0.055 Sum_probs=203.2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhh
Q 044044 211 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVT 290 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (508)
+...|..+..++.. ++.++|+..+.+..... |+......+...+...|++++|...|+++... +|+...
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a 544 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNED 544 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHH
Confidence 56778888888776 78888999888887753 45444444455556899999999999987654 344455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
+..+...+.+.|++++|...+++..+.. +.+...+..+.....+.|++++|...+++.++. .|+...+..+..++.+
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 6677778888999999999999988764 333333334444455669999999999999876 4567788888899999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKL 450 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 450 (508)
.|+.++|...+++..+.. +.+...++.+..++...|++++|+..+++.++..+ -+...+..+..++...|++++|+..
T Consensus 622 lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 622 RHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998885 66778888888899999999999999999988743 3677888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 451 FDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+++..+... -+..+.........+..+++.|.+-+++...
T Consensus 700 l~~Al~l~P-~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 700 ARLVIDDID-NQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHhcCC-CCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999987532 2334555666667777778888887777654
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=1.8e-14 Score=137.76 Aligned_cols=354 Identities=14% Similarity=0.109 Sum_probs=242.9
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHG 161 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 161 (508)
+..|++++|..++.++++..|. +...|..|..+|-+.|+.+++...+-.+.-.. +-|...|..+.....+.|.+++|
T Consensus 150 farg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 3458999999999999999988 99999999999999999999988775554432 55778999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHh----hHHHHHHHHHhcCChHHHHHHHHH
Q 044044 162 FVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVF----TYNTLINGLCRTGHTIVALNLFEE 237 (508)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 237 (508)
.-+|.++++.. +++...+---...|-+.|+...|..-|.++.....+.|.. ....++..+...++-+.|++.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999875 4455666667788899999999999999998875333322 223345667777888999999998
Q ss_pred HHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC---------------------------CCCChhh
Q 044044 238 MANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN---------------------------INPDVVT 290 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~ 290 (508)
...... -..+...++.++..+.+...++.+......+.... ..++..+
T Consensus 306 ~~s~~~-----~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 306 ALSKEK-----DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHhhcc-----ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 887432 23456677888888888888998888887776511 1222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGY 368 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (508)
+ .++-++...+..+....+...+.+..+ .-+...|.-+..++...|++.+|..++..+......-+...|-.+..+|
T Consensus 381 ~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 I-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred H-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1 122223333333333333333444432 2234466667777777777777777777777654444566777777777
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHhHHHHHHHHHHh
Q 044044 369 CLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK--------GIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~p~~~~~~~l~~~~~~ 440 (508)
...|..++|.+.|+.++... +.+...--.|...+.+.|+.++|.+.+..+... +..|+..........+..
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 77777777777777777653 344455556666677777777777777664421 233333333334444455
Q ss_pred cCCHHH
Q 044044 441 IHQVER 446 (508)
Q Consensus 441 ~g~~~~ 446 (508)
.|+.++
T Consensus 539 ~gk~E~ 544 (895)
T KOG2076|consen 539 VGKREE 544 (895)
T ss_pred hhhHHH
Confidence 555444
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=8.7e-14 Score=122.08 Aligned_cols=307 Identities=18% Similarity=0.243 Sum_probs=205.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC--cchHH-HHHHHHHhC-----------
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR--VSHGF-VVLGRILRS----------- 171 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~-~~~~~~~~~----------- 171 (508)
.+++=|.|+. +..+|...++.-+|+.|.+.|++.+...-..|++.-+-.+. .--|. +.|-.|.+.
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 4555666665 45678999999999999999988777776666654332222 11111 111111111
Q ss_pred --------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 172 --------CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 172 --------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
-.+.+..++..+|.++|+.-..+.|.++|++......+.+..++|.+|.+-.- ....+++.+|....
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqk- 268 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQK- 268 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhh-
Confidence 13456778999999999999999999999998877778888899988876443 22378888888887
Q ss_pred CCCccccCCHhHHHHHHHHHHccCCHHHH----HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc-
Q 044044 244 EFGVVCKPNTVTYNTIIDGLCKEGFVDKA----KELFLKMKDENINPDVVTYTSVIRGFCYANDWNE-AKRLFIEMMDQ- 317 (508)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~- 317 (508)
+.||..|+|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.+++..
T Consensus 269 -----m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 269 -----MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred -----cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 899999999999999999987754 5677888899999999999999998888877643 55555555432
Q ss_pred ---CC----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC---HHhHHHHHHHHHcCCCHHHHHHHHHH
Q 044044 318 ---GV----QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG----VNPN---TYTYNTLIDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 318 ---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (508)
.+ +.|...|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....++....+.-...|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 2244466667777777777777777665543221 1222 11234444555556666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 384 MESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG 423 (508)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (508)
|.-.-+.|+..+...++++..-.|.++-.-++|.++...|
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 6555555555555555565555565555555555555443
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=4.3e-15 Score=131.12 Aligned_cols=386 Identities=14% Similarity=0.131 Sum_probs=226.4
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPV----SSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCF 152 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (508)
.|..+++...+..|+++|+-++..-|. .+. ...+.+...+.+.|+++.|+.-|+...+. .|+..+-..|+-++
T Consensus 243 igni~~kkr~fskaikfyrmaldqvps-ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPS-INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICA 319 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccc-cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhh
Confidence 355567777889999999988887766 332 34555556677899999999999998875 57776655666666
Q ss_pred HhcCCcchHHHHHHHHHhCCCC------------CCHHhHHHHHH-----HHHhcC--CHHHHHHHHHHhhhcCCCC---
Q 044044 153 CKMGRVSHGFVVLGRILRSCFT------------PNAVTFTSLIK-----GLCAES--RIMEAAALFTKHRVFACEP--- 210 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~~-----~~~~~g--~~~~A~~~~~~~~~~~~~~--- 210 (508)
...|+.++-.+.|.+|+..... |+....+..+. -+-+.. +.++++-.--++...-+.|
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 6778888888888888764222 22333332221 111111 1111111111111100011
Q ss_pred ------------------CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH------------
Q 044044 211 ------------------DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII------------ 260 (508)
Q Consensus 211 ------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------ 260 (508)
-...-..-...+.+.|+++.|+++++-+...+. +.-...-+.|.
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn------k~~saaa~nl~~l~flqggk~~~ 473 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN------KTASAAANNLCALRFLQGGKDFA 473 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc------hhhHHHhhhhHHHHHHhcccchh
Confidence 011111223456778888888888877776552 11111111111
Q ss_pred ------------------------HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 261 ------------------------DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 261 ------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
......|++++|.+.|.+.....-.-....||. .-.+...|+.++|++.|-++..
T Consensus 474 ~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~ 552 (840)
T KOG2003|consen 474 DAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHA 552 (840)
T ss_pred HHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHH
Confidence 112235667777777777665422222222222 2234556777777777766544
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044044 317 QGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSY 396 (508)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (508)
. +..+..+...+.+.|-...+...|++++.+.... ++.|+.+...|...|-+.|+-..|.+.+-.--+- ++-+..+.
T Consensus 553 i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~i 629 (840)
T KOG2003|consen 553 I-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETI 629 (840)
T ss_pred H-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHH
Confidence 2 2234556666666777777777777777665543 4445667777777777777777776665444332 35566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL-FEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK 475 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 475 (508)
.-|...|....-+++|+.+|++..- +.|+..-|..++..| .+.|++++|.++++...+. ++.|......|++.+..
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcc
Confidence 6667777777777777777776654 466777776665444 4567777777777777665 55567777777776665
Q ss_pred cCC
Q 044044 476 SGF 478 (508)
Q Consensus 476 ~g~ 478 (508)
.|.
T Consensus 707 lgl 709 (840)
T KOG2003|consen 707 LGL 709 (840)
T ss_pred ccc
Confidence 553
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=3.2e-13 Score=124.71 Aligned_cols=351 Identities=13% Similarity=0.057 Sum_probs=189.0
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH----HHhCCCCCCHHhHHHHHHHHHhcCCc
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKR----LNSAGLFPDIYTHSILINCFCKMGRV 158 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (508)
+...|+.|..+++.+.+.-|. +...|-.-...--.+|+.+...+++.+ +...|+..+...|..=...|-..|..
T Consensus 418 rLetYenAkkvLNkaRe~ipt--d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPT--DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 345567777777777777666 666776666666667777777777655 33456666666666666666666666
Q ss_pred chHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 044044 159 SHGFVVLGRILRSCFTP--NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFE 236 (508)
Q Consensus 159 ~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 236 (508)
-.+..+....+..|++. -..+|..-...|.+.+.++-|..+|....+.- +.+...|......--..|..++-..+|+
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66666666665555432 23455555566666666666666666655432 3344455555554455566666666666
Q ss_pred HHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 237 EMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
+.... ++.....|......+-..|+...|..++....+.. +.+...|..-+..-....+++.|..+|.+...
T Consensus 575 kav~~-------~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 575 KAVEQ-------CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHh-------CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 66554 34444555555555566666666666666665542 22455555555555666666666666665554
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 044044 317 QGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395 (508)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (508)
. .|+...|.--+....-.+..++|.+++++.++. -|+ ...|..+.+.+-+.++.+.|.+.|..-.+. ++.....
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipL 721 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPL 721 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchH
Confidence 3 344455554455555555666666666555543 222 334444444444444444444444433332 1223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKL 450 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 450 (508)
|-.+...-.+.|.+-.|..++++..-++++ +...|...+..-.+.|+.+.|..+
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHH
Confidence 333333333444444444444444433322 333444444444444444444333
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=3.2e-15 Score=131.93 Aligned_cols=402 Identities=14% Similarity=0.155 Sum_probs=266.0
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------HHhHHHHHHHHHhcCCcc
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSF-NILFGCLAKNKHYDTVLSLFKRLNSAGLFPD------IYTHSILINCFCKMGRVS 159 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~ 159 (508)
..+|+..|+-+++..-. |+.... -.+...+.+..++.+|++.|+..+.. .|+ ....+.+...+.+.|+++
T Consensus 217 ~~ealntyeiivknkmf-~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMF-PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred HHHHhhhhhhhhccccc-CCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccch
Confidence 35566666655554444 444332 24556677788889999998887765 333 224455556678899999
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC------------CHhhHHHHH-----HHH
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEP------------DVFTYNTLI-----NGL 222 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~-----~~~ 222 (508)
.|+.-|+...+. .|+..+-..|+-++..-|+.++..+.|.+|...-..+ +....+.-+ .-.
T Consensus 294 dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ 371 (840)
T KOG2003|consen 294 DAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNM 371 (840)
T ss_pred hhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHH
Confidence 999999988776 5777766666767777799999999999987653222 222222222 111
Q ss_pred HhcC--ChHHHHHHHHHHHhCCCCCCccccCCHh---------------------HHHHHHHHHHccCCHHHHHHHHHHH
Q 044044 223 CRTG--HTIVALNLFEEMANGNGEFGVVCKPNTV---------------------TYNTIIDGLCKEGFVDKAKELFLKM 279 (508)
Q Consensus 223 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (508)
-+.+ +.++++-.--++..-- +.|+-. .-..-..-+.+.|+++.|.+++.-.
T Consensus 372 ek~~ka~aek~i~ta~kiiapv------i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 372 EKENKADAEKAIITAAKIIAPV------IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHhhhhhHHHHHHHHHHHhccc------cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111 1222222222221110 112110 0112245688999999999998777
Q ss_pred hhCCCCCChhhHHHHH------------------------------------HHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 044044 280 KDENINPDVVTYTSVI------------------------------------RGFCYANDWNEAKRLFIEMMDQGVQPDV 323 (508)
Q Consensus 280 ~~~~~~~~~~~~~~l~------------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 323 (508)
.+..-......-+.|- +.....|++++|.+.|++.+..+..-..
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 6543221111111110 0112357888999999888775322222
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..|+ +.-.+-..|+.++|+..|-.+..- +..+..+...+...|....+...|++++-+.... ++.|+.....|...|
T Consensus 526 alfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLY 602 (840)
T ss_pred HHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHh
Confidence 2333 333567789999999988766533 2336777778888899999999999999887665 577899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFID-GLCKSGFVLEA 482 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A 482 (508)
-+.|+-..|.+.+-+--+. ++-|..+...|...|....-+++++.+|++..- ++|+..-|..++. ++.+.|++++|
T Consensus 603 dqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999987665544 556888999999999999999999999998764 6899999988776 45788999999
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHc
Q 044044 483 LELFRAIRDSKYELNIVSYNCLID 506 (508)
Q Consensus 483 ~~~~~~m~~~g~~p~~~~~~~ll~ 506 (508)
.++|+...++ +.-|.....-|+.
T Consensus 680 ~d~yk~~hrk-fpedldclkflvr 702 (840)
T KOG2003|consen 680 FDLYKDIHRK-FPEDLDCLKFLVR 702 (840)
T ss_pred HHHHHHHHHh-CccchHHHHHHHH
Confidence 9999998754 5556666655554
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=8.8e-14 Score=133.13 Aligned_cols=364 Identities=12% Similarity=0.060 Sum_probs=283.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 044044 117 LAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEA 196 (508)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 196 (508)
+...|++++|..++.+.++.. +.....|..|...|-..|+.+++...+-.+.-.. +.|...|..+.....+.|.+++|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 444599999999999999875 6678899999999999999999998776665443 45678999999999999999999
Q ss_pred HHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH----HHHHHHHHccCCHHHH
Q 044044 197 AALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY----NTIIDGLCKEGFVDKA 272 (508)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a 272 (508)
.-.|.+.++.. +++...+..-+..|.+.|+...|..-|.++.... .+.|..-. -.++..+...++-+.|
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999885 5566666677889999999999999999999875 22222222 3345667777777999
Q ss_pred HHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------------------CCHH
Q 044044 273 KELFLKMKDE-NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ---------------------------PDVV 324 (508)
Q Consensus 273 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------~~~~ 324 (508)
.+.++..... +-..+...++.++..+.+..+++.|......+...... ++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 9999887663 22345677889999999999999999988887662111 1222
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRG--VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
. ..++-++......+....+.....+.. +.-+...|.-+..+|...|++.+|+.+|..+.......+...|-.+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 123334555566666666666666666 3334678899999999999999999999999988666678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR--------RNHVAADTYTYNNFIDGLC 474 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~ 474 (508)
|...|.+++|.+.|+..+...+ .+...-..|...+.+.|+.++|.+.++.+. ..+..|+........+.+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 9999999999999999998732 245556678888999999999999999854 2345666667777778899
Q ss_pred hcCCHHHHHHHHHHHHH
Q 044044 475 KSGFVLEALELFRAIRD 491 (508)
Q Consensus 475 ~~g~~~~A~~~~~~m~~ 491 (508)
..|+.++-+.+-..|++
T Consensus 538 ~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVD 554 (895)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 99999987777777764
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=2.3e-12 Score=119.15 Aligned_cols=388 Identities=12% Similarity=0.034 Sum_probs=310.4
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
..++++|+.++..+.+--|. +...|.+ |.+..-|+.|..++++..+. ++-+...|......--.+|+.+...+
T Consensus 389 lE~~~darilL~rAveccp~--s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECCPQ--SMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred ccChHHHHHHHHHHHHhccc--hHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 34566777777777777666 5555544 44556688888888888875 67788888887777778888888888
Q ss_pred HHHHHH----hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHH
Q 044044 164 VLGRIL----RSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD--VFTYNTLINGLCRTGHTIVALNLFEE 237 (508)
Q Consensus 164 ~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 237 (508)
++.+.+ ..|+..+...|-.=...|-..|..-.+..+....+..|++-. ..+|..-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 776644 357788888888888888888888888888888887775533 45888888999999999999999999
Q ss_pred HHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 238 MANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
..... +.+...|......--..|..++...+|+++... ++-....|......+-..|+...|..++.+..+.
T Consensus 542 alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~ 613 (913)
T KOG0495|consen 542 ALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA 613 (913)
T ss_pred HHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Confidence 88863 566778888887777889999999999999876 3445667777777788889999999999998886
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 318 GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
. +.+...|-.-+........++.|..+|.+.... .|+..+|.--+....-.++.++|.+++++.++. ++.-...|.
T Consensus 614 ~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~l 689 (913)
T KOG0495|consen 614 N-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWL 689 (913)
T ss_pred C-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHH
Confidence 3 346678888888889999999999999988754 667777877777777789999999999998886 244566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 477 (508)
.+...+.+.++.+.|...|..-.+. ++-....|..|...-.+.|.+-.|..++++..-.+. -+...|...|..-.+.|
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAG 767 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcC
Confidence 8889999999999999998776665 333556777787888888999999999999887654 48889999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 044044 478 FVLEALELFRAIRDS 492 (508)
Q Consensus 478 ~~~~A~~~~~~m~~~ 492 (508)
+.+.|..++-+.++.
T Consensus 768 n~~~a~~lmakALQe 782 (913)
T KOG0495|consen 768 NKEQAELLMAKALQE 782 (913)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999988887753
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.3e-13 Score=122.96 Aligned_cols=400 Identities=14% Similarity=0.079 Sum_probs=268.0
Q ss_pred hhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 044044 74 CKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINCF 152 (508)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 152 (508)
.+..|.-++..|++++|++.|.+++...|. .+.-|.....+|...|+|+++++.-.+.++. .|+ ...+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 456788889999999999999999999876 5788999999999999999999999888875 455 33556666777
Q ss_pred HhcCCcchHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC--CCCCHhhHHHHHHHHH------
Q 044044 153 CKMGRVSHGFVVLGRIL-RSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA--CEPDVFTYNTLINGLC------ 223 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~------ 223 (508)
-..|++++|+.-..-.- -.|+. |..+--.+=+.+-+.+. ..+.+-+. +.+ +-|......+....+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a~-~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQAM-KKAKEKLK---ENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHHH-HHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccccc
Confidence 77888877764322211 11111 11111111111111110 11111111 111 1122222222222111
Q ss_pred -------------------hcC---ChHHHHHHHHHHHhCCCCCCccccCC---------HhHHHHHHHHHHccCCHHHH
Q 044044 224 -------------------RTG---HTIVALNLFEEMANGNGEFGVVCKPN---------TVTYNTIIDGLCKEGFVDKA 272 (508)
Q Consensus 224 -------------------~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~a 272 (508)
..+ .+.+|.+.+.+-....... ...+ ..+.......+.-.|+.-.|
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~---~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESS---LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhh---ccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 011 2333443333322211000 0111 12222223334557899999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 044044 273 KELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWR 352 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 352 (508)
.+-|+..+.....+ ...|..+...|....+.++....|.+..+.+ +.|..+|..-...+.-.+++++|..-|++.+..
T Consensus 346 ~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998874433 3337778888999999999999999998875 557778888888888999999999999999976
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CC
Q 044044 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK-----PT 427 (508)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~ 427 (508)
.. .+...|-.+..+..+.+++++++..|++..++ +|..+..|+.....+...+++++|.+.|+..++.... .+
T Consensus 424 ~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 424 DP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred Ch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 42 25667777777778899999999999999877 4777899999999999999999999999999875322 12
Q ss_pred HhHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 428 VVTY--NTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 428 ~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
...+ -.++. +.-.+++..|++++++..+.+.. ....|..|...-.+.|+.++|+++|++...
T Consensus 502 ~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 502 AAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred chhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2211 12222 22448999999999999986433 456788999999999999999999998763
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=5.8e-14 Score=133.06 Aligned_cols=289 Identities=14% Similarity=0.013 Sum_probs=203.2
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH--hHHHHHHHHHH
Q 044044 188 CAESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT--VTYNTIIDGLC 264 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 264 (508)
...|+++.|.+.+.+..+. .|+ ...+-....++.+.|+++.|.+++.+..+.. |+. .........+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--------GNDNILVEIARTRILL 164 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CcCchHHHHHHHHHHH
Confidence 3458888999888877665 333 3344555677778899999999998887643 333 23344577788
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH---HhcCChhH
Q 044044 265 KEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDEL---CKNGKMDK 341 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~ 341 (508)
..|+++.|.+.++.+.+.. +-+...+..+...+.+.|+|++|.+.+..+.+.+..+.......-..++ ...+..++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999888874 3356678888888899999999999999988876443222211111111 23333333
Q ss_pred HHHHHHHHHHcCC---CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHH
Q 044044 342 ASRLLELMIWRGV---NPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS---YNTLINWYCKNKDVEEALSL 415 (508)
Q Consensus 342 a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~ 415 (508)
+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 4445555554422 1377888888899999999999999999988874 33321 12222223445788889999
Q ss_pred HHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 416 YSEMLSKGIKPTV--VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 416 ~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+++..+..+ -|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 322 ~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 322 IEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 988887632 244 56678899999999999999999954444457888888899999999999999999998865
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.7e-12 Score=114.36 Aligned_cols=395 Identities=12% Similarity=0.128 Sum_probs=278.3
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCcch
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 160 (508)
.++++++.|..+|+.++..+.. +...|-..+.+-.++++...|..++++.+.. -|- ...|--.+..--..|++.-
T Consensus 84 esq~e~~RARSv~ERALdvd~r--~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYR--NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHH
Confidence 4567889999999999987755 8889999999999999999999999998875 333 2345555555567789999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
|.++|++-..- .|+...|.+.|..=.+.+.++.|..+|++.... .|++..|......-.+.|+..-|..+|+...+
T Consensus 160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999988765 789999999999988999999999999998765 68888888888888888999888888888776
Q ss_pred CCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC-------------------------------------
Q 044044 241 GNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN------------------------------------- 283 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------------------------------- 283 (508)
.-+. -.-+...+.+....-.++..++.|.-+|.-.++.-
T Consensus 236 ~~~~----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 236 FLGD----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred Hhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 4311 01122334444433334445555555554443320
Q ss_pred ------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--hHHH----HHH-H---HHhcCChhHHHHHHH
Q 044044 284 ------INPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV--TFSV----IMD-E---LCKNGKMDKASRLLE 347 (508)
Q Consensus 284 ------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~----l~~-~---~~~~~~~~~a~~~~~ 347 (508)
.+.|-.+|--.+..-...|+.+...++|+..+.. ++|-.. .|.. .++ + -....+.+.+.+++.
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1223444555555555667777777777777654 343211 1111 111 1 123566777777777
Q ss_pred HHHHcCCCCCHHhHHHH----HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 348 LMIWRGVNPNTYTYNTL----IDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG 423 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (508)
..++. ++....|+.-+ .....++.++..|.+++...+.. .|-..++...|..-.+.++++.+..++++.++-+
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 77653 33334444333 33344667788888888776654 6777788888888888899999999999999875
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 424 IKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH-VAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
+. |-.+|......-...|+.+.|..+|+-+++.. .......|.+.|+--...|.++.|..+|+++++..
T Consensus 468 Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 468 PE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 44 67788888887788899999999999888652 33345578888888888999999999999998653
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=9.8e-14 Score=130.75 Aligned_cols=283 Identities=14% Similarity=0.065 Sum_probs=195.4
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHH--HHHHHHHcc
Q 044044 190 ESRIMEAAALFTKHRVFACEPDVFT-YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN--TIIDGLCKE 266 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 266 (508)
.|+++.|.+.+.+..... +++.. |........+.|+++.|...+.++.+.. |+..... .....+...
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--------~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--------DNDQLPVEITRVRIQLAR 166 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHHC
Confidence 488888887777655432 12233 3333444477888888888888887643 4433222 335677788
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------hHHHHHHHHHhcCCh
Q 044044 267 GFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV-------TFSVIMDELCKNGKM 339 (508)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~ 339 (508)
|++++|.+.++++.+.. +-+......+...|.+.|+|++|.+++..+.+.+..++.. .|..++.......+.
T Consensus 167 g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 167 NENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 88888888888887764 3356777778888888888888888888888765442221 222333333344445
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 340 DKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
+...++++...+. .+.++.....+...+...|+.++|.+++++..+. +++.... ++.+....++.+++++..++.
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 5555666555433 2346777788888888889999998888888774 4555322 233344558888888888888
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 420 LSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+..+ -|...+..+...|...+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 321 lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 87643 35666778888888889999999999888874 67888888888888889999999888887753
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=9.8e-14 Score=130.77 Aligned_cols=283 Identities=11% Similarity=0.056 Sum_probs=197.0
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhH--HHHHHHHHhcCChHHH
Q 044044 155 MGRVSHGFVVLGRILRSCFTPNAVTFTSL-IKGLCAESRIMEAAALFTKHRVFACEPDVFTY--NTLINGLCRTGHTIVA 231 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A 231 (508)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|...+.++.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 578888887777654432 223333333 34446778888888888887765 4444322 2336677788888888
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhcCCH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV-------VTYTSVIRGFCYANDW 304 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~ 304 (508)
...++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.
T Consensus 173 l~~l~~~~~~~-------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 173 RHGVDKLLEVA-------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 88888887764 445677778888888888888888888888876544222 1223333333344555
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 044044 305 NEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSM 384 (508)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (508)
+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.+..+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 6666666665433 2446677778888888888999988888888874 4444222 233444568888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 385 ESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.+.. +.|...+..+...+.+.|++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 321 lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7764 567777888888888889999999999888875 67888888888888889999999888887654
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=7.1e-14 Score=118.29 Aligned_cols=295 Identities=16% Similarity=0.168 Sum_probs=135.2
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
.+++++|.++|-++++.+|. +.++.-.|.+.+.+.|..+.|+.+.+.+.++ ||.. +.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT-~~----------------- 104 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLT-FE----------------- 104 (389)
T ss_pred hcCcchHHHHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCc-hH-----------------
Confidence 34555555555555554444 4445555555555555555555555555442 2210 00
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
........|..-|...|-++.|+.+|..+.+.+ .--......|+..|....+|++|+++-+++...++
T Consensus 105 -----------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 105 -----------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred -----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 001122334444555555555555555554432 22334445555555555555555555555554442
Q ss_pred CCCccccCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044044 244 EFGVVCKPN-TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322 (508)
Q Consensus 244 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 322 (508)
.. .... ...|--+...+....+.+.|..++.+..+.+.+ .+..-..+.......|+++.|.+.++.+.+.+..--
T Consensus 173 q~---~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 173 QT---YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred cc---chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 10 0001 123344444444555555555555555544211 223333344455555555555555555555432222
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
..+...+..+|...|+.++....+..+.+....++ .-..+.+......-.+.|...+.+-... .|+...+..++..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 33445555556666666666666555554422222 2222333223333344444444333332 3566555555554
Q ss_pred HHh---cCCHHHHHHHHHHHHH
Q 044044 403 YCK---NKDVEEALSLYSEMLS 421 (508)
Q Consensus 403 ~~~---~g~~~~A~~~~~~~~~ 421 (508)
... .|...+.+.+++.|..
T Consensus 325 ~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 325 HLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred hhccccccchhhhHHHHHHHHH
Confidence 432 2334444555555544
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=2e-13 Score=129.43 Aligned_cols=293 Identities=7% Similarity=-0.015 Sum_probs=202.8
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 044044 153 CKMGRVSHGFVVLGRILRSCFTPNA-VTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVA 231 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 231 (508)
...|+++.|.+.+.+..+.. |+. ..+-.....+...|+.++|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35688888888888776653 333 333444567777889999999888876653222223344457778888999999
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHH-HHHHH---HHhcCCHHHH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYT-SVIRG---FCYANDWNEA 307 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~g~~~~a 307 (508)
...++.+.+.. |.+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..+ ....+..++.
T Consensus 173 l~~l~~l~~~~-------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 173 RHGVDKLLEMA-------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988875 446677888888899999999999999988887644 322221 11111 1223333333
Q ss_pred HHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHcCCCHHHHHHHHHH
Q 044044 308 KRLFIEMMDQG---VQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYT-YNTLIDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 308 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~ 383 (508)
.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+......... ...........++.+.+.+.++.
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 44555544432 123677888888899999999999999999988643221111 11122223445778888888888
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 384 MESNGCMHDV--VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 384 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
..+.. +.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 325 ~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87763 4455 667788999999999999999999544444578888888999999999999999999987653
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.7e-16 Score=142.94 Aligned_cols=263 Identities=19% Similarity=0.142 Sum_probs=110.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIR 296 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 296 (508)
.+...+.+.|++++|++++++...... .+.|...|..+...+...++++.|.+.++++...+.. +...+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-----~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~ 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA-----PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 557788889999999999965443320 1345566777777888889999999999999876433 5556777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHcCCCHH
Q 044044 297 GFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG-VNPNTYTYNTLIDGYCLTDKID 375 (508)
Q Consensus 297 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 375 (508)
. ...+++++|.++++...+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.+
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred c-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 6 6889999999998877654 2456667778888899999999999998877543 3456778888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 376 HARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
+|.+.+++..+.. |.|....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|+.++++..
T Consensus 164 ~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 9999999998875 4467888889999999999999888888877763 3456677889999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 456 RNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 456 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+. .+.|......+.+++...|+.++|.++.++...
T Consensus 242 ~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 KL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH-STT-HHHHHHHHHHHT-----------------
T ss_pred cc-ccccccccccccccccccccccccccccccccc
Confidence 75 344888888999999999999999998887653
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.8e-12 Score=112.27 Aligned_cols=395 Identities=12% Similarity=0.125 Sum_probs=270.8
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
.......|+.+++.++..-|. -...|-..+.+--..|+...|.++|++..+ ..|+...|.+.|+.-.+.+..+.|.
T Consensus 119 knk~vNhARNv~dRAvt~lPR--VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR 194 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTILPR--VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERAR 194 (677)
T ss_pred hhhhHhHHHHHHHHHHHhcch--HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHH
Confidence 455667777777777776665 444566666666667777777777777765 3677777777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC--CCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE--PDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
.++++.+-. .|++..|--....=.++|.+..|..+|....+.-.. .+...+.+...--.++..++.|.-+|+-...
T Consensus 195 ~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 195 SIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776643 467777777777667777777777777665543101 0112222222222233334443333332221
Q ss_pred CCC----------------CCCc---------------------cccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 044044 241 GNG----------------EFGV---------------------VCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN 283 (508)
Q Consensus 241 ~~~----------------~~~~---------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 283 (508)
.-+ .+|. .-+-|-.+|-..+..-...|+.+...++|++.+..
T Consensus 273 ~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan- 351 (677)
T KOG1915|consen 273 HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN- 351 (677)
T ss_pred hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-
Confidence 110 0000 02446677888888888899999999999999876
Q ss_pred CCCCh--hhHHHHHH-----HH---HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----HhcCChhHHHHHHHHH
Q 044044 284 INPDV--VTYTSVIR-----GF---CYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDEL----CKNGKMDKASRLLELM 349 (508)
Q Consensus 284 ~~~~~--~~~~~l~~-----~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~ 349 (508)
++|-. ..|..-|. ++ ....+.+.+.++|+..++. ++....||.-+--.| .+..++..|.+++..+
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45421 12222222 11 3468999999999999884 555566666554444 4678999999999998
Q ss_pred HHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH
Q 044044 350 IWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG-IKPTV 428 (508)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~ 428 (508)
+ |..|...++...|..-.+.+++|.+..++++.++-+ |-+..+|......-...|+.+.|..+|.-++... .....
T Consensus 431 I--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 431 I--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred h--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 8 678899999999999999999999999999999986 6688889988888889999999999999998762 22234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 044044 429 VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLC-----KSG-----------FVLEALELFRAIR 490 (508)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~g-----------~~~~A~~~~~~m~ 490 (508)
..|-..|.--...|.++.|..+++++.+. .+...+|.+...--. +.| ....|.++|++..
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 45666677677899999999999999975 234446665554332 334 5567888888775
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.2e-12 Score=111.82 Aligned_cols=376 Identities=11% Similarity=-0.013 Sum_probs=259.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCH-Hh-HHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNA-VT-FTSL 183 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~-~~~l 183 (508)
|...+-..+..+.+.|....|++.|...... .+-.=..|..|...+. + ++........ .+.+. .. --.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~----~e~~~~l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---D----IEILSILVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---h----HHHHHHHHhc-CcccchHHHHHHH
Confidence 3334444445566778888888888777653 1223333443333321 1 2222222222 12221 11 1123
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHH
Q 044044 184 IKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGL 263 (508)
Q Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (508)
..++....+.+++.+-.......|.+.+...-+....+.....|++.|+.+|+++.+.++- --.|..+|..++-+-
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY----Rl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY----RLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC----cchhHHHHhHHHHHH
Confidence 3556666788888888888888887767776677777778899999999999999998642 223567787776443
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 044044 264 CKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKAS 343 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 343 (508)
....+ +..+-+-...--+--+.|...+.+-|.-.++.++|...|+..++.+ +.....|+.+..-|....+...|.
T Consensus 310 ~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 22211 1112111111012235678888888888999999999999999874 335568888888999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 344 RLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG 423 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (508)
+-++.+++-+ +.|-..|-.|.++|.-.+.+.-|.-.|++..+.. +.|...|.+|+.+|.+.++.++|++.|++....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999774 3478899999999999999999999999998875 6789999999999999999999999999999876
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC
Q 044044 424 IKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN----HVAAD--TYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
-. +...+..|...|-+.++.++|...|++-++. |...+ ...-.-|..-+.+.+++++|.......... .+.
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e 539 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETE 539 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cch
Confidence 33 6678999999999999999999999877652 33322 122223555677888888887766555432 444
Q ss_pred HHHHHHH
Q 044044 498 IVSYNCL 504 (508)
Q Consensus 498 ~~~~~~l 504 (508)
..--+.|
T Consensus 540 ~eeak~L 546 (559)
T KOG1155|consen 540 CEEAKAL 546 (559)
T ss_pred HHHHHHH
Confidence 4333333
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=4.5e-14 Score=130.92 Aligned_cols=292 Identities=15% Similarity=0.071 Sum_probs=230.3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHH
Q 044044 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVD 270 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 270 (508)
-+..+|+..|.++... +.-+..+...+..+|...+++++|.++|+.+....+- ...+...|.+.+..+-+ +
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~----rv~~meiyST~LWHLq~----~ 403 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY----RVKGMEIYSTTLWHLQD----E 403 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cccchhHHHHHHHHHHh----h
Confidence 3567899999996554 2334567778999999999999999999999987642 23467788877765433 2
Q ss_pred HHHHHH-HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 044044 271 KAKELF-LKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELM 349 (508)
Q Consensus 271 ~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 349 (508)
-++..+ +.+.+. -+-.+.+|..+.++|.-+++.+.|++.|++..+.+ +-...+|+.+..-+....++|.|...|+.+
T Consensus 404 v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 404 VALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 233333 223332 23367899999999999999999999999998863 226778888888888999999999999998
Q ss_pred HHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044044 350 IWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV 429 (508)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (508)
+..... +-..|.-+.-.|.+.++++.|+-.|+++.+.+ +.+.+....++..+.+.|+.++|+.+++++.....+ |+.
T Consensus 482 l~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 482 LGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred hcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 854211 23455567788999999999999999999987 667788888899999999999999999999987655 555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
.-...+..+...+++++|+..++++++. ++.+...+-.+...|.+.|+.+.|+.-|--|.+..-+++
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5566777888899999999999999986 455677888899999999999999999988886543333
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=3.4e-16 Score=140.99 Aligned_cols=221 Identities=15% Similarity=0.105 Sum_probs=53.9
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHH
Q 044044 151 CFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIV 230 (508)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 230 (508)
.+...++.+.|.+.++++...+.. +...+..++.. ...+++++|.+++.+..+. .++...+..++..+.+.+++++
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHH
Confidence 333344444444444444433211 22233333333 3344444444444333222 1233333334444444444444
Q ss_pred HHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 044044 231 ALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRL 310 (508)
Q Consensus 231 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 310 (508)
+.++++.+..... .+.+...|..+...+.+.|+.++|.+.+++..+.. +.|....+.++..+...|+.+++.++
T Consensus 129 ~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 129 AEELLEKLEELPA-----APDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp HHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 4444444332211 12333344444444444444444444444444431 11233344444444444444444444
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 044044 311 FIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (508)
++...+.. +.|...+..+..++...|+.++|...++...+.. +.|......+..++...|+.++|.++.++
T Consensus 203 l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 203 LKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 44433331 2222333344444444444444444444444331 11344444444444444444444444433
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=9.7e-13 Score=111.52 Aligned_cols=292 Identities=13% Similarity=0.105 Sum_probs=201.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHH
Q 044044 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVD 270 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 270 (508)
.+.++|.++|-+|.+.. +.+..+-.+|.+.|.+.|..+.|+.+.+.+.++.... ..--......|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT---~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT---FEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHHHHhhhhh
Confidence 66778888888777642 3344556677888888888888888888877653200 0011223445667778888888
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHhcCChhHHHHHH
Q 044044 271 KAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV----TFSVIMDELCKNGKMDKASRLL 346 (508)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~ 346 (508)
.|+++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+..+ .|.-+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 8888888887753 2245567788888888888999998888888765444322 4555666666678888899999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044044 347 ELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKP 426 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 426 (508)
.++.+.+.. .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+....
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g- 281 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG- 281 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-
Confidence 888876422 344444566788888999999999999888764444556778888899999999999999888886333
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHc
Q 044044 427 TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLC---KSGFVLEALELFRAIRDS 492 (508)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~ 492 (508)
...-..+...-....-.+.|..++.+-.+. .|+...+..+++.-. ..|...+-+.+++.|...
T Consensus 282 -~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 -ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333344444444455566666665554443 588888888887643 345567777788888743
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=7e-14 Score=129.71 Aligned_cols=292 Identities=13% Similarity=0.042 Sum_probs=214.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCHHHHH
Q 044044 120 NKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCF--TPNAVTFTSLIKGLCAESRIMEAA 197 (508)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 197 (508)
.-+.++|+.+|+.+... +.-.......+..+|...+++++|..+|+.+.+... -.+..+|.+.+-.+-+ +-++
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 34567888888885554 344456667788888899999999999988876521 2355677766654422 2233
Q ss_pred HHHHH-hhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHH
Q 044044 198 ALFTK-HRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELF 276 (508)
Q Consensus 198 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 276 (508)
.++.+ +... -+-.+.+|.++.++|..+++.+.|++.|++....+ +....+|+.+..-+.....+|.|...|
T Consensus 407 s~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 407 SYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHH
Confidence 33333 2222 24467889999999999999999999999988865 336778888888888888999999999
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 044044 277 LKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNP 356 (508)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 356 (508)
+....... .+-..|-.+.-.|.+.++++.|+-.|+++.+.. +-+.+....+...+-+.|+.|+|+++++++...+..
T Consensus 479 r~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k- 555 (638)
T KOG1126|consen 479 RKALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK- 555 (638)
T ss_pred HhhhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-
Confidence 88876421 123344456677889999999999999888764 446667777788888899999999999998876543
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTV 428 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 428 (508)
|+..--..+..+...+++++|...++++.+. ++.+...+-.++..|.+.|+.+.|+.-|.-+.+..++++.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 4444445566677788999999999998876 3556667788888999999999999988888887555444
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.3e-12 Score=111.76 Aligned_cols=366 Identities=15% Similarity=0.084 Sum_probs=262.7
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhH-HHHHHHHHhcCCcch
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTH-SILINCFCKMGRVSH 160 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-~~l~~~~~~~g~~~~ 160 (508)
..|....|++.|-..+...|. +-.+|..|..... + +++...... |.+.| ...- -.+..++....+.++
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~--~W~AWleL~~lit---~----~e~~~~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPW--FWSAWLELSELIT---D----IEILSILVV-GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCc--chHHHHHHHHhhc---h----HHHHHHHHh-cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888777666 5455555444332 2 222222222 11222 1111 234467777778899
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC--CCHhhHHHHHHHHHhcCChHHHHHHHH-H
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE--PDVFTYNTLINGLCRTGHTIVALNLFE-E 237 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~-~ 237 (508)
+.+-.+.....|++.+...-+....+.....++++|+.+|+++.+...- .|..+|..++-.--... .+.++. .
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s----kLs~LA~~ 321 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS----KLSYLAQN 321 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH----HHHHHHHH
Confidence 9999999988888877777777777778889999999999999886311 14566766654332211 122222 2
Q ss_pred HHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 238 MANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
....+ +--+.|+..+.+-|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|++-|+..++.
T Consensus 322 v~~id-------KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 322 VSNID-------KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHhc-------cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 22222 223567778888899999999999999999986432 5678889999999999999999999999987
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 318 GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
. +-|-..|-.+.++|.-.+.+.=|+-.|+++.+.. +.|...|.+|.++|.+.++.++|++.|......| ..+...+.
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 4 6688899999999999999999999999998764 4479999999999999999999999999999887 44668899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSK----GIK-P-TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFID 471 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 471 (508)
.+...|-+.++.++|...|++.++. |.. | .......|..-+.+.+++++|..+.......
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-------------- 536 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-------------- 536 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------------
Confidence 9999999999999999999887763 322 2 1222333556667777777776655444332
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 044044 472 GLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 472 ~~~~~g~~~~A~~~~~~m~~ 491 (508)
.-..++|..++++++.
T Consensus 537 ----~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 ----ETECEEAKALLREIRK 552 (559)
T ss_pred ----CchHHHHHHHHHHHHH
Confidence 2234667777777664
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=5.2e-12 Score=110.51 Aligned_cols=291 Identities=11% Similarity=0.051 Sum_probs=211.2
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCH
Q 044044 190 ESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFV 269 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (508)
.|++..|+++..+..+.+ +.....|..-+.+.-+.|+.+.+-.++.+..+.. -.++...+-.........|++
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------GDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHhCCCc
Confidence 488888888888877765 3345556666777778888888888888887753 245566677777788888888
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------hHHHHHHHHHhcCChhHH
Q 044044 270 DKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV-------TFSVIMDELCKNGKMDKA 342 (508)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a 342 (508)
+.|..-.+++.+.+. .++.......++|.+.|+|.+...++..+.+.|.-.+.. +|..++.-....+..+.-
T Consensus 170 ~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 170 PAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred hhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 888888888877643 356677788888888888888888888888877654442 555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 343 SRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
...++....+ ...++..-.+++.-+.++|+.++|.++..+..+++..+.. ...-.+.+-++.+.-++..++-...
T Consensus 249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh
Confidence 5566655443 3445666777788888889999999888888887644441 1223355677777777777766655
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 044044 423 GIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYEL 496 (508)
Q Consensus 423 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 496 (508)
. +-++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+.++|.+.+++....-.+|
T Consensus 324 h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 324 H-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred C-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 2 22457788888888899999999999987776 46788888889999999999999888888876433333
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=6.4e-12 Score=109.96 Aligned_cols=288 Identities=10% Similarity=0.035 Sum_probs=206.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 044044 119 KNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAA 198 (508)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (508)
-.|+|.+|.++..+..+.+ ......|..-.++.-+.|+.+.+-.++.++.+....++....-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3699999999999988776 334556666778888999999999999999887556677778888888999999999999
Q ss_pred HHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH-------hHHHHHHHHHHccCCHHH
Q 044044 199 LFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT-------VTYNTIIDGLCKEGFVDK 271 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~ 271 (508)
-++++.+.+ +.+..+......+|.+.|++.....++..+.+.+ .-.+. .+|..+++-....+..+.
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~------~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG------LLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc------CCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999988876 5578888999999999999999999999999887 22222 355666666555555566
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 272 AKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
-...++...++ ...++..-..++.-+.+.|+.++|.++.++..+.+..|+.. ..-.+.+-++...-.+..+.-.+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHH
Confidence 55666666544 33345555666667777777777777777777765544411 12234555666666666665555
Q ss_pred cCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 352 RGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.. +.++..+.+|...|.+.+.|.+|.+.|+...+. .|+..+|+.+..++.+.|+.++|.++.++....
T Consensus 323 ~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 323 QH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 42 224566677777777777777777777766665 467777777777777777777777777666543
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1e-11 Score=113.19 Aligned_cols=384 Identities=13% Similarity=0.041 Sum_probs=258.0
Q ss_pred HhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHH
Q 044044 73 RCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA-GLFPDIYTHSILINC 151 (508)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~ 151 (508)
.|.-.|..+....+.+.|...|.+++..+.. ..+.+..++....-. .++-..+++.+.-. -...+......+...
T Consensus 143 ic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~--c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel 218 (611)
T KOG1173|consen 143 ICYLRGKVYVALDNREEARDKYKEALLADAK--CFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYEL 218 (611)
T ss_pred eeeeeeehhhhhccHHHHHHHHHHHHhcchh--hHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHh
Confidence 3555566777778889999999998887665 555555555543221 12223333321100 012233333333332
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 044044 152 FCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVA 231 (508)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 231 (508)
..-...-+.....-++..-.+...+......-..-+...+++.+..++++...+.. +++...+..-|.++...|+..+-
T Consensus 219 ~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~L 297 (611)
T KOG1173|consen 219 KLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKL 297 (611)
T ss_pred hhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchH
Confidence 21111111111111111112334566666677777788899999999999888764 56677777777788888988888
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLF 311 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 311 (508)
..+=.++.... |....+|.++.--|...|++.+|.+.|.+....+.. =...|......|.-.|.-++|...|
T Consensus 298 f~lsh~LV~~y-------P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 298 FLLSHKLVDLY-------PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred HHHHHHHHHhC-------CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHH
Confidence 88888888874 566788999988888889999999999887654222 2457888888888889999999888
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC----
Q 044044 312 IEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN---- 387 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 387 (508)
...-+. ++-..--+-.+.--|.+.++.+.|.+.|.++.... +.|+..++.+.-.....+.+.+|..+|+.....
T Consensus 370 ~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 370 FTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred HHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 777654 11112222234445778889999999998888552 446778888887777888899999988877632
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044044 388 G--CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYT 465 (508)
Q Consensus 388 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 465 (508)
+ ...-..+++.|+.+|.+.+.+++|+..+++.+....+ +..++.++.-.|...|+++.|++.|.+..- +.||-.+
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~ 524 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIF 524 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHH
Confidence 0 0112345788888999999999999999998887443 788888998899999999999999988875 4677666
Q ss_pred HHHHHHHHH
Q 044044 466 YNNFIDGLC 474 (508)
Q Consensus 466 ~~~li~~~~ 474 (508)
-..++..+.
T Consensus 525 ~~~lL~~ai 533 (611)
T KOG1173|consen 525 ISELLKLAI 533 (611)
T ss_pred HHHHHHHHH
Confidence 666655443
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.3e-11 Score=111.02 Aligned_cols=285 Identities=15% Similarity=0.051 Sum_probs=230.8
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 044044 208 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD 287 (508)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 287 (508)
...+......-..-+...+++.+..++++...+.+ ++....+..-|..+...|+..+-..+=.++.+. .+..
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~ 311 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSK 311 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCC
Confidence 34566667777788889999999999999999986 566777777777899999988888777888776 4557
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 044044 288 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDG 367 (508)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (508)
+.+|-.+.--|...|+..+|.+.|.+....+-. =...|..+...++-.|..|+|...+..+.+.= +-...-+-.+.--
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHH
Confidence 889999998899999999999999987765311 23478888889999999999999998877641 1111223334456
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CCHhHHHHHHHHHHhc
Q 044044 368 YCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK--GIK----PTVVTYNTLFLGLFEI 441 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~ 441 (508)
|.+.++.+.|.+.|.+..... |.|+...+.+.-.....+.+.+|..+|+..+.. .+. --..+++.|..+|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 788999999999999988764 778889999998888999999999999988742 111 1345689999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHHc
Q 044044 442 HQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLID 506 (508)
Q Consensus 442 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 506 (508)
+++++|+..+++.... .+-+..++.++.-.|...|+++.|.+.|++.+ .+.|+..+-..+++
T Consensus 469 ~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred hhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 9999999999999987 34588999999999999999999999999998 67899988777764
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=2.7e-12 Score=126.48 Aligned_cols=252 Identities=12% Similarity=0.040 Sum_probs=173.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---------cCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 121 KHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK---------MGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 191 (508)
Q Consensus 121 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (508)
+++++|+.+|++..+.. +.+...|..+..++.. .+++++|...++++++.. +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 45788999999988763 3344556555554432 234788999999988874 446778888888888899
Q ss_pred CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHH
Q 044044 192 RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDK 271 (508)
Q Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (508)
++++|+..|++....+ +.+...+..+...+...|++++|+..+++..+.++ .+...+..++..+...|++++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-------~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP-------TRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------CChhhHHHHHHHHHhccCHHH
Confidence 9999999999988875 44567788888899999999999999999988652 233333444555667889999
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 272 AKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
|...++++.+...+.+...+..+..++...|++++|...++++.... +.+....+.+...|...| +++...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 99999888765322245556777788888999999999998876541 223334555555667766 477777766655
Q ss_pred cC-CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044044 352 RG-VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG 388 (508)
Q Consensus 352 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (508)
.. ..+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 32 11121222 33344556676666655 7776653
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.54 E-value=7.9e-10 Score=102.58 Aligned_cols=411 Identities=14% Similarity=0.138 Sum_probs=226.8
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR 157 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 157 (508)
.+...++|+...-+..|+.++..-|.......|...+......|-++-++.+|++.++. .| ..-.-.+..+++.++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccc
Confidence 34445678888899999999988876567789999999888999999999999999864 33 346777888889999
Q ss_pred cchHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHhhhcCCCCC--HhhHHHHHHHHHhcC
Q 044044 158 VSHGFVVLGRILRSC------FTPNAVTFTSLIKGLCAESRIM---EAAALFTKHRVFACEPD--VFTYNTLINGLCRTG 226 (508)
Q Consensus 158 ~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 226 (508)
+++|.+.+..++... .+.+...|..+-...++..+.- ....+++.+... -+| ...|+.|.+-|.+.|
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence 999998888776431 1334445555555555443322 222333333322 233 235777777777777
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHH------------------------------------------
Q 044044 227 HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC------------------------------------------ 264 (508)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------ 264 (508)
.+++|.++|++....- .++..|..+.+.|+
T Consensus 263 ~~ekarDvyeeai~~v--------~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTV--------MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred hhHHHHHHHHHHHHhh--------eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 7777777777665432 11222222222221
Q ss_pred ------------------------ccCCHHHHHHHHHHHhhCCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 265 ------------------------KEGFVDKAKELFLKMKDENINP------DVVTYTSVIRGFCYANDWNEAKRLFIEM 314 (508)
Q Consensus 265 ------------------------~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 314 (508)
..|+..+....|.++.+. +.| -...|..+...|-..|+.+.|..+|++.
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 123333333333333322 111 1123444555555556666666666555
Q ss_pred HHcCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------CCC------CHHhHHHHHHHHHcCCCH
Q 044044 315 MDQGVQPD---VVTFSVIMDELCKNGKMDKASRLLELMIWRG-----------VNP------NTYTYNTLIDGYCLTDKI 374 (508)
Q Consensus 315 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~g~~ 374 (508)
.+...+-- ..+|......-.+..+++.|+++++.+...- .++ +...|...++..-..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 54322211 2244444444445555555555555443210 000 112233333433445555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHh---cCCHHHHHHH
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV-TYNTLFLGLFE---IHQVERALKL 450 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~---~g~~~~a~~~ 450 (508)
+....+++++.+..+. .+.........+..+.-++++.++|++-+..-..|+.. .|+..+.-+.+ ..+.+.|..+
T Consensus 494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 6666666666555422 22222222233344555666666666655543334433 45554444432 3468889999
Q ss_pred HHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCH--HHHHHHHc
Q 044044 451 FDEMRRNHVAADTYT--YNNFIDGLCKSGFVLEALELFRAIRDSKYELNI--VSYNCLID 506 (508)
Q Consensus 451 ~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~ 506 (508)
|++..+ |.+|...- |......-.+.|....|+.++++... ++++.. .+|+..|+
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 999988 56655432 22222333456888888888888654 344432 45666553
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=1.6e-09 Score=100.75 Aligned_cols=388 Identities=14% Similarity=0.108 Sum_probs=254.2
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
.+++...+++.+.+++..|. ..++....+-.+...|+-++|.+..+...... .-+.++|..+.-.+....++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~e--HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPE--HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCc--cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 35788889999999988877 66666666667778899999999988887754 4577888888888888889999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
.|..++..+ +.|...|.-+.-.-++.++++.......+..+.. +.....|..++.++.-.|++..|..++++......
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999988875 4577778777777777888888777777766652 33456688888888889999999999988887642
Q ss_pred CCCccccCCHhHHHHHH------HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 244 EFGVVCKPNTVTYNTII------DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 244 ~~~~~~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
..|+...+.... ....+.|..++|.+.+..-... +......-.+-...+.+.+++++|..++..++..
T Consensus 175 -----~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 175 -----TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred -----cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 235555554332 3445677788888777665443 1112222334455677888999999999988886
Q ss_pred CCCCCHHhHHHHHH-HHHhcCChhHHH-HHHHHHHH----------------------------------cCCCCCHHhH
Q 044044 318 GVQPDVVTFSVIMD-ELCKNGKMDKAS-RLLELMIW----------------------------------RGVNPNTYTY 361 (508)
Q Consensus 318 ~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~----------------------------------~~~~~~~~~~ 361 (508)
.||..-|...+. ++.+-.+.-++. .+|....+ .|+++ ++
T Consensus 249 --nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf 323 (700)
T KOG1156|consen 249 --NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VF 323 (700)
T ss_pred --CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hh
Confidence 456655554444 332222322333 44444332 22221 11
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH--------hCC----------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSME--------SNG----------CMHDVVSYN--TLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~--------~~~----------~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
..+...|-. ..++- +++++. ..| -+|....|+ .++..+-..|+++.|..+++..+.
T Consensus 324 ~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 324 KDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhHHHHhc---hhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 122221111 11111 222221 110 144554444 456677788888999888888887
Q ss_pred CCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044044 422 KGIKPT-VVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKY 494 (508)
Q Consensus 422 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 494 (508)
+ .|+ +..|..-.+.+...|++++|..++++..+.+ .+|...-..-.....++++.++|.++.-..-+.|.
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5 344 3355555678888889999988888888764 33554444566667788888888888877776664
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=2.8e-11 Score=119.33 Aligned_cols=251 Identities=15% Similarity=0.050 Sum_probs=153.3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHH
Q 044044 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR---------TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIID 261 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (508)
+.+++|+..|++..... +.+...|..+..++.. .+++++|...+++..+.+ +.+...+..+..
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~ 346 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHH
Confidence 34678888888887763 2245556555554432 234678888888887765 445667777777
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhH
Q 044044 262 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDK 341 (508)
Q Consensus 262 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 341 (508)
.+...|++++|...|+++.+.+ +.+...+..+...+...|++++|+..+++..+... .+...+..++..+...|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP-TRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhccCHHH
Confidence 7778888888888888877763 22455667777777788888888888888777531 122233333444556777777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 342 ASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
|...++++.+...+.+...+..+..++...|+.++|...+.++.... +.+....+.+...|...| ++|...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 87777777655322234456666677777788888887777765542 223344455555566666 366666666554
Q ss_pred C-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 422 K-GIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 422 ~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
. ...+....+ +...+.-.|+.+.+..+ +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3 111222222 33334445555555555 666554
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=7.1e-11 Score=101.62 Aligned_cols=396 Identities=13% Similarity=0.108 Sum_probs=202.1
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
.++..|+.+++.....+.. -...+-..+..++.+.|++++|+..|..+.+.. .++...+..|.-+..-.|.+.+|..+
T Consensus 36 rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 3556666666555433322 111122234445556666666666666655433 44444454454444445555555544
Q ss_pred HHHHHhC--------------C-----------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHH-H
Q 044044 165 LGRILRS--------------C-----------FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNT-L 218 (508)
Q Consensus 165 ~~~~~~~--------------~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l 218 (508)
-.+..+. + ......---+|.......-.+++|+++|.+.... .|+-...|. +
T Consensus 114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ 191 (557)
T KOG3785|consen 114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYM 191 (557)
T ss_pred HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHH
Confidence 4332110 0 0001111222333333334566777777776654 334334443 3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHcc--CCHHHHH--H----------HHHHHhhCC-
Q 044044 219 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKE--GFVDKAK--E----------LFLKMKDEN- 283 (508)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~--~----------~~~~~~~~~- 283 (508)
.-+|.+..-++.+.++++-....- +.+....|..+....+. |+..+.+ + ..+.+.+++
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~-------pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQF-------PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhC-------CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 334556666666777666666542 22333333333322221 2111110 0 111111110
Q ss_pred -----------CCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-------hh
Q 044044 284 -----------INP-----DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK-------MD 340 (508)
Q Consensus 284 -----------~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~ 340 (508)
+-| -+.....|+--|.+.+++.+|..+.+++.- ..|-......+ .....|+ ..
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgv--v~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGV--VFAALGQETGSREHLK 340 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHH--HHHHhhhhcCcHHHHH
Confidence 000 122233444456677777777777655421 12222222211 2223332 33
Q ss_pred HHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
-|.+.|...-+++..-| ..--.++...+.-..++++....++.+..--...|...+ .+..+++..|++.+|+++|-++
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhh
Confidence 44555544433333222 222333444444556778888888777765333344444 4678889999999999999777
Q ss_pred HHCCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCccC
Q 044044 420 LSKGIKPTVVTY-NTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYN-NFIDGLCKSGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 420 ~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
....++ |..+| ..|.++|.+.++++.|++++-++. -+.+..... .+..-|.+++.+--|-+.|..+.. ..|+
T Consensus 420 s~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~ 493 (557)
T KOG3785|consen 420 SGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPT 493 (557)
T ss_pred cChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCC
Confidence 665555 44555 567788899999999988765543 233444433 444568889998888888888874 4676
Q ss_pred HHHHH
Q 044044 498 IVSYN 502 (508)
Q Consensus 498 ~~~~~ 502 (508)
.+.|.
T Consensus 494 pEnWe 498 (557)
T KOG3785|consen 494 PENWE 498 (557)
T ss_pred ccccC
Confidence 66654
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=5.6e-12 Score=107.11 Aligned_cols=230 Identities=14% Similarity=0.037 Sum_probs=178.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
+.+.++|.+.|.+.+|.+.|+...+. .|-+.||..|-+.|.+..++..|+.++.+-.+. .+-|+....-+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-------fP~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-------FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-------CCchhhhhhhhH
Confidence 56778888888888888888877765 667778888888888888888888888887775 344555555677
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 044044 261 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD 340 (508)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (508)
+.+-..++.++|.++|....+.. +.++.....+...|.-.++++.|+..|+.+++.|+. +...|+.+.-+|.-.+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 77888888888888888887752 335666666677777888888888888888888854 6777888888888888888
Q ss_pred HHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSE 418 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (508)
-++.-|.++...-..|+ ..+|..+.......|++..|.+.|+-...++ ..+...+|.|...-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 88888888776544444 4567777777778888888888888887765 45667788888888888888888888887
Q ss_pred HHHC
Q 044044 419 MLSK 422 (508)
Q Consensus 419 ~~~~ 422 (508)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 7664
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=4.4e-09 Score=97.94 Aligned_cols=392 Identities=15% Similarity=0.122 Sum_probs=260.7
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 76 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
-.|..+...|+-++|.......++.++. +...|+.++-.+...+++++|++.|+.+...+ +.|...|..+.-.-++.
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Qm 122 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQM 122 (700)
T ss_pred hccchhhcccchHHHHHHHHHHhccCcc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHH
Confidence 3466677889999999999999887776 88999999999999999999999999998865 55677777777667777
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC-CCCCHhhHHHHH------HHHHhcCCh
Q 044044 156 GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA-CEPDVFTYNTLI------NGLCRTGHT 228 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~ 228 (508)
++++-....-...++.. +.....|..++.++.-.|+...|..+++...+.. ..|+...+.... ....+.|..
T Consensus 123 Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 88887777766666542 2345567778888888899999999988877654 235555444332 334567778
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHHhcCCHHHH
Q 044044 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVI-RGFCYANDWNEA 307 (508)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a 307 (508)
++|++.+...... +......-..-...+.+.+++++|..+|..+... .||...|.-.+ .++.+-.+.-++
T Consensus 202 q~ale~L~~~e~~-------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 202 QKALEHLLDNEKQ-------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred HHHHHHHHhhhhH-------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHH
Confidence 8888877765543 1222333345567778888999999999888876 45555544433 333222222222
Q ss_pred H-HHHHHH----------------------------------HHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-
Q 044044 308 K-RLFIEM----------------------------------MDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIW- 351 (508)
Q Consensus 308 ~-~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 351 (508)
. .+|... .+.|+++ ++..+...|-.....+ ++++.+.
T Consensus 273 lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~ 345 (700)
T KOG1156|consen 273 LKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTS 345 (700)
T ss_pred HHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHH
Confidence 2 333332 3333322 2222222222211111 2222211
Q ss_pred -------cC----------CCCCHH--hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 044044 352 -------RG----------VNPNTY--TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHD-VVSYNTLINWYCKNKDVEE 411 (508)
Q Consensus 352 -------~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 411 (508)
.| -+|... ++-.+++.|-+.|+++.|..+++..+.+ .|+ +..|..-.+.+...|++++
T Consensus 346 y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 346 YQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred HHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHH
Confidence 11 134443 4455678899999999999999999987 454 4566677789999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH--HHHHHHhcCCHHHHH
Q 044044 412 ALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVA--AD----TYTYNN--FIDGLCKSGFVLEAL 483 (508)
Q Consensus 412 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~--li~~~~~~g~~~~A~ 483 (508)
|..++++..+.. .+|...-..-+.-..+.++.++|.++.....+.|.. .+ .-.|-. -..+|.+.|++-.|+
T Consensus 424 Aa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 424 AAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL 502 (700)
T ss_pred HHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH
Confidence 999999999874 345554445666677899999999999988877641 11 112222 234678888888887
Q ss_pred HHHHHHH
Q 044044 484 ELFRAIR 490 (508)
Q Consensus 484 ~~~~~m~ 490 (508)
+-|..+.
T Consensus 503 Kkfh~i~ 509 (700)
T KOG1156|consen 503 KKFHEIE 509 (700)
T ss_pred HHHhhHH
Confidence 7666554
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=8.5e-11 Score=103.28 Aligned_cols=200 Identities=13% Similarity=0.033 Sum_probs=133.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 044044 288 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDG 367 (508)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (508)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3445556666666677777777766666542 33445566666667777777777777776665532 244556666667
Q ss_pred HHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 044044 368 YCLTDKIDHARKLFVSMESNGC-MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVER 446 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 446 (508)
+...|++++|.+.++++.+... +.....+..+...+...|++++|...+.+..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665421 223445666677777888888888888877775322 45567777777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 447 ALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
|...+++..+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888877765 344556666677777788888888887777654
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=9e-10 Score=99.01 Aligned_cols=366 Identities=13% Similarity=0.034 Sum_probs=235.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 044044 110 FNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPN-AVTFTSLIKGL 187 (508)
Q Consensus 110 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 187 (508)
+.....-+.++|++++|++.|...++. .|| +.-|.....+|...|++++..+...+.++.+ |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 344556678899999999999999985 677 6677888888999999999998888887653 32 33455555667
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHH---
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC--- 264 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 264 (508)
-..|++.+|+.-..-.--.+.-.|..+--.+=+.+-+ .|.+-.++-...++ ..+-|...........+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr---~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENR---PPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccC---CCCCCcHHHHHHHHhhccccc
Confidence 7778888776533322211111122111111111111 12222222222110 002333333222222211
Q ss_pred --------------------c--cC---CHHHHHHHHHHHhhC---CCCCC---------hhhHHHHHHHHHhcCCHHHH
Q 044044 265 --------------------K--EG---FVDKAKELFLKMKDE---NINPD---------VVTYTSVIRGFCYANDWNEA 307 (508)
Q Consensus 265 --------------------~--~g---~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~g~~~~a 307 (508)
. .+ .+..|...+.+-... ....+ ..+...-...+.-.|+...|
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 0 11 233333333222111 01111 11122222233446888899
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044044 308 KRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN 387 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (508)
.+-|+..+.....+ ...|..+..+|....+.++....|..+.+.+.. ++.+|..-.+++.-.+++++|..-|++.++.
T Consensus 346 ~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998875333 333777888899999999999999999987543 6778888888888899999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCC
Q 044044 388 GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHV-----AAD 462 (508)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~ 462 (508)
+ +-+...|-.+..+..+.+.+++++..|++..++ ++..+..|+.....+..+++++.|.+.|+..++... ..+
T Consensus 424 ~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 424 D-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred C-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 6 556777888888888999999999999999987 455678899999999999999999999999986421 112
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 463 TY--TYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 463 ~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
.. +-..++. +.-.+++..|.+++++.++.
T Consensus 502 ~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 502 AAPLVHKALLV-LQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred chhhhhhhHhh-hchhhhHHHHHHHHHHHHcc
Confidence 22 2222222 22348999999999999854
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=9.8e-11 Score=102.90 Aligned_cols=203 Identities=13% Similarity=0.074 Sum_probs=170.6
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 044044 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIM 330 (508)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (508)
.....+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 345678888999999999999999999998763 3356788888999999999999999999998864 44566788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 331 DELCKNGKMDKASRLLELMIWRGVN-PNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV 409 (508)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (508)
..+...|++++|...++.+...... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 8999999999999999999875322 235567778889999999999999999998874 44677888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 410 EEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
++|...+++..+. .+.+...+..++..+...|+.++|..+.+.+.+.
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999887 3446677778888899999999999998887653
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.3e-09 Score=98.67 Aligned_cols=398 Identities=13% Similarity=0.089 Sum_probs=222.3
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|++++|.+..++++...|. +..++..-+-++.+.++|++|+.+.+.-... ..+..-+.--..+..+.+..++|+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHH
Confidence 567999999999999999877 7888888899999999999999666553211 111111112223344789999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHh--hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVF--TYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
..++-.. +.+..+...-...+.+.|++++|+.+|+.+.+.+.+ +.. .-..++.+- ---.+. +.+....
T Consensus 100 k~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~----a~l~~~-~~q~v~~ 169 (652)
T KOG2376|consen 100 KTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVA----AALQVQ-LLQSVPE 169 (652)
T ss_pred HHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH----HhhhHH-HHHhccC
Confidence 9888322 223446666677888999999999999999766422 221 111121111 111111 1222211
Q ss_pred CCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-------C-CC-CC-----hhhHHHHHHHHHhcCCHHH
Q 044044 241 GNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-------N-IN-PD-----VVTYTSVIRGFCYANDWNE 306 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~-~~-~~-----~~~~~~l~~~~~~~g~~~~ 306 (508)
. ...+-..+....-.+...|+|.+|+++++...+. + .. -+ ...-..+...+-..|+.++
T Consensus 170 v-------~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 170 V-------PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred C-------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1 0111222333445566788999999998887321 1 00 00 0112334556667899999
Q ss_pred HHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCChhH--HHHHHH------------HH-------------------
Q 044044 307 AKRLFIEMMDQGVQPDVVTF----SVIMDELCKNGKMDK--ASRLLE------------LM------------------- 349 (508)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~--a~~~~~------------~~------------------- 349 (508)
|..+|...++.. .+|.... |.++. .....++-. ++..++ .+
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888764 3333211 11111 111100000 000000 00
Q ss_pred ---------HHc--CCCCCHHhHHHHHHHHH--cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 350 ---------IWR--GVNPNTYTYNTLIDGYC--LTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLY 416 (508)
Q Consensus 350 ---------~~~--~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (508)
... +..|. ..+..++.... +...+.++.+++...-+........+.-.++......|+++.|++++
T Consensus 321 nk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 000 11222 22333332222 22246667777776665542233455556677778889999999988
Q ss_pred H--------HHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 044044 417 S--------EMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN------HVAADTYTYNNFIDGLCKSGFVLEA 482 (508)
Q Consensus 417 ~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A 482 (508)
. .+.+.+..|. +...+...+.+.++.+.|..++.+..+. +-.--..++..++..-.+.|+.++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 8 4555444443 4455666677777766666666655431 1111122333344444567888999
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHcc
Q 044044 483 LELFRAIRDSKYELNIVSYNCLIDG 507 (508)
Q Consensus 483 ~~~~~~m~~~g~~p~~~~~~~ll~~ 507 (508)
..+++++.+.. .+|..+...++.+
T Consensus 478 ~s~leel~k~n-~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 478 SSLLEELVKFN-PNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHHHHHhC-CchHHHHHHHHHH
Confidence 99999988643 5566666666654
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=8.4e-10 Score=105.19 Aligned_cols=127 Identities=17% Similarity=0.055 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 441 (508)
..+.+.|...|++++|.+++++.+++. |..+..|..-...+-+.|++++|.+.++........ |...-+..+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 444555556666666666666666653 223555666666666666666666666666655433 444445555556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 442 HQVERALKLFDEMRRNHVAADTY--------TYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 442 g~~~~a~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
|++++|.+++....+.+..|... .......+|.+.|++..|++.|..+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666555544322111 11334455666666666665555443
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=1.7e-09 Score=103.15 Aligned_cols=290 Identities=13% Similarity=0.092 Sum_probs=157.6
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh-----
Q 044044 150 NCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR----- 224 (508)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 224 (508)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+...+ +.|..-|..+..+...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3344555555555555443322 22223344445555566666666666666666553 2223333333333311
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHH-HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 044044 225 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVD-KAKELFLKMKDENINPDVVTYTSVIRGFCYAND 303 (508)
Q Consensus 225 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (508)
..+.+....+|+++.... |.......+.-.+.....+. .+..++..+..+|++ .+|+.|-..|....+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred cccHHHHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 124555666666665543 22222222211112212222 334444555666643 245555555555555
Q ss_pred HHHHHHHHHHHHHc----C----------CCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHH
Q 044044 304 WNEAKRLFIEMMDQ----G----------VQPDV--VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLID 366 (508)
Q Consensus 304 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 366 (508)
.+-..+++...... + -+|.. .++..+...|...|++++|+...+..++. .|+ +..|..-.+
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 55555555554322 0 12333 23455566677778888888888777766 334 566777777
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH--------HHHHHHHH
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVT--------YNTLFLGL 438 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--------~~~l~~~~ 438 (508)
.+-+.|++++|.+.++.....+ .-|...-+-.+..+.+.|++++|.+++......+..|.... ......+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 7777888888888777777765 44566666666777777888888877777766553332211 13345677
Q ss_pred HhcCCHHHHHHHHHHHH
Q 044044 439 FEIHQVERALKLFDEMR 455 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~ 455 (508)
.+.|++..|++.|..+.
T Consensus 316 ~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 77777777777666554
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=2.4e-11 Score=103.29 Aligned_cols=265 Identities=14% Similarity=0.087 Sum_probs=209.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCC---CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 044044 222 LCRTGHTIVALNLFEEMANGNG---EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGF 298 (508)
Q Consensus 222 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (508)
|...+|+..|-.......+... ........|-.--+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-..|
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY 266 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVY 266 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHH
Confidence 4456666666654444332211 000001122222367889999999999999999998876 45677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHH
Q 044044 299 CYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHAR 378 (508)
Q Consensus 299 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (508)
.+..+++.|+.++.+-++. .+.|......+...+-..++.++|.++++...+.. +.++.....+...|.-.++.+-|+
T Consensus 267 ~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred HHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHH
Confidence 9999999999999998886 34444444556778888999999999999999874 446777777888888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 379 KLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.+++++.+.| ..++..|+.+.-+|.-.+++|-++..|++....--.|+ ...|..+.......||+..|.+.|+-...
T Consensus 345 ryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 345 RYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 9999999999 55888999999999999999999999999887633333 45788888889999999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 457 NHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 457 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
.+. .+...++.|.-.-.+.|++++|..+++...+.
T Consensus 424 ~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 424 SDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 643 36778999988889999999999999998753
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=7.2e-09 Score=91.37 Aligned_cols=302 Identities=13% Similarity=0.028 Sum_probs=216.5
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHHHhhhcC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH
Q 044044 179 TFTSLIKGLCA--ESRIMEAAALFTKHRVFA-CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT 255 (508)
Q Consensus 179 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (508)
.....+.+++. .++...|...+--+.... .+-|+.....+.+++...|+.++|+..|++....+ +-++..
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-------py~i~~ 268 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-------PDNVEA 268 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-------hhhhhh
Confidence 33333444433 344444444443333322 35567788899999999999999999999988765 233444
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 044044 256 YNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK 335 (508)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (508)
.....-.+.+.|+++....+...+.... ..+...|-.-.......++++.|+.+-++.++.. +-+...|..-..++..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 4444555677888888888887776542 2234445555555667789999999998888763 2244455555667888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHH
Q 044044 336 NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLI-NWYC-KNKDVEEAL 413 (508)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~ 413 (508)
.+++++|.-.|+.++... +-+..+|..|+..|...|++.+|.-+-+...+. ++.+..+.+.+. ..+. ...--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999888652 346889999999999999999998877666554 245666666663 3333 233457888
Q ss_pred HHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 414 SLYSEMLSKGIKPT-VVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 414 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
++++..+.. .|+ ....+.+...|...|+.+.++.++++... ..||...-+.|.+.+...+.+++|.+.|...++
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr- 499 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR- 499 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 898888775 444 34567788889999999999999999887 468999999999999999999999999998875
Q ss_pred CCccC
Q 044044 493 KYELN 497 (508)
Q Consensus 493 g~~p~ 497 (508)
+.|+
T Consensus 500 -~dP~ 503 (564)
T KOG1174|consen 500 -QDPK 503 (564)
T ss_pred -cCcc
Confidence 3454
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=1.6e-10 Score=108.65 Aligned_cols=238 Identities=21% Similarity=0.176 Sum_probs=178.3
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhC-----CC-CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDE-----NI-NPDVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQ-----GV- 319 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~- 319 (508)
..+...+...|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666999999999999999999887654 21 22222 2344677888999999999999998753 21
Q ss_pred CC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhC---C
Q 044044 320 QP-DVVTFSVIMDELCKNGKMDKASRLLELMIWR-----GV-NPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESN---G 388 (508)
Q Consensus 320 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 388 (508)
.| -..+++.|..+|.+.|++++|...++.+.+- +. .|. ...++.++..+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 2347788888999999999999888776542 21 222 234666778888999999999999876542 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 044044 389 CMH----DVVSYNTLINWYCKNKDVEEALSLYSEMLSK----GI--KP-TVVTYNTLFLGLFEIHQVERALKLFDEMRR- 456 (508)
Q Consensus 389 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 456 (508)
+.+ -..+++.|...|...|++++|.+++++++.. +. .+ ....++.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2457899999999999999999999998764 11 12 244678899999999999999999977542
Q ss_pred ---CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 457 ---NHV--AADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 457 ---~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.|. +....+|..|...|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 232 2335689999999999999999999988876
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=1.4e-08 Score=96.64 Aligned_cols=377 Identities=15% Similarity=0.059 Sum_probs=264.8
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCH-HhHHHH
Q 044044 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNA-VTFTSL 183 (508)
Q Consensus 105 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l 183 (508)
.+...|..+.-++...|+++.+.+.|++.... ..-....|..+...+...|.-..|..+++........|+. ..+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 37788999999999999999999999998764 3446778999999999999999999999887655323433 333333
Q ss_pred HHHHH-hcCCHHHHHHHHHHhhhc--CC--CCCHhhHHHHHHHHHhc-----------CChHHHHHHHHHHHhCCCCCCc
Q 044044 184 IKGLC-AESRIMEAAALFTKHRVF--AC--EPDVFTYNTLINGLCRT-----------GHTIVALNLFEEMANGNGEFGV 247 (508)
Q Consensus 184 ~~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~ 247 (508)
-..|. +.+.+++++.+-.++... +. ......|..+.-+|... ....++++.+++..+.++
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~---- 475 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP---- 475 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC----
Confidence 34443 447788888877776652 11 22344565555555432 234578889999988763
Q ss_pred cccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC------
Q 044044 248 VCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQ------ 320 (508)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~------ 320 (508)
..|++. ..+.--|+..++.+.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 476 -~dp~~i--f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 476 -TDPLVI--FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred -CCchHH--HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 234333 3344556778899999999999988866678889999998999999999999999877653 210
Q ss_pred ------------CCHHhHHHHHHHHHhc---------C--------------ChhHHHHHHHHH----HH----cC----
Q 044044 321 ------------PDVVTFSVIMDELCKN---------G--------------KMDKASRLLELM----IW----RG---- 353 (508)
Q Consensus 321 ------------~~~~~~~~l~~~~~~~---------~--------------~~~~a~~~~~~~----~~----~~---- 353 (508)
.-..|...++..+-.. | +..++......+ .. .+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 0012333333322200 0 111111111110 00 01
Q ss_pred -----C--CCC------HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 354 -----V--NPN------TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 354 -----~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
. .|+ ...|......+.+.+..++|...+.+..... +.....|...+..+...|.+++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 0 111 1234455567778888899988888887653 5677778888888999999999999999998
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALK--LFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
..++. ++...+++..++...|+...|.. ++.++.+.+. .+...|..+...+.+.|+.++|.+.|....+.
T Consensus 712 ~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 86433 56688999999999999888888 9999999754 48899999999999999999999999998754
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=2.3e-10 Score=107.61 Aligned_cols=243 Identities=19% Similarity=0.131 Sum_probs=179.7
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCccccCCHhH-HHHHHHHHHccCCHHHHHHHHHHHhhC-----CC
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANGN-GEFGVVCKPNTVT-YNTIIDGLCKEGFVDKAKELFLKMKDE-----NI 284 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~ 284 (508)
..+...+...|...|++++|+.+++.....- ..+|. ..|.+.+ .+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 4466668999999999999999998877651 01111 2344443 344788899999999999999998643 22
Q ss_pred C--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHc---
Q 044044 285 N--PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----GVQ-PDV-VTFSVIMDELCKNGKMDKASRLLELMIWR--- 352 (508)
Q Consensus 285 ~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 352 (508)
. .-..+++.|...|.+.|++++|...++...+. |.. +.. ..++.+...+...+++++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1 12456778888999999999999888876542 211 222 24566777888999999999998876542
Q ss_pred CCCCC----HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 353 GVNPN----TYTYNTLIDGYCLTDKIDHARKLFVSMESNG----C---MHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 353 ~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
-+.++ ..+++.|...|...|++++|.+++++++... . .-....++.+...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11222 4689999999999999999999999886531 1 12245678889999999999999999987654
Q ss_pred C----CCC-C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 422 K----GIK-P-TVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 422 ~----~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
. |+. | ...+|..|...|...|+++.|+++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 322 2 34588999999999999999999998776
No 72
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=5e-10 Score=107.57 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=68.6
Q ss_pred HHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 044044 94 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCF 173 (508)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 173 (508)
+..+...+.. |+..+|..+|.-|+..|+.+.|- +|..|.....+.....++.++....+.++.+.+.
T Consensus 13 la~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 13 LALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3344444555 77888888888888888888888 8888877776777778888888888888777665
Q ss_pred CCCHHhHHHHHHHHHhcCCHHH
Q 044044 174 TPNAVTFTSLIKGLCAESRIME 195 (508)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~ 195 (508)
.|-+.+|+.|..+|...|++..
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 5677888888888888888654
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=1e-10 Score=112.09 Aligned_cols=276 Identities=16% Similarity=0.180 Sum_probs=183.6
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
..+-.+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.....+.+...++.++.+....|+.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34555666777888888888888888888877777 7777776666667777777777777777655543
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMD-QGVQP 321 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~ 321 (508)
.|...+|..|..+|...||... |+...+ ..-.+...+...|.-..-..++..+.- .+.-|
T Consensus 80 -------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lp 140 (1088)
T KOG4318|consen 80 -------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLP 140 (1088)
T ss_pred -------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccch
Confidence 2456677888888888877665 333222 122334455556655555555544322 23344
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044044 322 DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT-DKIDHARKLFVSMESNGCMHDVVSYNTLI 400 (508)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (508)
|..+ .+....-.|-++.+.+++..+...... .+... +++-+... ..+++-..+.+...+ .++..+|..++
T Consensus 141 da~n---~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l 211 (1088)
T KOG4318|consen 141 DAEN---AILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVL 211 (1088)
T ss_pred hHHH---HHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHH
Confidence 4433 333445566677777776555433211 11111 24333332 234444444444433 58999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVL 480 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 480 (508)
.+-...|+.+.|..++.+|.+.|++.+.+-|..|+-+ .++...++.+++.|.+.|+.|+..|+.-.+..+..+|...
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 9999999999999999999999998888878777655 8888999999999999999999999988887777766533
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=4.8e-10 Score=91.11 Aligned_cols=195 Identities=12% Similarity=-0.008 Sum_probs=144.6
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 76 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
..|.+|+..|++..|..-++++++.+|. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|...-.+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 4566778888999999999999888887 78888888888888888888888888888764 44666777777788888
Q ss_pred CCcchHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 044044 156 GRVSHGFVVLGRILRSC-FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNL 234 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 234 (508)
|++++|.+.|++.+... +..-..+|..+.-+..+.|+++.|...|++..... +....+...+.....+.|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888877642 22334567777777777788888888888777664 22345666677777778888888888
Q ss_pred HHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 235 FEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
++.....+ .++....-..|..--..|+-+.+.++=..+.+
T Consensus 196 ~~~~~~~~-------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRG-------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcc-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 87777765 36666666667777777777766665555544
No 75
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=5.4e-07 Score=84.33 Aligned_cols=394 Identities=13% Similarity=0.096 Sum_probs=224.3
Q ss_pred HHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCcchHHHHHH
Q 044044 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA-GLFPDIYTHSILINCFCKMGRVSHGFVVLG 166 (508)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 166 (508)
+..-..|+..+..... =+..|-..+..+.++|++-.....|++.+.. .+......|...+......|-++.+..+++
T Consensus 85 ~~vn~c~er~lv~mHk--mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyr 162 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMHK--MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYR 162 (835)
T ss_pred HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHH
Confidence 3334444444432222 3447888888889999999999999987654 233355678888888888999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc------CCCCCHhhHHHHHHHHHhcCCh---HHHHHHHHH
Q 044044 167 RILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF------ACEPDVFTYNTLINGLCRTGHT---IVALNLFEE 237 (508)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~ 237 (508)
+.++. ++..-+-.+..+++.+++++|-+.+...... ..+.+...|..+-+...+.-+. -....+++.
T Consensus 163 RYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~ 238 (835)
T KOG2047|consen 163 RYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRG 238 (835)
T ss_pred HHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHh
Confidence 99865 4445777888889999999999999876543 1234556677766666554332 234455566
Q ss_pred HHhCCCCCCccccCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc--------------
Q 044044 238 MANGNGEFGVVCKPN--TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYA-------------- 301 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 301 (508)
+..+. +| ...|..|.+.|.+.|.++.|..+|++....- .++.-|..+..+|.+-
T Consensus 239 gi~rf--------tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~ 308 (835)
T KOG2047|consen 239 GIRRF--------TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADE 308 (835)
T ss_pred hcccC--------cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 55543 33 4589999999999999999999999987652 2333344443333321
Q ss_pred --C------CHHHHHHHHHHHHHcC-------------------------------------------CCCC------HH
Q 044044 302 --N------DWNEAKRLFIEMMDQG-------------------------------------------VQPD------VV 324 (508)
Q Consensus 302 --g------~~~~a~~~~~~~~~~~-------------------------------------------~~~~------~~ 324 (508)
| +++-....|+.+...+ +.|. ..
T Consensus 309 ~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 309 ESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGT 388 (835)
T ss_pred cccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhh
Confidence 1 1122222333322221 1110 11
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----------CC
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPN---TYTYNTLIDGYCLTDKIDHARKLFVSMESNG-----------CM 390 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~ 390 (508)
.|..+.+.|-..|+.+.|..+|++..+-..+-- ..+|..-..+-.+..+++.|.++++.....- .+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 344444455555555555555555544322111 2233333444444455555555554443210 00
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 044044 391 ------HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD-T 463 (508)
Q Consensus 391 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 463 (508)
.+...|...++.-...|-++....+|+++++..+. ++........-+..+.-++++.+++++-+..=..|+ .
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 01223444444444455555555555555554332 222222222333344445666666655444322333 3
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCccCHH
Q 044044 464 YTYNNFIDGLCK---SGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 464 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
..|+..+..+.+ .-..+.|..+|++.++ |..|...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 466666655543 2368899999999988 6666554
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=3e-12 Score=80.80 Aligned_cols=48 Identities=42% Similarity=0.747 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHHccC
Q 044044 461 ADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508 (508)
Q Consensus 461 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 508 (508)
||..+|+.+|++|++.|++++|.++|++|.+.|+.||..||++||++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 566666666666666666666666666666666666666666666654
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.7e-08 Score=91.01 Aligned_cols=370 Identities=12% Similarity=0.089 Sum_probs=209.3
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 76 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
.-|...++.|+++.|+.+|.+++...|. |...|..-..+|...|++++|++=-.+.++.. +.-...|.....++.-.
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhc
Confidence 3455667889999999999999999887 99999999999999999999998887777653 33466899999999999
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH------HHhhhc---CCCCCHhhHHHHHHHHHh--
Q 044044 156 GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALF------TKHRVF---ACEPDVFTYNTLINGLCR-- 224 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~~~~~---~~~~~~~~~~~l~~~~~~-- 224 (508)
|++++|+..|.+-++.. +.|...++.+..++.... ++.+.| ..+... ........|..++..+-+
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999888763 335556666666652110 000000 000000 000000011111111100
Q ss_pred --------cCChHHHHHHHHHHH-----hCC---------C------CCCc--c------ccCCHhHHHHHHHHHHccCC
Q 044044 225 --------TGHTIVALNLFEEMA-----NGN---------G------EFGV--V------CKPNTVTYNTIIDGLCKEGF 268 (508)
Q Consensus 225 --------~g~~~~A~~~~~~~~-----~~~---------~------~~~~--~------~~~~~~~~~~l~~~~~~~g~ 268 (508)
-.....|.-.+.... ..+ + .+.. . ...-..-...++....+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 000000000000000 000 0 0000 0 01122334556666666666
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH-------HHHHHHHhcCChhH
Q 044044 269 VDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFS-------VIMDELCKNGKMDK 341 (508)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~ 341 (508)
++.|.+.+....+.. -+..-++....+|...|.+.++...-....+.|-. ...-|+ .+..+|.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 677777666666543 24444555555666666666665555555444321 111122 22234445556666
Q ss_pred HHHHHHHHHHcCCCCCHHh-------------------------HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044044 342 ASRLLELMIWRGVNPNTYT-------------------------YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSY 396 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (508)
++..|.+.+.....|+... ...-...+.+.|++..|+..|.++++.. +.|...|
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 6666666554433322211 1111344556677777777777777765 5677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
....-+|.+.|.+..|++-.+..++.. ++....|..=..++....++++|.+.|++..+.
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777777777777766652 223445555566666667777777777777765
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.29 E-value=5.4e-09 Score=94.44 Aligned_cols=217 Identities=11% Similarity=-0.029 Sum_probs=125.9
Q ss_pred ChHHHHHHHHHhHHcCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
..+.++.-+.+++...+..| ....|..+...+...|++++|+..|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566667777765443211 23457777777778888888888888887754 4456777777777788888888888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
.|++.++.. +.+..+|..+...+...|++++|++.|++..... |+..........+...+++++|...|++.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 887777653 2245566667777777777777777777776653 322211111222334567777777776544332
Q ss_pred CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC---CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 244 EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE---NI---NPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
.++...+ .+. ....|+..++ +.++.+.+. .. +.....|..+...+.+.|++++|+..|++..+.
T Consensus 196 ------~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 ------DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ------CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2222211 122 2223444333 233333321 00 012245666666666667777777777666654
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=7.3e-09 Score=93.60 Aligned_cols=96 Identities=16% Similarity=0.047 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 293 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (508)
.|..+...+...|++++|...|++..+.+ +.+...|+.+...+...|++++|.+.|++..+.. +-+...|..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~ 137 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLN 137 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34455555555555555555555555543 2344555555555555555555555555555432 112344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 294 VIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 294 l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
+...+...|++++|.+.++...+.
T Consensus 138 lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 138 RGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555555555555555555555543
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=9.3e-08 Score=82.50 Aligned_cols=310 Identities=11% Similarity=0.049 Sum_probs=175.6
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHh
Q 044044 76 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTH-SILINCFCK 154 (508)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 154 (508)
..|..++..|++.+|+..|..+++.+|. +-.++-.-...|...|+...|+.=+.+.++. +||-..- ..-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 3455566778899999999999888776 6667777778888889999999888888875 6775432 223356778
Q ss_pred cCCcchHHHHHHHHHhCCCCCCH--Hh------------HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHH
Q 044044 155 MGRVSHGFVVLGRILRSCFTPNA--VT------------FTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLIN 220 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~--~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 220 (508)
.|.+++|..-|+.+++.....+. .. ....+..+...|+...|+.....+.+.. +-|...|..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 89999999999988876421111 11 1112222334455555555555555443 334455555555
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY 300 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (508)
+|...|++..|+.=++...+.. ..+...+..+-..+...|+.+.++...++..+. .||...+-. .|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~---~Y-- 263 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP---FY-- 263 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH---HH--
Confidence 5555555555555554444432 233444444555555555555555555555442 233211100 00
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---hHHHHHHHHHcCCCHHHH
Q 044044 301 ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTY---TYNTLIDGYCLTDKIDHA 377 (508)
Q Consensus 301 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A 377 (508)
....+....++. +......+++.++.+-.+...+........ .+..+-.++...|++.+|
T Consensus 264 -KklkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 264 -KKLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred -HHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 001111111111 112334455666666666665553221222 233344555666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 378 RKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
++...++.+.. +.|+.++..-..+|.-...++.|+.-|+.+.+.
T Consensus 327 iqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 327 IQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777776653 334667777777777777777777777777765
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=1.2e-08 Score=83.09 Aligned_cols=198 Identities=13% Similarity=0.013 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHH
Q 044044 180 FTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTI 259 (508)
Q Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (508)
...|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..... +.+..+.|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNNY 109 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhhh
Confidence 4445566677777777777777776653 3345566677777777777777777777776654 3455666777
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 044044 260 IDGLCKEGFVDKAKELFLKMKDENI-NPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK 338 (508)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (508)
...+|..|++++|...|++...... .-...+|..+.-+..+.|+++.|...|++.++.. +-...+...+.....+.|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc
Confidence 7777777777777777777665411 1123456666666666777777777777766653 2233455556666666777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044044 339 MDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN 387 (508)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (508)
+-.|...++.....+. ++....-..|+.-...|+-+.+.+.=.++.+.
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777766665544 56666666666666667766666655555443
No 82
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=2e-11 Score=77.01 Aligned_cols=47 Identities=60% Similarity=0.926 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.26 E-value=9.5e-08 Score=89.78 Aligned_cols=199 Identities=12% Similarity=0.027 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH--HhHHHHHHHHH
Q 044044 293 SVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGV-NPNT--YTYNTLIDGYC 369 (508)
Q Consensus 293 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~ 369 (508)
.+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+... .++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33445555566666666666655542 22334455555556666666666666655554321 1121 23334555566
Q ss_pred cCCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHH-HHCCC-CCCHhHHHHHHHHHHhc
Q 044044 370 LTDKIDHARKLFVSMESNGC-MHDVVSY-N--TLINWYCKNKDVEEALSL--YSEM-LSKGI-KPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~~~~-~~~~~-~p~~~~~~~l~~~~~~~ 441 (508)
..|++++|..+++++..... .+..... + .++..+...|..+.+.+. +... ..... ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 66666666666666543221 0111111 1 112222333322222222 1111 11000 01111222455666777
Q ss_pred CCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 442 HQVERALKLFDEMRRNHVA--------ADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 442 g~~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
|+.+.|..+++.+...... ...........++...|++++|.+.+.+....
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7788888887776643111 01112222333456788888888888877643
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=6.5e-08 Score=92.20 Aligned_cols=363 Identities=12% Similarity=0.005 Sum_probs=248.4
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHH-hcCCcch
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFC-KMGRVSH 160 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~g~~~~ 160 (508)
..|+++.+.+.|++....--. ..+.|+.+...+...|.-..|+.+++......-.|+ ...+...-..|. +.+.+++
T Consensus 335 ~~g~f~~lae~fE~~~~~~~~--~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee 412 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFSFG--EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE 412 (799)
T ss_pred HHHHHHHHHHHHHHHhHhhhh--hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence 457899999999998766544 678899999999999999999999988765432343 333444444454 3466777
Q ss_pred HHHHHHHHHhC--C--CCCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc
Q 044044 161 GFVVLGRILRS--C--FTPNAVTFTSLIKGLCAE-----------SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT 225 (508)
Q Consensus 161 a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (508)
++..-.+++.. + -......|..+.-+|... ....++++.+++..+.+ +.|..+...+.--|+..
T Consensus 413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQ 491 (799)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHH
Confidence 77777666651 1 122344555555555422 12357778888887765 33445555566667888
Q ss_pred CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-CCCC------------------
Q 044044 226 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-NINP------------------ 286 (508)
Q Consensus 226 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------------------ 286 (508)
++.+.|.+..++..+.+ ...+...|..+.-.+...+++.+|+.+.+..... |...
T Consensus 492 R~l~sAl~~~~eaL~l~------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 492 RQLTSALDYAREALALN------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HhHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 99999999999999875 3567889999999999999999999998877654 1100
Q ss_pred ChhhHHHHHHHHHh---------c--------------CCHHHHHHHHHHHH--------HcC---------CCC--C--
Q 044044 287 DVVTYTSVIRGFCY---------A--------------NDWNEAKRLFIEMM--------DQG---------VQP--D-- 322 (508)
Q Consensus 287 ~~~~~~~l~~~~~~---------~--------------g~~~~a~~~~~~~~--------~~~---------~~~--~-- 322 (508)
...|...++..+-. . ++..++......+. ..+ +.| +
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence 01122222222110 0 01111111111110 000 011 1
Q ss_pred ----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044044 323 ----VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNT 398 (508)
Q Consensus 323 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 398 (508)
...|......+.+.+..++|...+.+..+.. ......|......+...|.+++|.+.|......+ |.++.+.++
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~A 723 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHH
Confidence 1133445556777888888887777776542 3356677777788889999999999999988876 557788899
Q ss_pred HHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 399 LINWYCKNKDVEEALS--LYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 399 l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..++.+.|+..-|.. ++.++.+.++. +...|..+...+.+.|+.+.|.+.|....+.
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999999999888888 99999998654 8889999999999999999999999988764
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.26 E-value=7.5e-08 Score=90.50 Aligned_cols=202 Identities=8% Similarity=-0.047 Sum_probs=107.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH-HhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHH-
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGL-FPDI-YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS- 182 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~- 182 (508)
....|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 444555666666666666666555555543321 1121 112222334456677777777777766552 223333331
Q ss_pred --HHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 183 --LIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 183 --l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
+.......+....+.+.+.... ...+........+...+...|++++|...+++..... +.+...+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~~~~~~~la 155 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDDAWAVHAVA 155 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCcHHHHHHH
Confidence 1111112344444444444311 1111122334445556667777777777777777754 34455666677
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCC-CCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 261 DGLCKEGFVDKAKELFLKMKDENI-NPDV--VTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
.++...|++++|...+++...... .++. ..|..+...+...|++++|..++++...
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 777777777777777777665421 1121 2344566667777777777777777643
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=4.2e-08 Score=84.91 Aligned_cols=359 Identities=11% Similarity=0.082 Sum_probs=196.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI 193 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (508)
+.-+....++..|+.+++.-...+-.....+-.-+..++...|++++|...+..+.+.. .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34456678899999999887654422222333445577789999999999999887743 56777777787777778888
Q ss_pred HHHHHHHHHhhhcCCCCCHhhHHH------------------------------HHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 194 MEAAALFTKHRVFACEPDVFTYNT------------------------------LINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~~------------------------------l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
.+|..+-.+..+ ++..... |.......-.+.+|++++......+
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 888887665432 1111112 2222223345667777777766543
Q ss_pred CCCccccCCHhHHHHH-HHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH---------
Q 044044 244 EFGVVCKPNTVTYNTI-IDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIE--------- 313 (508)
Q Consensus 244 ~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------- 313 (508)
|+-...|.. .-+|.+..-++-+.+++.-..+. ++.++...|.......+.=+-..|.+-..+
T Consensus 182 -------~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 182 -------PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred -------hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 333333332 33455566666666666655554 222333333332222221111111111111
Q ss_pred -----HHHcC------------CCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH---
Q 044044 314 -----MMDQG------------VQPD-----VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGY--- 368 (508)
Q Consensus 314 -----~~~~~------------~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 368 (508)
+.+++ +-|. +..-..++--|.+.+++.+|..+.+++.- ..|.....-.+..+-
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQ 331 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhh
Confidence 11110 0000 01112233345666777777766655431 122222222222111
Q ss_pred --HcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 044044 369 --CLTDKIDHARKLFVSMESNGCMHDVV-SYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVE 445 (508)
Q Consensus 369 --~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (508)
.....+.-|.+.|+-.-+.+..-|.. --..+.+.+.-..++++.+.++..+...-...|... ..+.++.+..|++.
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYV 410 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChH
Confidence 11112344555555443332222211 123445555556677888877777766533333333 45788999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 446 RALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 446 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+|+++|-.+....++.+...-..|.++|.++|+++-|++++-++.
T Consensus 411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 999999888766566444444567788999999999988865553
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=8.9e-08 Score=84.68 Aligned_cols=292 Identities=12% Similarity=0.005 Sum_probs=216.6
Q ss_pred HhcCCcchHHHHHHHHHh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 044044 153 CKMGRVSHGFVVLGRILR-SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVA 231 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 231 (508)
+-.++...|.+.+-.+.. .-++.|+.....+...+...|+..+|+..|++....+ +-+..........+.+.|+++..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhH
Confidence 344555555555444432 3467788899999999999999999999999988663 22233334445556788999998
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLF 311 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 311 (508)
..+...+.... .-+...|..-+......++++.|+.+-++.++.. +.+...+..-...+...|+.++|.-.|
T Consensus 286 ~~L~~~Lf~~~-------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 286 SALMDYLFAKV-------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred HHHHHHHHhhh-------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHH
Confidence 88888887653 3445566666667777889999999999988763 224555555566778889999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH-HHHHc-CCCHHHHHHHHHHHHhCCC
Q 044044 312 IEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLI-DGYCL-TDKIDHARKLFVSMESNGC 389 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~ 389 (508)
+..+... +-+...|..++.+|...|++.+|..+-+...+. .+.+..+...+. ..+.. -.--++|.+++++..+..
T Consensus 358 R~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~- 434 (564)
T KOG1174|consen 358 RTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN- 434 (564)
T ss_pred HHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-
Confidence 9988752 456789999999999999999998888776654 334555555542 22222 223578999998887764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
|.-....+.+...+...|..+.++.++++.+.. .||....+.|...+...+.+++|...|....+.+
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 333455677778888999999999999998874 6788889999999999999999999999888753
No 88
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.16 E-value=3.2e-06 Score=77.79 Aligned_cols=141 Identities=9% Similarity=0.067 Sum_probs=94.7
Q ss_pred HHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Q 044044 95 DYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFT 174 (508)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 174 (508)
++-++.+|. |..+|+.|++-+..+ .++++.+.++++... .+-....|..-|+.-.+..+++....+|.+.+.. .
T Consensus 10 ~~rie~nP~--di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--v 83 (656)
T KOG1914|consen 10 RERIEENPY--DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--V 83 (656)
T ss_pred HHHHhcCCc--cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--H
Confidence 444566777 999999999987666 999999999999865 3556778999999999999999999999998876 3
Q ss_pred CCHHhHHHHHHHHHhc-CCHHH----HHHHHHHh-hhcCCCCC-HhhHHHHHHHH---------HhcCChHHHHHHHHHH
Q 044044 175 PNAVTFTSLIKGLCAE-SRIME----AAALFTKH-RVFACEPD-VFTYNTLINGL---------CRTGHTIVALNLFEEM 238 (508)
Q Consensus 175 ~~~~~~~~l~~~~~~~-g~~~~----A~~~~~~~-~~~~~~~~-~~~~~~l~~~~---------~~~g~~~~A~~~~~~~ 238 (508)
.+...|...+.--.+. |+... ..+.|+-. .+.|..+- ...|+..+..+ ..+.+++...++|+++
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 4567777766543322 33222 22333332 23343332 23455555433 3344566677788887
Q ss_pred HhC
Q 044044 239 ANG 241 (508)
Q Consensus 239 ~~~ 241 (508)
...
T Consensus 164 l~t 166 (656)
T KOG1914|consen 164 LVT 166 (656)
T ss_pred hcC
Confidence 753
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=3.8e-07 Score=97.03 Aligned_cols=336 Identities=11% Similarity=0.007 Sum_probs=213.2
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC------CC--HhhHHHHHHHHH
Q 044044 152 FCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE------PD--VFTYNTLINGLC 223 (508)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~--~~~~~~l~~~~~ 223 (508)
....|+++.+..+++.+.......+..........+...|++++|..++......-.. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3455666666666655421111112223334445556779999999999876543111 11 112223345566
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCccccCC----HhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC-CChhhHHHH
Q 044044 224 RTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN-PDVVTYTSV 294 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 294 (508)
..|++++|...+++...... ..+ ....+.+...+...|++++|...+++.... |.. .....+..+
T Consensus 464 ~~g~~~~A~~~~~~al~~~~------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 464 NDGDPEEAERLAELALAELP------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCC------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 89999999999999876321 111 234566777788899999999999887643 111 112344556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCC--CHHhHHH
Q 044044 295 IRGFCYANDWNEAKRLFIEMMDQ----GVQ--P-DVVTFSVIMDELCKNGKMDKASRLLELMIWRG--VNP--NTYTYNT 363 (508)
Q Consensus 295 ~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ 363 (508)
...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 67788899999999998887653 211 1 22334455667778899999999998876531 112 2334455
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHH
Q 044044 364 LIDGYCLTDKIDHARKLFVSMESNGCM-HDVVSY-----NTLINWYCKNKDVEEALSLYSEMLSKGIKPT---VVTYNTL 434 (508)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 434 (508)
+...+...|+.++|.+.++++...... .....+ ...+..+...|+.+.|..++........... ...+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 667788899999999999887542101 111111 1122445568999999999877654321111 1123567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 435 FLGLFEIHQVERALKLFDEMRRN----HVAAD-TYTYNNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
..++...|+.++|...+++.... |...+ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888999999999999988753 33222 3456677788999999999999999998653
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=4.1e-09 Score=97.02 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
+.|++.+|.-.|+.+++.+|. +.++|..|......+++=..|+..+++..+.. +-+......|...|.-.|.-.+|.
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 344444455555555554444 44455555554444444444555555544432 223333444444444444444444
Q ss_pred HHHHHH
Q 044044 163 VVLGRI 168 (508)
Q Consensus 163 ~~~~~~ 168 (508)
.+++.-
T Consensus 374 ~~L~~W 379 (579)
T KOG1125|consen 374 KMLDKW 379 (579)
T ss_pred HHHHHH
Confidence 444443
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.2e-06 Score=79.69 Aligned_cols=389 Identities=13% Similarity=0.070 Sum_probs=220.5
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHG 161 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 161 (508)
+..++|++|+.+.+.-...... +. -+---+.+..+.+..++|+..++... +.|..+...-.+.+.+.|++++|
T Consensus 57 Iq~~ky~~ALk~ikk~~~~~~~--~~-~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 57 IQLDKYEDALKLIKKNGALLVI--NS-FFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred hhhhHHHHHHHHHHhcchhhhc--ch-hhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHH
Confidence 4567899999665543211100 11 11233455668999999999998332 23444666677888999999999
Q ss_pred HHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 162 FVVLGRILRSCFTP-NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 162 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
..+|+.+.+.+.+. +...-..++.. +....+. +.+..... ...+-..+......++..|++.+|+++++....
T Consensus 130 ldiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 130 LDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999998765332 12222222221 1111111 22222211 011222333445667789999999999998832
Q ss_pred CCCC------CC-ccccCCHh-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChh----hHHHHHHHHHhcCCHH---
Q 044044 241 GNGE------FG-VVCKPNTV-TYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVV----TYTSVIRGFCYANDWN--- 305 (508)
Q Consensus 241 ~~~~------~~-~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~--- 305 (508)
.+.+ .. ..+..+.. .-.-+.-++-..|+-++|..+|...++.... |.. .-|.|+..-....-++
T Consensus 204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~ 282 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDL 282 (652)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHH
Confidence 1110 00 00001111 1223445667889999999999999887432 321 1222221110000000
Q ss_pred -------------HHHHHHH-------------------------HH-HHc-CCCCCHHhHHHHHHHHH--hcCChhHHH
Q 044044 306 -------------EAKRLFI-------------------------EM-MDQ-GVQPDVVTFSVIMDELC--KNGKMDKAS 343 (508)
Q Consensus 306 -------------~a~~~~~-------------------------~~-~~~-~~~~~~~~~~~l~~~~~--~~~~~~~a~ 343 (508)
.++..+. +. ... +..|.. .+..++..+. +...+..+.
T Consensus 283 l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~ 361 (652)
T KOG2376|consen 283 LKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAI 361 (652)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhH
Confidence 0000000 00 000 112222 2333333222 222466777
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044044 344 RLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFV--------SMESNGCMHDVVSYNTLINWYCKNKDVEEALSL 415 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 415 (508)
+++...-+....-...+.-.+++.....|+++.|.+++. .+.+.+..| .+...+...+.+.++-+.|..+
T Consensus 362 e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~v 439 (652)
T KOG2376|consen 362 ELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAV 439 (652)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHH
Confidence 777776655433335566677788899999999999999 566555444 4455667778888877777777
Q ss_pred HHHHHHC--CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 416 YSEMLSK--GIKPT----VVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 416 ~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
+.+.+.. .-.+. ..++.-++..-.+.|+.++|..+++++.+. .++|..+...++.+|++. +++.|..+-+.+
T Consensus 440 l~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 440 LDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 7776642 01111 223333444445779999999999999986 356899999999999875 677777765444
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.7e-07 Score=83.73 Aligned_cols=372 Identities=14% Similarity=0.083 Sum_probs=242.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCC
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPN-AVTFTSLIKGLCAESR 192 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 192 (508)
..+....|+++.|+..|-+.+... +++...|..-..++...|++++|++--.+..+. .|+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456678899999999999998875 568888999999999999999998877776665 333 4578888888888999
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHH---HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHcc---
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVA---LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKE--- 266 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 266 (508)
+++|+..|.+-++.. +.+...+..+..++.......+. -.++..+....... .......|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~---~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN---YSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh---hhhccHHHHHHHHHhhcCcHh
Confidence 999999999988763 33566677777776111110000 00111111100000 000111223333222111
Q ss_pred -------CCHHHHHHHHHHH-----hhCC-------CCC----------------------ChhhHHHHHHHHHhcCCHH
Q 044044 267 -------GFVDKAKELFLKM-----KDEN-------INP----------------------DVVTYTSVIRGFCYANDWN 305 (508)
Q Consensus 267 -------g~~~~a~~~~~~~-----~~~~-------~~~----------------------~~~~~~~l~~~~~~~g~~~ 305 (508)
.+...+.-.+... ...+ ..| -..-...+.++..+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 0111111111100 0000 011 0112456677777888999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHH-------HHHHHHcCCCHHHHH
Q 044044 306 EAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNT-------LIDGYCLTDKIDHAR 378 (508)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~A~ 378 (508)
.|++.+....+.. -+..-++....+|...|.+.++...-+..++.|.. ...-|+. +..+|.+.++++.|+
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 9999999988864 45556677777899999999888888887776533 2222332 334666778899999
Q ss_pred HHHHHHHhCCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 044044 379 KLFVSMESNGCMHDVVS-------------------------YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNT 433 (508)
Q Consensus 379 ~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (508)
..|++.......|+... ...-...+.+.|++..|+..|.+++... +-|...|..
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsN 397 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSN 397 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 99988766544443322 1122456778899999999999999986 347889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHH
Q 044044 434 LFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
-.-+|.+.|.+..|++-.+...+.+ ++....|..=..++....++++|.+.|++.++. .|+..
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~ 460 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNA 460 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhH
Confidence 9999999999999999888888762 223445555555666777899999999988864 35543
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=2.3e-07 Score=78.56 Aligned_cols=380 Identities=13% Similarity=0.095 Sum_probs=234.6
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH-HHHHHhcCCcchHHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSIL-INCFCKMGRVSHGFVV 164 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~ 164 (508)
++++|++++..-.+..|. +....+.+..+|....++..|-..++.+-.. .|...-|... .+.+-+.+.+..|+.+
T Consensus 25 ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred hHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 788999999888887776 8888999999999999999999999999875 5665555433 3566788899999999
Q ss_pred HHHHHhCCCCCCHHhHHHHH----HHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 165 LGRILRSCFTPNAVTFTSLI----KGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
...|... ....+..+ ......+++..+..+.++.... .+..+.+.......+.|++++|.+-|+...+
T Consensus 101 ~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 101 AFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHh
Confidence 8887542 22222221 2234568888888888887643 3566666777777899999999999999988
Q ss_pred CCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-------------Ch---------------hhHH
Q 044044 241 GNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINP-------------DV---------------VTYT 292 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~ 292 (508)
-++ ..| ...|+.. -+..+.|+++.|++...++.++|++. |+ ..+|
T Consensus 173 vsG-----yqp-llAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 173 VSG-----YQP-LLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred hcC-----CCc-hhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 764 333 3456544 45567789999999999998876432 11 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC
Q 044044 293 SVIRGFCYANDWNEAKRLFIEMMDQ-GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT 371 (508)
Q Consensus 293 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (508)
.-...+.+.|+++.|.+.+..|.-+ ....|++|...+.-. -..+++.+..+-+.-+.+.+. ....|+..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 2233455778888888887777432 223466666554322 234556666666666776643 3466888888889998
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH---HH
Q 044044 372 DKIDHARKLFVSMESNGC-MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVE---RA 447 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---~a 447 (508)
.-++.|-+++.+-..... ..+...|+.+=......-..++|++-++.+...- .-.......-+.--...++-. .+
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 888888888754322211 1233344433322233445677766655543320 000000011111111111111 12
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 448 LKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
++-+++..+.- ..+..+-.+.|.+..++..+.++|+.-.+
T Consensus 403 i~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 403 VNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 22222222221 11223334556778889999999887664
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.9e-07 Score=79.04 Aligned_cols=328 Identities=15% Similarity=0.123 Sum_probs=223.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHH-HHHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS-LIKGL 187 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 187 (508)
-+.+.+..+.+..++++|++++..-.++. +.+......+..+|-...++..|...++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 36778888899999999999999988874 347778888899999999999999999998765 344444443 34566
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHh--hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVF--TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
.+.+.+..|+++...|... ++.. +...-.......+++..+..++++....+ +..+.+...-...+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYK 156 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccchhccchheeec
Confidence 7889999999999887642 2221 22222233456789999999988876543 45556666667789
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CH---------
Q 044044 266 EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP-------------DV--------- 323 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~--------- 323 (508)
.|+++.|.+-|+...+-+--.....|+..+ ++.+.|+++.|++...+++++|++. |.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 999999999999988764333456777655 4568899999999999998886432 11
Q ss_pred ------HhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044044 324 ------VTFSVIMDELCKNGKMDKASRLLELMIWRG-VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSY 396 (508)
Q Consensus 324 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (508)
..+|.-...+.+.|+++.|.+.+-.|.-+. ...|++|...+.-.-. .+++.+..+-+.-+.+.+ +-...|+
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHH
Confidence 123333345667889999998888775432 3456666655543222 344555555555555554 3456788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGI-KPTVVTYNTLFLGLF-EIHQVERALKLFDEMR 455 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 455 (508)
..++-.||+..-++-|-.++.+-..... -.+...|+ |+.++. ..-..++|.+-++.+.
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 8899999999999998888765322211 11333343 333433 3456777776665443
No 95
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.10 E-value=1.6e-05 Score=77.80 Aligned_cols=226 Identities=14% Similarity=0.157 Sum_probs=157.3
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHG 161 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 161 (508)
++.+++..|+...+.+++.+|. ...+-..-.-.+.+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn--~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPN--ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 4557899999999999999987 2222222223356899999999999998776534 888999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcC-C---------hHHH
Q 044044 162 FVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTG-H---------TIVA 231 (508)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A 231 (508)
..+|++..+. .|+......+..+|.+.+.+.+-.+.=-++.+. .+-+...+-.+++...+.- . ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999877 566888888888999888876554443333332 2345555556666655432 1 2346
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHH-HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELF-LKMKDENINPDVVTYTSVIRGFCYANDWNEAKRL 310 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 310 (508)
.+.++.+.+.++. --+..-.......+...|++++|++++ ....+.-..-+...-+.-+..+...++|.+..++
T Consensus 174 ~~m~~~~l~~~gk-----~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 174 EKMVQKLLEKKGK-----IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHHhccCCc-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 6667777766521 112222333344556788899999999 4444443333445555667778888999999999
Q ss_pred HHHHHHcC
Q 044044 311 FIEMMDQG 318 (508)
Q Consensus 311 ~~~~~~~~ 318 (508)
-.++...|
T Consensus 249 ~~~Ll~k~ 256 (932)
T KOG2053|consen 249 SSRLLEKG 256 (932)
T ss_pred HHHHHHhC
Confidence 88888875
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=3.4e-07 Score=97.41 Aligned_cols=373 Identities=12% Similarity=-0.036 Sum_probs=228.9
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
+...|++.+|+.....+ +....-..........+...|+++.+..+++.+.......+..........+...|++++
T Consensus 351 ~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 351 WLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34456666666544433 111001111222233455678888777777665221111122223344455667899999
Q ss_pred HHHHHHHHHhCCC------CCC--HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCH----hhHHHHHHHHHhcCCh
Q 044044 161 GFVVLGRILRSCF------TPN--AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDV----FTYNTLINGLCRTGHT 228 (508)
Q Consensus 161 a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 228 (508)
+..++......-- .+. ......+...+...|++++|...+++....-...+. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 9999887754311 111 112223345566789999999999987653212221 2445667777889999
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC--C-ChhhHHHHHHHHHhc
Q 044044 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN--P-DVVTYTSVIRGFCYA 301 (508)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~ 301 (508)
++|...+++........+. .......+..+...+...|++++|...+++.... +.. + ....+..+...+...
T Consensus 508 ~~A~~~~~~al~~~~~~g~-~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDV-YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999999888754321110 1112335566777888999999999998886542 211 1 123344555667778
Q ss_pred CCHHHHHHHHHHHHHcC--CCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHhH-----HHHHHHHHcC
Q 044044 302 NDWNEAKRLFIEMMDQG--VQP--DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNP-NTYTY-----NTLIDGYCLT 371 (508)
Q Consensus 302 g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~ 371 (508)
|++++|...+++..... ..+ ....+..+...+...|++++|.+.+..+....... ....+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 99999999998876531 112 22344556667888999999999998875421110 11111 1122445568
Q ss_pred CCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCC
Q 044044 372 DKIDHARKLFVSMESNGCMHD---VVSYNTLINWYCKNKDVEEALSLYSEMLSK----GIKP-TVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~ 443 (508)
|+.+.|...+........... ...+..+..++...|++++|...+++.... |... ...+...+..++...|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999877654321111 111345677888999999999999988764 2222 23456677888999999
Q ss_pred HHHHHHHHHHHHHC
Q 044044 444 VERALKLFDEMRRN 457 (508)
Q Consensus 444 ~~~a~~~~~~~~~~ 457 (508)
.++|...+.+..+.
T Consensus 747 ~~~A~~~L~~Al~l 760 (903)
T PRK04841 747 KSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.06 E-value=1.4e-08 Score=90.35 Aligned_cols=249 Identities=14% Similarity=0.112 Sum_probs=132.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY 300 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (508)
-+.-.|++..++.-.+ ..... ...+......+.+++...|+++.++ .++... -.|.......+...+..
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~------~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~ 78 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFS------PENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSS 78 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTST------CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCT
T ss_pred HHHHhhhHHHHHHHhh-ccCCC------chhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhC
Confidence 3344667776665554 22221 1223344455666677777665433 333222 24555555444444433
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHH
Q 044044 301 ANDWNEAKRLFIEMMDQGVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARK 379 (508)
Q Consensus 301 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (508)
.++-+.++.-+++........ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+
T Consensus 79 ~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 79 PSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp STTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHH
Confidence 344444444444433332221 2222222233455567777777766532 245566666777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 380 LFVSMESNGCMHDVVSYNTLINWYC----KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
.++.|.+.+ .|. +...+..++. ..+.+.+|..+|+++.+. ..++..+.+.++.++...|++++|.+++++..
T Consensus 153 ~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 153 ELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777776653 333 2233333332 233577777777776654 44566777777777777777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 044044 456 RNHVAADTYTYNNFIDGLCKSGFV-LEALELFRAIRD 491 (508)
Q Consensus 456 ~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 491 (508)
+.+ +-+..++..++.+....|+. +.+.++++++..
T Consensus 229 ~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 229 EKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred Hhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 543 23555666666666666766 556666666654
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=3.7e-06 Score=72.89 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=59.6
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhh-HHHH
Q 044044 140 PDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFT-YNTL 218 (508)
Q Consensus 140 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l 218 (508)
.++.-..-+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+...|+.-+.+..+. +||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 345555566677777777777777777666542 111122223334566667777777777776655 555432 2334
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 044044 219 INGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
...+.++|.++.|..=|+......
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE 136 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC
Confidence 455667777777777777777654
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=7.2e-08 Score=89.07 Aligned_cols=253 Identities=13% Similarity=0.072 Sum_probs=192.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 044044 219 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGF 298 (508)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (508)
..-+.+.|++.+|.-.|+.....+ |-+...|..|.......++-..|+..+.+..+.. +-+......|.-.|
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSy 363 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSY 363 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 445678999999999999999986 5678999999999999999999999999999864 23677888888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH---------HHHHhcCChhHHHHHHHHH-HHcCCCCCHHhHHHHHHHH
Q 044044 299 CYANDWNEAKRLFIEMMDQGVQPDVVTFSVIM---------DELCKNGKMDKASRLLELM-IWRGVNPNTYTYNTLIDGY 368 (508)
Q Consensus 299 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 368 (508)
...|.-.+|...++..+....+- .|.... ..+.....+....++|-++ ...+..+|+.+...|.-.|
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 99999999999999987653110 000000 0111112233444455444 4444457888888999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHH
Q 044044 369 CLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT-VVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 447 (508)
.-.|++++|.+.|+.++... |.|...||.|+..++...+.++|+..|.++++. .|+ +.....|.-+|...|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHH
Confidence 99999999999999999875 668899999999999999999999999999996 454 34556788899999999999
Q ss_pred HHHHHHHHH---C------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044044 448 LKLFDEMRR---N------HVAADTYTYNNFIDGLCKSGFVLEALEL 485 (508)
Q Consensus 448 ~~~~~~~~~---~------~~~~~~~~~~~li~~~~~~g~~~~A~~~ 485 (508)
.+.|-..+. . +..++...|..|=.++.-.++.|-+.+.
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 999876653 2 1222456788877778778877755544
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.03 E-value=4.4e-07 Score=89.03 Aligned_cols=388 Identities=13% Similarity=0.023 Sum_probs=234.7
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
.+...|+..|-+.++.++. -...|..|+..|....+...|.+.|+.+.+.. .-|...+......|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 4578889999888888876 66789999999998889999999999998765 45777888899999999999999988
Q ss_pred HHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 165 LGRILRSC-FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 165 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
.-..-+.. ...-...|....-.|.+.++...|+.-|+...... +.|...|..++.+|...|.+..|+++|.+....+
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr- 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR- 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-
Confidence 44433321 01112223344455778899999999999887765 5578899999999999999999999999887753
Q ss_pred CCCccccCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhC------CCCCChhhHHHHHHHHHhcCCHHHHHHHHH----
Q 044044 244 EFGVVCKPN-TVTYNTIIDGLCKEGFVDKAKELFLKMKDE------NINPDVVTYTSVIRGFCYANDWNEAKRLFI---- 312 (508)
Q Consensus 244 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---- 312 (508)
|+ ...-....-..+..|.+++|...++..... +..--..++..+...+.-.|-..++...++
T Consensus 627 -------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 627 -------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred -------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 33 223333444566789999999988877543 111122333333333333333333333333
Q ss_pred ---HHHHcCCCCCHHhHHHHHHHHHh---cC-C-h-hHHHHHHH-HHHHcCC--------------------CCCHHhHH
Q 044044 313 ---EMMDQGVQPDVVTFSVIMDELCK---NG-K-M-DKASRLLE-LMIWRGV--------------------NPNTYTYN 362 (508)
Q Consensus 313 ---~~~~~~~~~~~~~~~~l~~~~~~---~~-~-~-~~a~~~~~-~~~~~~~--------------------~~~~~~~~ 362 (508)
-........+...|..+-.+|.- .. + + .....++. +....+. ..+...|.
T Consensus 700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWY 779 (1238)
T ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence 22222212222223222222110 00 0 0 00000110 0111111 11233344
Q ss_pred HHHHHHHc----C----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 044044 363 TLIDGYCL----T----DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTL 434 (508)
Q Consensus 363 ~l~~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 434 (508)
.++..|.+ . .+...|...+.+.++.. ..+..+||.|... ...|++.-|...|-+-+.... -+..+|..+
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~Nl 856 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNL 856 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheecc
Confidence 44433332 1 22346777777766653 4567778777665 556777777777766555432 256677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 435 FLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
...+....+++.|...|....... +.|...|..........|+.-++..+|.-
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 777778888888888887776652 23555555544445556666666665543
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=2.6e-08 Score=88.68 Aligned_cols=80 Identities=15% Similarity=0.041 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 044044 339 MDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV-EEALSLYS 417 (508)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 417 (508)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +.+..+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 23344444444444444444444444444444332 22333333344444444443 33334444
Q ss_pred HHH
Q 044044 418 EML 420 (508)
Q Consensus 418 ~~~ 420 (508)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 433
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.3e-06 Score=84.17 Aligned_cols=233 Identities=17% Similarity=0.145 Sum_probs=144.4
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC-C-------C-CCCHHhHHHHHHHH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA-G-------L-FPDIYTHSILINCF 152 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~ 152 (508)
...|+.+.|.+....+ .+...|..+...+.+..+++-|.-.+-.|... | . .++ ..-..+....
T Consensus 739 vtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 4568888888877765 25668999999999988888877666555321 1 0 121 2222333444
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 044044 153 CKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVAL 232 (508)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 232 (508)
.+.|.+++|..+|.+-.+. ..|=..|-..|.+++|.++-+.--... =-.||.....-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 5778899999999887643 344456777899999998876422211 2346666777777788899888
Q ss_pred HHHHHHHh----------CCCCC---CccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 044044 233 NLFEEMAN----------GNGEF---GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFC 299 (508)
Q Consensus 233 ~~~~~~~~----------~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (508)
+.|++... .++.. -.....|...|.-.....-..|+.+.|+.+|....+ |-.++...|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 88876422 11000 000122444555555666667888888888877654 334455555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 044044 300 YANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELM 349 (508)
Q Consensus 300 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 349 (508)
-.|+.++|-++-++- | |......+.+.|-..|++.+|..+|.++
T Consensus 950 ~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566666666654432 2 4455555666666666666666666554
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=5.8e-06 Score=81.53 Aligned_cols=306 Identities=13% Similarity=0.176 Sum_probs=128.5
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHH
Q 044044 141 DIYTHSILINCFCKMGRVSHGFVVLGRILRS--CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTL 218 (508)
Q Consensus 141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 218 (508)
|+......+.++...+-..+-+++++++.-. .+..+...-|.|+-...+. +..+..++.+++...+ .| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-ch------hH
Confidence 4445555566666666666666666666432 1222233333344333332 2334444444443221 11 12
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCC----------------CCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 219 INGLCRTGHTIVALNLFEEMANGNGE----------------FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
...+...+-+++|..+|++....... +.. .--....|..+..+-.+.|...+|.+-|-+..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe-~~n~p~vWsqlakAQL~~~~v~dAieSyikad-- 1131 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAE-RCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD-- 1131 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHH-hhCChHHHHHHHHHHHhcCchHHHHHHHHhcC--
Confidence 23334444455555555543211000 000 00112344444444444444444444443221
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHH
Q 044044 283 NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYN 362 (508)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (508)
|+..|.-+++...+.|.|++....+....+..-.|... ..++-+|++.++..+..+++ ..|+.....
T Consensus 1132 ----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~ 1198 (1666)
T KOG0985|consen 1132 ----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQ 1198 (1666)
T ss_pred ----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHH
Confidence 33344444444444455554444444444433333222 23344444444443333222 123333333
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 044044 363 TLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH 442 (508)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (508)
.+.+-|...|.++.|.-+|.. +..|..+...+...|+++.|...-+++ .+..||-.+-.+|...+
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchh
Confidence 444444444444444433322 222444444455555555544433222 13334444444444333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 443 QVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 443 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.+.-| +|...++.....-..-++..|...|-+++-+.+++..+
T Consensus 1264 EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1264 EFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 32221 22222333344445556666666666666666655543
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=6.2e-07 Score=90.99 Aligned_cols=217 Identities=12% Similarity=0.035 Sum_probs=102.8
Q ss_pred HHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHhcCCcchHHHHHHH
Q 044044 93 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-----IYTHSILINCFCKMGRVSHGFVVLGR 167 (508)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~ 167 (508)
=|+..++.+|. +...|-..+....+.++.++|.+++++++.. +.+. ...|.++++.-...|.-+...++|++
T Consensus 1446 DferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1446 DFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34555555554 5556666666666666666666666666543 2111 12344444444444444444555555
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 044044 168 ILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 247 (508)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 247 (508)
+.+.. ..-.+|..|...|.+.+.+++|.++|+.|.+.- .....+|...+..+.++++-+.|..++.+....-+
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP---- 1595 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP---- 1595 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc----
Confidence 54431 112234445555555555555555555554431 12344455555555555555555555555444310
Q ss_pred cccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044044 248 VCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 321 (508)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 321 (508)
-.-.+......+..-.+.|+.+.+..+|+...... +--...|+..+..=.+.|+.+.+..+|+++...++.+
T Consensus 1596 -k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1596 -KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred -hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 00012233333444444555555555555544431 1123345555555555555555555555555444433
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=9.9e-07 Score=89.58 Aligned_cols=210 Identities=10% Similarity=0.038 Sum_probs=110.7
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhh
Q 044044 211 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVT 290 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (508)
....|...|....+.++.++|.++.++++..-...- -.--...|.++++.-..-|.-+...++|+++.+. -.....
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE--eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFRE--EEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch--hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 344555666666666666666666666554310000 0011234555555555555555566666666553 112344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHhHHHHHHHHH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVN-PNTYTYNTLIDGYC 369 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 369 (508)
|..|...|.+.+++++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.++++.-.. .......-.++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 555666666666666666666666554 2234445555666666666666666666665544111 12333444445555
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044044 370 LTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKP 426 (508)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 426 (508)
+.|+.+.++.+|+...... |.-...|+..++.-.++|+.+.+..+|++++..++.|
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5666666666666555442 3345556666666666666666666666666655443
No 106
>PLN02789 farnesyltranstransferase
Probab=98.94 E-value=7.9e-07 Score=80.30 Aligned_cols=204 Identities=11% Similarity=0.043 Sum_probs=157.1
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc--ch
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRV--SH 160 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 160 (508)
.+..++|+.+.+.+++.+|. +..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|+. ++
T Consensus 50 ~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 35789999999999999998 8889998888888888 6899999999999865 44666787766666666653 67
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc---CCh----HHHHH
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT---GHT----IVALN 233 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~ 233 (508)
++..++++++.. +-|..+|+...-++...|+++++++.++++++.+ +.|..+|+.....+.+. |.. ++.++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 788898888775 4578899998888889999999999999999886 44778888777666554 222 46777
Q ss_pred HHHHHHhCCCCCCccccCCHhHHHHHHHHHHcc----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 044044 234 LFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKE----GFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY 300 (508)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (508)
+..++.... +-|...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 205 y~~~aI~~~-------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILAN-------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhC-------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 777777764 56788888888888773 34566888888776643 2355667777777764
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.94 E-value=4.6e-07 Score=88.88 Aligned_cols=402 Identities=13% Similarity=0.046 Sum_probs=247.8
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhc
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAG-LFPDIYTHSILINCFCKM 155 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 155 (508)
.|+.|.+..+...|.+.|+.+.+.++. +..++......|++..+++.|..+.-..-+.. ...-...|....-.+.+.
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea 575 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEA 575 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCc
Confidence 344444455778999999999999988 99999999999999999999999843333221 111223455555667788
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHHHH
Q 044044 156 GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVALNL 234 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 234 (508)
++...|+.-|+..++.. +-|...|..++.+|..+|++..|+++|++.... .|+ ...-......-+..|.+.+|++.
T Consensus 576 ~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred cchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 89999999999988875 457889999999999999999999999998765 333 22222334455678999999999
Q ss_pred HHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh-------hCCCCCChhhHHHHHHHHH--------
Q 044044 235 FEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK-------DENINPDVVTYTSVIRGFC-------- 299 (508)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~-------- 299 (508)
+..........-.....-..++..+...+.-.|-...+..++++.+ .+....+...|-.+-.+|.
T Consensus 653 l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~ 732 (1238)
T KOG1127|consen 653 LGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS 732 (1238)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc
Confidence 9887654211000011112233333333333343334444443332 2211112222222222211
Q ss_pred ---------------hcCCH---H---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cC----ChhHHHHHHHHHH
Q 044044 300 ---------------YANDW---N---EAKRLFIEMMDQGVQPDVVTFSVIMDELCK----NG----KMDKASRLLELMI 350 (508)
Q Consensus 300 ---------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~ 350 (508)
..+.. + -+.+.+-.-++ ...+..+|..++..|.+ .+ +...|...+...+
T Consensus 733 ~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 733 IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 11111 1 01111111111 11223444444444433 11 2236777777777
Q ss_pred HcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 044044 351 WRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVT 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 430 (508)
+.. ..+...|+.|.-. ...|++.-|...|-+-.... +.+..+|..+...+.+..+++.|...|.......+. |...
T Consensus 811 ~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~ 886 (1238)
T KOG1127|consen 811 SLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQ 886 (1238)
T ss_pred HHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHH
Confidence 653 3367777777655 66788888888887666554 567788999999999999999999999998876432 5566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 431 YNTLFLGLFEIHQVERALKLFDEMR----RNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
|..........|+.-++..+|..-. ..|--++...|......-..+|+.++-+...+++
T Consensus 887 WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 887 WLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 6666666667888888888887622 2244455555555555556677766655544443
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=5.8e-06 Score=79.79 Aligned_cols=327 Identities=16% Similarity=0.127 Sum_probs=192.1
Q ss_pred CcccHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhC-C-------C-C
Q 044044 106 PVSSFNILFG--CLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRS-C-------F-T 174 (508)
Q Consensus 106 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-------~-~ 174 (508)
|..+-..++. .|...|+.+.|.+-.+.+. +...|..+.+.|.+..+++-|.-.+..|... | . .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445555554 3556799999988877665 4577999999999999999888777666431 1 1 1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHh
Q 044044 175 PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 254 (508)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (508)
++ ..-.-........|.+++|+.+|.+-+. |..|=..|...|.+++|+++-+.--.. .=..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---------HLr~ 859 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---------HLRN 859 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---------ehhh
Confidence 11 1112222233566999999999998765 344556677899999999986653221 1234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCC-------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 255 TYNTIIDGLCKEGFVDKAKELFLKMKDEN-------------------INPDVVTYTSVIRGFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 315 (508)
||......+-..++.+.|++.|++.-... -..|...|.....-+...|+.+.|+.+|....
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 67677777777888999999887643210 01133334444444445566666666665543
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 044044 316 DQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395 (508)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (508)
+ |-.+++..|-.|+.++|-++-++- | |......|.+.|-..|++.+|...|-+...
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa--------- 995 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA--------- 995 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------
Confidence 2 334555666677777777665542 2 555666777888888888888887766542
Q ss_pred HHHHHHHHHhc---------------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH--------
Q 044044 396 YNTLINWYCKN---------------KDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFD-------- 452 (508)
Q Consensus 396 ~~~l~~~~~~~---------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~-------- 452 (508)
+...|+.|-.+ .+.-.|-++|++. |.. +...+..|-+.|.+.+|+++--
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence 22222222111 1222233333321 110 1223344556666666665421
Q ss_pred HHH--HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 453 EMR--RNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 453 ~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
+++ +.....|+...+.-.+-++...++++|..++-..
T Consensus 1068 ~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1068 DLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 111 2233446667777777777777777777665443
No 109
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=6e-06 Score=74.67 Aligned_cols=130 Identities=7% Similarity=-0.040 Sum_probs=57.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CcchHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG-RVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 187 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (508)
++..+-..+...++.++|+.+++++++.. +-+...|+....++...| ++++++..++++.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 44444445555556666666666665542 223334444444444444 3455555555554432 22333344333333
Q ss_pred HhcCCH--HHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 188 CAESRI--MEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 188 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
.+.|+. ++++.+++++.... +.+..+|+...-++...|+++++++.++++.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333331 33444444444332 223444444444444444444444444444443
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=3.5e-07 Score=86.92 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=177.6
Q ss_pred ccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 044044 249 CKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSV 328 (508)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 328 (508)
.+|--..-..+...+...|-...|..+|++.. .|..++.+|+..|+..+|..+..+..++ +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444445667788889999999999998764 5777888999999999999999888884 788888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044044 329 IMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408 (508)
Q Consensus 329 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (508)
+.+......-+++|.++.+....+ .-..+.......++++++.+.|+.-.+.+ +....+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888777776778888887765432 22222333345789999999998887765 5677889889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
++.|.+.|.......+ -+...|+.+..+|.+.++..+|...+.+..+.+ .-+...|...+....+-|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999887632 256789999999999999999999999999887 44666777777788899999999999999
Q ss_pred HHH
Q 044044 489 IRD 491 (508)
Q Consensus 489 m~~ 491 (508)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 874
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.80 E-value=2.7e-06 Score=71.30 Aligned_cols=154 Identities=16% Similarity=0.048 Sum_probs=73.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044044 329 IMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408 (508)
Q Consensus 329 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (508)
+-..+...|+-+....+....... ...|.......+....+.|++..|...+++..... ++|...|+.+..+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 334444445444444444443222 12233344445555555555555555555554443 4455555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELF 486 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 486 (508)
+++|..-|.+..+.... +...++.|...+.-.|+.+.|..++......+. -|..+-..+.......|++++|..+.
T Consensus 150 ~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555555554221 333445555555555555555555555544321 13444444444455555555555443
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=4.8e-07 Score=86.01 Aligned_cols=234 Identities=12% Similarity=0.032 Sum_probs=170.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 187 (508)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (508)
..-..+...+...|-...|+.+|+++. .|..++.+|+..|+..+|..+..+..+. +|+...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 344566777788888888888888764 3667788888888888888888877763 67888888888777
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
....-+++|.++.+.... .+-..+.....+.++++++.+.|+.-.+.+ +....+|.....+..+.+
T Consensus 468 ~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-------plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-------PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred cChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-------ccchhHHHhccHHHHHHh
Confidence 666667788887775432 122223333445788899999988887765 456778888888888889
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLE 347 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 347 (508)
+++.|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999998887642 3356789999999999999999999999888876 4455667667777888899999988888
Q ss_pred HHHHcCC-CCCHHhHHHHHHHH
Q 044044 348 LMIWRGV-NPNTYTYNTLIDGY 368 (508)
Q Consensus 348 ~~~~~~~-~~~~~~~~~l~~~~ 368 (508)
++..... ..|..+...++...
T Consensus 612 rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHhhhhcccchhhHHHHHHH
Confidence 7765321 11444444444433
No 113
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.79 E-value=7.1e-06 Score=78.25 Aligned_cols=169 Identities=19% Similarity=0.180 Sum_probs=81.9
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 044044 261 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD 340 (508)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (508)
.+......|.+|+.+++.+...+. -...|..+...|...|+++.|.++|.+. ..++-.+..|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 334445555566655555554422 2233445555566666666666665332 12333455566666666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
.|.++-++.. |.......|-+-..-+-+.|++.+|.+++-.+. .|+. .|.+|-+.|..+..+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 6665554433 223333444444444455555555555554332 2332 2445555555555555554432
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
... -..|.-.+..-+...|+.+.|++-|-+.
T Consensus 878 ~d~---l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 878 GDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhh---hhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 211 1223344455555566666666555433
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=2.6e-06 Score=71.68 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=76.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 044044 336 NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY-CKNKD--VEEA 412 (508)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 412 (508)
.++.+++...++..++.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666553 3356667777777777777777777777776664 44566666666653 45555 3677
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 413 LSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 413 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777766433 5566666667777777777777777777665
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=6.6e-06 Score=68.98 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++.+.+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344444444444433 3344444444444444444555555544444444
No 116
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=5.5e-05 Score=74.95 Aligned_cols=353 Identities=12% Similarity=0.156 Sum_probs=193.3
Q ss_pred HHHHHHHhHHcC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCcchHHHHHH
Q 044044 90 ALCIFDYMLRMH-PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAG--LFPDIYTHSILINCFCKMGRVSHGFVVLG 166 (508)
Q Consensus 90 A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 166 (508)
-+++.++..+.. |...+++..+..+.++...+-..+-+++++++.-.+ +..+...-+.|+-...+. +..+..+..+
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~ 1044 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHH
Confidence 345666665543 222456666667777777777777788877775322 111112223333222222 2222233333
Q ss_pred HHHhCC-----------------------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH
Q 044044 167 RILRSC-----------------------FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC 223 (508)
Q Consensus 167 ~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (508)
++.... +..+....+.|+.- -+.+++|.+.-++. ..+.+|..+..+-.
T Consensus 1045 rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1045 RLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQL 1115 (1666)
T ss_pred HhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHH
Confidence 332211 01222222323221 13334443333322 14567888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 044044 224 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND 303 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (508)
+.|...+|++-|-+. .|+..|..+++...+.|.|++-.+++....+....|.+. ..|+-+|++.++
T Consensus 1116 ~~~~v~dAieSyika------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKA------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred hcCchHHHHHHHHhc------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 888888888776542 357788899999999999999999888777765555543 477888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (508)
..+.++.+ ..||......+.+-|...|.++.|.-+|... .-|..|...+...|++..|.+.-++
T Consensus 1182 l~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1182 LTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 87766554 3467777777777777778777777666543 2344555555555555555443332
Q ss_pred HH------------------------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 384 ME------------------------SNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 384 ~~------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.- ..++.....-...++..|...|-+++-+.+++..+... +.....|+-|.-.|.
T Consensus 1246 Ans~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1246 ANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYS 1324 (1666)
T ss_pred ccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHH
Confidence 21 11112223334455556666666666666655544321 123344555554444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 440 EIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+- ++++..+-++-.-.. ...-.+++++.++..|.+..-+|..-.
T Consensus 1325 ky-kp~km~EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1325 KY-KPEKMMEHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred hc-CHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33 344444433333221 112246677777777766665555443
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=2.1e-06 Score=71.88 Aligned_cols=157 Identities=15% Similarity=0.046 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 111 NILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190 (508)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (508)
..+...+...|+-+....+....... .+-|.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 34444455555555555554443321 12344444445555555566666665555554432 44555555555555555
Q ss_pred CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHH
Q 044044 191 SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVD 270 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 270 (508)
|++++|..-|.+..+.. ..+...++.+...+.-.|+++.|..++....... .-|..+-..+.......|+++
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-------~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-------AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-------CCchHHHHHHHHHHhhcCChH
Confidence 55555555555555442 2234445555555555555555555555555442 234445555555555555555
Q ss_pred HHHHHHH
Q 044044 271 KAKELFL 277 (508)
Q Consensus 271 ~a~~~~~ 277 (508)
+|.++..
T Consensus 220 ~A~~i~~ 226 (257)
T COG5010 220 EAEDIAV 226 (257)
T ss_pred HHHhhcc
Confidence 5555543
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=1.6e-06 Score=76.13 Aligned_cols=100 Identities=13% Similarity=0.037 Sum_probs=54.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCH--HhH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDI---YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNA--VTF 180 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 180 (508)
....+..++..+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|...++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34455555666666677777777776665542 1111 34455566666667777777777666654221111 133
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHhhhc
Q 044044 181 TSLIKGLCAE--------SRIMEAAALFTKHRVF 206 (508)
Q Consensus 181 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~ 206 (508)
..+..++... |+.++|.+.|+++...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 3334444433 5666677777766654
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=1.4e-05 Score=76.31 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=107.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCC
Q 044044 294 VIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDK 373 (508)
Q Consensus 294 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (508)
.+.+.....+|.+|+.+++.+++... -..-|..+...|...|+++.|.++|-+.- .++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 35566677888888888888877632 23356667778888888888888876541 35566788888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 374 IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDE 453 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (508)
|+.|.++-.+... .......|-+-..-+-+.|++.+|.++|-.+- .|+ ..+.+|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 8888887766543 23344455555566677888888888774332 233 345667777877777777654
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 454 MRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
-.-.. -..|-..+..-|...|+.+.|..-|-+.
T Consensus 876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hChhh---hhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 32111 1223334444555556655555554433
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=2e-08 Score=56.67 Aligned_cols=32 Identities=50% Similarity=0.810 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 458 HVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 458 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777776
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=4.7e-06 Score=73.09 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRNHV--AADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+...+...|++++|+..+++..+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344456666666666666666665421 11234556666666666666666666666653
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1.1e-05 Score=67.59 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=11.8
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMES 386 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (508)
+..+.+....++...|++++|..+++....
T Consensus 206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 206 TPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred ChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 333333333333334444444444433333
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=3.2e-06 Score=84.30 Aligned_cols=170 Identities=12% Similarity=0.031 Sum_probs=135.4
Q ss_pred hHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 044044 64 ASLKKFLKERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIY 143 (508)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 143 (508)
..++.++.+.....+..+. +.+++.-.....+..|. +...+-.|.....+.|.+++|..+++.+.+.. +.+..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~ 121 (694)
T PRK15179 49 RELLQQARQVLERHAAVHK----PAAALPELLDYVRRYPH--TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSE 121 (694)
T ss_pred HHHHHHHHHHHHHhhhhcc----hHhhHHHHHHHHHhccc--cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHH
Confidence 3455555555555555543 34444433344455555 78899999999999999999999999999863 33456
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH
Q 044044 144 THSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC 223 (508)
Q Consensus 144 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (508)
.+..+...+.+.+++++|...+++.+... +.+......+..++.+.|++++|..+|+++...+ +.+..++..+...+.
T Consensus 122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 122 AFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 67788899999999999999999999875 4467778888899999999999999999999743 445889999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 044044 224 RTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~ 242 (508)
..|+.++|...|++.....
T Consensus 200 ~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 200 RRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HcCCHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=9.6e-07 Score=74.25 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=92.2
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HhcCC--cc
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCF-CKMGR--VS 159 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~ 159 (508)
..++.++++..++..++.+|. +...|..+...+...|++++|+..|++..+.. +.+...+..+..++ ...|+ .+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 356678888888888888877 88888888888888888888888888888764 44666777777653 56666 47
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA 207 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (508)
+|.+++++.++.+ +.+...+..+...+.+.|++++|+..|+++.+..
T Consensus 128 ~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 128 QTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888888888764 3366777777788888888888888888887764
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.67 E-value=1.7e-05 Score=79.28 Aligned_cols=214 Identities=11% Similarity=0.062 Sum_probs=148.8
Q ss_pred HhHHHHHHHHHHccCCHHHHH-HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 253 TVTYNTIIDGLCKEGFVDKAK-ELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMD 331 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (508)
+.....+=.+...-|..++|- +++.++.+ ++..........+++.-+..... ..+.+...+..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHH
Confidence 333444444555666666663 33333321 22333333333333333333322 24556888888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 332 ELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVE 410 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (508)
...+.|.+++|..+++...+. .|| ......++..+.+.+++++|...+++..... +.+......+..++.+.|+++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchH
Confidence 999999999999999999876 444 6677778888999999999999999998876 567778888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 411 EALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+|+.+|+++...+. -+..++..+..++...|+.++|...|++..+. ..+....|+.++ ++...-..+++++.
T Consensus 172 ~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 172 QADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 99999999998432 35778899999999999999999999999876 334445555443 23334455566654
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.67 E-value=1.7e-05 Score=80.14 Aligned_cols=238 Identities=9% Similarity=0.048 Sum_probs=134.6
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHH
Q 044044 141 DIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLIN 220 (508)
Q Consensus 141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 220 (508)
+...+..|+..+...+++++|.++.+...+.. +-....|..+...+.+.++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 45567777777777788888887777665542 22233333333455555554443333 2333
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY 300 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (508)
......++.....++..+... .-+...+..++.+|-+.|+.++|..+|+++.+.. +-|+...|.+...|..
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 333444444444444444442 2344567778888888888888888888888775 4467788888888887
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHH
Q 044044 301 ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKL 380 (508)
Q Consensus 301 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (508)
. +.++|.+++.+.... +...+++..+..++.++...... +...+..+.
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~--------------- 210 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE--------------- 210 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH---------------
Confidence 7 888888887776653 45555666666666666654221 222221111
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 381 FVSMESN-GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 381 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
+.+... +...-+.++-.+-..|-..+++++++.+++.+++.... |.....-++.+|.
T Consensus 211 -~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 -RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 111111 11122333444445555666666666666666665333 4444444444443
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.66 E-value=2.2e-05 Score=79.30 Aligned_cols=170 Identities=9% Similarity=0.088 Sum_probs=117.1
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHH
Q 044044 104 PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIY-THSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS 182 (508)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (508)
+.+...|..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 357889999999999999999999999987775 44433 334444466666665555444 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHH
Q 044044 183 LIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDG 262 (508)
Q Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (508)
++.......++.-...+...+... .-+..++..+..+|-+.|+.++|..+++++.+.+ +.|..+.|.+...
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~ 159 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATS 159 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHH
Confidence 223333334443333344444443 3345577788888888899999999999988875 5678888888888
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 263 LCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
|... +.++|.+++.+.... +...+++.++.++|.++...
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 8888 888888888777653 45555666666666666654
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=4.3e-06 Score=66.43 Aligned_cols=93 Identities=11% Similarity=-0.064 Sum_probs=53.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 044044 363 TLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH 442 (508)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (508)
.+...+...|++++|...|+.+.... +.+...|..+..++...|++++|+..|++..+... .+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 34455555666666666666655554 44555555566666666666666666666665432 24555555555666666
Q ss_pred CHHHHHHHHHHHHHC
Q 044044 443 QVERALKLFDEMRRN 457 (508)
Q Consensus 443 ~~~~a~~~~~~~~~~ 457 (508)
++++|+..|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666665553
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.63 E-value=0.00044 Score=64.19 Aligned_cols=399 Identities=14% Similarity=0.166 Sum_probs=228.0
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-cCCcchH---
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK-MGRVSHG--- 161 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a--- 161 (508)
.++++++.++++...-|. ....|..-|......++++...++|.+.+.. ..+...|...+.--.+ .|+...+
T Consensus 34 ~~~~~R~~YEq~~~~FP~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~ 109 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPS--SPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREK 109 (656)
T ss_pred CHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHH
Confidence 689999999999988877 8889999999999999999999999998875 4567777776654333 3333332
Q ss_pred -HHHHHHHHh-CCCCC-CHHhHHHHHHHH---------HhcCCHHHHHHHHHHhhhcCCCC------CHhhHHHHHHHHH
Q 044044 162 -FVVLGRILR-SCFTP-NAVTFTSLIKGL---------CAESRIMEAAALFTKHRVFACEP------DVFTYNTLINGLC 223 (508)
Q Consensus 162 -~~~~~~~~~-~~~~~-~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~ 223 (508)
.+.|+-.+. .|..+ +-..|+..+..+ ....+++...++|+++...-+.. |-..|..-|+...
T Consensus 110 m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~t 189 (656)
T KOG1914|consen 110 MVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIIT 189 (656)
T ss_pred HHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH
Confidence 233444333 34333 223455555433 23345666777788776531110 1112222222111
Q ss_pred -------hcCChHHHHHHHHHHHhCCCCC---CccccCC--------HhHHHHHHHHHHccCC------H--HHHHHHHH
Q 044044 224 -------RTGHTIVALNLFEEMANGNGEF---GVVCKPN--------TVTYNTIIDGLCKEGF------V--DKAKELFL 277 (508)
Q Consensus 224 -------~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~l~~~~~~~g~------~--~~a~~~~~ 277 (508)
+...+..|..+++++...-... ...++|. ...|..+|..--..+- . ....-.++
T Consensus 190 arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yaye 269 (656)
T KOG1914|consen 190 ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYE 269 (656)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHH
Confidence 2335666777777765421100 0001111 1123333332221111 0 11111222
Q ss_pred HHh-hCCCCCChhhHH-----HHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CChhH
Q 044044 278 KMK-DENINPDVVTYT-----SVIRGFCYAND-------WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKN---GKMDK 341 (508)
Q Consensus 278 ~~~-~~~~~~~~~~~~-----~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 341 (508)
+.. -.+..|+..... ..-+.+...|+ -+++..+++...+.-..-+..+|..+...--.. ...+.
T Consensus 270 Q~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~ 349 (656)
T KOG1914|consen 270 QCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKK 349 (656)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhh
Confidence 221 112223221110 00112222333 455666666655543233444444433321111 12455
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 342 ASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH-DVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
...+++++...-...-..+|..+++.-.+..-++.|+.+|.++.+.+..+ ++..+++++..|| .++.+-|.++|+--+
T Consensus 350 ~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGL 428 (656)
T KOG1914|consen 350 VHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGL 428 (656)
T ss_pred hHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHH
Confidence 55666666544322224467777787788888889999999888876655 6677777777655 467888999988776
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD--TYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.+ ..-+..--...+.-+...++-..+..+|++....++.+| ...|..+++.-..-|+...++++-+++.
T Consensus 429 kk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 429 KK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred Hh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 65 222333445666777788888889999998888765555 4588888888888898888888877765
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=2.3e-06 Score=67.97 Aligned_cols=120 Identities=13% Similarity=-0.024 Sum_probs=94.2
Q ss_pred HHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 044044 91 LCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILR 170 (508)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 170 (508)
..+|+++++.+|. .+..+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|+++..
T Consensus 13 ~~~~~~al~~~p~-----~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPE-----TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3467777777655 25567778889999999999999988764 55778888899999999999999999999987
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHH
Q 044044 171 SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTL 218 (508)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 218 (508)
.. +.+...+..+..++...|+.++|+..|++..... +.+...|...
T Consensus 87 l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~ 132 (144)
T PRK15359 87 LD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIR 132 (144)
T ss_pred cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 64 4577888888889999999999999999988763 2244444433
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=9.1e-08 Score=53.99 Aligned_cols=32 Identities=38% Similarity=0.688 Sum_probs=15.4
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 044044 172 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKH 203 (508)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 203 (508)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=9e-05 Score=61.90 Aligned_cols=189 Identities=14% Similarity=0.071 Sum_probs=138.6
Q ss_pred ccCCHHHHHHHHHHHhhC---C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 044044 265 KEGFVDKAKELFLKMKDE---N-INPDVV-TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKM 339 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 339 (508)
...+.++..+++.++... | ..++.. .|-.++-+....|+.+.|..+++++.+. ++-+..+-..-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 355788999988887643 3 444443 3455666777889999999999998876 333333333333345668899
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 340 DKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
++|.++++..++.+ +.|..++-.=+.+.-..|+--+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998875 446666666666666677777888888777765 4779999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 044044 420 LSKGIKPTVVTYNTLFLGLFEIH---QVERALKLFDEMRRN 457 (508)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 457 (508)
+-..+ .+...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 181 ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 88632 35666677777766555 567788888888875
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.52 E-value=0.0014 Score=64.69 Aligned_cols=224 Identities=11% Similarity=0.112 Sum_probs=147.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 044044 117 LAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINC--FCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIM 194 (508)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (508)
....+++.+|++...++.+. .|+.. |..++.+ +.+.|+.++|..+++.....+.. |..+...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34678899999999998876 35543 3444444 45899999999888887665544 8889999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC-------
Q 044044 195 EAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG------- 267 (508)
Q Consensus 195 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 267 (508)
+|..+|++.... .|+......+..+|.+.+++.+-.+.--++.+. .+.+...+=.+++.....-
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------~pk~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------FPKRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcccchHHHHHHHHHHhccCCcccc
Confidence 999999998876 567777788888999988887654444444433 2333443333444443321
Q ss_pred ---CHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHhHHHHHHHHHhcCChhHH
Q 044044 268 ---FVDKAKELFLKMKDEN-INPDVVTYTSVIRGFCYANDWNEAKRLFI-EMMDQGVQPDVVTFSVIMDELCKNGKMDKA 342 (508)
Q Consensus 268 ---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 342 (508)
-..-|.+.++.+.+.+ ---+..-...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 1234566666666653 11111111222233456788999999993 444433334444555566677777777777
Q ss_pred HHHHHHHHHcC
Q 044044 343 SRLLELMIWRG 353 (508)
Q Consensus 343 ~~~~~~~~~~~ 353 (508)
.++-.++...|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 77777776664
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=5.1e-06 Score=65.67 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=82.2
Q ss_pred HHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 044044 93 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSC 172 (508)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 172 (508)
.|+.++...|. +......+...+...|++++|...|+.+...+ +.+...+..+..++...|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666666665 55666777777888888888888888887754 4466777777888888888888888888877664
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 173 FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
+.+...+..+...+...|++++|...|++..+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666777777788888888888888877765
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=0.00011 Score=67.35 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=51.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044044 333 LCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEA 412 (508)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 412 (508)
+...|++++|+..+..+++.. +-|+..+....+.+.+.|+.++|.+.++++.... +.....+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHH
Confidence 334445555555555544431 1233333444444555555555555555554442 11133344444455555555555
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 044044 413 LSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALK 449 (508)
Q Consensus 413 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (508)
+.++++..... +-|+..|..|..+|...|+..++..
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 55555444432 2244445555555555554444433
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=0.00019 Score=65.84 Aligned_cols=191 Identities=17% Similarity=0.138 Sum_probs=139.3
Q ss_pred cCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVI 329 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (508)
.|+...+...+........-..+..++.+..+. .-...-|.. .-.+...|++++|+..++.++.. .+-|...+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHH
Confidence 455556666666554443333333333333321 112233433 33456889999999999998876 35566677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044044 330 MDELCKNGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (508)
...+.+.++.++|.+.++.+... .|+ ....-.+.++|.+.|++.+|+.+++...... +.|+..|..|..+|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 88999999999999999999977 455 6667778899999999999999999988775 7789999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTY 466 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (508)
..++..-..+ .+...|+++.|+..+....+. ...+...|
T Consensus 424 ~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 424 RAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred hHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 8888766544 455679999999999888876 33344333
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00023 Score=59.53 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=142.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccCCHh-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 044044 225 TGHTIVALNLFEEMANGNGEFGVVCKPNTV-TYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND 303 (508)
Q Consensus 225 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (508)
..+.++.++++.++....... ...++.. .|..++-+....|+.+.|..+++.+... ++-+...-..-.-.+-..|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhc
Confidence 446677777777766543210 0233433 4566677777889999999999998876 32232222222223445799
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (508)
+++|+++|+.+++.+ +.|.+++..-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999999886 667778887777788889888999998888876 566999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC
Q 044044 384 MESNGCMHDVVSYNTLINWYCKNK---DVEEALSLYSEMLSKG 423 (508)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 423 (508)
+.-.. |.++..+..+...+.-.| +.+-|.++|.+.++..
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 98764 556666666666654444 6778899999998863
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=7.2e-06 Score=64.83 Aligned_cols=97 Identities=20% Similarity=0.108 Sum_probs=53.7
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
.....+...+...|++++|.+.++.+...+ +.+...|..+...+...|++++|..++++..+.+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444455555666666666666555543 3455555555556666666666666666555543 22344555555556
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 044044 439 FEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~ 457 (508)
...|++++|.+.|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666555553
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.36 E-value=5.5e-05 Score=60.40 Aligned_cols=126 Identities=14% Similarity=0.088 Sum_probs=81.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHD---VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTL 434 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l 434 (508)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777777777763 222 12233345667778888888888888887653332 2244556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 435 FLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
...+...|++++|+..++..... ......+....+.|.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77778888888888888664332 234556667778888888888888888764
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=4.5e-05 Score=70.50 Aligned_cols=120 Identities=19% Similarity=0.155 Sum_probs=59.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 044044 364 LIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (508)
|+..+...++++.|..+++++.+.. |++ ...++..+...++-.+|++++.+.++... -+...+..-...|...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 3344444455555555555555442 332 22344444445555555555555554321 134444444444555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 444 VERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
++.|+++.+++.+. .+.+..+|..|..+|.+.|++++|+..++.+
T Consensus 250 ~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555553 2223445555555555555555555555544
No 141
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.00051 Score=61.63 Aligned_cols=263 Identities=14% Similarity=0.020 Sum_probs=160.6
Q ss_pred HhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHH
Q 044044 73 RCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINC 151 (508)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 151 (508)
-....|..+.+..++..|+..+..+.+..|. +...|..-+..+...|++++|.--.+.-.+. .|. ...+...-++
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQC 126 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhh
Confidence 3445677778888999999999999999998 7888888888889999999888777665543 221 1122222233
Q ss_pred HHhcCCcchHHHHHH------------H---HHhCCC-CCCHHhHHHHH-HHHHhcCCHHHHHHHHHHhhhcCCCCCHhh
Q 044044 152 FCKMGRVSHGFVVLG------------R---ILRSCF-TPNAVTFTSLI-KGLCAESRIMEAAALFTKHRVFACEPDVFT 214 (508)
Q Consensus 152 ~~~~g~~~~a~~~~~------------~---~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 214 (508)
+...++..+|.+.++ . +..... +|.-..|..|- .++.-.|+.++|.+.--.+.+.. ..+...
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~a 205 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEA 205 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHH
Confidence 333333333332222 1 111111 23334444433 55667799999998877776653 223333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH-------------HHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 215 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT-------------YNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 215 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
...-..++.-.++.+.|...|++.+..+ |+... +..-..-..+.|++..|.+.|.+.+.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ld--------pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLD--------PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccC--------hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 3333445556789999999999988865 33221 12223344567788888888877765
Q ss_pred C---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 044044 282 E---NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV---TFSVIMDELCKNGKMDKASRLLELMIWR 352 (508)
Q Consensus 282 ~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 352 (508)
. ...++...|........+.|+.++|+.--++..+. |.. .|..-..++...+++++|.+-++...+.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 23344455555556666777777777777666654 222 2223334555667777777777776655
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=0.00012 Score=58.36 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044044 331 DELCKNGKMDKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408 (508)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (508)
..+...|++++|...|+.+......+. ......+...+...|++++|...++..... ......+...+.+|...|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 344445555555555555544431111 112223334444455555555555442221 1223334444445555555
Q ss_pred HHHHHHHHHH
Q 044044 409 VEEALSLYSE 418 (508)
Q Consensus 409 ~~~A~~~~~~ 418 (508)
+++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.9e-06 Score=48.75 Aligned_cols=33 Identities=55% Similarity=0.883 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 578888888888888888888888888888886
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=8.1e-05 Score=68.83 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
...|+..+...++++.|+++++++.+.. |+ ....++..+...++..+|.+++++.++.. +.+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455566666788899999999888764 44 34457777777888888888888888653 3356666667777888
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.++.+.|..+.+++.+.. +-+..+|..|..+|...|++++|+..+..+--.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 888899999988888874 455668888999999999999998888766543
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=4.6e-06 Score=47.49 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 044044 464 YTYNNFIDGLCKSGFVLEALELFRAIRDSKYEL 496 (508)
Q Consensus 464 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 496 (508)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 146
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=0.0077 Score=58.02 Aligned_cols=186 Identities=11% Similarity=0.008 Sum_probs=101.0
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH----------HHHhcC
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILIN----------CFCKMG 156 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g 156 (508)
.++|.++.+. .|.+..|..+.......-.++.|...|-+.... +.......|-. .-.--|
T Consensus 679 ledA~qfiEd-------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 679 LEDAIQFIED-------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYG 748 (1189)
T ss_pred hHHHHHHHhc-------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhc
Confidence 4566655542 268889999998888877888888777665432 11111111111 112247
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF-ACEPDVFTYNTLINGLCRTGHTIVALNLF 235 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 235 (508)
++++|.++|-++.++. ..+..+.+.|++-...++++.--.. .-..-..+|+.+...+.....|++|.+.|
T Consensus 749 ~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred chhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887776542 2355566677776666666531110 00011346777777777777777777777
Q ss_pred HHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 044044 236 EEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLF 311 (508)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 311 (508)
..-... ...+.++.+..++++-+.+-..+.+ +....-.+.+++.+.|.-++|.+.|
T Consensus 820 ~~~~~~---------------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 820 SYCGDT---------------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred Hhccch---------------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 653221 1234444444444444433333322 3333444455555555555555444
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=4.8e-06 Score=59.29 Aligned_cols=82 Identities=17% Similarity=0.363 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
.|+++.|+.+|+++.+..|..++...+..+..++.+.|++++|+.+++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4678888888888888777412444555677888888888888888877 3222 1222334445677777888888877
Q ss_pred HHHH
Q 044044 164 VLGR 167 (508)
Q Consensus 164 ~~~~ 167 (508)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 148
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.00 E-value=7.4e-05 Score=66.71 Aligned_cols=133 Identities=15% Similarity=0.046 Sum_probs=90.8
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMES----NGC-MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK----GI-KPTV 428 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~ 428 (508)
..|..|...|.-.|+++.|+...+.-.+ .|- ......+..+..++.-.|+++.|.+.|+..... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566666677778889988876654222 121 112345777888899999999999988875432 21 1234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 429 VTYNTLFLGLFEIHQVERALKLFDEMRR----N-HVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
....+|...|.-..++++|+.++.+-.. . +..-....+.+|..+|...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566788888888889999988865432 1 1223456778899999999999999888777654
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=1.4e-05 Score=45.71 Aligned_cols=33 Identities=58% Similarity=0.963 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT 427 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 427 (508)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555544
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.98 E-value=0.00019 Score=66.75 Aligned_cols=124 Identities=13% Similarity=0.133 Sum_probs=92.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 044044 318 GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG--VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395 (508)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (508)
+.+.+......+++.+....+.+.+..++.+..... ...-..+..++++.|.+.|..+++..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 445566777777777777777888888877776552 222244556888888888888888888888778888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 441 (508)
+|.+++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776666667766666666555
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0012 Score=59.37 Aligned_cols=157 Identities=13% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHH---H---------
Q 044044 297 GFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNT---L--------- 364 (508)
Q Consensus 297 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--------- 364 (508)
++...|+.++|.++--..++.. ..+......-..++.-.++.+.+...|.+.+.. .|+...-.. .
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHh
Confidence 4455677777777766666542 112222222222444566777777777777755 333222111 1
Q ss_pred -HHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 044044 365 -IDGYCLTDKIDHARKLFVSMESN---GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 365 -~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (508)
.+-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+.++|+.--++....... -...|..-..++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHH
Confidence 12234567777777777776654 23345555666666667777777777777666654100 11123333445556
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044044 441 IHQVERALKLFDEMRRN 457 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~~ 457 (508)
.++|++|.+-+++..+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66777777777776654
No 152
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.98 E-value=0.00033 Score=54.94 Aligned_cols=96 Identities=15% Similarity=0.020 Sum_probs=74.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
..-.+..-+...|++++|..+|+.+...+ +.+..-|-.|..++-..|++++|+..|.......+ -++..+..+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 34445555677888888888888887765 55667777888888888888888888888888764 37777888888888
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 044044 440 EIHQVERALKLFDEMRRN 457 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~ 457 (508)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888877754
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.00045 Score=52.96 Aligned_cols=26 Identities=12% Similarity=-0.052 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 466 YNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 466 ~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+..+..++.+.|++++|.+.++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33333444444444444444444443
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.95 E-value=0.0002 Score=66.55 Aligned_cols=124 Identities=13% Similarity=0.146 Sum_probs=104.8
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHh
Q 044044 283 NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--GVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYT 360 (508)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (508)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557778888899988889999999999988875 2222344667999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKN 406 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (508)
+|.|++.+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988877677777777666666655
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00057 Score=52.41 Aligned_cols=100 Identities=13% Similarity=-0.004 Sum_probs=81.4
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGC--MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK--PTVVTYNTL 434 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l 434 (508)
.++..++..+.+.|++++|.+.|+.+.+... +.....+..++.++...|++++|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566778888999999999999999987631 112456777899999999999999999999886322 124567888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 435 FLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
..++...|+.++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 899999999999999999999874
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=0.00021 Score=52.03 Aligned_cols=91 Identities=25% Similarity=0.292 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 477 (508)
.++..+...|++++|...++++.+... .+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 344444555555555555555554321 122344445555555555555555555555432 123344445555555555
Q ss_pred CHHHHHHHHHHHH
Q 044044 478 FVLEALELFRAIR 490 (508)
Q Consensus 478 ~~~~A~~~~~~m~ 490 (508)
++++|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555554
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.6e-05 Score=45.14 Aligned_cols=29 Identities=38% Similarity=0.650 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGI 424 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (508)
|+.++.+|.+.|+++.|.++|++|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444333
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.94 E-value=5.9e-05 Score=70.00 Aligned_cols=91 Identities=5% Similarity=-0.100 Sum_probs=75.8
Q ss_pred CCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc
Q 044044 79 QGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRV 158 (508)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (508)
...+..|+++.|+..|+++++..|. +...|..+..++.+.|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3345667899999999999998887 77888888889999999999999999998764 44677788888888899999
Q ss_pred chHHHHHHHHHhCC
Q 044044 159 SHGFVVLGRILRSC 172 (508)
Q Consensus 159 ~~a~~~~~~~~~~~ 172 (508)
++|+..|++.++..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998888763
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.94 E-value=0.00024 Score=51.79 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=81.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++....... +..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 35567788889999999999999998874 445577888899999999999999999999887433 4567888899999
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 044044 440 EIHQVERALKLFDEMRRN 457 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~ 457 (508)
..|++++|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999888764
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.93 E-value=0.00033 Score=62.70 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=84.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL-TDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
.+|..++....+.+..+.|+.+|.++.+.+ ..+..+|......-.+ .++.+.|..+|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356677777777777888888888877543 2234444444444333 45566688888777765 35667777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTV---VTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+...++.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888888888877765 22222 36777777777777777777777777764
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=6.4e-05 Score=64.57 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=73.2
Q ss_pred HHhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 72 ERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINC 151 (508)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (508)
+..+.-|......++|++|+..|+++++..|. |...|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A 158 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 33444555566677788888888888877776 77777777777888888888877777777653 2234567777777
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHhHH
Q 044044 152 FCKMGRVSHGFVVLGRILRSCFTPNAVTFT 181 (508)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (508)
|...|++++|++.|.+.+.. .|+-.+|.
T Consensus 159 ~~~~gk~~~A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHccCcHHHHHHHHHhhhcc--CCCcHHHH
Confidence 77777777777777777654 45555544
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.90 E-value=0.0014 Score=57.10 Aligned_cols=173 Identities=9% Similarity=-0.005 Sum_probs=95.3
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCccc---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cC-
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSS---FNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK--MG- 156 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g- 156 (508)
..|++++|++.|+.+....|. +..+ .-.++.++.+.+++++|+..+++..+....-....+...+.+.+. .+
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD 121 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence 457888999999999888877 2322 245667778889999999999888776321112223233333221 11
Q ss_pred --------------C---cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHH
Q 044044 157 --------------R---VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLI 219 (508)
Q Consensus 157 --------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 219 (508)
+ ...|++.|+++++. |=...-..+|...+..+... =..--..+.
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~e~~ia 182 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKYELSVA 182 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 0 11233333333332 22222233443333333211 001111355
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 044044 220 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK 280 (508)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (508)
..|.+.|.+..|+.-++.+.+..+. .+........++.+|...|..++|.++...+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPD----TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 6677777777787777777776532 23344556666777777777777776665543
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.89 E-value=2.1e-05 Score=55.97 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044044 406 NKDVEEALSLYSEMLSKGIK-PTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 484 (508)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666665321 2333444466666677777777666665 22111 122333344666666777777776
Q ss_pred HHHH
Q 044044 485 LFRA 488 (508)
Q Consensus 485 ~~~~ 488 (508)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.89 E-value=0.0018 Score=58.29 Aligned_cols=129 Identities=14% Similarity=0.173 Sum_probs=75.0
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHh-
Q 044044 362 NTLIDGYCLT-DKIDHARKLFVSMESN----GCM-HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK-----PTVV- 429 (508)
Q Consensus 362 ~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~- 429 (508)
..+...|... |++++|.+.|++..+. +.+ .-..++..++..+.+.|++++|.++|++....... .+..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3344556666 7888888888776542 200 01234566777888889999999999888765322 1221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRN--HVAAD--TYTYNNFIDGLCKS--GFVLEALELFRAIR 490 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~~~~~--g~~~~A~~~~~~m~ 490 (508)
.|...+-++...||...|.+.+++.... ++..+ ......|+.++-.. ..+++|+.-|+.+.
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2334455667788888898888888754 22222 33556677766432 24556666665554
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.89 E-value=0.0014 Score=59.04 Aligned_cols=184 Identities=13% Similarity=0.132 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HHhHHHHHHHHHhcCCcch
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGL---FPD--IYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~ 160 (508)
++++|..+|+++ ...|...|++++|.+.|.+...... .+. ...|.....++.+. ++++
T Consensus 30 ~~e~Aa~~y~~A----------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~ 92 (282)
T PF14938_consen 30 DYEEAADLYEKA----------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDE 92 (282)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHH
T ss_pred CHHHHHHHHHHH----------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHH
Confidence 566666666554 3455666777777777766532110 000 11122222222222 4444
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc-CChHHHHHHHHHHH
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT-GHTIVALNLFEEMA 239 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 239 (508)
|...+++ .+..|...|++..|-+.+.+ +...|... |++++|++.|++..
T Consensus 93 Ai~~~~~---------------A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 93 AIECYEK---------------AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHH---------------HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHHH---------------HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHH
Confidence 4443333 23445555666655555544 44455566 78888888887766
Q ss_pred hCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC-----hh-hHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 240 NGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD-----VV-TYTSVIRGFCYANDWNEAKRLFIE 313 (508)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~g~~~~a~~~~~~ 313 (508)
......+. ...-...+..+...+.+.|++++|.++|++........+ +. .+...+-++...|++..|...+++
T Consensus 143 ~~y~~e~~-~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 143 ELYEQEGS-PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCCC-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 53210000 011123455667777778888888888877765422211 11 122223345556777777777776
Q ss_pred HHHc
Q 044044 314 MMDQ 317 (508)
Q Consensus 314 ~~~~ 317 (508)
....
T Consensus 222 ~~~~ 225 (282)
T PF14938_consen 222 YCSQ 225 (282)
T ss_dssp HGTT
T ss_pred HHhh
Confidence 6543
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.88 E-value=0.00046 Score=54.12 Aligned_cols=97 Identities=12% Similarity=-0.073 Sum_probs=67.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHH
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN 257 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
.....+...+...|++++|.++|+.+.... +-+..-|..|..++...|++++|+..|......+ +.|...+.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-------~ddp~~~~ 107 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-------IDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCchHHH
Confidence 334445555667777777777777776654 3355667777777777777888887777777664 35666777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 258 TIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
.+..++...|+.+.|.+.|+..+..
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777776554
No 167
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.88 E-value=0.00024 Score=51.51 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCccCHHHHH
Q 044044 432 NTLFLGLFEIHQVERALKLFDEMRRNHV-AADTYTYNNFIDGLCKSG--------FVLEALELFRAIRDSKYELNIVSYN 502 (508)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 502 (508)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555566777777777777777777 777777777777665542 2345677888888888899999998
Q ss_pred HHHcc
Q 044044 503 CLIDG 507 (508)
Q Consensus 503 ~ll~~ 507 (508)
.++.+
T Consensus 109 ivl~~ 113 (120)
T PF08579_consen 109 IVLGS 113 (120)
T ss_pred HHHHH
Confidence 88764
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.0017 Score=56.08 Aligned_cols=91 Identities=11% Similarity=-0.000 Sum_probs=74.9
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChH
Q 044044 150 NCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTI 229 (508)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 229 (508)
.-+.+.+++++|+..|.++++.. +-|++.|..-..+|++.|.++.|++-.+..+..+ +....+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 34567789999999999998874 4577778888899999999999999888887763 334678999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 044044 230 VALNLFEEMANGN 242 (508)
Q Consensus 230 ~A~~~~~~~~~~~ 242 (508)
+|++.|++.++.+
T Consensus 167 ~A~~aykKaLeld 179 (304)
T KOG0553|consen 167 EAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHhhhccC
Confidence 9999999988854
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.85 E-value=0.0007 Score=62.94 Aligned_cols=89 Identities=12% Similarity=-0.091 Sum_probs=45.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 332 ELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEE 411 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (508)
.+...|++++|+..|+++++... .+...|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 34445555555555555554422 134444455555555555555555555555443 3344445555555555555555
Q ss_pred HHHHHHHHHHC
Q 044044 412 ALSLYSEMLSK 422 (508)
Q Consensus 412 A~~~~~~~~~~ 422 (508)
|+..|++.++.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00038 Score=57.26 Aligned_cols=115 Identities=10% Similarity=-0.041 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCcchHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFP--DIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
++..+...+..+.+..+.......|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555666666665444442335566777777888888888888888887653222 23467777788888888888888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHH-------hcCCHHHHHHHHH
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLC-------AESRIMEAAALFT 201 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~ 201 (508)
.+++..... +.....+..+...+. ..|++++|+..++
T Consensus 94 ~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 94 YYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 888877652 233444555555555 5555554444443
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.84 E-value=0.0071 Score=52.78 Aligned_cols=59 Identities=12% Similarity=0.020 Sum_probs=34.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH---HHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT---YNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
.....+...|++++|++.|+++....+ -+... .-.++.++.+.+++++|...+++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP-------~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYP-------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344445556777777777777666541 11111 234556666667777777777666654
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.0094 Score=57.46 Aligned_cols=207 Identities=13% Similarity=0.043 Sum_probs=129.9
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhC-CCC--------CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 044044 139 FPDIYTHSILINCFCKMGRVSHGFVVLGRILRS-CFT--------PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE 209 (508)
Q Consensus 139 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 209 (508)
.|.+..|..+.+.....-.++.|...|-+.... |++ .+...-.+=+.+| -|++++|.++|-++-..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 578888988888777767777777766554321 221 0111111222222 38899999998776543
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChh
Q 044044 210 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVV 289 (508)
Q Consensus 210 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 289 (508)
| ..+..+.+.|++-...++++.--.... -..-...|+.+...++....|++|.+.|.....
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~g~~d~d-----D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------- 824 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRNGGSDDD-----DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------- 824 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHccCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 2 245667778888777777654222111 122345788899999999999999999876532
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 044044 290 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC 369 (508)
Q Consensus 290 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (508)
....+.++.+..++++.+.+.+.+ +.+....-.+..++.+.|.-++|.+.+-+. + .|. ..+..|.
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv 889 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCV 889 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHH
Confidence 124567777777777766655444 445556667778888888888887766432 2 112 2345566
Q ss_pred cCCCHHHHHHHHHHH
Q 044044 370 LTDKIDHARKLFVSM 384 (508)
Q Consensus 370 ~~g~~~~A~~~~~~~ 384 (508)
..++|.+|.++-+..
T Consensus 890 ~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 677777777666543
No 173
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.8e-05 Score=43.00 Aligned_cols=30 Identities=47% Similarity=0.808 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIRDSKY 494 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 494 (508)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566777777777777777777777766553
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.79 E-value=0.00042 Score=50.27 Aligned_cols=79 Identities=15% Similarity=0.330 Sum_probs=55.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHhHH
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDENI-NPDVVTYTSVIRGFCYAN--------DWNEAKRLFIEMMDQGVQPDVVTFS 327 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 327 (508)
...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455556666888888888888888888 778888888887776543 2335566777777777777777777
Q ss_pred HHHHHHHh
Q 044044 328 VIMDELCK 335 (508)
Q Consensus 328 ~l~~~~~~ 335 (508)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766544
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.002 Score=55.98 Aligned_cols=117 Identities=11% Similarity=0.040 Sum_probs=80.8
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---CcchHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG---RVSHGF 162 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~ 162 (508)
+++....-.+.-++.+|. |.+.|-.|...|...|+++.|...|++..+.. +++...+..+..++.... ...++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 456666667777777777 88888888888888888888888888877653 456666666666554332 245666
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
++++++++.. +-|..+...|...+...|++.+|...|+.|...
T Consensus 214 ~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 214 ALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 7777777663 335555566666777777777777777777765
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0015 Score=56.66 Aligned_cols=100 Identities=16% Similarity=0.088 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH---QVERALKLFDEMRRNHVAADTYTY 466 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 466 (508)
+-|...|-.|..+|...|+++.|..-|.+..+.. .+|...+..+..++..+. ...++.++|+++.+.+ +-|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4455555555555555555555555555555542 123444444444443322 2344555555555442 2244444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
..|...+...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444555555555555555555554
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.77 E-value=0.0011 Score=54.64 Aligned_cols=87 Identities=7% Similarity=-0.017 Sum_probs=61.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD--IYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSL 183 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (508)
....+..+...+...|++++|+..|++..+.+..+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777778888888888888888876532222 3567777788888888888888888887753 2345566666
Q ss_pred HHHHHhcCCH
Q 044044 184 IKGLCAESRI 193 (508)
Q Consensus 184 ~~~~~~~g~~ 193 (508)
...+...|+.
T Consensus 113 g~~~~~~g~~ 122 (172)
T PRK02603 113 AVIYHKRGEK 122 (172)
T ss_pred HHHHHHcCCh
Confidence 6777766664
No 178
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.77 E-value=0.031 Score=51.27 Aligned_cols=130 Identities=23% Similarity=0.366 Sum_probs=96.3
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH-HHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNG-CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTY-NTLF 435 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~ 435 (508)
..+|...+....+..-++.|+.+|-++.+.+ +.+++..+++++..++ .|+..-|.++|+--+.. .||...| ...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456677777777888899999999988887 5677888888887655 57888889998876665 2344433 4556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 436 LGLFEIHQVERALKLFDEMRRNHVAAD--TYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.-+...++-+.|..+|+..++. +..+ ...|..+|+.-..-|+...+..+=++|.+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6677888889999999866653 3333 56788888888888888888877777764
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.75 E-value=0.0024 Score=52.69 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
+..+...+...|++++|...++++++....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44444445555555555555555544322111 2344455555555555555555555555542 22344444555555
Q ss_pred HhcCCHHH
Q 044044 404 CKNKDVEE 411 (508)
Q Consensus 404 ~~~g~~~~ 411 (508)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 55554333
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.0011 Score=59.29 Aligned_cols=129 Identities=14% Similarity=0.187 Sum_probs=53.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 044044 255 TYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRG-FCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDEL 333 (508)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (508)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444555555445555555555554321 1112222222222 11233444455555554443 233444444444545
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044044 334 CKNGKMDKASRLLELMIWRGVNPNT---YTYNTLIDGYCLTDKIDHARKLFVSMES 386 (508)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (508)
.+.++.+.|+.+|++.+.. +.++. ..|...++.-.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554433 11111 2444444444444555544444444444
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.74 E-value=0.00037 Score=62.45 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHH----cCC-CCCH
Q 044044 289 VTYTSVIRGFCYANDWNEAKRLFIEMM----DQGVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIW----RGV-NPNT 358 (508)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~ 358 (508)
..|..|.+.|.-.|+++.|+...+.-+ +.|-.. ....+..+.+++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666667777788888887655432 223211 223667778888888999988888776432 221 2234
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESN-----GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
.....|...|.-..++++|+.++.+-... +..-....+-.|..+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45667777787778888888877653221 1122445677788888888888888887766544
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.0028 Score=61.68 Aligned_cols=135 Identities=13% Similarity=0.034 Sum_probs=73.2
Q ss_pred CCCCHHhHHHHHHHHHhc--C---ChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcC--------CCHHHHHHHHHHH
Q 044044 319 VQPDVVTFSVIMDELCKN--G---KMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLT--------DKIDHARKLFVSM 384 (508)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 384 (508)
.+.+...|...+.+.... + +...|..+|+++++. .|+ ...+..+..++... .++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345566666666654332 2 255677777777765 333 44444443333221 1122333333333
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 385 ESN-GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 385 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
... ..+.+...|..+.......|++++|...++++++.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 222 123344556666555555667777777777766653 45666666666777777777777777666654
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.00082 Score=55.26 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=64.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHh
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEP--DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 254 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (508)
...|..+...+...|++++|+..|++.......+ ...+|..+...+...|++++|+..++...... +....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~~~~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------PFLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCcHH
Confidence 4456666777777788888888888876553222 23477888888888899999999988888754 33345
Q ss_pred HHHHHHHHHH-------ccCCHHHHHHHHHH
Q 044044 255 TYNTIIDGLC-------KEGFVDKAKELFLK 278 (508)
Q Consensus 255 ~~~~l~~~~~-------~~g~~~~a~~~~~~ 278 (508)
.+..+...+. ..|++++|...+++
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5666666665 56666655544443
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.71 E-value=6e-05 Score=51.09 Aligned_cols=62 Identities=24% Similarity=0.282 Sum_probs=48.4
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSIL 148 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 148 (508)
..|++++|+..|+.++...|. +...+..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 457888999999999888887 8888888888999999999999999888875 4554444433
No 185
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.066 Score=52.45 Aligned_cols=316 Identities=12% Similarity=0.072 Sum_probs=170.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc
Q 044044 148 LINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR--IMEAAALFTKHRVFACEPDVFTYNTLINGLCRT 225 (508)
Q Consensus 148 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (508)
++.-+...+.+..|+++-..+-..-.. ...+|.....-+.+..+ -+++++..++=.... -.+..+|..+.......
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhc
Confidence 445556667777777776665322111 14566666666665532 223333332222111 13456788888888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC-----------CCCChhhHHHH
Q 044044 226 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN-----------INPDVVTYTSV 294 (508)
Q Consensus 226 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l 294 (508)
|+++-|..+++.=...+.... .-.+..-+...+.-+...|+.+-...++-.+..+- .+.....|.-+
T Consensus 521 GR~~LA~kLle~E~~~~~qV~--lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVP--LLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred CcHHHHHHHHhcCCCccchhH--HHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 999888888765332221000 01122234445556667777777776666554431 11111112211
Q ss_pred HH--------HHHhcCCHHHHHHHH--HHHHHc-CCCCCHHhHHHHHHHHHhcCChhHHHH----------HHHHHHH-c
Q 044044 295 IR--------GFCYANDWNEAKRLF--IEMMDQ-GVQPDVVTFSVIMDELCKNGKMDKASR----------LLELMIW-R 352 (508)
Q Consensus 295 ~~--------~~~~~g~~~~a~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~----------~~~~~~~-~ 352 (508)
++ .+.+.++-.++...| +..... .+.+-........+.+.+.....-..+ +.+.+.. .
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 011111111111111 110000 001111122233344444433221111 1111111 1
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044044 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYN 432 (508)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 432 (508)
|......+.+--+.-+...|+..+|.++-.+.. .||...|-.-+.+++..+++++-+++-+... .+.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence 223334455666677778899999998887765 5788889989999999999998777765543 245577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELF 486 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 486 (508)
-...+|.+.|+.++|.+++-+.... .-.+.+|.+.|++.+|.++-
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 7888999999999999998765431 14677888999998887754
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.02 Score=45.92 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=68.2
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCCHhhHHH
Q 044044 139 FPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFAC-EPDVFTYNT 217 (508)
Q Consensus 139 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 217 (508)
-|....-..|..++.+.|+..+|...|++....-+..|....-.+.++....+++.+|...++++.+... ..++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3455555556666666666666666666665544445555555556666666666666666666554421 011233344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHH
Q 044044 218 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKE 274 (508)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 274 (508)
+...+...|.+..|..-|+...... |+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--------pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--------PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--------CCHHHHHHHHHHHHHhcchhHHHH
Confidence 5555666666666666666665532 333333333344445554444433
No 187
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=7.1e-05 Score=41.34 Aligned_cols=27 Identities=37% Similarity=0.765 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.65 E-value=0.003 Score=61.50 Aligned_cols=134 Identities=12% Similarity=0.044 Sum_probs=97.1
Q ss_pred CCcccHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCC--------cchHHHHHHHHHh
Q 044044 105 PPVSSFNILFGCLAKN-----KHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFCKMGR--------VSHGFVVLGRILR 170 (508)
Q Consensus 105 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~~ 170 (508)
.+..+|...+++.... ++...|+.+|+++.+. .|+ ...|..+..++..... +..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 5778999988886543 2377899999999986 454 4455554444332211 2233333444333
Q ss_pred C-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 171 S-CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 171 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
. ..+.+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2 234456778888777777899999999999999874 688899999999999999999999999998865
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.65 E-value=0.0089 Score=50.76 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=29.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 218 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
....+...|++.+|++.|+.+....+. .+--......++.++.+.|++++|...+++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445566666666666666554321 0111223444555566666666666666665543
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.57 E-value=0.0037 Score=47.28 Aligned_cols=91 Identities=18% Similarity=0.064 Sum_probs=46.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHh
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGCMHD--VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK--PTVVTYNTLFLGLFE 440 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~ 440 (508)
..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.++++....... -+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445556666666666666666553322 223444555666666666666666666554211 011122223345556
Q ss_pred cCCHHHHHHHHHHHH
Q 044044 441 IHQVERALKLFDEMR 455 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~ 455 (508)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666654443
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=4e-05 Score=51.39 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=33.9
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA 136 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (508)
+..|++++|+..|+++++..|. +...+..+..++...|++++|...|+++.+.
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456666666666666666655 6666666666666666666666666666553
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.54 E-value=0.009 Score=45.22 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=25.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|+.++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555544443322 22333444444555555555555544443
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.51 E-value=0.067 Score=48.27 Aligned_cols=288 Identities=11% Similarity=0.042 Sum_probs=166.7
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 190 ESRIMEAAALFTKHRVFACEPDVFTYNTLING--LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|.... ..-..-...|.-..-+.|
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-------EtRllGLRgLyleAqr~G 168 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-------ETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-------HHHHHhHHHHHHHHHhcc
Confidence 46666666666554321 12344433334332 334688888888888887631 011111222333334678
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH--hHHHHHHHH---HhcCChhH
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPDVV--TFSVIMDEL---CKNGKMDK 341 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~~~~~~ 341 (508)
+.+.|..+-++....- +.-...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+- .-..+...
T Consensus 169 areaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 169 AREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred cHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 8888888777776542 2235667778888888888888888887765532 233322 111222211 11234555
Q ss_pred HHHHHHHHHHcCCCCCHH-hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 342 ASRLLELMIWRGVNPNTY-TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+.. |.+..+. +..+.+.|+ .+..-+++..
T Consensus 248 Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 248 ARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCC--cHHHHHHHHH
Confidence 66655555543 55532 22334467888888888888888888874 4444332 222344443 3444444333
Q ss_pred HC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCcc
Q 044044 421 SK-GIKP-TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKS-GFVLEALELFRAIRDSKYEL 496 (508)
Q Consensus 421 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p 496 (508)
.. .++| +......+..+-...|++..|..--+...+ ..|....|..|.+.-... |+-.++..++-+.....-.|
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 22 2333 445566677777788888888777666655 467777787777765444 88888888887777543333
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.034 Score=44.66 Aligned_cols=131 Identities=11% Similarity=0.011 Sum_probs=76.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 044044 320 QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG---CMHDVVSY 396 (508)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 396 (508)
.|+...-..+..++.+.|+..+|...|.+....-..-|......+.++....+++..|...++++-+.+ -.|| ..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555556666677777777777777766654445556666666666666777777777776665542 1222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
-.+.+.+...|.++.|..-|+.....- |+...-......+.++|+.+++..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 345566666677777777777666652 33333333344455666655554444333
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.49 E-value=0.00047 Score=46.60 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=32.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHH
Q 044044 440 EIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNC 503 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 503 (508)
..|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++++... .|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHH
Confidence 4555666666666655542 224555555666666666666666666665532 344444433
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.052 Score=46.20 Aligned_cols=173 Identities=14% Similarity=0.050 Sum_probs=115.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH-----HH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN-----TL 399 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~l 399 (508)
+.+.++..+.-.|.+.-...++++.++...+.++.....|.+.-.+.|+.+.|...|++..+..-..|....+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456667777778888888888888887767778888888898899999999999998776653333333333 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 044044 400 INWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG-- 477 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 477 (508)
...|.-.+++.+|...+.+....... |+...|.-.-+..-.|+...|++.++.|.+. .|...+-++++-.++..-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHHHHHHH
Confidence 44566677888888888888876433 5666666666777788999999999999875 445444444433332211
Q ss_pred ---CHHHHHHHHHHHHHcCCccCHHHH
Q 044044 478 ---FVLEALELFRAIRDSKYELNIVSY 501 (508)
Q Consensus 478 ---~~~~A~~~~~~m~~~g~~p~~~~~ 501 (508)
+.-+-...+.+.+. |..||...-
T Consensus 336 ~Ys~~~~~k~~l~~~ia-~~~~d~f~~ 361 (366)
T KOG2796|consen 336 EYSRSMQKKQALLEAVA-GKEGDSFNT 361 (366)
T ss_pred HhhhhhhHHHHHHHHHh-ccCCCcccc
Confidence 11222334444433 677776543
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.47 E-value=0.0058 Score=50.53 Aligned_cols=104 Identities=18% Similarity=0.285 Sum_probs=64.5
Q ss_pred CCCHHhHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044044 355 NPNTYTYNTLIDGYCLT-----DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV 429 (508)
Q Consensus 355 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (508)
..+..+|..+++.|.+. |..+=....+..|.+-|+..|..+|+.|++.+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 44778888888887653 6677777778888888888888888888887764 3211 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 477 (508)
.+.++..-| -.+-+-|++++++|...|+-||..++..++..+.+.+
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111111111 1233556666666666666666666666666665444
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.44 E-value=0.038 Score=53.03 Aligned_cols=98 Identities=19% Similarity=0.209 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
+...+..-+.+...+.-|.++|..|-. ...+++.....++|++|..+-+...+. .+++ |......++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccc--cchHHHHhh
Confidence 444444444555566666666666531 124556666677777777666655543 2332 333444455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
...++++|.+ +|.+.|+-.+|.++++++...
T Consensus 816 E~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence 5555555543 455678888999998888754
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.41 E-value=0.0067 Score=48.46 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCccCHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR-----DSKYELNIVSYN 502 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 502 (508)
+...++..+...|++++|+++.+.+.... +.|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44567777888999999999999999873 4578899999999999999999999998885 469999887643
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.40 E-value=0.00085 Score=45.50 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH-QVERALKLFDEM 454 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~ 454 (508)
.|..+...+...|++++|+..|++.++.... +...|..+..++...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3333444444444444444444444433211 2333333444444444 344444444333
No 201
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.39 E-value=0.1 Score=47.52 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=36.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQV 444 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 444 (508)
+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... + + .+.-|...+.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k--K-sPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K--K-SPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C--C-CCCChHHHHHHHHHCCCH
Confidence 333444455544444443332 34455555555555555555544443221 1 1 223444555555555555
Q ss_pred HHHHHHHHH
Q 044044 445 ERALKLFDE 453 (508)
Q Consensus 445 ~~a~~~~~~ 453 (508)
.+|..++.+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555555444
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.39 E-value=0.006 Score=50.42 Aligned_cols=116 Identities=22% Similarity=0.203 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 044044 307 AKRLFIEMMDQGVQPDVVTFSVIMDELCKN-----GKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLF 381 (508)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (508)
-...|+.... -..+..+|..++..+.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|
T Consensus 33 ~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f 108 (228)
T PF06239_consen 33 HEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF 108 (228)
T ss_pred hHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH
Confidence 3444555422 245888999999998754 6677777788899999999999999999988754 3321 11111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 044044 382 VSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (508)
+.+- . -.-.+-+-|++++++|...|+-||..|+..++..+++.+.
T Consensus 109 Q~~F---------------~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEF---------------M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHh---------------c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 1 1223457788899999999999999999999888876654
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.07 Score=45.43 Aligned_cols=141 Identities=9% Similarity=0.009 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHH-----H
Q 044044 290 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNT-----L 364 (508)
Q Consensus 290 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 364 (508)
..+.++..+.-.|.+.-....+.++++...+.+......+++.-.+.|+.+.|...|++..+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34456666666777878888888888776566777778888888888888888888887665433333333333 2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNT 433 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (508)
...|..++++..|...+.++.+.+ +.++...|.-.-+..-.|+...|++..+.|.+. .|...+-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 344556777888888887777765 456666666555666678888888888888875 344444443
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.38 E-value=0.03 Score=47.51 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=24.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 044044 434 LFLGLFEIHQVERALKLFDEMRRNHVAAD---TYTYNNFIDGLCKSGFVLEA 482 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 482 (508)
+..-|.+.|.+..|..-++.+++. .+-+ ......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 445566666666666666666654 1111 22344555666666665533
No 205
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.37 E-value=0.00095 Score=44.60 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=20.6
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 368 YCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
+.+.|++++|...|+++++.. +.+...+..+..++...|++++|...|++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444332 2233333444444444444444444444443
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.35 E-value=0.006 Score=53.66 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRRNHV--AADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 479 (508)
.+.|++++|+..|+.+++..+... ...+..+..+|...|++++|...|+.+.+... +.....+-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334455555555555444321110 12344444455555555555555555543210 01122233333344445555
Q ss_pred HHHHHHHHHHHH
Q 044044 480 LEALELFRAIRD 491 (508)
Q Consensus 480 ~~A~~~~~~m~~ 491 (508)
++|.++|+++++
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 207
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.34 E-value=0.00095 Score=45.26 Aligned_cols=64 Identities=22% Similarity=0.201 Sum_probs=40.5
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK-DVEEALSLYSEMLS 421 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 421 (508)
+...|..+...+...|++++|+..|.+..+.+ +.+...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666666666666666666666654 445556666666666666 56666666666654
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.27 E-value=0.14 Score=46.41 Aligned_cols=282 Identities=12% Similarity=0.067 Sum_probs=114.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCCcchHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCCHHH
Q 044044 120 NKHYDTVLSLFKRLNSAGLFPDIYTHSILINC--FCKMGRVSHGFVVLGRILRSCFTPNAVT--FTSLIKGLCAESRIME 195 (508)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~ 195 (508)
.|+-..|.++-.+..+. +..|...+..++.+ -.-.|+++.|.+-|+.|... |.... ...|.-.--+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 34555555544443322 23333333333322 22345555555555555431 11111 1111112224455555
Q ss_pred HHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH--HHHHHHHH---ccCCHH
Q 044044 196 AAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY--NTIIDGLC---KEGFVD 270 (508)
Q Consensus 196 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~---~~g~~~ 270 (508)
|..+-++....- +.-...+...+...+..|+++.|+++++.-..... +.+++.-- ..|+.+-. -..+..
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-----ie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-----IEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----hchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 555554443321 11234455555555555555555555554443321 22332211 11111111 112333
Q ss_pred HHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 044044 271 KAKELFLKMKDENINPDVVT-YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELM 349 (508)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 349 (508)
.|...-.+..+ +.|+... -..-..++.+.|+..++-.+++.+-+....|+. + ..|.+...-|.+..-++..
T Consensus 247 ~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a----~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 247 SARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A----LLYVRARSGDTALDRLKRA 318 (531)
T ss_pred HHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H----HHHHHhcCCCcHHHHHHHH
Confidence 44443333332 2233221 112234455556666666666555554322221 1 1222222222222222222
Q ss_pred HHc-CCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 044044 350 IWR-GVNP-NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK-NKDVEEALSLYSEMLS 421 (508)
Q Consensus 350 ~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 421 (508)
.+. ..+| +......+.++-...|++..|..--+...+. .|....|-.|.+.-.. .||-.++...+.+...
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 211 1122 2344444455555555555555554444443 3444455555544332 3566666665555554
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.24 E-value=0.0064 Score=53.50 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHh
Q 044044 179 TFTSLIKGLCAESRIMEAAALFTKHRVFACEPD----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV 254 (508)
Q Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (508)
.|...+..+.+.|++++|+..|+.+.... |+ ..++..+...|...|++++|...|+.+....+. .+....
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~----s~~~~d 218 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK----SPKAAD 218 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----CcchhH
Confidence 35554544456688888888888877663 33 246667788888888888888888888765421 122344
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 255 TYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
.+..++.++...|+.++|.++|+++.+.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555666777788888888888877765
No 210
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.18 E-value=0.07 Score=45.60 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=47.1
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPP-PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
|+..+..|++++|...|+.+...+|..| ...+.-.++.++.+.++++.|+..+++..+....-...-|...|.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3444566788888888888888877632 223444555666778888888888888766532222233444444444
No 211
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.037 Score=48.11 Aligned_cols=149 Identities=13% Similarity=-0.007 Sum_probs=105.0
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR 157 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 157 (508)
+...+..|++.+|...|..++...|. +...--.++.+|...|+.+.|..++..+...--.........-|..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 44567788999999999999999888 7788888999999999999999999998754212222222234555666666
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC-CCCCHhhHHHHHHHHHhcCChHH
Q 044044 158 VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA-CEPDVFTYNTLINGLCRTGHTIV 230 (508)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 230 (508)
..+...+-.+.-.. +.|...-..+...+...|+.++|.+.+-.+...+ -..|...-..++..+.-.|.-+.
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 66666666665443 4477777788888999999999998776665542 12345566667776666664333
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.13 E-value=0.18 Score=46.46 Aligned_cols=165 Identities=16% Similarity=0.071 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHhHHHH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQG---VQPDVVTFSVIMDELCK---NGKMDKASRLLELMIWRGVNPNTYTYNTL 364 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (508)
...++-+|....+|+..+++++.+.... +.-....-....-++.+ .|+.++|++++..+......++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345556888888888888888887642 11122222233445666 78888888888886666667778888887
Q ss_pred HHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---HHHH-HCC---C
Q 044044 365 IDGYCL---------TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV----EEALSLY---SEML-SKG---I 424 (508)
Q Consensus 365 ~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~---~~~~-~~~---~ 424 (508)
.+.|-. ....++|...|.+.-+.. ++..+--.++..+...|.- .+..++- ..+. ++| .
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 766532 123566777776655542 3332222222223333321 1222222 1111 222 1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 425 KPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
..+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 223344456666777777777777777777764
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.06 E-value=0.25 Score=45.71 Aligned_cols=395 Identities=15% Similarity=0.133 Sum_probs=206.7
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHH--HhcCChhHHHHHHHHHHhC--CCCC------------CHHhHHHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCL--AKNKHYDTVLSLFKRLNSA--GLFP------------DIYTHSILI 149 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~ 149 (508)
+.+.-........+..|. ..|-.+..++ .+.+.+++|++.+.....+ +..+ |...-+..+
T Consensus 60 nld~Me~~l~~l~~~~~~----s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a 135 (549)
T PF07079_consen 60 NLDLMEKQLMELRQQFGK----SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEA 135 (549)
T ss_pred hHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHH
Confidence 333333344444444432 2344444433 4788899999988877654 2222 222335566
Q ss_pred HHHHhcCCcchHHHHHHHHHhC----CCCCCHHhHHHHHHHHHhcC--------C-------HHHHHHHHHHhhhcC---
Q 044044 150 NCFCKMGRVSHGFVVLGRILRS----CFTPNAVTFTSLIKGLCAES--------R-------IMEAAALFTKHRVFA--- 207 (508)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g--------~-------~~~A~~~~~~~~~~~--- 207 (508)
.++.+.|++.++..+++++... ....+..+|+.++-++.+.= . ++.+.-+..++....
T Consensus 136 ~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~ 215 (549)
T PF07079_consen 136 HSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRP 215 (549)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhch
Confidence 7888999999999888887653 44578888888666554421 1 111222222222111
Q ss_pred ---CCCCHhhHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCccccCCHh-HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 208 ---CEPDVFTYNTLINGLCR--TGHTIVALNLFEEMANGNGEFGVVCKPNTV-TYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 208 ---~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
+.|.......++....- ..+..--.++++...... +.|+-. ....+..-+.. +.+++..+-+.+..
T Consensus 216 Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y------v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~ 287 (549)
T PF07079_consen 216 YEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY------VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIAS 287 (549)
T ss_pred HHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc------cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHH
Confidence 12222222222222221 112222233333333333 344432 22333333333 45555555444433
Q ss_pred CCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh-------HHHHHHHHH-hcC---ChhHHHHHH
Q 044044 282 ENIN----PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVT-------FSVIMDELC-KNG---KMDKASRLL 346 (508)
Q Consensus 282 ~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~-~~~---~~~~a~~~~ 346 (508)
..+. .-..++..++....+.++...|.+.+.-+... .|+... -..+.+..+ ... +...-+.++
T Consensus 288 ~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lw 365 (549)
T PF07079_consen 288 SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLW 365 (549)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 2111 12456888888888999999998888777654 233221 111222222 111 122334455
Q ss_pred HHHHHcCCCCCHHhHHHHH---HHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHh---cCCHHHHHHH
Q 044044 347 ELMIWRGVNPNTYTYNTLI---DGYCLTDK-IDHARKLFVSMESNGCMHDVVSYNTLIN----WYCK---NKDVEEALSL 415 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~ 415 (508)
+.....++. .......|+ .-+.+.|. -++|..+++.+.+-. +.|..+-|.+.. .|.+ ...+..-+.+
T Consensus 366 e~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 366 EEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred HHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 555544332 112222222 33445555 788999998888753 345544443322 2211 1223333333
Q ss_pred HHHHHHCCCCCCH----hHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 416 YSEMLSKGIKPTV----VTYNTLFL--GLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 416 ~~~~~~~~~~p~~----~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
-+-+.+.|+.|-. ..-|.|.+ -+..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++.++
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3334455766532 23344433 35578888888766555555 6789999999999999999999999998765
Q ss_pred HHcCCccCHHHHHH
Q 044044 490 RDSKYELNIVSYNC 503 (508)
Q Consensus 490 ~~~g~~p~~~~~~~ 503 (508)
.|+..++++
T Consensus 522 -----P~n~~~~ds 530 (549)
T PF07079_consen 522 -----PPNERMRDS 530 (549)
T ss_pred -----CCchhhHHH
Confidence 566666654
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.06 E-value=0.00096 Score=46.57 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=50.5
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
..+|+.+...|...|++++|++.|++........|. ..|+ ..++..+..++...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346788888888999999999988887754211111 1233 56788899999999999999999988754
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=97.05 E-value=0.025 Score=44.82 Aligned_cols=90 Identities=11% Similarity=0.026 Sum_probs=69.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 044044 366 DGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVE 445 (508)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (508)
.-+...|++++|..+|+-+...+ +.+..-|..|..++-..+++++|+..|......+. -|+..+.....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 34556889999999988877765 45677778888888888999999999887776543 25555667788888999999
Q ss_pred HHHHHHHHHHHC
Q 044044 446 RALKLFDEMRRN 457 (508)
Q Consensus 446 ~a~~~~~~~~~~ 457 (508)
.|...|+...+.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999988888763
No 216
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.35 Score=48.34 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044044 434 LFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEAL 483 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 483 (508)
++..+.+..+++.+..+.+..-+. ++..|..++..+.+.+..+.-.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHH
Confidence 444455555666655555544332 5566666666666666444333
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.03 E-value=0.0031 Score=43.29 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=43.5
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA 136 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (508)
++..++++.|+++++.++..+|. +...|.....++.+.|++++|.+.|+...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44567888888888888888877 7778888888888888888888888888775
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.93 E-value=0.017 Score=46.05 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh-----CCCCCCh
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKD-----ENINPDV 288 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 288 (508)
+...++..+...|++++|+.+++.+...+ |-+...|..+|.++...|+..+|.+.|+++.+ .|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 34456666677778888888888777764 45677777788888888888888777777643 2666665
Q ss_pred hh
Q 044044 289 VT 290 (508)
Q Consensus 289 ~~ 290 (508)
.+
T Consensus 137 ~~ 138 (146)
T PF03704_consen 137 ET 138 (146)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.93 E-value=0.0074 Score=41.33 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=27.6
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.|.+.+++++|.++++.+.+.+ +.++..|.....++...|++++|.+.|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555443 334444444555555555555555555555543
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.88 E-value=0.0033 Score=43.79 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSK----GIK-PT-VVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
+|+.+...|...|++++|+..|++.++. |.. |+ ..++..+..++...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555555444422 100 11 223444444444444444444444443
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=96.88 E-value=0.0049 Score=48.73 Aligned_cols=85 Identities=12% Similarity=-0.005 Sum_probs=38.2
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|++++|..+|.-+...++. +..-|..|..++...+++++|+..|......+ .-|....-....++...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 344455555555444444443 44444444444444455555555544443332 123333334444444444444444
Q ss_pred HHHHHHHh
Q 044044 163 VVLGRILR 170 (508)
Q Consensus 163 ~~~~~~~~ 170 (508)
..|+.+..
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 44444443
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.84 E-value=0.13 Score=49.69 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=56.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 287 DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLID 366 (508)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (508)
+..+...+..-+.+...+.-|-++|..|-+. ..++......+++++|..+-+...+. .|| +|..-.+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 3445555555566667788888898877542 35677888999999999988776543 333 3445556
Q ss_pred HHHcCCCHHHHHHHHHH
Q 044044 367 GYCLTDKIDHARKLFVS 383 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~ 383 (508)
.++...++++|.+.|.+
T Consensus 813 wLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHK 829 (1081)
T ss_pred HhhhhhhHHHHHHHHHH
Confidence 66667777777655543
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.066 Score=45.06 Aligned_cols=168 Identities=12% Similarity=0.088 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 123 YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTK 202 (508)
Q Consensus 123 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (508)
++.|.-+.+++.+. .--+..|+.....|.+.|..+.|-..+++.-+. ....+.++|+++|++
T Consensus 74 yEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqr 135 (308)
T KOG1585|consen 74 YEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQR 135 (308)
T ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHH
Confidence 34444444444432 122333445555666666666666666554331 122444555555554
Q ss_pred hhhcCC--CC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC-HhHHHHHHHHHHccCCHHHHHHHH
Q 044044 203 HRVFAC--EP---DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYNTIIDGLCKEGFVDKAKELF 276 (508)
Q Consensus 203 ~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 276 (508)
....-. .. -...+......+.+...+++|-..+.+-........ .-++ -..|...|-.+....++..|.+.+
T Consensus 136 alavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~ 213 (308)
T KOG1585|consen 136 ALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCY 213 (308)
T ss_pred HHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 322100 11 122334444555666666665554433221100000 0011 122344444555556777777777
Q ss_pred HHHhhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 044044 277 LKMKDE---NINPDVVTYTSVIRGFCYANDWNEAKRLF 311 (508)
Q Consensus 277 ~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 311 (508)
+.-.+. .-+-+..+...|+.+| ..|+.+++..++
T Consensus 214 r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 214 RDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred cchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 664332 1122445566666654 456666555443
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.81 E-value=0.41 Score=44.13 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
.|+.++|.+++..+......++..+|..++..|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455555555554433333344444554444443
No 225
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.77 E-value=0.57 Score=45.19 Aligned_cols=376 Identities=11% Similarity=0.028 Sum_probs=221.4
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCCcchHHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC-KMGRVSHGFVV 164 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~ 164 (508)
+.+.+..+++.++...|. --..|......-.+.|..+.+.++|++.+. |++.+...|...+.-+. ..|+.+.....
T Consensus 60 ~~~~~r~~y~~fL~kyPl--~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPL--CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 447788889999888876 666788888888899999999999999987 57778888887775554 45677777788
Q ss_pred HHHHHhC-CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH---hc------CChHHHHH
Q 044044 165 LGRILRS-CFT-PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC---RT------GHTIVALN 233 (508)
Q Consensus 165 ~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~------g~~~~A~~ 233 (508)
|+.+... |.. .+...|...|..-..++++.....+|+++++. ...-++..-.-|. +. ...+++.+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence 8887653 322 34567888888888889999999999998864 2222332222221 11 23344443
Q ss_pred HHHHHHhC-CCCCCccccCCHhHHH------------------HHHH-------HHHccCCHHHHHHHHHHHhhC---CC
Q 044044 234 LFEEMANG-NGEFGVVCKPNTVTYN------------------TIID-------GLCKEGFVDKAKELFLKMKDE---NI 284 (508)
Q Consensus 234 ~~~~~~~~-~~~~~~~~~~~~~~~~------------------~l~~-------~~~~~g~~~~a~~~~~~~~~~---~~ 284 (508)
+-...... ...+ ..+....+. .+.. ++-......+....|+.-.+. .+
T Consensus 213 l~~~~~~~~~~~~---~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhv 289 (577)
T KOG1258|consen 213 LRSDVAERSKITH---SQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHV 289 (577)
T ss_pred HhhhHHhhhhccc---ccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccccccc
Confidence 33333221 0000 000111111 1111 111111222222223332222 11
Q ss_pred C----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCH
Q 044044 285 N----PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVN--PNT 358 (508)
Q Consensus 285 ~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~ 358 (508)
. ++..+|..-+.--...|+++.+.-+|+...-- +..-...|-..+.-....|+.+-+..++....+-.++ |..
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i 368 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII 368 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH
Confidence 1 23456777777777888888888888877542 1111223444444444558888888777766654333 223
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHhHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDV-VSYNTLINWYCKNKDVEEAL---SLYSEMLSKGIKPTVVTYNTL 434 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l 434 (508)
....+.+ .-..|+++.|..+++.+.+.- |+. ..-..-+....+.|+.+.+. .++...... +-+..+...+
T Consensus 369 ~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l 442 (577)
T KOG1258|consen 369 HLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKL 442 (577)
T ss_pred HHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHH
Confidence 3333322 334679999999999988763 433 22233345566778888777 333333322 1233333333
Q ss_pred HHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 435 FLG-----LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 435 ~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 479 (508)
.-- +.-.++.+.|..++.++.+. .+++...|..+++.....+-.
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 322 33467888999999988886 677888888888877776643
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.75 E-value=0.15 Score=38.43 Aligned_cols=139 Identities=15% Similarity=0.184 Sum_probs=67.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044044 335 KNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALS 414 (508)
Q Consensus 335 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 414 (508)
-.|..+++.++..+...+. +..-+|.+|--....-+-+-..++++.+-+ ..|. ...|+......
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 3566667777766666542 444455555333333333333333333322 1121 12233333333
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044044 415 LYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKY 494 (508)
Q Consensus 415 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 494 (508)
.+-.+- -+...++..+..+..+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++++..++|+
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 332211 13334455566677777777777777777653 355677777777788888888888888887777775
Q ss_pred c
Q 044044 495 E 495 (508)
Q Consensus 495 ~ 495 (508)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.73 E-value=0.02 Score=53.21 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=42.9
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPV---SSFNILFGCLAKNKHYDTVLSLFKRLNSA 136 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (508)
.|..+...|++++|+..|+++++.+|. +. .+|..+..+|...|++++|++.++++.+.
T Consensus 81 LG~AL~~lGryeEAIa~f~rALeL~Pd--~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 81 LGLSLFSKGRVKDALAQFETALELNPN--PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555667888888888888887776 43 35777888888888888888888887764
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.69 E-value=0.15 Score=49.39 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=91.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH------hHHHHHHHHH----cCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 328 VIMDELCKNGKMDKASRLLELMIWRGVNPNTY------TYNTLIDGYC----LTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
.+++...=.|+-+.+++.+....+.+---.+. .|...+..++ ...+.+.|.++++.+.+. .|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34444444556666666665554432111111 1222222222 245677788888888776 45555554
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 044044 398 T-LINWYCKNKDVEEALSLYSEMLSKG---IKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFID-G 472 (508)
Q Consensus 398 ~-l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~ 472 (508)
. -.+.+...|++++|++.|++..... .......+.-++.++...+++++|.+.|..+.+.+ .....+|.-+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 3 3456677788888888888665421 11234455667777788888888888888888753 223444443332 3
Q ss_pred HHhcCCH-------HHHHHHHHHHH
Q 044044 473 LCKSGFV-------LEALELFRAIR 490 (508)
Q Consensus 473 ~~~~g~~-------~~A~~~~~~m~ 490 (508)
+...|+. ++|.++|.+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4566766 77777777765
No 229
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.64 E-value=0.21 Score=41.37 Aligned_cols=195 Identities=16% Similarity=0.029 Sum_probs=111.5
Q ss_pred hccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 75 KSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK 154 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (508)
-..|.-|-+.|-..-|+--|.+.+...|. -+..||.+.-.+...|+++.|.+.|+...+....-+-...|.-| ++--
T Consensus 69 fERGvlYDSlGL~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY 145 (297)
T COG4785 69 FERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYY 145 (297)
T ss_pred HHhcchhhhhhHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeee
Confidence 34566677778888899999999988887 67789999999999999999999999998864222222223222 2335
Q ss_pred cCCcchHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHH-HHhhhcCCCCCHhhHHHHHHHHH-hcCChHHH
Q 044044 155 MGRVSHGFVVLGRILRSCF-TPNAVTFTSLIKGLCAESRIMEAAALF-TKHRVFACEPDVFTYNTLINGLC-RTGHTIVA 231 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 231 (508)
.|+++-|.+-+...-+... .|-...|--+.. ..-+..+|..-+ ++... .|..-|...+-.|. ..=..+
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e-- 216 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEE-- 216 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHH--
Confidence 6788888877766655421 222223333322 334556666544 33332 24344443333322 111122
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
.+++.+..........-..=..+|.-+..-+...|+.++|..+|.-....
T Consensus 217 -~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 217 -TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22333322110000000011346666777777788888888888776554
No 230
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.64 E-value=0.71 Score=44.55 Aligned_cols=347 Identities=15% Similarity=0.045 Sum_probs=205.5
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHH-hcCChhHHHHHHHHHHhC-CC-CCCHHhHHHHHHHHHhcCCcc
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLA-KNKHYDTVLSLFKRLNSA-GL-FPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~ 159 (508)
..|..+.+.++|++.++.-|. ++..|...+..+. ..|+.+....+|+.+... |. -.+...|...|.--..++++.
T Consensus 91 klg~~~~s~~Vfergv~aip~--SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPL--SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 457889999999999998876 8888887776554 567888888999988764 21 134556888888778888999
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHH---Hhc------CCHHHHHHHHHHhhhc---C-CCCCHhhHHHHHH------
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGL---CAE------SRIMEAAALFTKHRVF---A-CEPDVFTYNTLIN------ 220 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~------g~~~~A~~~~~~~~~~---~-~~~~~~~~~~l~~------ 220 (508)
....++++.++.. ...++....-| .+. -..+++.++-...... . .......+..-+.
T Consensus 169 ~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 9999999988642 12222222111 111 1223333222221110 0 0001111111111
Q ss_pred -------------------HHHhcCChHHHHHHHHHHHhCCCCC--CccccCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 044044 221 -------------------GLCRTGHTIVALNLFEEMANGNGEF--GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKM 279 (508)
Q Consensus 221 -------------------~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (508)
.+.......+..-.|+.-..+. .+ .+..+++..+|...+..-.+.|+++.+.-+|++.
T Consensus 245 ~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikrp-Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~erc 323 (577)
T KOG1258|consen 245 KSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRP-YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERC 323 (577)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccc-ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHH
Confidence 1111112222222333322221 00 0112445678999999999999999999999998
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H
Q 044044 280 KDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN-T 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 358 (508)
.-. +..=...|-..+.-....|+.+-|..++....+-..+-...+--.-....-..|+++.|..+++.+...- |+ .
T Consensus 324 li~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v 400 (577)
T KOG1258|consen 324 LIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLV 400 (577)
T ss_pred HhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--Cchh
Confidence 642 1112234444455555569999999888877665444333333333334455789999999999998773 44 3
Q ss_pred HhHHHHHHHHHcCCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 044044 359 YTYNTLIDGYCLTDKIDHAR---KLFVSMESNGCMHDVVSYNTLIN-----WYCKNKDVEEALSLYSEMLSKGIKPTVVT 430 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 430 (508)
..-..-+....+.|+.+.+. +++...... .-+......+.- .+.-.++.+.|..++.++.+. .+++...
T Consensus 401 ~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~ 477 (577)
T KOG1258|consen 401 EVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVL 477 (577)
T ss_pred hhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHH
Confidence 33333445667788888888 444443332 222223333322 234568899999999999987 5567777
Q ss_pred HHHHHHHHHhcC
Q 044044 431 YNTLFLGLFEIH 442 (508)
Q Consensus 431 ~~~l~~~~~~~g 442 (508)
|..++..+...+
T Consensus 478 ~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 478 YLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhCC
Confidence 877777766555
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=96.61 E-value=0.16 Score=47.56 Aligned_cols=148 Identities=12% Similarity=0.074 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHhH---HcCCCCCCcccHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 86 TPNEALCIFDYML---RMHPSPPPVSSFNILFGCLAK---------NKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 86 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
+.+.|+.+|++++ ..+|. ...+|..+..++.. .....+|.++.++..+.+ +.|......+..+..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~--~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL--KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc--cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3567888999998 55554 45566665555442 223456777788888776 567888888888777
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHH
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVAL 232 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 232 (508)
-.++++.|..+|++....+ +....+|........-.|+.++|.+.+++........- .......++.|+. ...+.|+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred hhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 7888899999999888764 23445555555556667889999998888666532211 2223333445554 3456777
Q ss_pred HHHHHH
Q 044044 233 NLFEEM 238 (508)
Q Consensus 233 ~~~~~~ 238 (508)
++|-+-
T Consensus 428 ~~~~~~ 433 (458)
T PRK11906 428 KLYYKE 433 (458)
T ss_pred HHHhhc
Confidence 766543
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.065 Score=47.30 Aligned_cols=154 Identities=11% Similarity=-0.032 Sum_probs=113.4
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--hH--HHHHHHHHhcCC
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIY--TH--SILINCFCKMGR 157 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~--~~l~~~~~~~g~ 157 (508)
.-.|+..+|-...+++++..|. +..+++..=.++.-.|+...-...++++... -.+|.. +| ..+.-++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4567888999999999999998 8889988889999999999999999998765 133332 22 333345568899
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC---HhhHHHHHHHHHhcCChHHHHHH
Q 044044 158 VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD---VFTYNTLINGLCRTGHTIVALNL 234 (508)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 234 (508)
+++|.+.-++..+.+ +-|...-.++...+-..|++.++.+...+-...=-..+ ..-|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999988765 45677777888888888999999998876433210000 11233334456677999999999
Q ss_pred HHHHH
Q 044044 235 FEEMA 239 (508)
Q Consensus 235 ~~~~~ 239 (508)
|+.-.
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 97643
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.54 E-value=0.074 Score=50.74 Aligned_cols=157 Identities=12% Similarity=0.087 Sum_probs=97.9
Q ss_pred HHHHhcCChhHHHHHHH--HHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 115 GCLAKNKHYDTVLSLFK--RLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 192 (508)
Q Consensus 115 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (508)
....-.|+++++.++.+ ++.. .+ +....+.++.-+.+.|..+.|+++..+-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 33445778888777765 2221 11 24457778888888888888887754321 12344556788
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHH
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKA 272 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 272 (508)
++.|.++.++. .+...|..|.....++|+++.|.+.|.+.. -+..|+-.|.-.|+.+..
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHH
Confidence 88888776543 366788888888888888888888888753 355677777788888877
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 273 KELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIE 313 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 313 (508)
.++.+.....| -++....++.-.|+.++..+++.+
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777776654 255556666677888887777654
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.53 E-value=0.058 Score=50.29 Aligned_cols=64 Identities=9% Similarity=-0.014 Sum_probs=42.2
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHD-V---VSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
+...++.+..+|.+.|++++|...|++.++.+ |+ . .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35566666777777777777777777766653 33 2 24666777777777777777777777664
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.50 E-value=0.054 Score=41.49 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLSK---------------GIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
|..++..++.++++.|+.+....+++..=.- ...|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888899999999999888888765321 2346777888888888888888888888887775
Q ss_pred C-CCCCCHHHHHHHHHHHHhcC
Q 044044 457 N-HVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 457 ~-~~~~~~~~~~~li~~~~~~g 477 (508)
. +++.+..+|..|+.-....-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 4 67777788888877554433
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=96.45 E-value=0.47 Score=44.61 Aligned_cols=147 Identities=11% Similarity=0.038 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHc-CCCCC-HHhHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044044 339 MDKASRLLELMIWR-GVNPN-TYTYNTLIDGYCL---------TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK 407 (508)
Q Consensus 339 ~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (508)
.+.|..+|.+.+.. ...|+ ...|..+..++.. ..+..+|.++-++..+.+ +.|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 34566666666621 12333 3344333332221 223456666666676665 567777777777667777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAA-DTYTYNNFIDGLCKSGFVLEALELF 486 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 486 (508)
+++.|...|++....++. ...+|......+...|+.++|.+.+++..+....- -.......++.|+..+ .++|+++|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 777777777777775322 34456666666667777777777777766542111 1223333444555543 46666665
Q ss_pred HH
Q 044044 487 RA 488 (508)
Q Consensus 487 ~~ 488 (508)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.063 Score=46.32 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSKGIK--PTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH-VAA-DTYTYNNFI 470 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~li 470 (508)
.|+.-+. +.+.|++.+|...|...++..+. -....+..|..++...|+++.|..+|..+.+.- -.| -+..+-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555444 34556677777777777766321 123345667777777777777777777776541 111 234555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 044044 471 DGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 471 ~~~~~~g~~~~A~~~~~~m~~ 491 (508)
....+.|+.++|...|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 677777777777777777765
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.33 E-value=0.3 Score=47.40 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHh
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDV------VTFSVIMDELCK----NGKMDKASRLLELMIWRGVNPNTYT 360 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (508)
+..+++...-.|+-+.+++.+.+..+.+-.-.. -.|..++..++. ..+.+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 445566666667777777777665553211111 123333332222 34566777777777765 445444
Q ss_pred HHHH-HHHHHcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-
Q 044044 361 YNTL-IDGYCLTDKIDHARKLFVSMESNG---CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLF- 435 (508)
Q Consensus 361 ~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~- 435 (508)
|... .+.+...|++++|.+.|++..... .+.....+--++..+.-..+|++|.+.|.++.+..-. +..+|..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 4333 355666777777777777654311 0112233444556666777788888888777775322 333333332
Q ss_pred HHHHhcCCH-------HHHHHHHHHHH
Q 044044 436 LGLFEIHQV-------ERALKLFDEMR 455 (508)
Q Consensus 436 ~~~~~~g~~-------~~a~~~~~~~~ 455 (508)
.++...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 333455665 67777766553
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.29 Score=42.87 Aligned_cols=124 Identities=17% Similarity=0.143 Sum_probs=58.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 044044 116 CLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIME 195 (508)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (508)
.....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445666666666666665542 223344455556666666666666666655332111111111122233333333333
Q ss_pred HHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 196 AAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 196 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
...+-.+.... +-|...-..+...+...|+.++|++.+-.+..++
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33333322221 2244555555556666666666666555555544
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.11 Score=47.46 Aligned_cols=95 Identities=13% Similarity=0.019 Sum_probs=58.9
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV-TYNTLFLG 437 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~ 437 (508)
.+++.+..+|.+.+++.+|++..++.++.+ ++|+...-.-..++...|+++.|+..|+++++. .|+.. +-+.|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 345556667777777777777777777765 566666666777777777778888777777775 33333 33333333
Q ss_pred HHhcCCH-HHHHHHHHHHHH
Q 044044 438 LFEIHQV-ERALKLFDEMRR 456 (508)
Q Consensus 438 ~~~~g~~-~~a~~~~~~~~~ 456 (508)
-.+.... +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3333332 333556666653
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.23 E-value=0.37 Score=38.04 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK 405 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (508)
...++..+...+.......+++.+...+. .+....+.++..|++.+ ..+..+.+.. . .+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 34556666666777777777777776653 45666777777776543 2333333331 1 122223345666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044044 406 NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI-HQVERALKLFDEMRRNHVAADTYTYNNFIDGLC 474 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 474 (508)
.+-++++.-++.++-. . ...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6666666666655422 1 1122222223 5666666665531 24555666655543
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.15 E-value=0.94 Score=40.68 Aligned_cols=224 Identities=15% Similarity=0.147 Sum_probs=128.7
Q ss_pred HHccCCHHHHHHHHHHHhhCC--CCCCh------hhHHHHHHHHHhcC-CHHHHHHHHHHHHHc--------CCCCCH--
Q 044044 263 LCKEGFVDKAKELFLKMKDEN--INPDV------VTYTSVIRGFCYAN-DWNEAKRLFIEMMDQ--------GVQPDV-- 323 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~~-- 323 (508)
..+.|+.+.|..++.++.... ..|+. ..|+.-.. ....+ +++.|..++++..+. ...++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 356899999999999987642 22321 12333333 33455 888888887765543 122332
Q ss_pred ---HhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 324 ---VTFSVIMDELCKNGKMD---KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 324 ---~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
.++..++.+|...+..+ +|..+++.+.... ...+.++..-++.+.+.++.+.+.+.+.+|...- ......+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHH
Confidence 36677788888877655 5666666665442 2235566566777777899999999999998863 21334455
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHh-HHHH-HH---HHHHhcCC------HHHHHHHHHHHHHC-CCCCC
Q 044044 398 TLINWY---CKNKDVEEALSLYSEMLSKGIKPTVV-TYNT-LF---LGLFEIHQ------VERALKLFDEMRRN-HVAAD 462 (508)
Q Consensus 398 ~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~-l~---~~~~~~g~------~~~a~~~~~~~~~~-~~~~~ 462 (508)
.++..+ ... ....|...+..++...+.|... .... ++ ......++ ++...+++....+. +.+.+
T Consensus 160 ~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 555444 333 3456667776666554554443 1111 11 11122111 44455555543322 33334
Q ss_pred HHHHHHH-------HHHHHhcCCHHHHHHHHHHHH
Q 044044 463 TYTYNNF-------IDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 463 ~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~ 490 (508)
..+-.++ ...+.+.+++++|.++|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4332222 233567899999999998544
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.14 E-value=0.13 Score=39.48 Aligned_cols=86 Identities=12% Similarity=0.003 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNG---------EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE- 282 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 282 (508)
.++..++.++++.|+.+....+++..-..+. ..+-...|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3444455555555555555554443322210 001114566666666666666666666666666665443
Q ss_pred CCCCChhhHHHHHHHH
Q 044044 283 NINPDVVTYTSVIRGF 298 (508)
Q Consensus 283 ~~~~~~~~~~~l~~~~ 298 (508)
+++.+...|..|++-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4444555566655533
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.12 E-value=0.23 Score=47.54 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=71.9
Q ss_pred HHccCCHHHHHHHHH--HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 044044 263 LCKEGFVDKAKELFL--KMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD 340 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (508)
..-.++++++.++.. ++.. .+ +....+.++..+.+.|..+.|+++... .. .-.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence 344566666655554 1111 11 233455556656666666666655322 11 1233445566666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
.|.++.+. ..+...|..|.....+.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++.+...
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 66554332 12455666666666666666666666655431 3445555556666655555555555
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALKLFD 452 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 452 (508)
..|- ++..+.++...|+.++..+++.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 4431 2344444455566666555554
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.06 E-value=0.29 Score=43.91 Aligned_cols=169 Identities=12% Similarity=0.031 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC-----CCCCh
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN-----INPDV 288 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~ 288 (508)
.|..+.+++-+.-++.+++.+-+.-....+.-.. ..--.....+..++...+.++++++.|+...+-- .....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~--~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG--QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc--cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 4555566666666666666666655544321100 0011233345566666677788888777765431 11123
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHH-----hHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC
Q 044044 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPDVV-----TFSVIMDELCKNGKMDKASRLLELMIW----RGVN 355 (508)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~ 355 (508)
.++..|-..|.+..++++|.-...+..+. ++..-.. ....+.-++...|+...|.+.-++..+ .|-.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 45677777777778877776665554332 2111111 222334456667777777766665543 3322
Q ss_pred CC-HHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 044044 356 PN-TYTYNTLIDGYCLTDKIDHARKLFVSM 384 (508)
Q Consensus 356 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (508)
+. ......+.+.|...|+.+.|..-|++.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 21 334556667788888888877766654
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.00 E-value=0.097 Score=39.35 Aligned_cols=89 Identities=11% Similarity=-0.024 Sum_probs=70.1
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHhcCCc
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIY---THSILINCFCKMGRV 158 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 158 (508)
...|+.+.|++.|.+.+..-|. ...+||.-..++.-+|+.++|++=+++..+..-..... .|..-...|...|+-
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3557999999999999999888 78899999999999999999999999987753222222 333444556778888
Q ss_pred chHHHHHHHHHhCC
Q 044044 159 SHGFVVLGRILRSC 172 (508)
Q Consensus 159 ~~a~~~~~~~~~~~ 172 (508)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888887766
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.97 E-value=0.92 Score=39.03 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFC 299 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (508)
.-.+.|++++|.+.|+.+....+. .+-...+...++.++.+.+++++|...+++..+.-.......|..-|.+.+
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~----s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPF----SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCC----CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 345677777777777777765431 122244555566667777777777777777665422222233444444443
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.2 Score=45.77 Aligned_cols=141 Identities=15% Similarity=0.093 Sum_probs=94.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044044 328 VIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK 407 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (508)
.-.+.+.+.|++..|...|++++.. +. |...-+.++..... . .-..+++.+..+|.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~-~-------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAE-A-------LKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHH-H-------HHHHHhhHHHHHHHhhh
Confidence 3456777888888888777776542 00 11111112221111 1 12345777888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVL-EALELF 486 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~ 486 (508)
++.+|+..-.+.++.+ ++|.-....=..+|...|+++.|+..|+++.+.. +.|...-+.|+.+-.+..++. ...++|
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985 4477788888899999999999999999999863 224444555555554444443 347788
Q ss_pred HHHHH
Q 044044 487 RAIRD 491 (508)
Q Consensus 487 ~~m~~ 491 (508)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 88864
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.91 E-value=0.27 Score=37.07 Aligned_cols=90 Identities=19% Similarity=0.079 Sum_probs=43.8
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHh---HHHHHHHHHHhcC
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK-GIKPTVV---TYNTLFLGLFEIH 442 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~~~g 442 (508)
+....|+++.|++.|.+.+..- +.....||.-..++.-.|+.++|+.=+++.++. |.+ +.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3445555555555555555442 344555555555555555555555555555544 211 111 1222223344455
Q ss_pred CHHHHHHHHHHHHHCC
Q 044044 443 QVERALKLFDEMRRNH 458 (508)
Q Consensus 443 ~~~~a~~~~~~~~~~~ 458 (508)
+-+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 5555555555555444
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.87 E-value=0.49 Score=44.64 Aligned_cols=64 Identities=14% Similarity=0.009 Sum_probs=50.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHRVFACE-PDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
.+-..|..++-+.|+.++|++.++++.+.... .+..+...|+.++...+.+.++..++.+..+.
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 33455677777889999999999999865322 23457788999999999999999999997544
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=0.16 Score=43.91 Aligned_cols=99 Identities=13% Similarity=0.153 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CC-ChhhH
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENI-NP-DVVTY 291 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~-~~~~~ 291 (508)
.|+.-+.. .+.|++..|...|......++.. .-....+.-|...+...|++++|..+|..+.+.-. .| -+..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 46555554 46788999999999999886431 22334566688999999999999999998877521 11 23567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 292 TSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 292 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
-.|..+..+.|+.++|..+|+++.+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777888889999999999988876
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.69 Score=41.19 Aligned_cols=155 Identities=12% Similarity=0.120 Sum_probs=102.3
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHHhcCChh
Q 044044 264 CKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---GVQPDVVTFSVIMDELCKNGKMD 340 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 340 (508)
...|+..+|-..++++.+. .+.|...++..=.+|...|+.+.-...++++... +++-....-....-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4567888888888888776 5567777887788888889888888888887654 22212222233334556788899
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN---GCMHDVVSYNTLINWYCKNKDVEEALSLYS 417 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (508)
+|.+.-++..+.+ +.|...-.+....+.-.|++.++.+...+-... +...-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9998888887664 335666667777777788888888887654332 000011112223344566688999999886
Q ss_pred HHH
Q 044044 418 EML 420 (508)
Q Consensus 418 ~~~ 420 (508)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 253
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.79 E-value=1.5 Score=40.06 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
+.+..+.-+...|+...|.++-.+.. -|+..-|..-+.+++..++|++-..+... ..++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555667778888888888876663 46888899999999999999887775432 234577888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
+.|+..+|..+..++ + +..-+..|.++|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888761 1 245567788999999988765433
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.79 E-value=0.46 Score=36.94 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=46.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 044044 218 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRG 297 (508)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (508)
-.....+.|++++|.+.|+.+..+.+. -+-....-..++.+|.+.+++++|...+++.++.........|...+.+
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~----g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPF----GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 344445677777777777777776531 1122345556677777777777777777777665333233444444444
Q ss_pred HHh
Q 044044 298 FCY 300 (508)
Q Consensus 298 ~~~ 300 (508)
++.
T Consensus 92 L~~ 94 (142)
T PF13512_consen 92 LSY 94 (142)
T ss_pred HHH
Confidence 433
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.78 E-value=3.2 Score=43.74 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhcC--ChHHHHHHHHHHHh
Q 044044 213 FTYNTLINGLCRTG--HTIVALNLFEEMAN 240 (508)
Q Consensus 213 ~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 240 (508)
.-...++..|.+.+ .+++|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33446777777776 66777776666654
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.68 E-value=0.33 Score=43.61 Aligned_cols=227 Identities=12% Similarity=0.090 Sum_probs=132.3
Q ss_pred HccCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC---CHHhHHHHHHHHHhc
Q 044044 264 CKEGFVDKAKELFLKMKDEN--INPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--GVQP---DVVTFSVIMDELCKN 336 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~ 336 (508)
....+.++|+..+.+...+- ...--.++..+..+.++.|.+++++..--..++. .... -...|..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666766666554430 0112334556667777777777765432211110 0010 122445555555555
Q ss_pred CChhHHHHHHHHHHHc-CCCC---CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcC
Q 044044 337 GKMDKASRLLELMIWR-GVNP---NTYTYNTLIDGYCLTDKIDHARKLFVSMESNG-----CMHDVVSYNTLINWYCKNK 407 (508)
Q Consensus 337 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g 407 (508)
.++.+++.+-..-... |..| .......+..++...+.++++.+.|+...+.- .......+-.+...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 5666666655544332 2222 12334456677778888999999988876531 1123456778889999999
Q ss_pred CHHHHHHHHHHHHHC----CCCCCHh-----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHH
Q 044044 408 DVEEALSLYSEMLSK----GIKPTVV-----TYNTLFLGLFEIHQVERALKLFDEMRRN----HVAA-DTYTYNNFIDGL 473 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~----~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~ 473 (508)
|+++|.-+..++.+. ++..-.. ....|.-++...|..-.|.+.-++..+. |-.+ -......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999998877766543 3221111 2234556677888888888877776543 3222 233456677889
Q ss_pred HhcCCHHHHHHHHHHHH
Q 044044 474 CKSGFVLEALELFRAIR 490 (508)
Q Consensus 474 ~~~g~~~~A~~~~~~m~ 490 (508)
...|+.|.|..-|+...
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 99999999888877654
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.64 E-value=0.54 Score=36.55 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGC--MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.....+.|++++|.+.|+.+...-. +-....--.++.+|.+.|++++|...+++.++..+.....-|...+.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344556777777777777765521 11233445566677777777777777777776543322333444444443
No 258
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.63 E-value=0.01 Score=33.31 Aligned_cols=32 Identities=13% Similarity=0.403 Sum_probs=26.9
Q ss_pred HHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHH
Q 044044 94 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVL 127 (508)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 127 (508)
|+++++.+|. +..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677778887 8889999999999999988885
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.61 E-value=1.7 Score=41.18 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 399 LINWYCKNKDVEEALSLYSEMLSKGIK-PTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
+..++-+.|+.++|++.++++.+.... .+......|+.++...+.+.++..++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444444555555555555555543211 122244455555555555555555555543
No 260
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=2.8 Score=41.76 Aligned_cols=358 Identities=13% Similarity=0.091 Sum_probs=195.6
Q ss_pred hccCCCCCCCCChHHHHHHHHHhHHcCCC-------CCCcc-----cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 044044 75 KSSGQGDINLITPNEALCIFDYMLRMHPS-------PPPVS-----SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDI 142 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 142 (508)
.+-|..++..-++++-..+...+.-.+-. |.+.. .-..++.-+...+.+..|+++-..+...-..- .
T Consensus 393 AsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~ 471 (829)
T KOG2280|consen 393 ASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-D 471 (829)
T ss_pred HhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-c
Confidence 45677777777888777776665433211 11222 22345666777889999999988775322111 4
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHHhC-CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC----CCHhhHH
Q 044044 143 YTHSILINCFCKMGRVSHGFVVLGRILRS-CF-TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE----PDVFTYN 216 (508)
Q Consensus 143 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~ 216 (508)
..|.....-+.+..+.. -..+++.+.+. +. .-....|..+.+-...+|+++-|..+++.=...+.. .+..-+.
T Consensus 472 ~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~ 550 (829)
T KOG2280|consen 472 RVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSS 550 (829)
T ss_pred HHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHH
Confidence 55555555555553221 12233333221 11 134556777777777889999999888742222100 0122234
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-----cccCCHhHHHHHHH--------HHHccCCHHHHHHHH--HHHhh
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGNGEFGV-----VCKPNTVTYNTIID--------GLCKEGFVDKAKELF--LKMKD 281 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~--------~~~~~g~~~~a~~~~--~~~~~ 281 (508)
..+.-+.+.|+.+-...++-.+...-..... ..+.....|.-+++ .+.+.++-.++...| +....
T Consensus 551 ~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~ 630 (829)
T KOG2280|consen 551 LALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYA 630 (829)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhh
Confidence 4455566777777666666555442200000 01111222222222 111122222222211 11000
Q ss_pred C-CCCCChhhHHHHHHHHHhcCCHHH----------HHHHHHHHHH-cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 044044 282 E-NINPDVVTYTSVIRGFCYANDWNE----------AKRLFIEMMD-QGVQPDVVTFSVIMDELCKNGKMDKASRLLELM 349 (508)
Q Consensus 282 ~-~~~~~~~~~~~l~~~~~~~g~~~~----------a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 349 (508)
. .+.+-..........+.+.....- -+.+.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.
T Consensus 631 ~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F 710 (829)
T KOG2280|consen 631 AETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF 710 (829)
T ss_pred hhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc
Confidence 0 011111222333444444433111 1122222221 122333345556666778889999999888776
Q ss_pred HHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044044 350 IWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV 429 (508)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (508)
. -||...|-.-+.+++..+++++-+++-+... .+.-|.-.+.+|.+.|+.++|.+++.+.... .
T Consensus 711 k----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~- 774 (829)
T KOG2280|consen 711 K----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q- 774 (829)
T ss_pred C----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H-
Confidence 4 5688899889999999999988776655433 2456777889999999999999998664321 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDE 453 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~ 453 (508)
-...+|.+.|++.+|.++--+
T Consensus 775 ---ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 775 ---EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ---HHHHHHHHhccHHHHHHHHHH
Confidence 466788899999998886543
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=2.5 Score=42.74 Aligned_cols=151 Identities=16% Similarity=0.115 Sum_probs=92.1
Q ss_pred HHHHhhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 044044 70 LKERCKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILI 149 (508)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 149 (508)
+.+..+.-|.-+...|++++|...|-+.+..-. -..++.-+....+..+-..+++.+.+.|+. +...-..|+
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le-------~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLL 438 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE-------PSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLL 438 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC-------hHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHH
Confidence 334444555566788999999988877654321 234566677777788888899999998854 555567888
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChH
Q 044044 150 NCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTI 229 (508)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 229 (508)
.+|.+.++.+.-.+..+... .|.- ..-....+..+.+.+-.++|..+-.+... +......+ +-..++++
T Consensus 439 ncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~ 507 (933)
T KOG2114|consen 439 NCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYE 507 (933)
T ss_pred HHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHH
Confidence 99999998877666655433 1111 11133445555555666666555444322 22222222 23456667
Q ss_pred HHHHHHHHHH
Q 044044 230 VALNLFEEMA 239 (508)
Q Consensus 230 ~A~~~~~~~~ 239 (508)
+|++++..+.
T Consensus 508 eAl~yi~slp 517 (933)
T KOG2114|consen 508 EALRYISSLP 517 (933)
T ss_pred HHHHHHhcCC
Confidence 7766665553
No 262
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=0.66 Score=37.06 Aligned_cols=123 Identities=12% Similarity=0.048 Sum_probs=52.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHH---HHHHHHhcCCHH
Q 044044 119 KNKHYDTVLSLFKRLNSAGLFPDI-YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTS---LIKGLCAESRIM 194 (508)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 194 (508)
+.+..++|+.-|..+.+.|...-+ -..........+.|+...|...|+++-.....|-..--.+ -.-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 344455555555555544422111 1111122233444555555555555544322222110000 111233445555
Q ss_pred HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 195 EAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 195 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
......+-+...+-+.-...-..|.-+-.+.|++.+|.++|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 55555555444333333334445555555556666666666555543
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.16 E-value=1.9 Score=37.16 Aligned_cols=87 Identities=21% Similarity=0.120 Sum_probs=36.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEA 482 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 482 (508)
+...++.+++...+.+............+..+...+...++++.+...+......... ....+..+...+...|..+++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHH
Confidence 3444455555555555444311102334444444444555555555555544443111 122222233333344445555
Q ss_pred HHHHHHHH
Q 044044 483 LELFRAIR 490 (508)
Q Consensus 483 ~~~~~~m~ 490 (508)
...+++..
T Consensus 256 ~~~~~~~~ 263 (291)
T COG0457 256 LEALEKAL 263 (291)
T ss_pred HHHHHHHH
Confidence 55444444
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.02 E-value=0.072 Score=31.98 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=22.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSI 147 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 147 (508)
+|..+...|.+.|++++|.++|+++++.. +-|...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 45566666666666666666666666652 334444433
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.93 E-value=0.11 Score=31.23 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=10.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC
Q 044044 363 TLIDGYCLTDKIDHARKLFVSMESN 387 (508)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (508)
.+...|...|++++|+++|+++.+.
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.87 E-value=2.3 Score=36.62 Aligned_cols=97 Identities=19% Similarity=0.070 Sum_probs=46.5
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhh
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANG-NGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVT 290 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (508)
...+......+...+++..+...+...... . .......+......+...++++.+.+.+.........+ ...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 131 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELEL------LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLA 131 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh------ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chH
Confidence 344455555555566666666655555431 1 12334445555555555555666666665555432221 111
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHH
Q 044044 291 YTSVIR-GFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 291 ~~~l~~-~~~~~g~~~~a~~~~~~~~ 315 (508)
...... .+...|+++.+...+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 132 EALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111111 4445555555555555553
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.85 E-value=0.8 Score=36.39 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
++.+++..+++.+.-..|..+...++...+ +...|+|.+|+.+|+++...+ |.......|+..|....+-..-...
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~~ 99 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRRY 99 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHHH
Confidence 488999999999998888855555555444 578899999999999987653 4333344444444433322222233
Q ss_pred HHHHHhCC
Q 044044 165 LGRILRSC 172 (508)
Q Consensus 165 ~~~~~~~~ 172 (508)
-+++...+
T Consensus 100 A~evle~~ 107 (160)
T PF09613_consen 100 ADEVLESG 107 (160)
T ss_pred HHHHHhcC
Confidence 33445443
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.84 E-value=2.8 Score=37.61 Aligned_cols=165 Identities=10% Similarity=0.112 Sum_probs=82.3
Q ss_pred hcCCHHHHHHHHHHhhhcC--CCCCH-----hhHHHHHHHHHhcC-ChHHHHHHHHHHHhC----CCCCCccccCCH---
Q 044044 189 AESRIMEAAALFTKHRVFA--CEPDV-----FTYNTLINGLCRTG-HTIVALNLFEEMANG----NGEFGVVCKPNT--- 253 (508)
Q Consensus 189 ~~g~~~~A~~~~~~~~~~~--~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~~~~~~~~~~~~--- 253 (508)
+.|+++.|..++.+..... ..|+. ..+..+.......+ +++.|..++++..+. +... ...++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~--~~~~~~~el 82 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD--KLSPDGSEL 82 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc--ccCCcHHHH
Confidence 4566666666666654432 12221 11222333344455 888887777765543 1100 012222
Q ss_pred --hHHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 044044 254 --VTYNTIIDGLCKEGFVD---KAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSV 328 (508)
Q Consensus 254 --~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 328 (508)
.+...++.+|...+..+ +|.++++.+.... +-.+..+..-+..+.+.++.+++.+++.+|...- ......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 34555666776666544 4555555554432 2234455555666666778888888888887752 212334444
Q ss_pred HHHHHHh--cCChhHHHHHHHHHHHcCCCCC
Q 044044 329 IMDELCK--NGKMDKASRLLELMIWRGVNPN 357 (508)
Q Consensus 329 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~ 357 (508)
++..+.. ......+...+..++...+.|.
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 4443321 1223445555555544434433
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=2.3 Score=36.31 Aligned_cols=206 Identities=16% Similarity=0.146 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDEL 333 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (508)
..|..-..+|....++++|...+.+..+. ...+...|. ....++.|.-+.+++.+. ..-...|+--...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555566777778888888877776532 111222221 122344455555555443 11123445555566
Q ss_pred HhcCChhHHHHHHHHHHHc--CCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 334 CKNGKMDKASRLLELMIWR--GVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV 409 (508)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (508)
...|.++.|-..+++.-+. ++.|+ ...|..-+......++...|.+ .+......+.+...+
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e---------------l~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE---------------LYGKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH---------------HHHHhhhHhhhhHHh
Confidence 6777766666665554331 22232 1122222222222222222222 233334445555555
Q ss_pred HHHHHHHHHHHHC----CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 044044 410 EEALSLYSEMLSK----GIKPTV-VTYNTLFLGLFEIHQVERALKLFDEMRRNH---VAADTYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 410 ~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 481 (508)
++|-..+.+-... .--++. ..|...|-.+....++..|.+.++.-.+.+ -.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 5555444332211 001111 234445555666667777777776644321 223455666677666 4566666
Q ss_pred HHHH
Q 044044 482 ALEL 485 (508)
Q Consensus 482 A~~~ 485 (508)
+.++
T Consensus 246 ~~kv 249 (308)
T KOG1585|consen 246 IKKV 249 (308)
T ss_pred HHHH
Confidence 5554
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.78 E-value=1.6 Score=34.39 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=82.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 187 (508)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (508)
.....++..+...+........++.+...+ ..+...++.++..+++.+. .+..+.+.. . .+......+++.|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHH
Confidence 345567777777788888889998888776 4677788888888887643 333333331 1 2333444567777
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT-GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
.+.+.++++.-++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------------NNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------------CCHHHHHHHHHHHHc
Confidence 777888888888876532 22233444444 7788888877651 245677777766553
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.73 E-value=1.8 Score=34.75 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=57.5
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHh-HHH--HHHHHHH
Q 044044 189 AESRIMEAAALFTKHRVFACEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV-TYN--TIIDGLC 264 (508)
Q Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~--~l~~~~~ 264 (508)
+.+..++|+.-|..+.+.|...- +...........+.|+...|...|+++-... ..|-.. -.. .-.-.+.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHh
Confidence 34555556666655555432211 1112223334455666666666666665543 122211 111 1112234
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 265 KEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
..|.|+++..-.+-+...+.+.-...-..|.-+-.+.|++..|...|.++..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4566666655555554443333333344444455566666666666666554
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.70 E-value=1.4 Score=33.49 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHV 459 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 459 (508)
....+......|+-+.-.+++.++... -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445555555555555555555432 234455555555555555555555555555555543
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.69 E-value=0.38 Score=42.36 Aligned_cols=80 Identities=5% Similarity=0.043 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR-----NHVAADTYTY 466 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 466 (508)
-..++..++..+...|+++.+...++++.+..+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3556677777778888888888888888876433 667788888888888888888888877664 4777777666
Q ss_pred HHHHHH
Q 044044 467 NNFIDG 472 (508)
Q Consensus 467 ~~li~~ 472 (508)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 655544
No 274
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.65 E-value=5.4 Score=39.93 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----hcCCH
Q 044044 373 KIDHARKLFVSMESNGCMHDVVSYNTLINWYCKN----KDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF----EIHQV 444 (508)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~ 444 (508)
+.+.+...+.+....| +......+...|..- .+++.|...+......+ ......+...+. ... +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 4555555555555543 444444454444322 34666666666665553 222222332221 122 5
Q ss_pred HHHHHHHHHHHHC
Q 044044 445 ERALKLFDEMRRN 457 (508)
Q Consensus 445 ~~a~~~~~~~~~~ 457 (508)
..|.+++++..+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 6677777666654
No 275
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.64 E-value=4.2 Score=42.92 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV----TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLID 366 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (508)
|.-.++.-.+.|.+.+|+.++ .|+.. .|......+.....+++|.-+|+..-+ ..-.+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHH
Confidence 333344444555666665554 34443 344444455566677777666655421 123456
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMHDVVS--YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQV 444 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 444 (508)
+|..+|+|.+|+.+..++... .+... -..|+.-+...+++-+|-++..+.... | ...+..+++...+
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHH
Confidence 677778888877777766432 12222 245666677777777777777666542 1 1223334455556
Q ss_pred HHHHHHHHH
Q 044044 445 ERALKLFDE 453 (508)
Q Consensus 445 ~~a~~~~~~ 453 (508)
++|+++-..
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 666655433
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.60 E-value=3.3 Score=37.35 Aligned_cols=133 Identities=14% Similarity=0.263 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh--cC----ChhHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHcCCC-
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK--NG----KMDKASRLLELMIWRGV---NPNTYTYNTLIDGYCLTDK- 373 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 373 (508)
+++...+++.|.+.|+.-+..+|-+....... .. ....+..+|+.|.+... .++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456667777777776666555443222222 11 24467778888877643 2344455555433 2333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 374 ---IDHARKLFVSMESNGCMHDV--VSYNTLINWYCKNKD--VEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 374 ---~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
.+.++.+|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.|+++....|..++-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35567777777776655432 333333333322222 446778888888888887777766555443
No 277
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.57 E-value=4.2 Score=38.34 Aligned_cols=121 Identities=8% Similarity=-0.033 Sum_probs=82.1
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|+...|-+-...+++..|..|+ ............|+++.+.+.+....+. +.....+...+++...+.|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 346777775555556666666344 3334444567889999999998777543 3445567788889999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA 207 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (508)
..-+-|+...++ +...........-..|-++++.-.++++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999988876554 33333332333344577888888888876654
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.56 E-value=3.4 Score=37.29 Aligned_cols=148 Identities=13% Similarity=0.178 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCCh
Q 044044 269 VDKAKELFLKMKDENINPDVVTYTSVIRGFCY--AN----DWNEAKRLFIEMMDQGV---QPDVVTFSVIMDELCKNGKM 339 (508)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 339 (508)
+++...+++.+.+.|+..+..+|-+....... .. ....+..+|+.|.+... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788899999998887766653333322 22 35678999999998742 3344555555433 33333
Q ss_pred ----hHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 340 ----DKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDK--IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEE 411 (508)
Q Consensus 340 ----~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (508)
+.+..+|+.+.+.|...+ ......++........ ..++.++++.+.+.|++.....|..++-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 466778888888776544 3344444433332222 45788999999999998888888777655444444334
Q ss_pred HHHHHHH
Q 044044 412 ALSLYSE 418 (508)
Q Consensus 412 A~~~~~~ 418 (508)
...-+.+
T Consensus 236 ~~~~i~e 242 (297)
T PF13170_consen 236 IVEEIKE 242 (297)
T ss_pred HHHHHHH
Confidence 4443333
No 279
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.28 E-value=7.1 Score=39.76 Aligned_cols=165 Identities=14% Similarity=0.066 Sum_probs=81.8
Q ss_pred hhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCccccCCH-----hHHHHHHHHHHccCCHHHHHHHHHHHhhC----
Q 044044 213 FTYNTLINGLC-RTGHTIVALNLFEEMANGNGEFGVVCKPNT-----VTYNTIIDGLCKEGFVDKAKELFLKMKDE---- 282 (508)
Q Consensus 213 ~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 282 (508)
.++..+...+. ...++++|...+.+...... .++. .....++..+.+.+... |...+++..+.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~------~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCE------RHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 34555555555 46677777777776654331 1111 12234455566655544 77777665543
Q ss_pred CCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHHHcCC--
Q 044044 283 NINPDVVTYTSV-IRGFCYANDWNEAKRLFIEMMDQG---VQPDVVTFSVIMDEL--CKNGKMDKASRLLELMIWRGV-- 354 (508)
Q Consensus 283 ~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~-- 354 (508)
+..+-...|..+ +..+...+++..|.+.++.+...- ..+...++..++.+. .+.+..+++.+.++.+.....
T Consensus 133 ~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 133 GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 111122223333 222223367777777777765532 122233333344433 344555666666665533211
Q ss_pred -------CCCHHhHHHHHHHH--HcCCCHHHHHHHHHHH
Q 044044 355 -------NPNTYTYNTLIDGY--CLTDKIDHARKLFVSM 384 (508)
Q Consensus 355 -------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 384 (508)
.|...+|..+++.+ ...|+++.+...++++
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22345555555543 3466666665555444
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.25 E-value=0.63 Score=38.34 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH----H
Q 044044 394 VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRRN---HVAADT----Y 464 (508)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~----~ 464 (508)
..+..++..|++.|+.++|++.|.++.+....+. ...+..++......+++..+...+.+.... +-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3456667777777777777777777766533322 334556666677777777777776665532 111111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.|..+ .+...|++.+|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 22222 2345678888877776654
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.08 E-value=0.6 Score=40.49 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=55.9
Q ss_pred CCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 044044 321 PDVVTFSVIMDELCK-----NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (508)
-|..+|...+..+.. .+.++=....++.|.+-|+.-|..+|+.|++.+=+..- .|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 355566666655543 24445555556666667777777777777665433211 1110 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (508)
+....-.|- .+-+-+++++++|...|+-||..+-..|+.++.+.+-
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 1234466777777777777777777777777766553
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.03 E-value=0.073 Score=30.25 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 466 YNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 466 ~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
|..|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666777777777777776644
No 283
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.96 E-value=0.6 Score=40.50 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCHhHHHHHHHHHHc-----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 044044 251 PNTVTYNTIIDGLCK-----EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFC 299 (508)
Q Consensus 251 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (508)
.|..+|...+..+.. .+..+-....+..|.+-|+..|..+|+.|++.+-
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 345555555555543 3456666666777777777777777777777653
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.67 E-value=8.5 Score=38.56 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI----HQVERALKLFDEMRRNHVAADTYTYNNFIDGLC----KSGFV 479 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~ 479 (508)
+.+.+...+.+....| +......|...|..- .+++.|...+......+ ....|+ +...+. -.. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-h
Confidence 4556666666665554 344444454444332 34677777776666554 222332 222221 122 5
Q ss_pred HHHHHHHHHHHHcC
Q 044044 480 LEALELFRAIRDSK 493 (508)
Q Consensus 480 ~~A~~~~~~m~~~g 493 (508)
..|.+++....+.+
T Consensus 526 ~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 526 HLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHhcC
Confidence 67777777776543
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.61 E-value=0.19 Score=28.48 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSE 418 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~ 418 (508)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.60 E-value=1.1 Score=39.64 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=51.7
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS-----KGIKPTVVTYNT 433 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 433 (508)
.++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566666677777777777777777665 55666777777777777777777777766654 366666665554
Q ss_pred HHHH
Q 044044 434 LFLG 437 (508)
Q Consensus 434 l~~~ 437 (508)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.42 E-value=3 Score=34.34 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSME 385 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (508)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555566666666666666666555433332 2334455555555666666555555443
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.95 E-value=0.15 Score=28.55 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEAL 413 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~ 413 (508)
|.+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555555555555555555543
No 289
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.54 E-value=9.4 Score=35.96 Aligned_cols=95 Identities=21% Similarity=0.155 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHH----HHHH---hcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--H
Q 044044 407 KDVEEALSLYSEMLSKGIKPTVVTYNTLF----LGLF---EIHQVERALKLFDEMRRNHVAAD----TYTYNNFIDG--L 473 (508)
Q Consensus 407 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~----~~~~---~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~--~ 473 (508)
+.-++|+++++.+.+-. .-|...-+.+. ..|. ....+..-.++-+-+.+.|++|- ...-|.|.++ +
T Consensus 394 ~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 33788888888887742 12333322222 1222 12223333344344456677663 3455666654 5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCccCHHHHHHH
Q 044044 474 CKSGFVLEALELFRAIRDSKYELNIVSYNCL 504 (508)
Q Consensus 474 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 504 (508)
...|++.++.-.-.-+. .+.|+..+|+.+
T Consensus 473 ysqgey~kc~~ys~WL~--~iaPS~~~~RLl 501 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLT--KIAPSPQAYRLL 501 (549)
T ss_pred HhcccHHHHHHHHHHHH--HhCCcHHHHHHH
Confidence 67899998876544444 478888888654
No 290
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.49 E-value=14 Score=37.71 Aligned_cols=404 Identities=13% Similarity=0.075 Sum_probs=199.7
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcc-----cHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHHhHHHH-HHHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVS-----SFNILFGCLAKNKHYDTVLSLFKRLNSAG----LFPDIYTHSIL-INCFC 153 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l-~~~~~ 153 (508)
..+++.|...+++....... ++.. .-..++..+.+.+... |...+++.++.- ..+-...|..+ +..+.
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred cCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 35789999999988655433 2221 2334556666655555 998888876532 12223333443 23333
Q ss_pred hcCCcchHHHHHHHHHhCC---CCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHhhhcCC---------CCCHhhHHHHH
Q 044044 154 KMGRVSHGFVVLGRILRSC---FTPNAVTFTSLIKGLC--AESRIMEAAALFTKHRVFAC---------EPDVFTYNTLI 219 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~ 219 (508)
..++...|.+.++.+.... ..+...++-.++.+.. +.+..+++++.++++..... .|-..+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 4479999999998876532 2344444444554433 44666777777776633211 23455677776
Q ss_pred HHHH--hcCChHHHHHHHHHHHh-------CC------CCCCcccc-----------CCHhHH---------HHHHH--H
Q 044044 220 NGLC--RTGHTIVALNLFEEMAN-------GN------GEFGVVCK-----------PNTVTY---------NTIID--G 262 (508)
Q Consensus 220 ~~~~--~~g~~~~A~~~~~~~~~-------~~------~~~~~~~~-----------~~~~~~---------~~l~~--~ 262 (508)
+.++ ..|+++.+...++++.. .. ++....++ +....| .-++. .
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~ 310 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLH 310 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHH
Confidence 6554 56776666665554432 11 00000000 111111 11122 2
Q ss_pred HHccCCHHHHHHHHHHHhhC--------CCCCC--------hhhHHHHHH---------HHHhcCCHHHHHHHHHHHHHc
Q 044044 263 LCKEGFVDKAKELFLKMKDE--------NINPD--------VVTYTSVIR---------GFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~--------~~~~~--------~~~~~~l~~---------~~~~~g~~~~a~~~~~~~~~~ 317 (508)
.+..+..+.|.+++++..+. ...+. ...|...+. ..+-.+++..|...++.+.+.
T Consensus 311 ~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 311 NLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQL 390 (608)
T ss_pred HhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 23344444665555554221 11111 111222222 123468899999999988864
Q ss_pred CC-CCC-------HHhHHHHHHHHHhcCChhHHHHHHH--------HHHHcCCCCCHHhHHHH--HHHHHc--CCCHHH-
Q 044044 318 GV-QPD-------VVTFSVIMDELCKNGKMDKASRLLE--------LMIWRGVNPNTYTYNTL--IDGYCL--TDKIDH- 376 (508)
Q Consensus 318 ~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--~~~~~~--~g~~~~- 376 (508)
.. .|+ ...+....-.+...|+.+.|...|. .....+...+..++..+ +-.+.. ....++
T Consensus 391 ~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 391 CQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 21 111 1222222334456799999999997 44445555444444332 112222 222333
Q ss_pred -HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHHhcCC--HHHHHHHHHHHHHCC---CCC---CHhHHHHHHHHHHhcCC
Q 044044 377 -ARKLFVSMESN-GCMH--DVVSYNTL-INWYCKNKD--VEEALSLYSEMLSKG---IKP---TVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 377 -A~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g~--~~~A~~~~~~~~~~~---~~p---~~~~~~~l~~~~~~~g~ 443 (508)
+.++++.+... .-.+ +..++..+ +.++..... ..++...+.+..+.- ... -..+++.|...+. .|+
T Consensus 471 ~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~ 549 (608)
T PF10345_consen 471 ELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGD 549 (608)
T ss_pred HHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCC
Confidence 67777766542 1122 23333333 333322211 224444443322211 111 1223344444444 677
Q ss_pred HHHHHHHHHHHHHC---CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHH
Q 044044 444 VERALKLFDEMRRN---HVAADTYTYN-----NFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 444 ~~~a~~~~~~~~~~---~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
..+..+........ ...-....|. .+.+.+...|+.++|.....+..
T Consensus 550 ~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 550 VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 77766555443321 1111344553 33445778899999999887765
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.44 E-value=0.8 Score=40.89 Aligned_cols=94 Identities=11% Similarity=-0.054 Sum_probs=69.2
Q ss_pred hccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 75 KSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK 154 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (508)
...|..|+.+|.+++|++.|.......|. |..++..-..+|.+...+..|..=.+..+..+ ..-...|..-+.+-..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~--NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH--NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARES 177 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC--CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 56788999999999999999999888876 88888888899999999988877776666432 1112234444444445
Q ss_pred cCCcchHHHHHHHHHhC
Q 044044 155 MGRVSHGFVVLGRILRS 171 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~ 171 (508)
.|...+|.+-++.+++.
T Consensus 178 Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLAL 194 (536)
T ss_pred HhhHHHHHHhHHHHHhh
Confidence 56677777777777665
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.38 E-value=3.7 Score=32.15 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=43.3
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAG 137 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 137 (508)
.++++++..+++.+.-..|..+...++...+ +...|+|.+|+.+|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 5689999999999999999866666666555 578899999999999998764
No 293
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=1.8 Score=41.90 Aligned_cols=149 Identities=19% Similarity=0.133 Sum_probs=99.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 044044 266 EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRL 345 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 345 (508)
.|+++.|-.++..+. ....+.++..+.+.|..++|+++- +|... -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 455555554443332 234556677777788888777652 23221 23345678899998887
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 044044 346 LELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK 425 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 425 (508)
..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+.-..+-....+.|..
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 76543 667799999999999999999999887653 445666777778877666666666665532
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 426 PTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
|....+|...|+++++.+++..-
T Consensus 725 ------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 ------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------chHHHHHHHcCCHHHHHHHHHhc
Confidence 33344677889999998887654
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.18 E-value=5.1 Score=32.00 Aligned_cols=52 Identities=15% Similarity=-0.010 Sum_probs=27.5
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 369 CLTDKIDHARKLFVSMESNGCMHDV-VSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.+.++.+++..++..+.-.. |.. ..-..-...+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666665542 222 22222233455666666666666666554
No 295
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.00 E-value=12 Score=35.83 Aligned_cols=98 Identities=11% Similarity=0.161 Sum_probs=70.3
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHHH
Q 044044 391 HDVVS-YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF--EIHQVERALKLFDEMRRN-HVAADTYTY 466 (508)
Q Consensus 391 ~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 466 (508)
++..+ -+.++..+.+.|-..+|...+..+... ++|+...|..+++.-. ..-+..-+.++++.|... | .|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 44433 356777788888899999999998886 5667777777765322 112377788888888754 5 577888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.-.+.--...|..+.+-.++.+...
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 8777777788988888888777654
No 296
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.96 E-value=3.2 Score=34.49 Aligned_cols=79 Identities=13% Similarity=0.008 Sum_probs=46.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN---HVAADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~ 479 (508)
+.+.|+ ++|.+.|-.+...+.--++.....|+..| ...+.+++++++.+..+. +-.+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 56666666666554443444444444333 356667777777666543 2355677777777777777777
Q ss_pred HHHH
Q 044044 480 LEAL 483 (508)
Q Consensus 480 ~~A~ 483 (508)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7664
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=2.3 Score=41.29 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=67.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC 188 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (508)
..+.++..+.++|-.++|+++ .+|... -.....+.|+++.|.++..+. .+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 344555555566666655544 122211 122334556666666655443 24556666666666
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCC
Q 044044 189 AESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGF 268 (508)
Q Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (508)
+.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.+ ..|...-+|...|+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g------------~~N~AF~~~~l~g~ 736 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG------------KNNLAFLAYFLSGD 736 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc------------ccchHHHHHHHcCC
Confidence 66777777666665443 3344455555555554444444444433 11222334455666
Q ss_pred HHHHHHHHHH
Q 044044 269 VDKAKELFLK 278 (508)
Q Consensus 269 ~~~a~~~~~~ 278 (508)
++++.+++.+
T Consensus 737 ~~~C~~lLi~ 746 (794)
T KOG0276|consen 737 YEECLELLIS 746 (794)
T ss_pred HHHHHHHHHh
Confidence 6666666544
No 298
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=1.3 Score=39.06 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=70.7
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044044 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG---CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV 429 (508)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (508)
|......+...++..-....+++.++..+-+++..- ..++.. -.+.++.+ ..-+.++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 444455556666666666778888888887776531 011111 11223333 3346778888888888889999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+++.+++.+.+.+++.+|..+.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999988888777654
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.77 E-value=6 Score=32.00 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHH
Q 044044 310 LFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKA 342 (508)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 342 (508)
.++.+.+.+++|+...+..+++.+.+.|++...
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L 48 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL 48 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344444555556666666666666666654433
No 300
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.44 E-value=9.5 Score=33.66 Aligned_cols=72 Identities=8% Similarity=0.098 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCccCHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR-----DSKYELNIVSYN 502 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 502 (508)
++......|..+|.+.+|.++.++....+ +.+...|..++..+...|+--.|.+-++++. +.|+..+..+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34556678899999999999999998863 4577888899999999999888888888875 458887776654
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.42 E-value=12 Score=34.87 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=25.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHH
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRIL 169 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 169 (508)
..+..+.|+|+...+........ .++...+..+... ..++++++...++.+.
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 34555667777644444443321 1233333333322 5666666666655544
No 302
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.32 E-value=0.017 Score=45.99 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=49.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 113 LFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 192 (508)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (508)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+.....++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555666777777777777776554556677777777777777666666665511 11222345555556666
Q ss_pred HHHHHHHHHHh
Q 044044 193 IMEAAALFTKH 203 (508)
Q Consensus 193 ~~~A~~~~~~~ 203 (508)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 303
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.30 E-value=13 Score=35.01 Aligned_cols=130 Identities=17% Similarity=0.248 Sum_probs=102.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRG-VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS-YNTLIN 401 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~ 401 (508)
.+|...++...+....+.|..+|-+..+.+ +.+++.++++++..++ .|+..-|..+|+--... -||... -+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777888888888999999999999988 6778889999998776 57888999999876665 344444 456677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 402 WYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.+...++-+.|..+|+..+++ +..+ ...|..++.--..-|+...+..+=+.|.+.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 788899999999999976654 2223 567899998888999998888887777763
No 304
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.29 E-value=12 Score=34.49 Aligned_cols=146 Identities=11% Similarity=0.011 Sum_probs=99.2
Q ss_pred HHHHhHHcCCCCCCcccHHHHHHHHHhcCC------------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 93 IFDYMLRMHPSPPPVSSFNILFGCLAKNKH------------YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
-|++.++.+|. |+.+|-.++..--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.+.
T Consensus 7 el~~~v~~~P~--di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 7 ELNRRVRENPH--DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHhCcc--cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHH
Confidence 45666777777 88888888865443221 456688899988874 5677778888899998888888
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHhhhc------CC----CCC-------HhhHHHHHH
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCA---ESRIMEAAALFTKHRVF------AC----EPD-------VFTYNTLIN 220 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~------~~----~~~-------~~~~~~l~~ 220 (508)
..+.+++++... +-+...|...+..... .-.+.....+|.+.... +. .+. ..++..+..
T Consensus 84 l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 84 LAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 888999998763 3367778877765543 23455666666553321 11 011 122334444
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 044044 221 GLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
.+.+.|..+.|+.+++.+.+-+
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHH
Confidence 5567899999999999998865
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.24 E-value=2.4 Score=39.92 Aligned_cols=123 Identities=12% Similarity=0.017 Sum_probs=71.6
Q ss_pred HHHhcCChhHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 332 ELCKNGKMDKASRLLELMIWR-GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVE 410 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (508)
--...|+.-.|.+-+...++. .-.|+..... ...+...|+++.+...+...... +.....+...+++...+.|+++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 344556666655544444333 2233433333 33455677888777777655433 1234455667777777778888
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 411 EALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
+|..+-+.|+...+. +...........-..|-++++.-.|+++...+
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888877777766554 44444443334445566777777777776653
No 306
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.11 E-value=8.4 Score=32.41 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
+.+||.+.--+...|+++.|.+.|+...+.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 3455555555556666666666666665544
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.89 E-value=0.74 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555666666666666665554
No 308
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.88 E-value=2.4 Score=30.19 Aligned_cols=62 Identities=10% Similarity=0.169 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFI 470 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 470 (508)
|.=++.+-+..+....+.|++....+.+++|.+.+++..|+++|+-.+.+ ...+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 34455666666666667777777777777777777777777777766633 112333455444
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=21 Score=36.29 Aligned_cols=101 Identities=12% Similarity=0.097 Sum_probs=56.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 115 GCLAKNKHYDTVLSLFKRLNSAGLFP---DIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 191 (508)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (508)
.-+.+.+.+++|+++.+..... .| -...+...|..+...|++++|-...-.|... +..-|..-+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 3455677788888777665432 33 2345666777777778888877777777643 4555555555555544
Q ss_pred CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh
Q 044044 192 RIMEAAALFTKHRVFACEPDVFTYNTLINGLCR 224 (508)
Q Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (508)
+......+ +.......+...|..++..+..
T Consensus 438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 43322221 2221112344556666665554
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.66 E-value=9.8 Score=32.43 Aligned_cols=25 Identities=4% Similarity=0.157 Sum_probs=16.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 296 RGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 296 ~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
..-...+++.+|+.+|+++....+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344567788888888887765443
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.65 E-value=23 Score=36.63 Aligned_cols=322 Identities=12% Similarity=0.032 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHhCCCC-------CCHHhHHHHHHHHHhc----CCcchHHHHHHHH----HhCCCCCCHHhHHHHHHHHH
Q 044044 124 DTVLSLFKRLNSAGLF-------PDIYTHSILINCFCKM----GRVSHGFVVLGRI----LRSCFTPNAVTFTSLIKGLC 188 (508)
Q Consensus 124 ~~A~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 188 (508)
+....+++++...|+. +.-+.|..++.-+.+. +...+..+++..+ ...|.+ + -.|....
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~-~-----eAI~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLP-S-----EAIDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCCh-H-----HHHHHHH
Confidence 3456778888777743 2334555555444332 1223333443333 223321 1 2233445
Q ss_pred hcCCHHHHHHHHHHhhhc---C-----------CCCCHhhH----HHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCcc
Q 044044 189 AESRIMEAAALFTKHRVF---A-----------CEPDVFTY----NTLING--LCRTGHTIVALNLFEEMANGNGEFGVV 248 (508)
Q Consensus 189 ~~g~~~~A~~~~~~~~~~---~-----------~~~~~~~~----~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~ 248 (508)
+.|+++.|-.++++.... + .-|+.... -.+..+ .....++++|..+..++...-+..+
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~-- 449 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPM-- 449 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCc--
Confidence 567777777777664111 0 01221111 112222 3457889999999988876542110
Q ss_pred ccCCH---hHHHHHH-HHHHccCCHHHHHHHHHHHhhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 249 CKPNT---VTYNTII-DGLCKEGFVDKAKELFLKMKDE----NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 249 ~~~~~---~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
..+.. ..++.+- ......|++++|.++-+..... -..+....+..+..+..-.|++++|..+..+..+.--.
T Consensus 450 ~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 450 HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 01111 1333332 2334578899999888877654 22334566777778888899999999998877654222
Q ss_pred CCHHhHHHH-----HHHHHhcCChh--HHHHHHHHHHHcC---C---CCCHHhHHHHHHHHHcC-CCHHHHHHHHHHHHh
Q 044044 321 PDVVTFSVI-----MDELCKNGKMD--KASRLLELMIWRG---V---NPNTYTYNTLIDGYCLT-DKIDHARKLFVSMES 386 (508)
Q Consensus 321 ~~~~~~~~l-----~~~~~~~~~~~--~a~~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 386 (508)
-+...+..+ ...+...|+.. +....+....... . .+-..++..++.++.+. +...++..-+.....
T Consensus 530 ~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~ 609 (894)
T COG2909 530 HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSV 609 (894)
T ss_pred cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhh
Confidence 233333222 22455566332 2222333222211 1 11233444555555541 222223333332222
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHhHHHHHHHH--HHhcCCHHHHHHHHHH
Q 044044 387 NGCMHDVVS--YNTLINWYCKNKDVEEALSLYSEMLSKGIKP----TVVTYNTLFLG--LFEIHQVERALKLFDE 453 (508)
Q Consensus 387 ~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 453 (508)
....+-... +..|+......|+.++|...+.++......+ +..+-...+.. -...|+.+++.....+
T Consensus 610 ~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 610 YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 221221222 2356778889999999999999887653222 22222222222 2367788877777665
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.65 E-value=8.6 Score=31.77 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=47.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKP--TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGF 478 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 478 (508)
..+...|++++|+.-++..+...... ...+--.|.......|.+++|+..++...+.++ .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 34556666666666666555431100 011123344555666666666666665554332 22233344456666666
Q ss_pred HHHHHHHHHHHHHcC
Q 044044 479 VLEALELFRAIRDSK 493 (508)
Q Consensus 479 ~~~A~~~~~~m~~~g 493 (508)
-++|+.-|++.+..+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666553
No 313
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.61 E-value=1.6 Score=35.98 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=25.2
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044044 78 GQGDINLITPNEALCIFDYMLRMHPSPPP---VSSFNILFGCLAKNKHYDTVLSLFKRLNS 135 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 135 (508)
|..++..|++++|..-|..++..-|.-+. ...|..-..++.+.+.++.|+.-..+.++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie 162 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE 162 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh
Confidence 44444555555555555555544443111 11233333344444444444444444444
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.61 E-value=4.2 Score=29.39 Aligned_cols=47 Identities=6% Similarity=0.166 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 411 EALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..+-+..+....+.|++....+.+.+|.+.+++..|+++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555566666666666666666666777777666666543
No 315
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=90.57 E-value=20 Score=36.12 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=17.0
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHH
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRL 133 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 133 (508)
..-|+ .+..+.-.|.++.|.++++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 45666 566677778888888888443
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.41 E-value=3.5 Score=34.22 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCCHHHH
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK---GIKPTVVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a 447 (508)
+.|.+.|-.+...+..-++.....+...|. ..|.++++.++-+.++. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555655555554445554444444444 45566666666665543 2245666666666666666666655
No 317
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.18 E-value=10 Score=36.04 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=60.1
Q ss_pred HHHcCCCHHHHHHHHHHHHhC---CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCH---
Q 044044 367 GYCLTDKIDHARKLFVSMESN---GCMH-----DVVSYNTLINWYCKNKDVEEALSLYSEMLS-------KGIKPTV--- 428 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~---~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~--- 428 (508)
.+.-.|++.+|.+++...--. |... .-..||.+.-.+.+.|.+.-+..+|.++++ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 344467777777766543111 1111 122346666666666666666666666553 2433321
Q ss_pred --------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044044 429 --------VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK 475 (508)
Q Consensus 429 --------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 475 (508)
.+|| ..-.|...|++-.|.+.|.+.... +.-++..|..+..+|..
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 1222 334566777888888877777654 44567777777777643
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.07 E-value=0.87 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.|..+...+...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666654
No 319
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.64 E-value=1 Score=24.82 Aligned_cols=26 Identities=42% Similarity=0.517 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
|..++.+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444444444444444444
No 320
>PRK09687 putative lyase; Provisional
Probab=89.51 E-value=15 Score=32.93 Aligned_cols=232 Identities=11% Similarity=0.017 Sum_probs=140.6
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHhH
Q 044044 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDW----NEAKRLFIEMMDQGVQPDVVTF 326 (508)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~ 326 (508)
+|.......+..+...|. +++...+..+... ++...-...+.++.+.|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455566666666666665 3444444445432 3566666677777777763 4677777766443 3455555
Q ss_pred HHHHHHHHhcCCh-----hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044044 327 SVIMDELCKNGKM-----DKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLIN 401 (508)
Q Consensus 327 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (508)
...+.++...+.. ..+...+.... ..++..+-...+.++.+.++ +++...+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5556655554321 22333333333 23366666677788888887 4566666666653 45555555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044044 402 WYCKNK-DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVL 480 (508)
Q Consensus 402 ~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 480 (508)
++...+ +...+...+..+.. .++..+-...+.++.+.|+. .++..+-+..+.+ + .....+.++.+.|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 565543 24567777766664 34666677788888888884 5666665555542 2 245677888888885
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHcc
Q 044044 481 EALELFRAIRDSKYELNIVSYNCLIDG 507 (508)
Q Consensus 481 ~A~~~~~~m~~~g~~p~~~~~~~ll~~ 507 (508)
+|+..+.++.+. .||..+-..-+.+
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 788888888853 3466555444443
No 321
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.44 E-value=48 Score=38.58 Aligned_cols=321 Identities=11% Similarity=0.059 Sum_probs=149.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh
Q 044044 147 ILINCFCKMGRVSHGFVVLGRILRSCF--TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR 224 (508)
Q Consensus 147 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (508)
.+..+-.+.+.+.+|...++.-..... ......|..+...|...++++....+...... +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344455566777777777766311100 11222334444477777777766666653111 11222 23344456
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHHhcCC
Q 044044 225 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS-VIRGFCYAND 303 (508)
Q Consensus 225 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~ 303 (508)
.|++..|...|+.+...+ ++...+++-++......|.++.+....+-.... ..+....++. =+.+--+.++
T Consensus 1462 ~g~~~da~~Cye~~~q~~-------p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-------PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-------CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcc
Confidence 777888888888877764 334556666666666666666666655444332 2222223332 2233345666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHH--HHHHHhcCChh--HHHHHHHHHHHc--------CCC-CCHHhHHHHHHHHHc
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVI--MDELCKNGKMD--KASRLLELMIWR--------GVN-PNTYTYNTLIDGYCL 370 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~--~a~~~~~~~~~~--------~~~-~~~~~~~~l~~~~~~ 370 (508)
|+....... +. +..+|... .....+..+-| .-....+.+.+. +.. .-...|..++....-
T Consensus 1534 wD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l 1606 (2382)
T KOG0890|consen 1534 WDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL 1606 (2382)
T ss_pred hhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH
Confidence 666655543 11 12222222 22222221111 111122222211 111 011233333332221
Q ss_pred CCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCC-----CHhHHHHHHHHHHhcCC
Q 044044 371 TDKIDHARKLFVSMES-NGCMHDVVSYNTLINWYCKNKDVEEALSLYSE-MLSKGIKP-----TVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g~ 443 (508)
..- +.-.+.+..... .....+..-|-.-+..-....+..+-+--+++ +......| -..+|....+.....|+
T Consensus 1607 ~el-~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1607 LEL-ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHH-HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 111 111111111000 00011122232222221111122222211221 11111111 24578888888888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 444 VERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
++.|...+-+..+.+ . ...+--..+.+...|+...|+.++++..+.
T Consensus 1686 ~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999998887777764 2 334555667788899999999999988754
No 322
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.03 E-value=1.3 Score=26.48 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 469 FIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 469 li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344455555555555555555543
No 323
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.02 E-value=7 Score=32.37 Aligned_cols=90 Identities=10% Similarity=0.052 Sum_probs=67.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 044044 366 DGYCLTDKIDHARKLFVSMESNGCMHD-----VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (508)
.-+.+.|++++|..-|...++.- ++. ...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 44678899999999999888873 222 234555667788899999999998888886432 23334444567888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044044 441 IHQVERALKLFDEMRRN 457 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~~ 457 (508)
..++++|++=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88999999999999886
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.95 E-value=1.2 Score=25.88 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 464 YTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 464 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777788888888888888887776
No 325
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.82 E-value=12 Score=30.91 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=37.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 332 ELCKNGKMDKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV 409 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (508)
.+...+++++|..-++.........+ ..+--.|.+.....|.+|+|...++.....+. .......-.+.+...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCch
Confidence 44455555555555555443211101 11111223344445555555555554443321 111122234445555555
Q ss_pred HHHHHHHHHHHHC
Q 044044 410 EEALSLYSEMLSK 422 (508)
Q Consensus 410 ~~A~~~~~~~~~~ 422 (508)
++|..-|++..+.
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555544
No 326
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.60 E-value=31 Score=35.20 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
...| .+|-.|.+.|++++|.++....... .......+...+..+...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3455 4566678999999999999555443 344455667777777654
No 327
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.49 E-value=17 Score=34.70 Aligned_cols=107 Identities=18% Similarity=0.056 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH---CCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC--
Q 044044 400 INWYCKNKDVEEALSLYSEMLS---KGIKPT-----VVTYNTLFLGLFEIHQVERALKLFDEMRR-------NHVAAD-- 462 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~---~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~-- 462 (508)
-..+...|++.+|.+++-..-- .|...+ -..||.|.-.+.+.|.+..+..+|.+..+ .|+.|.
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 3456678999999998854321 121112 22346676677788888888888877763 354443
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHHccC
Q 044044 463 ---------TYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLIDGL 508 (508)
Q Consensus 463 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 508 (508)
..+||.= -.|...|++-.|.+.|.+.... +..+...|-.|.++|
T Consensus 327 ~tls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred eehhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 2355543 3577999999999999998753 567778887777665
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.26 E-value=1.5 Score=25.52 Aligned_cols=26 Identities=42% Similarity=0.477 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.11 E-value=35 Score=35.35 Aligned_cols=226 Identities=15% Similarity=0.076 Sum_probs=125.3
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCh-------hhHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCCHHhHHHHH
Q 044044 263 LCKEGFVDKAKELFLKMKDENINPDV-------VTYTSVIR-GFCYANDWNEAKRLFIEMMDQ----GVQPDVVTFSVIM 330 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 330 (508)
.....++++|..++.++...-..|+. ..++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568899999999887654222221 12333322 234578999999998887764 1233455677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHh---HHHHH--HHHHcCCCHH--HHHHHHHHHHhC---CCC---CCHHHHH
Q 044044 331 DELCKNGKMDKASRLLELMIWRGVNPNTYT---YNTLI--DGYCLTDKID--HARKLFVSMESN---GCM---HDVVSYN 397 (508)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~g~~~--~A~~~~~~~~~~---~~~---~~~~~~~ 397 (508)
.+..-.|++++|..+.....+..-.-+... |..+. ..+...|+.. +.+..+...... ..+ +-...+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999998877665422223333 33332 3455667433 333333333222 001 1223444
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHH
Q 044044 398 TLINWYCKN-KDVEEALSLYSEMLSKGIKPTVVTY--NTLFLGLFEIHQVERALKLFDEMRRNHV----AADTYTYNNFI 470 (508)
Q Consensus 398 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li 470 (508)
.+..++.+. +...++..-++-.......|-...+ ..|+......|+.++|...++++..... .++...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 455555441 2222333333333333223322222 3677888899999999999998876432 22333323333
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 044044 471 DG--LCKSGFVLEALELFRA 488 (508)
Q Consensus 471 ~~--~~~~g~~~~A~~~~~~ 488 (508)
.. ....|+.+++.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 32 3467888877776655
No 330
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.07 E-value=3.2 Score=33.69 Aligned_cols=65 Identities=12% Similarity=0.013 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhc---CChhHHHHHHH-------HHHhCCCCCC-HHhHHHHHHHHHhc
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKN---KHYDTVLSLFK-------RLNSAGLFPD-IYTHSILINCFCKM 155 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~-------~~~~~~~~~~-~~~~~~l~~~~~~~ 155 (508)
++.|++.++.....+|. +...++.-..++... .+..++.++++ +.+.. .|+ ..++..+..++...
T Consensus 7 FE~ark~aea~y~~nP~--DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL--DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH--hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHH
Confidence 56788888888888877 776666555555443 33334444444 44442 444 34555566655543
No 331
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.91 E-value=13 Score=30.12 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=8.6
Q ss_pred HHHHHHccCCHHHHHHHHHH
Q 044044 259 IIDGLCKEGFVDKAKELFLK 278 (508)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~ 278 (508)
+++.+...|++-+|.++...
T Consensus 95 iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 33444444444444444433
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.89 E-value=4.9 Score=28.73 Aligned_cols=48 Identities=6% Similarity=-0.025 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 374 IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
.-++.+-++.+...+..|++....+.+++|-+.+|+..|+++++-...
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555556666666666666666666666666666665553
No 333
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.49 E-value=12 Score=29.38 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 190 ESRIMEAAALFTKHRVFACEPDVF-TYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
.++.+++..+++.+... .|+.. .-..-.-.+...|++++|+.+|+++.+..
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 56777777777776655 33322 22223334566777777777777776654
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.35 E-value=20 Score=31.73 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 044044 215 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK 280 (508)
Q Consensus 215 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (508)
++.....|..+|.+.+|.++.+....-+ +.+...+..++..+...|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-------pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-------PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-------hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445566777788888888887777764 5667777778888888887767766666654
No 335
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.93 E-value=2.2 Score=23.33 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
|..+...+...|++++|++.|++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444455555555555544444
No 336
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.90 E-value=15 Score=32.83 Aligned_cols=100 Identities=17% Similarity=0.309 Sum_probs=71.4
Q ss_pred cCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC---CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN---INP--DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV 324 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 324 (508)
+....+...++.......+++.+...+-++.... ..+ +..+|..++. .-+.++++.++..=++.|+-||..
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchh
Confidence 4445555666666666778888888887776531 112 2233333322 336778999888888899999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRG 353 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 353 (508)
+++.+++.+.+.+++.+|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999888777654
No 337
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.73 E-value=71 Score=37.36 Aligned_cols=150 Identities=11% Similarity=0.028 Sum_probs=99.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 112 ILFGCLAKNKHYDTVLSLFKRL----NSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 187 (508)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (508)
.+..+-.+.+.+.+|+..++.- .+. .....-+..+...|...+++|...-+...... +... ..-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHH
Confidence 4445556788899999999883 221 11233344455589999999887777664111 2222 2334455
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHH-HHHHHcc
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTI-IDGLCKE 266 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~ 266 (508)
...|++..|...|+++.+.+ ++....++.++......|.+...+-..+...... .+....++.+ ..+.-+.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-------se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-------SEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-------CHHHHHHHHHHHHHHhhh
Confidence 67799999999999999874 3347778888888888899988888777766553 3344444433 3444677
Q ss_pred CCHHHHHHHHH
Q 044044 267 GFVDKAKELFL 277 (508)
Q Consensus 267 g~~~~a~~~~~ 277 (508)
++++.......
T Consensus 1532 ~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1532 SQWDLLESYLS 1542 (2382)
T ss_pred cchhhhhhhhh
Confidence 78887776665
No 338
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.67 E-value=40 Score=34.49 Aligned_cols=314 Identities=11% Similarity=0.014 Sum_probs=149.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHH
Q 044044 117 LAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSC-FTPNAVTFTSLIKGLCAESRIME 195 (508)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 195 (508)
..+.|++..+.++...+....+ ..-..|..+...+. ....+ ++-.-+.+.. .+.....-...+..+.+.+++.+
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 4567888888877777653211 11122222222111 11233 2222222221 12222333344455666777776
Q ss_pred HHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHH--HH
Q 044044 196 AAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDK--AK 273 (508)
Q Consensus 196 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~ 273 (508)
.+..+.. .+.+...-.....+....|+.++|....+.+-..+ ......++.++..+.+.|.... ..
T Consensus 118 ~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-------~~~p~~cd~l~~~~~~~g~lt~~d~w 185 (644)
T PRK11619 118 LLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-------KSLPNACDKLFSVWQQSGKQDPLAYL 185 (644)
T ss_pred HHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCChHHHHHHHHHHHcCCCCHHHHH
Confidence 6663321 13455555667778888898888887777776655 3345677778888776665433 23
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCCHHhHHHHHHHHH--hcCChhHH
Q 044044 274 ELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---------GVQPDVVTFSVIMDELC--KNGKMDKA 342 (508)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~--~~~~~~~a 342 (508)
+=++.+...| +...-..+.... . .+.....+.+..+... .++++...-..++-++. ...+.+.|
T Consensus 186 ~R~~~al~~~---~~~lA~~l~~~l-~-~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A 260 (644)
T PRK11619 186 ERIRLAMKAG---NTGLVTYLAKQL-P-ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENA 260 (644)
T ss_pred HHHHHHHHCC---CHHHHHHHHHhc-C-hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHH
Confidence 3333333332 333333333322 1 1111111122222111 11122211111111222 23455667
Q ss_pred HHHHHHHHHcC-CCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 343 SRLLELMIWRG-VNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 343 ~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
..++....... ..+. ..++..+.......+..++|...++...... .+......-+......++++.+...+..|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L 338 (644)
T PRK11619 261 RLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARL 338 (644)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhc
Confidence 77776654332 2211 1223333333333322455555555543321 23334444455555777777777777776
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 420 LSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
.... .-...-...+..++...|+.++|...|+++.
T Consensus 339 ~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 339 PMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5432 2233444566667666777777777777764
No 339
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.49 E-value=7.7 Score=31.62 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 410 EEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
++|...|++..+ ..|+..+|..-+... .+|-++..++.+.+
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 334444444444 355666666555443 24555555555443
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.41 E-value=41 Score=34.30 Aligned_cols=98 Identities=10% Similarity=0.018 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
+.+++|++.-+.....-+.......+...+..+...|++++|-...-.|.. -+..-|..-+..+...++......
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~~Ia~- 444 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLTDIAP- 444 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccchhhc-
Confidence 457788777665544333222345778888889999999999999988874 356667777777776666543222
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 165 LGRILRSCFTPNAVTFTSLIKGLCA 189 (508)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (508)
-+.......+..+|..++..+..
T Consensus 445 --~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 445 --YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred --cCCCCCcccCchHHHHHHHHHHH
Confidence 22222222455567666666555
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.82 E-value=11 Score=27.29 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 195 EAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 195 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|+++|+.++.+-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 555666666666777888888888888888888888888888877763
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.05 E-value=3 Score=22.81 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555544
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.53 E-value=8.6 Score=32.38 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG--CMHDVVSYNTLIN 401 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~ 401 (508)
.+..++.+.+.+...+++....+-++.. +.|...-..+++.++-.|++++|..-++..-+.. ..+-...|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445556667777777777776666553 2245556666677777777777766666554431 1223344554444
No 344
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=84.53 E-value=31 Score=31.20 Aligned_cols=85 Identities=13% Similarity=-0.004 Sum_probs=42.7
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----c
Q 044044 265 KEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK----N 336 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 336 (508)
..+++..+...+......+ +......+...|.. ..+..+|.++|+...+.|. ......+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 4556677777776666543 22233333333332 2345666666665555542 2222333333333 2
Q ss_pred CChhHHHHHHHHHHHcCCC
Q 044044 337 GKMDKASRLLELMIWRGVN 355 (508)
Q Consensus 337 ~~~~~a~~~~~~~~~~~~~ 355 (508)
.+..+|...++.+.+.|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cCHHHHHHHHHHHHHcCCh
Confidence 3556666666666666543
No 345
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.49 E-value=6.7 Score=32.98 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=47.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCC--CCCCHHhHHHHHHH
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSC--FTPNAVTFTSLIKG 186 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 186 (508)
+.+..+..+.+.+.+++|+.+.+.-++.. +-|...-..+++.+|-.|++++|..-++..-+.. ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455666677777777777777766653 4455566667777777777777776665554431 22334556665554
No 346
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.25 E-value=53 Score=33.69 Aligned_cols=256 Identities=11% Similarity=0.016 Sum_probs=142.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc
Q 044044 146 SILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT 225 (508)
Q Consensus 146 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (508)
..-+..+.+.+++......+. ..+.+......+..+....|+.++|......+=..| .........++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Confidence 334445556666665554221 124455566667788888899888877777665444 34567788888888877
Q ss_pred CChHHH--HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC---------CCCCChhhHHHH
Q 044044 226 GHTIVA--LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE---------NINPDVVTYTSV 294 (508)
Q Consensus 226 g~~~~A--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~l 294 (508)
|..... .+-++.+...+ +...-..+..... .+.....+.+..+.+. .+.++...-..+
T Consensus 177 g~lt~~d~w~R~~~al~~~---------~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~ 245 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAG---------NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMA 245 (644)
T ss_pred CCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHH
Confidence 765443 33333333332 3333333443331 1112112222222211 122232222222
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHHcC-CCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 044044 295 IRGFC--YANDWNEAKRLFIEMMDQG-VQPDV--VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC 369 (508)
Q Consensus 295 ~~~~~--~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (508)
+.++. ...+.+.|..++....... ..+.. .....+.......+..+++...++...... .+......-+..-.
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al 323 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHH
Confidence 23332 3456788999998875543 22222 233444333344333667777777654332 24444555566666
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 370 LTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
..++++.+...+..|.... .-...-.--+.+++...|+.++|...|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8999999999999886543 22333344467777779999999999999844
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.20 E-value=17 Score=32.06 Aligned_cols=87 Identities=8% Similarity=0.036 Sum_probs=37.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----
Q 044044 260 IDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK---- 335 (508)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 335 (508)
|.+++..++|.++..+.-+..+.--+..+.....-|-.|.+.+++..+.++-...+...-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555554444332211112223333333445555555555555544443212222234444443332
Q ss_pred -cCChhHHHHHH
Q 044044 336 -NGKMDKASRLL 346 (508)
Q Consensus 336 -~~~~~~a~~~~ 346 (508)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45555555444
No 348
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.20 E-value=3.5 Score=22.56 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 465 TYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 465 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677778888888888888887765
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.20 E-value=46 Score=32.20 Aligned_cols=164 Identities=14% Similarity=0.114 Sum_probs=86.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 287 DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLID 366 (508)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (508)
|.....+++..+.++..+.-++.+..+|...| .+...|..++.+|... ..+.-..+++++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455566666666666666666666666653 3455566666666665 445566666666655433 3444444444
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHh
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMH-----DVVSYNTLINWYCKNKDVEEALSLYSEMLSK-GIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 440 (508)
.|-+ ++...+...|.++...-++. -...|..+... -..+.+..+.+..++... |..--...+.-+..-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4443 66666666666655432110 01133333321 123455555555555543 333334444455555666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044044 441 IHQVERALKLFDEMRRN 457 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~~ 457 (508)
..++.+|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66677777776666554
No 350
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.17 E-value=38 Score=31.21 Aligned_cols=77 Identities=8% Similarity=0.021 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 044044 342 ASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK---NKDVEEALSLYSE 418 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 418 (508)
-+.+++++++.+. .+.......+..+.+..+.++..+.|+++.... +-+...|...+..... .-.++....+|.+
T Consensus 50 klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 50 KLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3445555555422 234445555555555555555555555555542 2344555555444332 1234444444444
Q ss_pred HH
Q 044044 419 ML 420 (508)
Q Consensus 419 ~~ 420 (508)
.+
T Consensus 128 ~l 129 (321)
T PF08424_consen 128 CL 129 (321)
T ss_pred HH
Confidence 33
No 351
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.92 E-value=9.4 Score=34.46 Aligned_cols=51 Identities=8% Similarity=-0.083 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044044 187 LCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEM 238 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 238 (508)
|.++|.+++|+..|.+..... +.+.+++..-..+|.+...+..|..=....
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 444455555555544433321 114444444444444444444444433333
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.91 E-value=47 Score=32.13 Aligned_cols=178 Identities=14% Similarity=0.102 Sum_probs=97.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH
Q 044044 174 TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT 253 (508)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (508)
..|.....+++..+.......-...+..+|...| -+...|..++.+|... ..+.-..+++++.+.+ -.|+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-------fnDv 132 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-------FNDV 132 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-------chhH
Confidence 3455566667777777766766777777777664 3556677777777766 5566677777766653 2233
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHH
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDENINP-----DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-GVQPDVVTFS 327 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ 327 (508)
+.-..|...|-+ ++.+.+..+|.++...-++. -...|..+... -..+.+....+...+... |...-.+.+.
T Consensus 133 v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 133 VIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 333444444444 66677777777665442110 11233333331 134455555555555442 3233334444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 044044 328 VIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLI 365 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (508)
-+-.-|....++++|++++..+.+.+- -|...-..++
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i 246 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDE-KDVWARKEII 246 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHH
Confidence 455556666666677776666665532 2443333343
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.58 E-value=2.2 Score=21.89 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 044044 468 NFIDGLCKSGFVLEALELFR 487 (508)
Q Consensus 468 ~li~~~~~~g~~~~A~~~~~ 487 (508)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
No 354
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.56 E-value=3 Score=22.53 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 468 NFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 468 ~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+..++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555666666666666666654
No 355
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.19 E-value=0.63 Score=36.82 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=58.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCC
Q 044044 148 LINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGH 227 (508)
Q Consensus 148 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 227 (508)
++..+.+.+..+.....++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666677888888888888887766677888899999999988777777777621 11333456666667777
Q ss_pred hHHHHHHHHHHH
Q 044044 228 TIVALNLFEEMA 239 (508)
Q Consensus 228 ~~~A~~~~~~~~ 239 (508)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777776666543
No 356
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.14 E-value=17 Score=26.34 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=26.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 437 GLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
.+...|++++|..+.+.+ ..||...|-+|- -.+.|..+++..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 344555566655555443 245555554442 235555555555555555544
No 357
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.98 E-value=25 Score=31.00 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--
Q 044044 292 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC-- 369 (508)
Q Consensus 292 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 369 (508)
..-|++++..++|.++....-+.-+.--+........-|-.|.+.+++..+.++-..-....-+-+...|..++..|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 344678888888888877765554432122233444455568888888888888777665433334445776665554
Q ss_pred ---cCCCHHHHHHHH
Q 044044 370 ---LTDKIDHARKLF 381 (508)
Q Consensus 370 ---~~g~~~~A~~~~ 381 (508)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 468888888877
No 358
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.56 E-value=2 Score=23.26 Aligned_cols=25 Identities=32% Similarity=0.487 Sum_probs=15.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 044044 112 ILFGCLAKNKHYDTVLSLFKRLNSA 136 (508)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (508)
.+..++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455556666666666666666553
No 359
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.14 E-value=51 Score=30.67 Aligned_cols=64 Identities=11% Similarity=-0.013 Sum_probs=31.7
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH---DVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
..+|..++..+.+.|.++.|...+..+...+... .+...-.-+...-..|+..+|+..+++..+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555566666666666666665555432111 122222233444455555666665555554
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.01 E-value=4.5 Score=24.17 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 044044 399 LINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444555555555555554443
No 361
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.65 E-value=26 Score=29.96 Aligned_cols=89 Identities=24% Similarity=0.181 Sum_probs=44.7
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCCC--HhHHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCC----C-HHHH
Q 044044 405 KNKDVEEALSLYSEMLS----KGIKPT--VVTYNTLFLGLFEIHQVE-------RALKLFDEMRRNHVAA----D-TYTY 466 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~~~~----~-~~~~ 466 (508)
....+++|++.|.-++- .+.++. ...+..+.+.|...|+.+ .|.+.|.+..+..-.| + ....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34455555555544332 122333 234445556666666633 3444444444332111 1 2223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
-.+.....+.|++++|.+.|.++...+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344555677788888888888877543
No 362
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=79.00 E-value=49 Score=29.86 Aligned_cols=115 Identities=16% Similarity=0.081 Sum_probs=50.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----C-
Q 044044 338 KMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL----TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKN-----K- 407 (508)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g- 407 (508)
+..+|..++..+.+.|. ......|..+|.. ..+..+|...++++.+.|..+.......+...|..- -
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 34555555555544442 2222223333333 225556666666665555222212233333333322 0
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 044044 408 -DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERALKLFDEMRRNH 458 (508)
Q Consensus 408 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 458 (508)
+...|...+.++...+ +......+...|.. ..+.++|..+|.+..+.|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 2225566665555554 23333333333322 235566666666665554
No 363
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=78.12 E-value=8.6 Score=23.49 Aligned_cols=34 Identities=9% Similarity=0.245 Sum_probs=22.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHHc
Q 044044 473 LCKSGFVLEALELFRAIRDSKYELNIVSYNCLID 506 (508)
Q Consensus 473 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 506 (508)
..+.|-.+++..++++|.+.|+.-+...|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777777666666554
No 364
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.53 E-value=46 Score=28.71 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=81.0
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHh-HHHHHHHHHh
Q 044044 76 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYT-HSILINCFCK 154 (508)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 154 (508)
..|.-++....+..|+..+.+++...|. ....|..-+.++.+..+++.+..=-.+.++. .|+..- ...+...+..
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~--~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPT--VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCC--cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHh
Confidence 4555666667889999999999888877 5567778888888899999888877777764 555443 3444566677
Q ss_pred cCCcchHHHHHHHHHh----CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 044044 155 MGRVSHGFVVLGRILR----SCFTPNAVTFTSLIKGLCAESRIMEAAALFT 201 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (508)
...++.|+..+.+... ..+.+-......|..+--+.=...+..++.+
T Consensus 91 s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred hccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 7888999988887743 2333444455555554333333334444433
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.53 E-value=18 Score=27.44 Aligned_cols=47 Identities=6% Similarity=0.213 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 411 EALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..+-+..+....+.|++.....-+.+|.+.+|+..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44445555555667777777777777777777777777777777654
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.47 E-value=51 Score=29.21 Aligned_cols=200 Identities=14% Similarity=0.156 Sum_probs=112.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH-------hHHHHHHHHHHccCCHHHHHHHHHHH----hhCCCC
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT-------VTYNTIIDGLCKEGFVDKAKELFLKM----KDENIN 285 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~ 285 (508)
.+.+-..+.+++++|+..+.++...| ...+. .+...+...|...|++....+..... .+..-+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg------~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~ 81 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKG------VSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP 81 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCC------CChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch
Confidence 34555667888999999999998876 33333 34556788889999877666555432 222112
Q ss_pred CChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHH-----hHHHHHHHHHhcCChhHHHHHHHHH----HHcCCC
Q 044044 286 PDVVTYTSVIRGFCYA-NDWNEAKRLFIEMMDQGVQPDVV-----TFSVIMDELCKNGKMDKASRLLELM----IWRGVN 355 (508)
Q Consensus 286 ~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~ 355 (508)
..+....+++..+-.. ..++..+.+.....++....+.. .-.-++..+.+.|.+.+|+.+...+ .+-+-.
T Consensus 82 k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK 161 (421)
T COG5159 82 KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK 161 (421)
T ss_pred hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc
Confidence 2344556666665443 45666777776666543222221 2234667888999999998866544 444444
Q ss_pred CCHHhHHHHH-HHHHcCCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHC
Q 044044 356 PNTYTYNTLI-DGYCLTDKIDHARKLFVSMES----NGCMHDVVSYNTLINW--YCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 356 ~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 422 (508)
++..+...+= .+|....+..++..-+-.... .-+||-...---++++ .|...++..|..+|-+..+.
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 4433322221 345555555554444433221 1234433333333333 24555677777777666653
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.49 E-value=9.5 Score=26.16 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=26.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 044044 440 EIHQVERALKLFDEMRRNHVAAD--TYTYNNFIDGLCKSGFVLEALEL 485 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~ 485 (508)
...+.++|+..|+...+.-..+. ..++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777766665422211 22455666677777777666654
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.08 E-value=39 Score=26.64 Aligned_cols=93 Identities=13% Similarity=0.227 Sum_probs=62.0
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 044044 384 MESNGCMHDVV--SYNTLINWYCKNKDVEEALSLYSEMLSKGI-----KPTVVTYNTLFLGLFEIHQ-VERALKLFDEMR 455 (508)
Q Consensus 384 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 455 (508)
|.+.+..++.. ..|.++......+++...+.+++.+..... ..+...|..++.+.....- .--+..+|.-|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 34344444443 356777777777888888888887743210 2245567888888765555 445677778887
Q ss_pred HCCCCCCHHHHHHHHHHHHhc
Q 044044 456 RNHVAADTYTYNNFIDGLCKS 476 (508)
Q Consensus 456 ~~~~~~~~~~~~~li~~~~~~ 476 (508)
+.+.+++..-|..++.++.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 777888888888888877654
No 369
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.04 E-value=1.8 Score=38.88 Aligned_cols=89 Identities=11% Similarity=0.004 Sum_probs=43.3
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCcch
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 160 (508)
++.|.++.|++.|...+...|. ....|..-..++.+.++...|+.=+....+. .|| ...|..--.+....|++++
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~--~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPP--LAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccccCCc--hhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 3445555555555555555443 4444444555555555555555555555543 222 1223333333334455555
Q ss_pred HHHHHHHHHhCCCC
Q 044044 161 GFVVLGRILRSCFT 174 (508)
Q Consensus 161 a~~~~~~~~~~~~~ 174 (508)
|...+....+.++.
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 55555555554443
No 370
>PRK09687 putative lyase; Provisional
Probab=74.89 E-value=64 Score=29.03 Aligned_cols=17 Identities=24% Similarity=0.132 Sum_probs=7.8
Q ss_pred CHHhHHHHHHHHHcCCC
Q 044044 357 NTYTYNTLIDGYCLTDK 373 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~ 373 (508)
+..+-...+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 34444444444444444
No 371
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.87 E-value=54 Score=28.21 Aligned_cols=62 Identities=8% Similarity=0.043 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCh
Q 044044 226 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDV 288 (508)
Q Consensus 226 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 288 (508)
.++++|+..|+..-+-....- ....-...+..+.......+++.+|.++|+++....+..+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ee-s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEE-SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 455666666665544221000 00111123333445556678899999999988776444333
No 372
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.76 E-value=76 Score=29.82 Aligned_cols=130 Identities=13% Similarity=-0.003 Sum_probs=80.8
Q ss_pred HcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHH
Q 044044 99 RMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAV 178 (508)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 178 (508)
+.+|. .+.++-.+...+.++|+.+.|.++++++.-.- ..++......+........+. +.-...-|..
T Consensus 34 ~~~Py--HidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~r------L~~~~~eNR~ 101 (360)
T PF04910_consen 34 QKNPY--HIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNCR------LDYRRPENRQ 101 (360)
T ss_pred HHCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCccc------cCCccccchH
Confidence 55676 78888888888999999999999988875210 011111111100000000000 0011123555
Q ss_pred hHHHH---HHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 044044 179 TFTSL---IKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC-RTGHTIVALNLFEEMAN 240 (508)
Q Consensus 179 ~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 240 (508)
.|.++ +..+.+.|-+..|+++.+-+...+..-|+.....+|+.|+ +.++++--+++++....
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 55544 4567788999999999999988875557777777777765 67788888888887655
No 373
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.65 E-value=28 Score=24.81 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=39.2
Q ss_pred HHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCC
Q 044044 91 LCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFP-DIYTHSILINCFCKMGR 157 (508)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 157 (508)
+.-++..+..+|. |...--.+...+...|++++|++.+-.+.+..... +...-..++..+...|.
T Consensus 8 ~~al~~~~a~~P~--D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPD--DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3445556666776 77777888888888888888888888887664222 23334444444444443
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.39 E-value=60 Score=28.50 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=110.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC---CC--CCChhhHHHHHHHHH
Q 044044 225 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE---NI--NPDVVTYTSVIRGFC 299 (508)
Q Consensus 225 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~ 299 (508)
..++++|+.-|++..+..++-|. -.-.....++..+.+.|++++..+.|.++..- .+ .-+..+.|.++....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKge---WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGE---WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccch---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 44677888888887775532210 11234455778888899999888888877531 11 223455666666555
Q ss_pred hcCCHHHHHHHHHHHHHc----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----C-------CCHHhHHH
Q 044044 300 YANDWNEAKRLFIEMMDQ----G-VQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGV----N-------PNTYTYNT 363 (508)
Q Consensus 300 ~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-------~~~~~~~~ 363 (508)
...+.+-..+.|+.-++. . -..--.|-.-+...|...+++.+..++++++...-- . .-..+|..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 555554444444332211 0 000111334566777788888888888877754311 0 12346777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHH
Q 044044 364 LIDGYCLTDKIDHARKLFVSMESN-GCMHDVVSYNTLIN-----WYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~ 420 (508)
-|++|....+-.+-..++++.... ...|.+.... +|+ +..+.|++++|-.-|-++.
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 788888888877777788766442 1234443332 333 3456788888765444443
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.19 E-value=13 Score=25.48 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=28.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHH
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLF 451 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 451 (508)
...+.++|+..|...+++-..+. -.++..|+.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777776533222 124556667777777777766553
No 376
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.60 E-value=1.4e+02 Score=31.78 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
-|..|+..|...|+.++|++++.+.....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 37788888888999999999988887743
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.01 E-value=72 Score=28.35 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
-++..+.+.|.+.+|+.+...+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 45677778888888877655443
No 378
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.16 E-value=9 Score=20.36 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFG 115 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (508)
|+++.|..+|+.++...|. +...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~--~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK--SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC--ChHHHHHHHH
Confidence 3556677777777766654 5555655443
No 379
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=70.65 E-value=1e+02 Score=29.45 Aligned_cols=369 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 111 NILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190 (508)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (508)
|-.+.-|...|+..+|-+..+++ ..+.+.....-+++...+.-..|..+.-...+.+...+...-..+.+++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L-----~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIREL-----GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhh
Q ss_pred CC--------HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHH
Q 044044 191 SR--------IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDG 262 (508)
Q Consensus 191 g~--------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (508)
+. ...|...|+.+.-..+.-+-..-+.+-..-...|+.+. ++.|++ ....+|+-
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------------~~~~IIqE 354 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------------DLTPIIQE 354 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-----------------hhHHHHHH
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHHhcC-Ch
Q 044044 263 LCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV--TFSVIMDELCKNG-KM 339 (508)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~-~~ 339 (508)
|...|+..+..+.++++-.....|-...+..-+..=.++..-+.|-.++..+.-.-+.+..+ .|..++...-... +.
T Consensus 355 YFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~ 434 (645)
T KOG0403|consen 355 YFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDI 434 (645)
T ss_pred HHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccc
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh---------------------CCCCCCHHHHHH
Q 044044 340 DKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMES---------------------NGCMHDVVSYNT 398 (508)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------------~~~~~~~~~~~~ 398 (508)
..|-+.+...+.+-+--++-.-..+=....+......+.+.++.+.. ..+..-..-...
T Consensus 435 p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~ 514 (645)
T KOG0403|consen 435 PRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDM 514 (645)
T ss_pred cccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044044 399 LINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGF 478 (508)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 478 (508)
|+.-|.-.|+..+|.+..+++----+. ....+-+++.+..+.|+-...+.+++...+. ...|-+.+-++|.+-.+
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERVYD 589 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhhhc
Q ss_pred --------HHHHHHHHHHHHHcCCccCHHHHHHHHccC
Q 044044 479 --------VLEALELFRAIRDSKYELNIVSYNCLIDGL 508 (508)
Q Consensus 479 --------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 508 (508)
...|.+.|+...+.+ .-+..+|..|-.-|
T Consensus 590 sl~DlsLDvPna~ekf~~~Ve~~-~~~G~i~~~l~~~~ 626 (645)
T KOG0403|consen 590 SLPDLSLDVPNAYEKFERYVEEC-FQNGIISKQLRDLC 626 (645)
T ss_pred cCcccccCCCcHHHHHHHHHHHH-HHcCchhHHhhhcc
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.40 E-value=25 Score=29.49 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=17.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 425 KPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.|+..+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555554
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.30 E-value=30 Score=34.00 Aligned_cols=87 Identities=11% Similarity=0.018 Sum_probs=40.0
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
.|++-+|+..+.......+....-...-.+...+-+.|...+|--++..+.... ..=...+-.+.++++..+++.....
T Consensus 226 ~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA-~~~t~n~y~l~~i~aml~~~N~S~~ 304 (886)
T KOG4507|consen 226 KGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA-DFFTSNYYTLGNIYAMLGEYNHSVL 304 (886)
T ss_pred cCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC-ccccccceeHHHHHHHHhhhhhhhh
Confidence 455566666555554443331122233445555556666665555554443321 0000113334455555555555555
Q ss_pred HHHHHHhC
Q 044044 164 VLGRILRS 171 (508)
Q Consensus 164 ~~~~~~~~ 171 (508)
.|+...+.
T Consensus 305 ~ydha~k~ 312 (886)
T KOG4507|consen 305 CYDHALQA 312 (886)
T ss_pred hhhhhhcc
Confidence 55555443
No 382
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.94 E-value=9.1 Score=36.33 Aligned_cols=104 Identities=12% Similarity=0.037 Sum_probs=74.7
Q ss_pred CCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 044044 80 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (508)
..+..+.++.|..++.++++.+|. ....|..-..++.+.+++..|+.=+.++++.. +--...|..-..++.+.+++.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpn--ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPN--CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCc--ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 445567899999999999999987 77777777788889999999988888887753 222334444445666667777
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGLC 188 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (508)
+|+..|+..... .|+..-....+.-|-
T Consensus 90 ~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 90 KALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 888888777654 667666666665443
No 383
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.30 E-value=40 Score=25.68 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 376 HARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
+..+-++.+...++.|++.....-+++|-+.+|+..|.++|+-...+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555555566666666666666666666666666666665544
No 384
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.30 E-value=39 Score=33.27 Aligned_cols=87 Identities=16% Similarity=0.071 Sum_probs=48.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 044044 119 KNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAA 198 (508)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (508)
..|+...|...+..+..............|.+.+.+.|....|..++.+.+... ...+-++..+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 456666666666655432211122334445555556666666666666555443 2334455556666666666667776
Q ss_pred HHHHhhhc
Q 044044 199 LFTKHRVF 206 (508)
Q Consensus 199 ~~~~~~~~ 206 (508)
.|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 66665554
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.01 E-value=1.6e+02 Score=31.24 Aligned_cols=116 Identities=10% Similarity=0.010 Sum_probs=69.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHhcCCc--chHHHHHHHHHhCCCCCCHHhHH--
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGL---FPDIYTHSILINCFCKMGRV--SHGFVVLGRILRSCFTPNAVTFT-- 181 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~-- 181 (508)
-|..|+..|...|+.++|++++.+.....- .--...+..+++-+.+.+.. +-.++.-....+.........+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 488899999999999999999999876320 11122233355555555544 44444444444432111111111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh
Q 044044 182 ----------SLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR 224 (508)
Q Consensus 182 ----------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (508)
..+-.|......+-++.+++.+....-..+....+.++..|..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223455667777888888888776655566677777777764
No 386
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.75 E-value=3.7 Score=31.38 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=17.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCccCHHHHHHHHc
Q 044044 475 KSGFVLEALELFRAIRDSKYELNIVSYNCLID 506 (508)
Q Consensus 475 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 506 (508)
..|.-.+|..+|++|++.|-.||. |+.|+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 345555666666666666666653 444443
No 387
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.67 E-value=42 Score=24.37 Aligned_cols=15 Identities=33% Similarity=0.273 Sum_probs=6.9
Q ss_pred HHhcCChHHHHHHHH
Q 044044 222 LCRTGHTIVALNLFE 236 (508)
Q Consensus 222 ~~~~g~~~~A~~~~~ 236 (508)
+...|+|++|..+.+
T Consensus 49 LmNrG~Yq~Al~l~~ 63 (115)
T TIGR02508 49 LMNRGDYQSALQLGN 63 (115)
T ss_pred HHccchHHHHHHhcC
Confidence 344445555444433
No 388
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.63 E-value=14 Score=32.92 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHH
Q 044044 466 YNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYN 502 (508)
Q Consensus 466 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 502 (508)
|+..|..-.+.|++++|++++++..+.|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3455555555555555555555555555544444443
No 389
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.27 E-value=10 Score=19.49 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
.+...+...|++++|...+++.+
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444444444433
No 390
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.03 E-value=15 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
.+|.++...|++++|.++.+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555554443
No 391
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.60 E-value=93 Score=27.86 Aligned_cols=116 Identities=9% Similarity=0.045 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHhhh-cCCCCCHhhHHHHHHHHHh-cC-ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 191 SRIMEAAALFTKHRV-FACEPDVFTYNTLINGLCR-TG-HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 191 g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
..+.+|+++|+.... ..+-.|..+...+++.... .+ ....--++.+-+....+ ..++..+...++..+++.+
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~-----~~l~~~vi~~Il~~L~~~~ 216 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFS-----KSLTRNVIISILEILAESR 216 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccc-----cCCChhHHHHHHHHHHhcc
Confidence 344566666663211 1123355555555555544 11 11222222222222211 2345555566666777777
Q ss_pred CHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 044044 268 FVDKAKELFLKMKDE-NINPDVVTYTSVIRGFCYANDWNEAKRLF 311 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 311 (508)
+|..-.++++..... +...|...|..+|......|+..-...+.
T Consensus 217 dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 217 DWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 777777766665544 44446666777777777777665554444
No 392
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.34 E-value=1e+02 Score=28.23 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=40.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHh
Q 044044 363 TLIDGYCLTDKIDHARKLFVSMESN---GCMHDVVSY--NTLINWYCKNKDVEEALSLYSEMLS-----KGIKPTVV 429 (508)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~ 429 (508)
.++....+.++.++|.+.++++.+. .-.|+.+.| ..++.++...||..++.+++.+... .++.|++.
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3344455566777888777777553 113455544 3445566677777777777776665 35555444
No 393
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.72 E-value=94 Score=27.60 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=18.9
Q ss_pred cCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKAKELFL 277 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 277 (508)
.-+......+...+.+.|++.+|+..|-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3466777788888888888888776663
No 394
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.22 E-value=1.2e+02 Score=30.60 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=6.3
Q ss_pred cCChhHHHHHHHHH
Q 044044 120 NKHYDTVLSLFKRL 133 (508)
Q Consensus 120 ~g~~~~A~~~~~~~ 133 (508)
.|++..+++....+
T Consensus 310 ~~d~~~vL~~~~~~ 323 (566)
T PF07575_consen 310 EGDIESVLKEISSL 323 (566)
T ss_dssp TS--GGGHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 45555555555443
No 395
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=65.86 E-value=1.9e+02 Score=30.77 Aligned_cols=175 Identities=13% Similarity=0.054 Sum_probs=90.0
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhH-------HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDT-------VLSLFKRLNSAGLFPDIYTHSILINCFCKMGRV 158 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (508)
.-+.|.++|+.+...+|. .-+.....+-....+....++ -+++-+..++ .-|...+...+. ++....
T Consensus 1090 ~~e~~~k~~~~l~s~ypd-~lpll~~~l~kl~~~sD~~kE~~~ki~eIl~~A~~Vi~---~~D~eaL~~y~~--~k~D~r 1163 (1304)
T KOG1114|consen 1090 ADEEAEKIYNYLKSSYPD-YLPLLEVRLAKLMQKSDAVKETNKKIEEILSAADSVIQ---EIDTEALARYYA--LKEDTR 1163 (1304)
T ss_pred hHHHHHHHHHHHHHhCcc-cchHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH---hhcHHHHHHHHh--cccCCc
Confidence 456799999999999885 222233333333222222222 2222222222 123333222111 134444
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------------------HHHHHHHHHHhhhcCCCCCHhhHH
Q 044044 159 SHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR----------------------IMEAAALFTKHRVFACEPDVFTYN 216 (508)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~A~~~~~~~~~~~~~~~~~~~~ 216 (508)
.+|..+-.+|... -++++.++++.|. .+.-.+.|.++...--..|..++.
T Consensus 1164 ~da~klk~~me~q--------k~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~ 1235 (1304)
T KOG1114|consen 1164 PDAVKLKKKMEKQ--------KDTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQ 1235 (1304)
T ss_pred chHHHHHHHHHHH--------HHHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchhee
Confidence 5577777776543 2345555554432 222233444444332233555666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK 280 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (508)
.-...+...|++..|++++.++.+..+ -.++...|..++..+...|- .....+++.+.
T Consensus 1236 ~a~~ha~~~~~yGr~lK~l~kliee~~-----es~t~~~~~~~~el~~~Lgw-~H~~t~~~~~~ 1293 (1304)
T KOG1114|consen 1236 IAKKHAKALGQYGRALKALLKLIEENG-----ESATKDVAVLLAELLENLGW-NHLATFVKNWM 1293 (1304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHhCc-hHhHHHHhhhe
Confidence 666667778899999999888887544 34566666666666655553 33344444443
No 396
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.58 E-value=2.1e+02 Score=31.23 Aligned_cols=180 Identities=13% Similarity=0.007 Sum_probs=100.8
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHhHHHHHHH
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-----IYTHSILINC 151 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~ 151 (508)
.|..++..|.+.+|+..|.++...-.. ++.|-..-...+- .+.-...|-.|+ ..-|..+++.
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge------~~aL~~lv~~~~p-------~~~sv~dG~t~s~e~t~lhYYlkv~rl 992 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGE------GNALRKLVYFLLP-------KRFSVADGKTPSEELTALHYYLKVVRL 992 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhcccc------HHHHHHHHHHhcC-------CCCchhcCCCCCchHHHHHHHHHHHHH
Confidence 456688888899999988887653332 2222111111110 000112232222 2346677788
Q ss_pred HHhcCCcchHHHHHHHHHhCCCC--CC-HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCCh
Q 044044 152 FCKMGRVSHGFVVLGRILRSCFT--PN-AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228 (508)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 228 (508)
+-+.+-.+.+.++-..+++.-.. |+ ..+++.+.+.....|.+-+|.+.+-+.... ..-......++..++.+|++
T Consensus 993 le~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 993 LEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccch
Confidence 88888888888887776654111 12 335677777777888888887766542221 11223456677777777765
Q ss_pred H------------HHHH-HHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 044044 229 I------------VALN-LFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFL 277 (508)
Q Consensus 229 ~------------~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 277 (508)
+ +..+ +++...... .......|+.|-..+...+++.+|-.+.-
T Consensus 1071 ~~L~~fpfigl~~eve~~l~esaaRs~------~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1071 EALATFPFIGLEQEVEDFLRESAARSS------PSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHhhCCccchHHHHHHHHHHHHhhcC------ccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 4 4444 333332222 22234456766677778888888766543
No 397
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.56 E-value=91 Score=27.04 Aligned_cols=118 Identities=14% Similarity=0.022 Sum_probs=65.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHH
Q 044044 333 LCKNGKMDKASRLLELMIWRGVNPNTY-TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVV-SYNTLINWYCKNKDVE 410 (508)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 410 (508)
|....+++.|..-|.+.+.. .|+.. -|..-+..+.+..+++.+..--.+..+. .||.+ ..-.+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 55556677777777666644 55543 3444455666777777777666666654 34433 3344555666777788
Q ss_pred HHHHHHHHHHHC----CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 411 EALSLYSEMLSK----GIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 411 ~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
+|+..+.+.... .+.+.......|..+-...=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888877776432 23333344444444433333334444444433
No 398
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.71 E-value=1.1e+02 Score=29.39 Aligned_cols=209 Identities=14% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHHhcCChhHHHHHHHH
Q 044044 273 KELFLKMKDENINPDVVT--YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV--TFSVIMDELCKNGKMDKASRLLEL 348 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 348 (508)
.++++.+.+.|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Q ss_pred HHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044044 349 MIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN--TLINWYCKNKDVEEALSLYSEMLSKGIKP 426 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 426 (508)
-.......+..-.+.+..+..... .++++.+.+.|..++..... +.+...+..|+.+-+..+++.-......
T Consensus 91 ~~~~~~~~~~~g~tpL~~A~~~~~-----~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~- 164 (413)
T PHA02875 91 GKFADDVFYKDGMTPLHLATILKK-----LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE- 164 (413)
T ss_pred CCcccccccCCCCCHHHHHHHhCC-----HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC-
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHH
Q 044044 427 TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYN---NFIDGLCKSGFVLEALELFRAIRDSKYELNIVS 500 (508)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 500 (508)
+..-.+.|..+..... .++.+.+.+.|..++...-. .++......|+. ++.+-+.+.|..++...
T Consensus 165 d~~g~TpL~~A~~~g~-----~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~~~ 232 (413)
T PHA02875 165 DCCGCTPLIIAMAKGD-----IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNIMF 232 (413)
T ss_pred CCCCCCHHHHHHHcCC-----HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcchHh
No 399
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=64.49 E-value=94 Score=26.85 Aligned_cols=138 Identities=12% Similarity=0.190 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK 405 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (508)
...-+..|...-++.-|-...+++++ | ...-.++ --|.+..+.+--.++.+-....+++-+.....+++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----h-HHhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 33444555555555555444444432 1 1122222 23455555444445555554455554444444443 456
Q ss_pred cCCHHHHHHHHHHHHHC-C-----------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044044 406 NKDVEEALSLYSEMLSK-G-----------IKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGL 473 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~-~-----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 473 (508)
.||..+|+..++.-... | -.|.+.....++..|. .+++++|.+.+.++-+.|..|... .+.+.+.+
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 78888888888765542 1 1355565666666554 468889999998888888876443 23344433
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.03 E-value=1.3e+02 Score=28.35 Aligned_cols=165 Identities=11% Similarity=0.053 Sum_probs=82.4
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc---------CCCCC
Q 044044 143 YTHSILINCFCKMGRVSHGFVVLGRILRSC--FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF---------ACEPD 211 (508)
Q Consensus 143 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 211 (508)
..+..+..-|...|+++.|++.|.++.... .......|..+|..-.-.|+|.....+..+.... .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 356667777888888888888888754321 1122334555666656667777766666655443 11222
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccC-CHhHHHHHHHHHHccCCHHHHHHH-----HHHHhhCCCC
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP-NTVTYNTIIDGLCKEGFVDKAKEL-----FLKMKDENIN 285 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~-----~~~~~~~~~~ 285 (508)
...+..+... ..+++..|.+.|-........+...+.| |+.+|. .+.+.+..++-+--..+ |....+
T Consensus 231 l~C~agLa~L--~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~fle---- 303 (466)
T KOG0686|consen 231 LKCAAGLANL--LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLE---- 303 (466)
T ss_pred hHHHHHHHHH--HHHHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHh----
Confidence 2333333333 2346777766665544332222222333 344443 33333333332222222 222222
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 286 PDVVTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
..+..+..+...| .+++...+++++++..
T Consensus 304 l~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 304 LEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred cChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 1233344444433 4677777777777654
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.95 E-value=50 Score=23.69 Aligned_cols=53 Identities=19% Similarity=0.118 Sum_probs=28.1
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 404 CKNKDVEEALSLYSEMLSK----GIKP----TVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~----~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.+.|++.+|.+.+.+..+. +... -....-.+.......|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566666665555444432 1111 012223344556667777777777776654
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.82 E-value=1.2e+02 Score=28.71 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=39.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHH--hHHHHHHHHH--hcCCcchHHHHHHHHHhC
Q 044044 115 GCLAKNKHYDTVLSLFKRLNSAGLFPDIY--THSILINCFC--KMGRVSHGFVVLGRILRS 171 (508)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 171 (508)
..+...+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999886 555544 4455555554 455678888888887654
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.53 E-value=21 Score=22.43 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=12.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 044044 434 LFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
+.-++.+.|++++|.+..+.+.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 44455566666666666665555
No 404
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.22 E-value=21 Score=23.31 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 194 MEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
++..++++.++.. .-|-.-.-.++.++...|++++|.++++++..
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444332 22333444567778888888888887777654
No 405
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.87 E-value=1.1e+02 Score=27.01 Aligned_cols=254 Identities=13% Similarity=0.133 Sum_probs=133.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 191 SRIMEAAALFTKHRVFACEPD---VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
.+.++|+.-|++..+...+.. ..+...++..+.+.|++++....|.++..--... +.-.-+....|.+++......
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA-VTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA-VTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHhhhh
Confidence 466677777777665432222 2234456777777777777777777665311000 000113345566666655555
Q ss_pred CHHHHHHHHHHHhh----CC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHhHHHHHH
Q 044044 268 FVDKAKELFLKMKD----EN-INPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP-----------DVVTFSVIMD 331 (508)
Q Consensus 268 ~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~ 331 (508)
+.+--.++|+.-.+ .. -..--.|-..|...|...|.+.....+++++..+.-.. -...|..-+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55555555443221 10 00011233456677888888888888888876541111 1246777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcC-CCCCHHhHHHHH----HHHHcCCCHHHHHHHH-HHHH---hCCCCCCHHH--HHHHH
Q 044044 332 ELCKNGKMDKASRLLELMIWRG-VNPNTYTYNTLI----DGYCLTDKIDHARKLF-VSME---SNGCMHDVVS--YNTLI 400 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~g~~~~A~~~~-~~~~---~~~~~~~~~~--~~~l~ 400 (508)
.|....+-.....++++.+.-. .-|.+.....+- .+..+.|++++|-.-| +... +.|.+....+ |-.+.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 8888888888888888766432 234444443322 2345678888875433 3332 3342222222 33444
Q ss_pred HHHHhcC----CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 401 NWYCKNK----DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDE 453 (508)
Q Consensus 401 ~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (508)
.++.+.| +.++|. -..-.|.....+.|+.+|. .+++.+-++++..
T Consensus 280 NMLmkS~iNPFDsQEAK-------PyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK-------PYKNDPEILAMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred HHHHHcCCCCCcccccC-------CCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHh
Confidence 4444443 111111 1112355566777877774 3455555555543
No 406
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.63 E-value=13 Score=33.71 Aligned_cols=87 Identities=15% Similarity=-0.036 Sum_probs=34.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044044 336 NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSL 415 (508)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 415 (508)
.|.++.|++.+...++.+ ++....|..-..++.+.+++..|++=+....+.+ +-....|-.-..+..-.|++++|-..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHHH
Confidence 344444444444444332 1223333333344444444444444444444332 11112222222333334444444444
Q ss_pred HHHHHHCCC
Q 044044 416 YSEMLSKGI 424 (508)
Q Consensus 416 ~~~~~~~~~ 424 (508)
+....+.+.
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 444444433
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.56 E-value=42 Score=28.10 Aligned_cols=32 Identities=19% Similarity=0.006 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
.|++..|..++..+...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555555555555555555555555555544
No 408
>PRK09857 putative transposase; Provisional
Probab=61.44 E-value=82 Score=28.55 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=26.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC
Q 044044 440 EIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
..++.++-.++++.+.+. .+........+..-+.+.|..++++++.++|...|+.++
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444444444444333 222222233444444555555556666666666665544
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.15 E-value=58 Score=23.32 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=36.2
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 438 LFEIHQVERALKLFDEMRRN----HVAAD----TYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~----~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
..+.|++.+|.+.+.+..+. +.... ....-.+.......|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45789999997777665532 22221 22233355567788999999999999874
No 410
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=60.99 E-value=2.1e+02 Score=29.79 Aligned_cols=148 Identities=8% Similarity=0.006 Sum_probs=85.0
Q ss_pred HHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH---hcCCcchHHHH
Q 044044 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC---KMGRVSHGFVV 164 (508)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~ 164 (508)
+.-+.-+++-+...+. +...+..||..+.+.|++++....-..|.+. .+.+...|..-+.... ..+...++..+
T Consensus 96 ~~ei~t~~ee~ai~~y--~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSY--KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred hhHHHHHHHHhccccc--chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3334444444444444 7778888999999999999888887777765 2556666666554432 34666777788
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHH-------hcCCHHHHHHHHHHhhhc-CCCCC--Hh---hHHHHHHHHHhcCChHHH
Q 044044 165 LGRILRSCFTPNAVTFTSLIKGLC-------AESRIMEAAALFTKHRVF-ACEPD--VF---TYNTLINGLCRTGHTIVA 231 (508)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~~~-~~~~~--~~---~~~~l~~~~~~~g~~~~A 231 (508)
|++.+..- .++..|.-.+..+. +.++++....+|.+.... |...+ .. .|.-+-..|...-..++.
T Consensus 173 ~ekal~dy--~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv 250 (881)
T KOG0128|consen 173 FEKALGDY--NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQV 250 (881)
T ss_pred HHHHhccc--ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88776543 33444443333332 335666777777765542 22222 11 222222334444444666
Q ss_pred HHHHHHHHh
Q 044044 232 LNLFEEMAN 240 (508)
Q Consensus 232 ~~~~~~~~~ 240 (508)
..+|..-..
T Consensus 251 ~a~~~~el~ 259 (881)
T KOG0128|consen 251 IALFVRELK 259 (881)
T ss_pred HHHHHHHHh
Confidence 666666554
No 411
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.54 E-value=48 Score=34.43 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=58.7
Q ss_pred HhcCCHHHHHHHHHHHHHC------CCCCCHhHHHHHHHHHH---------------hcCCHHHHHHHHHHHHHCCCCCC
Q 044044 404 CKNKDVEEALSLYSEMLSK------GIKPTVVTYNTLFLGLF---------------EIHQVERALKLFDEMRRNHVAAD 462 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~---------------~~g~~~~a~~~~~~~~~~~~~~~ 462 (508)
...|++.+|++.|...+-. .-+-+..-...++..+. ..++.+.+.++-.-.....++|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4678999999999887643 01112222233333331 22334444444333444455554
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHH
Q 044044 463 T--YTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 463 ~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
. .+....+..+.+.+++..|-.+-.++++.+-.|...
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 3 355677888999999999999999999877666553
No 412
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.58 E-value=1.6e+02 Score=27.84 Aligned_cols=173 Identities=16% Similarity=0.192 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCC
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDEN--INPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---------GVQPD 322 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~ 322 (508)
..+.-+.+.|..+|+++.|++.|.+..+-- .......|..+|..-.-.|+|........+.... .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 356778889999999999999999965431 1113345666666667788888777777666543 12233
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCC-CHHhHHHHHHHHHcCCCHHHHH-----HHHHHHHhCCCC
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRG------VNP-NTYTYNTLIDGYCLTDKIDHAR-----KLFVSMESNGCM 390 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~~~~A~-----~~~~~~~~~~~~ 390 (508)
...+..+...+. +++..|.+.|-...... +.| |..+|. .+.+..--++-+--. ..|+...+
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~fle---- 303 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLE---- 303 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHh----
Confidence 334444444333 36666665553332211 122 333443 333333333222111 22333333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhHHHHHH
Q 044044 391 HDVVSYNTLINWYCKNKDVEEALSLYSEMLSK-----GIKPTVVTYNTLF 435 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~ 435 (508)
..+..+..+...| .+++...+++++++... -+.|++.+...+|
T Consensus 304 l~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 304 LEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred cChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 2444455555444 36788888888887654 2445555554444
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.17 E-value=85 Score=25.90 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=16.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 044044 400 INWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 4467777777777777777766
No 414
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.87 E-value=1.6e+02 Score=28.00 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=39.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHH--hcCChhHHHHHHHHHHHc
Q 044044 296 RGFCYANDWNEAKRLFIEMMDQGVQPDVV--TFSVIMDELC--KNGKMDKASRLLELMIWR 352 (508)
Q Consensus 296 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 352 (508)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445889999999999999887 555544 4444545443 466788899998887755
No 415
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=58.51 E-value=1.7e+02 Score=32.31 Aligned_cols=160 Identities=15% Similarity=0.023 Sum_probs=95.4
Q ss_pred HHHhcCCcchHHH------HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh-------hcCCCCCHhhHHH
Q 044044 151 CFCKMGRVSHGFV------VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHR-------VFACEPDVFTYNT 217 (508)
Q Consensus 151 ~~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~ 217 (508)
.....|.+.++.+ ++......-.+.....|..|...+-+.|+.++|+..-.+.. ....+.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444455555555 55544333335567788889999999999999988765532 2222334455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-----CC--CCChh
Q 044044 218 LINGLCRTGHTIVALNLFEEMANGN-GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-----NI--NPDVV 289 (508)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~ 289 (508)
+.......++...|...+....... -.+|...+|...+++.+-..+...++++.|.++.+.+... |. -.+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 6666666667777777776665432 2333334445555566666666668888898888887653 11 12344
Q ss_pred hHHHHHHHHHhcCCHHHHHHH
Q 044044 290 TYTSVIRGFCYANDWNEAKRL 310 (508)
Q Consensus 290 ~~~~l~~~~~~~g~~~~a~~~ 310 (508)
++..+.+.+...+++..|...
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 455555555555555554443
No 416
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.50 E-value=1.4e+02 Score=26.92 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=36.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHhcCChhHHHHHH-HHHHHcCCCCCHHhHHHHHHHHHcCCC
Q 044044 299 CYANDWNEAKRLFIEMMDQGVQPDVV----TFSVIMDELCKNGKMDKASRLL-ELMIWRGVNPNTYTYNTLIDGYCLTDK 373 (508)
Q Consensus 299 ~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (508)
.+...+++......+-.+..--|+.. .|..++++- .|.+-.++. +.+++ ....|.-|+.+++..|+
T Consensus 266 s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsav----eWnKkeelva~qalr-----hlK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAV----EWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQ 336 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHH----hhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCCh
Confidence 33445666655554433333344543 455555543 232222222 22221 23468888999999998
Q ss_pred HHHHH
Q 044044 374 IDHAR 378 (508)
Q Consensus 374 ~~~A~ 378 (508)
.+-..
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 76553
No 417
>PRK10941 hypothetical protein; Provisional
Probab=58.14 E-value=1.4e+02 Score=26.69 Aligned_cols=62 Identities=15% Similarity=0.025 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 180 FTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
.+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++...+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 4556677889999999999999998875 4466667778888999999999999999888764
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.62 E-value=72 Score=28.06 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 432 NTLFLGLFEIHQVERALKLFDEMRR----NHV-AADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
..+..-|...|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++.+.+.-+|
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455556666666666666666542 221 223344555666666677776666654444
No 419
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.29 E-value=30 Score=33.07 Aligned_cols=104 Identities=13% Similarity=-0.014 Sum_probs=51.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044044 330 MDELCKNGKMDKASRLLELMIWRGVNPNTYT-YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (508)
++.+...+.++.|..++.++++. .|+-.. |..-..++.+.+++..|..=+..+++.. +-....|-.-..++...++
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 33445556666666666666654 343222 2222255666666666666555555543 2222233333344444455
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
+.+|...|+.... +.|+..-...++.-|
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 5555555555444 345555444444333
No 420
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=56.61 E-value=44 Score=28.60 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=48.6
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAG 137 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 137 (508)
....++.+.|.+++++++..-|. ....|..+...--+.|+++.|.+.|++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~--w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE--WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch--hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 34567899999999999998877 88899999999999999999999999998864
No 421
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.45 E-value=62 Score=24.04 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 431 YNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666677766666655
No 422
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.14 E-value=95 Score=24.19 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 391 HDVVSYNTLINWYCKNK---DVEEALSLYSEMLSK-GIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
++..+--.+..++.+.. +..+.+.+++++.+. ...-.......|.-++.+.+++++++++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44444444555555444 345566666666652 22222334445555666777777777777666654
No 423
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.88 E-value=1.6e+02 Score=26.84 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=59.9
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCH----
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NINPDVVTYTSVIR-GFCYANDWNEAKRLFIEMMDQGVQPDV---- 323 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 323 (508)
...+......||+-|+-+.|++.+.+..+. |.+.|+.-+..-+. .|....-+.+-++..+.+.+.|...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 446677788899999999999988776544 66666655544333 233333345555666666666643332
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
.+|..+- +....++.+|-.+|-+.+.
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 2343332 3455688888888877654
No 424
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.52 E-value=15 Score=28.19 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=25.1
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 044044 265 KEGFVDKAKELFLKMKDENINPDVVTYTSVIRGF 298 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (508)
..|.-.+|..+|.+|.+.|.+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44666789999999999998887 577777654
No 425
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.46 E-value=1.6e+02 Score=26.20 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=14.8
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHH
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLF 381 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (508)
|+.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4555666666777777776666554
No 426
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.32 E-value=1.5e+02 Score=25.95 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCCCCCCChHHHHHHHHHhH--------HcCCCCC--------CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 044044 78 GQGDINLITPNEALCIFDYML--------RMHPSPP--------PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD 141 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 141 (508)
|..++..|++.+|..-|.+++ +..|..| ....+.....++...|++-++++--.+..... +-+
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-Cch
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHH
Q 044044 142 IYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSL 183 (508)
Q Consensus 142 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (508)
+..|..-..+.+..-+.++|..-|..+++.....-..+-.-|
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
No 427
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=54.27 E-value=1.8e+02 Score=32.12 Aligned_cols=161 Identities=11% Similarity=0.022 Sum_probs=98.9
Q ss_pred HHHhcCChhHHHH------HHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHH-------HhCCCCCCHHhHHH
Q 044044 116 CLAKNKHYDTVLS------LFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRI-------LRSCFTPNAVTFTS 182 (508)
Q Consensus 116 ~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~~~~~ 182 (508)
.....|.+.++.+ +++.....-.++....|..+...+-+.|+.++|+..-.+. .....+-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3445667776666 6653322212455667888888899999999988765443 22222334455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhc-----C--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CccccCCHh
Q 044044 183 LIKGLCAESRIMEAAALFTKHRVF-----A--CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCKPNTV 254 (508)
Q Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~ 254 (508)
+.......+....|...+.+.... | .++...+++.+-..+...++++.|+++++.+....... |...-.+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666667777888777665433 2 23344455555555666689999999998887743221 111234556
Q ss_pred HHHHHHHHHHccCCHHHHHHHH
Q 044044 255 TYNTIIDGLCKEGFVDKAKELF 276 (508)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~ 276 (508)
++..+...+...+++..|....
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 6777777776667666655443
No 428
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.15 E-value=3.3e+02 Score=29.87 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=90.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-------------------Cc-cccCC--HhHHHHHHHHHHccCCHHHHHHHHHH
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEF-------------------GV-VCKPN--TVTYNTIIDGLCKEGFVDKAKELFLK 278 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~-------------------~~-~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 278 (508)
+|...|+..+|+..|.+....-++. |. ..++. ..-|..+++.+-+.+..|.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3566788888888887765432210 11 11222 34567788888888888988888877
Q ss_pred HhhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCChh----------
Q 044044 279 MKDENINPD----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDV----VTFSVIMDELCKNGKMD---------- 340 (508)
Q Consensus 279 ~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~---------- 340 (508)
+++. ++++ ..+++.+.+.....|.+-+|...+-. .||. .....++..++..|.++
T Consensus 1009 AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl 1081 (1480)
T KOG4521|consen 1009 AIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGL 1081 (1480)
T ss_pred HHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccch
Confidence 7765 2222 34577778888888888888776533 2333 24555666667766654
Q ss_pred --HHHH-HHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHH
Q 044044 341 --KASR-LLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKL 380 (508)
Q Consensus 341 --~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (508)
+... +++..-+.........|+.|-..+...+++.+|-.+
T Consensus 1082 ~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1082 EQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 3333 333333332222233455555566677777766543
No 429
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.14 E-value=1.7e+02 Score=26.64 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=34.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
.+..+..+.|+..+|.+.|+++.+..+ ...-......++.++....-+.++..++-+..+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~p-----l~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFP-----LLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 445555567888888888877766431 0111123345666666666666666655555443
No 430
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=54.13 E-value=3.2e+02 Score=29.64 Aligned_cols=181 Identities=15% Similarity=0.106 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH--------HhHHHHHHHHH
Q 044044 267 GFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPDV--------VTFSVIMDELC 334 (508)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~--------~~~~~l~~~~~ 334 (508)
|..---.++|++..+. ++..+........+..|.|+-+.+....+.+. ..+.+. ..|-.-+.++.
T Consensus 670 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (932)
T PRK13184 670 GFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALS 746 (932)
T ss_pred cCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444455666666543 24455666666678889998887777666532 111111 11222344555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHH--hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHH
Q 044044 335 KNGKMDKASRLLELMIWRGVNPNTY--TYNTLIDGYCLTDKIDHARKLFVSMESNGCMH--DVVSYNTLINWYCKNKDVE 410 (508)
Q Consensus 335 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 410 (508)
...+++++.+.+... +|... .+..++.-..-.++.+....+.+.+...-.+. ........|.+|.-..+++
T Consensus 747 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (932)
T PRK13184 747 NKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLK 821 (932)
T ss_pred ccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHH
Confidence 555666666543322 22322 23333333333444444455555554432111 1223345678888899999
Q ss_pred HHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 411 EALSLYSEMLSKGIK-PTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
+|-+++......-.. -....+....--+.-.++-+.|..-|....
T Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 822 KAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 999999765443222 122222222222345566666666665555
No 431
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.70 E-value=28 Score=31.15 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=19.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 044044 109 SFNILFGCLAKNKHYDTVLSLFKRLNSAGLFP 140 (508)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 140 (508)
.|+.-|....+.||+++|+.++++..+.|+.-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 34456666666666666666666666666443
No 432
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=53.67 E-value=1.2e+02 Score=27.46 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=26.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 185 KGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
....+.++..+..+.+..+. ....-...+..+...|++..|++++.+...
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444443 222333445556667777777777766554
No 433
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.27 E-value=1.5e+02 Score=25.78 Aligned_cols=58 Identities=7% Similarity=-0.027 Sum_probs=33.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 044044 258 TIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYA-NDWNEAKRLFIEMM 315 (508)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~ 315 (508)
.++..+-+.|+++++.+.+.++...+...+..-.+.+-.+|-.. |....+.+++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 45566677777788887777777776666666666666665332 44444444444443
No 434
>PRK10941 hypothetical protein; Provisional
Probab=53.03 E-value=1.7e+02 Score=26.16 Aligned_cols=58 Identities=14% Similarity=-0.015 Sum_probs=30.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 364 LIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
+-.+|.+.++++.|..+.+.+.... +.++.-+.--+-.|.+.|.+..|..=++..++.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3344555555555555555555543 334444444455555555555555555555443
No 435
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=52.58 E-value=1.6e+02 Score=27.13 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044044 409 VEEALSLYSEMLSKGIKPTV----VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLC 474 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 474 (508)
.++...++.+++.. -|+. ..|..++......|.++..+.+|++++..|..|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 44666666666664 2343 2345555666666777777777777777776665555555555543
No 436
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.27 E-value=94 Score=23.00 Aligned_cols=79 Identities=11% Similarity=0.043 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLF 451 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 451 (508)
...++|..+.+.+...+. -...+--.-+..+.+.|+|++| +..-. ....||...|..| +-.+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL--~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAAL--CAWKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHH--HHHhhccHHHHHHHH
Confidence 345666666666665542 1122222233445566666666 11111 1234455544443 334556666666665
Q ss_pred HHHHHC
Q 044044 452 DEMRRN 457 (508)
Q Consensus 452 ~~~~~~ 457 (508)
.++...
T Consensus 93 ~rla~~ 98 (116)
T PF09477_consen 93 TRLASS 98 (116)
T ss_dssp HHHCT-
T ss_pred HHHHhC
Confidence 555443
No 437
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.83 E-value=70 Score=28.10 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=12.3
Q ss_pred CCCCCChHHHHHHHHHhHHc
Q 044044 81 DINLITPNEALCIFDYMLRM 100 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~ 100 (508)
++..|++..|+.-|..-...
T Consensus 20 ~l~~~~~~~Av~q~~~H~~~ 39 (247)
T PF11817_consen 20 YLWLNQPTEAVRQFRAHIDR 39 (247)
T ss_pred HHhCCCHHHHHHHHHHHHHH
Confidence 34556777777777655433
No 438
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.27 E-value=1.1e+02 Score=27.60 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=20.4
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 414 SLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
++|+.+.+.++.|.-..+..+.-.+.+.=.+...+.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444555555544444444444444555555555444
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.32 E-value=95 Score=24.58 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=33.4
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 044044 276 FLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNG 337 (508)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 337 (508)
...+.+.|++++. .-..++..+.+.++.-.|.++++++.+.+...+..|-..-++.+...|
T Consensus 9 ~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444455555432 344556666666666777777777776655444444444444444444
No 440
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=50.11 E-value=1.9e+02 Score=25.95 Aligned_cols=63 Identities=8% Similarity=0.095 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK-GIKPTVVTYNTLFLGLFEIHQVERALKLFD 452 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 452 (508)
.++..+...++..+++.+++.+-.+++...... +..-|...|..++......|+..-..++++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 445555556666666666666666666655544 444455566666666666666655555544
No 441
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.02 E-value=2.1e+02 Score=26.23 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCH---hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDV---FTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
..|..+..+.|+..+|.+.|+.+.+. .|-. .+...++.++....-+.....++.+..+.
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44555666789999999999987654 2221 23446777777777777766666655544
No 442
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.84 E-value=1e+02 Score=22.79 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHH
Q 044044 192 RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDK 271 (508)
Q Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (508)
..++|..+.+-+...+. ....+-..-+..+.++|+|++|+ ..-... ..||...|.+|.. .+.|--++
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~~~-------~~pdL~p~~AL~a--~klGL~~~ 87 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQCH-------CYPDLEPWAALCA--WKLGLASA 87 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHTTS---------GGGHHHHHHHH--HHCT-HHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---HhcccC-------CCccHHHHHHHHH--HhhccHHH
Confidence 34555555555544331 12222223344455566666661 111111 3455555544432 35555555
Q ss_pred HHHHHHHHhhC
Q 044044 272 AKELFLKMKDE 282 (508)
Q Consensus 272 a~~~~~~~~~~ 282 (508)
+...+.++...
T Consensus 88 ~e~~l~rla~~ 98 (116)
T PF09477_consen 88 LESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHCT-
T ss_pred HHHHHHHHHhC
Confidence 55555555444
No 443
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.59 E-value=1.3e+02 Score=23.82 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=22.3
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHh
Q 044044 132 RLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVT 179 (508)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 179 (508)
.+.+.|.++... -..+++.+.+.++.-.|.++++.+.+.+...+..|
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 334444433322 23444555555555556666666655544444433
No 444
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.12 E-value=60 Score=19.79 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=16.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 044044 119 KNKHYDTVLSLFKRLNSAGLFPDIYTHSILI 149 (508)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 149 (508)
+.|-..++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555544444443
No 445
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.92 E-value=2e+02 Score=25.80 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=55.3
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--
Q 044044 252 NTVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NINPDVVTYTS-VIRGFCYANDWNEAKRLFIEMMDQGVQPDVV-- 324 (508)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 324 (508)
....+..+...|++.++.+.+.++..+..+. |.+.|+..... |.-.|....-.++-++..+.|.++|...+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 3556777888888888888888777665443 45444332221 2222333334567777777777776533221
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 325 --TFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 325 --~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
+|..+- +....++.+|-.++.+...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 333222 2334567777777666553
No 446
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=48.26 E-value=3.4e+02 Score=28.23 Aligned_cols=86 Identities=15% Similarity=0.090 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C----------CCHhHHHHHHHHH
Q 044044 373 KIDHARKLFVSME-SNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI---K----------PTVVTYNTLFLGL 438 (508)
Q Consensus 373 ~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----------p~~~~~~~l~~~~ 438 (508)
..++....+..+. +.|+..+......++... .|+...++.+++++...|- . .+......|+.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 3455555555444 446667777776666544 5999999999988776431 1 1112233344443
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC
Q 044044 439 FEIHQVERALKLFDEMRRNHVAA 461 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~ 461 (508)
. .++...++.+++++.+.|+.+
T Consensus 257 ~-~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 257 I-NQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred H-cCCHHHHHHHHHHHHHhCCCH
Confidence 3 367777777777777766543
No 447
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.00 E-value=3.4e+02 Score=28.17 Aligned_cols=121 Identities=13% Similarity=0.178 Sum_probs=62.7
Q ss_pred HHHHHHHHHhHHcCCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----------hHHHHHHHHHhc
Q 044044 88 NEALCIFDYMLRMHPS--PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIY----------THSILINCFCKM 155 (508)
Q Consensus 88 ~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~ 155 (508)
++--..+++|..+-.. .....+-..++-.|....+++..+++.+.+.+. ||.. .|...++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 4445566777665444 123345555666677778888888888888763 4322 122222222234
Q ss_pred CCcchHHHHHHHHHhC--CCCCCHHh-----HHHH--HHHHHhcCCHHHHHHHHHHhhhcCCCCCHh
Q 044044 156 GRVSHGFVVLGRILRS--CFTPNAVT-----FTSL--IKGLCAESRIMEAAALFTKHRVFACEPDVF 213 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~--~~~~~~~~-----~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 213 (508)
|+-++|+...-.+++. .+.||... |.-+ -+.|...+..+.|.+.|++.-+. .|+..
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~ 321 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEY 321 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--Cchhh
Confidence 5666666666555543 23344332 1111 12233345556666666665543 44443
No 448
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.97 E-value=76 Score=20.69 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=28.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 044044 438 LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGL-----CKSGFVLEALELF 486 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~A~~~~ 486 (508)
+...|++=+|-++++.+-.....+....+..+|... .+.|+.+.|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 445677777777777766443333455555555543 4567777666553
No 449
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.70 E-value=2.2e+02 Score=26.02 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=62.2
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHh---
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMES----NGCMHDVVSYNTLIN-WYCKNKDVEEALSLYSEMLSKGIKPTVV--- 429 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~--- 429 (508)
...+.....-|++.|+.+.|.+.+.+..+ .|.+.|+..+..-+. .|....-+.+-++..+.+.+.|...+..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34555666789999999999888766544 366677766554333 3444444566667777777776554432
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 430 -TYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 430 -~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
+|..+ -|....++.+|-.+|-+...
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 34333 24456788888888876653
No 450
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=47.02 E-value=3.3e+02 Score=27.78 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=35.7
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCcch
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 160 (508)
+.-+--.+|.+++-++...+ ++--+....++.+.-..+..+...-..|| ..........|.+.+++.+
T Consensus 189 mkHNAE~eAiDlL~Eve~id-----------~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~ 257 (878)
T KOG2005|consen 189 MKHNAEFEAIDLLMEVEGID-----------LLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPR 257 (878)
T ss_pred HhccchhHHHHHHHHhhhHh-----------HHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHH
Confidence 33444566777766553322 12234455556666666666655422333 2234444455555555555
Q ss_pred HHHH
Q 044044 161 GFVV 164 (508)
Q Consensus 161 a~~~ 164 (508)
|+.+
T Consensus 258 al~~ 261 (878)
T KOG2005|consen 258 ALVG 261 (878)
T ss_pred HHHH
Confidence 5443
No 451
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=47.00 E-value=3.7e+02 Score=28.25 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=112.3
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHH---hcCCHHHHHHHHHHhhhcCCCCCHhhHH
Q 044044 140 PDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLC---AESRIMEAAALFTKHRVFACEPDVFTYN 216 (508)
Q Consensus 140 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 216 (508)
-+...+..||..+.+.|++++..+.-..|.+. .+.++..|...+.... ..+...++..+|++.... ..++..|.
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw~ 187 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIWE 187 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHHH
Confidence 35667788999999999998887777777665 2556667766554332 347778888888887654 23344444
Q ss_pred HHHHHH-------HhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH---HHHHccCCHHHHHHHHHHHhhCCCCC
Q 044044 217 TLINGL-------CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII---DGLCKEGFVDKAKELFLKMKDENINP 286 (508)
Q Consensus 217 ~l~~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~ 286 (508)
-.+.-+ ...++++....+|.+....-+.. +......|.... ..|...-..++...+|..-...+.
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~---~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~-- 262 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSH---ITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL-- 262 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhh---hcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc--
Confidence 444333 33467888888888887653211 122233343333 333444444667777766655542
Q ss_pred ChhhHHHHHHHHHh-------cCCHHHHHHH-------HHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 287 DVVTYTSVIRGFCY-------ANDWNEAKRL-------FIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 287 ~~~~~~~l~~~~~~-------~g~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
|..+-+.-+.-..+ ..+.+.+..- +++.... ..+-...|..+++.+.+.|++-.-..+++++..
T Consensus 263 D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 263 DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 22221111111111 1223333322 2222222 223344666777777888887766666666543
No 452
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.81 E-value=1.3e+02 Score=26.32 Aligned_cols=59 Identities=7% Similarity=0.041 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCChhHHHHHHHHHH
Q 044044 292 TSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK-NGKMDKASRLLELMI 350 (508)
Q Consensus 292 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 350 (508)
..++..+-+.|+++++...++++...+...+..--+.+..+|-. .|....+.+++..+.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 34566777889999999999999988766666555555444422 233344444444433
No 453
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.37 E-value=1.2e+02 Score=30.64 Aligned_cols=75 Identities=13% Similarity=0.087 Sum_probs=51.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCcch------HHHHHHHHHhCCCCCCHHhHHHH
Q 044044 112 ILFGCLAKNKHYDTVLSLFKRLNSAG--LFPDIYTHSILINCFCKMGRVSH------GFVVLGRILRSCFTPNAVTFTSL 183 (508)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~------a~~~~~~~~~~~~~~~~~~~~~l 183 (508)
.|+.+|..+|++..+.++++.+...+ -+.=...+|..|+...+.|.++- |.+++++.. +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999987643 22234568888888889987653 333333332 34466777777
Q ss_pred HHHHHh
Q 044044 184 IKGLCA 189 (508)
Q Consensus 184 ~~~~~~ 189 (508)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 454
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.35 E-value=3.9e+02 Score=28.34 Aligned_cols=273 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 044044 115 GCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIM 194 (508)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (508)
..|...|++++|+++-+.-.+. =...+..-...|.+.+++..|.+++.++ ...+..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHhhhcCCCCCHhhHHHHHHHHH---------------------hcCChHHHHHHHHHHHhCCCCCCccccCCH
Q 044044 195 EAAALFTKHRVFACEPDVFTYNTLINGLC---------------------RTGHTIVALNLFEEMANGNGEFGVVCKPNT 253 (508)
Q Consensus 195 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (508)
+++.|-.=+-..+.|...+-..++..+. -....+.....|..... ...+.
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~--------~~~~~ 504 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLV--------LHKDE 504 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHH--------hhHHh
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH--------------------
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIE-------------------- 313 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------------------- 313 (508)
....+.-..+...|+.++...+-.-+.+ |..++.-+.+.|.+++|++++..
T Consensus 505 ~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~ 575 (911)
T KOG2034|consen 505 LNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPK 575 (911)
T ss_pred hhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcH
Q ss_pred -----HHHcCCCCCHHhHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044044 314 -----MMDQGVQPDVVTFSVIMDELCKN---GKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSME 385 (508)
Q Consensus 314 -----~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (508)
....+-.........++..+.+. .....+...++.....-..-+...+|.++..|.+..+-+.-..+-....
T Consensus 576 ~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~ 655 (911)
T KOG2034|consen 576 ETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKF 655 (911)
T ss_pred HHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhh
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 386 SNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
..+. ...-....++.|.+.+.-..+..++..|
T Consensus 656 ~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l 687 (911)
T KOG2034|consen 656 MKSR--VHYDLDYALRLCLKFKKTRACVFLLCML 687 (911)
T ss_pred cccc--ceecHHHHHHHHHHhCccceeeeHHHHH
No 455
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.13 E-value=1.2e+02 Score=30.74 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSK--GIKPTVVTYNTLFLGLFEIHQVE------RALKLFDEMRRNHVAADTYTYNNF 469 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 469 (508)
.+..+|...|++-.+.++++.+... |-+.-...|+..+....+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6788899999999999999888865 22333456777788888888754 3444444433 55677888777
Q ss_pred HHHHHh
Q 044044 470 IDGLCK 475 (508)
Q Consensus 470 i~~~~~ 475 (508)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 456
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.85 E-value=2.3e+02 Score=25.41 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=46.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHhHH-HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIW----RGVNPNTYTYN-TLIDGYCLTDKIDHARKLFVSMESNGCMHDV---- 393 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---- 393 (508)
...+..+...|++.++.+.+.+...+..+ .|.+.|+...- .|.-.|....-.++.++..+.|.++|...+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 44566666677777777666665544333 34444432211 1112233333345566666666666543322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 394 VSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
.+|..+ .+....++.+|-.++.+.+.
T Consensus 195 K~Y~Gi--~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGI--FKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHH--HHHHHHhhHHHHHHHHHHhc
Confidence 122221 12334456666666655543
No 457
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.59 E-value=3e+02 Score=26.54 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCC
Q 044044 267 GFVDKAKELFLKMKDENINPD 287 (508)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~ 287 (508)
.+.+.|+.++..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 444555555555555444433
No 458
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=43.74 E-value=1.6e+02 Score=23.28 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=55.1
Q ss_pred HHHcCCCCCH--HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 044044 349 MIWRGVNPNT--YTYNTLIDGYCLTDKIDHARKLFVSMESNGC-----MHDVVSYNTLINWYCKNKD-VEEALSLYSEML 420 (508)
Q Consensus 349 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 420 (508)
|.+.+..++. ...+.++.-....+++.-...+++.+..... ..+..+|..++.+..+..- --.+..+|.-+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3334444443 2356666666666777777777766633210 2244456777777755554 344566667776
Q ss_pred HCCCCCCHhHHHHHHHHHHhc
Q 044044 421 SKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~ 441 (508)
+.+.+++..-|..++.++.+-
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 666777777777777776554
No 459
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.46 E-value=1.4e+02 Score=22.27 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888888888888776
No 460
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=42.62 E-value=4.8e+02 Score=28.47 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHhcC--CHHHHHHHHHHHHHc
Q 044044 288 VVTYTSVIRGFCYAN--DWNEAKRLFIEMMDQ 317 (508)
Q Consensus 288 ~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~ 317 (508)
......++.+|.+.+ ++++|+....++.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 445667788888887 888898888888765
No 461
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.26 E-value=63 Score=21.34 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=24.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH
Q 044044 175 PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC 223 (508)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (508)
|....++.++..+++..-.++++..+++....| ..+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344455555555555555566666666655555 234444444444443
No 462
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.97 E-value=3.2e+02 Score=26.16 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 044044 215 YNTLINGLCRTGHTIVALNLFEEMANGNGE-FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMK 280 (508)
Q Consensus 215 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (508)
...|++.++-.||+..|+++++.+.-.... +.....-.+.++..+.-+|...+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888899999999999887543221 111123345677778888889999999999998764
No 463
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=41.23 E-value=4.2e+02 Score=27.27 Aligned_cols=44 Identities=14% Similarity=0.017 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT 225 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (508)
-.+|-.|.++|++++|.++..+.... .......+...+..|...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 34566677888888888888554433 233445566666666554
No 464
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.50 E-value=2.4e+02 Score=24.30 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=44.7
Q ss_pred CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044044 355 NPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH---DVVSYN--TLINWYCKNKDVEEALSLYSEMLSKGIKPTVV 429 (508)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (508)
.++..-+|.|+--|.-...+.+|.+.|..- .++.+ +..+++ .-|......|+.++|++....+...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 444445555554454444445555555332 22222 333332 33455567777777777666654332333332
Q ss_pred HHHHHHH----HHHhcCCHHHHHHHHH
Q 044044 430 TYNTLFL----GLFEIHQVERALKLFD 452 (508)
Q Consensus 430 ~~~~l~~----~~~~~g~~~~a~~~~~ 452 (508)
.+..|.. =+.+.|..++|+++.+
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2222221 1234555555555554
No 465
>PRK12798 chemotaxis protein; Reviewed
Probab=40.11 E-value=3.4e+02 Score=25.94 Aligned_cols=237 Identities=11% Similarity=-0.044 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC-CHHHHHHHH
Q 044044 198 ALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG-FVDKAKELF 276 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~ 276 (508)
.+++.+...+..++...-..-...-.-.|+.+++.+.+..+.... .++....|..|+.+-...+ +...|+++|
T Consensus 98 ~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~------l~~~lg~~laLv~a~l~~~~dP~~Al~~l 171 (421)
T PRK12798 98 ATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEY------LPAELGAYLALVQGNLMVATDPATALKLL 171 (421)
T ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhh------cCchhhhHHHHHHHHHhcccCHHHHHHHH
Q ss_pred HHHhhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 277 LKMKDE--NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV---TFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 277 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
+...-. |.-........-+....+.|+.+++..+-.+.... +..+.+ .+..+..++.+.++-..-..+.+.+..
T Consensus 172 D~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~ 250 (421)
T PRK12798 172 DQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSF 250 (421)
T ss_pred HHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccHHHHHHHHHh
Q ss_pred cCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 044044 352 RGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN---GCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTV 428 (508)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 428 (508)
....--...|..+.+.-.-.|+.+-|...-++.... +-.+.....-.-..+-.-..+++++.+.+..+-...+.+..
T Consensus 251 ~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 251 MDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhh
Q ss_pred hHHHHHHHHHHhc
Q 044044 429 VTYNTLFLGLFEI 441 (508)
Q Consensus 429 ~~~~~l~~~~~~~ 441 (508)
...-.-.......
T Consensus 331 r~Ll~AA~~va~~ 343 (421)
T PRK12798 331 RALLEAARSVARQ 343 (421)
T ss_pred HHHHHHHHHHHHH
No 466
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.89 E-value=3.7e+02 Score=26.29 Aligned_cols=365 Identities=10% Similarity=0.042 Sum_probs=190.1
Q ss_pred CChHHHHHHHHHhHHcCCCCCC-----cccHHHHHHHHHhcC-ChhHHHHHHHHHHhCCC-CC--CHHhHHHHHHHHHhc
Q 044044 85 ITPNEALCIFDYMLRMHPSPPP-----VSSFNILFGCLAKNK-HYDTVLSLFKRLNSAGL-FP--DIYTHSILINCFCKM 155 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~ 155 (508)
.+.+.|...++.+......-|+ ..++..|...+.... .+..+..++++.++..- .| .-.....|++.+.-.
T Consensus 61 ~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~id 140 (629)
T KOG2300|consen 61 KNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIID 140 (629)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhh
Confidence 4778888888877644322233 357778888887766 88899999999876421 11 111223455666777
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHhHHHHHHH------HHhcCC---HHHHHHHHHHhhhcCCCCCHh------hH--HHH
Q 044044 156 GRVSHGFVVLGRILRSCFTPNAVTFTSLIKG------LCAESR---IMEAAALFTKHRVFACEPDVF------TY--NTL 218 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~---~~~A~~~~~~~~~~~~~~~~~------~~--~~l 218 (508)
.++..|.+++.--.... .+-...|..++.. +....+ +..+.....++.+. ..+|.. +| +.-
T Consensus 141 kD~~sA~elLavga~sA-d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lq 218 (629)
T KOG2300|consen 141 KDFPSALELLAVGAESA-DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQ 218 (629)
T ss_pred ccchhHHHHHhcccccc-chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHH
Confidence 88888888743221111 1112222222211 122223 34444444445443 233422 11 122
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-------C--ccccCCHhHHHHHH-------------HHHHccCCHHHHHHHH
Q 044044 219 INGLCRTGHTIVALNLFEEMANGNGEF-------G--VVCKPNTVTYNTII-------------DGLCKEGFVDKAKELF 276 (508)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~l~-------------~~~~~~g~~~~a~~~~ 276 (508)
+.-|...|+...+...++++...-... + ....|....+.-+. ..-.-.|-+++|.++-
T Consensus 219 l~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~t 298 (629)
T KOG2300|consen 219 LSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYT 298 (629)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHH
Confidence 334556788888777777765422110 0 00112221111111 1111234555665555
Q ss_pred HHHhhC----CCCC-ChhhHH--------HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH-------HhHHHHHH-HHH
Q 044044 277 LKMKDE----NINP-DVVTYT--------SVIRGFCYANDWNEAKRLFIEMMDQGV-QPDV-------VTFSVIMD-ELC 334 (508)
Q Consensus 277 ~~~~~~----~~~~-~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-------~~~~~l~~-~~~ 334 (508)
++++.. ...+ ....++ .++-+-.-.|++.+|++-+..|.+.-. .|.. .....++. -++
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Confidence 554322 1111 122222 112222346999999999999987521 2221 11222333 345
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHhH--HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH--------HHH--H
Q 044044 335 KNGKMDKASRLLELMIWRGVNPNTYTY--NTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNT--------LIN--W 402 (508)
Q Consensus 335 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--------l~~--~ 402 (508)
..+.++.|..-|....+.....|...+ ..+.-.|.+.|+.+.-.++++.+- +++..++.. ++. .
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glf 454 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLF 454 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHH
Confidence 678899999998887776444443332 334567888888777666666553 232222211 111 2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIK-----PTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
....+++.||...+.+-++..-. ...-....|...+...|+..++.+...-..
T Consensus 455 af~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence 24678999999999887764211 112223344556677888888888775444
No 467
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=39.69 E-value=4.8e+02 Score=27.58 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHh
Q 044044 410 EEALSLYSEMLSK-GIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH-------------VAADTYTYNNFIDGLCK 475 (508)
Q Consensus 410 ~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~~~~~li~~~~~ 475 (508)
++..+.++++.+. |+..+......+... ..|+...|+.++++....+ -..|...+..+++++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred cCCHHHHHHHHHHHHHcCCccCHHHHHHH
Q 044044 476 SGFVLEALELFRAIRDSKYELNIVSYNCL 504 (508)
Q Consensus 476 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 504 (508)
|+.++++.+++++...|+.+....-..+
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLSFSTALQDLA 286 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 468
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.58 E-value=1.1e+02 Score=20.24 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=25.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
....++.++...++..-.++++..+.++...|. -+..+|..-++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 344556666666666666666666666666652 34445544444444
No 469
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.28 E-value=4.4e+02 Score=27.04 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=51.0
Q ss_pred HHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHhHHHHHHHHHH
Q 044044 374 IDHARKLFVS-MESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK-------------PTVVTYNTLFLGLF 439 (508)
Q Consensus 374 ~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------p~~~~~~~l~~~~~ 439 (508)
.++..+.+.. +.+.|+..+......++. ...|+...++.+++++...+.. .+......++.++
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL- 261 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDAL- 261 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHH-
Confidence 3444555544 345577777777766665 4468999999998877654311 1122223344443
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC
Q 044044 440 EIHQVERALKLFDEMRRNHVAA 461 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~ 461 (508)
..|+...++++++++.+.|..+
T Consensus 262 ~~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 262 AQGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HcCCHHHHHHHHHHHHHcCCCH
Confidence 3467777777777777766553
No 470
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.44 E-value=3.3e+02 Score=25.28 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhHHcCCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 87 PNEALCIFDYMLRMHPSP-PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
.++.+.+++.+++.-|.- .-...|-.++......|.++..+.+|++++..|..|=...-..++..+.
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 346666666665554431 1234566666777777777777777777777776665555555555443
No 471
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.05 E-value=1.8e+02 Score=22.27 Aligned_cols=42 Identities=7% Similarity=0.255 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFV 382 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 382 (508)
.+..+|..|..+|+... ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555443322 3344444444555555555555554
No 472
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=37.38 E-value=3.4e+02 Score=25.88 Aligned_cols=61 Identities=11% Similarity=0.011 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 044044 144 THSILINCFCKMGRVSHGFVVLGRILRS--CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHR 204 (508)
Q Consensus 144 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 204 (508)
+...|++...-.|+.+...+.++.+.+. |-.|...+-..+.-+|.-.|++.+|.+.|-...
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666655555555555432 222222111334445555566777777665543
No 473
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.29 E-value=1.5e+02 Score=21.01 Aligned_cols=9 Identities=33% Similarity=0.335 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 044044 374 IDHARKLFV 382 (508)
Q Consensus 374 ~~~A~~~~~ 382 (508)
.+.|.+++.
T Consensus 52 ~~~ar~LL~ 60 (88)
T cd08819 52 ESGARELLK 60 (88)
T ss_pred HHHHHHHHH
Confidence 333333333
No 474
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.26 E-value=2.7e+02 Score=23.89 Aligned_cols=26 Identities=8% Similarity=-0.058 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 432 NTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
-.+.....+.|+.++|.++|.++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34455556667777777777766654
No 475
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.19 E-value=1.5e+02 Score=21.00 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=7.4
Q ss_pred cCCHHHHHHHHHHHH
Q 044044 441 IHQVERALKLFDEMR 455 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~ 455 (508)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344555555555444
No 476
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.41 E-value=1.5e+02 Score=20.87 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 449 KLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
++|+-....|+..|...|..+++.+.-+=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 666666667777777777777776666666777777777775
No 477
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.27 E-value=1.1e+02 Score=29.18 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=44.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhC------CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESN------GCM-HDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+.-.|++.++-.||+..|.++++.+.-. .++ -.+.++-.++-+|.-.+++.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888899999999988766322 111 1344566677888888999999999987664
No 478
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.99 E-value=1.8e+02 Score=21.51 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=8.3
Q ss_pred HHHHHcCCCHHHHHHHHHH
Q 044044 365 IDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~ 383 (508)
+.-|...|+.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444555555444444
No 479
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=35.84 E-value=1.1e+02 Score=19.15 Aligned_cols=24 Identities=21% Similarity=0.059 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 399 LINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
+.-++.+.|++++|.+..+.+++.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444556666666666666666663
No 480
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.46 E-value=1.6e+02 Score=21.81 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 044044 295 IRGFCYANDWNEAKRLFIE 313 (508)
Q Consensus 295 ~~~~~~~g~~~~a~~~~~~ 313 (508)
+..|...|+.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444555555555444
No 481
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.29 E-value=2.7e+02 Score=27.36 Aligned_cols=103 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred cccchhhhhhhhhchhchhHHHHHHHHHhhccCCCC----------CCCCChHHHHHHHHHhHHcCCCC-----------
Q 044044 46 PTTTSKLKESLRLTVKDRASLKKFLKERCKSSGQGD----------INLITPNEALCIFDYMLRMHPSP----------- 104 (508)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~A~~~~~~~~~~~~~~----------- 104 (508)
+.+..+-+....+.......+...+...|...|... .+.|++..|+.+++++.......
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg 244 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIG 244 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Q ss_pred -CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH
Q 044044 105 -PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSIL 148 (508)
Q Consensus 105 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 148 (508)
.+...+..++..+...+....|+.+++++.+.|..|..+....+
T Consensus 245 ~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 245 YHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
No 482
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.15 E-value=3.6e+02 Score=27.38 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC------HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 330 MDELCKNGKMDKASRLLELMIWRGVNPN------TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
.....+..++..+.++|..-..- +..| ......+--+|.+..++|.|.++++++.+.+ +.++.+--.+....
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSF 438 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 044044 404 CKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~ 421 (508)
...|.-++|+........
T Consensus 439 ~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHhcchHHHHHHHHHHHh
No 483
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.00 E-value=3e+02 Score=23.87 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHhHHcCCC
Q 044044 82 INLITPNEALCIFDYMLRMHPS 103 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~ 103 (508)
++.|+++.|+++.+.+++.+..
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCC
Confidence 4667777777777777666544
No 484
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.63 E-value=3e+02 Score=25.09 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044044 343 SRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMES 386 (508)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (508)
.++++.+.+.++.|.-..+..+.-.+.+.=.+.+.+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34555555666666666666665556666666666666666654
No 485
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.42 E-value=4e+02 Score=25.10 Aligned_cols=116 Identities=13% Similarity=0.074 Sum_probs=63.0
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CC------------------
Q 044044 265 KEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-------GV------------------ 319 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~------------------ 319 (508)
..+|.+....++.+ .+-.+.++..+-..+.+.|+.+.|.+++++.+-. .+
T Consensus 22 ~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~ 96 (360)
T PF04910_consen 22 QSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRR 96 (360)
T ss_pred HccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcc
Confidence 34455544444322 2335566777777888888888888777765311 11
Q ss_pred CCCHHhHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-cCCCHHHHHHHHHHHH
Q 044044 320 QPDVVTFSVI---MDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC-LTDKIDHARKLFVSME 385 (508)
Q Consensus 320 ~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 385 (508)
.-|...|.++ +..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+++.+...
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 1122223222 3355566666666666666665554445555555555443 4555655555555543
No 486
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.39 E-value=2.7e+02 Score=23.52 Aligned_cols=64 Identities=14% Similarity=0.043 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 428 VVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
....+.++..|...||++.|-+.|.-+.+.....=...|..=+..+.+.+......+.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 487
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.30 E-value=4.3e+02 Score=25.44 Aligned_cols=21 Identities=19% Similarity=-0.010 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 044044 372 DKIDHARKLFVSMESNGCMHD 392 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~ 392 (508)
.+.+.|...+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555543333
No 488
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=34.07 E-value=4.1e+02 Score=25.13 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCC-CCCH
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTL------------INWYCKNKDVEEALSLYSEMLSKGI-KPTV 428 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~ 428 (508)
..|...+-.+|+.++|..++.+.. +.||..+ ++.|.-.+|+-.|--+-+++..+-+ .|+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 345566667777777777776543 2233222 3455566666666655555544321 2222
Q ss_pred -----hHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 429 -----VTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 429 -----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.-|..++....+.+.+=.+.+.++...+.
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 23555555555666666666666655543
No 489
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.85 E-value=5.7e+02 Score=26.66 Aligned_cols=388 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhc---------C
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLN-SAGLFPDIYTHSILINCFCKM---------G 156 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~---------g 156 (508)
..+.+...+.+.+.+..+....+--.+-..|...|++++|++.--..- ...+.++...+..++.-|... +
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~ 118 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYK 118 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhc
Q ss_pred Ccc-------hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCC-h
Q 044044 157 RVS-------HGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGH-T 228 (508)
Q Consensus 157 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 228 (508)
..+ +-..++++|.+. -.+..-|..++.......+++--.+. +... ..+....+.++..+....+ -
T Consensus 119 ~~~~~~~iD~rL~~iv~rmi~k--cl~d~e~~~aiGia~E~~rld~ie~A---il~~--d~~~~~~~yll~l~~s~v~~~ 191 (929)
T KOG2062|consen 119 NPEQKSPIDQRLRDIVERMIQK--CLDDNEYKQAIGIAFETRRLDIIEEA---ILKS--DSVIGNLTYLLELLISLVNNR 191 (929)
T ss_pred CccccCCCCHHHHHHHHHHHHH--hhhhhHHHHHHhHHhhhhhHHHHHHH---hccc--cccchHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 044044 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAK 308 (508)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 308 (508)
+--.++++.+.... .+.....|..+.++|.-..+.+.+.++++++.+. +......-|.......-..+-+
T Consensus 192 efR~~vlr~lv~~y------~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e----~~~llayQIAFDL~esasQefL 261 (929)
T KOG2062|consen 192 EFRNKVLRLLVKTY------LKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE----DDLLLAYQIAFDLYESASQEFL 261 (929)
T ss_pred HHHHHHHHHHHHHH------ccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc----chhhhHHHHHHHHhhccCHHHH
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044044 309 RLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG 388 (508)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (508)
....+........+......+++.+.- +...+++.+..-..-..|....+..-+.. +..-...|.-+-+.+...|
T Consensus 262 ~~v~~~l~~d~~~de~p~~kii~ILSG----e~tik~~l~FL~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~G 336 (929)
T KOG2062|consen 262 DSVLDRLPADDARDEKPMEKIISILSG----EETIKLYLQFLLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAG 336 (929)
T ss_pred HHHHHHcccccccccChHHHHHHHhcC----chHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcC
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-----------------HHHHHHHHHHCCCCCCHhHH----HHHHHHHHhcCCHHHH
Q 044044 389 CMHDVVSYNTLINWYCKNKDVEE-----------------ALSLYSEMLSKGIKPTVVTY----NTLFLGLFEIHQVERA 447 (508)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~-----------------A~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~~a 447 (508)
..+...+..=+..+.+..+|.+ |.++++-.+-. -.+....| ..+.-++.+.|.....
T Consensus 337 -TT~D~FlR~NL~WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~-~~~~~s~y~EGGalyAlGLIhA~hG~~~ 414 (929)
T KOG2062|consen 337 -TTSDTFLRNNLDWLSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPK-EAGEGSGYKEGGALYALGLIHANHGRGI 414 (929)
T ss_pred -CcchHHHHhchhHHhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCc-cCCCCCCccccchhhhhhccccCcCccH
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHH
Q 044044 448 LKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVS 500 (508)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 500 (508)
.+++.+..+..-.+...+=.+|.-++...|--++ ++|+++.+.-+..+.++
T Consensus 415 ~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~--eiYe~lKevLy~D~Avs 465 (929)
T KOG2062|consen 415 TDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE--EIYEKLKEVLYNDSAVS 465 (929)
T ss_pred HHHHHHHHHhccchhhhhhhhhhccchhcccccH--HHHHHHHHHHhccchhh
No 490
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.36 E-value=3.9e+02 Score=24.68 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=71.8
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGC---MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTL 434 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 434 (508)
...|--=.+-|.+..++..|...|.+-++..+ ..+.+.|+.-..+-...|++..|+.=....+...+. ....|..=
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhh
Confidence 44566667778888899999999988776532 235667887777778889999999888888775322 34455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 044044 435 FLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
..++....++++|..+.++...
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 6777788888888888777654
No 491
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.98 E-value=3.9e+02 Score=24.70 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=69.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC--CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGV-NP--NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTL 399 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (508)
...|.-=.+-|.+..++..|...|.+-++... .| +.+.|+.-..+-...|++..|+.=....+... +.....|-.=
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhh
Confidence 34666677788999999999999988877542 23 35667766666677889988888887777764 3344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 044044 400 INWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
..++.....+++|....++..+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 5566777788888887776644
No 492
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.58 E-value=5.2e+02 Score=25.81 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=50.3
Q ss_pred HHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----C------------CCHhHHHHHHH
Q 044044 374 IDHARKLFVSM-ESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI----K------------PTVVTYNTLFL 436 (508)
Q Consensus 374 ~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~------------p~~~~~~~l~~ 436 (508)
.++....++.. .+.|+..+......++. ...|+...|+..++++...+- . .+......|+.
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 44555555444 44566667666666555 346899999999988754311 1 11222233333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC
Q 044044 437 GLFEIHQVERALKLFDEMRRNHVAA 461 (508)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~~~~~ 461 (508)
+. ..|+.++|+.+++++...|..|
T Consensus 267 ai-~~~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 267 YI-IHRETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 33 3477777777777777776654
No 493
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.45 E-value=3e+02 Score=23.07 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=10.0
Q ss_pred hcCCHHHHHHHHHHHH
Q 044044 475 KSGFVLEALELFRAIR 490 (508)
Q Consensus 475 ~~g~~~~A~~~~~~m~ 490 (508)
+.|+++.|.+.++-|.
T Consensus 133 ~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 133 RKGSFEEAERFLKFME 148 (204)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4566666666666654
No 494
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.33 E-value=6e+02 Score=26.52 Aligned_cols=114 Identities=18% Similarity=0.308 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----------hHHHHHHHHHhcC
Q 044044 271 KAKELFLKMKDENINPD---VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVV----------TFSVIMDELCKNG 337 (508)
Q Consensus 271 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~ 337 (508)
+-...+.+|..+--.|+ ..+...++-.|....+++..+++.+.+... ||.. .|...++---+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 44456667766533343 334455566677778888888888887764 2211 2222233333457
Q ss_pred ChhHHHHHHHHHHHcC--CCCCHHhHHHHH-------HHHHcCCCHHHHHHHHHHHHhC
Q 044044 338 KMDKASRLLELMIWRG--VNPNTYTYNTLI-------DGYCLTDKIDHARKLFVSMESN 387 (508)
Q Consensus 338 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~ 387 (508)
+-++|+...-.+++.. +.||..+...-| ..|...+..+.|.+.|++.-+.
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 7778887776666543 455543321111 2233455677788888877654
No 495
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=32.20 E-value=6.8e+02 Score=27.05 Aligned_cols=81 Identities=15% Similarity=0.035 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR-NHVAADTYTYNNFIDGLCKSGFVLEALELFR 487 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 487 (508)
.++-.+.|.++..---..|..++..-...+...|++..|.+++.++.+ .|-.++...|..++..+...|-- .-..+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHh
Confidence 445556666665531122555566666667778888999998888876 35566777777777777666643 4445555
Q ss_pred HHH
Q 044044 488 AIR 490 (508)
Q Consensus 488 ~m~ 490 (508)
.+.
T Consensus 1291 ~~~ 1293 (1304)
T KOG1114|consen 1291 NWM 1293 (1304)
T ss_pred hhe
Confidence 554
No 496
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.00 E-value=2.4e+02 Score=21.69 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 044044 306 EAKRLFIEMMDQGVQP-DVVTFSVIMDELCKNGKMDKASRLLELM 349 (508)
Q Consensus 306 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 349 (508)
.+.++|..|...|+-. -...|......+...|++++|.+++...
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 8999999999887644 3457888888999999999999999764
No 497
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.86 E-value=1.9e+02 Score=20.58 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=20.2
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 209 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 209 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
+.|......+...+...|++++|++.+-.+...+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3355566666666667777777777666666655
No 498
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.39 E-value=5.4e+02 Score=25.70 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=49.4
Q ss_pred HHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C------------CCHhHHHHHHHHHH
Q 044044 374 IDHARKLFVS-MESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI-K------------PTVVTYNTLFLGLF 439 (508)
Q Consensus 374 ~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~------------p~~~~~~~l~~~~~ 439 (508)
.++....+.. +.+.|+..+......++.. ..|+...|+.+++++...|- . ++......++.++
T Consensus 180 ~~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al- 256 (509)
T PRK14958 180 PLQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL- 256 (509)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-
Confidence 3444444443 3445666676666655544 36899999999988765431 1 1122223333333
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC
Q 044044 440 EIHQVERALKLFDEMRRNHVAAD 462 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~ 462 (508)
..|+.+.++++++++.+.|..|.
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 257 AAKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34677777777777777766554
No 499
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.19 E-value=4.1e+02 Score=24.21 Aligned_cols=69 Identities=16% Similarity=0.473 Sum_probs=36.9
Q ss_pred ccCCHHHHHHHH-HHHhhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 044044 265 KEGFVDKAKELF-LKMKDENINPDV----VTYTSVIRGFCYANDWNEAKRLF-IEMMDQGVQPDVVTFSVIMDELCKNGK 338 (508)
Q Consensus 265 ~~g~~~~a~~~~-~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (508)
+...+++..... ++|++.++ |+. ..|..++++- +|.+-.++. ++.++ ..-+|..++.+++..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsav----eWnKkeelva~qalr-----hlK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAV----EWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHH----hhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCCh
Confidence 344555655544 44555544 343 3466666543 333222221 12222 23468889999999998
Q ss_pred hhHHH
Q 044044 339 MDKAS 343 (508)
Q Consensus 339 ~~~a~ 343 (508)
.+-.+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 77554
No 500
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.96 E-value=3.2e+02 Score=22.93 Aligned_cols=25 Identities=8% Similarity=0.418 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 293 SVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 293 ~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
.++..|-+..+|.+..++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777766666554
Done!