Query 044044
Match_columns 508
No_of_seqs 731 out of 2984
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 19:02:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.7E-37 1.6E-41 308.8 43.9 395 81-492 94-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-35 4.8E-40 298.1 42.8 408 85-507 67-559 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-30 5.8E-35 246.5 44.4 378 82-477 10-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-29 9.2E-34 238.2 46.1 367 113-497 5-371 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.9E-31 6.6E-36 256.9 24.9 206 271-476 8-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 5.8E-31 2E-35 253.6 24.8 188 254-441 27-223 (501)
7 2y4t_A DNAJ homolog subfamily 100.0 3.4E-25 1.2E-29 214.4 38.8 349 88-453 9-405 (450)
8 2gw1_A Mitochondrial precursor 100.0 4.4E-25 1.5E-29 217.3 39.1 409 74-493 9-479 (514)
9 2gw1_A Mitochondrial precursor 99.9 8.4E-25 2.9E-29 215.3 34.9 367 77-458 45-479 (514)
10 3fp2_A TPR repeat-containing p 99.9 2.6E-24 8.7E-29 213.1 36.3 398 75-493 29-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 7.8E-24 2.7E-28 204.8 38.7 349 126-490 11-407 (450)
12 2xm6_A Protein corresponding t 99.9 2.4E-19 8.2E-24 174.9 51.2 352 106-493 38-433 (490)
13 3ieg_A DNAJ homolog subfamily 99.9 7.9E-21 2.7E-25 177.6 38.1 302 107-421 3-334 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2E-20 6.8E-25 174.8 40.1 303 141-457 2-335 (359)
15 3fp2_A TPR repeat-containing p 99.9 4.4E-21 1.5E-25 189.9 36.2 384 107-504 25-468 (537)
16 2xm6_A Protein corresponding t 99.9 5.6E-19 1.9E-23 172.3 46.7 340 83-459 55-434 (490)
17 3hym_B Cell division cycle pro 99.9 4.4E-20 1.5E-24 170.5 33.1 293 174-479 19-321 (330)
18 3hym_B Cell division cycle pro 99.9 4.3E-20 1.5E-24 170.5 32.2 286 145-443 25-320 (330)
19 2ooe_A Cleavage stimulation fa 99.9 6.1E-18 2.1E-22 166.7 43.9 397 84-492 25-492 (530)
20 2ooe_A Cleavage stimulation fa 99.9 4.2E-18 1.4E-22 167.9 42.6 394 94-503 2-468 (530)
21 1fch_A Peroxisomal targeting s 99.9 6.2E-20 2.1E-24 172.3 26.4 266 214-490 66-357 (368)
22 1fch_A Peroxisomal targeting s 99.9 5.4E-20 1.8E-24 172.7 25.5 308 80-418 34-355 (368)
23 4eqf_A PEX5-related protein; a 99.8 8.9E-20 3E-24 171.1 21.8 266 211-488 64-352 (365)
24 1b89_A Protein (clathrin heavy 99.8 1.4E-19 4.9E-24 166.2 21.4 282 83-415 15-304 (449)
25 4g1t_A Interferon-induced prot 99.8 1.2E-17 3.9E-22 162.5 36.3 374 105-501 49-469 (472)
26 4eqf_A PEX5-related protein; a 99.8 7.7E-19 2.6E-23 164.7 24.9 268 176-453 64-352 (365)
27 3cv0_A Peroxisome targeting si 99.8 1.4E-18 4.9E-23 160.0 25.1 266 213-490 22-313 (327)
28 3cv0_A Peroxisome targeting si 99.8 2.2E-18 7.7E-23 158.7 26.4 265 179-455 23-313 (327)
29 3mkr_A Coatomer subunit epsilo 99.8 1.1E-17 3.9E-22 150.5 27.6 272 187-485 9-287 (291)
30 1b89_A Protein (clathrin heavy 99.8 1.1E-18 3.9E-23 160.2 17.4 282 119-450 15-304 (449)
31 3mkr_A Coatomer subunit epsilo 99.8 1.6E-17 5.3E-22 149.6 24.3 247 85-352 13-264 (291)
32 4g1t_A Interferon-induced prot 99.8 6.9E-17 2.3E-21 157.0 29.5 365 78-465 58-468 (472)
33 3spa_A Mtrpol, DNA-directed RN 99.8 1.4E-18 4.9E-23 172.2 12.7 135 357-496 126-264 (1134)
34 1xi4_A Clathrin heavy chain; a 99.8 5.9E-15 2E-19 151.3 38.7 352 81-484 995-1376(1630)
35 1xi4_A Clathrin heavy chain; a 99.8 2.5E-14 8.5E-19 146.7 40.7 323 106-491 984-1308(1630)
36 3e4b_A ALGK; tetratricopeptide 99.8 3.5E-16 1.2E-20 150.2 26.1 371 83-490 15-419 (452)
37 3e4b_A ALGK; tetratricopeptide 99.7 4.2E-16 1.4E-20 149.6 26.1 350 112-496 8-391 (452)
38 3uq3_A Heat shock protein STI1 99.7 6.1E-16 2.1E-20 137.0 24.7 227 252-492 4-236 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.7 4.6E-18 1.6E-22 168.7 10.6 152 321-477 125-286 (1134)
40 3uq3_A Heat shock protein STI1 99.7 1.6E-15 5.4E-20 134.4 25.0 232 177-422 5-236 (258)
41 2pl2_A Hypothetical conserved 99.7 1.5E-15 5E-20 130.6 22.1 198 287-490 4-212 (217)
42 2pl2_A Hypothetical conserved 99.7 1.8E-15 6E-20 130.1 21.7 193 213-417 6-209 (217)
43 1ouv_A Conserved hypothetical 99.7 6.4E-14 2.2E-18 125.2 32.5 225 251-493 4-252 (273)
44 1ouv_A Conserved hypothetical 99.7 7.1E-14 2.4E-18 125.0 31.6 224 211-458 5-252 (273)
45 3u4t_A TPR repeat-containing p 99.7 1.1E-14 3.8E-19 130.1 25.0 235 213-457 4-250 (272)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.3E-15 4.4E-20 136.4 18.3 227 79-317 13-244 (275)
47 2h6f_A Protein farnesyltransfe 99.7 1.4E-14 4.9E-19 134.7 25.6 238 82-334 108-364 (382)
48 3u4t_A TPR repeat-containing p 99.7 1.5E-14 5.2E-19 129.2 24.7 57 112-169 8-64 (272)
49 2h6f_A Protein farnesyltransfe 99.7 2.3E-14 7.8E-19 133.3 25.6 131 108-241 98-229 (382)
50 2ho1_A Type 4 fimbrial biogene 99.7 5.4E-14 1.8E-18 124.1 26.8 198 291-492 40-238 (252)
51 1xnf_A Lipoprotein NLPI; TPR, 99.7 7.3E-15 2.5E-19 131.5 20.5 219 191-421 19-243 (275)
52 2vq2_A PILW, putative fimbrial 99.7 8.8E-14 3E-18 120.2 26.8 212 289-505 9-222 (225)
53 2ho1_A Type 4 fimbrial biogene 99.7 8.9E-14 3.1E-18 122.6 26.4 199 213-421 38-237 (252)
54 2q7f_A YRRB protein; TPR, prot 99.6 8.3E-15 2.9E-19 128.5 18.9 195 76-282 28-222 (243)
55 2vq2_A PILW, putative fimbrial 99.6 2E-13 7E-18 117.9 26.9 59 181-240 12-70 (225)
56 4e6h_A MRNA 3'-END-processing 99.6 2.3E-12 7.9E-17 127.8 37.0 151 87-240 48-222 (679)
57 2q7f_A YRRB protein; TPR, prot 99.6 2.2E-14 7.6E-19 125.7 20.1 27 395-421 195-221 (243)
58 3sf4_A G-protein-signaling mod 99.6 1.6E-14 5.4E-19 137.2 19.6 301 177-479 9-363 (406)
59 4a1s_A PINS, partner of inscut 99.6 2.7E-14 9.1E-19 136.0 19.7 274 181-456 52-371 (411)
60 4a1s_A PINS, partner of inscut 99.6 9.4E-15 3.2E-19 139.1 16.5 274 212-492 48-372 (411)
61 3sf4_A G-protein-signaling mod 99.6 2.7E-14 9.1E-19 135.6 18.9 276 209-491 6-335 (406)
62 2ond_A Cleavage stimulation fa 99.6 5.7E-13 1.9E-17 121.2 26.1 219 88-317 33-270 (308)
63 3ulq_A Response regulator aspa 99.6 2.6E-13 8.9E-18 127.8 23.6 232 258-491 108-367 (383)
64 3ro2_A PINS homolog, G-protein 99.6 9.4E-14 3.2E-18 128.0 19.5 279 180-491 8-331 (338)
65 3ro2_A PINS homolog, G-protein 99.6 5.1E-14 1.8E-18 129.8 17.7 243 214-491 7-291 (338)
66 3ulq_A Response regulator aspa 99.6 1.4E-13 4.9E-18 129.5 20.5 301 117-421 22-367 (383)
67 3vtx_A MAMA; tetratricopeptide 99.6 1.4E-12 4.7E-17 108.8 23.1 174 322-501 4-177 (184)
68 4abn_A Tetratricopeptide repea 99.6 1.1E-13 3.8E-18 133.7 18.5 217 86-313 83-317 (474)
69 2ond_A Cleavage stimulation fa 99.6 5.2E-12 1.8E-16 114.9 28.6 218 270-492 33-270 (308)
70 4abn_A Tetratricopeptide repea 99.5 5.4E-13 1.8E-17 128.9 20.6 215 269-489 84-318 (474)
71 4e6h_A MRNA 3'-END-processing 99.5 5.3E-11 1.8E-15 118.2 35.0 403 85-492 80-570 (679)
72 3vtx_A MAMA; tetratricopeptide 99.5 3.1E-12 1.1E-16 106.7 22.6 166 252-421 4-169 (184)
73 3nf1_A KLC 1, kinesin light ch 99.5 6.1E-14 2.1E-18 127.8 13.0 242 249-491 23-306 (311)
74 3nf1_A KLC 1, kinesin light ch 99.5 1.4E-13 4.7E-18 125.5 13.8 176 176-351 26-223 (311)
75 3q15_A PSP28, response regulat 99.5 8.4E-12 2.9E-16 117.1 25.4 232 256-491 104-364 (378)
76 1hz4_A MALT regulatory protein 99.5 3.6E-11 1.2E-15 112.6 28.1 298 181-492 18-349 (373)
77 3q15_A PSP28, response regulat 99.5 1E-11 3.4E-16 116.6 23.8 302 118-421 23-364 (378)
78 1hz4_A MALT regulatory protein 99.5 4.8E-11 1.6E-15 111.8 27.0 305 145-457 17-349 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.4 6.5E-12 2.2E-16 126.2 18.6 166 106-281 8-173 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.4 1.7E-11 5.7E-16 123.2 20.9 163 324-490 10-172 (723)
81 3as5_A MAMA; tetratricopeptide 99.4 4.5E-11 1.5E-15 99.5 19.9 163 325-491 10-172 (186)
82 3as5_A MAMA; tetratricopeptide 99.4 3.6E-11 1.2E-15 100.1 18.8 165 108-282 9-173 (186)
83 4i17_A Hypothetical protein; T 99.4 1.2E-10 4E-15 100.8 20.9 200 286-499 5-214 (228)
84 3edt_B KLC 2, kinesin light ch 99.3 5.5E-12 1.9E-16 113.0 12.0 235 82-317 12-281 (283)
85 4i17_A Hypothetical protein; T 99.3 2.1E-10 7E-15 99.2 21.5 208 250-469 4-220 (228)
86 1qqe_A Vesicular transport pro 99.3 1E-10 3.5E-15 105.3 20.1 212 268-498 32-273 (292)
87 3edt_B KLC 2, kinesin light ch 99.3 2.4E-11 8E-16 108.8 15.5 227 264-491 12-280 (283)
88 2uy1_A Cleavage stimulation fa 99.3 5.2E-09 1.8E-13 100.9 31.7 362 87-491 11-412 (493)
89 1qqe_A Vesicular transport pro 99.3 5.6E-10 1.9E-14 100.5 20.8 205 89-317 3-228 (292)
90 3mv2_B Coatomer subunit epsilo 99.2 7.5E-09 2.6E-13 91.3 25.3 246 114-388 20-283 (310)
91 2pzi_A Probable serine/threoni 99.2 9.7E-11 3.3E-15 118.3 15.2 174 82-268 402-583 (681)
92 3rjv_A Putative SEL1 repeat pr 99.2 2.7E-09 9.3E-14 90.8 22.0 177 307-495 5-200 (212)
93 3mv2_B Coatomer subunit epsilo 99.2 1.2E-08 3.9E-13 90.1 24.3 179 272-457 85-282 (310)
94 2fo7_A Synthetic consensus TPR 99.2 2E-09 6.7E-14 84.0 17.4 130 360-492 3-132 (136)
95 3urz_A Uncharacterized protein 99.2 1.6E-10 5.6E-15 98.2 11.8 168 80-261 13-198 (208)
96 3dra_A Protein farnesyltransfe 99.2 1.1E-08 3.6E-13 91.3 23.7 220 86-317 48-287 (306)
97 3urz_A Uncharacterized protein 99.2 1.6E-09 5.3E-14 92.1 17.6 111 290-403 6-132 (208)
98 3rjv_A Putative SEL1 repeat pr 99.2 6.3E-09 2.2E-13 88.5 21.1 178 270-459 3-199 (212)
99 3qky_A Outer membrane assembly 99.2 1.5E-09 5E-14 96.0 17.7 171 106-282 14-224 (261)
100 3qky_A Outer membrane assembly 99.2 1.9E-09 6.6E-14 95.2 18.4 188 250-457 12-224 (261)
101 4ga2_A E3 SUMO-protein ligase 99.2 2.4E-10 8.2E-15 91.4 10.8 146 77-227 3-149 (150)
102 2uy1_A Cleavage stimulation fa 99.2 4.4E-08 1.5E-12 94.4 28.6 345 85-456 28-412 (493)
103 2pzi_A Probable serine/threoni 99.1 6.8E-10 2.3E-14 112.1 15.9 173 118-303 402-583 (681)
104 3dra_A Protein farnesyltransfe 99.1 9.9E-08 3.4E-12 85.1 27.0 219 227-456 48-286 (306)
105 2fo7_A Synthetic consensus TPR 99.1 5.2E-09 1.8E-13 81.5 16.9 126 181-315 5-130 (136)
106 2ifu_A Gamma-SNAP; membrane fu 99.1 2.9E-09 9.9E-14 96.5 17.0 227 224-484 3-253 (307)
107 2r5s_A Uncharacterized protein 99.1 1.3E-09 4.4E-14 89.9 13.4 165 107-280 6-171 (176)
108 2vsy_A XCC0866; transferase, g 99.1 1.7E-09 5.7E-14 107.3 16.6 154 84-242 2-158 (568)
109 2ifu_A Gamma-SNAP; membrane fu 99.1 3E-09 1E-13 96.4 16.0 205 83-315 3-222 (307)
110 2r5s_A Uncharacterized protein 99.1 8.9E-10 3E-14 90.9 11.4 154 82-240 17-172 (176)
111 3qou_A Protein YBBN; thioredox 99.1 3.9E-09 1.3E-13 94.5 15.7 166 106-280 116-282 (287)
112 4ga2_A E3 SUMO-protein ligase 99.1 7.9E-10 2.7E-14 88.3 9.8 146 113-268 3-149 (150)
113 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.8E-08 1.3E-12 84.6 20.5 188 287-493 3-214 (225)
114 3qou_A Protein YBBN; thioredox 99.0 8.1E-09 2.8E-13 92.5 16.3 167 320-490 114-282 (287)
115 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.6E-08 1.9E-12 83.5 20.5 188 252-458 3-214 (225)
116 2vsy_A XCC0866; transferase, g 99.0 1.2E-08 4.2E-13 101.1 18.4 155 301-459 2-159 (568)
117 3q7a_A Farnesyltransferase alp 99.0 6E-07 2.1E-11 80.9 26.6 172 86-269 69-258 (349)
118 3u3w_A Transcriptional activat 98.9 4.5E-07 1.5E-11 81.4 23.5 164 328-491 80-265 (293)
119 4f3v_A ESX-1 secretion system 98.9 4.3E-08 1.5E-12 85.3 15.4 186 84-282 19-237 (282)
120 3u3w_A Transcriptional activat 98.9 6.3E-07 2.2E-11 80.4 23.3 163 217-384 80-263 (293)
121 3q7a_A Farnesyltransferase alp 98.9 1.6E-06 5.3E-11 78.2 25.4 173 225-408 67-257 (349)
122 2e2e_A Formate-dependent nitri 98.9 2.4E-08 8.3E-13 82.2 12.5 127 77-207 16-145 (177)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.6E-07 5.6E-12 79.8 18.0 126 291-422 9-150 (213)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.6E-07 5.4E-12 79.8 17.4 130 324-458 7-151 (213)
125 4gco_A Protein STI-1; structur 98.9 8.3E-08 2.8E-12 73.8 14.0 94 361-456 16-109 (126)
126 1a17_A Serine/threonine protei 98.8 1.7E-07 5.9E-12 75.9 16.5 129 359-490 14-144 (166)
127 2qfc_A PLCR protein; TPR, HTH, 98.8 1.3E-06 4.3E-11 78.5 23.4 166 325-490 77-264 (293)
128 3gw4_A Uncharacterized protein 98.8 7.4E-08 2.5E-12 81.1 13.0 84 300-384 4-92 (203)
129 4gco_A Protein STI-1; structur 98.8 3.1E-07 1.1E-11 70.5 15.0 96 325-422 15-110 (126)
130 2qfc_A PLCR protein; TPR, HTH, 98.8 5.4E-07 1.8E-11 80.9 18.5 175 106-281 74-265 (293)
131 3gyz_A Chaperone protein IPGC; 98.8 3E-08 1E-12 78.8 8.9 108 95-206 26-133 (151)
132 1a17_A Serine/threonine protei 98.8 4.6E-07 1.6E-11 73.3 16.5 128 325-455 15-144 (166)
133 4f3v_A ESX-1 secretion system 98.7 5.8E-07 2E-11 78.2 17.4 187 119-317 18-237 (282)
134 3gw4_A Uncharacterized protein 98.7 7.5E-08 2.6E-12 81.1 11.5 158 82-241 3-176 (203)
135 1p5q_A FKBP52, FK506-binding p 98.7 1.2E-08 4.1E-13 93.6 6.9 152 84-240 126-293 (336)
136 2c2l_A CHIP, carboxy terminus 98.7 6E-08 2.1E-12 86.4 11.3 194 211-421 3-198 (281)
137 1na0_A Designed protein CTPR3; 98.7 6.1E-07 2.1E-11 68.4 15.7 97 359-457 10-106 (125)
138 3gyz_A Chaperone protein IPGC; 98.7 1.3E-07 4.3E-12 75.1 11.9 98 177-282 36-133 (151)
139 3dss_A Geranylgeranyl transfer 98.7 5.9E-06 2E-10 74.1 23.4 183 88-282 47-267 (331)
140 2vyi_A SGTA protein; chaperone 98.7 4.8E-07 1.6E-11 69.7 14.6 119 358-479 12-130 (131)
141 2lni_A Stress-induced-phosphop 98.7 4E-07 1.4E-11 70.5 13.8 95 360-456 18-112 (133)
142 2c2l_A CHIP, carboxy terminus 98.7 7.3E-08 2.5E-12 85.9 10.7 195 176-387 3-199 (281)
143 2vgx_A Chaperone SYCD; alterna 98.7 5.3E-08 1.8E-12 77.3 8.7 110 93-206 9-118 (148)
144 2vgx_A Chaperone SYCD; alterna 98.7 1.2E-07 4.1E-12 75.3 10.2 98 358-457 21-118 (148)
145 2e2e_A Formate-dependent nitri 98.7 3.7E-07 1.3E-11 75.0 13.6 119 155-282 23-144 (177)
146 2lni_A Stress-induced-phosphop 98.7 7.2E-07 2.5E-11 69.0 14.5 118 322-442 15-132 (133)
147 1p5q_A FKBP52, FK506-binding p 98.7 5.1E-07 1.7E-11 82.7 15.6 123 323-447 147-283 (336)
148 1na0_A Designed protein CTPR3; 98.7 1.4E-06 4.6E-11 66.4 15.7 112 324-438 10-121 (125)
149 2vyi_A SGTA protein; chaperone 98.6 8.5E-07 2.9E-11 68.3 13.5 57 183-240 18-74 (131)
150 2xcb_A PCRH, regulatory protei 98.6 1.7E-07 5.8E-12 73.9 8.9 110 93-206 6-115 (142)
151 4gcn_A Protein STI-1; structur 98.6 9.5E-07 3.2E-11 67.9 13.0 60 361-421 11-70 (127)
152 4gcn_A Protein STI-1; structur 98.6 1E-06 3.6E-11 67.6 13.1 109 393-504 8-122 (127)
153 3dss_A Geranylgeranyl transfer 98.6 7.8E-05 2.7E-09 66.9 26.8 96 193-297 90-188 (331)
154 2fbn_A 70 kDa peptidylprolyl i 98.6 9.9E-08 3.4E-12 80.2 7.6 88 178-273 89-176 (198)
155 4b4t_Q 26S proteasome regulato 98.6 1.4E-06 4.8E-11 83.0 16.5 197 83-281 16-244 (434)
156 3upv_A Heat shock protein STI1 98.6 1.4E-06 4.8E-11 66.8 13.5 94 361-456 7-100 (126)
157 3upv_A Heat shock protein STI1 98.6 1.2E-06 4.1E-11 67.2 12.5 98 393-492 4-101 (126)
158 1elw_A TPR1-domain of HOP; HOP 98.5 4E-06 1.4E-10 63.0 15.1 94 361-456 7-100 (118)
159 1wao_1 Serine/threonine protei 98.5 1.1E-06 3.7E-11 84.6 13.6 124 74-201 9-134 (477)
160 2fbn_A 70 kDa peptidylprolyl i 98.5 2.2E-06 7.6E-11 71.8 13.9 95 394-490 89-184 (198)
161 2kck_A TPR repeat; tetratricop 98.5 1.9E-06 6.6E-11 64.1 12.3 98 177-282 6-106 (112)
162 3sz7_A HSC70 cochaperone (SGT) 98.5 3.3E-06 1.1E-10 68.2 14.4 95 360-456 13-107 (164)
163 3q49_B STIP1 homology and U bo 98.5 6.7E-06 2.3E-10 63.9 15.7 98 357-456 8-105 (137)
164 2xcb_A PCRH, regulatory protei 98.5 2.3E-06 7.8E-11 67.3 12.7 95 360-456 20-114 (142)
165 1elw_A TPR1-domain of HOP; HOP 98.5 6.7E-06 2.3E-10 61.7 14.7 94 180-281 7-100 (118)
166 4b4t_Q 26S proteasome regulato 98.5 1.1E-05 3.7E-10 76.8 19.3 197 260-456 11-244 (434)
167 3q49_B STIP1 homology and U bo 98.5 5.8E-06 2E-10 64.3 14.3 101 390-492 6-106 (137)
168 2kck_A TPR repeat; tetratricop 98.4 2.7E-06 9.2E-11 63.3 11.7 99 106-206 5-106 (112)
169 1elr_A TPR2A-domain of HOP; HO 98.4 2.1E-06 7.3E-11 66.0 11.3 97 360-457 6-108 (131)
170 3sz7_A HSC70 cochaperone (SGT) 98.4 4.5E-06 1.6E-10 67.4 13.6 96 178-281 12-107 (164)
171 2dba_A Smooth muscle cell asso 98.4 1.3E-05 4.3E-10 63.2 15.6 97 358-457 28-128 (148)
172 1hxi_A PEX5, peroxisome target 98.4 3.9E-06 1.3E-10 63.7 11.6 91 398-490 22-112 (121)
173 1hxi_A PEX5, peroxisome target 98.4 3.7E-06 1.3E-10 63.9 10.9 93 362-456 21-113 (121)
174 2dba_A Smooth muscle cell asso 98.4 1.5E-05 5.2E-10 62.7 14.9 98 106-206 27-128 (148)
175 1elr_A TPR2A-domain of HOP; HO 98.3 4.3E-06 1.5E-10 64.2 11.0 113 177-296 4-120 (131)
176 3ro3_A PINS homolog, G-protein 98.3 2.6E-06 8.9E-11 68.3 9.7 132 360-491 11-157 (164)
177 3ro3_A PINS homolog, G-protein 98.3 4.5E-06 1.5E-10 66.9 10.4 138 178-316 10-157 (164)
178 1dce_A Protein (RAB geranylger 98.3 1.4E-05 4.8E-10 78.3 15.6 174 86-271 44-244 (567)
179 1wao_1 Serine/threonine protei 98.3 2.9E-06 1E-10 81.6 10.3 87 333-421 16-102 (477)
180 2xev_A YBGF; tetratricopeptide 98.3 3.8E-05 1.3E-09 58.8 14.6 91 365-457 9-105 (129)
181 3k9i_A BH0479 protein; putativ 98.2 2.8E-06 9.6E-11 64.1 7.4 86 155-241 3-90 (117)
182 1ihg_A Cyclophilin 40; ppiase 98.2 1.3E-05 4.6E-10 74.1 13.4 140 323-484 223-362 (370)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.2E-05 7.7E-10 75.0 15.1 90 358-449 317-406 (457)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2E-05 6.7E-10 75.4 14.2 151 122-281 249-414 (457)
185 2xev_A YBGF; tetratricopeptide 98.2 5.7E-05 1.9E-09 57.8 14.2 95 110-206 5-105 (129)
186 3rkv_A Putative peptidylprolyl 98.2 1.4E-05 4.8E-10 64.3 11.0 99 358-457 11-126 (162)
187 1dce_A Protein (RAB geranylger 98.2 9.2E-05 3.1E-09 72.5 18.5 173 304-481 45-244 (567)
188 3rkv_A Putative peptidylprolyl 98.2 2.4E-05 8.3E-10 62.9 12.1 99 323-422 11-126 (162)
189 1klx_A Cysteine rich protein B 98.2 8.6E-05 2.9E-09 57.7 14.8 88 364-457 31-126 (138)
190 2hr2_A Hypothetical protein; a 98.2 5.7E-05 2E-09 59.2 13.3 61 430-490 59-129 (159)
191 1klx_A Cysteine rich protein B 98.2 7.7E-05 2.6E-09 58.0 14.3 113 372-495 9-129 (138)
192 3k9i_A BH0479 protein; putativ 98.2 3.5E-06 1.2E-10 63.6 6.3 85 371-456 3-89 (117)
193 1ihg_A Cyclophilin 40; ppiase 98.1 3.1E-05 1.1E-09 71.7 13.6 140 288-449 223-362 (370)
194 2if4_A ATFKBP42; FKBP-like, al 98.1 9.4E-06 3.2E-10 74.3 9.3 148 323-491 179-327 (338)
195 2hr2_A Hypothetical protein; a 98.1 5.2E-05 1.8E-09 59.4 12.0 96 180-282 14-131 (159)
196 3n71_A Histone lysine methyltr 98.0 1.9E-05 6.5E-10 75.5 10.4 124 368-491 319-463 (490)
197 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.6E-10 72.6 9.3 147 144-317 181-328 (338)
198 3n71_A Histone lysine methyltr 98.0 2.4E-05 8.4E-10 74.7 10.4 131 221-351 318-463 (490)
199 2kat_A Uncharacterized protein 97.9 2.4E-05 8.1E-10 58.7 7.5 80 89-171 3-82 (115)
200 2l6j_A TPR repeat-containing p 97.9 1.4E-05 4.7E-10 59.4 5.0 93 176-276 3-101 (111)
201 1zu2_A Mitochondrial import re 97.9 3.6E-05 1.2E-09 60.2 7.3 84 85-171 16-120 (158)
202 2l6j_A TPR repeat-containing p 97.9 1.5E-05 5.1E-10 59.2 4.9 91 393-485 4-100 (111)
203 2kat_A Uncharacterized protein 97.8 0.00017 5.8E-09 53.9 10.5 78 377-456 4-81 (115)
204 1zu2_A Mitochondrial import re 97.8 4E-05 1.4E-09 59.9 6.6 95 372-470 16-131 (158)
205 1na3_A Designed protein CTPR2; 97.7 0.00037 1.2E-08 49.2 10.5 60 396-456 12-71 (91)
206 1na3_A Designed protein CTPR2; 97.7 0.00046 1.6E-08 48.6 10.8 81 358-440 9-89 (91)
207 3ma5_A Tetratricopeptide repea 97.6 0.0003 1E-08 50.9 8.5 65 391-456 5-69 (100)
208 3ma5_A Tetratricopeptide repea 97.6 0.00026 8.9E-09 51.3 8.0 64 176-240 6-69 (100)
209 3ly7_A Transcriptional activat 97.4 0.0062 2.1E-07 54.9 15.1 147 97-257 186-347 (372)
210 3qww_A SET and MYND domain-con 97.2 0.0011 3.8E-08 62.2 8.6 85 406-490 311-409 (433)
211 3qwp_A SET and MYND domain-con 97.1 0.0022 7.5E-08 60.3 10.5 99 218-316 293-399 (429)
212 3qww_A SET and MYND domain-con 97.1 0.0011 3.6E-08 62.3 8.2 93 224-316 310-410 (433)
213 3ly7_A Transcriptional activat 97.1 0.0058 2E-07 55.1 12.4 126 85-216 213-347 (372)
214 3u64_A Protein TP_0956; tetrat 97.1 0.11 3.8E-06 44.9 19.1 85 193-285 179-272 (301)
215 3qwp_A SET and MYND domain-con 97.0 0.004 1.4E-07 58.5 11.0 62 395-456 331-399 (429)
216 2kc7_A BFR218_protein; tetratr 97.0 0.0021 7.3E-08 46.1 7.2 57 400-457 7-64 (99)
217 3mkq_A Coatomer beta'-subunit; 97.0 0.036 1.2E-06 57.2 18.8 156 261-455 607-763 (814)
218 2kc7_A BFR218_protein; tetratr 96.9 0.0026 8.7E-08 45.6 7.1 58 184-242 7-65 (99)
219 3mkq_A Coatomer beta'-subunit; 96.9 0.02 7E-07 59.0 16.0 155 296-489 607-762 (814)
220 1wy6_A Hypothetical protein ST 96.8 0.079 2.7E-06 39.4 13.5 139 335-495 19-157 (172)
221 1pc2_A Mitochondria fission pr 96.7 0.02 6.8E-07 44.2 10.2 82 374-457 14-100 (152)
222 3mkq_B Coatomer subunit alpha; 96.7 0.098 3.4E-06 41.5 14.4 130 330-489 12-141 (177)
223 1pc2_A Mitochondria fission pr 96.6 0.011 3.6E-07 45.7 8.6 88 408-499 13-105 (152)
224 3bee_A Putative YFRE protein; 96.6 0.018 6.2E-07 40.6 9.1 47 375-422 26-72 (93)
225 3mkq_B Coatomer subunit alpha; 96.6 0.2 6.7E-06 39.8 16.7 131 295-455 12-142 (177)
226 3bee_A Putative YFRE protein; 96.5 0.05 1.7E-06 38.3 11.0 68 174-242 3-73 (93)
227 3lvg_A Clathrin heavy chain 1; 96.4 0.00062 2.1E-08 62.7 0.2 137 80-232 63-219 (624)
228 3u64_A Protein TP_0956; tetrat 96.2 0.038 1.3E-06 47.7 10.4 107 374-490 179-296 (301)
229 3lvg_A Clathrin heavy chain 1; 96.1 4.1E-06 1.4E-10 76.7 -14.9 265 106-413 53-324 (624)
230 2v5f_A Prolyl 4-hydroxylase su 96.1 0.058 2E-06 38.9 9.7 67 391-457 3-75 (104)
231 2v5f_A Prolyl 4-hydroxylase su 96.0 0.088 3E-06 37.9 10.3 66 357-422 4-75 (104)
232 4h7y_A Dual specificity protei 95.8 0.078 2.7E-06 40.4 9.0 103 322-426 12-127 (161)
233 1nzn_A CGI-135 protein, fissio 95.7 0.049 1.7E-06 40.4 7.7 66 426-491 33-102 (126)
234 4h7y_A Dual specificity protei 95.7 0.11 3.9E-06 39.5 9.7 51 442-493 74-124 (161)
235 1nzn_A CGI-135 protein, fissio 94.9 0.13 4.4E-06 38.2 7.8 82 374-457 17-103 (126)
236 2wpv_A GET4, UPF0363 protein Y 94.8 2 6.8E-05 37.8 17.8 81 251-350 132-215 (312)
237 4b4t_P 26S proteasome regulato 94.5 3.2 0.00011 39.0 18.7 95 361-455 140-245 (445)
238 1wy6_A Hypothetical protein ST 94.3 1.2 4E-05 33.3 16.1 65 289-354 92-156 (172)
239 4ady_A RPN2, 26S proteasome re 94.3 5.6 0.00019 40.8 30.3 260 221-490 383-656 (963)
240 1qsa_A Protein (soluble lytic 94.1 4.8 0.00016 39.5 25.4 150 338-491 229-409 (618)
241 4b4t_P 26S proteasome regulato 94.1 1.4 4.8E-05 41.4 15.0 194 85-281 30-246 (445)
242 2ff4_A Probable regulatory pro 94.0 0.29 9.9E-06 45.2 9.9 58 397-455 175-232 (388)
243 4ady_A RPN2, 26S proteasome re 94.0 6.4 0.00022 40.4 25.9 153 298-455 500-656 (963)
244 4gns_B Protein CSD3, chitin bi 93.8 0.32 1.1E-05 48.6 10.4 50 439-489 348-397 (754)
245 3txn_A 26S proteasome regulato 93.3 4.9 0.00017 36.8 20.5 241 254-499 20-290 (394)
246 3o48_A Mitochondria fission 1 93.2 1.4 4.7E-05 32.9 10.2 66 391-456 38-106 (134)
247 4gns_B Protein CSD3, chitin bi 92.5 0.86 2.9E-05 45.6 11.1 44 461-506 611-654 (754)
248 3lpz_A GET4 (YOR164C homolog); 92.5 5.5 0.00019 35.3 18.2 83 250-351 133-215 (336)
249 4fhn_B Nucleoporin NUP120; pro 92.2 4 0.00014 43.7 16.6 142 218-373 818-986 (1139)
250 1y8m_A FIS1; mitochondria, unk 92.1 3 0.0001 31.5 12.2 68 390-457 36-106 (144)
251 1v54_E Cytochrome C oxidase po 91.5 1.1 3.9E-05 31.2 7.4 62 408-470 25-86 (109)
252 2ff4_A Probable regulatory pro 91.4 0.9 3.1E-05 41.9 9.4 68 362-430 175-247 (388)
253 3ffl_A Anaphase-promoting comp 89.2 1.8 6.3E-05 33.7 7.8 24 181-204 126-149 (167)
254 1v54_E Cytochrome C oxidase po 89.2 4.3 0.00015 28.4 9.1 62 192-260 25-86 (109)
255 3o48_A Mitochondria fission 1 89.2 5.5 0.00019 29.7 10.1 65 426-490 38-105 (134)
256 4fhn_B Nucleoporin NUP120; pro 89.1 11 0.00037 40.4 16.5 87 253-341 899-989 (1139)
257 2y69_E Cytochrome C oxidase su 88.9 4.3 0.00015 30.2 9.0 49 409-457 69-117 (152)
258 3ffl_A Anaphase-promoting comp 88.3 3.4 0.00012 32.2 8.8 58 257-314 24-89 (167)
259 2p58_C Putative type III secre 87.7 5.2 0.00018 27.9 8.2 49 438-492 50-98 (116)
260 2y69_E Cytochrome C oxidase su 86.5 7.5 0.00026 28.9 9.1 61 193-260 69-129 (152)
261 2uwj_G Type III export protein 86.0 4.9 0.00017 27.9 7.4 49 438-492 49-97 (115)
262 4b4t_R RPN7, 26S proteasome re 85.3 4.6 0.00016 37.7 9.9 98 360-457 133-237 (429)
263 1y8m_A FIS1; mitochondria, unk 84.0 12 0.00041 28.3 12.2 68 355-422 36-106 (144)
264 1qsa_A Protein (soluble lytic 83.7 35 0.0012 33.4 28.3 116 372-491 228-347 (618)
265 1zbp_A Hypothetical protein VP 83.4 2.3 8E-05 36.1 6.1 53 82-136 8-60 (273)
266 4b4t_R RPN7, 26S proteasome re 81.6 20 0.00068 33.3 12.6 99 144-242 133-238 (429)
267 3lpz_A GET4 (YOR164C homolog); 81.3 29 0.00098 30.8 21.2 81 391-490 134-214 (336)
268 2wpv_A GET4, UPF0363 protein Y 81.3 27 0.00094 30.6 19.6 25 392-416 133-157 (312)
269 2p58_C Putative type III secre 80.3 13 0.00043 26.0 8.2 16 221-236 49-64 (116)
270 1zbp_A Hypothetical protein VP 79.6 6.4 0.00022 33.5 7.4 55 367-422 6-60 (273)
271 2uwj_G Type III export protein 79.4 12 0.00042 26.0 7.3 13 222-234 49-61 (115)
272 3esl_A Checkpoint serine/threo 78.6 22 0.00075 28.7 9.9 53 339-391 95-148 (202)
273 3esl_A Checkpoint serine/threo 76.9 28 0.00095 28.1 10.1 72 390-461 74-148 (202)
274 3txn_A 26S proteasome regulato 73.6 54 0.0019 29.9 24.0 27 178-204 20-46 (394)
275 2d2s_A Exocyst complex compone 71.6 31 0.0011 28.8 9.7 21 365-385 25-45 (235)
276 3eiq_C Programmed cell death p 71.5 47 0.0016 29.8 11.3 24 362-385 221-244 (358)
277 4a1g_A Mitotic checkpoint seri 64.3 46 0.0016 25.5 9.0 50 342-391 84-134 (152)
278 3eiq_C Programmed cell death p 63.7 59 0.002 29.2 10.3 27 255-281 56-82 (358)
279 4a1g_A Mitotic checkpoint seri 57.9 61 0.0021 24.8 9.7 50 412-461 84-134 (152)
280 2wvi_A Mitotic checkpoint seri 55.7 70 0.0024 24.8 9.3 50 342-391 79-129 (164)
281 3kae_A CDC27, possible protein 52.6 73 0.0025 24.9 7.5 26 464-489 115-140 (242)
282 2wvi_A Mitotic checkpoint seri 52.1 81 0.0028 24.5 9.6 71 390-463 60-131 (164)
283 1k1a_A B-cell lymphoma 3-encod 51.8 54 0.0018 26.9 8.0 26 260-285 13-38 (241)
284 2zu6_B Programmed cell death p 49.6 1.2E+02 0.0042 26.4 9.8 73 396-469 169-243 (307)
285 1wdy_A 2-5A-dependent ribonucl 47.7 65 0.0022 27.1 8.1 18 114-131 9-26 (285)
286 4aez_C MAD3, mitotic spindle c 44.3 84 0.0029 25.8 7.3 52 410-461 131-183 (223)
287 3pvs_A Replication-associated 44.1 2E+02 0.0069 26.7 12.9 34 336-369 268-301 (447)
288 4b4t_S RPN3, 26S proteasome re 43.6 1.8E+02 0.0062 27.6 10.4 65 323-387 231-299 (523)
289 4gq2_M Nucleoporin NUP120; bet 43.0 2.1E+02 0.0073 29.8 12.1 48 325-372 899-950 (950)
290 2r9g_A AAA ATPase, central reg 42.2 1.3E+02 0.0046 24.1 10.2 36 406-442 27-62 (204)
291 3qil_A Clathrin heavy chain 1; 41.6 6.1 0.00021 28.6 0.2 77 75-164 10-86 (125)
292 4gq2_M Nucleoporin NUP120; bet 40.4 1.8E+02 0.0062 30.3 11.1 110 364-491 816-925 (950)
293 4ets_A Ferric uptake regulatio 40.4 73 0.0025 24.6 6.3 45 148-192 38-84 (162)
294 4aez_C MAD3, mitotic spindle c 39.5 1.1E+02 0.0036 25.2 7.2 51 341-391 132-183 (223)
295 3bge_A Predicted ATPase; struc 38.6 1.5E+02 0.0052 23.7 8.8 21 371-391 20-40 (201)
296 2d2s_A Exocyst complex compone 38.2 1.7E+02 0.0059 24.3 9.6 27 357-383 90-116 (235)
297 2ion_A PDCD4, programmed cell 38.0 1.3E+02 0.0045 22.9 8.1 65 360-425 11-77 (152)
298 2ijq_A Hypothetical protein; s 37.5 1.4E+02 0.0048 23.0 8.2 54 438-491 42-103 (161)
299 2ion_A PDCD4, programmed cell 37.3 1.4E+02 0.0047 22.8 7.9 63 325-388 11-75 (152)
300 2keb_A DNA polymerase subunit 36.0 1.1E+02 0.0037 21.2 6.8 28 449-476 30-57 (101)
301 1wdy_A 2-5A-dependent ribonucl 35.4 1.3E+02 0.0046 25.1 8.1 13 149-161 9-21 (285)
302 2xig_A Ferric uptake regulatio 35.4 1.4E+02 0.0049 22.6 7.2 59 279-338 18-76 (150)
303 4b4t_S RPN3, 26S proteasome re 35.1 3E+02 0.01 26.1 11.1 64 108-171 232-299 (523)
304 3bge_A Predicted ATPase; struc 34.4 1.8E+02 0.0061 23.3 8.9 34 266-299 20-53 (201)
305 3hra_A Ankyrin repeat family p 34.2 1.3E+02 0.0043 23.6 7.3 14 118-131 13-26 (201)
306 2ijq_A Hypothetical protein; s 33.8 1.6E+02 0.0056 22.7 8.2 52 265-316 44-103 (161)
307 1k1a_A B-cell lymphoma 3-encod 33.5 1.7E+02 0.0058 23.7 8.2 25 115-139 14-38 (241)
308 2b7e_A PRE-mRNA processing pro 33.4 57 0.002 20.1 3.6 30 87-117 2-31 (59)
309 2nsz_A Programmed cell death p 33.3 1.4E+02 0.0049 21.9 9.4 25 361-385 10-34 (129)
310 2f6m_A Suppressor protein STP2 32.8 65 0.0022 20.4 3.8 45 179-224 4-48 (65)
311 3ctd_A Putative ATPase, AAA fa 30.4 2.2E+02 0.0075 23.1 9.6 17 372-388 49-65 (213)
312 3ctd_A Putative ATPase, AAA fa 30.3 2.2E+02 0.0075 23.1 9.3 55 266-320 48-107 (213)
313 2nsz_A Programmed cell death p 30.2 1.6E+02 0.0056 21.6 9.3 22 398-419 12-33 (129)
314 3bu8_A Telomeric repeat-bindin 30.1 2.2E+02 0.0077 23.2 10.7 22 220-241 122-143 (235)
315 3kea_A K1L; tropism, ANK repea 29.4 1.1E+02 0.0037 26.1 6.4 22 400-421 165-186 (285)
316 2fe3_A Peroxide operon regulat 29.4 1.8E+02 0.0061 21.8 7.2 42 150-191 29-70 (145)
317 3lxu_X Tripeptidyl-peptidase 2 28.8 6E+02 0.02 27.6 13.3 32 86-119 1122-1153(1354)
318 3eyy_A Putative iron uptake re 28.7 1.9E+02 0.0063 21.7 7.6 57 133-191 10-66 (145)
319 1mzb_A Ferric uptake regulatio 28.1 1.5E+02 0.0052 21.9 6.2 59 279-338 9-68 (136)
320 4ets_A Ferric uptake regulatio 27.9 1.5E+02 0.005 22.9 6.2 57 171-228 27-85 (162)
321 1ug3_A EIF4GI, eukaryotic prot 27.5 2.9E+02 0.0099 24.4 8.9 25 180-204 14-38 (339)
322 2zu6_B Programmed cell death p 27.1 3.1E+02 0.011 23.8 12.4 66 361-427 169-236 (307)
323 3eyy_A Putative iron uptake re 27.0 2E+02 0.0068 21.5 6.8 52 107-159 18-69 (145)
324 3pvs_A Replication-associated 26.9 3.8E+02 0.013 24.8 13.8 37 301-337 268-304 (447)
325 2w57_A Ferric uptake regulatio 26.6 1.7E+02 0.0058 22.1 6.3 60 279-339 8-68 (150)
326 2xig_A Ferric uptake regulatio 26.2 2.1E+02 0.0072 21.6 8.2 58 133-191 18-75 (150)
327 3jxi_A Vanilloid receptor-rela 26.2 49 0.0017 27.7 3.5 54 115-168 10-72 (260)
328 3ygs_P Procaspase 9; apoptosis 25.9 1.2E+02 0.0041 20.9 4.8 33 122-158 52-84 (97)
329 3bu8_A Telomeric repeat-bindin 25.8 2.7E+02 0.0093 22.7 11.2 85 121-205 33-142 (235)
330 3t8k_A Uncharacterized protein 25.5 2.4E+02 0.0083 22.0 8.7 128 367-495 44-183 (186)
331 2fe3_A Peroxide operon regulat 25.2 2.2E+02 0.0074 21.3 8.8 59 169-228 14-72 (145)
332 1bpo_A Protein (clathrin); cla 25.2 4.2E+02 0.014 24.7 10.3 137 92-238 346-482 (494)
333 3hra_A Ankyrin repeat family p 24.9 1.3E+02 0.0044 23.6 5.7 13 223-235 80-92 (201)
334 1oxz_A ADP-ribosylation factor 24.7 2E+02 0.007 22.8 6.4 86 397-492 35-129 (186)
335 2w57_A Ferric uptake regulatio 24.5 2.3E+02 0.0078 21.4 7.6 35 157-191 32-66 (150)
336 3eu9_A Huntingtin-interacting 24.4 2.7E+02 0.0093 22.2 8.0 17 332-348 216-232 (240)
337 1mzb_A Ferric uptake regulatio 24.3 2.2E+02 0.0074 21.0 8.0 42 149-190 24-66 (136)
338 2f6m_A Suppressor protein STP2 24.3 1.3E+02 0.0046 18.9 4.2 44 110-154 5-48 (65)
339 2crb_A Nuclear receptor bindin 24.1 1.5E+02 0.0053 20.2 4.6 24 431-454 18-41 (97)
340 1wgl_A TOLL-interacting protei 23.9 1.2E+02 0.0042 18.7 3.9 22 476-497 36-57 (59)
341 3jxi_A Vanilloid receptor-rela 23.7 42 0.0014 28.1 2.6 54 261-314 10-72 (260)
342 2keb_A DNA polymerase subunit 23.7 1.9E+02 0.0064 20.1 6.4 55 412-468 28-87 (101)
343 2o03_A Probable zinc uptake re 23.3 2.2E+02 0.0074 20.8 6.2 40 150-189 18-57 (131)
344 2o03_A Probable zinc uptake re 22.9 1.6E+02 0.0056 21.5 5.4 48 112-159 15-62 (131)
345 3kea_A K1L; tropism, ANK repea 21.7 3.5E+02 0.012 22.8 8.2 15 117-131 38-52 (285)
346 3mwm_A ZUR, putative metal upt 21.2 1.5E+02 0.0052 22.0 5.0 38 119-156 25-62 (139)
347 3d5l_A Regulatory protein RECX 20.5 3.5E+02 0.012 22.1 9.6 50 374-425 92-142 (221)
348 3ltm_A Alpha-REP4; protein eng 20.4 3.2E+02 0.011 21.5 21.0 17 211-227 94-110 (211)
349 3mwm_A ZUR, putative metal upt 20.3 2E+02 0.0068 21.3 5.5 44 148-191 19-62 (139)
350 4b4t_O 26S proteasome regulato 20.1 4.9E+02 0.017 23.5 10.1 56 365-420 83-154 (393)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-37 Score=308.79 Aligned_cols=395 Identities=12% Similarity=0.001 Sum_probs=276.9
Q ss_pred CCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 81 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
+...|++++|+.+|+++.+..| +..++..++.+|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++
T Consensus 94 ~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 94 ALMQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHH
Confidence 3456788888888888876654 4467777888888888888888888877543 5677788888888888888888
Q ss_pred HHHHHHHHHhC---------------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-----------------
Q 044044 161 GFVVLGRILRS---------------CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFAC----------------- 208 (508)
Q Consensus 161 a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------- 208 (508)
|.++|+++... +.+.+..+|+.++.+|.+.|++++|+++|+++...+.
T Consensus 169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 248 (597)
T 2xpi_A 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA 248 (597)
T ss_dssp HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCH
T ss_pred HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccc
Confidence 88888743211 1233467788888888888888888888877765431
Q ss_pred -----------------------------------------------------CCCHhhHHHHHHHHHhcCChHHHHHHH
Q 044044 209 -----------------------------------------------------EPDVFTYNTLINGLCRTGHTIVALNLF 235 (508)
Q Consensus 209 -----------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 235 (508)
+++..+|+.++.+|.+.|++++|+++|
T Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp HHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 145555666666666666666666666
Q ss_pred HHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 236 EEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 315 (508)
+++...+ +.+..++..++.++.+.|++++|.++++++.+. .+.+..+++.++..|.+.|++++|.++|+++.
T Consensus 329 ~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 329 TKILEID-------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHC-------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6666543 335556666666666666666666666666643 23356677777777777777777777777776
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 044044 316 DQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVS 395 (508)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (508)
+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+
T Consensus 401 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 477 (597)
T 2xpi_A 401 TMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLL 477 (597)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 642 3356677777777777777777777777777653 3356677777777777777777777777776654 446777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSK----GIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNF 469 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 469 (508)
|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++++++.+.+ +.+..+|..+
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 556 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 777777777777777777777777665 44565 5677777777777777777777777777653 3367777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 044044 470 IDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 470 i~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
..+|.+.|++++|.+.|+++.+.
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 77777777777777777777754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-35 Score=298.09 Aligned_cols=408 Identities=9% Similarity=-0.052 Sum_probs=322.3
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
|.+..+...++.. |. ++...|+.++..+.+.|++++|+.+|+++.+. .|+..++..++.+|.+.|++++|..+
T Consensus 67 ~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 67 GSFLKERNAQNTD----SL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccCCCCCccccc----hH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 3444455555432 32 47788999999999999999999999999864 67889999999999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc---------------CCCCCHhhHHHHHHHHHhcCChH
Q 044044 165 LGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF---------------ACEPDVFTYNTLINGLCRTGHTI 229 (508)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~ 229 (508)
++++... +++..+++.++.+|.+.|++++|+++|+++... +.+.+..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9988654 678999999999999999999999999953221 22335889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC---------------------------------------------------------------
Q 044044 230 VALNLFEEMANGNGEFG--------------------------------------------------------------- 246 (508)
Q Consensus 230 ~A~~~~~~~~~~~~~~~--------------------------------------------------------------- 246 (508)
+|+++|+++...++...
T Consensus 218 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999999987653210
Q ss_pred -ccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 044044 247 -VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVT 325 (508)
Q Consensus 247 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 325 (508)
...+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 0113677788888888888888888888888887654 3367778888888888888888888888887653 556778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK 405 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (508)
+..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 8888888888999999999998888753 3357788888888889999999999998888775 5577888888888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCH
Q 044044 406 NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN----HVAAD--TYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~ 479 (508)
.|++++|+++|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++
T Consensus 454 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 9999999999988887643 36788888889999999999999999888765 55676 67888899999999999
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHcc
Q 044044 480 LEALELFRAIRDSKYELNIVSYNCLIDG 507 (508)
Q Consensus 480 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 507 (508)
++|.+.|+++.+.+ ..+..+|..+..+
T Consensus 533 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 533 DAAIDALNQGLLLS-TNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 99999998888754 3366777666543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-30 Score=246.46 Aligned_cols=378 Identities=15% Similarity=0.045 Sum_probs=285.2
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHG 161 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 161 (508)
+..|++++|+..++.+.+..|. +...+..+...+...|++++|...++...+.. +.+...|..+...+.+.|++++|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3457888888888888888776 67777788888888888888888888887753 55777888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 162 FVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
...|+++.+.. +.+...|..+..++.+.|++++|++.|+++.... +.+...+..+...+...|++++|++.|+++...
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88888887753 3355678888888888888888888888887764 334556777778888888888888888888775
Q ss_pred CCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044044 242 NGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQP 321 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 321 (508)
. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|+..+++..... +.
T Consensus 165 ~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 235 (388)
T 1w3b_A 165 Q-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp C-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 4 3456778888888888888888888888887753 2356677777788888888888888888777653 33
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044044 322 DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLIN 401 (508)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (508)
+..++..+..++.+.|++++|...++++++.+ +.+..++..+...+.+.|++++|.+.++++.+.. +.+..+|+.++.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 56677777888888888888888888887763 2246677778888888888888888888877764 567777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044044 402 WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 477 (508)
.+...|++++|+..++++.+.. +.+..++..++.++.+.|++++|++.++++.+.. +.+...|..+...+...|
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 8888888888888888887753 3356677788888888888888888888887652 234556666666665544
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.7e-29 Score=238.17 Aligned_cols=367 Identities=14% Similarity=0.048 Sum_probs=323.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 113 LFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 192 (508)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (508)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3566788999999999999998763 4466777788888999999999999999988764 5678899999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHH
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKA 272 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 272 (508)
+++|+..|+++.... +.+..+|..+..++.+.|++++|++.|+++.... +.+...+..+...+...|++++|
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-------PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHH
Confidence 999999999998874 4456789999999999999999999999999864 34566788899999999999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 044044 273 KELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWR 352 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 352 (508)
.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...++++.+.
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998863 3357889999999999999999999999999874 446778899999999999999999999999877
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044044 353 GVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYN 432 (508)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 432 (508)
. +.+..++..+...|.+.|++++|.+.++++.+.+ +.+..+|..++.++.+.|++++|+..|+++.+.. +.+..++.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 4 2358889999999999999999999999999875 5578899999999999999999999999999874 45788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
.++..+...|++++|++.++++.+. .+.+...+..+..+|.+.|++++|.+.|+++.+ +.|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 9999999999999999999999986 344688999999999999999999999999986 4554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.9e-31 Score=256.90 Aligned_cols=206 Identities=17% Similarity=0.207 Sum_probs=155.3
Q ss_pred HHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC---------hh
Q 044044 271 KAKELFLKMKDENINPDV-VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK---------MD 340 (508)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 340 (508)
.+..+.+++.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345555666666655443 35777888888888888888888888888888888888888888877654 56
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 341 KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKS 476 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 476 (508)
+.|+.||..||+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888777654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=5.8e-31 Score=253.58 Aligned_cols=188 Identities=14% Similarity=0.171 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCCHH
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND---------WNEAKRLFIEMMDQGVQPDVV 324 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 324 (508)
..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35677788888888888888888888888888888888888888876554 677888888888888888888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
||+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 441 (508)
+.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888777653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=3.4e-25 Score=214.35 Aligned_cols=349 Identities=12% Similarity=0.042 Sum_probs=275.6
Q ss_pred HHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHH
Q 044044 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGR 167 (508)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 167 (508)
..+...+.+++..+|. +...+..++..+.+.|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+++
T Consensus 9 ~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA--DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------------CH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455566666666665 88899999999999999999999999998763 55788999999999999999999999999
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCH---hhHHHH------------HHHHHhcCChHHHH
Q 044044 168 ILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDV---FTYNTL------------INGLCRTGHTIVAL 232 (508)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~ 232 (508)
+++.+ +.+..++..++.+|.+.|++++|...|+++.... +.+. ..+..+ ...+...|++++|+
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98875 4467889999999999999999999999998764 2234 555555 44588999999999
Q ss_pred HHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 044044 233 NLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFI 312 (508)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 312 (508)
..|+++.... +.+...+..++.+|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|+..|+
T Consensus 164 ~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 164 AFLDKILEVC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999864 5578899999999999999999999999998753 3468899999999999999999999999
Q ss_pred HHHHcCCCCCHHhHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHcCCCHHH
Q 044044 313 EMMDQGVQPDVVTFSVI------------MDELCKNGKMDKASRLLELMIWRGVNPN----TYTYNTLIDGYCLTDKIDH 376 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 376 (508)
++.+.. +.+...+..+ ...+.+.|++++|...++.+.+.... + ...+..+..++.+.|++++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHH
Confidence 998763 3344445444 78889999999999999999876322 2 3478888899999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH------------HHhcC--
Q 044044 377 ARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG------------LFEIH-- 442 (508)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-- 442 (508)
|...++++.+.. +.+...|..++.+|...|++++|...++++.+..+. +...+..+..+ |...|
T Consensus 314 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 314 AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 999999988764 557889999999999999999999999999986332 45566665533 33333
Q ss_pred ---CHHHHHHHHHH
Q 044044 443 ---QVERALKLFDE 453 (508)
Q Consensus 443 ---~~~~a~~~~~~ 453 (508)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 45566766665
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.4e-25 Score=217.34 Aligned_cols=409 Identities=12% Similarity=0.006 Sum_probs=323.3
Q ss_pred hhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 74 CKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
....|..++..|++++|+..|+++++..| +..+|..++.++.+.|++++|+..++++.+.+ +.+...+..+..++.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34556778889999999999999999874 67899999999999999999999999998864 556788999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHh------------------------------
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKH------------------------------ 203 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------------ 203 (508)
..|++++|...|+++...+. ++......++..+........+.+.+..+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988753 34444444444333322222222222111
Q ss_pred -----hhcCC---------CCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHh-----C--CCCCCccccCCHhHHHHH
Q 044044 204 -----RVFAC---------EPDVFTYNTLINGLCR---TGHTIVALNLFEEMAN-----G--NGEFGVVCKPNTVTYNTI 259 (508)
Q Consensus 204 -----~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~l 259 (508)
..... +.+...+......+.. .|++++|+.+|+++.. . .+......+.+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 00000 1124455555555554 8999999999999988 3 110000002346688889
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 044044 260 IDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKM 339 (508)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 339 (508)
+..+...|++++|...|+++.+... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999988643 38888999999999999999999999998864 44667888999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 340 DKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998753 367788999999999999999999999998864 556788999999999999999999999999
Q ss_pred HHCCCC-CC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 420 LSKGIK-PT----VVTYNTLFLGLFE---IHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 420 ~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+.... ++ ...+..+..++.. .|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 875222 11 3388999999999 999999999999999863 34678889999999999999999999999997
Q ss_pred cC
Q 044044 492 SK 493 (508)
Q Consensus 492 ~g 493 (508)
..
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 53
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.4e-25 Score=215.35 Aligned_cols=367 Identities=9% Similarity=-0.050 Sum_probs=289.2
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG 156 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 156 (508)
.|..+...|++++|+..|+.+++.+|. +..+|..++.++...|++++|+..|+++.+.+ +++......++..+....
T Consensus 45 la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 121 (514)
T 2gw1_A 45 LSACYVSVGDLKKVVEMSTKALELKPD--YSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQ 121 (514)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccChH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHH
Confidence 345567789999999999999999887 88899999999999999999999999999875 334444444443333222
Q ss_pred CcchHHHHH-----------------------------------HHHHhCCC---------CCCHHhHHHHHHHHHh---
Q 044044 157 RVSHGFVVL-----------------------------------GRILRSCF---------TPNAVTFTSLIKGLCA--- 189 (508)
Q Consensus 157 ~~~~a~~~~-----------------------------------~~~~~~~~---------~~~~~~~~~l~~~~~~--- 189 (508)
....+.+.+ ..+..... +.+...+..+...+..
T Consensus 122 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (514)
T 2gw1_A 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS 201 (514)
T ss_dssp HHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh
Confidence 111111111 11111000 1124444555554554
Q ss_pred cCCHHHHHHHHHHhhh-----cCC--------CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH
Q 044044 190 ESRIMEAAALFTKHRV-----FAC--------EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY 256 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (508)
.|++++|+..|+++.. ... +.+..++..+...+...|++++|+..|+++.... |+...+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~ 273 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--------PRVNSY 273 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--------CCHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------ccHHHH
Confidence 8999999999999887 311 2235678889999999999999999999999865 338889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKN 336 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (508)
..++.++...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 999999999999999999999998863 3467789999999999999999999999999874 34567888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCC
Q 044044 337 GKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCM-HD----VVSYNTLINWYCK---NKD 408 (508)
Q Consensus 337 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~ 408 (508)
|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... ++ ...|..++..+.. .|+
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999998874 335778899999999999999999999998765311 11 3488899999999 999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
+++|...++++.+... .+..++..+..++...|++++|.+.|+++.+..
T Consensus 431 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 431 FIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999999998643 367788999999999999999999999999863
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=2.6e-24 Score=213.15 Aligned_cols=398 Identities=11% Similarity=0.031 Sum_probs=311.8
Q ss_pred hccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 75 KSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK 154 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (508)
...|..+...|++++|+..|+++++..|. +..+|..++.++.+.|++++|++.|+++.+.+ +.+...+..+..++..
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 34455566788999999999999999987 88999999999999999999999999998875 5578889999999999
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC------CCCCHh---------------
Q 044044 155 MGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA------CEPDVF--------------- 213 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~--------------- 213 (508)
.|++++|...++ ..... |+ .....+..+...+...+|...++++.... ..|+..
T Consensus 106 ~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 999999999996 44332 22 12222334455566677888888775431 011111
Q ss_pred ---------------hHHHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCccccCC-------HhHHHHHHHHH
Q 044044 214 ---------------TYNTLINGLCR--------TGHTIVALNLFEEMANGNGEFGVVCKPN-------TVTYNTIIDGL 263 (508)
Q Consensus 214 ---------------~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 263 (508)
....+...+.. .|++++|+.+|+++.... +.+ ..++..+...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-------TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-------CCcchhhHHHHHHHHHHHHHH
Confidence 22222222222 248899999999999865 223 23567777888
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 044044 264 CKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKAS 343 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 343 (508)
...|++++|...|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999886 4557888999999999999999999999998874 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 344 RLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG 423 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (508)
..++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 331 ~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999998753 357789999999999999999999999998875 5667889999999999999999999999988752
Q ss_pred C-----CCCHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 424 I-----KPTVVTYNTLFLGLFEI----------HQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 424 ~-----~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
. ......+..+..++... |++++|+..++++.+.. +.+...+..+..+|.+.|++++|.+.|++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1 11222345556777777 99999999999999863 34678899999999999999999999999
Q ss_pred HHHcC
Q 044044 489 IRDSK 493 (508)
Q Consensus 489 m~~~g 493 (508)
+.+..
T Consensus 488 al~~~ 492 (537)
T 3fp2_A 488 SAILA 492 (537)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98753
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=7.8e-24 Score=204.78 Aligned_cols=349 Identities=12% Similarity=0.036 Sum_probs=281.5
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 044044 126 VLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRV 205 (508)
Q Consensus 126 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 205 (508)
+...+.++.... +.+...+..+...+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|+..|+++..
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444432 5577889999999999999999999999998763 45788999999999999999999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH---hHHHHH------------HHHHHccCCHH
Q 044044 206 FACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT---VTYNTI------------IDGLCKEGFVD 270 (508)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~ 270 (508)
.+ +.+..++..++.+|...|++++|+..|+++.... +.+. ..+..+ ...+...|+++
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 75 4468899999999999999999999999999865 3334 555555 44588999999
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044044 271 KAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMI 350 (508)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 350 (508)
+|...|+++.+.. +.+...+..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998763 4477889999999999999999999999998763 4578899999999999999999999999999
Q ss_pred HcCCCCCHHhHHHH------------HHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 044044 351 WRGVNPNTYTYNTL------------IDGYCLTDKIDHARKLFVSMESNGCMHD----VVSYNTLINWYCKNKDVEEALS 414 (508)
Q Consensus 351 ~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 414 (508)
+... .+...+..+ +..+.+.|++++|...|+++.+.. +.+ ...|..++.++.+.|++++|+.
T Consensus 239 ~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 7632 245555544 788999999999999999998864 223 4578889999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----
Q 044044 415 LYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDG------------LCKSG----- 477 (508)
Q Consensus 415 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~------------~~~~g----- 477 (508)
.++++.+.. +.+..+|..++.+|...|++++|.+.++++.+.. +.+...+..+..+ |...|
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 999998863 3368899999999999999999999999999853 2356666666633 33344
Q ss_pred CHHHHHHHHHHHH
Q 044044 478 FVLEALELFRAIR 490 (508)
Q Consensus 478 ~~~~A~~~~~~m~ 490 (508)
+.+++.+.|+++.
T Consensus 395 ~~~~~~~~y~~~~ 407 (450)
T 2y4t_A 395 KKQEIIKAYRKLA 407 (450)
T ss_dssp CTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5677888888743
No 12
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=2.4e-19 Score=174.94 Aligned_cols=352 Identities=12% Similarity=0.058 Sum_probs=238.2
Q ss_pred CcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCCH
Q 044044 106 PVSSFNILFGCLAK----NKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK----MGRVSHGFVVLGRILRSCFTPNA 177 (508)
Q Consensus 106 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 177 (508)
+..++..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666666666666 677777777777777654 45566666666766 677777777777776654 45
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCccc
Q 044044 178 VTFTSLIKGLCA----ESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVC 249 (508)
Q Consensus 178 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 249 (508)
..+..|...|.. .+++++|+..|++....| +...+..+...|.. .+++++|+++|++..+.+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------- 181 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG------- 181 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------
Confidence 566666666666 667777777777776654 55666666666665 667777777777776643
Q ss_pred cCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCC
Q 044044 250 KPNTVTYNTIIDGLCK----EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQP 321 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 321 (508)
+...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.+
T Consensus 182 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 182 --NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred --CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 45666667766666 677777777777776654 45566666666664 667777777777776654
Q ss_pred CHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCC
Q 044044 322 DVVTFSVIMDELCK----NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT-----DKIDHARKLFVSMESNGCMHD 392 (508)
Q Consensus 322 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~ 392 (508)
+...+..+...+.. .++.++|...|+...+.| +...+..+...|... ++.++|...+++..+.+ +
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~ 327 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---D 327 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---C
Confidence 34455556666666 677777777777776553 445566666666665 67777777777777654 4
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 044044 393 VVSYNTLINWYCKNK---DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERALKLFDEMRRNHVAADTYT 465 (508)
Q Consensus 393 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 465 (508)
...+..+...|...| ++++|+++|++..+.+ +...+..|...|.. .+++++|.++|++..+.+ +...
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a 401 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAA 401 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHH
Confidence 556666666666655 6777777777777653 55666677777766 677777777777777654 4566
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 044044 466 YNNFIDGLCK----SGFVLEALELFRAIRDSK 493 (508)
Q Consensus 466 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g 493 (508)
+..|...|.+ .+++++|...|++..+.+
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 6667777766 677777777777777655
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=7.9e-21 Score=177.60 Aligned_cols=302 Identities=13% Similarity=0.049 Sum_probs=179.1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG 186 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (508)
...+..++..+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3455666666777777777777777776643 3456666667777777777777777777766653 3355666777777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCC--CCHhhHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC
Q 044044 187 LCAESRIMEAAALFTKHRVFACE--PDVFTYNTL------------INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN 252 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 252 (508)
+...|++++|...|+++...... .+...+..+ ...+...|++++|+++++++.... +.+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~ 153 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-------VWD 153 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCc
Confidence 77777777777777776655210 133333333 567778888888888888887764 456
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH---
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVI--- 329 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 329 (508)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 6778888888888888888888888887753 3466777778888888888888888888877653 2223322211
Q ss_pred ---------HHHHHhcCChhHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044044 330 ---------MDELCKNGKMDKASRLLELMIWRGVNPNT----YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSY 396 (508)
Q Consensus 330 ---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (508)
...+.+.|++++|...++.+.+.... +. ..+..+..++...|++++|...++++.+.. +.+...|
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 33344444444444444444443211 11 112223334444444444444444444332 2234444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
..++.++...|++++|...|+++.+
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444444444444444444
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2e-20 Score=174.85 Aligned_cols=303 Identities=11% Similarity=0.025 Sum_probs=206.6
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHH
Q 044044 141 DIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLIN 220 (508)
Q Consensus 141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 220 (508)
|...+..+...+...|++++|...++++++.. +.+..++..+...+...|++++|+..|+++.... +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678888899999999999999999998864 4568899999999999999999999999998874 446788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCcccc---CCHhHHHHH------------HHHHHccCCHHHHHHHHHHHhhCCCC
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCK---PNTVTYNTI------------IDGLCKEGFVDKAKELFLKMKDENIN 285 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~ 285 (508)
.+...|++++|+..|+++.... + .+...+..+ ...+...|++++|.+.++++.+.. +
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 151 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-------PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-V 151 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHcCChHHHHHHHHHHHhcC-------CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 9999999999999999999864 2 244455544 466667777777777777776642 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHH--
Q 044044 286 PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNT-- 363 (508)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 363 (508)
.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~ 229 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYK 229 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHH
Confidence 355666667777777777777777777776653 445566666777777777777777777776655321 2222221
Q ss_pred ----------HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044044 364 ----------LIDGYCLTDKIDHARKLFVSMESNGCMHDVV----SYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVV 429 (508)
Q Consensus 364 ----------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (508)
+...+.+.|++++|...++++.+.. +.+.. .+..+..++...|++++|+..++++.+.. +.+..
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 307 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHH
Confidence 1344555666666666666655543 12221 23334555556666666666666655542 12455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
++..+..++...|++++|.+.|+++.+.
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555666666666666666666666554
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=4.4e-21 Score=189.86 Aligned_cols=384 Identities=11% Similarity=0.074 Sum_probs=290.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG 186 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (508)
...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.+.|++++|++.++++++.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888899999999999999999999874 5678899999999999999999999999998875 4578889999999
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHh------------
Q 044044 187 LCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV------------ 254 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~------------ 254 (508)
+...|++++|+..|+.+ .. .|+. ....+..+...+...+|...++.+....+.......|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999743 22 2221 2223445555666788888888886642111110112211
Q ss_pred ------------------HHHHHHHHHHc--------cCCHHHHHHHHHHHhhCCCCCC-------hhhHHHHHHHHHhc
Q 044044 255 ------------------TYNTIIDGLCK--------EGFVDKAKELFLKMKDENINPD-------VVTYTSVIRGFCYA 301 (508)
Q Consensus 255 ------------------~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 301 (508)
....+...+.. .|++++|..+|+++.+.... + ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 22222222222 24789999999999876322 2 23466677788889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 044044 302 NDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLF 381 (508)
Q Consensus 302 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (508)
|++++|...++++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999986 4557888889999999999999999999999875 336888999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 044044 382 VSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH--- 458 (508)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 458 (508)
+++.+.. +.+...|..+..++...|++++|+..++++.+... .+...+..+...+...|++++|++.++++.+..
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998875 45678899999999999999999999999998743 356788999999999999999999999987642
Q ss_pred --CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCccCHHHHHHH
Q 044044 459 --VAADTYTYNNFIDGLCKS----------GFVLEALELFRAIRDSKYELNIVSYNCL 504 (508)
Q Consensus 459 --~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l 504 (508)
.......+..+...+.+. |++++|...|+++.+.. ..+...|..+
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 468 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGL 468 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 112233345556778888 99999999999998753 2233444443
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=5.6e-19 Score=172.32 Aligned_cols=340 Identities=12% Similarity=0.044 Sum_probs=294.6
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAK----NKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK---- 154 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 154 (508)
..++++.|+..|+.+.+.+ +..++..|...|.. .+++++|+..|++..+.| +...+..+...|..
T Consensus 55 ~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 55 TTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 4689999999999998863 67788999999998 999999999999999875 66777788888888
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh----cC
Q 044044 155 MGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA----ESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR----TG 226 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 226 (508)
.+++++|...|++..+.| +...+..|...|.. .++.++|++.|++..+.| +...+..+...|.. .+
T Consensus 128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 789999999999998875 67788888888887 789999999999998864 78888999999988 89
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--
Q 044044 227 HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK----EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY-- 300 (508)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 300 (508)
++++|+++|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|..
T Consensus 202 ~~~~A~~~~~~a~~~~---------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL 269 (490)
T ss_dssp CHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence 9999999999998765 56778888888886 789999999999998864 56677777777877
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCC-
Q 044044 301 --ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKN-----GKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTD- 372 (508)
Q Consensus 301 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 372 (508)
.+++++|+.+|++..+.| +...+..+...|... +++++|...++...+.+ +...+..+...|...|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 899999999999998765 566777788888887 89999999999999875 5567778888887766
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cC
Q 044044 373 --KIDHARKLFVSMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IH 442 (508)
Q Consensus 373 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 442 (508)
+.++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..|...|.. .+
T Consensus 344 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCC
Confidence 7899999999999874 78889999999998 899999999999999975 57788889999988 89
Q ss_pred CHHHHHHHHHHHHHCCC
Q 044044 443 QVERALKLFDEMRRNHV 459 (508)
Q Consensus 443 ~~~~a~~~~~~~~~~~~ 459 (508)
+.++|..+|++..+.+.
T Consensus 418 d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 99999999999998763
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.4e-20 Score=170.46 Aligned_cols=293 Identities=13% Similarity=0.005 Sum_probs=212.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH
Q 044044 174 TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT 253 (508)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (508)
+.+...+..++..+...|++++|+++|+++.... +.+...+..++..+...|++++|..+++++.... +.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 90 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------PSNP 90 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTST
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCH
Confidence 4455666677777777788888888888777654 3355666667777777888888888888877754 3456
Q ss_pred hHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 044044 254 VTYNTIIDGLCKEG-FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDE 332 (508)
Q Consensus 254 ~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (508)
..|..+...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 168 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 67777777788888 7888888888877653 2346677777778888888888888888877753 2344556667777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHH
Q 044044 333 LCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG--------CMHDVVSYNTLINWYC 404 (508)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 404 (508)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+.+...+..++.++.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 888888888888888887663 3356777778888888888888888887776531 1334567888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGL-CKSGFV 479 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~ 479 (508)
..|++++|+..++++.+.... +...+..+..++...|++++|.+.++++.+.. +.+...+..+..++ ...|+.
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 888888888888888876432 56778888888888888888888888887753 33666777777766 455554
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.3e-20 Score=170.48 Aligned_cols=286 Identities=11% Similarity=-0.002 Sum_probs=150.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh
Q 044044 145 HSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR 224 (508)
Q Consensus 145 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (508)
+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|..+++++.... +.+..+|..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 2223333444444445555555555555544432 2234445555555555
Q ss_pred cC-ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 044044 225 TG-HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND 303 (508)
Q Consensus 225 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (508)
.| ++++|+..|+++.... +.+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 55 5555555555555443 2234445555555555555555555555554432 1133444445555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHhHHHHHHHHHcCCCHH
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG--------VNPNTYTYNTLIDGYCLTDKID 375 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 375 (508)
+++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. .+....++..+...+...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 555555555555442 3344555555555666666666666665555431 1223456666666666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCC
Q 044044 376 HARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL-FEIHQ 443 (508)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~ 443 (508)
+|...++++.+.. +.+...|..+..++...|++++|...++++.+... .+...+..+..++ ...|+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCc
Confidence 7777776666553 34556666677777777777777777776666432 2455555565555 34444
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=6.1e-18 Score=166.72 Aligned_cols=397 Identities=13% Similarity=0.066 Sum_probs=295.1
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcCCcchHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINC-FCKMGRVSHGF 162 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~ 162 (508)
.|+++.|+.+|+.+++..|. +...|..++..+.+.|++++|..+|+++++. .|+...|...+.. ....|+.+.|.
T Consensus 25 ~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred hCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHH
Confidence 47899999999999999987 8899999999999999999999999999986 4688888877753 34568888877
Q ss_pred H----HHHHHHh-CCCC-CCHHhHHHHHHHHHh---------cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHH-----
Q 044044 163 V----VLGRILR-SCFT-PNAVTFTSLIKGLCA---------ESRIMEAAALFTKHRVFACEPDVFTYNTLINGL----- 222 (508)
Q Consensus 163 ~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----- 222 (508)
+ +|++.+. .|.. .+...|...+....+ .|++++|..+|++............|.......
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 6 7777654 2443 356778887776654 689999999999988731111123343322211
Q ss_pred --------HhcCChHHHHHHHHHHH------hCCCCCCccccCC--------HhHHHHHHHHHHcc----CCH----HHH
Q 044044 223 --------CRTGHTIVALNLFEEMA------NGNGEFGVVCKPN--------TVTYNTIIDGLCKE----GFV----DKA 272 (508)
Q Consensus 223 --------~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~~--------~~~~~~l~~~~~~~----g~~----~~a 272 (508)
...+++..|..+++.+. +... ..++|+ ...|...+...... ++. +.+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~---~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA---PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS---CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc---ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 13456777887777632 2110 002333 24566555443322 232 477
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 044044 273 KELFLKMKDENINPDVVTYTSVIRGFCY-------ANDWN-------EAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK 338 (508)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (508)
..+|+++... .+.+...|...+..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|+
T Consensus 258 ~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 258 MFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 8899998875 24467888888887775 68877 899999999863234567889999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 044044 339 MDKASRLLELMIWRGVNPN--TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW-YCKNKDVEEALSL 415 (508)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 415 (508)
+++|..+|+.+++. .|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +...|+.++|..+
T Consensus 337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 99999999999986 443 3588888999999999999999999998863 2333334333322 3468999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 416 YSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHV-AA--DTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 416 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
|++.++..+ .+...|..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 414 ~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 414 FELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999988632 3678899999999999999999999999998632 22 2458888888889999999999999998753
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=4.2e-18 Score=167.88 Aligned_cols=394 Identities=12% Similarity=0.054 Sum_probs=289.4
Q ss_pred HHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 044044 94 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCF 173 (508)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 173 (508)
|+..++.+|. +..+|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~P~--~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHCTT--CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhCCC--CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 6677788887 8999999998 47899999999999999986 36678889999999999999999999999999874
Q ss_pred CCCHHhHHHHHHHH-HhcCCHHHHHH----HHHHhhhc-CCC-CCHhhHHHHHHHHHh---------cCChHHHHHHHHH
Q 044044 174 TPNAVTFTSLIKGL-CAESRIMEAAA----LFTKHRVF-ACE-PDVFTYNTLINGLCR---------TGHTIVALNLFEE 237 (508)
Q Consensus 174 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~ 237 (508)
|+...|..++... ...|+.++|.+ +|++.... |.. .+...|...+..... .|++++|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 5777888777533 35577777665 77766543 433 346678877776654 6899999999999
Q ss_pred HHhCCCCCCccccCCHhHHHHHHHHH-------------HccCCHHHHHHHHHHH------hhCC---CCCC--------
Q 044044 238 MANGNGEFGVVCKPNTVTYNTIIDGL-------------CKEGFVDKAKELFLKM------KDEN---INPD-------- 287 (508)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~a~~~~~~~------~~~~---~~~~-------- 287 (508)
..... .......|....... .+.++++.|..++.+. .+.. ++|+
T Consensus 156 al~~P------~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 156 GCVNP------MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HTTSC------CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHhch------hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 98732 112233444332211 1345677888777663 2221 2333
Q ss_pred hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------cCChh-------HHHHH
Q 044044 288 VVTYTSVIRGFCYA----NDW----NEAKRLFIEMMDQGVQPDVVTFSVIMDELCK-------NGKMD-------KASRL 345 (508)
Q Consensus 288 ~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~ 345 (508)
...|...+...... ++. +.+..+|++.+.. .+.+...|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 23455544332221 232 4778899998876 34567788888887775 79987 89999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 044044 346 LELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDV-VSYNTLINWYCKNKDVEEALSLYSEMLSKGI 424 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (508)
+++.++.-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|.++|++..+...
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9999863223358899999999999999999999999999863 2243 5899999999999999999999999998632
Q ss_pred CCCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CccC--HHH
Q 044044 425 KPTVVTYNTLFLG-LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSK-YELN--IVS 500 (508)
Q Consensus 425 ~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~ 500 (508)
.+...|...+.. +...|+.++|.++|++..+.. +.+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...
T Consensus 388 -~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 388 -TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp -CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred -CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 233333333322 346899999999999998763 3468899999999999999999999999999763 3343 345
Q ss_pred HHH
Q 044044 501 YNC 503 (508)
Q Consensus 501 ~~~ 503 (508)
|..
T Consensus 466 w~~ 468 (530)
T 2ooe_A 466 WAR 468 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=6.2e-20 Score=172.31 Aligned_cols=266 Identities=12% Similarity=0.010 Sum_probs=179.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 293 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (508)
.+..+...+.+.|++++|+..|+++.... +.+...+..++.++...|++++|.+.|+++.+.. +.+..++..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 137 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMA 137 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 34445555555555555555555555442 2344455555555555555555555555554432 223444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH---------------HHHHHHHhcCChhHHHHHHHHHHHcCCCC-C
Q 044044 294 VIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFS---------------VIMDELCKNGKMDKASRLLELMIWRGVNP-N 357 (508)
Q Consensus 294 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 357 (508)
+...+...|++++|...++++..... .+...+. ..+..+...|++++|...++.+.+..... +
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 216 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID 216 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCccc
Confidence 55555555555555555555554321 1111111 02333348889999999999988764322 4
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
..++..+...|...|++++|...++++.+.. +.+...|..++..+...|++++|+..++++.+.. +.+..++..+..+
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 294 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 7788888999999999999999999988764 5578889999999999999999999999988864 3367788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 438 LFEIHQVERALKLFDEMRRNHVA----------ADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+...|++++|...++++.+.... .....|..+..+|...|++++|..++++.+
T Consensus 295 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 295 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999999999988764211 126789999999999999999998876443
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=5.4e-20 Score=172.75 Aligned_cols=308 Identities=11% Similarity=0.005 Sum_probs=177.5
Q ss_pred CCCCCCChHHHHH-HHHHhHHcCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 80 GDINLITPNEALC-IFDYMLRMHPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG 156 (508)
Q Consensus 80 ~~~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 156 (508)
.+.-.|++++|+. .|+++++..|..| +...+..++..+.+.|++++|+..|+++.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4445678888988 8888877766533 45678888889999999999999999998864 557778888888899999
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFE 236 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 236 (508)
++++|...++++.+.. +.+..++..+...+...|++++|+..++++.... +.+...+..+... .
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h-------
Confidence 9999999999888764 4467788888888888899999999998888764 2222222211000 0
Q ss_pred HHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 237 EMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINP-DVVTYTSVIRGFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 315 (508)
.. ..+ ...+..+...+ ..|++++|...|+++.+..... +..++..+...+...|++++|+..++++.
T Consensus 177 ---~~-------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 177 ---GG-------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp --------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hh-------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 000 00111111122 4455555555555554432110 24445555555555555555555555555
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC------
Q 044044 316 DQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGC------ 389 (508)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 389 (508)
+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|.+.|++++|...++++.+...
T Consensus 245 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 322 (368)
T 1fch_A 245 SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 432 2234455555555555556666655555555442 22345555566666666666666666655544320
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 390 ----MHDVVSYNTLINWYCKNKDVEEALSLYSE 418 (508)
Q Consensus 390 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (508)
+....+|..+..+|...|++++|..++++
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 11155666666666667776666666553
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=8.9e-20 Score=171.08 Aligned_cols=266 Identities=9% Similarity=-0.018 Sum_probs=197.3
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhh
Q 044044 211 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVT 290 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (508)
+...+..+...+.+.|++++|+.+|+++.... +.+...|..++.++...|++++|.+.|+++.+.. +.+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 34457777777777777777777777777654 4456677777777777777777777777776652 235667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD-----------VVTFSVIMDELCKNGKMDKASRLLELMIWRGVN-PNT 358 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 358 (508)
+..+...|...|++++|+..++++.+.. |+ ...+..+...+...|++++|...++++.+.... .+.
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 7777777777788888887777776642 21 123334577888889999999999998887432 157
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
.++..+...|...|++++|...++++.+.. +.+..+|..++.+|...|++++|+..|+++++... .+..++..+..+|
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHH
Confidence 788889999999999999999999988764 56788899999999999999999999999988642 2577889999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 439 FEIHQVERALKLFDEMRRNHVA-----------ADTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
...|++++|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999988764211 1367889999999999999988887655
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=1.4e-19 Score=166.21 Aligned_cols=282 Identities=12% Similarity=0.086 Sum_probs=135.1
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
..|++++|.++++++ ++..+|..++.++.+.|++++|++.|.+. +|...|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 446799999999988 23459999999999999999999999653 57779999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988777664 4567889999999999999999998885 467789999999999999999999999975
Q ss_pred CCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044044 243 GEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD 322 (508)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 322 (508)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..+
T Consensus 149 -----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 149 -----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp -----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred -----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 36899999999999999999999998 27899999999999999999996665542 234
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCCC------CHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT--DKIDHARKLFVSMESNGCMH------DVV 394 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~ 394 (508)
+.-...++..|.+.|.+++|..+++..+... +-....|+.+..+|++- +++.+..+.|..- .+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHH
Confidence 4445578899999999999999999998654 44577888887777764 3444444444321 12222 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSL 415 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~ 415 (508)
.|..++..|.+.++++.|...
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHH
Confidence 689999999999999998874
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.2e-17 Score=162.48 Aligned_cols=374 Identities=11% Similarity=-0.045 Sum_probs=253.0
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhC-----
Q 044044 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA--------GLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRS----- 171 (508)
Q Consensus 105 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 171 (508)
.....||.+..++...|++++|++.|++..+. ..+....+|..+..+|...|++++|...++++.+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 45678999999999999999999999987542 11234678999999999999999999999887652
Q ss_pred C--CCCCHHhHHHHHHHHHhc--CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHH---HHhcCChHHHHHHHHHHHhCCCC
Q 044044 172 C--FTPNAVTFTSLIKGLCAE--SRIMEAAALFTKHRVFACEPDVFTYNTLING---LCRTGHTIVALNLFEEMANGNGE 244 (508)
Q Consensus 172 ~--~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~ 244 (508)
+ ......++..+..++... +++++|+..|++..... +.+...+..+..+ +...++.++|++.+++....+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--
Confidence 1 112345666666555544 57999999999998874 3355566555554 345688899999999988864
Q ss_pred CCccccCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 245 FGVVCKPNTVTYNTIIDGLCK----EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
+.+...+..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|+..+++..+.. +
T Consensus 206 -----p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 278 (472)
T 4g1t_A 206 -----PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-P 278 (472)
T ss_dssp -----SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred -----CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-C
Confidence 3456666666655544 467889999999988763 3467788899999999999999999999998863 4
Q ss_pred CCHHhHHHHHHHHHhc-------------------CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 044044 321 PDVVTFSVIMDELCKN-------------------GKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLF 381 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (508)
.+..++..+..+|... +..+.|...++.+.+.. +.+...+..+...|...|++++|.+.|
T Consensus 279 ~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 4566666666555332 23567778888877664 235667888999999999999999999
Q ss_pred HHHHhCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 382 VSMESNGCMHDV--VSYNTLIN-WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 382 ~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
+++.+....+.. ..+..+.. .....|++++|+..|++.++. .|+..... +....+.+++++..+.+
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKN 426 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhC
Confidence 999887532221 12233332 345789999999999999986 34432222 22344556666666553
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CccCHHHH
Q 044044 459 VAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSK-YELNIVSY 501 (508)
Q Consensus 459 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 501 (508)
+.+..+|..+..+|...|++++|++.|++.++.| ..|+..+|
T Consensus 427 -p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 427 -GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp -C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 4477889999999999999999999999999765 34665554
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=7.7e-19 Score=164.66 Aligned_cols=268 Identities=12% Similarity=-0.042 Sum_probs=200.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH
Q 044044 176 NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT 255 (508)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (508)
+...+..+...+.+.|++++|+..|+++.... +.+..+|..+...+...|++++|+..|+++.... +.+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHH
Confidence 34456777777777788888888887777664 4466777778888888888888888888877754 345677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHh
Q 044044 256 YNTIIDGLCKEGFVDKAKELFLKMKDENIN---------PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PDVVT 325 (508)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~ 325 (508)
+..++.+|...|++++|.+.|+++.+.... .....+..+...+...|++++|+..++++.+.... .+..+
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 777888888888888888888777654210 01223344577888899999999999999886421 15778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK 405 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (508)
+..+...+...|++++|...++++++.. +.+..++..+..+|...|++++|...|+++.+.. +.+..+|..++.+|..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 8889999999999999999999998874 3368889999999999999999999999988874 5568889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCC-----------CCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 406 NKDVEEALSLYSEMLSKGIK-----------PTVVTYNTLFLGLFEIHQVERALKLFDE 453 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (508)
.|++++|...|+++.+.... .+..+|..+..++...|+.+.+.++.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998875211 1357789999999999999998887754
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=1.4e-18 Score=160.03 Aligned_cols=266 Identities=12% Similarity=-0.029 Sum_probs=194.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHH
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 292 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (508)
..+..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 93 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHA 93 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHH
Confidence 445566666666777777777777766653 3355666666677777777777777777766542 23455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH--------------HH-HHHhcCChhHHHHHHHHHHHcCCCCC
Q 044044 293 SVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVI--------------MD-ELCKNGKMDKASRLLELMIWRGVNPN 357 (508)
Q Consensus 293 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~ 357 (508)
.+...+...|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++.+.+... .+
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 171 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-ND 171 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CC
Confidence 66667777777777777777766542 1122222222 22 36677888999999998887643 36
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
...+..+...+...|++++|...++++.+.. +.+...|..++..+...|++++|...++++.+... .+..++..+..+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 249 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 7888888899999999999999999888764 55788889999999999999999999999888643 367788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 438 LFEIHQVERALKLFDEMRRNHVAA-----------DTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++.+
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999888753221 46788889999999999999999887654
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=2.2e-18 Score=158.70 Aligned_cols=265 Identities=9% Similarity=-0.034 Sum_probs=191.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHH
Q 044044 179 TFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNT 258 (508)
Q Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (508)
.+..+...+...|++++|+.+|+++.... +.+..++..+...+...|++++|...++++.... +.+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~ 94 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAVHAA 94 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cCCHHHHHH
Confidence 34555556666666666666666665543 3355566666666666666666666666666643 334556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 044044 259 IIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSV--------------IR-GFCYANDWNEAKRLFIEMMDQGVQPDV 323 (508)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~ 323 (508)
+...+...|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+.
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 172 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDA 172 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCH
Confidence 666666667777777666666654211 22222222 22 3677788999999999988764 4467
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 788888889999999999999999988764 3357788889999999999999999999988764 55788899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKP-----------TVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
...|++++|.+.++++.+..... +..++..+..++...|++++|..++++..
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999988763321 46788899999999999999999886543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.1e-17 Score=150.54 Aligned_cols=272 Identities=11% Similarity=0.040 Sum_probs=187.2
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHH
Q 044044 187 LCAESRIMEAAALFTKHRVFACEPD--VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC 264 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (508)
....|++..|+..+++.... .|+ ......+..+|...|++++|+..++. . .+|+..++..+...+.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-------~~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-------SAPELQAVRMFAEYLA 76 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-------CChhHHHHHHHHHHHc
Confidence 44557888888877766543 232 23445667788888888888875543 1 2456777777888888
Q ss_pred ccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 044044 265 KEGFVDKAKELFLKMKDENINP-DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKAS 343 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 343 (508)
..|+.++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888877665434 455566666778888888888888766 356677777888888888888888
Q ss_pred HHHHHHHHcCCCCCHHh---HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 344 RLLELMIWRGVNPNTYT---YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
+.++.+.+.. |+... ....+..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|+..+++++
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888887763 34221 1223344455688888888888887763 6678888888888888888888888888888
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVER-ALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALEL 485 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 485 (508)
+..+. +..++..++..+...|+.++ +.++++++.+.+ |+... +.+...+.+.++++..-
T Consensus 228 ~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 228 DKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 76432 67778888888888888765 567888887753 33322 22334455555555443
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.1e-18 Score=160.25 Aligned_cols=282 Identities=13% Similarity=0.112 Sum_probs=137.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 044044 119 KNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAA 198 (508)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (508)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6788999999999983 2358999999999999999999999763 577799999999999999999999
Q ss_pred HHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 044044 199 LFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLK 278 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 278 (508)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88877764 5567889999999999999999888774 25667999999999999999999999997
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 044044 279 MKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNT 358 (508)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 358 (508)
+ ..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +..++
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCH
Confidence 7 37999999999999999999999988 2789999999999999999999655443 22344
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHhH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKN--KDVEEALSLYSEMLSKGIKP------TVVT 430 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~ 430 (508)
.-...++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++..+.++.|..-+ +++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHH
Confidence 445678899999999999999999998776 66788899988888765 34555555554221 2332 4667
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 044044 431 YNTLFLGLFEIHQVERALKL 450 (508)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~ 450 (508)
|..+...|...++++.|...
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 88899999999999988774
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=1.6e-17 Score=149.63 Aligned_cols=247 Identities=12% Similarity=0.103 Sum_probs=117.5
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
|+++.|+..++.+....|. ........+.++|...|+++.|+..++.. -+|+..++..+...+...++.++|++.
T Consensus 13 g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 13 GSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 5555555555544333332 11233344455555555555555544331 134444555555555555555555555
Q ss_pred HHHHHhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044044 165 LGRILRSCF-TPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 243 (508)
Q Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 243 (508)
+++++..+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++....
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 555554432 22334444444555555555555555554 2344455555555555555555555555555432
Q ss_pred CCCccccCCHhH---HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044044 244 EFGVVCKPNTVT---YNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 244 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 320 (508)
|+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++.+.. +
T Consensus 161 -------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 161 -------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp -------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred -------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 22111 111222223335555555555555444 23344445555555555555555555555554432 2
Q ss_pred CCHHhHHHHHHHHHhcCChhH-HHHHHHHHHHc
Q 044044 321 PDVVTFSVIMDELCKNGKMDK-ASRLLELMIWR 352 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 352 (508)
.+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 344444445555555555443 34444544443
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=6.9e-17 Score=157.00 Aligned_cols=365 Identities=10% Similarity=-0.067 Sum_probs=246.8
Q ss_pred CCCCCCCCChHHHHHHHHHhHHcC-------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC-------CCCCHH
Q 044044 78 GQGDINLITPNEALCIFDYMLRMH-------PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAG-------LFPDIY 143 (508)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~ 143 (508)
|..+...|++++|++.|+++++.. ..+....+|+.+..+|...|++++|...+++..+.. ......
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 344456789999999999987641 122256689999999999999999999999875421 112345
Q ss_pred hHHHHHHHHHhc--CCcchHHHHHHHHHhCCCCCCHHhHHHHHHH---HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHH
Q 044044 144 THSILINCFCKM--GRVSHGFVVLGRILRSCFTPNAVTFTSLIKG---LCAESRIMEAAALFTKHRVFACEPDVFTYNTL 218 (508)
Q Consensus 144 ~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 218 (508)
++.....++... +++++|+..|+++++.. +.+...+..+... +...++.++|++.+++..... +.+..++..+
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l 215 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHH
Confidence 666666666554 46899999999998864 3355566555554 345678889999999988774 4456666666
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 044044 219 INGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSV 294 (508)
Q Consensus 219 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 294 (508)
...+.. .|++++|.+++++..... +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKA-------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 655544 567889999999998864 5567889999999999999999999999998763 3356666666
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 044044 295 IRGFCYA-------------------NDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVN 355 (508)
Q Consensus 295 ~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 355 (508)
...|... +.++.|...+++..+.. +.+...+..+...+...|++++|...|+++++....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 6555322 23567888888887763 345567888999999999999999999999987544
Q ss_pred CCHH--hHHHHHH-HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044044 356 PNTY--TYNTLID-GYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYN 432 (508)
Q Consensus 356 ~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 432 (508)
+... .+..+.. .+...|+.++|+..|++..+.. |+..... +..+.+.+++++.++.. +.+..+|.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~ 434 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALH 434 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3321 2333332 3457899999999999998864 4432222 22344556666666654 33678999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRNH-VAADTYT 465 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 465 (508)
.+..+|...|++++|++.|++..+.+ ..|+...
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 99999999999999999999999864 2344433
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=172.21 Aligned_cols=135 Identities=12% Similarity=0.204 Sum_probs=107.7
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMES---NGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNT 433 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (508)
-..+|+++|++|++.|++++|.++|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 466888888888888999888888877654 46788888899888888888888899999988888888888888988
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 044044 434 LFLGLFEIHQ-VERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYEL 496 (508)
Q Consensus 434 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 496 (508)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ ..++.|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p 264 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSL 264 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCC
Confidence 8888888887 478888888888888888888888888766554 334444444 334444
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=5.9e-15 Score=151.30 Aligned_cols=352 Identities=14% Similarity=0.141 Sum_probs=188.3
Q ss_pred CCCCCChHHHHHHHHHhHHcCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 044044 81 DINLITPNEALCIFDYMLRMHP-SPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (508)
+...|.+.+|+++++++.-... ...+...-+.++.+..+. +..+..+..++.... + ...+...+...|.++
T Consensus 995 f~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFE 1066 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHH
Confidence 4467899999999999984422 012344555555544443 333333333333211 0 122334444455555
Q ss_pred hHHHHHHHHHhCC---------------------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHH
Q 044044 160 HGFVVLGRILRSC---------------------FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTL 218 (508)
Q Consensus 160 ~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 218 (508)
+|..+|++..... -..+..+|..+..++...|++++|++.|.+. .|...|..+
T Consensus 1067 EAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eV 1140 (1630)
T 1xi4_A 1067 EAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEV 1140 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHH
Confidence 5555544431000 0013444555555555555555555555432 244445555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 044044 219 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGF 298 (508)
Q Consensus 219 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (508)
+..+.+.|++++|+++|....+.. ++....+.++.+|++.+++++...+. + .++...|..+...|
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~--------~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKA--------RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRC 1205 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhc--------ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHH
Confidence 555555555555555555544432 11112223555555555554322221 1 12333444455555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHH
Q 044044 299 CYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHAR 378 (508)
Q Consensus 299 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (508)
...|++++|..+|... ..|..++.++.+.|++++|.+.+++.. +..+|..+..+|...|++..|.
T Consensus 1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHH
Confidence 5555555555555543 245555555555555555555555441 4455555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 044044 379 KLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI--HQVERALKLFDEMRR 456 (508)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~ 456 (508)
.....+ ..+...+..++..|...|.+++|+.+++..+... +-+...|+-|...+.+. ++..++.++|..-.
T Consensus 1271 ~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri- 1343 (1630)
T 1xi4_A 1271 MCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV- 1343 (1630)
T ss_pred HHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 544332 2355567778888888888888888888877654 33445666666666543 34555555554322
Q ss_pred CCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 044044 457 NHVAA------DTYTYNNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 457 ~~~~~------~~~~~~~li~~~~~~g~~~~A~~ 484 (508)
++++ +...|..++-.|.+.|+++.|..
T Consensus 1344 -ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1344 -NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred -ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 2222 56679999999999999999884
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=2.5e-14 Score=146.75 Aligned_cols=323 Identities=13% Similarity=0.167 Sum_probs=237.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGL--FPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSL 183 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (508)
++.--...+..|...|.+.+|++++++..-.+- .-+....+.++.+..+. +..+..+...+.... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 445556677788888999999999998874321 12344555666666665 455555655554321 13346
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHH
Q 044044 184 IKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGL 263 (508)
Q Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (508)
...+...|.+++|..+|++.. ......+.++. ..|++++|.++.++.. +..+|..+..++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------------~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------------EPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------------CHHHHHHHHHHH
Confidence 677788899999999998853 12222233322 6788899988888642 367888999999
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 044044 264 CKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKAS 343 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 343 (508)
...|++++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++..
T Consensus 1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH
Confidence 9999999999999664 267788889999999999999999998877754 33333445888888888887544
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 344 RLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG 423 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (508)
.+ ++ .++...|..+...|...|++++|..+|..+ ..|..++.++.+.|++++|++.+++.
T Consensus 1188 ~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1188 EF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred HH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 33 22 335566777888999999999999999875 36888999999999999999999876
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 424 IKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+.
T Consensus 1248 --~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1248 --NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred --CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2567888888888888888888887654 334666777888899999999999999987763
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=3.5e-16 Score=150.18 Aligned_cols=371 Identities=9% Similarity=-0.023 Sum_probs=248.3
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHY---DTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG--- 156 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 156 (508)
..|++++|+.+|.++.+.+ +..++..+...+...|+. ++|+..|++..+. +...+..+...+...+
T Consensus 15 ~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--CC
T ss_pred hCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCC
Confidence 3478999999999998764 555677777778888888 8999999998853 5566777777565555
Q ss_pred --CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 044044 157 --RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIM---EAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVA 231 (508)
Q Consensus 157 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 231 (508)
++++|...|++..+.|. ...+..|...|...+..+ ++.+.+.+....| +...+..+...|...+.++++
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 67899999999988763 336777777777665543 4555555555544 566777888888888866555
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC---CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----CCH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG---FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYA----NDW 304 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 304 (508)
.+....+...- ...+...+..+...|...| ++++|+++|++..+.|. ++...+..+...|... +++
T Consensus 161 ~~~a~~~~~~a------~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 161 LDDVERICKAA------LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp HHHHHHHHHHH------TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred HHHHHHHHHHH------HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH
Confidence 55433332221 1223448888999999999 99999999999998863 3555556677777555 799
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHH-H--HhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCC-----CHHH
Q 044044 305 NEAKRLFIEMMDQGVQPDVVTFSVIMDE-L--CKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTD-----KIDH 376 (508)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~ 376 (508)
++|+.+|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|..+|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999987 43 55566666666 4 46899999999999999876 6777778888777 45 9999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHH
Q 044044 377 ARKLFVSMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERAL 448 (508)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 448 (508)
|...|++.. . -+...+..+...|.. ..++++|..+|++..+.| +......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999887 4 477888888888876 449999999999999876 34455677777764 56899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 449 KLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.+|+...+.|.. +.......+......++.++|..+.++-.
T Consensus 379 ~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 379 VFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999988643 22222222222233345667777776654
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=4.2e-16 Score=149.64 Aligned_cols=350 Identities=13% Similarity=0.016 Sum_probs=242.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc---chHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 112 ILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRV---SHGFVVLGRILRSCFTPNAVTFTSLIKGLC 188 (508)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (508)
.+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|...|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677788999999999999998876 333455566666777887 8999999998754 5666777777555
Q ss_pred hcC-----CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 189 AES-----RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTI---VALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 189 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
..+ +.++|+..|++....| +...+..|...|...+..+ ++.+.+......+ +...+..+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---------~~~a~~~Lg 148 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---------YPEAGLAQV 148 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---------CTTHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---------CHHHHHHHH
Confidence 554 7889999999998865 3447788888888766544 4555555555433 456777888
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-
Q 044044 261 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAN---DWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKN- 336 (508)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 336 (508)
..|...+.++++......+.+.-...++..+..+...|...| +.++|++.|++..+.| .++...+..+...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 888888866555554333322211224448888888999999 9999999999999987 44555556677777554
Q ss_pred ---CChhHHHHHHHHHHHcCCCCCHHhHHHHHHH-H--HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 044044 337 ---GKMDKASRLLELMIWRGVNPNTYTYNTLIDG-Y--CLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK--- 407 (508)
Q Consensus 337 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 407 (508)
+++++|...|+... .| +...+..+... + ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 69999999999987 33 56677777776 4 56899999999999999876 7888888888887 55
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 044044 408 --DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCK----SG 477 (508)
Q Consensus 408 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 477 (508)
++++|+..|++.. .| +...+..|...|.. ..++++|.++|++..+.|. ......|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCC
Confidence 9999999999988 43 66777888877776 4499999999999998763 3345556666654 45
Q ss_pred CHHHHHHHHHHHHHcCCcc
Q 044044 478 FVLEALELFRAIRDSKYEL 496 (508)
Q Consensus 478 ~~~~A~~~~~~m~~~g~~p 496 (508)
+.++|..+|+...+.|...
T Consensus 373 d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp CHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHCCCHH
Confidence 8999999999999887543
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.1e-16 Score=137.04 Aligned_cols=227 Identities=14% Similarity=0.080 Sum_probs=196.7
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHh
Q 044044 252 NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPD----VVT 325 (508)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~ 325 (508)
....+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|+..++++.+... .++ ...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999998876 6888999999999999999999999999887521 112 578
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044044 326 FSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK 405 (508)
Q Consensus 326 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (508)
+..+...+...|++++|...++.+.+.. |+. ..+...|++++|...++++.... +.+...+..++..+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 8889999999999999999999999863 443 34666788999999999998874 4466788899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044044 406 NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALEL 485 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 485 (508)
.|++++|+..++++.+... .+..++..+..++...|++++|++.++++.+.. +.+...|..+..++.+.|++++|.+.
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999998743 367889999999999999999999999999864 44688899999999999999999999
Q ss_pred HHHHHHc
Q 044044 486 FRAIRDS 492 (508)
Q Consensus 486 ~~~m~~~ 492 (508)
|++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999854
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=168.66 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=121.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 321 PDVVTFSVIMDELCKNGKMDKASRLLELMIW---RGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
.-..||+++|++|++.|++++|.++|.+|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988764 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 044044 398 TLINWYCKNKD-VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD------TYTYNNFI 470 (508)
Q Consensus 398 ~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li 470 (508)
++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+ +..++.++++ ..+..|+ ..+-..|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999987 47899999999999999999999988865544 3444444444 2334443 33344455
Q ss_pred HHHHhcC
Q 044044 471 DGLCKSG 477 (508)
Q Consensus 471 ~~~~~~g 477 (508)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555444
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.6e-15 Score=134.38 Aligned_cols=232 Identities=13% Similarity=0.024 Sum_probs=166.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY 256 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (508)
...+..+...+...|++++|+..|++..... .+..+|..+..++...|++++|+..++++....+......+.....+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567778888899999999999999988876 67888999999999999999999999998875411000000015788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKN 336 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (508)
..+...+...|++++|.+.|+++.+. .|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999998875 3342 34556677888888888877652 23445666667777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 337 GKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLY 416 (508)
Q Consensus 337 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (508)
|++++|...++.+++.. +.+...+..+...+...|++++|...++++.+.. +.+...|..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777777777653 2246666666777777777777777777666653 445666666666777777777777777
Q ss_pred HHHHHC
Q 044044 417 SEMLSK 422 (508)
Q Consensus 417 ~~~~~~ 422 (508)
+++.+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.5e-15 Score=130.64 Aligned_cols=198 Identities=13% Similarity=0.029 Sum_probs=108.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 287 DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLID 366 (508)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (508)
+...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...++++++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33444444444455555555555555544432 2234444444445555555555555555554442 113444444455
Q ss_pred HHHcC-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 044044 367 GYCLT-----------DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLF 435 (508)
Q Consensus 367 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 435 (508)
++... |++++|...+++..+.. +.+...|..+..++...|++++|+..|+++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 77777777777776654 4456667777777777777777777777777665 4666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 436 LGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.++...|++++|+..|+++.+.. +.+...+..+...+.+.|++++|++.|++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77777777777777777777653 3356666677777777777777777776553
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.8e-15 Score=130.12 Aligned_cols=193 Identities=15% Similarity=0.024 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHH
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 292 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (508)
..+..+...+.+.|++++|+..|++....+ +.+...+..+..++.+.|++++|...|++..+.. +.+...+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 77 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM 77 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 334444444444444444444444444432 2233344444444444444444444444443331 11233333
Q ss_pred HHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhH
Q 044044 293 SVIRGFCYA-----------NDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTY 361 (508)
Q Consensus 293 ~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 361 (508)
.+...+... |++++|+..+++..+.. +.+...+..+..++...|++++|...++++++.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 333333333 44444444444444331 1223334444444444444444444444444433 233444
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYS 417 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (508)
..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|+..++
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444444444444444444444444332 2233344444444444444444444443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=6.4e-14 Score=125.24 Aligned_cols=225 Identities=13% Similarity=0.007 Sum_probs=201.1
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhH
Q 044044 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPDVVTF 326 (508)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 326 (508)
-+...+..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 367788889999999999999999999998843 56788888999999 999999999999999876 67888
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044044 327 SVIMDELCK----NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL----TDKIDHARKLFVSMESNGCMHDVVSYNT 398 (508)
Q Consensus 327 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 398 (508)
..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 889999999 999999999999999875 77889999999999 999999999999999875 6778888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044044 399 LINWYCK----NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERALKLFDEMRRNHVAADTYTYNNFI 470 (508)
Q Consensus 399 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 470 (508)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 9999988 999999999999999874 56788889999999 999999999999999874 367788888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcC
Q 044044 471 DGLCK----SGFVLEALELFRAIRDSK 493 (508)
Q Consensus 471 ~~~~~----~g~~~~A~~~~~~m~~~g 493 (508)
..|.+ .|++++|.+.|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99998 999999999999999876
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=7.1e-14 Score=124.96 Aligned_cols=224 Identities=14% Similarity=0.012 Sum_probs=132.3
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCC
Q 044044 211 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK----EGFVDKAKELFLKMKDENINP 286 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 286 (508)
+..++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---
Confidence 34455555555555666666666666555432 23445555555555 566666666666655543
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCH
Q 044044 287 DVVTYTSVIRGFCY----ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK----NGKMDKASRLLELMIWRGVNPNT 358 (508)
Q Consensus 287 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 358 (508)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +.
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 44555555555555 666666666666665543 44555555566666 666666666666666553 44
Q ss_pred HhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhH
Q 044044 359 YTYNTLIDGYCL----TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIKPTVVT 430 (508)
Q Consensus 359 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~ 430 (508)
..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 455555555555 666666666666666553 45556666666666 666666666666666653 2455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 044044 431 YNTLFLGLFE----IHQVERALKLFDEMRRNH 458 (508)
Q Consensus 431 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 458 (508)
+..+...|.. .+++++|.+.+++..+.+
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5566666666 666666766666666543
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=1.1e-14 Score=130.11 Aligned_cols=235 Identities=10% Similarity=0.016 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--hhh
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD--VVT 290 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 290 (508)
..+......+...|++++|+..|+++.... +.+...+..+..++...|++++|.+.++++.+....++ ...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHH
Confidence 344455566666666777777766666653 23344666666666666777777766666665321111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 5566666666666666666666666542 2234455666666666666666666666665442 2234455555522223
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HhHHHHHHHHHHh
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD---VEEALSLYSEMLSKG-IKPT------VVTYNTLFLGLFE 440 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~ 440 (508)
.+++++|.+.++++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...|..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 346666666666665543 3345555555555555555 555666665555431 1122 1345555556666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044044 441 IHQVERALKLFDEMRRN 457 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~~ 457 (508)
.|++++|.+.++++.+.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 66666666666666554
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=1.3e-15 Score=136.40 Aligned_cols=227 Identities=9% Similarity=-0.089 Sum_probs=144.4
Q ss_pred CCCCCCCChHHHHHHHHHhHHcCCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 79 QGDINLITPNEALCIFDYMLRMHPSP--PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG 156 (508)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 156 (508)
......|++++|+..|+++++..+.. .+..+|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc
Confidence 34455678888888888888764321 246677888888888888888888888887753 445677777777777788
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFE 236 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 236 (508)
++++|...++++++.. +.+..++..+...+...|++++|...|+++.... |+.......+..+...|++++|...++
T Consensus 92 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888888777777653 3355667777777777777777777777776652 333333333444455677777777776
Q ss_pred HHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 237 EMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINP---DVVTYTSVIRGFCYANDWNEAKRLFIE 313 (508)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 313 (508)
+..... +++...+. ++..+...++.++|.+.++++.+..... +...+..+...+...|++++|...|++
T Consensus 169 ~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 169 QHFEKS-------DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHS-------CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcC-------CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665543 23333333 5555666666666766666665431100 134455555555556666666666655
Q ss_pred HHHc
Q 044044 314 MMDQ 317 (508)
Q Consensus 314 ~~~~ 317 (508)
+.+.
T Consensus 241 al~~ 244 (275)
T 1xnf_A 241 AVAN 244 (275)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 5543
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=1.4e-14 Score=134.67 Aligned_cols=238 Identities=9% Similarity=-0.048 Sum_probs=194.6
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcch
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH-YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSH 160 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 160 (508)
...|++++|+..|+++++.+|. +..+|+.+..++...|+ +++|+..|+++++.. +-+...|..+..++...|++++
T Consensus 108 ~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHH
Confidence 3567899999999999999988 88999999999999997 999999999999864 5578889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh-cCChHHH-----HHH
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR-TGHTIVA-----LNL 234 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~ 234 (508)
|+..|+++++.. +.+...|..+..++.+.|++++|+..|++++... +.+..+|+.+..++.. .|..++| +..
T Consensus 185 Al~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 185 ELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 999999999875 4578899999999999999999999999999875 4478899999999998 6665777 588
Q ss_pred HHHHHhCCCCCCccccCCHhHHHHHHHHHHccC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---------C
Q 044044 235 FEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG--FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAN---------D 303 (508)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~ 303 (508)
|++....+ +.+...|+.+..++...| ++++|.+.+.++ +. .+.+...+..+...|.+.| .
T Consensus 263 ~~~Al~l~-------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 263 TLEMIKLV-------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHS-------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHC-------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 88888864 456788999999998888 689999999888 33 3446677888888888764 2
Q ss_pred HHHHHHHHHHH-HHcCCCCCHHhHHHHHHHHH
Q 044044 304 WNEAKRLFIEM-MDQGVQPDVVTFSVIMDELC 334 (508)
Q Consensus 304 ~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 334 (508)
.++|+++|+++ .+.. +.....|..+...+.
T Consensus 334 ~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 334 LNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 58899999988 5542 333445555554443
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.5e-14 Score=129.23 Aligned_cols=57 Identities=14% Similarity=0.295 Sum_probs=22.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHH
Q 044044 112 ILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRIL 169 (508)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 169 (508)
.....+...|++++|+..|+++.+.. +.+...+..+..++...|++++|++.++++.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 64 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444444444444332 1122233333334444444444444444433
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=2.3e-14 Score=133.29 Aligned_cols=131 Identities=4% Similarity=-0.040 Sum_probs=57.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-cchHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR-VSHGFVVLGRILRSCFTPNAVTFTSLIKG 186 (508)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (508)
.+|..+..++...|++++|+..|+++++.. +-+...|..+..++...|+ +++|+..++++++.. +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 344444445555555555555555554432 2234444444444444443 444444444444432 1233444444444
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 187 LCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
+...|++++|+..|+++.... +.+..+|..+..++...|++++|+..|+++...
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 444444444444444444432 223344444444444444444444444444443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=5.4e-14 Score=124.07 Aligned_cols=198 Identities=9% Similarity=-0.040 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 2233444444555555555555555555554442 1234455555555555
Q ss_pred CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 044044 371 TDKIDHARKLFVSMESNGC-MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALK 449 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (508)
.|++++|.++++++.+.+. +.+...+..++..+...|++++|...++++.+... .+...+..++..+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555666555555554111 22344555555666666666666666666655432 245555666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 450 LFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666665542 234555556666666666666666666666543
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=7.3e-15 Score=131.49 Aligned_cols=219 Identities=11% Similarity=0.014 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHHhhhcCC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 191 SRIMEAAALFTKHRVFAC---EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 191 g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
|++++|+..|+++..... +.+..++..+...+...|++++|+..|+++...+ +.+...|..++..+...|
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHcc
Confidence 455555555555554321 1123445555555555666666666665555543 234555555555555556
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLE 347 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 347 (508)
++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+.
T Consensus 92 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666666655555432 1234455555555555555555555555555432 222222223333344455555555555
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 348 LMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCM---HDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
...... +++...+ .++..+...++.++|...++++.+.... .+...|..++..|...|++++|...|+++.+
T Consensus 169 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 169 QHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444432 1122222 2344444445555555555544432100 0123444444445555555555555555444
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=8.8e-14 Score=120.20 Aligned_cols=212 Identities=9% Similarity=-0.051 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 044044 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGY 368 (508)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (508)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 334444444455555555555555544432 2234445555555555555555555555555442 22445555556666
Q ss_pred HcC-CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 044044 369 CLT-DKIDHARKLFVSMESNGC-MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVER 446 (508)
Q Consensus 369 ~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 446 (508)
... |++++|...++++.+... +.+...+..++.++...|++++|+..++++.+... .+...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666655211 12245566666666666666666666666665432 245566666666667777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHH
Q 044044 447 ALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLI 505 (508)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 505 (508)
|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+......++
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 7777766665432135555666666666677777777776666543 35444444443
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=8.9e-14 Score=122.64 Aligned_cols=199 Identities=14% Similarity=0.013 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHH
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 292 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (508)
..|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-------PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 445555566666666666666666665543 2345555666666666666666666666655442 22444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcC
Q 044044 293 SVIRGFCYANDWNEAKRLFIEMMDQGVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLT 371 (508)
Q Consensus 293 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (508)
.+...+...|++++|.++++++.+.+..| +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 55555555556666655555555421122 23344444555555555555555555554442 11344444455555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555555544432 33444444444555555555555555555544
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=8.3e-15 Score=128.46 Aligned_cols=195 Identities=12% Similarity=0.015 Sum_probs=132.3
Q ss_pred ccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 76 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
..|..+...|++++|+..|+++++..|. +...+..++..+...|++++|+..++++.+.. +.+...+..+...+...
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp --------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 4555667778888888888888887766 67788888888888888888888888887653 44667777777777788
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 044044 156 GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLF 235 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 235 (508)
|++++|.+.++++.+.. +.+...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++|+..|
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887777653 3356667777777777777777777777776653 335666777777777777777777777
Q ss_pred HHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 236 EEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
+++.... +.+..++..+..++...|++++|.+.++++.+.
T Consensus 183 ~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 183 AAVTEQD-------PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHC-------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7776653 344566777777777777777777777777664
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=2e-13 Score=117.88 Aligned_cols=59 Identities=10% Similarity=-0.066 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|.+.++++..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 70 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 333333334444444444444333322 12233333344444444444444444444333
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=2.3e-12 Score=127.82 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---cchHHH
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR---VSHGFV 163 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~ 163 (508)
..+.+..|+..+..+|. |...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ .+.+.+
T Consensus 48 ~~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34456667777777776 8888888888887778888888888888775 35567777777777777777 788888
Q ss_pred HHHHHHhCC-CCCCHHhHHHHHHHHHhcCCH--------HHHHHHHHHhhh-cCC-CCC-HhhHHHHHHHHHh-------
Q 044044 164 VLGRILRSC-FTPNAVTFTSLIKGLCAESRI--------MEAAALFTKHRV-FAC-EPD-VFTYNTLINGLCR------- 224 (508)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~------- 224 (508)
+|++.+... .+|++..|...+....+.++. +...++|+.... .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888877653 136777777776655554443 233466666443 244 333 4566666654332
Q ss_pred --cCChHHHHHHHHHHHh
Q 044044 225 --TGHTIVALNLFEEMAN 240 (508)
Q Consensus 225 --~g~~~~A~~~~~~~~~ 240 (508)
.++++.+..+|+.+..
T Consensus 205 eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 3345667777777664
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=2.2e-14 Score=125.73 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
.+..+..++...|++++|...++++.+
T Consensus 195 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 195 AFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 333333334444444444444443333
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.6e-14 Score=137.20 Aligned_cols=301 Identities=14% Similarity=0.063 Sum_probs=182.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN 252 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 252 (508)
...+......+...|++++|+..|++....+ +.+ ..++..+...+...|++++|+..+++........+. .+..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~ 86 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-QLGE 86 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-cHHH
Confidence 3444455555666666666666666665543 112 234556666666666666666666655432100000 1112
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHHhcCC--------------------HHHH
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDENI-NPD----VVTYTSVIRGFCYAND--------------------WNEA 307 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a 307 (508)
..++..+...+...|++++|...+++..+... ..+ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566666666777777777776666543200 001 3356666666777777 7777
Q ss_pred HHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHcCCCHHHH
Q 044044 308 KRLFIEMMDQ----GVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGV-NPN----TYTYNTLIDGYCLTDKIDHA 377 (508)
Q Consensus 308 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A 377 (508)
...+++..+. +..+ ...++..+...+...|++++|...++++.+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777665432 1111 123566677778888888888888877765311 111 23677777888888888888
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhcCCHHHH
Q 044044 378 RKLFVSMESNGC-MHD----VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK-PT----VVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 378 ~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a 447 (508)
...+++..+... ..+ ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888887764310 011 456777888888889999999888887754111 11 45677888888899999999
Q ss_pred HHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCH
Q 044044 448 LKLFDEMRRN----HV-AADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 448 ~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~ 479 (508)
.+.+++..+. +. .....++..+...+...|+.
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9988887643 11 11244566677777777765
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=2.7e-14 Score=135.98 Aligned_cols=274 Identities=12% Similarity=0.025 Sum_probs=159.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDV----FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY 256 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (508)
..+...+...|++++|+..|+++...+ +.+. .+|..+...|...|++++|+..+++........+ ..+.....+
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~ 129 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-DRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc-CchHHHHHH
Confidence 344455566666666666666666553 1122 3566666666777777777777766554310000 012234566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC----C-CCCChhhHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDE----N-INPDVVTYTSVIRGFCYAND-----------------WNEAKRLFIEM 314 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~ 314 (508)
..+...|...|++++|.+.++++.+. + .......+..+...|...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77777777778888777777776542 1 01123456666677777777 77777777665
Q ss_pred HHc----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 044044 315 MDQ----GVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVN-PN----TYTYNTLIDGYCLTDKIDHARKLFVSM 384 (508)
Q Consensus 315 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (508)
.+. +..+ ....+..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 1111 1235666666777777777777777766543110 01 225666667777777777777777666
Q ss_pred HhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 385 ESNGCM-----HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI-----KPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 385 ~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
.+.... ....++..+...+...|++++|...+++.++... .....++..+...|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 543100 1134566666777777777777777776654310 011235566666677777777777777666
Q ss_pred HH
Q 044044 455 RR 456 (508)
Q Consensus 455 ~~ 456 (508)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=9.4e-15 Score=139.15 Aligned_cols=274 Identities=12% Similarity=0.050 Sum_probs=211.7
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH----hHHHHHHHHHHccCCHHHHHHHHHHHhhC----C
Q 044044 212 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT----VTYNTIIDGLCKEGFVDKAKELFLKMKDE----N 283 (508)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 283 (508)
...+..+...+...|++++|+..|+++.... +.+. ..+..+...+...|++++|.+.++++.+. +
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3445567788899999999999999999865 2232 47888999999999999999999987653 1
Q ss_pred C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCC-----------------hh
Q 044044 284 I-NPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GV-QPDVVTFSVIMDELCKNGK-----------------MD 340 (508)
Q Consensus 284 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~ 340 (508)
. ......+..+...|...|++++|...+++..+. +. .....++..+...+...|+ ++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 1 123467788889999999999999999987754 11 1224477888889999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 044044 341 KASRLLELMIWR----GVNP-NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGC-MHD----VVSYNTLINWYCKNKDVE 410 (508)
Q Consensus 341 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~ 410 (508)
+|...+++..+. +..+ ...++..+...|...|++++|...+++..+... ..+ ...+..+...|...|+++
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 999998887653 1111 245778888999999999999999998876410 012 237888999999999999
Q ss_pred HHHHHHHHHHHCCCC-----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHH
Q 044044 411 EALSLYSEMLSKGIK-----PTVVTYNTLFLGLFEIHQVERALKLFDEMRRN----H-VAADTYTYNNFIDGLCKSGFVL 480 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~ 480 (508)
+|+..++++.+.... ....++..+...+...|++++|.+.+++..+. + .......+..+...|.+.|+++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 999999988764111 12467888999999999999999999988753 1 1112447788899999999999
Q ss_pred HHHHHHHHHHHc
Q 044044 481 EALELFRAIRDS 492 (508)
Q Consensus 481 ~A~~~~~~m~~~ 492 (508)
+|.+.|++..+.
T Consensus 361 ~A~~~~~~al~~ 372 (411)
T 4a1s_A 361 RALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=2.7e-14 Score=135.61 Aligned_cols=276 Identities=13% Similarity=0.061 Sum_probs=212.7
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC----HhHHHHHHHHHHccCCHHHHHHHHHHHhhC--
Q 044044 209 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYNTIIDGLCKEGFVDKAKELFLKMKDE-- 282 (508)
Q Consensus 209 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 282 (508)
......+......+...|++++|+..|+++.... +.+ ...+..+...+...|++++|...++++...
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3455667788889999999999999999999864 223 357888999999999999999999987542
Q ss_pred --CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCC----------------
Q 044044 283 --NINP-DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV-QPD----VVTFSVIMDELCKNGK---------------- 338 (508)
Q Consensus 283 --~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~---------------- 338 (508)
+..+ ....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 2111 245677888899999999999999998875410 011 3477888889999999
Q ss_pred ----hhHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHH
Q 044044 339 ----MDKASRLLELMIWR----GVNP-NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGC-MHD----VVSYNTLINWYC 404 (508)
Q Consensus 339 ----~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~ 404 (508)
+++|...++...+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999998877653 1111 245678888999999999999999998765310 112 337888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHH
Q 044044 405 KNKDVEEALSLYSEMLSKGIK-PT----VVTYNTLFLGLFEIHQVERALKLFDEMRRNHV-AAD----TYTYNNFIDGLC 474 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~ 474 (508)
..|++++|...+++..+.... .+ ..++..+...+...|++++|.+.+++..+... ..+ ..++..+...|.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999999999998754111 11 55788899999999999999999998875311 112 557888999999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 044044 475 KSGFVLEALELFRAIRD 491 (508)
Q Consensus 475 ~~g~~~~A~~~~~~m~~ 491 (508)
..|++++|.+.+++..+
T Consensus 319 ~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999874
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=5.7e-13 Score=121.23 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=153.5
Q ss_pred HHHHHHHHHhHHcCCCCCCcccHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAK-------NKHY-------DTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
+.|+.+|++++...|. +...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 7899999999999887 88899998888763 4776 788888888887311335667888888888
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH-hcCChHHH
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAV-TFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC-RTGHTIVA 231 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 231 (508)
+.|++++|.++|+++++... .+.. +|..++..+.+.|++++|..+|++..... +.+...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888877521 1233 67777777777788888888888777653 233444443333322 25777777
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC-CCC--ChhhHHHHHHHHHhcCCHHHHH
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDEN-INP--DVVTYTSVIRGFCYANDWNEAK 308 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~ 308 (508)
..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... .+| ....|..++....+.|+.+.|.
T Consensus 189 ~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 189 FKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777653 3456677777777777777777777777777652 233 3456666677777777777777
Q ss_pred HHHHHHHHc
Q 044044 309 RLFIEMMDQ 317 (508)
Q Consensus 309 ~~~~~~~~~ 317 (508)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777664
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=2.6e-13 Score=127.79 Aligned_cols=232 Identities=8% Similarity=-0.073 Sum_probs=178.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC----CCHHhH
Q 044044 258 TIIDGLCKEGFVDKAKELFLKMKDE----NINP-DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--VQ----PDVVTF 326 (508)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~ 326 (508)
.....+...|++++|.+.|++..+. +-.+ ....+..+...|...|++++|...+++..+.- .. ....++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3667788999999999999998764 1111 24678888999999999999999999987631 11 123478
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 044044 327 SVIMDELCKNGKMDKASRLLELMIWRGVN-PN----TYTYNTLIDGYCLTDKIDHARKLFVSMES-----NGCMHDVVSY 396 (508)
Q Consensus 327 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 396 (508)
..+..+|...|++++|...++++++.... ++ ..++..+...|...|++++|...+++..+ ...+....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88889999999999999999988754111 11 34788899999999999999999999877 3223456778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSK----GIKPTVVTYNTLFLGLFEIHQ---VERALKLFDEMRRNHVAADTYTYNNF 469 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l 469 (508)
..+...+...|++++|...+++..+. +-+.....+..+...+...|+ .++|+.++++... .+.....+..+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~l 345 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHH
Confidence 99999999999999999999998764 111122345678888889999 7777777766521 12234467789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 044044 470 IDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 470 i~~~~~~g~~~~A~~~~~~m~~ 491 (508)
...|...|++++|...|++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=9.4e-14 Score=127.99 Aligned_cols=279 Identities=14% Similarity=0.042 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH
Q 044044 180 FTSLIKGLCAESRIMEAAALFTKHRVFACEPD----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT 255 (508)
Q Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (508)
+......+...|++++|+..|+++.... +.+ ...+..+...+...|++++|+..+++........+ ..+.....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-DQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-ccHHHHHH
Confidence 3344555666677777777777766653 222 34566677777777777777777776554210000 01122446
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 044044 256 YNTIIDGLCKEGFVDKAKELFLKMKDENI-NPD----VVTYTSVIRGFCYAND--------------------WNEAKRL 310 (508)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~ 310 (508)
+..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66777777777788877777777644210 011 2355566666666666 6666666
Q ss_pred HHHHHHc----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044044 311 FIEMMDQ----GVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSME 385 (508)
Q Consensus 311 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (508)
+++.... +..+ ....+..+...+...|++++|...++++.+...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------------------- 214 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK------------------------------- 214 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------------------------
Confidence 6554321 1000 112344444455555555555555544432200
Q ss_pred hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 044044 386 SNG-CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIK-P----TVVTYNTLFLGLFEIHQVERALKLFDEMRRN-- 457 (508)
Q Consensus 386 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 457 (508)
..+ ......++..+...+...|++++|...+++..+.... . ...++..+...+...|++++|.+.++++.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 000 0001223444455555555555555555554432000 0 1334555555666666666666666555432
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 458 --HV-AADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 458 --~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+. .....++..+...|.+.|++++|...+++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 10 01133455666666666777777776666654
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=5.1e-14 Score=129.76 Aligned_cols=243 Identities=12% Similarity=0.045 Sum_probs=149.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC----HhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC
Q 044044 214 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN 285 (508)
Q Consensus 214 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~ 285 (508)
.+......+...|++++|+.+|+++.... +.+ ...+..+...+...|++++|.+.+++..+. +..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 79 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc
Confidence 34455666777788888888888777754 122 346667777777777777777777765432 111
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCC-------------hhHHHHHH
Q 044044 286 -PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV-QPD----VVTFSVIMDELCKNGK-------------MDKASRLL 346 (508)
Q Consensus 286 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~-------------~~~a~~~~ 346 (508)
.....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|+ .+++...
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~- 158 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA- 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-
Confidence 1133455555666666666666666665543210 001 1133344444444444 1111111
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 347 ELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN----G-CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+++|.+.+++..+. + .+.....+..+...+...|++++|...+++..+
T Consensus 159 ---------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 159 ---------------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44554444443221 1 011234677778888888888888888888765
Q ss_pred C----CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 422 K----GI-KPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHV-AAD----TYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 422 ~----~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
. +. .....++..+...+...|++++|.+.+++..+... ..+ ..++..+...|...|++++|...++++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 212 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3 11 11234788899999999999999999998875311 112 55778889999999999999999999874
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=1.4e-13 Score=129.55 Aligned_cols=301 Identities=10% Similarity=-0.042 Sum_probs=180.7
Q ss_pred HHhcCChhHHHHHHHHHHhC--CCCCC--HHhHHHHHHH--HHhcCCcchHH-----------HHHHHHHhCCCCCCHH-
Q 044044 117 LAKNKHYDTVLSLFKRLNSA--GLFPD--IYTHSILINC--FCKMGRVSHGF-----------VVLGRILRSCFTPNAV- 178 (508)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~~~- 178 (508)
+.+.+++++|..+++++.+. ....| ...|-.++.. ....++++.+. +.++.+.... .+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 34678888888888877543 12223 2333333322 11223333333 6666654321 1111
Q ss_pred -----hHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 044044 179 -----TFTSLIKGLCAESRIMEAAALFTKHRVFAC-EP----DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 248 (508)
Q Consensus 179 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 248 (508)
.+......+...|++++|+..|++....-. .+ ...++..+...|...|++++|+..+++........+..
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 122355677888999999999999876410 12 24678899999999999999999999987643211000
Q ss_pred ccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 044044 249 CKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENIN-PD----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GV 319 (508)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~ 319 (508)
.+....+++.+...|...|++++|.+.|++..+.... .+ ..++..+...|...|++++|+..+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1112457888889999999999999999887643100 11 236677777888888888888888777662 22
Q ss_pred -CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHhHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCC
Q 044044 320 -QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG----VNPNTYTYNTLIDGYCLTDK---IDHARKLFVSMESNGCMH 391 (508)
Q Consensus 320 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~ 391 (508)
+....++..+..++.+.|++++|...+++..+.. .+.....+..+...|...|+ +++|..++++... .+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHH
Confidence 2234566777777777788777777777765431 11112224455566666666 5555555554411 011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
....+..+...|...|++++|...+++..+
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223455566666666666666666666554
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=1.4e-12 Score=108.85 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=112.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044044 322 DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLIN 401 (508)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (508)
+...|..+...+...|++++|...|+++++... -+...+..+..+|.+.|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 445666666666666777777777766666532 245666666666777777777777776666553 445556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 402 WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 481 (508)
.+...++++.|...+.+..+... .+...+..+..++...|++++|++.|++..+.. +.+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 66777777777777777666532 245566667777777777777777777776653 2356667777777777777777
Q ss_pred HHHHHHHHHHcCCccCHHHH
Q 044044 482 ALELFRAIRDSKYELNIVSY 501 (508)
Q Consensus 482 A~~~~~~m~~~g~~p~~~~~ 501 (508)
|++.|++.++ +.|+...|
T Consensus 160 A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHh--CCccCHHH
Confidence 7777777765 34554433
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=1.1e-13 Score=133.69 Aligned_cols=217 Identities=12% Similarity=0.011 Sum_probs=185.3
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHY-DTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVV 164 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 164 (508)
.+++|+..++......+. +...+..+...+...|++ ++|++.|+++.+.. +.+...|..+..++.+.|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~~~--~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV--EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 367788888887776665 888999999999999999 99999999998864 45688999999999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc--------CC
Q 044044 165 LGRILRSCFTPNAVTFTSLIKGLCAE---------SRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT--------GH 227 (508)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 227 (508)
|+++++.. |+...+..+...+... |++++|+..|++..... +.+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99999874 6678899999999999 99999999999998875 44688999999999998 99
Q ss_pred hHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 044044 228 TIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEA 307 (508)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 307 (508)
+++|+..|++....++. ...+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|
T Consensus 237 ~~~A~~~~~~al~~~p~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRK----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHCGG----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999986410 01478899999999999999999999999998763 33566788888888889999988
Q ss_pred HHHHHH
Q 044044 308 KRLFIE 313 (508)
Q Consensus 308 ~~~~~~ 313 (508)
++.+.+
T Consensus 312 i~~~~~ 317 (474)
T 4abn_A 312 LESKGK 317 (474)
T ss_dssp HHHTTT
T ss_pred HHHhcc
Confidence 876544
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=5.2e-12 Score=114.87 Aligned_cols=218 Identities=11% Similarity=0.035 Sum_probs=176.9
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 044044 270 DKAKELFLKMKDENINPDVVTYTSVIRGFCY-------ANDW-------NEAKRLFIEMMDQGVQPDVVTFSVIMDELCK 335 (508)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (508)
++|...|+++.... +.++..|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999988752 4467788888777653 5775 8999999999984224456689999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HH-hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 044044 336 NGKMDKASRLLELMIWRGVNPN-TY-TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC-KNKDVEEA 412 (508)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 412 (508)
.|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|..+|+++.+.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999975 443 43 89999999999999999999999999875 445555654444322 37999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 413 LSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH-VAA--DTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 413 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
..+|+++++..+ -+...|..++..+...|++++|..+|++..+.. ++| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988643 367888999999999999999999999999863 344 4678999999999999999999999999
Q ss_pred HHc
Q 044044 490 RDS 492 (508)
Q Consensus 490 ~~~ 492 (508)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=5.4e-13 Score=128.85 Aligned_cols=215 Identities=13% Similarity=-0.018 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 044044 269 VDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDW-NEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLE 347 (508)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 347 (508)
++++...+++.... .+.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666665554 234677777888888888888 88888888887763 3456788888888888888888888888
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHcC---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 044044 348 LMIWRGVNPNTYTYNTLIDGYCLT---------DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKN--------KDVE 410 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 410 (508)
++++. .|+...+..+...|... |++++|...++++.+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88866 45667788888888888 88888888888888765 55678888888888887 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044044 411 EALSLYSEMLSKGIK--PTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRA 488 (508)
Q Consensus 411 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 488 (508)
+|+..|+++++.... -+...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888875321 367788888888888888888888888888763 33566778888888888888888875544
Q ss_pred H
Q 044044 489 I 489 (508)
Q Consensus 489 m 489 (508)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=5.3e-11 Score=118.15 Aligned_cols=403 Identities=10% Similarity=0.015 Sum_probs=282.3
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCC---hhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCc--
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH---YDTVLSLFKRLNSAG-LFPDIYTHSILINCFCKMGRV-- 158 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~-- 158 (508)
++++.+..+|+.++...|. ....|...+..-.+.|+ ++.+..+|++.+... ..|+...|...+.-..+.++.
T Consensus 80 ~~~~~aR~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 80 KQWKQVYETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp TCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred CcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 5899999999999999987 88899999999889999 999999999998863 138999999888877666654
Q ss_pred ------chHHHHHHHHHh-CCC-CC-CHHhHHHHHHHHHh---------cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHH
Q 044044 159 ------SHGFVVLGRILR-SCF-TP-NAVTFTSLIKGLCA---------ESRIMEAAALFTKHRVFACEPDVFTYNTLIN 220 (508)
Q Consensus 159 ------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 220 (508)
+...++|+.++. .|. .+ +...|...+..... .++++.+..+|++++......-..+|.....
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 234477887665 455 44 45688888766542 3457788999999885311111233322211
Q ss_pred HHHh-------------cCChHHHHHHHHHHHhCCCCCCc------------cccC-------CHhHHHHHHHHHHccC-
Q 044044 221 GLCR-------------TGHTIVALNLFEEMANGNGEFGV------------VCKP-------NTVTYNTIIDGLCKEG- 267 (508)
Q Consensus 221 ~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~------------~~~~-------~~~~~~~l~~~~~~~g- 267 (508)
.-.. ..+++.|...+.++......... .+++ ....|...+..--..+
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 1111 12334455555543321110000 0010 1245666665544432
Q ss_pred ------CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 044044 268 ------FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAK-RLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD 340 (508)
Q Consensus 268 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (508)
..+.+..+|+++... .+.....|...+..+...|+.++|. ++|+..... ++.+...|...+....+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 345567789888776 4457788888888888899999997 999999875 4556667778888889999999
Q ss_pred HHHHHHHHHHHcC---------CCC------------CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044044 341 KASRLLELMIWRG---------VNP------------NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTL 399 (508)
Q Consensus 341 ~a~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (508)
.|..+|+.+++.. ..| ...+|...+....+.|+.+.|..+|.++.+.........|...
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999988641 013 2346888888888899999999999999876112233445444
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc
Q 044044 400 INWYCKN-KDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAA--DTYTYNNFIDGLCKS 476 (508)
Q Consensus 400 ~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 476 (508)
+..-.+. ++.+.|.++|+..++. .+-+...+...+......|+.+.|..+|++.......+ ....|...+..-.+.
T Consensus 476 A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 476 AYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 4443444 4599999999999987 33356667788888888999999999999998864322 346888899888999
Q ss_pred CCHHHHHHHHHHHHHc
Q 044044 477 GFVLEALELFRAIRDS 492 (508)
Q Consensus 477 g~~~~A~~~~~~m~~~ 492 (508)
|+.+.+.++.+++.+.
T Consensus 555 G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFEK 570 (679)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999875
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=3.1e-12 Score=106.72 Aligned_cols=166 Identities=16% Similarity=0.066 Sum_probs=81.2
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 044044 252 NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMD 331 (508)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (508)
+..+|..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34455555555555555555555555555432 1234445555555555555555555555554432 223334444444
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 332 ELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEE 411 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (508)
.+...++++.+...+....+.. +.+...+..+...|.+.|++++|++.|+++.+.. +.+...|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 4555555555555555544432 1234444444455555555555555555544433 3344444455555555555555
Q ss_pred HHHHHHHHHH
Q 044044 412 ALSLYSEMLS 421 (508)
Q Consensus 412 A~~~~~~~~~ 421 (508)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=6.1e-14 Score=127.84 Aligned_cols=242 Identities=14% Similarity=0.052 Sum_probs=172.7
Q ss_pred ccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 044044 249 CKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-------NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ---- 317 (508)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 317 (508)
.+.+..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++..+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999998763 22334567888899999999999999999998764
Q ss_pred --CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044044 318 --GV-QPDVVTFSVIMDELCKNGKMDKASRLLELMIWR------GVNP-NTYTYNTLIDGYCLTDKIDHARKLFVSMESN 387 (508)
Q Consensus 318 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (508)
+. +.....+..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 223457888889999999999999999998764 2222 3557888889999999999999999988764
Q ss_pred ------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHh-------HHHHHHHHHHhcCCHHH
Q 044044 388 ------G-CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK-------GIKPTVV-------TYNTLFLGLFEIHQVER 446 (508)
Q Consensus 388 ------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~g~~~~ 446 (508)
+ .+....++..+..+|...|++++|...++++.+. ...+... .+..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 1 1223557888999999999999999999998863 1111111 12222233334445555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 447 ALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
+...++..... .+.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 263 a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 263 YGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666665543 233566788999999999999999999999875
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.4e-13 Score=125.49 Aligned_cols=176 Identities=14% Similarity=0.049 Sum_probs=125.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc-------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-Cc
Q 044044 176 NAVTFTSLIKGLCAESRIMEAAALFTKHRVF-------ACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF-GV 247 (508)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 247 (508)
+..++..+...+...|++++|+.+++++... ..+....++..+...+...|++++|+..++++....... +.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456677777778888888888888777653 223345677888888889999999999888877641000 00
Q ss_pred cccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 044044 248 VCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE------NI-NPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ--- 317 (508)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 317 (508)
..+.....+..+...+...|++++|.+.++++.+. +. +.....+..+...+...|++++|+++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 01334668888999999999999999999988753 11 123456777888888889999999888888764
Q ss_pred ---CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 318 ---GVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 318 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
+..| ...++..+..++...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 234667777788888888888888887765
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.50 E-value=8.4e-12 Score=117.14 Aligned_cols=232 Identities=13% Similarity=-0.026 Sum_probs=176.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---CC-CHH
Q 044044 256 YNTIIDGLCKEGFVDKAKELFLKMKDENI-NP----DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQG--V---QP-DVV 324 (508)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~---~~-~~~ 324 (508)
+......+...|++++|...|+++.+... .+ ....+..+...|...|+++.|...+++..+.. . .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34456667889999999999999876411 12 24567888899999999999999999887531 1 11 244
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWR----GVN-PNTYTYNTLIDGYCLTDKIDHARKLFVSMES-----NGCMHDVV 394 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 394 (508)
+++.+..+|...|++++|...++++++. +.. ....++..+..+|...|++++|.+.+++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 7788889999999999999999988763 111 1245678888999999999999999999887 43 33477
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSKGI----KPTVVTYNTLFLGLFEIHQ---VERALKLFDEMRRNHVAA-DTYTY 466 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~ 466 (508)
++..+...+.+.|++++|...+++..+... +.....+..+...+...++ +++|+.++++. +..+ ....+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 888999999999999999999999887521 1123355666677778888 77777777762 2222 23466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
..+...|...|++++|...|++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999999999874
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=3.6e-11 Score=112.63 Aligned_cols=298 Identities=12% Similarity=0.023 Sum_probs=166.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHh-----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH--
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDVF-----TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT-- 253 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-- 253 (508)
......+...|++++|...+++..... +.+.. +++.+...+...|++++|...+++...... ...+.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~ 91 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR-----QHDVWHY 91 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-----hcCcHHH
Confidence 334445556777777777777766542 32332 344555666677777777777777766431 11111
Q ss_pred --hHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C-
Q 044044 254 --VTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN--P-DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ--P- 321 (508)
Q Consensus 254 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~- 321 (508)
.++..+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++....... +
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 12445666677777777777777766542 111 1 1234455666667777777777777776654211 1
Q ss_pred -CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHH-----HHHHHHHcCCCHHHHHHHHHHHHhCCCCC---
Q 044044 322 -DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN-TYTYN-----TLIDGYCLTDKIDHARKLFVSMESNGCMH--- 391 (508)
Q Consensus 322 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 391 (508)
....+..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 123455666667777777777777776654311111 11111 22233566777777777777665543111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLYSEMLSK----GIKPTV-VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTY 466 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (508)
....+..+...+...|++++|...+++.... |..++. .++..+..++...|+.++|...+++..+....
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------ 325 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------ 325 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------
Confidence 1224555666677777777777777766542 211122 24555666677777777777777776653100
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
...+..+...| +....+++.+...
T Consensus 326 ~g~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 326 TGFISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HCCCHHHHTTH--HHHHHHHHHHHHT
T ss_pred ccHHHHHHHcc--HHHHHHHHHHHhC
Confidence 11223344444 4556666666543
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=1e-11 Score=116.62 Aligned_cols=302 Identities=11% Similarity=-0.022 Sum_probs=184.1
Q ss_pred HhcCChhHHHHHHHHHHhCC--CCCC--HHhHHHHHHH--HHhcCCcchHH---------HHHHHHHhCCCCCCH----H
Q 044044 118 AKNKHYDTVLSLFKRLNSAG--LFPD--IYTHSILINC--FCKMGRVSHGF---------VVLGRILRSCFTPNA----V 178 (508)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~l~~~--~~~~g~~~~a~---------~~~~~~~~~~~~~~~----~ 178 (508)
...+++++|..+++++.+.. ...| ...|-.++.. ..-.+.+..+. ..++.+.....+.+. .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 67899999999998875421 2223 3333444332 12223344444 666665432111111 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH
Q 044044 179 TFTSLIKGLCAESRIMEAAALFTKHRVFAC-EPD----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT 253 (508)
Q Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (508)
.+......+...|++++|+..|++...... .++ ..++..+...|...|++++|+..+++........+.......
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 233445567788999999999999875421 122 457888999999999999999999988764211000001124
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHH
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN-PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPDVV 324 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 324 (508)
.+++.+..+|...|++++|.+.|++..+. +.. ....++..+...|...|++++|+..+++..+. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 57788899999999999999999887652 111 11345667777888888888888888877661 1222355
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CC-CHHhHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGV---NP-NTYTYNTLIDGYCLTDK---IDHARKLFVSMESNGCMHDVVSYN 397 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~ 397 (508)
++..+..++.+.|++++|...+++..+... .+ ....+..+...|...++ +.+|...+++... .+.....+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~ 340 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHH
Confidence 666777777778888888887777766421 11 13344555555666666 5555555554211 011223445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
.+...|...|++++|...|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666677777777776666554
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=4.8e-11 Score=111.79 Aligned_cols=305 Identities=12% Similarity=0.012 Sum_probs=206.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-Hhh----H
Q 044044 145 HSILINCFCKMGRVSHGFVVLGRILRSCFTPNAV----TFTSLIKGLCAESRIMEAAALFTKHRVFACEPD-VFT----Y 215 (508)
Q Consensus 145 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~----~ 215 (508)
.......+...|++++|...+++.+......+.. +++.+...+...|++++|...+++......... ... +
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556678899999999999988764332322 456677788889999999999999877532222 221 4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccC-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC--C--Chhh
Q 044044 216 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP-NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENIN--P--DVVT 290 (508)
Q Consensus 216 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~--~~~~ 290 (508)
..+...+...|++++|...+++........+....| ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 567788889999999999999999865322110002 2345667888889999999999999988754221 1 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHhH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD--VVTFS----VIMDELCKNGKMDKASRLLELMIWRGVNPN---TYTY 361 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 361 (508)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77778888899999999999998875421111 11111 233447789999999999988875432211 2345
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESN----GCMHDV-VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFL 436 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 436 (508)
..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++...... . .....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHH
Confidence 67778889999999999999887543 211122 2566677888899999999999999887521 1 11222
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 044044 437 GLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 333444 5566666666654
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=6.5e-12 Score=126.15 Aligned_cols=166 Identities=12% Similarity=0.054 Sum_probs=139.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 185 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (508)
+..+|+.+..++.+.|++++|++.|++.++.. +-+...|..+..++.+.|++++|++.|+++++.. +.+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 67788899999999999999999999988763 4467788889999999999999999999988764 346778888999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 186 GLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
+|...|++++|++.|++..+.. +.+..+|+.+..+|.+.|++++|++.|++..+.+ +.+...+..++.++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhhhHHHh
Confidence 9999999999999999988774 4467888999999999999999999999988864 4457788889999999
Q ss_pred cCCHHHHHHHHHHHhh
Q 044044 266 EGFVDKAKELFLKMKD 281 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~ 281 (508)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999888887654
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=1.7e-11 Score=123.21 Aligned_cols=163 Identities=12% Similarity=0.016 Sum_probs=82.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..++.+..++.+.|++++|.+.|+++++... -+...+..+..+|.+.|++++|++.|++.++.+ +.+...|..+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445555555555555555555555554421 134455555555555555555555555555443 33445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEAL 483 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 483 (508)
...|++++|++.|+++++.... +...|..+..+|...|++++|++.|++..+.. +-+...|..+..+|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555555554221 34455555555555555555555555555432 123445555555555555555555
Q ss_pred HHHHHHH
Q 044044 484 ELFRAIR 490 (508)
Q Consensus 484 ~~~~~m~ 490 (508)
+.+++++
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=4.5e-11 Score=99.48 Aligned_cols=163 Identities=15% Similarity=0.069 Sum_probs=109.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44455556666666666666666665442 2245566666667777777777777777766553 445666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 484 (508)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776653 2356666777777777777777777777777653 3356677777777777788888887
Q ss_pred HHHHHHH
Q 044044 485 LFRAIRD 491 (508)
Q Consensus 485 ~~~~m~~ 491 (508)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=3.6e-11 Score=100.05 Aligned_cols=165 Identities=18% Similarity=0.054 Sum_probs=125.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 044044 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGL 187 (508)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (508)
..+..++..+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777788888888888888877653 4466777778888888888888888888877653 34567777788888
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHcC
Confidence 88888888888888877664 4466777788888888888888888888877754 345677777888888888
Q ss_pred CHHHHHHHHHHHhhC
Q 044044 268 FVDKAKELFLKMKDE 282 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~ 282 (508)
++++|.+.++++.+.
T Consensus 159 ~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 159 RHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 888888888777653
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=1.2e-10 Score=100.77 Aligned_cols=200 Identities=11% Similarity=0.001 Sum_probs=157.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 044044 286 PDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLI 365 (508)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (508)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...++..++.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888888999999999999999999998754367778878999999999999999999999977432 577888999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHH
Q 044044 366 DGYCLTDKIDHARKLFVSMESNGCMHDV-------VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT---VVTYNTLF 435 (508)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 435 (508)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|+++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998874 4455 55888888999999999999999999986 444 46777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHH
Q 044044 436 LGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
.++... +...++++...+ ..+...|.... ....|.+++|+..|++..+. .|+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 777654 444556666553 23455554443 34567789999999999875 45543
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=5.5e-12 Score=112.99 Aligned_cols=235 Identities=15% Similarity=0.052 Sum_probs=162.5
Q ss_pred CCCCChHHHHHHHHHhHHcC-----CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHHhHHHH
Q 044044 82 INLITPNEALCIFDYMLRMH-----PS-PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA------GL-FPDIYTHSIL 148 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 148 (508)
...|+++.|+..|+++++.. +. +....++..+...+...|++++|+..++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34567777877777776631 11 135678999999999999999999999998754 21 2245678889
Q ss_pred HHHHHhcCCcchHHHHHHHHHhC------C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc------C-CCCCHhh
Q 044044 149 INCFCKMGRVSHGFVVLGRILRS------C-FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF------A-CEPDVFT 214 (508)
Q Consensus 149 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 214 (508)
...+...|++++|...++++... . .+....++..+...+...|++++|+..+++.... + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1234567888999999999999999999998765 1 1223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCccccCCHhHHHHHHHHHHccC------CHHHHHHHHHHHhhCCCCC
Q 044044 215 YNTLINGLCRTGHTIVALNLFEEMANGNGE--FGVVCKPNTVTYNTIIDGLCKEG------FVDKAKELFLKMKDENINP 286 (508)
Q Consensus 215 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~~~~ 286 (508)
+..+...+...|++++|+.+++++...... .+.........|..+...+...+ .+..+...++...... +.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS-PT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC-HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC-HH
Confidence 889999999999999999999998864100 00001122334444444443322 3455555555555452 22
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 287 DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
...++..+...|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999988753
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=2.1e-10 Score=99.24 Aligned_cols=208 Identities=10% Similarity=-0.049 Sum_probs=160.1
Q ss_pred cCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVI 329 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (508)
+.|+..+......+...|++++|.+.|++..+....++...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346688899999999999999999999999887543677788889999999999999999999999864 3356688899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 044044 330 MDELCKNGKMDKASRLLELMIWRGVNPNT-------YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH--DVVSYNTLI 400 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 400 (508)
..++...|++++|...+++.++.... +. ..|..+...+...|++++|.+.|+++.+.+ +. +...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 99999999999999999999987432 44 457888889999999999999999999874 33 456778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044044 401 NWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNF 469 (508)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 469 (508)
.+|...| ..+++++...+. .+...|.... ....+.+++|+..+++..+.. +.+..+...+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 8876544 344555555432 2344444433 345567899999999999863 2244444443
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=1e-10 Score=105.28 Aligned_cols=212 Identities=13% Similarity=0.054 Sum_probs=150.9
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCChhHH
Q 044044 268 FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ----GVQPD-VVTFSVIMDELCKNGKMDKA 342 (508)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 342 (508)
++++|...|++. ...|...|++++|...|++..+. |.+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 33567789999999888877653 22222 45788888889999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHhHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 044044 343 SRLLELMIWRGVN-PN----TYTYNTLIDGYCLT-DKIDHARKLFVSMESNGCM-HD----VVSYNTLINWYCKNKDVEE 411 (508)
Q Consensus 343 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~ 411 (508)
...+++.++.... .+ ..+++.+..+|... |++++|+..|++..+.... .+ ..+++.++..+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988887754211 01 35778888889886 9999999999888764210 01 3568888999999999999
Q ss_pred HHHHHHHHHHCCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHH--hcC
Q 044044 412 ALSLYSEMLSKGIKPTV------VTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD------TYTYNNFIDGLC--KSG 477 (508)
Q Consensus 412 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~--~~g 477 (508)
|+..|++..+....... ..|..+..++...|++++|+..+++..+. .|+ ...+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999886433222 15677888899999999999999988764 222 123445566664 456
Q ss_pred CHHHHHHHHHHHHHcCCccCH
Q 044044 478 FVLEALELFRAIRDSKYELNI 498 (508)
Q Consensus 478 ~~~~A~~~~~~m~~~g~~p~~ 498 (508)
++++|+..|+++.. +.|+.
T Consensus 255 ~~~~A~~~~~~~~~--l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR--LDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSC--CCHHH
T ss_pred HHHHHHHHhccCCc--cHHHH
Confidence 78888888877753 44544
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=2.4e-11 Score=108.81 Aligned_cols=227 Identities=13% Similarity=0.027 Sum_probs=157.9
Q ss_pred HccCCHHHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHhHHHH
Q 044044 264 CKEGFVDKAKELFLKMKDE-------NINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQ------GVQP-DVVTFSVI 329 (508)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 329 (508)
...|++++|...|++..+. ..+....++..+...+...|++++|+..++++.+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777776542 22224667888999999999999999999998864 2222 34578888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc------CC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC------C-CCCCHHH
Q 044044 330 MDELCKNGKMDKASRLLELMIWR------GV-NPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN------G-CMHDVVS 395 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 395 (508)
...+...|++++|...+.++.+. .. +....++..+...|...|++++|...++++.+. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 11 223667888899999999999999999998764 1 1224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-HhHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCC
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSK-------GIKPT-VVTYNTLFLGLFEIHQ------VERALKLFDEMRRNHVAA 461 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~ 461 (508)
+..+..+|...|++++|...++++.+. ...+. ...+..+.......+. +..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998863 11222 2233333333333332 2222222222111 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 462 DTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 462 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
....+..+...|...|++++|..+|++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345788899999999999999999999875
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.32 E-value=5.2e-09 Score=100.90 Aligned_cols=362 Identities=12% Similarity=0.015 Sum_probs=225.2
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-cchHHHHH
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR-VSHGFVVL 165 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~ 165 (508)
++.|+.+|+.++...|. |+++.+..+|++.... .|+...|...+....+.+. .+....+|
T Consensus 11 i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred hHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 66778888877776543 6788888888888774 5688888887777666653 35566777
Q ss_pred HHHHhC-CC-CCCHHhHHHHHHHHH----hcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH-------------hcC
Q 044044 166 GRILRS-CF-TPNAVTFTSLIKGLC----AESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC-------------RTG 226 (508)
Q Consensus 166 ~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g 226 (508)
+.++.. |. ..+...|...+..+. ..++.+.+.++|++........-...|......-. ..+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 776653 42 335667777776544 23567778888888776311111112222211110 112
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC--C-----HHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 044044 227 HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG--F-----VDKAKELFLKMKDENINPDVVTYTSVIRGFC 299 (508)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (508)
.+..|..+++.+...- ...+...|...+..-...+ - .+.+..+|+++... .+.+...|...+..+.
T Consensus 152 ~y~~ar~~y~~~~~~~------~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLI------RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHH------HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 3334455555544321 0113446666655533221 1 34567889998875 3446778888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC---------CCC---CHHhHHHHHHH
Q 044044 300 YANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRG---------VNP---NTYTYNTLIDG 367 (508)
Q Consensus 300 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~ 367 (508)
+.|+.+.|..+|++.... +.+...+. .|....+.++. ++.+.+.- ..+ ...+|...+..
T Consensus 225 ~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 999999999999999987 33333222 23222222222 22222210 001 12456666777
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 044044 368 YCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK-NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVER 446 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 446 (508)
+.+.++.+.|..+|+++ +.. ..+...|...+..-.. .++.+.|..+|+..++.... +...+...+......|+.+.
T Consensus 296 ~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 77788899999999999 321 2344555433333222 33699999999999886322 34556667777788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 447 ALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
|..+|+.+. .....|...+..-...|+.+.+.++++++..
T Consensus 373 aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 373 ARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999873 2578899888888888999999999988874
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=5.6e-10 Score=100.45 Aligned_cols=205 Identities=9% Similarity=-0.020 Sum_probs=138.1
Q ss_pred HHHHHHHHhHHcCCCCCCcccHHHHHHHHHhc--C-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHH
Q 044044 89 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKN--K-HYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVL 165 (508)
Q Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 165 (508)
+|.+++.++.+.-+. +...| .+ .+. + ++++|...|++. ...+...|++++|...|
T Consensus 3 ~a~~~~~~a~k~~~~--~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 3 DPVELLKRAEKKGVP--SSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CHHHHHHHHHHHSSC--CCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred cHHHHHHHHHHHhCc--CCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 456666666655432 22222 22 222 2 477777777776 33566778888888888
Q ss_pred HHHHhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CC----HhhHHHHHHHHHhc-CChHHHHHH
Q 044044 166 GRILRS----CFTP-NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE-PD----VFTYNTLINGLCRT-GHTIVALNL 234 (508)
Q Consensus 166 ~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-g~~~~A~~~ 234 (508)
++.... |.++ ...+|+.+..+|.+.|++++|+..|++....... .+ ..+++.+...|... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 777653 2111 1457888888888899999999888887654211 11 35788899999996 999999999
Q ss_pred HHHHHhCCCCCCccccC-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChh------hHHHHHHHHHhcCCHHHH
Q 044044 235 FEEMANGNGEFGVVCKP-NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVV------TYTSVIRGFCYANDWNEA 307 (508)
Q Consensus 235 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a 307 (508)
|++.....+..+ ... ...++..+...+.+.|++++|...|++..+........ .|..+..++...|++++|
T Consensus 141 ~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 141 YELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999887431000 000 13567888899999999999999999988764332221 456677778888888888
Q ss_pred HHHHHHHHHc
Q 044044 308 KRLFIEMMDQ 317 (508)
Q Consensus 308 ~~~~~~~~~~ 317 (508)
+..|++..+.
T Consensus 219 ~~~~~~al~l 228 (292)
T 1qqe_A 219 ARTLQEGQSE 228 (292)
T ss_dssp HHHHHGGGCC
T ss_pred HHHHHHHHhh
Confidence 8888887653
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=7.5e-09 Score=91.29 Aligned_cols=246 Identities=10% Similarity=0.010 Sum_probs=139.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 044044 114 FGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRI 193 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (508)
++-..-.|++..++.-...+.. ..+......+.+++...|+++.. ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 3444567888888774433321 22233444455777777777642 11233333444333333 211
Q ss_pred HHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHH
Q 044044 194 MEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAK 273 (508)
Q Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 273 (508)
|+..|++....+ .++..++..+..++...|++++|++++.+....+. ..-+...+..++.++.+.|+.+.|.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 667777666544 34455556677777777777777777777765541 0135566677777777777777777
Q ss_pred HHHHHHhhCCCCC-----ChhhHHHHHHHHHh--cC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 044044 274 ELFLKMKDENINP-----DVVTYTSVIRGFCY--AN--DWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASR 344 (508)
Q Consensus 274 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~--~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 344 (508)
+.+++|.+. .| +..+...++.++.. .| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+
T Consensus 157 k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 157 TIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 777777664 33 23444455544222 23 677777777776554 3443333344446777777777777
Q ss_pred HHHHHHHcC---------CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044044 345 LLELMIWRG---------VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNG 388 (508)
Q Consensus 345 ~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (508)
.++.+.+.. -+.+..++..+|......|+ +|.+++.++.+..
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 776554421 02245555444444444555 6667777776653
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=9.7e-11 Score=118.26 Aligned_cols=174 Identities=10% Similarity=-0.077 Sum_probs=148.6
Q ss_pred CCCCChHHHHHHHHHhH--------HcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 82 INLITPNEALCIFDYML--------RMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
...|++++|++.|++++ +.+|. +...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 46789999999999999 76666 88899999999999999999999999998864 557888999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALN 233 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 233 (508)
..|++++|++.|+++++.. +.+...+..+..++.+.|++++ ++.|++....+ +.+...|..+..++.+.|++++|++
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998874 3467888999999999999999 99999998875 4467899999999999999999999
Q ss_pred HHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCC
Q 044044 234 LFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGF 268 (508)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (508)
.|+++.+.+ +.+...+..+..++...++
T Consensus 556 ~~~~al~l~-------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS-------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS-------TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC-------cccHHHHHHHHHHHHccCC
Confidence 999998864 3346778888888766554
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.23 E-value=2.7e-09 Score=90.82 Aligned_cols=177 Identities=14% Similarity=0.052 Sum_probs=89.8
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCC----CHHHHHHHHH
Q 044044 307 AKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTD----KIDHARKLFV 382 (508)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 382 (508)
|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + +.++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444433 34444445555555555555555555555443 34444445555544 4 5555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHh----cCCHHHHHHHHHH
Q 044044 383 SMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIK-PTVVTYNTLFLGLFE----IHQVERALKLFDE 453 (508)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 453 (508)
+..+.+ +...+..+...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .+++++|+++|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555443 44455555555554 55566666666555554321 014445555555555 5556666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCCc
Q 044044 454 MRRNHVAADTYTYNNFIDGLCKS-G-----FVLEALELFRAIRDSKYE 495 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~~ 495 (508)
..+. ..+...+..|...|... | ++++|..+|++..+.|..
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 5554 12333444455544432 2 566666666666655543
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=1.2e-08 Score=90.10 Aligned_cols=179 Identities=9% Similarity=0.044 Sum_probs=92.4
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044044 272 AKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV-QPDVVTFSVIMDELCKNGKMDKASRLLELMI 350 (508)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 350 (508)
|...|++....+ .++...+..+..++...|++++|++++.+.+..+- .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 23344444555666666666666666666554432 1234455555666666666666666666665
Q ss_pred HcCCCC-----CHHhHHHHHHHH--Hc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 351 WRGVNP-----NTYTYNTLIDGY--CL--TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 351 ~~~~~~-----~~~~~~~l~~~~--~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+. .| +..+...++.++ .. .++..+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 33 133333333332 21 22566666666666544 34322223333356666666666666665443
Q ss_pred CC-----C----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 422 KG-----I----KPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 422 ~~-----~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.. . +-+..++..++......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 0 1244444445444455555 566666666664
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=2e-09 Score=84.01 Aligned_cols=130 Identities=16% Similarity=0.217 Sum_probs=89.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.+..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++.+.+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 35556666667777777777777766553 34566666777777777777777777777766532 24556667777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 440 EIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
..|++++|.++++++.+.. +.+...+..+...+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777653 235666777777777788888888877777653
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=1.6e-10 Score=98.19 Aligned_cols=168 Identities=13% Similarity=0.038 Sum_probs=131.5
Q ss_pred CCCCCCChHHHHHHHHHhHHcCCCCCCcccHHH----------------HHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 044044 80 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNI----------------LFGCLAKNKHYDTVLSLFKRLNSAGLFPDIY 143 (508)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 143 (508)
.++..|++++|+..|+++++..|. +...|.. +..++.+.|++++|+..|++..+.. +.+..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 89 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVD 89 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
Confidence 344678999999999999999887 7778888 9999999999999999999999874 55788
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHhhhcCCCCCHhhHHHHHHH
Q 044044 144 THSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR--IMEAAALFTKHRVFACEPDVFTYNTLING 221 (508)
Q Consensus 144 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 221 (508)
.+..+..++...|++++|+..|+++++.. +.+..++..+...|...|+ ...+...++.... ..|....+.....+
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHH
Confidence 99999999999999999999999999874 4467888888888866554 4455666666542 23333455566777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHH
Q 044044 222 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIID 261 (508)
Q Consensus 222 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (508)
+...|++++|+..|++..+. .|+......+..
T Consensus 167 ~~~~~~~~~A~~~~~~al~l--------~P~~~~~~~l~~ 198 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILR--------FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTT--------SCCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 78899999999999999985 466555444433
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.18 E-value=1.1e-08 Score=91.34 Aligned_cols=220 Identities=11% Similarity=0.002 Sum_probs=174.1
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH----Hhc---C
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK--HYDTVLSLFKRLNSAGLFPDIYTHSILINCF----CKM---G 156 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 156 (508)
..++|+.+++.++..+|. +..+|+.-..++...| ++++++++++.+.... +-+..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 447899999999999998 8999999999999999 9999999999998864 44566676655555 555 7
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCC------h
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIM--EAAALFTKHRVFACEPDVFTYNTLINGLCRTGH------T 228 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 228 (508)
++++++.+++++++.. +-+..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|..+|+.....+.+.|. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 8899999999998864 457788888877788888888 9999999998876 4578888887777777776 8
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHH-HHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHH
Q 044044 229 IVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDK-AKELFLKMKDEN--INPDVVTYTSVIRGFCYANDWN 305 (508)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 305 (508)
+++++.++++...+ +-|...|+.+...+.+.|+... +..+.+++.+.+ -..+...+..+...+.+.|+.+
T Consensus 203 ~eEl~~~~~aI~~~-------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 203 DEELNYVKDKIVKC-------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC-------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88999999888875 5678889888888888877444 555666665432 1335677778888888888888
Q ss_pred HHHHHHHHHHHc
Q 044044 306 EAKRLFIEMMDQ 317 (508)
Q Consensus 306 ~a~~~~~~~~~~ 317 (508)
+|.++++.+.+.
T Consensus 276 ~A~~~~~~l~~~ 287 (306)
T 3dra_A 276 ESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 888888888763
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=1.6e-09 Score=92.07 Aligned_cols=111 Identities=12% Similarity=0.077 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH----------------HHHHHHhcCChhHHHHHHHHHHHcC
Q 044044 290 TYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSV----------------IMDELCKNGKMDKASRLLELMIWRG 353 (508)
Q Consensus 290 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 353 (508)
.+......+...|++++|+..|++..+.. +.+...+.. +..++.+.|++++|...++++++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34444556667788888888888877652 112333433 3444444444444444444444432
Q ss_pred CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 354 VNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
. .+...+..+..++...|++++|...|+++.+.. +.+...|..+..+|
T Consensus 85 p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 85 P-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 1 133444444444444444444444444444432 23344444444443
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=6.3e-09 Score=88.54 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=145.6
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC----ChhHHHHH
Q 044044 270 DKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNG----KMDKASRL 345 (508)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 345 (508)
.+|.++|++..+.| ++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45778888888875 77888888999999999999999999998876 56777778877777 6 89999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 044044 346 LELMIWRGVNPNTYTYNTLIDGYCL----TDKIDHARKLFVSMESNGCM-HDVVSYNTLINWYCK----NKDVEEALSLY 416 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~ 416 (508)
|++..+.| +...+..|...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998775 67788888888887 88999999999999887511 127788889999988 88999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 044044 417 SEMLSKGIKPTVVTYNTLFLGLFEI-H-----QVERALKLFDEMRRNHV 459 (508)
Q Consensus 417 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 459 (508)
++..+. ..+...+..|...|... | +.++|.++|++..+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999886 22455677788877653 3 89999999999988763
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=1.5e-09 Score=96.00 Aligned_cols=171 Identities=9% Similarity=-0.056 Sum_probs=119.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCCHHhH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD---IYTHSILINCFCKMGRVSHGFVVLGRILRSCF--TPNAVTF 180 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~ 180 (508)
+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|+..|+++++... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 55566666777777777777877777777653 223 55667777777777777777777777776522 1123456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHhhhcCCCCCHhhH-----------------HHHHHHHHhcCChHHHHHHH
Q 044044 181 TSLIKGLCA--------ESRIMEAAALFTKHRVFACEPDVFTY-----------------NTLINGLCRTGHTIVALNLF 235 (508)
Q Consensus 181 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 235 (508)
..+..++.. .|++++|+..|+++.... +.+.... ..+...|.+.|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 666667766 777888888887777653 1122233 56788899999999999999
Q ss_pred HHHHhCCCCCCccccCCHhHHHHHHHHHHcc----------CCHHHHHHHHHHHhhC
Q 044044 236 EEMANGNGEFGVVCKPNTVTYNTIIDGLCKE----------GFVDKAKELFLKMKDE 282 (508)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 282 (508)
+++....+. .+.....+..+..+|... |++++|...|+++.+.
T Consensus 172 ~~~l~~~p~----~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPD----TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTT----STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC----CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999886521 111345777788888766 8889999999998875
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=1.9e-09 Score=95.22 Aligned_cols=188 Identities=11% Similarity=0.030 Sum_probs=122.2
Q ss_pred cCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHH
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD---VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGV--QPDVV 324 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~ 324 (508)
+.+...+..+...+.+.|++++|...|+++.+... .+ ...+..+..++.+.|++++|+..|+++.+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 44566777778888888888888888888877532 12 45677777888888888888888888877521 11234
Q ss_pred hHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044044 325 TFSVIMDELCK--------NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSY 396 (508)
Q Consensus 325 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (508)
.+..+..++.. .|++++|...|+++++.... +......+.. +..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 56666777777 78888888888887766321 2222211111 1111000 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGIKP--TVVTYNTLFLGLFEI----------HQVERALKLFDEMRRN 457 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 457 (508)
..+...|...|++++|+..|+++++..+.. ....+..+..+|... |++++|+..++++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 566777888888888888888887753221 234666777777755 7888888888888875
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=2.4e-10 Score=91.36 Aligned_cols=146 Identities=10% Similarity=-0.053 Sum_probs=120.4
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG 156 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 156 (508)
.|..+.+.|++++|+..+..+....|. +...+..+...|.+.|++++|++.|++.++.. +-+...|..+..++.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 355667788999999999999887766 67788889999999999999999999998864 557889999999999999
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH-HHHhhhcCCCCCHhhHHHHHHHHHhcCC
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAAL-FTKHRVFACEPDVFTYNTLINGLCRTGH 227 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 227 (508)
++++|+..|+++++.. +.+..++..+...|.+.|++++|.+. +++..+.. +.+..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999998874 34678899999999999999877665 58877764 4467788887777777765
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.15 E-value=4.4e-08 Score=94.41 Aligned_cols=345 Identities=9% Similarity=-0.034 Sum_probs=222.3
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CC-CCCHHhHHHHHHHHH----hcCC
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH-YDTVLSLFKRLNSA-GL-FPDIYTHSILINCFC----KMGR 157 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~ 157 (508)
++++.+..+|+.++... |+...|...+....+.++ .+....+|+.+... |. ..+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 68999999999999865 488899999988877763 45678888887753 42 347788888887654 3467
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------------cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh
Q 044044 158 VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA-------------ESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR 224 (508)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (508)
.+.+..+|++++......-...|......-.. .+.+..|..+++.+...-...+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88899999999875222112233322221111 12233344444443321001133456555554332
Q ss_pred cC--C-----hHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 044044 225 TG--H-----TIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRG 297 (508)
Q Consensus 225 ~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (508)
.+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... +.+...|..
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~---- 251 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY---- 251 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----
Confidence 21 1 345678999988753 556788999999999999999999999999987 333333322
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---------CCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 044044 298 FCYANDWNEAKRLFIEMMDQG---------VQP---DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLI 365 (508)
Q Consensus 298 ~~~~g~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (508)
|....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.+ +. ...+...|...+
T Consensus 252 y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A 326 (493)
T 2uy1_A 252 YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCA 326 (493)
T ss_dssp HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHH
T ss_pred HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHH
Confidence 2222111121 22222210 001 1245666677777788899999999999 32 223444554333
Q ss_pred HHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 044044 366 DGYCLTD-KIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQV 444 (508)
Q Consensus 366 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 444 (508)
..-...+ +.+.|..+|+...+.. +.+...|...+......|+.+.|..+|+++. .....|...+.--...|+.
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCH
Confidence 3333333 6999999999988763 4456667777888888999999999999973 2567788888777888999
Q ss_pred HHHHHHHHHHHH
Q 044044 445 ERALKLFDEMRR 456 (508)
Q Consensus 445 ~~a~~~~~~~~~ 456 (508)
+.+.++++++.+
T Consensus 401 ~~~r~v~~~~~~ 412 (493)
T 2uy1_A 401 ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988774
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.14 E-value=6.8e-10 Score=112.10 Aligned_cols=173 Identities=8% Similarity=-0.077 Sum_probs=128.5
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 118 AKNKHYDTVLSLFKRLN--------SAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA 189 (508)
Q Consensus 118 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (508)
...|++++|++.++++. +.. +.+...+..+..++.+.|++++|++.++++++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788888988888887 432 4456677778888888888888888888887753 3466778888888888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCH
Q 044044 190 ESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFV 269 (508)
Q Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (508)
.|++++|+..|++..... +.+...|..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCH
Confidence 888888888888887764 3356778888888888888888 88888888764 44567788888888888888
Q ss_pred HHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCC
Q 044044 270 DKAKELFLKMKDENINPD-VVTYTSVIRGFCYAND 303 (508)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 303 (508)
++|.+.|+++.+. .|+ ...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 8888888887765 333 4566666666655444
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.11 E-value=9.9e-08 Score=85.08 Aligned_cols=219 Identities=9% Similarity=-0.034 Sum_probs=135.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHH----Hh
Q 044044 227 HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG--FVDKAKELFLKMKDENINPDVVTYTSVIRGF----CY 300 (508)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 300 (508)
..++|+++++.+...+ +.+...|+.-..++...| ++++++++++.+.....+ +..+|+.-...+ ..
T Consensus 48 ~s~~aL~~t~~~L~~n-------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 48 YSERALHITELGINEL-------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp CSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 3457888888888764 345667777777777777 888888888888775322 445555433333 33
Q ss_pred c---CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCC--
Q 044044 301 A---NDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD--KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDK-- 373 (508)
Q Consensus 301 ~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 373 (508)
. +++++++.+++.+.+.. +-+...|+.-..++.+.|.++ ++++.++.+++.+.. |...|+.-...+...++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 3 66777777777777653 446666666666666777766 777777777766543 56666665555555555
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCCHHH
Q 044044 374 ----IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEE-ALSLYSEMLSKG--IKPTVVTYNTLFLGLFEIHQVER 446 (508)
Q Consensus 374 ----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 446 (508)
++++.+.+++++..+ +-|...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..++.++.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 666666666666554 5566666666666666665333 333444444322 12244555566666666666666
Q ss_pred HHHHHHHHHH
Q 044044 447 ALKLFDEMRR 456 (508)
Q Consensus 447 a~~~~~~~~~ 456 (508)
|+++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=5.2e-09 Score=81.55 Aligned_cols=126 Identities=13% Similarity=0.187 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
..+...+...|++++|+.+++++...+ +.+...+..+...+...|++++|..+++++.... +.+...+..+.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~ 76 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------CCchHHHHHHH
Confidence 334444444444444444444444332 2233444444444444455555555554444432 22333444444
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 261 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMM 315 (508)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 315 (508)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444444444444331 1123344444444444444444444444443
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=2.9e-09 Score=96.53 Aligned_cols=227 Identities=12% Similarity=-0.006 Sum_probs=142.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 044044 224 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND 303 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (508)
..|++++|.+++++..+.. +.. .+...+++++|...|.++ ...|...|+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-------~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~ 51 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-------KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQ 51 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHc-------ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCC
Confidence 3567788888888776642 111 011146777777776654 335666778
Q ss_pred HHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--HHhHHHHHHHHHcCCC
Q 044044 304 WNEAKRLFIEMMDQ----GVQP-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGV---NPN--TYTYNTLIDGYCLTDK 373 (508)
Q Consensus 304 ~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~ 373 (508)
+++|...|.+..+. +... -..+|..+..+|...|++++|...+++.++... .+. ..++..+...|.. |+
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~ 130 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD 130 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC
Confidence 88877777766543 1111 123667777778888888888888877664311 111 3466777778877 88
Q ss_pred HHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCC
Q 044044 374 IDHARKLFVSMESNGCMH-----DVVSYNTLINWYCKNKDVEEALSLYSEMLSK----GIKPT-VVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~ 443 (508)
+++|+..|++..+..... ...+++.+...|...|++++|+..|++.++. +..+. ..++..++.++...|+
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 888888888776531000 1456777888888888999988888887763 11111 2256666777777888
Q ss_pred HHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHHhcCCHHHHHH
Q 044044 444 VERALKLFDEMRRNHVAA-D---TYTYNNFIDGLCKSGFVLEALE 484 (508)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~ 484 (508)
+++|...|++.. ..... + ......++.++ ..|+.+.+.+
T Consensus 211 ~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999998888887 42110 1 12344455555 5677666555
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=1.3e-09 Score=89.90 Aligned_cols=165 Identities=11% Similarity=0.002 Sum_probs=101.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG 186 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (508)
...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|+..++++.... |+...+..+...
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence 3445556666677777777777777765542 3355666667777777777777777777665543 233332222211
Q ss_pred -HHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 187 -LCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 187 -~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
+...+...+|+..+++..... +.+...+..+...+...|++++|+..|+++....+ ...+...+..+..++..
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-----TTTTTHHHHHHHHHHHH
T ss_pred HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-----ccChHHHHHHHHHHHHH
Confidence 112223334677777766653 33567777777777778888888888877777542 11234567777777777
Q ss_pred cCCHHHHHHHHHHHh
Q 044044 266 EGFVDKAKELFLKMK 280 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~ 280 (508)
.|+.++|...|++..
T Consensus 157 ~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 157 LGQGNAIASKYRRQL 171 (176)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 777777777777654
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.10 E-value=1.7e-09 Score=107.34 Aligned_cols=154 Identities=12% Similarity=-0.022 Sum_probs=121.9
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFV 163 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 163 (508)
.|++++|+..|+++++..|. +...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 36889999999999998887 88899999999999999999999999999874 4568889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 044044 164 VLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT---GHTIVALNLFEEMAN 240 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 240 (508)
.+++.++.. +.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+... |++++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999998874 4467889999999999999999999999998875 44678899999999999 999999999999998
Q ss_pred CC
Q 044044 241 GN 242 (508)
Q Consensus 241 ~~ 242 (508)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 76
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.08 E-value=3e-09 Score=96.39 Aligned_cols=205 Identities=13% Similarity=0.023 Sum_probs=119.1
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGF 162 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 162 (508)
+.|++++|.++++++.+..+. .. +...++++.|...|+++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~--~~---------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT--SF---------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC--CS---------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc--cc---------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 345777788888777665432 10 11146677777776654 33556667777777
Q ss_pred HHHHHHHhC----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCC---CC--CHhhHHHHHHHHHhcCChHHHH
Q 044044 163 VVLGRILRS----CFT-PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFAC---EP--DVFTYNTLINGLCRTGHTIVAL 232 (508)
Q Consensus 163 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~ 232 (508)
..+.+.... +.. .-..+|+.+...|...|++++|+..|++...... .+ ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 777666542 100 0133566667777777777777777776544310 11 13456667777777 8888888
Q ss_pred HHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHhcCCHHHH
Q 044044 233 NLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NINPD-VVTYTSVIRGFCYANDWNEA 307 (508)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a 307 (508)
..|++........+. ......++..+...+.+.|++++|+..|++..+. +..+. ...+..+...+...|++++|
T Consensus 136 ~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEER-LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 888776653210000 0001346667777777777777777777776542 11111 12444555556666777777
Q ss_pred HHHHHHHH
Q 044044 308 KRLFIEMM 315 (508)
Q Consensus 308 ~~~~~~~~ 315 (508)
...|++..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77777666
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=8.9e-10 Score=90.86 Aligned_cols=154 Identities=14% Similarity=0.043 Sum_probs=124.3
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcCCcch
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINC-FCKMGRVSH 160 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 160 (508)
...|++++|+..|+++++..|. +...+..+..++...|++++|+..|+++.+.. |+...+..+... +...+....
T Consensus 17 ~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 17 LQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESP 92 (176)
T ss_dssp HHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccch
Confidence 3568999999999999999887 88999999999999999999999999987753 355443333222 223344556
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044044 161 GFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEP-DVFTYNTLINGLCRTGHTIVALNLFEEMA 239 (508)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 239 (508)
|...+++.++.. +.+...+..+...+...|++++|+..|+++......+ +...+..+..++...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 889999988763 3468889999999999999999999999998874332 35688999999999999999999999876
Q ss_pred h
Q 044044 240 N 240 (508)
Q Consensus 240 ~ 240 (508)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=3.9e-09 Score=94.53 Aligned_cols=166 Identities=13% Similarity=0.009 Sum_probs=98.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHH-HHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFT-SLI 184 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~ 184 (508)
+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44556666666666777777777777766543 3355566666666777777777777776665542 2332222 222
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHH
Q 044044 185 KGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC 264 (508)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (508)
..+...++.++|+..|++..... +.+...+..+...+...|++++|+..|+++...++. ..+...+..++..+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-----~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-----AADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----GGGGHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----cccchHHHHHHHHHH
Confidence 23445566666666666666553 335566666666777777777777777766665410 112456666666666
Q ss_pred ccCCHHHHHHHHHHHh
Q 044044 265 KEGFVDKAKELFLKMK 280 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~ 280 (508)
..|+.++|...|++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 6666666666665543
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=7.9e-10 Score=88.32 Aligned_cols=146 Identities=9% Similarity=-0.048 Sum_probs=117.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 113 LFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR 192 (508)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (508)
|...+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4455667889999999999987642 2234456778899999999999999999998874 4578899999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCCccccCCHhHHHHHHHHHHccCC
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNL-FEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGF 268 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (508)
+++|+..|++..+.. +.+..+|..+...|.+.|++++|.+. +++..+.+ |.+..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-------P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-------PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHhCc
Confidence 999999999999875 44688999999999999999887665 58887764 4567788888777777764
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=3.8e-08 Score=84.61 Aligned_cols=188 Identities=9% Similarity=-0.026 Sum_probs=116.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HhHH
Q 044044 287 DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-P-DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNT--YTYN 362 (508)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 362 (508)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|...|+.+++....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666677788889999999999998875311 1 1346777788888999999999999988876432111 2444
Q ss_pred HHHHHHHc------------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 044044 363 TLIDGYCL------------------TDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI 424 (508)
Q Consensus 363 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (508)
.+..++.. .|+.++|...|+++++.. +.+...+........ +...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~----------~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVF----------LKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHH----------HHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHH----------HHHHH-----
Confidence 44455543 344555555555555442 112211111100000 00000
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 425 KPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD--TYTYNNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
......+...+...|++++|+..|+++.+...... ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00113456778889999999999999987532211 2467788889999999999999999887653
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=8.1e-09 Score=92.47 Aligned_cols=167 Identities=14% Similarity=0.054 Sum_probs=117.3
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044044 320 QPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTL 399 (508)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (508)
+.+...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|...++++.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 33445566667777788888888888888777642 256677777788888888888888888776653 444333222
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 044044 400 -INWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAA-DTYTYNNFIDGLCKSG 477 (508)
Q Consensus 400 -~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 477 (508)
...+...++.++|+..+++..+..+ .+...+..+...+...|++++|+..|+++.+..... +...+..++..|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2335566777778888888777643 366777788888888888888888888887753221 2567778888888888
Q ss_pred CHHHHHHHHHHHH
Q 044044 478 FVLEALELFRAIR 490 (508)
Q Consensus 478 ~~~~A~~~~~~m~ 490 (508)
+.++|...|++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888877765
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=5.6e-08 Score=83.55 Aligned_cols=188 Identities=10% Similarity=-0.006 Sum_probs=130.0
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH-HhHH
Q 044044 252 NTVTYNTIIDGLCKEGFVDKAKELFLKMKDENIN-P-DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQ-PDV-VTFS 327 (508)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~-~~~~ 327 (508)
+...+..++..+.+.|++++|...|+++.+.... + ....+..+..++.+.|++++|+..|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556677888899999999999999999875322 1 1356788889999999999999999999986321 111 2444
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044044 328 VIMDELCK------------------NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGC 389 (508)
Q Consensus 328 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 389 (508)
.+..++.. .|++++|...|+.+++.... +...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 55555554 57899999999999976322 22222221110 00111111
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT--VVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
.....+...|.+.|++++|+..|+++++..+... ...+..+..++.+.|+.++|++.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123467778889999999999999988632211 2467888899999999999999999888764
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=1.2e-08 Score=101.10 Aligned_cols=155 Identities=9% Similarity=-0.075 Sum_probs=116.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHH
Q 044044 301 ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKL 380 (508)
Q Consensus 301 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (508)
.|++++|++.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887763 4457788888999999999999999999998764 23578888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 044044 381 FVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI---HQVERALKLFDEMRRN 457 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 457 (508)
+++..+.. +.+...+..+..+|...|++++|.+.++++.+... .+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988875 55788899999999999999999999999988643 3677888899999999 9999999999999886
Q ss_pred CC
Q 044044 458 HV 459 (508)
Q Consensus 458 ~~ 459 (508)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.98 E-value=6e-07 Score=80.86 Aligned_cols=172 Identities=10% Similarity=-0.008 Sum_probs=142.3
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-C-CcchHH
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM-G-RVSHGF 162 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~ 162 (508)
..++|+++++.++..+|. +..+|+.-..++...| .+++++.+++.+.... +-+..+|+.-..++... + ++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 457899999999999998 9999999999999888 5999999999999875 55778888888777776 7 889999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCC-------
Q 044044 163 VVLGRILRSCFTPNAVTFTSLIKGLCAESRIM--------EAAALFTKHRVFACEPDVFTYNTLINGLCRTGH------- 227 (508)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 227 (508)
++++++++.. +-|..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|..+|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 9999998764 447778877666666666666 9999999999876 5588899998888888876
Q ss_pred hHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCH
Q 044044 228 TIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFV 269 (508)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (508)
++++++.++++.... +-|...|+.+-..+.+.|+.
T Consensus 224 ~~eELe~~~~aI~~~-------P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-------PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCC
Confidence 689999999988875 56788898877777776653
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.91 E-value=4.5e-07 Score=81.39 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=122.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH----HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 044044 328 VIMDELCKNGKMDKASRLLELMIWRGV-NPNT----YTYNTLIDGYCLTDKIDHARKLFVSMESNGCM-HD----VVSYN 397 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 397 (508)
..+..+...|++++|..+++...+... .++. ..+..+...+...|++++|...++++.+.... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887432 2221 13334667777888999999999998874222 22 34688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSK-----GIKP-TVVTYNTLFLGLFEIHQVERALKLFDEMRRN----HVAAD-TYTY 466 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~ 466 (508)
.++.+|...|++++|+..|+++++. +..+ ...++..+..+|...|++++|++.+++..+. +..+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999998842 1112 2337888999999999999999999887742 22222 5688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 044044 467 NNFIDGLCKSGF-VLEALELFRAIRD 491 (508)
Q Consensus 467 ~~li~~~~~~g~-~~~A~~~~~~m~~ 491 (508)
..+..+|.+.|+ +++|.+.|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 889999999994 6999999988863
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=4.3e-08 Score=85.27 Aligned_cols=186 Identities=8% Similarity=-0.074 Sum_probs=108.3
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCC---------------
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNIL-------FGCLAKNKHYDTVLSLFKRLNSAGLFPD--------------- 141 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 141 (508)
.++++.|++.|.++.+.+|. ....|..+ ..++...++..+++..+..-.+ +.|+
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred CCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 58999999999999999998 88899988 5667777777777766666554 2222
Q ss_pred -------HHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--H
Q 044044 142 -------IYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPD--V 212 (508)
Q Consensus 142 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 212 (508)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1222334455556666666666666555432 222244444445556666666666665443321 110 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccC--CHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP--NTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
..+..+..++...|++++|+..|++..... ..| ..........++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSP------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTST------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCC------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 245555566666666666666666655322 112 2234444555555666666666666666553
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=6.3e-07 Score=80.44 Aligned_cols=163 Identities=9% Similarity=-0.014 Sum_probs=96.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCH----hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-CC----
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT----VTYNTIIDGLCKEGFVDKAKELFLKMKDENIN-PD---- 287 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~---- 287 (508)
..+..+...|++++|..++++...... ..++. ..+..+...+...|++++|...|+++.+.... .+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 346677888999999999999887542 12231 13334666777778888888888888764222 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC
Q 044044 288 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ-----GVQPD-VVTFSVIMDELCKNGKMDKASRLLELMIWR----GVNPN 357 (508)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 357 (508)
..+++.+...|...|++++|+..|+++.+. +..+. ..++..+...|.+.|++++|...+++.++. +..+.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 225777777777888888888887777631 11111 124555566666666666666666555432 11111
Q ss_pred -HHhHHHHHHHHHcCC-CHHHHHHHHHHH
Q 044044 358 -TYTYNTLIDGYCLTD-KIDHARKLFVSM 384 (508)
Q Consensus 358 -~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 384 (508)
..+|..+..+|.+.| ++++|.+.+++.
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 344555555555555 245555555444
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.88 E-value=1.6e-06 Score=78.18 Aligned_cols=173 Identities=9% Similarity=-0.031 Sum_probs=106.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-C
Q 044044 225 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG-FVDKAKELFLKMKDENINPDVVTYTSVIRGFCYA-N 302 (508)
Q Consensus 225 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 302 (508)
.+..++|+++++++...+ +.+..+|+.-..++...| .+++++++++.+..... -+..+|+.-...+.+. +
T Consensus 67 ~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcC
Confidence 344466777777777754 345566776666666666 47777777777776532 2555666555555444 5
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCC
Q 044044 303 -DWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMD--------KASRLLELMIWRGVNPNTYTYNTLIDGYCLTDK 373 (508)
Q Consensus 303 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (508)
++++++++++++.+.. +-|...|+.-.-++.+.|.++ ++++.++++++.... |...|+.....+.+.++
T Consensus 139 ~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 6677777777776653 335556655554555444444 677777777766433 66666666666666654
Q ss_pred -------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044044 374 -------IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD 408 (508)
Q Consensus 374 -------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (508)
++++.+.+++++... +-|...|+.+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566666666666554 5566666666555555544
No 122
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.87 E-value=2.4e-08 Score=82.20 Aligned_cols=127 Identities=10% Similarity=0.099 Sum_probs=104.9
Q ss_pred cCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhc
Q 044044 77 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINC-FCKM 155 (508)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 155 (508)
.+..+...|++++|+..|+.+++..|. +...|..+..++...|++++|+..|+++.+.. +.+...+..+..+ +...
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQA 92 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 345567789999999999999999887 88899999999999999999999999998764 4467788888888 7789
Q ss_pred CCc--chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 044044 156 GRV--SHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA 207 (508)
Q Consensus 156 g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (508)
|++ ++|...++++++.. +.+...+..+...+...|++++|...|+++....
T Consensus 93 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 998 99999999998864 3467788888999999999999999999988764
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.87 E-value=1.6e-07 Score=79.77 Aligned_cols=126 Identities=17% Similarity=0.011 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
+..+...+...|++++|+..|++.. .++...+..+..++...|++++|...++.+++.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555666666666666665552 3455566666666666666666666666666553 2245566666666666
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 371 TDKIDHARKLFVSMESNGCMHDV----------------VSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.|++++|...|+++.+.. +.+. ..+..+..++...|++++|...|+++.+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666666543 2222 45555666666666666666666666654
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.85 E-value=1.6e-07 Score=79.84 Aligned_cols=130 Identities=11% Similarity=0.026 Sum_probs=106.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..+..+...+...|++++|...++++. .|+...+..+...|...|++++|...+++..+.. +.+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345566778888999999999988763 5578888889999999999999999999888765 56778888899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC---------------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKP---------------TVVTYNTLFLGLFEIHQVERALKLFDEMRRNH 458 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (508)
...|++++|+..|+++.+..... ....+..+..++...|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999988864321 12677888888999999999999999888753
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.85 E-value=8.3e-08 Score=73.78 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (508)
+......|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|+..+++.++.... +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 3334444444444444444444444432 334444444444444444444444444444443211 33444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 044044 441 IHQVERALKLFDEMRR 456 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~ 456 (508)
.|++++|++.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=1.7e-07 Score=75.89 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=86.1
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|+..+++..+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345556666677777777777777766653 44566777777777777777777777777776532 2566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 044044 439 FEIHQVERALKLFDEMRRNHVAADTYTYN--NFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
...|++++|.+.++++.+... .+...+. ..+..+.+.|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777788888877777776532 2444443 33333667778888887777654
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.83 E-value=1.3e-06 Score=78.46 Aligned_cols=166 Identities=11% Similarity=0.008 Sum_probs=108.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC---CCC--HH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNT-----YTYNTLIDGYCLTDKIDHARKLFVSMESNGC---MHD--VV 394 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 394 (508)
.+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677778888888887777665322111 1233455566777888888888887765321 111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCC-CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLS---KGI-KP--TVVTYNTLFLGLFEIHQVERALKLFDEMRRN----HVAA-DT 463 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 463 (508)
+|+.++..|...|++++|+..++++.+ ... .+ ...++..++.+|...|++++|++.+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677888888888888888888887763 211 11 1247777888888888888888888877643 1111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 044044 464 YTYNNFIDGLCKSGFVLEA-LELFRAIR 490 (508)
Q Consensus 464 ~~~~~li~~~~~~g~~~~A-~~~~~~m~ 490 (508)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5677788888888888888 66677654
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.79 E-value=7.4e-08 Score=81.14 Aligned_cols=84 Identities=13% Similarity=0.083 Sum_probs=35.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHcCCCH
Q 044044 300 YANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWR----GVNP-NTYTYNTLIDGYCLTDKI 374 (508)
Q Consensus 300 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 374 (508)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1122334444555555555555555555554431 0011 122344444444445555
Q ss_pred HHHHHHHHHH
Q 044044 375 DHARKLFVSM 384 (508)
Q Consensus 375 ~~A~~~~~~~ 384 (508)
++|.+.+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=3.1e-07 Score=70.53 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
.+......+.+.|++++|...|+++++.. +.+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45556666777777777777777776653 2256667777777777777777777777776654 456667777777777
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 044044 405 KNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~ 422 (508)
..|++++|++.|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777777765
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=5.4e-07 Score=80.90 Aligned_cols=175 Identities=10% Similarity=-0.008 Sum_probs=127.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H----HhHHHHHHHHHhcCCcchHHHHHHHHHhCCC---CCC-
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD-I----YTHSILINCFCKMGRVSHGFVVLGRILRSCF---TPN- 176 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~- 176 (508)
....+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|+..+++.+.... .+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 344566677888999999999999998877532211 1 2234455667788999999999999876421 112
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC-CCCC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc
Q 044044 177 -AVTFTSLIKGLCAESRIMEAAALFTKHRVFA-CEPD-----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 249 (508)
Q Consensus 177 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 249 (508)
..+++.+...|...|++++|+..|++..... ..++ ..++..+...|...|++++|+..+++........+ ..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~-~~ 232 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SM 232 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-cH
Confidence 4578899999999999999999999877320 0112 25888999999999999999999998875321000 01
Q ss_pred cCCHhHHHHHHHHHHccCCHHHH-HHHHHHHhh
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKA-KELFLKMKD 281 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 281 (508)
..-..+|..+..+|.+.|++++| ...+++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11256788899999999999999 777777653
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=3e-08 Score=78.75 Aligned_cols=108 Identities=6% Similarity=-0.095 Sum_probs=81.4
Q ss_pred HHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Q 044044 95 DYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFT 174 (508)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 174 (508)
+++++..|. +...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|+++++.. +
T Consensus 26 ~~al~l~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P 101 (151)
T 3gyz_A 26 KDINAIPDD--MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-K 101 (151)
T ss_dssp GGGCCSCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred HHHhCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-C
Confidence 344444444 66677778888888888888888888887764 4467778888888888888888888888887764 3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 175 PNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
.+...|..+..+|...|++++|+..|++....
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35677777888888888888888888887776
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=4.6e-07 Score=73.32 Aligned_cols=128 Identities=13% Similarity=0.005 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYC 404 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (508)
.+..+...+...|++++|...++..++.. +.+...+..+...+...|++++|...+++..+.. +.+...|..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 45555666667777777777777766653 2246667777777777777777777777776654 445667777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 044044 405 KNKDVEEALSLYSEMLSKGIKPTVVTYN--TLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
..|++++|...++++.+.... +...+. .++..+...|++++|++.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777888888777777765322 333442 33333666777777777776554
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.75 E-value=5.8e-07 Score=78.21 Aligned_cols=187 Identities=6% Similarity=-0.100 Sum_probs=116.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHH-------HHHHHhcCCcchHHHHHHHHHhCCCCCC---------------
Q 044044 119 KNKHYDTVLSLFKRLNSAGLFPDIYTHSIL-------INCFCKMGRVSHGFVVLGRILRSCFTPN--------------- 176 (508)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------- 176 (508)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+...+.. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5788999999999988764 4456777777 45666666666666666555441 111
Q ss_pred -------HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc
Q 044044 177 -------AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 249 (508)
Q Consensus 177 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 249 (508)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~------- 165 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP------- 165 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-------
Confidence 1233445566677777777777777766543 332255556667777777777777776443321
Q ss_pred cCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 250 KPN--TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD--VVTYTSVIRGFCYANDWNEAKRLFIEMMDQ 317 (508)
Q Consensus 250 ~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 317 (508)
.|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111 23566667777777777777777777764322132 234455555666777777777777777765
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.74 E-value=7.5e-08 Score=81.12 Aligned_cols=158 Identities=11% Similarity=-0.028 Sum_probs=117.4
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHhcC
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA----GLF-PDIYTHSILINCFCKMG 156 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g 156 (508)
+..|++++|.+.++.+.. .|. ....++..+...+...|++++|+..+++..+. +.. .....+..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-ChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 457899999996665544 332 36678899999999999999999999998652 112 23456788889999999
Q ss_pred CcchHHHHHHHHHhC----CCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCC----HhhHHHHHHHHHhc
Q 044044 157 RVSHGFVVLGRILRS----CFT--PNAVTFTSLIKGLCAESRIMEAAALFTKHRVFAC-EPD----VFTYNTLINGLCRT 225 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~ 225 (508)
++++|...+++..+. +.. .....+..+...+...|++++|...+++...... ..+ ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999987653 211 1245678888999999999999999998764311 112 23467888999999
Q ss_pred CChHHHHHHHHHHHhC
Q 044044 226 GHTIVALNLFEEMANG 241 (508)
Q Consensus 226 g~~~~A~~~~~~~~~~ 241 (508)
|++++|...+++....
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887653
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=1.2e-08 Score=93.58 Aligned_cols=152 Identities=15% Similarity=0.048 Sum_probs=125.4
Q ss_pred CCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------HHhHHHH
Q 044044 84 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD---------------IYTHSIL 148 (508)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l 148 (508)
.+++++|+..|+...+..|. +...|..+...+.+.|++++|+..|++..+.. +.+ ...|..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHH
Confidence 34566677777666665554 67789999999999999999999999998764 222 5789999
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCCh
Q 044044 149 INCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228 (508)
Q Consensus 149 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 228 (508)
..++.+.|++++|+..++++++.. +.+...+..+..+|...|++++|+..|++..... +.+..++..+..++...|++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998874 4578889999999999999999999999998875 44678899999999999999
Q ss_pred HHH-HHHHHHHHh
Q 044044 229 IVA-LNLFEEMAN 240 (508)
Q Consensus 229 ~~A-~~~~~~~~~ 240 (508)
++| ...|+.|..
T Consensus 281 ~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 281 LAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 988 446666643
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=6e-08 Score=86.44 Aligned_cols=194 Identities=11% Similarity=-0.024 Sum_probs=103.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhh
Q 044044 211 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVT 290 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (508)
+...+..+...+...|++++|+..|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 34455566666666667777777666666643 3355666666666667777777777776666542 224556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 044044 291 YTSVIRGFCYANDWNEAKRLFIEMMDQGVQPD-VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC 369 (508)
Q Consensus 291 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (508)
+..+..++...|++++|...|++..+.. |+ ...+...+....+ ..++.. +..........+......+...
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l-- 146 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL-- 146 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--
Confidence 6666666777777777777776665531 11 0011111111111 111111 1112222233344443333322
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 044044 370 LTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKN-KDVEEALSLYSEMLS 421 (508)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 421 (508)
..|+.++|.+.++...+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 147 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2577778887777776653 23333334444444444 567778888877665
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=6.1e-07 Score=68.41 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=52.1
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 359 YTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
..+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344455555555555555555555555442 3344555555555555555666655555555542 12444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 044044 439 FEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~ 457 (508)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5556666666665555543
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=1.3e-07 Score=75.07 Aligned_cols=98 Identities=16% Similarity=-0.021 Sum_probs=61.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHH
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY 256 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (508)
...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++....+ +.+...|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------P~~~~~~ 107 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------KNDYTPV 107 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SSCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------CCCcHHH
Confidence 3445555666666666666666666666553 3356666666666666666666666666666653 3345566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
..+..+|...|++++|...|++..+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666666654
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.71 E-value=5.9e-06 Score=74.08 Aligned_cols=183 Identities=9% Similarity=-0.037 Sum_probs=143.7
Q ss_pred HHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 044044 88 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH----------YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGR 157 (508)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 157 (508)
++|+.+++.++..+|. +..+|+.-..++...+. +++++.+++.+.... +-+..+|+.-.-++...|+
T Consensus 47 ~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 5899999999999998 88899987777766554 688999999998864 5578888888888888884
Q ss_pred --cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc---------
Q 044044 158 --VSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESR-IMEAAALFTKHRVFACEPDVFTYNTLINGLCRT--------- 225 (508)
Q Consensus 158 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 225 (508)
+++++.+++++++.. +-|..+|+.-.-.+...|. ++++++.++++.... +.|..+|+.....+.+.
T Consensus 124 ~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 124 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-----
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccc
Confidence 789999999999875 4578888888777788888 699999999999876 55888888777766654
Q ss_pred -----CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHcc-----------CCHHHHHHHHHHHhhC
Q 044044 226 -----GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKE-----------GFVDKAKELFLKMKDE 282 (508)
Q Consensus 226 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~ 282 (508)
+.++++++.++.....+ |-|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~-------P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 45789999999998875 56788887665555554 3356666666666653
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=4.8e-07 Score=69.68 Aligned_cols=119 Identities=10% Similarity=0.013 Sum_probs=73.0
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+..+++..+... .+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3445555566666666666666666665543 34556666666666667777777777766666432 245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 438 LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFV 479 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 479 (508)
+...|++++|.+.+++..+.. +.+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777777777777777666542 22455556666666655543
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=4e-07 Score=70.51 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=41.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|+..++++.+... .+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 33444444444444444444444444332 22344444444444444444444444444444321 13334444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 044044 440 EIHQVERALKLFDEMRR 456 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~ 456 (508)
..|++++|++.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=7.3e-08 Score=85.87 Aligned_cols=195 Identities=9% Similarity=-0.034 Sum_probs=117.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhH
Q 044044 176 NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVT 255 (508)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (508)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|+..+++....+ +.+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHH
Confidence 45566677777778888888888888877663 3367777888888888888888888888887764 445677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 044044 256 YNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCK 335 (508)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (508)
+..+..++...|++++|...|++..+.... +...+...+....+. .++.. +........+.+......+... .
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~ 147 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--I 147 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--H
Confidence 788888888888888888888877653110 000111111111111 11111 1112222233344433333222 2
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Q 044044 336 NGKMDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLT-DKIDHARKLFVSMESN 387 (508)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 387 (508)
.|++++|.+.++.+.+. .|+ ......+...+.+. +.+++|.++|.++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 57888888888777754 344 33334444444444 6678888888877653
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.70 E-value=5.3e-08 Score=77.34 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=78.6
Q ss_pred HHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 044044 93 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSC 172 (508)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 172 (508)
.|+.++...|. +...+..+...+...|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|++++...
T Consensus 9 ~~~~al~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEISSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCCHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555555554 66677777777888888888888888877653 4466777777777778888888888887777653
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 173 FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
+.+...+..+..+|...|++++|+..|++....
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 335566777777777778888887777777655
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=1.2e-07 Score=75.27 Aligned_cols=98 Identities=11% Similarity=-0.098 Sum_probs=73.3
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
...+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|+..|++++...+. +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 4556667777778888888888888777664 557777777888888888888888888887776432 55667777788
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 044044 438 LFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~ 457 (508)
+...|++++|++.|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877764
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.68 E-value=3.7e-07 Score=74.98 Aligned_cols=119 Identities=9% Similarity=0.052 Sum_probs=62.4
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHH-HHhcCCh--HHH
Q 044044 155 MGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLING-LCRTGHT--IVA 231 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 231 (508)
.|++++|...+++..+.. +.+...+..+...|...|++++|+..|++..... +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 345555555555554432 2344555555555555566666666555555443 2244455555555 4555665 666
Q ss_pred HHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 232 LNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
+..|+++...+ +.+...+..+..++...|++++|...|+++.+.
T Consensus 101 ~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666655543 233455555566666666666666666665554
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.67 E-value=7.2e-07 Score=68.99 Aligned_cols=118 Identities=13% Similarity=0.012 Sum_probs=82.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044044 322 DVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLIN 401 (508)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (508)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44566667777777788888888887777653 2256677777777888888888888887777654 446777777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 044044 402 WYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH 442 (508)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (508)
++...|++++|+..|++..+.... +...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 888888888888888887765322 3445555555555544
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=5.1e-07 Score=82.68 Aligned_cols=123 Identities=10% Similarity=-0.115 Sum_probs=63.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPN--------------TYTYNTLIDGYCLTDKIDHARKLFVSMESNG 388 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (508)
...+..+...+.+.|++++|...|+++++...... ...|..+..+|.+.|++++|...++++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566666667777777777777777666532211 2444444555555555555555555544443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 044044 389 CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 447 (508)
+.+...|..+..+|...|++++|+..|+++++.... +...+..+..++...|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555443211 333444444444444444444
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=1.4e-06 Score=66.43 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=62.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044044 324 VTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWY 403 (508)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (508)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344555555556666666666666555542 2244555556666666666666666666665543 34555666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044044 404 CKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGL 438 (508)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (508)
...|++++|...++++.+... .+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 666666666666666665422 1333444444333
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=8.5e-07 Score=68.25 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=21.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 183 LIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
+...+...|++++|+..|++..... +.+...+..+...+...|++++|+..+++...
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 3333333444444444444333321 11233333344444444444444444444333
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=1.7e-07 Score=73.87 Aligned_cols=110 Identities=10% Similarity=-0.027 Sum_probs=82.2
Q ss_pred HHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 044044 93 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSC 172 (508)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 172 (508)
.|+++++..|. +...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|+..+++++...
T Consensus 6 ~l~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLRGLSED--TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHcCCHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555555544 56667777788888888888888888887764 4567778888888888888888888888887764
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 173 FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
+.+...+..+..++...|++++|+..|++....
T Consensus 83 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 -INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667777888888888888888888887765
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.60 E-value=9.5e-07 Score=67.90 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|++.+++.++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444555555555554444432 33444444445555555555555555544443
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=1e-06 Score=67.65 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHH
Q 044044 393 VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNH--VAAD----TYTY 466 (508)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~ 466 (508)
...+..++..+.+.|++++|+..|+++++..+. +...|..+..+|...|++++|++.+++..+.+ ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 346778999999999999999999999987433 67889999999999999999999999988642 1122 2467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCL 504 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 504 (508)
..+..++...|++++|++.|++.+.. .||..+...|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 77888999999999999999999864 4666655544
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.59 E-value=7.8e-05 Score=66.85 Aligned_cols=96 Identities=7% Similarity=-0.043 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCC-H
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTG--HTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGF-V 269 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 269 (508)
+++++.+++.+.... +.+..+|+.-.-++...| .+++++.+++.+.+.+ +.|-.+|+.-.-+....|. +
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-------prNy~AW~~R~~vl~~l~~~~ 161 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAP 161 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCcCH
Confidence 345555555555443 234455555544444444 2555666666555553 3455555555555555555 3
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 044044 270 DKAKELFLKMKDENINPDVVTYTSVIRG 297 (508)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (508)
+++++.++++.+..+ -|...|+.....
T Consensus 162 ~eel~~~~~~I~~~p-~N~SAW~~R~~l 188 (331)
T 3dss_A 162 AEELAFTDSLITRNF-SNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 555555555555432 244444444333
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.58 E-value=9.9e-08 Score=80.15 Aligned_cols=88 Identities=15% Similarity=-0.101 Sum_probs=50.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHH
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN 257 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
.++..+..++...|++++|+..+++..... +.+..++..+..++...|++++|++.|++..... +.+...+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~ 160 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHH
Confidence 455556666666666666666666665553 3345566666666666666666666666666543 23445555
Q ss_pred HHHHHHHccCCHHHHH
Q 044044 258 TIIDGLCKEGFVDKAK 273 (508)
Q Consensus 258 ~l~~~~~~~g~~~~a~ 273 (508)
.+..++...++.+++.
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555444444
No 155
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.4e-06 Score=83.05 Aligned_cols=197 Identities=10% Similarity=-0.052 Sum_probs=141.1
Q ss_pred CCCChHHHHHHHHHhHHcCCCCCCc---------------ccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHH---
Q 044044 83 NLITPNEALCIFDYMLRMHPSPPPV---------------SSFNILFGCLAKNKHYDTVLSLFKRLNSAG-LFPDIY--- 143 (508)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--- 143 (508)
..|++++|++.|..+++..+...+. .++..++..|...|++++|.+.+..+.+.- ..++..
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK 95 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence 4579999999999999988763332 137789999999999999999999876431 112221
Q ss_pred -hHHHHHHHHHhcCCcchHHHHHHHHHh----CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC----C-CH
Q 044044 144 -THSILINCFCKMGRVSHGFVVLGRILR----SCFTP-NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE----P-DV 212 (508)
Q Consensus 144 -~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~ 212 (508)
..+.+...+...|+++.|..+++.... .+..+ -..++..+...|...|++++|..+++++...-.. + ..
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 223333444567889999999888764 22222 3457788999999999999999999987643111 1 24
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 213 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
.++..++..|...|++++|..++++......... .++. ...+..++..+...|++++|...|.+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAANSIY--CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5788999999999999999999998765321110 1111 34566777788889999999988877654
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.4e-06 Score=66.81 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (508)
+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..+++.++.... +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 3334444444444445544444444432 334444444444444555555555555444443211 33444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 044044 441 IHQVERALKLFDEMRR 456 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~ 456 (508)
.|++++|++.|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 4555555544444443
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.2e-06 Score=67.21 Aligned_cols=98 Identities=15% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044044 393 VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDG 472 (508)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 472 (508)
...|..+...+...|++++|+..|++.++... .+...|..+..++...|++++|+..+++..+.+ +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 45677888999999999999999999998743 367889999999999999999999999999874 3368889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 044044 473 LCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 473 ~~~~g~~~~A~~~~~~m~~~ 492 (508)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=4e-06 Score=62.98 Aligned_cols=94 Identities=16% Similarity=0.082 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE 440 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (508)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 3444444444555555555554444432 22444444444445555555555555554444321 133444444444555
Q ss_pred cCCHHHHHHHHHHHHH
Q 044044 441 IHQVERALKLFDEMRR 456 (508)
Q Consensus 441 ~g~~~~a~~~~~~~~~ 456 (508)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555554444
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.51 E-value=1.1e-06 Score=84.60 Aligned_cols=124 Identities=9% Similarity=0.001 Sum_probs=102.9
Q ss_pred hhccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 044044 74 CKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC 153 (508)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (508)
....|..+...|++++|+..|+++++..|. +..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..++.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345677888999999999999999999887 88999999999999999999999999999874 557888999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 044044 154 KMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKG--LCAESRIMEAAALFT 201 (508)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 201 (508)
..|++++|.+.++++++.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998864 2344556556555 888899999999998
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=2.2e-06 Score=71.77 Aligned_cols=95 Identities=17% Similarity=0.039 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044044 394 VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGL 473 (508)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 473 (508)
..|..+..+|...|++++|+..++++++... .+...+..+..++...|++++|++.|++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 5566667777777777777777777776532 255666777777777777777777777776652 23555666666666
Q ss_pred HhcCCHHHHH-HHHHHHH
Q 044044 474 CKSGFVLEAL-ELFRAIR 490 (508)
Q Consensus 474 ~~~g~~~~A~-~~~~~m~ 490 (508)
...|+.+++. ..|..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 6666666555 4444444
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.51 E-value=1.9e-06 Score=64.11 Aligned_cols=98 Identities=14% Similarity=-0.014 Sum_probs=54.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccC--CHh
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP--NTV 254 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~ 254 (508)
...+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|+..|++..... +. +..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 77 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-------EDEYNKD 77 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------CCTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cccchHH
Confidence 3444555555555666666666666555543 2344555555666666666666666666655543 22 345
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHhhC
Q 044044 255 TYNTIIDGLCKE-GFVDKAKELFLKMKDE 282 (508)
Q Consensus 255 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 282 (508)
.+..+..++... |++++|.+.+++....
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 555566666666 6666666666665544
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=3.3e-06 Score=68.24 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=45.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.++.... +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34444444444555555555554444432 234444445555555555555555555555443211 3444445555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 044044 440 EIHQVERALKLFDEMRR 456 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~ 456 (508)
..|++++|++.|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555444
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.50 E-value=6.7e-06 Score=63.91 Aligned_cols=98 Identities=14% Similarity=0.042 Sum_probs=57.3
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFL 436 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 436 (508)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|+..+++.++.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34555555566666666666666666655543 334555666666666666666666666666654322 4555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 044044 437 GLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~ 456 (508)
++...|++++|+..|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665554
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.49 E-value=2.3e-06 Score=67.25 Aligned_cols=95 Identities=18% Similarity=-0.008 Sum_probs=54.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
.+..+...+.+.|++++|...|+++...+ +.+...|..+..++...|++++|+..|++++...+. +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 34444455556666666666666655543 345555666666666666666666666666654322 4445555666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 044044 440 EIHQVERALKLFDEMRR 456 (508)
Q Consensus 440 ~~g~~~~a~~~~~~~~~ 456 (508)
..|++++|++.|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665554
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=6.7e-06 Score=61.74 Aligned_cols=94 Identities=10% Similarity=-0.017 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHH
Q 044044 180 FTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTI 259 (508)
Q Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (508)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..... +.+...+..+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~ 78 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------cccHHHHHHH
Confidence 3344444444455555555554444432 2234444444444445555555555555444432 2233444444
Q ss_pred HHHHHccCCHHHHHHHHHHHhh
Q 044044 260 IDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
..++...|++++|.+.+++..+
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 4444455555555555544443
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.1e-05 Score=76.85 Aligned_cols=197 Identities=10% Similarity=-0.048 Sum_probs=108.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 044044 260 IDGLCKEGFVDKAKELFLKMKDENINPDV----------------VTYTSVIRGFCYANDWNEAKRLFIEMMDQG-VQPD 322 (508)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 322 (508)
...+.+.|++++|.+.|.++.+....... ..+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567778888888888888775322110 125566777777777777777777665421 1111
Q ss_pred HH----hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhC--C---
Q 044044 323 VV----TFSVIMDELCKNGKMDKASRLLELMIWR----GVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESN--G--- 388 (508)
Q Consensus 323 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--- 388 (508)
.. +.+.+...+...|+++.+..++...... +..+. ..++..+...|...|++++|..+++++... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 2222222333456667777666655431 22222 345566666666677777777666665432 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CC-C--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 389 CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK--GI-KP-T--VVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.+.....+..++..|...|++++|..++++.... .. .| . ...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0112345666666666677777777666665532 11 11 1 23344555556666666666666665554
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.45 E-value=5.8e-06 Score=64.27 Aligned_cols=101 Identities=13% Similarity=0.019 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNF 469 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 469 (508)
+.+...|..+...+...|++++|+..|++.++.... +...+..+..++...|++++|+..+++..+.+ +.+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 457888999999999999999999999999987433 67889999999999999999999999999864 3468889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 044044 470 IDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 470 i~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
..+|...|++++|+..|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999853
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=2.7e-06 Score=63.32 Aligned_cols=99 Identities=8% Similarity=0.032 Sum_probs=70.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC--CHHhHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTP--NAVTFTSL 183 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 183 (508)
+...|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 56677777778888888888888888877653 3456667777777777777777777777776653 22 45666677
Q ss_pred HHHHHhc-CCHHHHHHHHHHhhhc
Q 044044 184 IKGLCAE-SRIMEAAALFTKHRVF 206 (508)
Q Consensus 184 ~~~~~~~-g~~~~A~~~~~~~~~~ 206 (508)
...+... |++++|++.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7777777777776655
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=2.1e-06 Score=65.99 Aligned_cols=97 Identities=11% Similarity=0.149 Sum_probs=55.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HhHHHH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGI--KPT----VVTYNT 433 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 433 (508)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555566666666666666655543 33555556666666666666666666666555321 111 445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 434 LFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..++...|++++|.+.|+++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 666666666666666666666553
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=4.5e-06 Score=67.39 Aligned_cols=96 Identities=14% Similarity=0.011 Sum_probs=49.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHH
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYN 257 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (508)
..+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++....+ +.+...|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~ 83 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-------PKYSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHH
Confidence 344444455555555555555555554443 2244455555555555555555555555555543 22344555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhh
Q 044044 258 TIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
.+..++...|++++|.+.|++..+
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.3e-05 Score=63.19 Aligned_cols=97 Identities=10% Similarity=-0.052 Sum_probs=51.1
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHD----VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNT 433 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (508)
...+..+...+...|++++|...|++..+.. |+ ...|..+..+|...|++++|+..+++..+... .+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHH
Confidence 4444555555555555555555555555442 33 34455555555555555555555555555421 13445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 434 LFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..++...|++++|.+.|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555543
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=3.9e-06 Score=63.73 Aligned_cols=91 Identities=15% Similarity=-0.012 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044044 398 TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSG 477 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 477 (508)
.+...+.+.|++++|+..|+++++..+. +...|..+..++...|++++|+..|++..+... .+...+..+..++.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 3444455555555555555555554222 444555555555555555555555555555421 24445555555555556
Q ss_pred CHHHHHHHHHHHH
Q 044044 478 FVLEALELFRAIR 490 (508)
Q Consensus 478 ~~~~A~~~~~~m~ 490 (508)
++++|+..|++.+
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666555555
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.37 E-value=3.7e-06 Score=63.89 Aligned_cols=93 Identities=11% Similarity=-0.048 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 441 (508)
..+...+.+.|++++|...++++.+.. +.+...|..+..++...|++++|+..|++.++..+. +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334455556666666666666665543 345556666666666666666666666666654322 445555666666666
Q ss_pred CCHHHHHHHHHHHHH
Q 044044 442 HQVERALKLFDEMRR 456 (508)
Q Consensus 442 g~~~~a~~~~~~~~~ 456 (508)
|++++|+..+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666554
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.5e-05 Score=62.68 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=65.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPD----IYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFT 181 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (508)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 5667777788888888888888888888765 344 4556666666666777777777666665542 22455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc
Q 044044 182 SLIKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
.+..++...|++++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666665554
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.35 E-value=4.3e-06 Score=64.22 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=86.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC----
Q 044044 177 AVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN---- 252 (508)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---- 252 (508)
...+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|+..+++.....+. ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE----NREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----STTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc----cchhHHHH
Confidence 3566777888888899999999999888764 446778888999999999999999999998875310 0111
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIR 296 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 296 (508)
...+..+..++...|++++|.+.|+++.+. .|+......+..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 667888888999999999999999988875 345544444433
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=2.6e-06 Score=68.32 Aligned_cols=132 Identities=13% Similarity=0.035 Sum_probs=78.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHh
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGC-MHD----VVSYNTLINWYCKNKDVEEALSLYSEMLSKG----IKP-TVV 429 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~ 429 (508)
++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444555555566666666666655543210 011 1345566666777777777777776665431 000 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRN----HVA-ADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777777888777777766532 111 1134566677778888888888888887764
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=4.5e-06 Score=66.91 Aligned_cols=138 Identities=12% Similarity=0.031 Sum_probs=82.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHRVFACE-PD----VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN 252 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 252 (508)
.++..+...+...|++++|+..+++....... .+ ..++..+...+...|++++|.+.+++........+. ....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-RAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-cHHH
Confidence 34556666677777777777777765543111 11 236677778888888888888888876653210000 1111
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDE----NIN-PDVVTYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
...+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445667777777888888888877776532 100 0123445555566666666666666665543
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.29 E-value=1.4e-05 Score=78.30 Aligned_cols=174 Identities=10% Similarity=-0.047 Sum_probs=146.7
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKH----------YDTVLSLFKRLNSAGLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (508)
--++|++.++.++..+|. +..+|+.-..++...|+ ++++++.++.+.+.. +-+..+|..-.-++.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 347899999999999998 89999998888888887 999999999999875 55788899888888899
Q ss_pred C--CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhc-------
Q 044044 156 G--RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES-RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRT------- 225 (508)
Q Consensus 156 g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 225 (508)
+ +++++++.++++++.. +-+..+|+.-...+.+.| .++++++.++++.+.. +.|..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 6699999999999875 447888888888888888 8999999999998875 45788888887777663
Q ss_pred -------CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHH
Q 044044 226 -------GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDK 271 (508)
Q Consensus 226 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (508)
+.++++++.+++....+ +-|...|+.+...+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-------CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999998865 5678899988888888777554
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=2.9e-06 Score=81.58 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=40.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044044 333 LCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEA 412 (508)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 412 (508)
+.+.|++++|.+.++++++.. +.+...+..+..+|.+.|++++|.+.++++.+.. +.+...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344445555555555444432 1134444444444445555555555554444442 23344444444444444555555
Q ss_pred HHHHHHHHH
Q 044044 413 LSLYSEMLS 421 (508)
Q Consensus 413 ~~~~~~~~~ 421 (508)
++.|+++.+
T Consensus 94 ~~~~~~al~ 102 (477)
T 1wao_1 94 LRDYETVVK 102 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544444
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.26 E-value=3.8e-05 Score=58.80 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=44.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHH
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNGCMHDV---VSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPT---VVTYNTLFLGL 438 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 438 (508)
...+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|+..|+++.+.... + ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 344445555555555555554432 1122 34444555555555555555555555543211 1 33444555555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 044044 439 FEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~ 457 (508)
...|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555543
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.24 E-value=2.8e-06 Score=64.14 Aligned_cols=86 Identities=10% Similarity=-0.024 Sum_probs=49.5
Q ss_pred cCCcchHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 044044 155 MGRVSHGFVVLGRILRSC--FTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVAL 232 (508)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 232 (508)
.|++++|+..|+++++.+ .+.+...+..+...|...|++++|+..|++..... +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355566666666665543 12234455666666666666666666666666553 334556666666666667777777
Q ss_pred HHHHHHHhC
Q 044044 233 NLFEEMANG 241 (508)
Q Consensus 233 ~~~~~~~~~ 241 (508)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666654
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.24 E-value=1.3e-05 Score=74.09 Aligned_cols=140 Identities=9% Similarity=-0.028 Sum_probs=85.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
...+..+...+.+.|++++|...|+++++.- +... .....+++ .+.. +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~~~-------~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDADG-------AKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHHHH-------GGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChHHH-------HHHH-HHHHHHHHHHHHH
Confidence 4456667777778888888888887776520 0000 00001111 0010 2244566777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEA 482 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 482 (508)
|.+.|++++|+..++++++... .+...+..+..+|...|++++|++.|+++.+.. +.+...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777532 256677777777777777777777777777653 22556666666666666666655
Q ss_pred HH
Q 044044 483 LE 484 (508)
Q Consensus 483 ~~ 484 (508)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.22 E-value=2.2e-05 Score=75.03 Aligned_cols=90 Identities=7% Similarity=-0.089 Sum_probs=60.9
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.... +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4566667777777777777777777777664 456677777777777777777777777777765322 44566667777
Q ss_pred HHhcCCHHHHHH
Q 044044 438 LFEIHQVERALK 449 (508)
Q Consensus 438 ~~~~g~~~~a~~ 449 (508)
+...++.+++.+
T Consensus 395 ~~~~~~~~~a~~ 406 (457)
T 1kt0_A 395 QKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666653
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.20 E-value=2e-05 Score=75.45 Aligned_cols=151 Identities=11% Similarity=-0.002 Sum_probs=106.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC--------------HHhHHHHHHHH
Q 044044 122 HYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPN--------------AVTFTSLIKGL 187 (508)
Q Consensus 122 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 187 (508)
++++|+..|+...+.. +.....+..+...+.+.|++++|+..|+++++...... ..+|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444333221 12344566677777777788888877777766422211 57888889999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccC
Q 044044 188 CAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEG 267 (508)
Q Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (508)
.+.|++++|+..+++..... +.+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.+
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHH
Confidence 99999999999999988875 4478889999999999999999999999999875 445678888888888888
Q ss_pred CHHHHHH-HHHHHhh
Q 044044 268 FVDKAKE-LFLKMKD 281 (508)
Q Consensus 268 ~~~~a~~-~~~~~~~ 281 (508)
+++++.+ .+..|..
T Consensus 400 ~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 400 EHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHh
Confidence 8877764 4455543
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.19 E-value=5.7e-05 Score=57.77 Aligned_cols=95 Identities=13% Similarity=-0.019 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC---HHhHHHH
Q 044044 110 FNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDI---YTHSILINCFCKMGRVSHGFVVLGRILRSCFTPN---AVTFTSL 183 (508)
Q Consensus 110 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 183 (508)
+..+...+...|++++|+..|+.+.+.. +.+. ..+..+..++.+.|++++|...++++.+... .+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHH
Confidence 3444555566666666666666665532 1122 3555555666666666666666666655421 12 4445556
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhc
Q 044044 184 IKGLCAESRIMEAAALFTKHRVF 206 (508)
Q Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~ 206 (508)
..++...|++++|...|+++...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666666654
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=1.4e-05 Score=64.27 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=68.3
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESN--------G---------CMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
...+......+.+.|++++|...|.+..+. . .+.+...|..+..+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666777778888888888888777654 0 02233566677777777777777777777777
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 421 SKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..+ .+...|..+..+|...|++++|+..|++..+.
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7532 25667777777777777777777777777764
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=9.2e-05 Score=72.54 Aligned_cols=173 Identities=8% Similarity=-0.031 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCC-
Q 044044 304 WNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK----------MDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTD- 372 (508)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 372 (508)
.++|++.++++.... +-+...|+.--.++...|+ ++++.+.++.+++...+ +..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 355666666666653 2344455555555555555 67777777777776433 5667777666777777
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---------
Q 044044 373 -KIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK-DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI--------- 441 (508)
Q Consensus 373 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 441 (508)
+++++.+.++++.+.+ +.+..+|+....++.+.| .++++++.++++++..+. |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6688888888877765 557777777777777777 778888888887776544 666776666665542
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044044 442 -----HQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLE 481 (508)
Q Consensus 442 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 481 (508)
+.++++++.++++.... +-|...|..+...+.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45788888888888764 3377788877777777666443
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.17 E-value=2.4e-05 Score=62.87 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=80.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHc--------CC---------CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWR--------GV---------NPNTYTYNTLIDGYCLTDKIDHARKLFVSME 385 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (508)
...+......+.+.|++++|...|...++. .. +.+...|..+..+|.+.|++++|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777788889999999999999888765 10 1124577888888999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 386 SNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
+.+ +.+...|..+..+|...|++++|+..|++.++.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 875 667888889999999999999999999998886
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.17 E-value=8.6e-05 Score=57.68 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=39.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044044 364 LIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCK----NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLF 439 (508)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (508)
+...|...+..++|.+.|++..+.| +...+..+...|.. .+++++|+++|++..+.| +...+..|...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3334444444444444444444432 34444444444444 444444444444444432 3333444444444
Q ss_pred h----cCCHHHHHHHHHHHHHC
Q 044044 440 E----IHQVERALKLFDEMRRN 457 (508)
Q Consensus 440 ~----~g~~~~a~~~~~~~~~~ 457 (508)
. .++.++|.++|++..+.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 4 44444444444444443
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.16 E-value=5.7e-05 Score=59.21 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMRRN-----HVAA-DTYTY----NNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
.|..+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|+..|++.+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555555555555555555555442 0122 23344 455555555555555555555554
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.15 E-value=7.7e-05 Score=57.95 Aligned_cols=113 Identities=9% Similarity=-0.100 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHH
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFE----IHQVERA 447 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a 447 (508)
+++++|.+.|++..+.+ .+... +...|...+.+++|+++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46889999999999987 33333 7778888888999999999999975 67888889999988 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCc
Q 044044 448 LKLFDEMRRNHVAADTYTYNNFIDGLCK----SGFVLEALELFRAIRDSKYE 495 (508)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 495 (508)
.++|++..+.| +...+..|...|.. .+++++|.++|++..+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999999875 67778888899988 89999999999999988743
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=3.5e-06 Score=63.60 Aligned_cols=85 Identities=9% Similarity=0.025 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 044044 371 TDKIDHARKLFVSMESNG--CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERAL 448 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 448 (508)
.|++++|+..|++..+.+ -+.+...|..+..+|...|++++|+..|+++++..+. +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 1223344555555555555555555555555554322 3445555555555555555555
Q ss_pred HHHHHHHH
Q 044044 449 KLFDEMRR 456 (508)
Q Consensus 449 ~~~~~~~~ 456 (508)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.14 E-value=3.1e-05 Score=71.66 Aligned_cols=140 Identities=7% Similarity=-0.063 Sum_probs=88.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 044044 288 VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDG 367 (508)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (508)
...+..+...+.+.|++++|+..|++.++.- +.. ......++ ..+. .+.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~-------~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDAD-------GAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHH-------HGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHH-------HHHH-HHHHHHHHHHHHHH
Confidence 4567788889999999999999999987630 000 00001111 1110 01134566667777
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 044044 368 YCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 447 (508)
|.+.|++++|.+.++++++.. +.+...|..+..+|...|++++|+..|+++.+.... +...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777664 446677777777777777777777777777765322 455566666666666655555
Q ss_pred HH
Q 044044 448 LK 449 (508)
Q Consensus 448 ~~ 449 (508)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.10 E-value=9.4e-06 Score=74.26 Aligned_cols=148 Identities=14% Similarity=0.061 Sum_probs=86.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINW 402 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (508)
...+..+...+.+.|++++|...|+++++. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 556777788888899999999999998865 333321 233444444443321 1367888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 044044 403 YCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDG-LCKSGFVLE 481 (508)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~ 481 (508)
|.+.|++++|+..+++.++... .+...|..+..+|...|++++|+..|+++.+... .+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988643 3677888999999999999999999998876532 244455555544 334567778
Q ss_pred HHHHHHHHHH
Q 044044 482 ALELFRAIRD 491 (508)
Q Consensus 482 A~~~~~~m~~ 491 (508)
+...|++|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8888888874
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=5.2e-05 Score=59.42 Aligned_cols=96 Identities=18% Similarity=0.012 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC------C-----HhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------
Q 044044 180 FTSLIKGLCAESRIMEAAALFTKHRVFACEP------D-----VFTYNTLINGLCRTGHTIVALNLFEEMANG------- 241 (508)
Q Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 241 (508)
+......+.+.|++++|+..|++........ + ...|..+..++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555566666666766666666553210 2 238888889999999999999999988875
Q ss_pred CCCCCccccCCHhHH----HHHHHHHHccCCHHHHHHHHHHHhhC
Q 044044 242 NGEFGVVCKPNTVTY----NTIIDGLCKEGFVDKAKELFLKMKDE 282 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (508)
+ +.+...| .....++...|++++|+..|++..+.
T Consensus 94 ~-------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 N-------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp T-------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 2346678 88999999999999999999998653
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=1.9e-05 Score=75.47 Aligned_cols=124 Identities=7% Similarity=-0.079 Sum_probs=68.5
Q ss_pred HHcCCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HhHHHH
Q 044044 368 YCLTDKIDHARKLFVSMESN-----G--CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK-----GI-KPT-VVTYNT 433 (508)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~ 433 (508)
+...|++++|+.++++..+. | .+.-..+++.|+.+|...|++++|+.++++.++. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666666555432 1 0112345666666666666766666666665532 21 122 335666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 434 LFLGLFEIHQVERALKLFDEMRR-----NHVA-AD-TYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
|...|..+|++++|+.++++..+ .|.. |+ ..+...+..++...|.+++|..+|+++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777776666553 1211 11 22344455566666777777777777664
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.02 E-value=1.6e-05 Score=72.65 Aligned_cols=147 Identities=9% Similarity=-0.011 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHH
Q 044044 144 THSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLC 223 (508)
Q Consensus 144 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (508)
.+..+...+.+.|++++|...|++.+.. .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3445555566666666666666666543 122211 111222222222111 125666777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcC
Q 044044 224 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRG-FCYAN 302 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 302 (508)
+.|++++|+..+++....+ +.+...|..+..+|...|++++|...|+++.+... .+...+..+... ....+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKA 313 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH
Confidence 7777777777777777653 34566777777777777777777777777765421 133344444433 22345
Q ss_pred CHHHHHHHHHHHHHc
Q 044044 303 DWNEAKRLFIEMMDQ 317 (508)
Q Consensus 303 ~~~~a~~~~~~~~~~ 317 (508)
..+.+...|..|...
T Consensus 314 ~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 314 LYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHhhCC
Confidence 566667777766554
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=2.4e-05 Score=74.69 Aligned_cols=131 Identities=10% Similarity=-0.078 Sum_probs=87.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-----CC--CCChhhHH
Q 044044 221 GLCRTGHTIVALNLFEEMANGNG-EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-----NI--NPDVVTYT 292 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~ 292 (508)
.+..+|++++|+.++++..+... .+|...+....+++.|+.+|...|++++|..++++.... |. +....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999999988876432 222222223568899999999999999999999887542 21 11245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 044044 293 SVIRGFCYANDWNEAKRLFIEMMDQ-----GV-QPD-VVTFSVIMDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 293 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
.|...|...|++++|+.++++.++. |. .|+ ..+...+..++...+.+++|..++..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888776542 21 111 22344455566666667777777766654
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.95 E-value=2.4e-05 Score=58.68 Aligned_cols=80 Identities=11% Similarity=-0.038 Sum_probs=66.5
Q ss_pred HHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHH
Q 044044 89 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRI 168 (508)
Q Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 168 (508)
.|+..|+++++..|. +...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++.
T Consensus 3 ~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578888888888876 77888889999999999999999999988764 446777888888888889999998888887
Q ss_pred HhC
Q 044044 169 LRS 171 (508)
Q Consensus 169 ~~~ 171 (508)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=1.4e-05 Score=59.36 Aligned_cols=93 Identities=10% Similarity=-0.022 Sum_probs=57.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC---
Q 044044 176 NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--- 252 (508)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--- 252 (508)
+...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|+..+++..... +.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-------STAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------SSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCccHH
Confidence 34456666666777777777777777766653 3356667777777777777777777777777654 122
Q ss_pred ---HhHHHHHHHHHHccCCHHHHHHHH
Q 044044 253 ---TVTYNTIIDGLCKEGFVDKAKELF 276 (508)
Q Consensus 253 ---~~~~~~l~~~~~~~g~~~~a~~~~ 276 (508)
...+..+..++...|+++.|.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 334444555555555555444433
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.87 E-value=3.6e-05 Score=60.19 Aligned_cols=84 Identities=6% Similarity=0.015 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChh----------HHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYD----------TVLSLFKRLNSAGLFPDIYTHSILINCFCK 154 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (508)
+.+++|+..++.+++..|. +...|..+..++...++++ +|+..|++.++.. +.+...|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 4688999999999999988 8899999999999887764 7888888877753 3356677777777776
Q ss_pred cC-----------CcchHHHHHHHHHhC
Q 044044 155 MG-----------RVSHGFVVLGRILRS 171 (508)
Q Consensus 155 ~g-----------~~~~a~~~~~~~~~~ 171 (508)
.| ++++|++.|+++++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 54 566666666665554
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=1.5e-05 Score=59.18 Aligned_cols=91 Identities=13% Similarity=0.079 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 044044 393 VVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAAD------TYTY 466 (508)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~ 466 (508)
...|..+...+...|++++|+..|++.++... .+...+..+..++...|++++|++.+++..+.... + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 34455555566666666666666666655422 24555556666666666666666666666553211 1 3334
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALEL 485 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~ 485 (508)
..+..++...|++++|+..
T Consensus 82 ~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHhHhhhHhH
Confidence 4444445555544444433
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.83 E-value=0.00017 Score=53.86 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 377 ARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
|...|+++.+.. +.+...+..+...|...|++++|+..|++.++... .+...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 34555566666666666666666666666665432 2345555666666666666666666665554
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.81 E-value=4e-05 Score=59.93 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD----------VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI 441 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 441 (508)
+.+++|.+.+++..+.+ +.+...|+.+..++...++ +++|+..|++.++..+. +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 34555555555555543 4455555555555555443 34666666666665322 445566666666655
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044044 442 H-----------QVERALKLFDEMRRNHVAADTYTYNNFI 470 (508)
Q Consensus 442 g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li 470 (508)
| ++++|++.|++..+. .|+...|...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3 677777777777663 45544444333
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.73 E-value=0.00037 Score=49.17 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
+..+...+...|++++|+..+++.++... .+...+..+..++...|++++|++.+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444444444444444443321 1333444444444444444444444444443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.71 E-value=0.00046 Score=48.62 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=56.9
Q ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044044 358 TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLG 437 (508)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (508)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..+... .+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4566677777778888888888888777654 44667777778888888888888888888777532 245555555555
Q ss_pred HHh
Q 044044 438 LFE 440 (508)
Q Consensus 438 ~~~ 440 (508)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.60 E-value=0.0003 Score=50.94 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 391 HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
.+...+..+..+|...|++++|+..|+++++.... +...|..+..+|...|++++|++.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666666666666666666666654322 344556666666666666666666665543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.60 E-value=0.00026 Score=51.29 Aligned_cols=64 Identities=20% Similarity=0.071 Sum_probs=43.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044044 176 NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 240 (508)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 240 (508)
+...+..+...|...|++++|+..|++..... +.+..+|..+..+|...|++++|++.|++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666677777777777777777766654 33455667777777777777777777776654
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.36 E-value=0.0062 Score=54.88 Aligned_cols=147 Identities=10% Similarity=0.056 Sum_probs=100.1
Q ss_pred hHHcCCCCCCcccHHHHHHHHHh--c---CChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHh---cCCcc--hHH---
Q 044044 97 MLRMHPSPPPVSSFNILFGCLAK--N---KHYDTVLSLFKRLNSAGLFPD-IYTHSILINCFCK---MGRVS--HGF--- 162 (508)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~--~a~--- 162 (508)
+.+..|. +..+|...+++... . .+..+|+.+|++.++. .|+ ...|..+.-++.. .+... ...
T Consensus 186 ~~~~~p~--~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~ 261 (372)
T 3ly7_A 186 LQKILPH--RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALN 261 (372)
T ss_dssp HHHHSCS--SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HhccCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHH
Confidence 3344454 88899988876543 2 3357899999999986 454 4445444433321 11111 111
Q ss_pred HHHHHHHh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044044 163 VVLGRILR-SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 163 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
..++.... ...+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 262 ~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 12222111 1225677888888877777899999999999999985 78888888899999999999999999999885
Q ss_pred CCCCCccccCCHhHHH
Q 044044 242 NGEFGVVCKPNTVTYN 257 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~ 257 (508)
.|...+|.
T Consensus 340 --------~P~~~t~~ 347 (372)
T 3ly7_A 340 --------RPGANTLY 347 (372)
T ss_dssp --------SCSHHHHH
T ss_pred --------CCCcChHH
Confidence 46666654
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.16 E-value=0.0011 Score=62.16 Aligned_cols=85 Identities=9% Similarity=-0.041 Sum_probs=44.1
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHH
Q 044044 406 NKDVEEALSLYSEMLSK---GIKPT----VVTYNTLFLGLFEIHQVERALKLFDEMRRN-----H-VAAD-TYTYNNFID 471 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~ 471 (508)
.|++++|+.++++.++. -+.|+ ..+++.|+.+|..+|++++|+.++++..+. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35556666665555432 11111 234555666666666666666666555421 1 1111 234556666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 044044 472 GLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 472 ~~~~~g~~~~A~~~~~~m~ 490 (508)
.|...|++++|..++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666654
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.15 E-value=0.0022 Score=60.25 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=72.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-----CC-CC-Chh
Q 044044 218 LINGLCRTGHTIVALNLFEEMANGNGE-FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-----NI-NP-DVV 289 (508)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~ 289 (508)
.+..+.+.|++++|+.++++..+.... +|...+....+++.++.+|...|++++|+.+++++... |. .| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355567889999999999999876432 22222233568889999999999999999999887542 21 11 245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 290 TYTSVIRGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 290 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 316 (508)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677888888888888888888887654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.0011 Score=62.32 Aligned_cols=93 Identities=6% Similarity=-0.115 Sum_probs=65.7
Q ss_pred hcCChHHHHHHHHHHHhCCC-CCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-----CC-CC-ChhhHHHHH
Q 044044 224 RTGHTIVALNLFEEMANGNG-EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDE-----NI-NP-DVVTYTSVI 295 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~ 295 (508)
..|++++|+.++++..+... .+|...+....+++.+..+|...|++++|+.++++.... |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788999999988776432 222222223467888999999999999999998887542 21 11 245677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 044044 296 RGFCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 296 ~~~~~~g~~~~a~~~~~~~~~ 316 (508)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877654
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.13 E-value=0.0058 Score=55.05 Aligned_cols=126 Identities=10% Similarity=-0.049 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHh---cC-Ch-hHH---HHHHHHHHhC-CCCCCHHhHHHHHHHHHhc
Q 044044 85 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAK---NK-HY-DTV---LSLFKRLNSA-GLFPDIYTHSILINCFCKM 155 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~~-~~A---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 155 (508)
.+..+|+.+|+++++..|. ...+|..+..++.. .+ .. ... ...++..... ..+.+...|..+...+...
T Consensus 213 ~~~~~A~~l~e~Al~lDP~--~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPE--FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 3468999999999999988 66666655555532 11 11 111 1122221111 1256788888887777778
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHH
Q 044044 156 GRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYN 216 (508)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 216 (508)
|++++|...+++++..+ |+...|..+...+.-.|+.++|.+.|++.... .|...+|.
T Consensus 291 gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 99999999999999885 67778888888999999999999999998887 45655554
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.07 E-value=0.11 Score=44.87 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhcCCCCC---HhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHH
Q 044044 193 IMEAAALFTKHRVFACEPD---VFTYNTLINGLCRT-----GHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLC 264 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (508)
...|...+++..+. .|+ -..|..+...|... |+.++|.+.|++..+.. ..-+..++......++
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln------P~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC------SAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC------CTTCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC------CCCCchHHHHHHHHHH
Confidence 45677777777766 444 45777788888774 88888888888888754 1113667777777777
Q ss_pred cc-CCHHHHHHHHHHHhhCCCC
Q 044044 265 KE-GFVDKAKELFLKMKDENIN 285 (508)
Q Consensus 265 ~~-g~~~~a~~~~~~~~~~~~~ 285 (508)
.. |+.+++.+.+++.......
T Consensus 251 ~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTTCHHHHHHHHHHHHHCCGG
T ss_pred HhcCCHHHHHHHHHHHHcCCCC
Confidence 74 8888888888888776544
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.03 E-value=0.004 Score=58.49 Aligned_cols=62 Identities=13% Similarity=-0.032 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 395 SYNTLINWYCKNKDVEEALSLYSEMLSK-----G-IKPT-VVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
+++.++.+|...|++++|+.+++++++. | ..|+ ..+++.|...|..+|++++|+.++++..+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444445555555444444321 1 1111 22344444444444444444444444443
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.01 E-value=0.0021 Score=46.06 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=31.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 400 INWYCKNKDVEEALSLYSEMLSKGIKPTVV-TYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
+..+...|++++|+..++++++.... +.. .+..+..++...|++++|++.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445556666666666655554221 334 5555555666666666666666665554
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.97 E-value=0.036 Score=57.15 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=106.7
Q ss_pred HHHHccCCHHHHHH-HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 044044 261 DGLCKEGFVDKAKE-LFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKM 339 (508)
Q Consensus 261 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 339 (508)
......+++++|.+ ++..+. +......++..+.+.|.+++|.++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 44456788888877 552221 122347777888889999998876632 11 113445778999
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 340 DKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
++|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999886433 3678999999999999999999999998753 445556666678877777776666
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 420 LSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
...|. ++....+|.+.|++++|++++.++.
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 66542 2344455666788888888776554
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.94 E-value=0.0026 Score=45.62 Aligned_cols=58 Identities=21% Similarity=0.132 Sum_probs=37.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 184 IKGLCAESRIMEAAALFTKHRVFACEPDVF-TYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
...+.+.|++++|+..|++..... +.+.. .+..+..++...|++++|++.|++....+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556677777777777666553 23445 66666777777777777777777766654
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.89 E-value=0.02 Score=59.03 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=96.3
Q ss_pred HHHHhcCCHHHHHH-HHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCH
Q 044044 296 RGFCYANDWNEAKR-LFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKI 374 (508)
Q Consensus 296 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (508)
......+++++|.+ ++..+ ++......++..+.+.|..++|.++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 34456789999877 55221 1122336777888899999998876632 11 112345678999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
++|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.+ |..+...+...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999986543 4778999999999999999999999998743 233444444455555555554444
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 455 RRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 455 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
...|. ++....+|.+.|++++|++++.++
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44321 222333344444555544444433
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.80 E-value=0.079 Score=39.38 Aligned_cols=139 Identities=11% Similarity=0.024 Sum_probs=72.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044044 335 KNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALS 414 (508)
Q Consensus 335 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 414 (508)
-.|..+++.++..+..... +..-||.+|--....-+-+-..++++.+-+. .|. ...|++.....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 3566666666666655442 4444555554444344444444444433221 111 12334444444
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044044 415 LYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKY 494 (508)
Q Consensus 415 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 494 (508)
.+-.+- -+...++..+..+..+|+-++-.+++..+.. +.+|++...-.+..+|.+-|+..+|.+++++..++|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 332221 1334445556666666777776666666543 2455666666677777777777777777777766665
Q ss_pred c
Q 044044 495 E 495 (508)
Q Consensus 495 ~ 495 (508)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.66 E-value=0.02 Score=44.22 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHH
Q 044044 374 IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNK---DVEEALSLYSEMLSKGIKP--TVVTYNTLFLGLFEIHQVERAL 448 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 448 (508)
...+++.|.+..+.+ .++..+...+..++++.+ +.++++.++++..+.. .| +...+..|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555555554544 356666666666666666 4556666666666643 12 2444555566666666666666
Q ss_pred HHHHHHHHC
Q 044044 449 KLFDEMRRN 457 (508)
Q Consensus 449 ~~~~~~~~~ 457 (508)
++++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666663
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.098 Score=41.48 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=95.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044044 330 MDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDV 409 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (508)
.......|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 45567889999999997765 3788999999999999999999999987642 34555667778888
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 410 EEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
++-.++-+.....|- ++.....+...|+++++.++|.+..+ .| -.+-.....|..+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 887777776666541 45556677789999999999865432 22 1222233467788888887776
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.64 E-value=0.011 Score=45.74 Aligned_cols=88 Identities=13% Similarity=0.050 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH---QVERALKLFDEMRRNHVAA--DTYTYNNFIDGLCKSGFVLEA 482 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 482 (508)
....+.+-|.+..+.+. ++..+...+..++++.+ ++++++.++++..+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 35567777777777655 68888899999999988 6779999999999864 23 344555677788999999999
Q ss_pred HHHHHHHHHcCCccCHH
Q 044044 483 LELFRAIRDSKYELNIV 499 (508)
Q Consensus 483 ~~~~~~m~~~g~~p~~~ 499 (508)
.+.++.+++ ++|+..
T Consensus 91 ~~y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHh--cCCCCH
Confidence 999999996 467543
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.60 E-value=0.018 Score=40.62 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
++|..++++..+.+ +.++.....+...+.+.|++++|+..|+++.+.
T Consensus 26 ~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 26 DEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444443 334444444444444444444444444444443
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.2 Score=39.75 Aligned_cols=131 Identities=13% Similarity=0.135 Sum_probs=89.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCCH
Q 044044 295 IRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDKI 374 (508)
Q Consensus 295 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (508)
.....+.|+++.|.++.+++ .+...|..+.......|+++-|.+.|.... | +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCH
Confidence 34456789999999987765 367889999999999999999999988764 2 34445556667888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
++-.++-+.....| -++.....+...|++++++++|.+. |..|... ......|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 87777766666554 1445556677789999999998553 2222211 1122356677788877665
Q ss_pred H
Q 044044 455 R 455 (508)
Q Consensus 455 ~ 455 (508)
-
T Consensus 142 ~ 142 (177)
T 3mkq_B 142 E 142 (177)
T ss_dssp T
T ss_pred C
Confidence 3
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.51 E-value=0.05 Score=38.29 Aligned_cols=68 Identities=10% Similarity=0.035 Sum_probs=43.8
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 174 TPNAVTFTSLIKGLCAESR---IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
+.++..+..+..++...++ .++|..++++..... +.++.+...+...+.+.|++++|+..|+.+...+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455566666655543333 567777777776664 3356666677777777777777777777777754
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.36 E-value=0.00062 Score=62.70 Aligned_cols=137 Identities=12% Similarity=0.108 Sum_probs=80.9
Q ss_pred CCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 044044 80 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (508)
+.++.+...+|++.|-++ .|+..|..++....+.|++++-+..+...++.. .+...=+.|+-+|++.+++.
T Consensus 63 AqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~ 133 (624)
T 3lvg_A 63 AQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 133 (624)
T ss_dssp HTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSS
T ss_pred HHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHH
Confidence 334445566666555322 366678888888888899998888887776653 34444567888888888876
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcC--------------------CCCCHhhHHHHH
Q 044044 160 HGFVVLGRILRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFA--------------------CEPDVFTYNTLI 219 (508)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~l~ 219 (508)
+-.+.+. .||..-...+.+-|...|.++.|.-+|..+.... -..++.||..+-
T Consensus 134 elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 134 ELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp TTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred HHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 5433321 2444444555555555566555555554332110 012456676666
Q ss_pred HHHHhcCChHHHH
Q 044044 220 NGLCRTGHTIVAL 232 (508)
Q Consensus 220 ~~~~~~g~~~~A~ 232 (508)
.+|...+++.-|.
T Consensus 207 ~ACvd~~EfrLAq 219 (624)
T 3lvg_A 207 FACVDGKEFRLAQ 219 (624)
T ss_dssp HHHHHSCTTTTTT
T ss_pred HHHhCchHHHHHH
Confidence 6666555554443
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.22 E-value=0.038 Score=47.69 Aligned_cols=107 Identities=10% Similarity=-0.068 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CCH
Q 044044 374 IDHARKLFVSMESNGCMHD---VVSYNTLINWYCKN-----KDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEI-HQV 444 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 444 (508)
...|..++++..+.+ |+ ...|..++..|... |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 578888888888874 55 56789999999884 99999999999999964432467777888888884 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 445 ERALKLFDEMRRNHVA--ADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 445 ~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
+++.+.+++....... |+....+. +.-++|..++.++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhH
Confidence 9999999999987655 55444433 23356666666554
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.14 E-value=4.1e-06 Score=76.65 Aligned_cols=265 Identities=13% Similarity=0.107 Sum_probs=161.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHH
Q 044044 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIK 185 (508)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (508)
.+..|..|..+....++..+|++-|=+. -|+..|..++.+..+.|.+++-+..+....+.. -++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 6678999999999999998888765332 255668889999999999999999887766552 34455568899
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHc
Q 044044 186 GLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCK 265 (508)
Q Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (508)
+|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------------~akLAstLV~ 182 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------------FGRLASTLVH 182 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------------CTTTSSSSSS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------------HHHHHHHHHH
Confidence 9999998766554443 56777778888999999999888877766543 2334444555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 044044 266 EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRL 345 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 345 (508)
.|++..|.+.-++. .++.||..+-.+|...+.+.-|.-.--.++-. +| -...++..|-..|.+++.+.+
T Consensus 183 L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 183 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITM 251 (624)
T ss_dssp CSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHH
Confidence 66665554332221 14556666666666666665554443333321 11 122344456666666666666
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 044044 346 LELMIWRGVNPNTYTYNTLIDGYCLTDKIDHARKLFVSMESN-GCMH------DVVSYNTLINWYCKNKDVEEAL 413 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~A~ 413 (508)
++..... -.....+|+.|.-.|++- ++++-++.++....+ +++. ....|..++-.|.+-.+++.|.
T Consensus 252 lEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 252 LEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6665522 123455566665555553 333333333322111 1111 2223556666666666666554
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.09 E-value=0.058 Score=38.91 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 391 HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKG------IKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.+..-+-.++..+.+.|+++.|...|+.+.+.. ..+....+..|..++.+.|+++.|+..++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355566678888888999999999988877641 1234667888888888999999999988888875
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.98 E-value=0.088 Score=37.92 Aligned_cols=66 Identities=14% Similarity=0.028 Sum_probs=46.9
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVSMESNG------CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
+..-+..+...+.+.|+++.|...|+.+.+.. -......+..+..++.+.|++++|+..++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556677777778888888888887765531 1234566777788888888888888888887764
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.77 E-value=0.078 Score=40.37 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=52.5
Q ss_pred CHHhHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCHH-hHHHHHH------HHHcCCCHHHHHHHHHHHHhCC
Q 044044 322 DVVTFSVIMDELCKNGKM------DKASRLLELMIWRGVNPNTY-TYNTLID------GYCLTDKIDHARKLFVSMESNG 388 (508)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~ 388 (508)
|..+|-..+...-+.|++ ++.+++|+++... ++|+.. .|...+. .+...++.++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 444454445555545555 5555666655543 333311 1111110 112235666666666666544
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044044 389 CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKP 426 (508)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 426 (508)
.+.-...|......-.+.|++.+|.+++.+.+..+.+|
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 22235555555555566667777777776666665543
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.70 E-value=0.049 Score=40.37 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=28.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 426 PTVVTYNTLFLGLFEIHQVER---ALKLFDEMRRNHVA-ADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
++..+-..+.+++.+..+... ++.+++.+.+.+.+ -.....-.|.-++.+.|++++|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444555554444333 44445444443210 0112222333344555555555555555553
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.69 E-value=0.11 Score=39.48 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044044 442 HQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDSK 493 (508)
Q Consensus 442 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 493 (508)
+++++|.++|+.+.+.+-.. ...|.....--.++|+.+.|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432222 4444444444455555555555555555443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.93 E-value=0.13 Score=38.15 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHH
Q 044044 374 IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEE---ALSLYSEMLSKGIKP--TVVTYNTLFLGLFEIHQVERAL 448 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 448 (508)
+..+.+.|......| .++..+--.+..++++..+... ++.+++++...+ .| .......|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444444444433 2555555555556666555444 666666665543 12 2334445556666666666666
Q ss_pred HHHHHHHHC
Q 044044 449 KLFDEMRRN 457 (508)
Q Consensus 449 ~~~~~~~~~ 457 (508)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666653
No 236
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.78 E-value=2 Score=37.82 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=47.2
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHhHH
Q 044044 251 PNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYA---NDWNEAKRLFIEMMDQGVQPDVVTFS 327 (508)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~ 327 (508)
-++.....+...|.+.|++.+|...|-.-. .-+...+..++.-+... |...++-- ..-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHH
Confidence 467788888999999999998888774211 11344555555444443 43333211 1111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 044044 328 VIMDELCKNGKMDKASRLLELMI 350 (508)
Q Consensus 328 ~l~~~~~~~~~~~~a~~~~~~~~ 350 (508)
. +--|.-.++...|..+++...
T Consensus 194 a-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 L-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp H-HHHHHHTTBHHHHHHHHHHHH
T ss_pred H-HHHHHHhcCHHHHHHHHHHHH
Confidence 2 223456678888888777654
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=3.2 Score=39.00 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--Hh
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESN--GCMHD---VVSYNTLINWYCKNKDVEEALSLYSEMLS----KGIKPT--VV 429 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~ 429 (508)
...|...|...|++.+|.+++..+... +.... ...+...++.|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 344556666666676666666665432 11111 23344555666666666666666665532 111111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 430 TYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
.+...+..+...+++.+|.+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555566666666666665554
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.34 E-value=1.2 Score=33.29 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 044044 289 VTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGV 354 (508)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 354 (508)
......+......|+-++..+++..+... .+|++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444444555555555555555553221 244444555555555555555555555555555543
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.28 E-value=5.6 Score=40.85 Aligned_cols=260 Identities=13% Similarity=0.087 Sum_probs=135.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-------CCChhhHHH
Q 044044 221 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENI-------NPDVVTYTS 293 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~ 293 (508)
+....|+.++++.+++........ ..+....-..+.-+....|..+++..++.......- .+....-..
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s----~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAa 458 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRA----SSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGAS 458 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCC----SCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCC----CcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHH
Confidence 455677888887777765542100 122233334444555566665677777766554311 011111122
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 044044 294 VIRGFCYAND-WNEAKRLFIEMMDQGVQPDVV--TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCL 370 (508)
Q Consensus 294 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (508)
+.-+..-.|. -+++.+.+..+....- .... .-..+...+.-.|+.+....++..+.+.. ..+..-...+.-++..
T Consensus 459 LGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 459 LGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhh
Confidence 2222222232 2455555655554321 1111 11123334556677777777777766542 1122222333344556
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 044044 371 TDKIDHARKLFVSMESNGCMHDVVSYN---TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 447 (508)
.|+.+.+..+.+.+.... .| ..-|. ++.-+|+..|+.....+++..+.+. ...+..-...+.-++...|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 788888888888877642 12 22232 3345677888877777788888765 222333334444455556776667
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 044044 448 LKLFDEMRRNHVAADTYTYNNFIDGLCKSGFV-LEALELFRAIR 490 (508)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 490 (508)
.++++.+.+.+ .|....-..+.-+....|.. .+++.++..+.
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 77776665542 33333333344444445543 56777777776
No 240
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.13 E-value=4.8 Score=39.50 Aligned_cols=150 Identities=7% Similarity=-0.106 Sum_probs=72.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHh----HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044044 338 KMDKASRLLELMIWRGVNPNTYT----YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEAL 413 (508)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (508)
+.+.|...+....+... .+... +..+.......+...++...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 55666666666544321 12221 222222223334233444444443332 233333333333344556777777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH------------CCCCC-------C-----HH---HH
Q 044044 414 SLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR------------NHVAA-------D-----TY---TY 466 (508)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~~~~-------~-----~~---~~ 466 (508)
..|+.|..... ........+..++...|+.++|..+|+.+.+ .|.++ + .. .-
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 384 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPE 384 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHH
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChH
Confidence 76666554311 1233344555566666777777666665432 12111 0 00 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 467 NNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 467 ~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
...+..+...|....|...+..+.+
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHh
Confidence 1234557788999999888887765
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.12 E-value=1.4 Score=41.39 Aligned_cols=194 Identities=12% Similarity=-0.006 Sum_probs=117.0
Q ss_pred CChHHHHHHHHHhHHcCC----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH----hcC
Q 044044 85 ITPNEALCIFDYMLRMHP----SPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFC----KMG 156 (508)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 156 (508)
|++++|++.+-.+.+... ..........++..|...|+++...+.+..+.+..... ...-..+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 567888877765554321 11234567778888999999999988887775543222 222233343332 233
Q ss_pred CcchHH--HHHHHHHh--CC-CCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CC----HhhHHHHHHHHH
Q 044044 157 RVSHGF--VVLGRILR--SC-FTP---NAVTFTSLIKGLCAESRIMEAAALFTKHRVFACE-PD----VFTYNTLINGLC 223 (508)
Q Consensus 157 ~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~ 223 (508)
..+... .+.+.... .| +-. .......|...+...|++.+|..++..+...-.. .+ ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322211 11111110 11 111 1233456788899999999999999997643111 12 346777889999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCccccCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 224 RTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 224 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
..+++..|..+++++....... ..+|+ ...+...+..+...++|.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999875311000 02222 23566677778888999988888777654
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.00 E-value=0.29 Score=45.17 Aligned_cols=58 Identities=5% Similarity=0.017 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 397 NTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR 455 (508)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (508)
..++..+...|++++|+..+..+.... +.+...+..++.++...|+..+|++.|+.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555554432 2244455555555555555555555555443
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.96 E-value=6.4 Score=40.40 Aligned_cols=153 Identities=13% Similarity=0.116 Sum_probs=64.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHH---HHHHHHHcCCCH
Q 044044 298 FCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYN---TLIDGYCLTDKI 374 (508)
Q Consensus 298 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~ 374 (508)
+...|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+... ..|. .-|. ++.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCH
Confidence 344555555555555554421 111111122222333556666666665555542 1111 1121 223445556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHH
Q 044044 375 DHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQV-ERALKLFDE 453 (508)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 453 (508)
....++++.+.+.. ..++...-.+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|+. .+++..+..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 55555666655431 1122222222223334455555555555444432 23333223333333333332 455555555
Q ss_pred HH
Q 044044 454 MR 455 (508)
Q Consensus 454 ~~ 455 (508)
+.
T Consensus 655 L~ 656 (963)
T 4ady_A 655 LT 656 (963)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.32 Score=48.63 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=23.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 439 FEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
...|+++.|+++-++.... .+.+..+|..|..+|...|+++.|+-.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3444555555555544443 2223445555555555555555555444444
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.25 E-value=4.9 Score=36.78 Aligned_cols=241 Identities=10% Similarity=0.040 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhC-CCCC---ChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHhH--
Q 044044 254 VTYNTIIDGLCKEGFVDKAKELFLKMKDE-NINP---DVVTYTSVIRGFCYA-NDWNEAKRLFIEMMDQGVQPDVVTF-- 326 (508)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~-- 326 (508)
.....+...|.+.|+.++..+++...... +.-+ .......++..+... +..+.-.++..+..++.. -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45567889999999999999998876432 1111 233455677777664 445555555555554311 111222
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHH
Q 044044 327 ----SVIMDELCKNGKMDKASRLLELMIWRGVNPN-----TYTYNTLIDGYCLTDKIDHARKLFVSMESN--GCMHDVVS 395 (508)
Q Consensus 327 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 395 (508)
..++..|...|++.+|.+++..+.+.-...| ..++..-++.|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2578889999999999999988876421112 335666678899999999999999776543 12234433
Q ss_pred HHH----HHHHHH-hcCCHHHHHHHHHHHHHC-C-C-CC---CHhHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCH
Q 044044 396 YNT----LINWYC-KNKDVEEALSLYSEMLSK-G-I-KP---TVVTYNTLFLGLFEIHQVERALKLF-DEMRRNHVAADT 463 (508)
Q Consensus 396 ~~~----l~~~~~-~~g~~~~A~~~~~~~~~~-~-~-~p---~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~ 463 (508)
-.. -+..+. ..++|.+|...|-+..+. . . .| +...|..|... -.++..+...++ .+....-..|+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhccccccccCCccH
Confidence 222 233456 789999999988776532 1 1 11 12233222222 223322222222 121111134555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHH
Q 044044 464 YTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIV 499 (508)
Q Consensus 464 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 499 (508)
..+..++.+| ..|++.+...+++.... .+..|..
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 5566676665 55777777666665432 2344443
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.18 E-value=1.4 Score=32.86 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 391 HDVVSYNTLINWYCKNKD---VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRR 456 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (508)
|+..+--....++++..+ ..+++.+++++.+.+..-....+..|.-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444344444444433 234455555544433111233344444455555555555555555554
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.86 Score=45.63 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHHHHHHHHc
Q 044044 461 ADTYTYNNFIDGLCKSGFVLEALELFRAIRDSKYELNIVSYNCLID 506 (508)
Q Consensus 461 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 506 (508)
-+..-|..|.....|.+++++|.+.|+..+.. +-+...+..||+
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLe 654 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLK 654 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHH
Confidence 35556888888888899999999999888854 456666666664
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.46 E-value=5.5 Score=35.31 Aligned_cols=83 Identities=5% Similarity=0.018 Sum_probs=48.1
Q ss_pred cCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 044044 250 KPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVI 329 (508)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (508)
.-|......+...|.+.+++.+|...|- . |..+++..+..++.-+...+...+ .+...-..+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHH
Confidence 3467777888899999999999888773 1 233334566555544444332111 122222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 044044 330 MDELCKNGKMDKASRLLELMIW 351 (508)
Q Consensus 330 ~~~~~~~~~~~~a~~~~~~~~~ 351 (508)
+ -|...++...|..+++...+
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHHH
Confidence 2 35556788888777665553
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.20 E-value=4 Score=43.74 Aligned_cols=142 Identities=12% Similarity=0.045 Sum_probs=76.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-----------
Q 044044 218 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLKMKDENINP----------- 286 (508)
Q Consensus 218 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------- 286 (508)
++..+...+.++.+.++... ++.+......++.++...|++++|.+.|++.... +..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~ 885 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREF 885 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhh-----------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhccc
Confidence 44445555666555554432 2334444456677777888888888888765321 100
Q ss_pred ------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044044 287 ------------DVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDV----VTFSVIMDELCKNGKMDKASRLLELMI 350 (508)
Q Consensus 287 ------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 350 (508)
-..-|..++..+.+.+.++.+.+.-...++...+.+. ..|..+.+.+...|++++|...+-.+.
T Consensus 886 ~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 886 QEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 1123455666666666666666666555543211111 145566666667777777766666555
Q ss_pred HcCCCCCHHhHHHHHHHHHcCCC
Q 044044 351 WRGVNPNTYTYNTLIDGYCLTDK 373 (508)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~ 373 (508)
.... -......|+...+..|.
T Consensus 966 d~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 966 TTPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HSSS--CHHHHHHHHHHHHHHCC
T ss_pred CHHH--HHHHHHHHHHHHHhCCC
Confidence 4322 23445555544444433
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.07 E-value=3 Score=31.48 Aligned_cols=68 Identities=10% Similarity=0.104 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 390 MHDVVSYNTLINWYCKNKD---VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.++..+--....++.+..+ ..+++.+++++...+..-.......|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455554455555555543 3345566666555432223334445555666666666666666666653
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.49 E-value=1.1 Score=31.24 Aligned_cols=62 Identities=10% Similarity=0.170 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044044 408 DVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFI 470 (508)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 470 (508)
|.=+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-++.+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 44456666666666666777777777777777777777777777766644 222233455444
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.45 E-value=0.9 Score=41.85 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhH
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLS-----KGIKPTVVT 430 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 430 (508)
..++..+...|+++++...+..+.... +.+...|..+|.++...|+..+|++.|+++.+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345556666777777777766666553 55666777777777777777777777766543 266666654
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.21 E-value=1.8 Score=33.67 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 044044 181 TSLIKGLCAESRIMEAAALFTKHR 204 (508)
Q Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~ 204 (508)
.-+..+|.+.+++++|+.+++.+.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335555566666666666665543
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.21 E-value=4.3 Score=28.43 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 192 RIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
+.-+..+-++.+......|++.+..+.+.+|.+.+++..|.++|+.++.+- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-------~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-------cCchhhHHHHH
Confidence 444666667777777777888888888888888888888888888877663 23344565554
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.20 E-value=5.5 Score=29.66 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=27.5
Q ss_pred CCHhHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 426 PTVVTYNTLFLGLFEIHQV---ERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 490 (508)
|+..+-..+.+++.+..+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444444444432 2344444444443211112233333444445555555555555444
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.11 E-value=11 Score=40.44 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 044044 253 TVTYNTIIDGLCKEGFVDKAKELFLKMKDENINPD----VVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSV 328 (508)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 328 (508)
..-|..++..+.+.+.++.+.++-....+.....+ ...|..+...+...|++++|...+-.+..... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 34566666677777777777666665554321111 12456666777777777777777766655433 2345555
Q ss_pred HHHHHHhcCChhH
Q 044044 329 IMDELCKNGKMDK 341 (508)
Q Consensus 329 l~~~~~~~~~~~~ 341 (508)
++..++..|..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 6655555555443
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.88 E-value=4.3 Score=30.17 Aligned_cols=49 Identities=6% Similarity=0.130 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 409 VEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 409 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.=+..+-++.+....+.|++......+.+|.+.+|+..|.++|+-.+.+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3344555555555556666666666666666666666666666655543
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.28 E-value=3.4 Score=32.15 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=25.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC-CCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 257 NTIIDGLCKEGFVDKAKELFLKMKDE-NINPDV-------VTYTSVIRGFCYANDWNEAKRLFIEM 314 (508)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 314 (508)
..-+..+...|.++.|+-+.+.+... +..++. .++..+.+++...|++..|...|++.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33444455555555555555443321 011221 12333444455555555555555554
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.74 E-value=5.2 Score=27.89 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=20.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 438 LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
+...|++++|..+.+.+ ..||.+.|-+|- -.+.|..+++...+.++..+
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 34444444444443322 134444443332 22444444444444444433
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.52 E-value=7.5 Score=28.91 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCCHhHHHHHH
Q 044044 193 IMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYNTII 260 (508)
Q Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (508)
.-+..+-++.+....+.|++.+....+.+|.+.+|+..|..+|+-++.+- .+....|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-------~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-------CCchhhHHHHH
Confidence 34555666666666777888888888888888888888888888877663 33344565554
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.99 E-value=4.9 Score=27.94 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=20.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 438 LFEIHQVERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
+...|++++|..+.+.+ ..||.+.|-+|- -.+.|..+++...+.++..+
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 34444444444443322 234444443332 23444444444444444433
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.33 E-value=4.6 Score=37.67 Aligned_cols=98 Identities=13% Similarity=-0.017 Sum_probs=57.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhH--HH
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNG--CMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK---GIKPTVVT--YN 432 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~--~~ 432 (508)
+...+...|.+.|++++|.+.+.++.... ...-...+-.++..+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667777777777777777777776542 1223455666677777777777777777766432 22222221 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 433 TLFLGLFEIHQVERALKLFDEMRRN 457 (508)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (508)
.-+..+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2223344566777777666665543
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.95 E-value=12 Score=28.28 Aligned_cols=68 Identities=7% Similarity=-0.060 Sum_probs=35.6
Q ss_pred CCCHHhHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 355 NPNTYTYNTLIDGYCLTDK---IDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+........-.+.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444445555555543 3345556666555432123333344555566666666666666666664
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.66 E-value=35 Score=33.45 Aligned_cols=116 Identities=9% Similarity=0.004 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 044044 372 DKIDHARKLFVSMESNGCMHDVVSYN----TLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERA 447 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 447 (508)
.+.+.|...+....+.. ..+..... .++......+...++...+....... .+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37899999998886543 23333332 22223334453556677776655543 3333344455555678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 448 LKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+.|+.|...... ...-.--+.+++.+.|+.++|..+|+++..
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999988764222 233233456678889999999999999874
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.40 E-value=2.3 Score=36.14 Aligned_cols=53 Identities=9% Similarity=0.054 Sum_probs=42.7
Q ss_pred CCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044044 82 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSA 136 (508)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (508)
++.|++++|+.....-++..|. |...-..++..++-.|++++|.+-++.+.+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4567888888888888888877 8878888888888888888888888777664
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.63 E-value=20 Score=33.35 Aligned_cols=99 Identities=7% Similarity=-0.070 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc---CCCCCHhh--HH
Q 044044 144 THSILINCFCKMGRVSHGFVVLGRILRS--CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF---ACEPDVFT--YN 216 (508)
Q Consensus 144 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~~ 216 (508)
+...+...+.+.|+++.|.+.+.++... +...-...+-..++.+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888888999999999999888753 33344567777888888889999999888886543 21222211 11
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 044044 217 TLINGLCRTGHTIVALNLFEEMANGN 242 (508)
Q Consensus 217 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 242 (508)
.-+..+...+++..|-..|-+.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11223446789999988888776543
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.31 E-value=29 Score=30.79 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044044 391 HDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADTYTYNNFI 470 (508)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 470 (508)
-|+.....+...|.+.+++.+|...| + .|-.+....|..++.-+...+... ..|...-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~--i--lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL--V--LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH--T--TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH--H--hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH
Confidence 36677777788888888888887776 2 133333355554444433333211 11222222233
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 044044 471 DGLCKSGFVLEALELFRAIR 490 (508)
Q Consensus 471 ~~~~~~g~~~~A~~~~~~m~ 490 (508)
-|.-.|+...|..+++...
T Consensus 196 -~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHH
Confidence 3555677777777666655
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.31 E-value=27 Score=30.60 Aligned_cols=25 Identities=24% Similarity=0.061 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044044 392 DVVSYNTLINWYCKNKDVEEALSLY 416 (508)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (508)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6667777777777777777777765
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.25 E-value=13 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=7.6
Q ss_pred HHHhcCChHHHHHHHH
Q 044044 221 GLCRTGHTIVALNLFE 236 (508)
Q Consensus 221 ~~~~~g~~~~A~~~~~ 236 (508)
.+...|+|++|..+.+
T Consensus 49 SLmNrG~Yq~Al~l~~ 64 (116)
T 2p58_C 49 SLMNRGDYASALQQGN 64 (116)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHcchhHHHHHHhcC
Confidence 3444555555554443
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.60 E-value=6.4 Score=33.51 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=37.2
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSK 422 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (508)
...+.|++++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456677777777776666654 556666667777777777777777777666664
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.43 E-value=12 Score=26.04 Aligned_cols=13 Identities=31% Similarity=0.370 Sum_probs=6.0
Q ss_pred HHhcCChHHHHHH
Q 044044 222 LCRTGHTIVALNL 234 (508)
Q Consensus 222 ~~~~g~~~~A~~~ 234 (508)
+...|+|++|..+
T Consensus 49 LmNrG~Yq~Al~l 61 (115)
T 2uwj_G 49 LANQGRYQEALAF 61 (115)
T ss_dssp HHHTTCHHHHHGG
T ss_pred HHcchhHHHHHHh
Confidence 3444444444444
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.56 E-value=22 Score=28.72 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 044044 339 MDKASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH 391 (508)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 391 (508)
..+...+|..|...|+... ...|......+...|++.+|.++|+.-++.+..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455666666655554433 3345555555555666666666666655555444
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.86 E-value=28 Score=28.12 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044044 390 MHDVVSYNTLINWYCK--NKDVEEALSLYSEMLSKGIKP-TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAA 461 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 461 (508)
..|+.-....+..--. .++..++..+|..|...|+-- -...|......+...|++++|.++|+.-++.+-.|
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3455544443332222 455778888998888775432 35567778888888899999999998888887777
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.59 E-value=54 Score=29.91 Aligned_cols=27 Identities=19% Similarity=0.025 Sum_probs=16.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 044044 178 VTFTSLIKGLCAESRIMEAAALFTKHR 204 (508)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 204 (508)
.....|...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666777666666666544
No 275
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=71.58 E-value=31 Score=28.77 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=11.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 044044 365 IDGYCLTDKIDHARKLFVSME 385 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~ 385 (508)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 445555555555555555443
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.51 E-value=47 Score=29.82 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 044044 362 NTLIDGYCLTDKIDHARKLFVSME 385 (508)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~ 385 (508)
..++.-|...|+.++|...++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 444555555566666666655553
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.30 E-value=46 Score=25.46 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 044044 342 ASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH 391 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 391 (508)
...+|..|...|+... ...|......+...|++++|.++|+.-++.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555544443322 3334444444444555555555555544444333
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.69 E-value=59 Score=29.17 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=21.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 044044 255 TYNTIIDGLCKEGFVDKAKELFLKMKD 281 (508)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (508)
....++.-|...++.++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 446678888889999999999888753
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.89 E-value=61 Score=24.79 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044044 412 ALSLYSEMLSKGIKP-TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAA 461 (508)
Q Consensus 412 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 461 (508)
+..+|..|...|+-- -...|......+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555443321 22334444444555555555555555555544444
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.66 E-value=70 Score=24.82 Aligned_cols=50 Identities=10% Similarity=0.146 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 044044 342 ASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH 391 (508)
Q Consensus 342 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 391 (508)
...+|..|...|+... ...|......+...|++.+|.++|+.-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3444555555444322 3334444444444555555555555555444444
No 281
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=52.58 E-value=73 Score=24.95 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 464 YTYNNFIDGLCKSGFVLEALELFRAI 489 (508)
Q Consensus 464 ~~~~~li~~~~~~g~~~~A~~~~~~m 489 (508)
..++.+...|...|+.+||+..+..-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 45666777888899999999887543
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.15 E-value=81 Score=24.48 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 044044 390 MHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKP-TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAADT 463 (508)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 463 (508)
..|+.-....+..--..+ .+..+|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 60 knD~RyLklWl~ya~~~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp TTCHHHHHHHHHHHHHCS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 345554444443222233 3667788888775443 3456677777788888888888888888887777743
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.80 E-value=54 Score=26.91 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=13.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCC
Q 044044 260 IDGLCKEGFVDKAKELFLKMKDENIN 285 (508)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 285 (508)
+...+..|+.+.+..+++.+.+.+..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 33445556666666666555544443
No 284
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=49.55 E-value=1.2e+02 Score=26.42 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044044 396 YNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ--VERALKLFDEMRRNHVAADTYTYNNF 469 (508)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 469 (508)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+...+++..+.+.|+-+.......+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 456777888899999999999888532111 12334444455554433 45677788888776665444443333
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.70 E-value=65 Score=27.14 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=9.4
Q ss_pred HHHHHhcCChhHHHHHHH
Q 044044 114 FGCLAKNKHYDTVLSLFK 131 (508)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~ 131 (508)
+...++.|+.+....+++
T Consensus 9 L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 444456677654444443
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.32 E-value=84 Score=25.84 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044044 410 EEALSLYSEMLSKGIKP-TVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVAA 461 (508)
Q Consensus 410 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 461 (508)
+.+..+|..|...|+-- -...|......+...|++++|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 46677888888775543 34567777778888888888888888888777776
No 287
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=44.14 E-value=2e+02 Score=26.72 Aligned_cols=34 Identities=18% Similarity=0.012 Sum_probs=16.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 044044 336 NGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYC 369 (508)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (508)
.++.+.|+.++.+|++.|..|....-..+..+.-
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~e 301 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASE 301 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3455555556666655554444333333333333
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.60 E-value=1.8e+02 Score=27.58 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=38.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH--HhH-HHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044044 323 VVTFSVIMDELCKNGKMDKASRLLELMIWRGV-NPNT--YTY-NTLIDGYCLTDKIDHARKLFVSMESN 387 (508)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (508)
...++.++..|...+.++.|..+.....--.. .++. ..| -.+...+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44677777777778888888877776641100 1111 112 12345555677777777777776654
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.98 E-value=2.1e+02 Score=29.78 Aligned_cols=48 Identities=8% Similarity=0.020 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHcCC
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNT----YTYNTLIDGYCLTD 372 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 372 (508)
-|..++..+-+.+-++.+.++-+.+++.--..|. ..|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5678888999999999999988888865322233 35666666665443
No 290
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=42.20 E-value=1.3e+02 Score=24.12 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=16.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 044044 406 NKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIH 442 (508)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (508)
-.+.+.|+-++.+|++.| .|....-..++.+....|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 345555555555555555 443333333333333333
No 291
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=41.60 E-value=6.1 Score=28.64 Aligned_cols=77 Identities=9% Similarity=-0.033 Sum_probs=54.6
Q ss_pred hccCCCCCCCCChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 75 KSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK 154 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (508)
.++|..|-..+++++++.+.. .-..|.-.|...+.+|+.+-|.++++...+.| +...|.+.+..|-.
T Consensus 10 ~~~~~~ykkN~rw~qSI~L~K----------kDkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYd 76 (125)
T 3qil_A 10 HSSGLVPRGSHMWKQSVELAK----------KDSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYD 76 (125)
T ss_dssp SSCCCCSSSCCCCSSCCCCCS----------CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTT
T ss_pred ccccchhhccccHHHHHHHHH----------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHh
Confidence 356777777778877765542 23346666777778899999999999998866 66777788877776
Q ss_pred cCCcchHHHH
Q 044044 155 MGRVSHGFVV 164 (508)
Q Consensus 155 ~g~~~~a~~~ 164 (508)
.=+++-++++
T Consensus 77 LlrpDvVLEl 86 (125)
T 3qil_A 77 LLRPDVVLEL 86 (125)
T ss_dssp CSCTTHHHHT
T ss_pred ccChHHHHHH
Confidence 6666655443
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.45 E-value=1.8e+02 Score=30.31 Aligned_cols=110 Identities=12% Similarity=0.129 Sum_probs=53.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 044044 364 LIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKDVEEALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQ 443 (508)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (508)
++..+...|..+-|.++...+ +.++..--.++.+|...|++++|..+|+++-. |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------
Confidence 445555566666555433222 23443333456677777888888888766432 22211100000
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044044 444 VERALKLFDEMRRNHVAADTYTYNNFIDGLCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 491 (508)
.+....++... +. .......|..++..+.+.|.++.+.++-+..++
T Consensus 880 ~~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 880 LREFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp GHHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 00000111100 00 011223567777777777777777777666664
No 293
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.44 E-value=73 Score=24.63 Aligned_cols=45 Identities=9% Similarity=-0.032 Sum_probs=20.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCC
Q 044044 148 LINCFCKMGRVSHGFVVLGRILRS--CFTPNAVTFTSLIKGLCAESR 192 (508)
Q Consensus 148 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 192 (508)
++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444455555555555444 333444443334444444443
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.52 E-value=1.1e+02 Score=25.23 Aligned_cols=51 Identities=6% Similarity=0.130 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCCCC-HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 044044 341 KASRLLELMIWRGVNPN-TYTYNTLIDGYCLTDKIDHARKLFVSMESNGCMH 391 (508)
Q Consensus 341 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 391 (508)
....+|..|...|+... ...|......+...|++.+|.++|+.-++.+..|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555555554433 3344555555555566666666665555554444
No 295
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.60 E-value=1.5e+02 Score=23.74 Aligned_cols=21 Identities=14% Similarity=0.068 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCC
Q 044044 371 TDKIDHARKLFVSMESNGCMH 391 (508)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~ 391 (508)
-.+.+.|+-.+-+|++.|..|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 345555555555555554333
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.23 E-value=1.7e+02 Score=24.27 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=15.1
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 044044 357 NTYTYNTLIDGYCLTDKIDHARKLFVS 383 (508)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (508)
+.......+..+.+.|+.++|.++|=+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 444444555556666666666665543
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.03 E-value=1.3e+02 Score=22.89 Aligned_cols=65 Identities=15% Similarity=0.278 Sum_probs=35.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 044044 360 TYNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD--VEEALSLYSEMLSKGIK 425 (508)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~ 425 (508)
....++.-|...|+.++|...++++.... .....+...+..++-+.++ .+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 35566777777788888887777764211 1122233334444443222 34566666666665443
No 298
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.53 E-value=1.4e+02 Score=23.04 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=35.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 044044 438 LFEIHQVERALKLFDEMRRNHVAA--DTYTYNNFID-G-----LCKSGFVLEALELFRAIRD 491 (508)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 491 (508)
+...|++-+|.++|+..-.....+ +...|..||. . -.+.|+...|..++++...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334577778877777776654444 4556666666 2 1456788888888777764
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.31 E-value=1.4e+02 Score=22.82 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcCCC--HHHHHHHHHHHHhCC
Q 044044 325 TFSVIMDELCKNGKMDKASRLLELMIWRGVNPNTYTYNTLIDGYCLTDK--IDHARKLFVSMESNG 388 (508)
Q Consensus 325 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~ 388 (508)
....++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+....++..+...+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 345566677777777777777777632111 112233334444444322 344555555555544
No 300
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=35.95 E-value=1.1e+02 Score=21.23 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=12.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044044 449 KLFDEMRRNHVAADTYTYNNFIDGLCKS 476 (508)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~li~~~~~~ 476 (508)
++.+++...|+.|+..+...++..|...
T Consensus 30 ~L~eEfdefGi~~~d~VldKc~ELC~~y 57 (101)
T 2keb_A 30 QLAEELQIFGLDCEEALIEKLVELCVQY 57 (101)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 3333444444444444444444444333
No 301
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=35.42 E-value=1.3e+02 Score=25.09 Aligned_cols=13 Identities=8% Similarity=-0.207 Sum_probs=6.3
Q ss_pred HHHHHhcCCcchH
Q 044044 149 INCFCKMGRVSHG 161 (508)
Q Consensus 149 ~~~~~~~g~~~~a 161 (508)
+...++.|+.+..
T Consensus 9 L~~A~~~g~~~~v 21 (285)
T 1wdy_A 9 LIKAVQNEDVDLV 21 (285)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHH
Confidence 3444555665433
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.41 E-value=1.4e+02 Score=22.56 Aligned_cols=59 Identities=8% Similarity=0.106 Sum_probs=31.1
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 044044 279 MKDENINPDVVTYTSVIRGFCYANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK 338 (508)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (508)
+.+.|..++ ..-..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 444555432 33445555555555566667777766665544455555555555555553
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.10 E-value=3e+02 Score=26.13 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HhH-HHHHHHHHhcCCcchHHHHHHHHHhC
Q 044044 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSAGL-FPDI--YTH-SILINCFCKMGRVSHGFVVLGRILRS 171 (508)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~ 171 (508)
..+|.+++.|...+.++.|..+..+..--.. .++. ..| -.+.+.+.-.+++.+|.+.+..+.+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4666677777777777777777766631100 1111 112 22345555666777777766666554
No 304
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.43 E-value=1.8e+02 Score=23.34 Aligned_cols=34 Identities=12% Similarity=-0.022 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 044044 266 EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFC 299 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (508)
-.+.+.|+-++-+|++.|..|.-..-..++-+..
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4566666666667766665554444444444433
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.22 E-value=1.3e+02 Score=23.63 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=7.1
Q ss_pred HhcCChhHHHHHHH
Q 044044 118 AKNKHYDTVLSLFK 131 (508)
Q Consensus 118 ~~~g~~~~A~~~~~ 131 (508)
+..|+.+....+++
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34555555555443
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.78 E-value=1.6e+02 Score=22.68 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=33.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 044044 265 KEGFVDKAKELFLKMKDENINP--DVVTYTSVIR-G-----FCYANDWNEAKRLFIEMMD 316 (508)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 316 (508)
..|++=+|.++++..-.....+ ....|..||+ . ..+.|++..|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888876553333 3445566665 2 2346777777777777654
No 307
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.54 E-value=1.7e+02 Score=23.71 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=14.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCC
Q 044044 115 GCLAKNKHYDTVLSLFKRLNSAGLF 139 (508)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~ 139 (508)
...++.|+.+.+..+++.+.+.|..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3345567777666666665555533
No 308
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=33.36 E-value=57 Score=20.14 Aligned_cols=30 Identities=27% Similarity=0.173 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhHHcCCCCCCcccHHHHHHHH
Q 044044 87 PNEALCIFDYMLRMHPSPPPVSSFNILFGCL 117 (508)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (508)
.++|...|-++++.+.. ++.-+|...+...
T Consensus 2 ~eEae~aF~~lL~~~~V-~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQV-DSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTC-CSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCC-CCCCcHHHHHHHh
Confidence 35677777777776655 4555677766666
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.29 E-value=1.4e+02 Score=21.88 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSME 385 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (508)
...++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3445555666666666666666553
No 310
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=32.82 E-value=65 Score=20.35 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHh
Q 044044 179 TFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCR 224 (508)
Q Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (508)
.++.++..++...-.++++..+++....| ..+..+|..-++.+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34555555555555666666666666665 4455555554444443
No 311
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.39 E-value=2.2e+02 Score=23.11 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHhCC
Q 044044 372 DKIDHARKLFVSMESNG 388 (508)
Q Consensus 372 g~~~~A~~~~~~~~~~~ 388 (508)
.+.+.|+-.+-+|++.|
T Consensus 49 SDpDAALywLaRMl~~G 65 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAG 65 (213)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44445555555554444
No 312
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.28 E-value=2.2e+02 Score=23.10 Aligned_cols=55 Identities=9% Similarity=-0.034 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCC
Q 044044 266 EGFVDKAKELFLKMKDENINPDVVTYTSVIRGFCYAND-----WNEAKRLFIEMMDQGVQ 320 (508)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~ 320 (508)
-.+.+.|+-++-+|++.|-.|.-..-..++-+...-|. ...|...++.....|.+
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45677777777777776655554444444444444332 23344444444444443
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.21 E-value=1.6e+02 Score=21.57 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=10.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 044044 398 TLINWYCKNKDVEEALSLYSEM 419 (508)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~ 419 (508)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444455555555555554
No 314
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.12 E-value=2.2e+02 Score=23.16 Aligned_cols=22 Identities=5% Similarity=-0.117 Sum_probs=11.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 044044 220 NGLCRTGHTIVALNLFEEMANG 241 (508)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~~~~~ 241 (508)
..|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3445555555555555555444
No 315
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.44 E-value=1.1e+02 Score=26.12 Aligned_cols=22 Identities=32% Similarity=0.271 Sum_probs=11.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 044044 400 INWYCKNKDVEEALSLYSEMLS 421 (508)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~ 421 (508)
+...+..|+.+-+.-+++.-..
T Consensus 165 L~~A~~~g~~~~v~~Ll~~gad 186 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDYMTS 186 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHcCCC
Confidence 3444566666655555554333
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.36 E-value=1.8e+02 Score=21.78 Aligned_cols=42 Identities=2% Similarity=-0.115 Sum_probs=18.5
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 150 NCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 191 (508)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (508)
..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333333444445555555544443344444444444444444
No 317
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=28.76 E-value=6e+02 Score=27.64 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHhHHcCCCCCCcccHHHHHHHHHh
Q 044044 86 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAK 119 (508)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 119 (508)
+.+++.++|+++++.+|. ....+..++..+-.
T Consensus 1122 ~~~~~~~~~~~l~~~~P~--~l~~~~~~l~~l~~ 1153 (1354)
T 3lxu_X 1122 ELEMAEKIYNDVVAAHPK--HLQANLLLIQNIES 1153 (1354)
T ss_dssp CHHHHHHHHHHHHHHCTT--CTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCc--cHHHHHHHHHhhhh
Confidence 568899999999999988 77788887776653
No 318
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.66 E-value=1.9e+02 Score=21.73 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=25.2
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 133 LNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 191 (508)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (508)
+.+.|+.+... -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34444444332 222333333334 4556666666655544444444333344444333
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.12 E-value=1.5e+02 Score=21.86 Aligned_cols=59 Identities=10% Similarity=0.239 Sum_probs=31.8
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 044044 279 MKDENINPDVVTYTSVIRGFCYAN-DWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGK 338 (508)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (508)
+.+.|...+. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4445555442 3444555555554 566677777777666545555555555555555443
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.92 E-value=1.5e+02 Score=22.89 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=30.5
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhc--CCCCCHhhHHHHHHHHHhcCCh
Q 044044 171 SCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVF--ACEPDVFTYNTLINGLCRTGHT 228 (508)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 228 (508)
.|...+. .-..++..+...+..-.|.++++.+... +...+..|...-+..+...|-.
T Consensus 27 ~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 27 GGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred cCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444433 2233444555555556666666666655 4445555555555666666644
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.55 E-value=2.9e+02 Score=24.42 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 044044 180 FTSLIKGLCAESRIMEAAALFTKHR 204 (508)
Q Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~ 204 (508)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3445556666666666666666553
No 322
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.12 E-value=3.1e+02 Score=23.85 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 044044 361 YNTLIDGYCLTDKIDHARKLFVSMESNGCMHDVVSYNTLINWYCKNKD--VEEALSLYSEMLSKGIKPT 427 (508)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~ 427 (508)
...++.-|...|+.++|.+.++++.... .........+..+.-+.++ .+....++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 4567778888899999999998885321 1122333444444444333 4556677777776655433
No 323
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.97 E-value=2e+02 Score=21.55 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 044044 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (508)
+..-..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+.+.|-+.
T Consensus 18 T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp CHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 334455666666666 6789999999988876667777777777888777544
No 324
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.91 E-value=3.8e+02 Score=24.80 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=19.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 044044 301 ANDWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNG 337 (508)
Q Consensus 301 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 337 (508)
.++.+.|+.++..|.+.|..|....-..+..+.-.-|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 3566666666666666665554443333333443333
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.56 E-value=1.7e+02 Score=22.12 Aligned_cols=60 Identities=13% Similarity=0.287 Sum_probs=33.8
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 044044 279 MKDENINPDVVTYTSVIRGFCYAN-DWNEAKRLFIEMMDQGVQPDVVTFSVIMDELCKNGKM 339 (508)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 339 (508)
+.+.|+..+. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455555443 3444555555554 5566777777776665555555555555566655543
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.23 E-value=2.1e+02 Score=21.57 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=27.5
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 133 LNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 191 (508)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (508)
+.+.|+.+... -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44455443322 33344445455555666666666655544444444444444444444
No 327
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.16 E-value=49 Score=27.69 Aligned_cols=54 Identities=13% Similarity=-0.046 Sum_probs=31.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHH-------hHHHHHHHHH--hcCCcchHHHHHHHH
Q 044044 115 GCLAKNKHYDTVLSLFKRLNSAGLFPDIY-------THSILINCFC--KMGRVSHGFVVLGRI 168 (508)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~g~~~~a~~~~~~~ 168 (508)
...++.|+.+....+++.+.+.|...+.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34456788888777887776665444422 2233443332 557777666666654
No 328
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.93 E-value=1.2e+02 Score=20.88 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=17.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc
Q 044044 122 HYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRV 158 (508)
Q Consensus 122 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 158 (508)
+.++|.++++.+.++| | ..|..++.++...|+.
T Consensus 52 ~~~~ar~Lld~L~~rG--~--~Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG--S--QALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHHTTSC--T--THHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHcC--h--HHHHHHHHHHHHcCcH
Confidence 4556666666665544 1 2345555555444443
No 329
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.83 E-value=2.7e+02 Score=22.70 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=48.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHh--cCC--------------cchHHHHHHHHHhCCCCCCHH--h-
Q 044044 121 KHYDTVLSLFKRLNSAGLFPDIYT--HSILINCFCK--MGR--------------VSHGFVVLGRILRSCFTPNAV--T- 179 (508)
Q Consensus 121 g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~--~g~--------------~~~a~~~~~~~~~~~~~~~~~--~- 179 (508)
+++.+-..+++.+...+..-.... -..+++.+.+ .|+ ++.|+.+++.+.+.-.-++.. .
T Consensus 33 ~dFrq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~~e~~l~~~l~e~i 112 (235)
T 3bu8_A 33 GDFRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLTEAVVESS 112 (235)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 345556666666665655544442 1222233332 222 557888888887643211211 1
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 044044 180 ----FTSLIKGLCAESRIMEAAALFTKHRV 205 (508)
Q Consensus 180 ----~~~l~~~~~~~g~~~~A~~~~~~~~~ 205 (508)
-...+..|.+.|.+++|.+++++...
T Consensus 113 ~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 113 RKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 12344567889999999999998775
No 330
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.50 E-value=2.4e+02 Score=22.01 Aligned_cols=128 Identities=11% Similarity=0.117 Sum_probs=54.2
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHH
Q 044044 367 GYCLTDKIDHARKLFVSMESNGCMHDVV---SYNTLINWYC-KNKDVEEALSLYSEMLSKGIKPTVVT---YNTLFLGLF 439 (508)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~ 439 (508)
..+..|+.+.-.++.+.+++.|..++.. -++.|..++. ...+.....++.+.+++.|..++... .+..+...+
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~ 123 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGG
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHH
Confidence 3344455544445555555555443321 1222222221 12334445566666777766554321 101222222
Q ss_pred hcCC-HHHHHHHHHHHHH-CCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHH-HHHcCCc
Q 044044 440 EIHQ-VERALKLFDEMRR-NHVAADTYTY--NNFIDGLCKSGFVLEALELFRA-IRDSKYE 495 (508)
Q Consensus 440 ~~g~-~~~a~~~~~~~~~-~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~-m~~~g~~ 495 (508)
..+. ...-..+++.+.+ .|..++.... .+-+....+.|+.+ +.+++.+ +.+.+++
T Consensus 124 ~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~-~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI-ALKMMEDYIKKYNLK 183 (186)
T ss_dssp GCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHH-HHHHHHHHHHHHTCC
T ss_pred HcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHH-HHHHHHHHHHHHhcc
Confidence 2232 2344556666666 5655443211 11233334556554 4444443 3344444
No 331
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.22 E-value=2.2e+02 Score=21.33 Aligned_cols=59 Identities=8% Similarity=-0.027 Sum_probs=30.4
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCCh
Q 044044 169 LRSCFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHT 228 (508)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 228 (508)
.+.|...+..- ..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 14 ~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 14 KETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34444443322 223333444445556666666666655445555555556666665543
No 332
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.20 E-value=4.2e+02 Score=24.73 Aligned_cols=137 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHhHHcCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 044044 92 CIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVSHGFVVLGRILRS 171 (508)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 171 (508)
++-..+..+..-|-....|..-...+...|++++|.++--...+ |+-.+..|.+.+-..=..-|+..-.++.|..+++.
T Consensus 346 ~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~ 424 (494)
T 1bpo_A 346 DLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQ 424 (494)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhcc
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 044044 172 CFTPNAVTFTSLIKGLCAESRIMEAAALFTKHRVFACEPDVFTYNTLINGLCRTGHTIVALNLFEEM 238 (508)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 238 (508)
| ..+..----+++.....|+.+-..+.+.+ +.-+...=+--+.+..+..-|+.+|.+.
T Consensus 425 g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e--------~KL~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 425 G-QLNKYESLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp S-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH--------TCSCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred C-ccchHHhhHHhHHHHhccHHHHHHHHHhc--------CCccccHHhHhhhhhcCHHHHHHHHHHc
No 333
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.85 E-value=1.3e+02 Score=23.62 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=5.5
Q ss_pred HhcCChHHHHHHH
Q 044044 223 CRTGHTIVALNLF 235 (508)
Q Consensus 223 ~~~g~~~~A~~~~ 235 (508)
+..|+.+-+..++
T Consensus 80 ~~~~~~~~~~~Ll 92 (201)
T 3hra_A 80 GAQGRTEILAYML 92 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445544443333
No 334
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=24.74 E-value=2e+02 Score=22.78 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----C-CHHHHH
Q 044044 397 NTLINWYCKNKDVE---EALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMRRNHVA-----A-DTYTYN 467 (508)
Q Consensus 397 ~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~-~~~~~~ 467 (508)
...+.-+.+.|+.+ +|-++.+.|... +...-..+.........+..-.+++.+|...-.+ . +..++.
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~~----d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~ 110 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQE----DQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMK 110 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhcc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHH
Confidence 34455566666543 666666666654 2222222223333334455567778888764111 1 445554
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 044044 468 NFIDGLCKSGFVLEALELFRAIRDS 492 (508)
Q Consensus 468 ~li~~~~~~g~~~~A~~~~~~m~~~ 492 (508)
-|...| +.+...+.++...
T Consensus 111 eL~~~C------k~~qp~i~~Li~e 129 (186)
T 1oxz_A 111 ELYQRC------ERMRPTLFRLASD 129 (186)
T ss_dssp HHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHHHHHHHH
Confidence 444333 4556666666643
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.49 E-value=2.3e+02 Score=21.37 Aligned_cols=35 Identities=3% Similarity=-0.061 Sum_probs=16.7
Q ss_pred CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 157 RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 191 (508)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (508)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44555555555555544444444333344444433
No 336
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.42 E-value=2.7e+02 Score=22.24 Aligned_cols=17 Identities=12% Similarity=-0.091 Sum_probs=7.9
Q ss_pred HHHhcCChhHHHHHHHH
Q 044044 332 ELCKNGKMDKASRLLEL 348 (508)
Q Consensus 332 ~~~~~~~~~~a~~~~~~ 348 (508)
...+.|+.+-+..+++.
T Consensus 216 ~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHh
Confidence 33455555544444443
No 337
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.27 E-value=2.2e+02 Score=21.00 Aligned_cols=42 Identities=10% Similarity=0.009 Sum_probs=18.7
Q ss_pred HHHHHhcC-CcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 044044 149 INCFCKMG-RVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAE 190 (508)
Q Consensus 149 ~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (508)
+..+...+ ..-.|.++++.+.+.+...+..|...-+..+...
T Consensus 24 l~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 24 LQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp HHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 33444333 4455555655555554444444433333333333
No 338
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.27 E-value=1.3e+02 Score=18.94 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 110 FNILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCK 154 (508)
Q Consensus 110 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (508)
++.++..+++..-.++++-.++++.+.| ..+...|..-.+.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4555555665555666666666666665 3445555444444443
No 339
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.10 E-value=1.5e+02 Score=20.21 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 044044 431 YNTLFLGLFEIHQVERALKLFDEM 454 (508)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~~ 454 (508)
+......+.+.|++++|++..++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344445555556666555555443
No 340
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.86 E-value=1.2e+02 Score=18.65 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=12.1
Q ss_pred cCCHHHHHHHHHHHHHcCCccC
Q 044044 476 SGFVLEALELFRAIRDSKYELN 497 (508)
Q Consensus 476 ~g~~~~A~~~~~~m~~~g~~p~ 497 (508)
.|+.+.|+..+-+|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4556666666665554444443
No 341
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.70 E-value=42 Score=28.13 Aligned_cols=54 Identities=11% Similarity=-0.030 Sum_probs=27.7
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCChhh-------HHHHHHHHH--hcCCHHHHHHHHHHH
Q 044044 261 DGLCKEGFVDKAKELFLKMKDENINPDVVT-------YTSVIRGFC--YANDWNEAKRLFIEM 314 (508)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~~ 314 (508)
...++.|+.+....+++.+.+.+...+... .+.|..+.. +.|+.+-+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344566777777777776655544444222 223333321 456666555555543
No 342
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.66 E-value=1.9e+02 Score=20.07 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 044044 412 ALSLYSEMLSKGIKPTVVTYNTLFLGLFEIHQVERALKLFDEMR-----RNHVAADTYTYNN 468 (508)
Q Consensus 412 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~ 468 (508)
|.++.+++...|+.|+..+...++..|...+- .+.++.++.. ..|..|+....+.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 45566666666777777777777777665553 1333322222 3356666555543
No 343
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.27 E-value=2.2e+02 Score=20.83 Aligned_cols=40 Identities=5% Similarity=0.014 Sum_probs=16.4
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 044044 150 NCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCA 189 (508)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (508)
..+...+..-.|.++++.+.+.+...+..|....+..+..
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e 57 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMAS 57 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 3333334444455555554444333333333333333333
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.89 E-value=1.6e+02 Score=21.49 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=34.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 044044 112 ILFGCLAKNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMGRVS 159 (508)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 159 (508)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+.+.|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 455555556667778899999988766667777777777777777543
No 345
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.70 E-value=3.5e+02 Score=22.80 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=7.5
Q ss_pred HHhcCChhHHHHHHH
Q 044044 117 LAKNKHYDTVLSLFK 131 (508)
Q Consensus 117 ~~~~g~~~~A~~~~~ 131 (508)
.+..|+.+-+..+++
T Consensus 38 A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 38 AIADNNVRLVCTLLN 52 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 345666654444433
No 346
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.19 E-value=1.5e+02 Score=22.02 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=17.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 119 KNKHYDTVLSLFKRLNSAGLFPDIYTHSILINCFCKMG 156 (508)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 156 (508)
..+..-.|.++++.+.+.+...+..|.-..++.+.+.|
T Consensus 25 ~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 25 EVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp TCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33334445555555554443344444444444444444
No 347
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=20.49 E-value=3.5e+02 Score=22.06 Aligned_cols=50 Identities=8% Similarity=0.109 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCC
Q 044044 374 IDHARKLFVSMESNGCMHDVVSYNTLINWYCK-NKDVEEALSLYSEMLSKGIK 425 (508)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~ 425 (508)
.+.+..+++.+.+.|...|...-...+..... .|. ....+-.++.++|+.
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~--G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK--GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc--cHHHHHHHHHHcCCC
Confidence 34555666666666655555444445554443 222 234455666677765
No 348
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=20.35 E-value=3.2e+02 Score=21.53 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=6.9
Q ss_pred CHhhHHHHHHHHHhcCC
Q 044044 211 DVFTYNTLINGLCRTGH 227 (508)
Q Consensus 211 ~~~~~~~l~~~~~~~g~ 227 (508)
+..+-...+.++.+.|+
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333344444444443
No 349
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.30 E-value=2e+02 Score=21.34 Aligned_cols=44 Identities=5% Similarity=-0.016 Sum_probs=21.3
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 044044 148 LINCFCKMGRVSHGFVVLGRILRSCFTPNAVTFTSLIKGLCAES 191 (508)
Q Consensus 148 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (508)
++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444445556666666655544444444433444444433
No 350
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.06 E-value=4.9e+02 Score=23.54 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=28.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044044 365 IDGYCLTDKIDHARKLFVSMESNG----------------CMHDVVSYNTLINWYCKNKDVEEALSLYSEML 420 (508)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (508)
+.......+.+++.+.++.+...- ...-......+...|...|+.++|..++++..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555566666666666653320 01112233444455555666666666665554
Done!