BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044045
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/196 (48%), Positives = 128/196 (65%), Gaps = 4/196 (2%)
Query: 22 EPSPLQDFCVADPSGSA-RVNGFACMDPKLAQANHFTFSG-LHVAGNTSNPLGSRVTPVT 79
+P PLQDFCVAD G A VNG C P + F FS L AGNTS P GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTC-KPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 80 VAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTS-NPENRLIT 138
VA+ PG NTLG S+AR+D+AP G PPH+HPRATEI V++G L VG + S + N+L +
Sbjct: 61 VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 139 KVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPSIADDLLA 198
+V++ G+ FV P GL HFQ NVG A+ + + +SQNPG++ + +FGS+P I +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 199 KAFQLDKSVVGQLQTK 214
KA +++ VV L++K
Sbjct: 181 KALRVEAGVVELLKSK 196
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/196 (47%), Positives = 127/196 (64%), Gaps = 4/196 (2%)
Query: 22 EPSPLQDFCVADPSGSA-RVNGFACMDPKLAQANHFTFSG-LHVAGNTSNPLGSRVTPVT 79
+P PLQDFCVAD G A VNG C P + F FS L AGNTS P GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTC-KPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 80 VAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTS-NPENRLIT 138
VA+ PG NTLG S+ R+D+AP G PPH+HPRATEI V++G L VG + S + N+L +
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 139 KVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPSIADDLLA 198
+V++ G+ FV P GL HFQ NVG A+ + + +SQNPG++ + +FGS+P I +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 199 KAFQLDKSVVGQLQTK 214
KA +++ VV L++K
Sbjct: 181 KALRVEAGVVELLKSK 196
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/196 (47%), Positives = 127/196 (64%), Gaps = 4/196 (2%)
Query: 22 EPSPLQDFCVADPSGSA-RVNGFACMDPKLAQANHFTFSG-LHVAGNTSNPLGSRVTPVT 79
+P PLQDFCVAD G A VNG C P + F FS L AGNTS P GS VT +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTC-KPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 80 VAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTS-NPENRLIT 138
VA+ PG NTLG S+ R+D+AP G PPH+HPRATEI V++G L VG + S + N+L +
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 139 KVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPSIADDLLA 198
+V++ G+ FV P GL HFQ NVG A+ + + +SQNPG++ + +FGS+P I +L
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 199 KAFQLDKSVVGQLQTK 214
KA +++ VV L++K
Sbjct: 181 KALRVEAGVVELLKSK 196
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 65 GNTSNPLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHV 108
GN L SR+T +A+ P L + A +D+ PW IPPHV
Sbjct: 30 GNVEAALVSRITAEELAKXPRLKFIQVVTAGLDHLPWESIPPHV 73
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 30/151 (19%)
Query: 72 GSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSN 131
G+ + + + PG + +L ++ P + H HP A E V++G +D+ S
Sbjct: 217 GNELRLASAKEFPGSFNMTGALIHLE--PGAMRQLHWHPNADEWQYVLDGEMDLTVFAS- 273
Query: 132 PENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVITIA--------- 182
E + L++GDV P G H RN SSQ P I +
Sbjct: 274 -EGKASVSRLQQGDVGYVPKGYGHAIRN------------SSQKPLDIVVVFNDGDYQSI 320
Query: 183 --NAVFGSNPSIADDLLAKAFQLDKSVVGQL 211
+ SNPS +L FQ+ + +L
Sbjct: 321 DLSTWLASNPS---SVLGNTFQISPELTKKL 348
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 107 HVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVG 161
H H A E V+EG + ++PE ++ + KG ++ FP G H +G
Sbjct: 68 HWHANAAEWAYVMEGRTRI--TLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIG 120
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 6/146 (4%)
Query: 69 NPLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFV 128
NP R++ + +P L G S + G+ PH + A ++ V G V V
Sbjct: 345 NPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV 404
Query: 129 TSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVITIANAVFGS 188
N + L++G + V P ++ G + + + + V + VF +
Sbjct: 405 NXQ-GNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVV--FKTHHNAVSSYIKDVFRA 461
Query: 189 NPSIADDLLAKAFQLDKSVVGQLQTK 214
PS ++L+ ++ L +S V QL+ +
Sbjct: 462 IPS---EVLSNSYNLGQSQVRQLKYQ 484
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 6/146 (4%)
Query: 69 NPLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFV 128
NP R++ + +P L G S + G+ PH + A ++ V G V V
Sbjct: 344 NPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV 403
Query: 129 TSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVITIANAVFGS 188
N + L++G + V P ++ G + + + + V + VF +
Sbjct: 404 NCQ-GNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVV--FKTHHNAVSSYIKDVFRA 460
Query: 189 NPSIADDLLAKAFQLDKSVVGQLQTK 214
PS ++L+ ++ L +S V QL+ +
Sbjct: 461 IPS---EVLSNSYNLGQSQVRQLKYQ 483
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 26/174 (14%)
Query: 52 QANHFTFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHV 108
+ +H T S + + +T N L G VTV ++P L + R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 96
Query: 109 HPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168
H A E +I GS V V + + R + +GD++ FP GL H SI
Sbjct: 97 HKEA-EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPH-----------SI 142
Query: 169 SALSSQNPGVITIANAVFGSNPSIAD-------DLLAKAFQLDKSVVGQLQTKS 215
AL ++ + F S + D +++A F + K + L K
Sbjct: 143 QALEEGAEFLLVFDDGSFSSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKE 196
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 52 QANHFTFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHV 108
+ +H T S + + +T N L G VTV ++P L + R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIAELHW 96
Query: 109 HPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAF 166
H A E +I GS V V + + R + +GD++ FP GL H + + G F
Sbjct: 97 HKEA-EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 52 QANHFTFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHV 108
+ +H T S + + +T N L G VTV ++P L + R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 96
Query: 109 HPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAF 166
H A E +I GS V V + + R + +GD++ FP GL H + + G F
Sbjct: 97 HKEA-EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 52 QANHFTFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHV 108
+ +H T S + + +T N L G VTV ++P L + R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 96
Query: 109 HPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAF 166
H A E +I GS V V + + R + +GD++ FP GL H + + G F
Sbjct: 97 HKEA-EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 52 QANHFTFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHV 108
+ +H T S + + +T N L G VTV ++P L + R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 96
Query: 109 HPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAF 166
H A E +I GS V V + + R + +GD++ FP GL H + + G F
Sbjct: 97 HKEA-EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 52 QANHFTFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHV 108
+ +H T S + + +T N L G VTV ++P L + R+ P + H
Sbjct: 39 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 96
Query: 109 HPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAF 166
H A E +I GS V V + + R + +GD++ FP GL H + + G F
Sbjct: 97 HKEA-EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 52 QANHFTFSGLHVA-GNTSNPL--GSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHV 108
+ +H T S + + +T N L G VTV ++P L + R+ P + H
Sbjct: 34 ETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRL--KPGAIRELHW 91
Query: 109 HPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAF 166
H A E +I GS V V + + R + +GD++ FP GL H + + G F
Sbjct: 92 HKEA-EWAYMIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 146
>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
Length = 418
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 68 SNPLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGF 127
SN LG ++ +T + P L L L+ +D + PH + +A +L + EG ++
Sbjct: 229 SNKLG-KLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIEL 287
Query: 128 V-----------TSNP-ENRLITKVLKKGDVFVFPIG 152
V P E R L + D+FV P G
Sbjct: 288 VGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAG 324
>pdb|3SMH|A Chain A, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|B Chain B, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|C Chain C, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|D Chain D, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|E Chain E, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|F Chain F, Crystal Structure Of Major Peanut Allergen Ara H 1
Length = 418
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 23/90 (25%)
Query: 84 PGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVT-------------- 129
P L L L ++ ++ PH + +A I+ V +G+ ++ V
Sbjct: 255 PQLQDLDMMLTXVEIKEGALVLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEE 314
Query: 130 ---------SNPENRLITKVLKKGDVFVFP 150
SN E R T LK+GDVF+ P
Sbjct: 315 EDEDEEEEGSNREVRRYTARLKEGDVFIMP 344
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 83 IPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLK 142
I N L +++ G H H E+ V EG+L + F N IT L+
Sbjct: 25 IAEXNDYQFKLVKVE----GEFVWHEHADTDEVFIVXEGTLQIAFRDQN-----IT--LQ 73
Query: 143 KGDVFVFPIGLAH 155
G+ +V P G+ H
Sbjct: 74 AGEXYVIPKGVEH 86
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 56 FTFSGLHVAGNTSNPL--GSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRAT 113
F+FS H N L G VTV ++P L + R+ P + H H A
Sbjct: 50 FSFSDTH------NRLEKGGYAREVTVRELPISENLASVNXRL--KPGAIRELHWHKEA- 100
Query: 114 EILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAF 166
E I GS V V + + R + +GD++ FP GL H + + G F
Sbjct: 101 EWAYXIYGSARVTIV--DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEF 151
>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed
Storage Protein Of Mungbean
Length = 424
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 68 SNPLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGF 127
SN LG R +T + P L L + +D ++ PH + +A IL + EG ++
Sbjct: 239 SNKLG-RWFEITPEKNPQLRDLDMFIRSVDMKEGSLLLPHYNSKAIVILVINEGKANIEL 297
Query: 128 V 128
V
Sbjct: 298 V 298
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 87 NTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFV-----TSNPENRLITKVL 141
N+L ++ I+ + PH + +A IL V EG V V E L
Sbjct: 235 NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAEL 294
Query: 142 KKGDVFVFP 150
K DVFV P
Sbjct: 295 SKDDVFVIP 303
>pdb|3S7E|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7E|B Chain B, Crystal Structure Of Ara H 1
pdb|3S7I|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7I|B Chain B, Crystal Structure Of Ara H 1
Length = 418
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 23/90 (25%)
Query: 84 PGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVT-------------- 129
P L L L ++ ++ PH + +A I+ V +G+ ++ V
Sbjct: 256 PQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEE 315
Query: 130 ---------SNPENRLITKVLKKGDVFVFP 150
SN E R T LK+GDVF+ P
Sbjct: 316 EDEDEEEEGSNREVRRYTARLKEGDVFIMP 345
>pdb|4HD1|A Chain A, Crystal Structure Of Squalene Synthase Hpnc From
Alicyclobacillus Acidocaldarius
Length = 294
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 26 LQDFCV--ADPSGSARVNGFACMDPKLAQANHFTFSGLHVAGNTSN 69
L+D+C ADP G + F C+D + A+ + T + L VA + +
Sbjct: 128 LRDYCRYSADPVGRLVLGIFGCLDDERARLSDATCTALQVANHXQD 173
>pdb|1MI2|A Chain A, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|1MI2|B Chain B, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|3N52|A Chain A, Crystal Structure Analysis Of Mip2
pdb|3N52|B Chain B, Crystal Structure Analysis Of Mip2
pdb|3N52|C Chain C, Crystal Structure Analysis Of Mip2
pdb|3N52|D Chain D, Crystal Structure Analysis Of Mip2
Length = 73
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 92 SLARIDYA---PWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKK 143
+L R+D+ V PP H TE++ ++G V +PE L+ K+++K
Sbjct: 14 TLPRVDFKNIQSLSVTPPGPHCAQTEVIATLKGGQKVCL---DPEAPLVQKIIQK 65
>pdb|3H8U|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
With Double- Stranded Beta-Helix Domain (Yp_001338853.1)
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
At 1.80 A Resolution
pdb|3H8U|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
With Double- Stranded Beta-Helix Domain (Yp_001338853.1)
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
At 1.80 A Resolution
Length = 125
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 104 IPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVG 161
I HVHP + TVI G + + N ++T LK GD+ + G H N G
Sbjct: 52 IASHVHPHGQDTWTVISGEAEY-----HQGNGIVTH-LKAGDIAIAKPGQVHGAXNSG 103
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 67 TSNPLGS----RVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGS 122
+ NP+ S + +T + P L L L+ +D ++ PH + +A IL + EG
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 123 LDVGFV 128
++ V
Sbjct: 281 ANIELV 286
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 67 TSNPLGS----RVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGS 122
+ NP+ S + +T + P L L L+ +D ++ PH + +A IL + EG
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 123 LDVGFV 128
++ V
Sbjct: 281 ANIELV 286
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 68 SNPLGS--RVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDV 125
SN G +TP +Q+ L+ L L + + PH + RAT IL EG +V
Sbjct: 259 SNNYGKLYEITPEKNSQLRDLDIL---LNCLQMNEGALFVPHYNSRATVILVANEGRAEV 315
Query: 126 GFV---------TSNPENRLITKVLKKGDVFVFP 150
V + + R L +GD+ V P
Sbjct: 316 ELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIP 349
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 67 TSNPLGS----RVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGS 122
+ NP+ S + +T + P L L L+ +D ++ PH + +A IL + EG
Sbjct: 221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGD 280
Query: 123 LDVGFV 128
++ V
Sbjct: 281 ANIELV 286
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 75 VTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFV------ 128
+TP +Q+ L+ L L + + PH + RAT IL EG +V V
Sbjct: 28 ITPEKNSQLRDLDIL---LNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQ 84
Query: 129 ---TSNPENRLITKVLKKGDVFVFP 150
+ + R L +GD+ V P
Sbjct: 85 QQGLESMQLRRYAATLSEGDIIVIP 109
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 141 LKKGDVFVFPIGLAHFQRNVG 161
L++GD+F P G++H+ N G
Sbjct: 134 LREGDIFAMPAGVSHWAYNNG 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,147,825
Number of Sequences: 62578
Number of extensions: 236239
Number of successful extensions: 725
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 46
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)