Query 044045
Match_columns 215
No_of_seqs 320 out of 1819
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 7.3E-27 1.6E-31 209.9 19.4 162 43-214 201-362 (367)
2 PLN00212 glutelin; Provisional 99.9 1.5E-23 3.2E-28 193.4 17.7 145 65-214 322-468 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 1.2E-22 2.5E-27 182.8 18.1 135 70-214 48-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 1.2E-22 2.7E-27 160.1 11.8 128 69-209 11-144 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 2.4E-20 5.1E-25 147.4 17.6 136 69-209 8-146 (146)
6 PLN00212 glutelin; Provisional 99.8 3.6E-19 7.8E-24 164.4 16.1 140 70-214 60-249 (493)
7 COG2140 Thermophilic glucose-6 99.8 5.1E-18 1.1E-22 140.0 12.9 146 52-211 49-196 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 5.4E-14 1.2E-18 96.8 8.1 70 95-171 2-71 (71)
9 COG3837 Uncharacterized conser 99.4 1.1E-12 2.4E-17 103.6 10.3 94 81-183 34-130 (161)
10 PRK13290 ectC L-ectoine syntha 99.4 2.3E-12 5.1E-17 99.6 12.0 82 89-179 33-115 (125)
11 COG1917 Uncharacterized conser 99.4 2E-12 4.3E-17 100.1 11.3 86 81-173 33-118 (131)
12 COG0662 {ManC} Mannose-6-phosp 99.4 3.6E-12 7.9E-17 98.6 12.2 82 89-177 34-115 (127)
13 PRK04190 glucose-6-phosphate i 99.3 3E-11 6.4E-16 99.8 13.6 88 85-174 62-157 (191)
14 PRK11171 hypothetical protein; 99.3 9.4E-11 2E-15 101.5 15.0 109 47-172 27-136 (266)
15 PRK09943 DNA-binding transcrip 99.3 6.9E-11 1.5E-15 96.8 12.0 76 89-172 105-181 (185)
16 TIGR01479 GMP_PMI mannose-1-ph 99.2 9.3E-11 2E-15 108.9 12.6 78 90-174 375-452 (468)
17 PRK15460 cpsB mannose-1-phosph 99.2 1.1E-10 2.4E-15 108.6 12.3 78 89-173 383-460 (478)
18 COG4101 Predicted mannose-6-ph 99.2 1.6E-10 3.6E-15 87.3 9.5 83 90-177 45-128 (142)
19 TIGR03214 ura-cupin putative a 99.1 8.1E-10 1.7E-14 95.4 12.7 77 89-172 56-133 (260)
20 PF01050 MannoseP_isomer: Mann 99.1 7.5E-10 1.6E-14 88.3 10.9 77 89-172 61-137 (151)
21 PRK11171 hypothetical protein; 99.1 1.9E-09 4.1E-14 93.4 12.5 74 90-171 183-257 (266)
22 TIGR03214 ura-cupin putative a 99.1 1.5E-09 3.3E-14 93.7 11.0 73 90-170 178-251 (260)
23 PF02041 Auxin_BP: Auxin bindi 99.0 1.1E-08 2.4E-13 80.4 11.5 95 90-185 43-140 (167)
24 TIGR03037 anthran_nbaC 3-hydro 98.8 6.8E-08 1.5E-12 77.3 9.6 61 99-163 36-96 (159)
25 PRK13264 3-hydroxyanthranilate 98.7 6.3E-08 1.4E-12 78.7 9.2 58 99-160 42-99 (177)
26 PF06560 GPI: Glucose-6-phosph 98.7 3.9E-07 8.4E-12 74.7 11.9 85 87-173 46-146 (182)
27 PF11699 CENP-C_C: Mif2/CENP-C 98.6 5.1E-07 1.1E-11 65.2 9.3 72 90-169 11-83 (85)
28 PF12973 Cupin_7: ChrR Cupin-l 98.5 2E-07 4.3E-12 67.8 5.7 81 71-169 8-88 (91)
29 PF02311 AraC_binding: AraC-li 98.5 4.9E-07 1.1E-11 68.1 7.8 64 100-171 12-75 (136)
30 TIGR02451 anti_sig_ChrR anti-s 98.5 5.1E-07 1.1E-11 76.0 7.8 72 91-174 127-198 (215)
31 PRK15457 ethanolamine utilizat 98.5 2.5E-06 5.4E-11 71.9 11.6 70 90-171 156-225 (233)
32 PF03079 ARD: ARD/ARD' family; 98.4 4.1E-06 8.9E-11 67.2 10.4 71 104-178 85-155 (157)
33 PRK10371 DNA-binding transcrip 98.4 1.8E-06 3.9E-11 75.9 9.1 58 97-162 32-89 (302)
34 COG1791 Uncharacterized conser 98.2 1.4E-05 3E-10 64.3 9.8 72 105-180 89-160 (181)
35 COG4297 Uncharacterized protei 98.2 4.3E-06 9.3E-11 65.0 5.6 67 100-171 51-118 (163)
36 PRK10296 DNA-binding transcrip 98.1 2.2E-05 4.7E-10 67.6 10.3 52 101-160 33-84 (278)
37 PF06339 Ectoine_synth: Ectoin 98.1 4.3E-05 9.3E-10 58.7 10.5 85 86-178 30-114 (126)
38 TIGR02272 gentisate_1_2 gentis 98.1 1.1E-05 2.4E-10 72.1 7.7 75 91-172 81-155 (335)
39 PRK13501 transcriptional activ 98.1 1.6E-05 3.4E-10 69.1 8.5 62 91-162 20-81 (290)
40 PRK13500 transcriptional activ 98.1 2.3E-05 5E-10 69.1 9.2 55 100-162 57-111 (312)
41 COG3257 GlxB Uncharacterized p 98.0 5.2E-05 1.1E-09 63.4 9.8 76 91-173 61-137 (264)
42 TIGR02297 HpaA 4-hydroxyphenyl 98.0 2.1E-05 4.5E-10 67.8 7.7 60 101-167 33-92 (287)
43 PF05523 FdtA: WxcM-like, C-te 97.9 6.3E-05 1.4E-09 58.5 8.6 95 72-174 15-112 (131)
44 PRK13502 transcriptional activ 97.9 5.8E-05 1.3E-09 65.0 8.9 56 99-162 26-81 (282)
45 PF14499 DUF4437: Domain of un 97.9 2.2E-05 4.8E-10 67.4 5.7 73 89-168 34-106 (251)
46 PF06052 3-HAO: 3-hydroxyanthr 97.9 0.00017 3.8E-09 57.0 10.1 64 96-163 38-101 (151)
47 COG3435 Gentisate 1,2-dioxygen 97.9 3.3E-05 7.1E-10 67.4 6.5 95 70-172 67-166 (351)
48 PF05899 Cupin_3: Protein of u 97.9 3.4E-05 7.5E-10 54.1 5.5 59 91-158 7-65 (74)
49 PRK13503 transcriptional activ 97.8 5.1E-05 1.1E-09 65.0 6.2 54 100-161 24-77 (278)
50 TIGR02272 gentisate_1_2 gentis 97.7 0.00016 3.4E-09 64.7 8.2 86 72-169 232-318 (335)
51 PF06249 EutQ: Ethanolamine ut 97.6 0.00015 3.2E-09 57.8 5.9 68 91-170 77-144 (152)
52 KOG2107 Uncharacterized conser 97.5 0.00029 6.2E-09 56.5 6.2 57 104-163 86-142 (179)
53 PF05995 CDO_I: Cysteine dioxy 97.2 0.012 2.5E-07 48.0 12.8 86 90-175 74-166 (175)
54 COG1898 RfbC dTDP-4-dehydrorha 97.2 0.003 6.6E-08 51.4 9.1 69 100-168 54-129 (173)
55 COG4766 EutQ Ethanolamine util 97.2 0.0044 9.4E-08 49.2 9.5 68 90-169 99-166 (176)
56 COG3450 Predicted enzyme of th 97.1 0.0054 1.2E-07 46.8 9.2 62 90-160 44-105 (116)
57 TIGR01221 rmlC dTDP-4-dehydror 96.9 0.019 4E-07 47.0 11.5 69 99-168 52-128 (176)
58 PF00908 dTDP_sugar_isom: dTDP 96.8 0.02 4.4E-07 46.8 10.3 80 99-178 51-139 (176)
59 COG3435 Gentisate 1,2-dioxygen 96.7 0.0061 1.3E-07 53.5 7.2 64 98-170 268-331 (351)
60 PF04209 HgmA: homogentisate 1 96.3 0.025 5.4E-07 52.1 9.2 53 108-169 142-194 (424)
61 COG3257 GlxB Uncharacterized p 96.1 0.037 8.1E-07 46.6 8.3 86 72-169 167-253 (264)
62 PF13621 Cupin_8: Cupin-like d 95.9 0.05 1.1E-06 45.3 8.6 69 94-163 133-235 (251)
63 PRK05341 homogentisate 1,2-dio 95.8 0.089 1.9E-06 48.6 10.1 56 106-169 148-203 (438)
64 PF02678 Pirin: Pirin; InterP 95.8 0.048 1.1E-06 41.0 7.1 62 101-168 39-103 (107)
65 PF12852 Cupin_6: Cupin 95.8 0.024 5.1E-07 46.0 5.8 45 112-161 35-79 (186)
66 TIGR01015 hmgA homogentisate 1 95.8 0.094 2E-06 48.3 10.1 54 106-168 142-195 (429)
67 PRK10572 DNA-binding transcrip 95.8 0.043 9.3E-07 47.4 7.7 49 106-162 44-92 (290)
68 PF07385 DUF1498: Protein of u 95.7 0.08 1.7E-06 44.7 8.6 75 96-172 92-187 (225)
69 PLN02658 homogentisate 1,2-dio 95.5 0.14 3.1E-06 47.2 10.1 54 107-168 142-195 (435)
70 PF14499 DUF4437: Domain of un 95.4 0.01 2.2E-07 51.2 2.2 73 93-172 173-245 (251)
71 TIGR02466 conserved hypothetic 95.4 0.07 1.5E-06 44.5 7.2 80 93-172 98-197 (201)
72 KOG3995 3-hydroxyanthranilate 95.3 0.026 5.6E-07 47.3 4.4 59 99-161 41-99 (279)
73 PF13759 2OG-FeII_Oxy_5: Putat 95.2 0.075 1.6E-06 39.0 6.3 76 96-171 5-100 (101)
74 PF08007 Cupin_4: Cupin superf 95.2 0.27 5.8E-06 43.7 10.7 67 94-161 116-200 (319)
75 COG3806 ChrR Transcriptional a 95.1 0.11 2.4E-06 43.1 7.5 89 68-173 110-198 (216)
76 COG3822 ABC-type sugar transpo 94.9 0.14 3.1E-06 42.3 7.5 78 95-174 90-188 (225)
77 PRK00924 5-keto-4-deoxyuronate 94.8 0.19 4.1E-06 43.9 8.6 82 90-175 174-261 (276)
78 PRK09685 DNA-binding transcrip 94.8 0.26 5.6E-06 42.6 9.4 67 90-163 44-115 (302)
79 COG1741 Pirin-related protein 94.5 0.14 3.1E-06 44.7 7.1 68 95-168 48-119 (276)
80 PRK12335 tellurite resistance 94.4 0.23 5.1E-06 43.2 8.2 63 99-162 19-83 (287)
81 COG3508 HmgA Homogentisate 1,2 94.3 0.64 1.4E-05 42.0 10.7 71 90-168 124-194 (427)
82 PF02373 JmjC: JmjC domain, hy 94.0 0.12 2.5E-06 38.1 4.8 29 135-163 79-107 (114)
83 PF05118 Asp_Arg_Hydrox: Aspar 93.9 0.36 7.9E-06 38.7 7.9 70 92-168 81-155 (163)
84 PF05726 Pirin_C: Pirin C-term 93.8 0.3 6.6E-06 36.1 6.7 68 94-171 2-69 (104)
85 PF06865 DUF1255: Protein of u 93.6 0.98 2.1E-05 33.2 8.8 66 95-170 27-92 (94)
86 COG5553 Predicted metal-depend 93.4 0.39 8.4E-06 38.8 7.0 77 91-171 73-155 (191)
87 PF11142 DUF2917: Protein of u 93.3 0.36 7.9E-06 32.7 5.9 57 96-159 2-58 (63)
88 PF07847 DUF1637: Protein of u 93.0 0.54 1.2E-05 39.2 7.7 86 87-173 40-143 (200)
89 PF09313 DUF1971: Domain of un 92.9 1.4 3E-05 31.5 8.6 64 100-163 12-76 (82)
90 PF14525 AraC_binding_2: AraC- 92.8 1.7 3.6E-05 33.7 10.0 67 91-164 34-100 (172)
91 KOG3706 Uncharacterized conser 92.3 0.094 2E-06 48.9 2.4 62 99-161 325-405 (629)
92 PRK15131 mannose-6-phosphate i 92.2 0.94 2E-05 41.5 8.8 59 90-158 320-378 (389)
93 PRK10579 hypothetical protein; 91.8 2.7 5.8E-05 30.9 9.1 63 97-169 29-91 (94)
94 PLN02288 mannose-6-phosphate i 91.5 0.66 1.4E-05 42.6 7.0 58 90-153 333-390 (394)
95 TIGR00218 manA mannose-6-phosp 91.3 1.5 3.3E-05 38.5 8.9 60 89-158 233-292 (302)
96 KOG2757 Mannose-6-phosphate is 90.9 1.3 2.8E-05 40.2 8.0 71 90-168 332-402 (411)
97 PRK09391 fixK transcriptional 89.8 3.4 7.4E-05 34.4 9.5 77 90-168 35-111 (230)
98 PRK11753 DNA-binding transcrip 89.5 3.7 8E-05 33.2 9.2 54 94-149 21-74 (211)
99 PF04962 KduI: KduI/IolB famil 88.6 7.4 0.00016 33.7 10.8 98 73-175 135-247 (261)
100 PF00027 cNMP_binding: Cyclic 86.6 2.3 5E-05 28.9 5.4 48 97-147 3-51 (91)
101 PF04622 ERG2_Sigma1R: ERG2 an 85.1 2.1 4.6E-05 36.1 5.3 88 109-207 117-206 (216)
102 COG2850 Uncharacterized conser 84.8 1.3 2.8E-05 40.1 4.2 63 98-161 126-203 (383)
103 COG1482 ManA Phosphomannose is 83.7 9.6 0.00021 34.0 9.1 58 90-157 241-298 (312)
104 PRK13918 CRP/FNR family transc 82.6 5.8 0.00012 31.9 6.9 55 95-150 8-63 (202)
105 PRK00924 5-keto-4-deoxyuronate 82.2 12 0.00025 32.9 8.9 54 109-169 70-126 (276)
106 smart00100 cNMP Cyclic nucleot 81.1 8.7 0.00019 26.8 6.7 55 94-150 18-72 (120)
107 cd00038 CAP_ED effector domain 80.8 7.2 0.00016 27.1 6.2 54 94-149 18-71 (115)
108 PF04962 KduI: KduI/IolB famil 78.0 18 0.00039 31.3 8.7 68 91-168 27-103 (261)
109 PRK10402 DNA-binding transcrip 76.3 10 0.00022 31.4 6.6 53 96-150 34-86 (226)
110 COG3123 Uncharacterized protei 76.3 10 0.00022 27.3 5.5 43 111-158 40-82 (94)
111 COG1482 ManA Phosphomannose is 73.9 2.9 6.2E-05 37.3 2.7 22 137-158 158-179 (312)
112 PHA02984 hypothetical protein; 73.6 24 0.00053 30.8 8.2 50 115-168 96-145 (286)
113 PRK03606 ureidoglycolate hydro 72.8 29 0.00062 28.0 8.0 65 105-169 72-139 (162)
114 KOG1417 Homogentisate 1,2-diox 72.8 39 0.00085 30.1 9.4 62 105-173 148-209 (446)
115 PRK15131 mannose-6-phosphate i 72.6 3.9 8.4E-05 37.5 3.4 24 136-159 236-259 (389)
116 PLN02868 acyl-CoA thioesterase 72.4 14 0.00031 33.7 7.1 53 94-149 32-84 (413)
117 PRK15186 AraC family transcrip 72.0 15 0.00032 32.3 6.8 46 113-164 39-84 (291)
118 TIGR00218 manA mannose-6-phosp 72.0 2.1 4.5E-05 37.7 1.4 20 138-157 152-171 (302)
119 PHA00672 hypothetical protein 71.3 34 0.00074 26.6 7.7 71 89-168 45-115 (152)
120 PHA02890 hypothetical protein; 71.3 40 0.00086 29.3 8.9 44 113-159 91-136 (278)
121 PF04115 Ureidogly_hydro: Urei 67.7 40 0.00086 27.0 7.9 82 90-171 56-144 (165)
122 KOG2130 Phosphatidylserine-spe 66.3 11 0.00024 33.8 4.7 47 134-180 260-306 (407)
123 PRK11161 fumarate/nitrate redu 65.1 57 0.0012 26.8 8.7 51 97-149 41-91 (235)
124 COG0664 Crp cAMP-binding prote 64.2 28 0.00061 27.4 6.5 56 94-151 24-79 (214)
125 PRK10202 ebgC cryptic beta-D-g 63.9 51 0.0011 25.9 7.8 54 105-158 58-127 (149)
126 PF13640 2OG-FeII_Oxy_3: 2OG-F 63.1 22 0.00047 25.2 5.1 65 96-160 4-86 (100)
127 PF07172 GRP: Glycine rich pro 62.4 7.2 0.00016 28.6 2.4 14 1-14 1-14 (95)
128 COG1741 Pirin-related protein 59.9 1.2E+02 0.0026 26.5 12.0 101 82-201 165-267 (276)
129 PF06172 Cupin_5: Cupin superf 58.9 85 0.0019 24.5 11.2 76 92-170 42-124 (139)
130 TIGR03697 NtcA_cyano global ni 58.3 25 0.00055 27.7 5.2 36 112-148 11-46 (193)
131 COG2731 EbgC Beta-galactosidas 57.9 63 0.0014 25.8 7.3 72 91-162 46-137 (154)
132 TIGR00022 uncharacterized prot 57.2 82 0.0018 24.4 7.8 25 104-128 61-85 (142)
133 COG3718 IolB Uncharacterized e 57.0 1.1E+02 0.0024 26.4 8.8 85 74-163 15-103 (270)
134 COG3717 KduI 5-keto 4-deoxyuro 55.5 64 0.0014 27.8 7.2 84 90-177 176-265 (278)
135 PF04074 DUF386: Domain of unk 55.1 1E+02 0.0022 24.1 8.5 69 90-158 45-134 (153)
136 PRK09392 ftrB transcriptional 54.4 62 0.0013 26.6 7.2 51 95-148 32-82 (236)
137 PRK14585 pgaD putative PGA bio 53.9 16 0.00035 28.6 3.2 25 190-214 88-112 (137)
138 KOG4281 Uncharacterized conser 53.7 6.4 0.00014 33.2 1.0 83 89-173 73-174 (236)
139 PF13464 DUF4115: Domain of un 53.6 70 0.0015 21.9 7.4 49 118-168 4-52 (77)
140 PLN02288 mannose-6-phosphate i 53.2 10 0.00022 34.9 2.4 22 138-159 252-273 (394)
141 PRK14584 hmsS hemin storage sy 50.3 19 0.00041 28.8 3.1 25 190-214 97-121 (153)
142 KOG3416 Predicted nucleic acid 50.1 54 0.0012 25.5 5.4 66 83-159 11-80 (134)
143 PRK13395 ureidoglycolate hydro 48.7 1.2E+02 0.0026 24.6 7.7 67 105-171 72-142 (171)
144 PF06719 AraC_N: AraC-type tra 47.0 95 0.0021 24.3 6.8 50 113-169 24-76 (155)
145 PF13994 PgaD: PgaD-like prote 46.4 24 0.00052 27.4 3.2 24 191-214 100-123 (138)
146 KOG2131 Uncharacterized conser 45.5 12 0.00026 34.1 1.5 62 100-163 207-294 (427)
147 KOG0498 K+-channel ERG and rel 39.4 51 0.0011 32.9 4.9 47 98-147 447-493 (727)
148 PLN03192 Voltage-dependent pot 38.9 70 0.0015 32.1 5.9 52 93-147 397-448 (823)
149 KOG1356 Putative transcription 38.2 12 0.00025 37.6 0.3 58 98-162 762-824 (889)
150 PRK05467 Fe(II)-dependent oxyg 37.4 1E+02 0.0022 26.2 5.8 26 137-162 141-166 (226)
151 PF10913 DUF2706: Protein of u 35.7 66 0.0014 21.0 3.4 44 3-46 4-49 (60)
152 KOG0501 K+-channel KCNQ [Inorg 32.5 74 0.0016 31.2 4.6 50 91-147 569-618 (971)
153 PF05962 HutD: HutD; InterPro 32.0 65 0.0014 26.2 3.7 33 112-151 135-167 (184)
154 PF14801 GCD14_N: tRNA methylt 30.1 1.2E+02 0.0025 20.0 3.9 31 124-156 11-41 (54)
155 PF01238 PMI_typeI: Phosphoman 29.3 45 0.00099 30.3 2.6 22 138-159 251-272 (373)
156 PF05721 PhyH: Phytanoyl-CoA d 28.7 96 0.0021 24.1 4.2 29 135-163 178-207 (211)
157 PRK02290 3-dehydroquinate synt 27.7 1.8E+02 0.0038 26.5 5.9 83 71-159 251-336 (344)
158 PF01987 AIM24: Mitochondrial 24.1 1.6E+02 0.0035 24.0 4.9 43 114-159 131-173 (215)
159 PF13348 Y_phosphatase3C: Tyro 23.9 49 0.0011 21.9 1.4 22 193-214 45-66 (68)
160 KOG1633 F-box protein JEMMA an 23.8 90 0.002 31.4 3.7 76 96-174 141-233 (776)
161 PF01959 DHQS: 3-dehydroquinat 23.4 2.3E+02 0.005 25.8 5.9 84 71-160 261-347 (354)
162 PF12937 F-box-like: F-box-lik 23.0 1.2E+02 0.0026 18.3 3.0 22 191-212 3-25 (47)
163 KOG2132 Uncharacterized conser 22.6 93 0.002 28.1 3.2 81 79-160 238-349 (355)
164 PRK01322 6-carboxyhexanoate--C 21.1 1.7E+02 0.0037 25.2 4.4 60 12-81 161-221 (242)
165 PF02787 CPSase_L_D3: Carbamoy 21.0 81 0.0018 24.0 2.2 23 191-213 72-94 (123)
166 TIGR02408 ectoine_ThpD ectoine 20.4 1.2E+02 0.0027 26.0 3.5 38 138-175 212-251 (277)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.95 E-value=7.3e-27 Score=209.88 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=144.0
Q ss_pred cccCCCccccCCccccccccCCCCCCCCCCceEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCE
Q 044045 43 FACMDPKLAQANHFTFSGLHVAGNTSNPLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGS 122 (215)
Q Consensus 43 ~~ck~p~~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~ 122 (215)
.+-+.+..-.++.|+|++...++. ...|++++.+++.+||+++ ++++++++++||++.++|||++++|++||++|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~p~--~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~ 276 (367)
T TIGR03404 201 EAVTGPAGEVPGPFTYHLSEQKPK--QVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQ 276 (367)
T ss_pred ccCcCCCCCCCccEEEEhhhCCce--ecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEE
Confidence 334456666677899998887774 3667889999999999987 489999999999999999999999999999999
Q ss_pred EEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeeechhhhcCCCCCCHHHHHHHcC
Q 044045 123 LDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPSIADDLLAKAFQ 202 (215)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~p~~vl~~af~ 202 (215)
+++++.+++ ++.+++.+++||+++||+|..|+++|.|++++++++++++..++.+.+++|+.. +|.+||+++|+
T Consensus 277 ~~~~v~d~~--g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~~----~p~~vl~~~~~ 350 (367)
T TIGR03404 277 ARMTVFAAG--GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLAL----TPPQLVAAHLN 350 (367)
T ss_pred EEEEEEecC--CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHhh----CCHHHHHHHhC
Confidence 999998765 444589999999999999999999999999999999999999999999998743 89999999999
Q ss_pred CCHHHHHhhhcC
Q 044045 203 LDKSVVGQLQTK 214 (215)
Q Consensus 203 ~~~~~v~~l~~~ 214 (215)
++++++++|++.
T Consensus 351 ~~~~~~~~l~~~ 362 (367)
T TIGR03404 351 LDDEVIDSLKKE 362 (367)
T ss_pred cCHHHHHhcccc
Confidence 999999999864
No 2
>PLN00212 glutelin; Provisional
Probab=99.91 E-value=1.5e-23 Score=193.39 Aligned_cols=145 Identities=22% Similarity=0.392 Sum_probs=125.2
Q ss_pred CCCCCCCCceEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCC
Q 044045 65 GNTSNPLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKG 144 (215)
Q Consensus 65 ~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~G 144 (215)
.++.++.+++++.+++.+||+|+++++++.+++|.||++.+||||++|+|++||++|+++++++++++ ++++..+|++|
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g-~~vf~~~L~~G 400 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG-KTVFNGVLRPG 400 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC-CEEEEEEEcCC
Confidence 34558889999999999999999999999999999999999999999999999999999999998776 78899999999
Q ss_pred CEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeeec--hhhhcCCCCCCHHHHHHHcCCCHHHHHhhhcC
Q 044045 145 DVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVITIA--NAVFGSNPSIADDLLAKAFQLDKSVVGQLQTK 214 (215)
Q Consensus 145 Dv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~p~~vl~~af~~~~~~v~~l~~~ 214 (215)
|+++||+|.+|..... ++...+++.-.+.++-...++ .++|.. ||.+||+++|+++++++++||.+
T Consensus 401 dvfVVPqg~~v~~~A~-~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n 468 (493)
T PLN00212 401 QLLIIPQHYAVLKKAE-REGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNN 468 (493)
T ss_pred CEEEECCCCeEEEeec-CCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999987664 455777765544444333333 578885 99999999999999999999864
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.90 E-value=1.2e-22 Score=182.76 Aligned_cols=135 Identities=23% Similarity=0.315 Sum_probs=118.8
Q ss_pred CCCceEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEE
Q 044045 70 PLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVF 149 (215)
Q Consensus 70 ~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 149 (215)
..|++++.++..+||++++ +++.++++.||++.++|||. +.|++||++|++++++++++ ++.+.+.|++||+++|
T Consensus 48 ~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~--g~~~~~~L~~GD~~~f 122 (367)
T TIGR03404 48 ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDEN--GRNYIDDVGAGDLWYF 122 (367)
T ss_pred ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCC--CcEEEeEECCCCEEEE
Confidence 3677999999999999986 79999999999999999996 78999999999999999765 6766778999999999
Q ss_pred cCCCeEEEEeCCCCcEEEEEEEcCCC---CceeeechhhhcCCCCCCHHHHHHHcCCCHHHHHhhhcC
Q 044045 150 PIGLAHFQRNVGHGNAFSISALSSQN---PGVITIANAVFGSNPSIADDLLAKAFQLDKSVVGQLQTK 214 (215)
Q Consensus 150 P~G~~H~~~N~g~~~a~~l~~~~s~~---pg~~~~~~~lf~~~p~~p~~vl~~af~~~~~~v~~l~~~ 214 (215)
|+|.+|+++|.+ +.++++.++++.. +..+.+.++ |++ +|++||+++|+++++++++|+++
T Consensus 123 P~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~~---~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 123 PPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LAH---TPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred CCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HHh---CCHHHHHHHhCCCHHHHHhcccc
Confidence 999999999985 5688888887653 456777776 465 99999999999999999999874
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.89 E-value=1.2e-22 Score=160.13 Aligned_cols=128 Identities=35% Similarity=0.504 Sum_probs=105.7
Q ss_pred CCCCceEEEeecccCCCCCcC-ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCC---CeeEEEE--Ec
Q 044045 69 NPLGSRVTPVTVAQIPGLNTL-GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPE---NRLITKV--LK 142 (215)
Q Consensus 69 ~~~g~~~~~~~~~~~P~l~~~-gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~---~~~~~~~--L~ 142 (215)
+..+++++.++..++|.+.+. ++.+.+..+.||++..|||| ++.|++||++|+++++++.+++. .+....+ ++
T Consensus 11 ~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~ 89 (144)
T PF00190_consen 11 SNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLK 89 (144)
T ss_dssp EETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEE
T ss_pred cCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeee
Confidence 456778999999999955444 55666677799999999999 79999999999999999987520 0344555 99
Q ss_pred CCCEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeeechhhhcCCCCCCHHHHHHHcCCCHHHHH
Q 044045 143 KGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPSIADDLLAKAFQLDKSVVG 209 (215)
Q Consensus 143 ~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~p~~vl~~af~~~~~~v~ 209 (215)
+||++++|+|.+||+.|.++++...+.++.+.++... +|+++++++|++++++++
T Consensus 90 ~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~~ 144 (144)
T PF00190_consen 90 AGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEVQ 144 (144)
T ss_dssp TTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHHB
T ss_pred cccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcCC
Confidence 9999999999999999999888888888888777765 789999999999998864
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.86 E-value=2.4e-20 Score=147.44 Aligned_cols=136 Identities=38% Similarity=0.624 Sum_probs=116.4
Q ss_pred CCCCceEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEE
Q 044045 69 NPLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFV 148 (215)
Q Consensus 69 ~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~ 148 (215)
+..|++++.++...+|.+++.++.+.+++++||+..++|+|+++.|++||++|++++.+.+..+ ++.+.+.+++||+++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~-~~~~~~~l~~GD~~~ 86 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNG-NKVYDARLREGDVFV 86 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCC-CeEEEEEecCCCEEE
Confidence 4567779999999999999999999999999999999999988899999999999999876532 355689999999999
Q ss_pred EcCCCeEEEEeCCCCcEEEEEEEcCCCCceeee---chhhhcCCCCCCHHHHHHHcCCCHHHHH
Q 044045 149 FPIGLAHFQRNVGHGNAFSISALSSQNPGVITI---ANAVFGSNPSIADDLLAKAFQLDKSVVG 209 (215)
Q Consensus 149 ~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~---~~~lf~~~p~~p~~vl~~af~~~~~~v~ 209 (215)
||+|..|++.|.+++++++++ +.+++|..... ..++|+. +++++++++|++++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 146 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLRG---LPPEVLAAAFGVSAEEVR 146 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhhc---CCHHHHHHHhCcChHHcC
Confidence 999999999999999999985 66666654322 2466775 999999999999998753
No 6
>PLN00212 glutelin; Provisional
Probab=99.82 E-value=3.6e-19 Score=164.42 Aligned_cols=140 Identities=20% Similarity=0.349 Sum_probs=114.7
Q ss_pred CCCceEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCC-----------------
Q 044045 70 PLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNP----------------- 132 (215)
Q Consensus 70 ~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~----------------- 132 (215)
..|+ +++....+.+.+.+.|+++.|++|+|+|+..||+|. +.+++||++|++.++++.++-
T Consensus 60 se~G-~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~n-a~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~ 137 (493)
T PLN00212 60 SEAG-VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYSN-TPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQS 137 (493)
T ss_pred ccCc-eeeecCCCChhhcccceEEEEEEecCCcccCccccC-CCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccc
Confidence 3444 667777889999999999999999999999999995 999999999999999996420
Q ss_pred ------CCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCC--------ceeeec----------------
Q 044045 133 ------ENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNP--------GVITIA---------------- 182 (215)
Q Consensus 133 ------~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~p--------g~~~~~---------------- 182 (215)
|.....+.|++||+++||+|++||++|.|+++++++.+++..++ ..+.++
T Consensus 138 ~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~ 217 (493)
T PLN00212 138 QSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQ 217 (493)
T ss_pred cccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccc
Confidence 00111369999999999999999999999999988888754332 233333
Q ss_pred ---hhhhcCCCCCCHHHHHHHcCCCHHHHHhhhcC
Q 044045 183 ---NAVFGSNPSIADDLLAKAFQLDKSVVGQLQTK 214 (215)
Q Consensus 183 ---~~lf~~~p~~p~~vl~~af~~~~~~v~~l~~~ 214 (215)
.++|+. |++++|+.||+++.++++||+.+
T Consensus 218 ~~~~nifsG---F~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 218 HSGQNIFSG---FSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred cccCchhhc---CCHHHHHHHHCCCHHHHHHHhcc
Confidence 248885 99999999999999999999754
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.77 E-value=5.1e-18 Score=140.02 Aligned_cols=146 Identities=18% Similarity=0.240 Sum_probs=127.1
Q ss_pred cCCccccccccCCCCCCCCCCceEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCCCccE--EEEEEeCEEEEEEEe
Q 044045 52 QANHFTFSGLHVAGNTSNPLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATE--ILTVIEGSLDVGFVT 129 (215)
Q Consensus 52 ~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E--~~~Vl~G~~~~~~~~ 129 (215)
..+||+|....+.+.. .|+.+.......+|+. .-..+.+.||++...||||+++| +.||++|+.++.+..
T Consensus 49 ~~~~~~yel~~~~~~~---~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGE---RGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeecccccc---cCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 6789999987766544 3888999999999986 45678899999999999999999 999999999999988
Q ss_pred cCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeeechhhhcCCCCCCHHHHHHHcCCCHHHHH
Q 044045 130 SNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVITIANAVFGSNPSIADDLLAKAFQLDKSVVG 209 (215)
Q Consensus 130 ~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~p~~vl~~af~~~~~~v~ 209 (215)
++ ++.++..+++||++++|++..|+..|+|+++.+++.++....+....+..++++ ++..+++..++.+.+.++
T Consensus 121 ~~--G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~D 194 (209)
T COG2140 121 PE--GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYVD 194 (209)
T ss_pred CC--CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCccccc
Confidence 76 677899999999999999999999999999999999999888888888888766 688888888887766665
Q ss_pred hh
Q 044045 210 QL 211 (215)
Q Consensus 210 ~l 211 (215)
.+
T Consensus 195 ~p 196 (209)
T COG2140 195 VP 196 (209)
T ss_pred Cc
Confidence 54
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.52 E-value=5.4e-14 Score=96.81 Aligned_cols=70 Identities=31% Similarity=0.474 Sum_probs=63.6
Q ss_pred EEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 044045 95 RIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISAL 171 (215)
Q Consensus 95 ~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~ 171 (215)
+++++||+..++|+|+...|++||++|++++.+. ++ ...+++||.+++|+|..|.+.|.+++++++++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~-----~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD-----GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEET-----TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEc-----cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 5789999999999999666999999999999964 44 8999999999999999999999999999999875
No 9
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.43 E-value=1.1e-12 Score=103.58 Aligned_cols=94 Identities=23% Similarity=0.245 Sum_probs=76.0
Q ss_pred ccCCCCCcCceEEEEEEEcCCcc-CCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCC--CeEEE
Q 044045 81 AQIPGLNTLGASLARIDYAPWGV-IPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIG--LAHFQ 157 (215)
Q Consensus 81 ~~~P~l~~~gis~~~~~l~pgg~-~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G--~~H~~ 157 (215)
..+-||..-|+-+ ..++||+. ...|||...+|++|||+|++++.+.+ . .+.|++||++-||+| ..|.+
T Consensus 34 G~~~Gl~~fGvn~--~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~-----~--e~~lrpGD~~gFpAG~~~aHhl 104 (161)
T COG3837 34 GDALGLKRFGVNL--EIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG-----G--ETRLRPGDSAGFPAGVGNAHHL 104 (161)
T ss_pred hhhcChhhcccce--EEeCCCCccccccccccCceEEEEEcCceEEEECC-----e--eEEecCCceeeccCCCcceeEE
Confidence 4556666545544 55899996 46899999999999999999999863 3 799999999999999 99999
Q ss_pred EeCCCCcEEEEEEEcCCCCceeeech
Q 044045 158 RNVGHGNAFSISALSSQNPGVITIAN 183 (215)
Q Consensus 158 ~N~g~~~a~~l~~~~s~~pg~~~~~~ 183 (215)
.|.++..++++++-+...-....+++
T Consensus 105 iN~s~~~~~yL~vG~r~~~d~i~YPd 130 (161)
T COG3837 105 INRSDVILRYLEVGTREPDDIITYPD 130 (161)
T ss_pred eecCCceEEEEEeccccccceeecCC
Confidence 99999999999886655545555543
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.43 E-value=2.3e-12 Score=99.62 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=71.1
Q ss_pred CceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEE-EEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEE
Q 044045 89 LGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVG-FVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFS 167 (215)
Q Consensus 89 ~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~-~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 167 (215)
.++++.+++++||+..+.|+|.. .|++||++|++++. +.+ ++ ++.|++||+++||++.+|.+.|. +++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~----g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~ 103 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT----GE--VHPIRPGTMYALDKHDRHYLRAG--EDMRL 103 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC----CE--EEEeCCCeEEEECCCCcEEEEcC--CCEEE
Confidence 46789999999999989999974 69999999999998 531 34 89999999999999999999997 89999
Q ss_pred EEEEcCCCCcee
Q 044045 168 ISALSSQNPGVI 179 (215)
Q Consensus 168 l~~~~s~~pg~~ 179 (215)
+++++..-+|..
T Consensus 104 l~v~tP~~~~~~ 115 (125)
T PRK13290 104 VCVFNPPLTGRE 115 (125)
T ss_pred EEEECCCCCCcc
Confidence 999886666654
No 11
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.42 E-value=2e-12 Score=100.12 Aligned_cols=86 Identities=27% Similarity=0.394 Sum_probs=73.3
Q ss_pred ccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeC
Q 044045 81 AQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNV 160 (215)
Q Consensus 81 ~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 160 (215)
...+...+..+.+.++.++||+..++|+||...+.+||++|++++++.+ + .+++++||++++|+|..|+..|.
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g-----~--~~~l~~Gd~i~ip~g~~H~~~a~ 105 (131)
T COG1917 33 RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG-----E--KKELKAGDVIIIPPGVVHGLKAV 105 (131)
T ss_pred eeccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecC-----C--ceEecCCCEEEECCCCeeeeccC
Confidence 4445445667889999999999999999986789999999999999972 2 79999999999999999999999
Q ss_pred CCCcEEEEEEEcC
Q 044045 161 GHGNAFSISALSS 173 (215)
Q Consensus 161 g~~~a~~l~~~~s 173 (215)
++.....++++..
T Consensus 106 ~~~~~~~l~v~~~ 118 (131)
T COG1917 106 EDEPMVLLLVFPL 118 (131)
T ss_pred CCCceeEEEEeee
Confidence 9887666666654
No 12
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=3.6e-12 Score=98.62 Aligned_cols=82 Identities=30% Similarity=0.282 Sum_probs=72.9
Q ss_pred CceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 89 LGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 89 ~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
...++.++.+.||+...+|.|.+.+|++||++|++.+.+. ++ ...|++||++++|+|..|+..|.|..++.++
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~-----~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~li 106 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG-----GE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLI 106 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC-----CE--EEEecCCCEEEECCCCcEEEEcCCCcceEEE
Confidence 4678999999999998888888789999999999999996 34 8999999999999999999999999999999
Q ss_pred EEEcCCCCc
Q 044045 169 SALSSQNPG 177 (215)
Q Consensus 169 ~~~~s~~pg 177 (215)
.+......+
T Consensus 107 ei~~p~~~~ 115 (127)
T COG0662 107 EVQSPPYLG 115 (127)
T ss_pred EEecCCcCC
Confidence 886554433
No 13
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.34 E-value=3e-11 Score=99.78 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=74.9
Q ss_pred CCCcCceEEEEEEEcCCcc------CCCccCCCc--cEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEE
Q 044045 85 GLNTLGASLARIDYAPWGV------IPPHVHPRA--TEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHF 156 (215)
Q Consensus 85 ~l~~~gis~~~~~l~pgg~------~~pH~Hp~a--~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~ 156 (215)
.....++.+....++||.. .+.|+|++. .|+.||++|+..+.+.+.+ +......+++||+++||+|..|.
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~--G~~~~~~v~pGd~v~IPpg~~H~ 139 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE--GEARWIEMEPGTVVYVPPYWAHR 139 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC--CcEEEEEECCCCEEEECCCCcEE
Confidence 3455678999999999986 567999754 4999999999999987654 34457999999999999999999
Q ss_pred EEeCCCCcEEEEEEEcCC
Q 044045 157 QRNVGHGNAFSISALSSQ 174 (215)
Q Consensus 157 ~~N~g~~~a~~l~~~~s~ 174 (215)
..|.|++++++++++...
T Consensus 140 ~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 140 SVNTGDEPLVFLACYPAD 157 (191)
T ss_pred eEECCCCCEEEEEEEcCC
Confidence 999999999999988543
No 14
>PRK11171 hypothetical protein; Provisional
Probab=99.30 E-value=9.4e-11 Score=101.53 Aligned_cols=109 Identities=18% Similarity=0.090 Sum_probs=82.3
Q ss_pred CCccccCCccccccccCCCCCCCCCCceEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCC-CccEEEEEEeCEEEE
Q 044045 47 DPKLAQANHFTFSGLHVAGNTSNPLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHP-RATEILTVIEGSLDV 125 (215)
Q Consensus 47 ~p~~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp-~a~E~~~Vl~G~~~~ 125 (215)
+.+.+++++.+.+.+..- .+..++.+... ....++.+.+++++||+....|.|. ...|++||++|++++
T Consensus 27 ~~a~~~p~~~v~~~lp~~------~~~~~~~L~~~----~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v 96 (266)
T PRK11171 27 AYAVIPPDDIVTSVLPGW------ENTRAWVLARP----GLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITL 96 (266)
T ss_pred CeEEECCcCEEeecCCCC------CCeEEEEEeCC----CCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEE
Confidence 345566666666654322 22233333332 2245689999999999987766664 568999999999999
Q ss_pred EEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 044045 126 GFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALS 172 (215)
Q Consensus 126 ~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~ 172 (215)
.+. ++ ++.|++||.++||++..|.+.|.|+++++++++..
T Consensus 97 ~~~-----g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~ 136 (266)
T PRK11171 97 TLE-----GK--THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK 136 (266)
T ss_pred EEC-----CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc
Confidence 985 34 89999999999999999999999999999998763
No 15
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.27 E-value=6.9e-11 Score=96.77 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=65.7
Q ss_pred CceEEEEEEEcCCccCC-CccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEE
Q 044045 89 LGASLARIDYAPWGVIP-PHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFS 167 (215)
Q Consensus 89 ~gis~~~~~l~pgg~~~-pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 167 (215)
..+.+....++||+... .|+|+ +.|++||++|++++.+. ++ .+.|++||+++||++.+|.+.|.+++++++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~-----~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~ 176 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTIN-----GQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRI 176 (185)
T ss_pred CeeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEEC-----CE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEE
Confidence 35677778899998654 66777 79999999999999985 34 899999999999999999999999999999
Q ss_pred EEEEc
Q 044045 168 ISALS 172 (215)
Q Consensus 168 l~~~~ 172 (215)
+++..
T Consensus 177 l~~~~ 181 (185)
T PRK09943 177 ISAHT 181 (185)
T ss_pred EEEeC
Confidence 98764
No 16
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.24 E-value=9.3e-11 Score=108.94 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=70.9
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEE
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 169 (215)
++.+.+++++||+..+.|+|++..|.+||++|++++.+. ++ ++.|++||+++||+|.+|.+.|.|++++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d-----g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~ 447 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG-----DE--TLLLTENESTYIPLGVIHRLENPGKIPLELIE 447 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC-----CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 678899999999988889988889999999999999986 44 89999999999999999999999999999999
Q ss_pred EEcCC
Q 044045 170 ALSSQ 174 (215)
Q Consensus 170 ~~~s~ 174 (215)
+...+
T Consensus 448 v~~~~ 452 (468)
T TIGR01479 448 VQSGS 452 (468)
T ss_pred EEcCC
Confidence 87643
No 17
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.22 E-value=1.1e-10 Score=108.58 Aligned_cols=78 Identities=22% Similarity=0.252 Sum_probs=70.2
Q ss_pred CceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 89 LGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 89 ~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
.++.+.+++++||+....|+|....|.+||++|++++++. ++ ++.|++||+++||+|.+|.++|.|+++++++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id-----g~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI 455 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID-----GD--IKLLGENESIYIPLGATHCLENPGKIPLDLI 455 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC-----CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 3678899999999987778877778999999999999996 44 8999999999999999999999999999999
Q ss_pred EEEcC
Q 044045 169 SALSS 173 (215)
Q Consensus 169 ~~~~s 173 (215)
++...
T Consensus 456 ~V~~g 460 (478)
T PRK15460 456 EVRSG 460 (478)
T ss_pred EEEcC
Confidence 98754
No 18
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=1.6e-10 Score=87.33 Aligned_cols=83 Identities=24% Similarity=0.363 Sum_probs=73.0
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCee-EEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRL-ITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~-~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
|+.+..++++||+....|.|..-+-.+||++|+...+++ +++ +..+..+||.++||+|++|.-.|.+++++..+
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G-----~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~v 119 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG-----NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAV 119 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec-----cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEE
Confidence 788999999999999999998666789999999999997 444 46688999999999999999999999999999
Q ss_pred EEEcCCCCc
Q 044045 169 SALSSQNPG 177 (215)
Q Consensus 169 ~~~~s~~pg 177 (215)
.+.+..++.
T Consensus 120 IaRsDp~~~ 128 (142)
T COG4101 120 IARSDPNPQ 128 (142)
T ss_pred EEccCCCCC
Confidence 887766554
No 19
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.13 E-value=8.1e-10 Score=95.42 Aligned_cols=77 Identities=18% Similarity=0.086 Sum_probs=66.6
Q ss_pred CceEEEEEEEcCCccCC-CccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEE
Q 044045 89 LGASLARIDYAPWGVIP-PHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFS 167 (215)
Q Consensus 89 ~gis~~~~~l~pgg~~~-pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 167 (215)
..+.+.+++++||+... +|+|+...|++||++|++++.+. ++ ++.|++||.+++|+|..|.+.|.+++++++
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~-----g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~ 128 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE-----GE--THELREGGYAYLPPGSKWTLANAQAEDARF 128 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC-----CE--EEEECCCCEEEECCCCCEEEEECCCCCEEE
Confidence 35889999999987554 56677568999999999999875 34 789999999999999999999999999999
Q ss_pred EEEEc
Q 044045 168 ISALS 172 (215)
Q Consensus 168 l~~~~ 172 (215)
+++-.
T Consensus 129 l~v~k 133 (260)
T TIGR03214 129 FLYKK 133 (260)
T ss_pred EEEEe
Confidence 98763
No 20
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.12 E-value=7.5e-10 Score=88.27 Aligned_cols=77 Identities=26% Similarity=0.318 Sum_probs=70.1
Q ss_pred CceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 89 LGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 89 ~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
.+..+-++.+.||....+|.|....|..+|++|++.+.+. ++ .+.+++||++++|+|..|.+.|.|+.++.++
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~-----~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~I 133 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD-----DE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEII 133 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC-----CE--EEEEcCCCEEEECCCCEEEEECCCCcCcEEE
Confidence 3577899999999999999998889999999999999985 34 8999999999999999999999999999999
Q ss_pred EEEc
Q 044045 169 SALS 172 (215)
Q Consensus 169 ~~~~ 172 (215)
.+-.
T Consensus 134 EVq~ 137 (151)
T PF01050_consen 134 EVQT 137 (151)
T ss_pred EEec
Confidence 7643
No 21
>PRK11171 hypothetical protein; Provisional
Probab=99.08 E-value=1.9e-09 Score=93.39 Aligned_cols=74 Identities=18% Similarity=0.086 Sum_probs=65.8
Q ss_pred ceEEEEEEEcCCccCCCc-cCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 90 GASLARIDYAPWGVIPPH-VHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH-~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
.+.+.+++|+||+..+.| +|. ..|.+||++|++++.++ ++ .+.|++||++.|+++.+|++.|.|+++++++
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~-~ee~i~Vl~G~~~~~~~-----~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl 254 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHV-MEHGLYVLEGKGVYRLN-----ND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYL 254 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCC-ceEEEEEEeCEEEEEEC-----CE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEE
Confidence 468999999999998885 555 78999999999999885 34 8999999999999999999999999999998
Q ss_pred EEE
Q 044045 169 SAL 171 (215)
Q Consensus 169 ~~~ 171 (215)
..=
T Consensus 255 ~~k 257 (266)
T PRK11171 255 LYK 257 (266)
T ss_pred EEc
Confidence 643
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.06 E-value=1.5e-09 Score=93.73 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=64.4
Q ss_pred ceEEEEEEEcCCccCCC-ccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 90 GASLARIDYAPWGVIPP-HVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 90 gis~~~~~l~pgg~~~p-H~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
++.+.+++++||+..+. |.|. .+|.+||++|++.+.++ ++ ...+++||++++|++.+|++.|.|+++.+++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~~-----g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l 249 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNLD-----NN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYL 249 (260)
T ss_pred CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEEC-----CE--EEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence 57788899999999996 4555 77889999999999875 44 8999999999999999999999999999988
Q ss_pred EE
Q 044045 169 SA 170 (215)
Q Consensus 169 ~~ 170 (215)
..
T Consensus 250 ~y 251 (260)
T TIGR03214 250 LY 251 (260)
T ss_pred EE
Confidence 53
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.97 E-value=1.1e-08 Score=80.38 Aligned_cols=95 Identities=19% Similarity=0.223 Sum_probs=61.5
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCC--CCeeEEEEEcCCCEEEEcCCCeEEEEeCC-CCcEE
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNP--ENRLITKVLKKGDVFVFPIGLAHFQRNVG-HGNAF 166 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~--~~~~~~~~L~~GDv~~~P~G~~H~~~N~g-~~~a~ 166 (215)
.+.+..-++.||...|+|.|. .+|+++|++|+++..+..... .++..++.+-+++.+.||.+..|..+|.+ .+++.
T Consensus 43 evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 468888899999999999999 899999999999998875431 15556899999999999999999999999 58999
Q ss_pred EEEEEcCCCCceeeechhh
Q 044045 167 SISALSSQNPGVITIANAV 185 (215)
Q Consensus 167 ~l~~~~s~~pg~~~~~~~l 185 (215)
++++++..--.++.+.+|.
T Consensus 122 vlViiSrpPvkvf~y~dw~ 140 (167)
T PF02041_consen 122 VLVIISRPPVKVFIYDDWS 140 (167)
T ss_dssp EEEEEESSS--EEEESSTT
T ss_pred EEEEecCCCeEEEEecccc
Confidence 9988776555666776664
No 24
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.75 E-value=6.8e-08 Score=77.31 Aligned_cols=61 Identities=16% Similarity=0.324 Sum_probs=51.5
Q ss_pred cCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCC
Q 044045 99 APWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHG 163 (215)
Q Consensus 99 ~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 163 (215)
.||....+|.|+ ++|++|+++|++.+.+.+. ++.....|++||++++|+|++|.....++.
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~---g~~~~v~L~eGd~flvP~gvpHsP~r~~~t 96 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE---GKREDVPIREGDIFLLPPHVPHSPQRPAGS 96 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC---CcEEEEEECCCCEEEeCCCCCcccccCCCc
Confidence 566667789888 8999999999999998764 455589999999999999999999875443
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.74 E-value=6.3e-08 Score=78.68 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=51.2
Q ss_pred cCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeC
Q 044045 99 APWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNV 160 (215)
Q Consensus 99 ~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 160 (215)
.||.....|+|+ ++|++|+++|++.+.+.+. ++.....|++||++++|+|++|..+..
T Consensus 42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~---g~~~~v~L~eGd~fllP~gvpHsP~r~ 99 (177)
T PRK13264 42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQED---GKRRDVPIREGEMFLLPPHVPHSPQRE 99 (177)
T ss_pred cCCcccccccCC-CceEEEEECCeEEEEEEcC---CceeeEEECCCCEEEeCCCCCcCCccC
Confidence 677788899999 8999999999999999864 554589999999999999999999774
No 26
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.67 E-value=3.9e-07 Score=74.68 Aligned_cols=85 Identities=22% Similarity=0.214 Sum_probs=57.5
Q ss_pred CcCceEEEEEEEcCCccC------CCccCCC------ccEEEEEEeCEEEEEEEecCCCC----eeEEEEEcCCCEEEEc
Q 044045 87 NTLGASLARIDYAPWGVI------PPHVHPR------ATEILTVIEGSLDVGFVTSNPEN----RLITKVLKKGDVFVFP 150 (215)
Q Consensus 87 ~~~gis~~~~~l~pgg~~------~pH~Hp~------a~E~~~Vl~G~~~~~~~~~~~~~----~~~~~~L~~GDv~~~P 150 (215)
...++......+.||.+- .-|+|+. ..|+.+|++|++.+-+-+.+ + +.+...+++||+++||
T Consensus 46 ~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~--~~~~~~~~~v~~~~G~~v~IP 123 (182)
T PF06560_consen 46 QKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEE--GDDVGDVIAVEAKPGDVVYIP 123 (182)
T ss_dssp ----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TT--S-----EEEEEE-TTEEEEE-
T ss_pred eeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecC--CCcceeEEEEEeCCCCEEEEC
Confidence 344677888889998643 4699997 79999999999999988765 4 6678899999999999
Q ss_pred CCCeEEEEeCCCCcEEEEEEEcC
Q 044045 151 IGLAHFQRNVGHGNAFSISALSS 173 (215)
Q Consensus 151 ~G~~H~~~N~g~~~a~~l~~~~s 173 (215)
++..|...|+|++++++.....+
T Consensus 124 p~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 124 PGYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp TT-EEEEEE-SSS-EEEEEEEET
T ss_pred CCceEEEEECCCCcEEEEEEEec
Confidence 99999999999999998877754
No 27
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.59 E-value=5.1e-07 Score=65.21 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=55.0
Q ss_pred ceEEEEEEEcCCccCCC-ccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 90 GASLARIDYAPWGVIPP-HVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 90 gis~~~~~l~pgg~~~p-H~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
.++...++|+||+.-++ +.+. ..-++||++|.+++++.+ . +..+.+|+++.+|+|-...+.|.++++|+++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~-~~~vF~V~~G~v~Vti~~-----~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRD-NTMVFYVIKGKVEVTIHE-----T--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--S-EEEEEEEEESEEEEEETT-----E--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCC-cEEEEEEEeCEEEEEEcC-----c--EEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 46788999999998765 4454 688899999999999963 3 7999999999999999999999999999987
Q ss_pred E
Q 044045 169 S 169 (215)
Q Consensus 169 ~ 169 (215)
-
T Consensus 83 F 83 (85)
T PF11699_consen 83 F 83 (85)
T ss_dssp E
T ss_pred E
Confidence 4
No 28
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.53 E-value=2e-07 Score=67.82 Aligned_cols=81 Identities=26% Similarity=0.458 Sum_probs=58.4
Q ss_pred CCceEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEc
Q 044045 71 LGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFP 150 (215)
Q Consensus 71 ~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 150 (215)
.|.++..+.... . ..|..+..++++||+..+.|.|+ +.|.+|||+|++.. . + ..+.+||.++.|
T Consensus 8 ~Gv~~~~L~~~~--~--~~g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~---~----~~~~~G~~~~~p 71 (91)
T PF12973_consen 8 PGVSVKPLHRDE--G--ETGERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----G---D----GRYGAGDWLRLP 71 (91)
T ss_dssp TTEEEEEEEECS--S--STTEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----T---T----CEEETTEEEEE-
T ss_pred CCEEEEEeccCC--C--cccCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----C---C----ccCCCCeEEEeC
Confidence 444555554322 1 12567888999999999999999 78888999999884 2 1 346999999999
Q ss_pred CCCeEEEEeCCCCcEEEEE
Q 044045 151 IGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 151 ~G~~H~~~N~g~~~a~~l~ 169 (215)
+|..|.... ++.|.++.
T Consensus 72 ~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 72 PGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TTEEEEEEE--SSCEEEEE
T ss_pred CCCccccCc--CCCEEEEE
Confidence 999999984 45576664
No 29
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.51 E-value=4.9e-07 Score=68.08 Aligned_cols=64 Identities=27% Similarity=0.276 Sum_probs=47.1
Q ss_pred CCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 044045 100 PWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISAL 171 (215)
Q Consensus 100 pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~ 171 (215)
++-..++|+|+ .-|+.||++|++++.+. ++ .+.+++||++++|+|.+|.+...++++...+.+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~-----~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHID-----GQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEET-----TE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEEC-----CE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 44456789999 89999999999999875 44 8999999999999999999998887677766544
No 30
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.48 E-value=5.1e-07 Score=75.98 Aligned_cols=72 Identities=24% Similarity=0.327 Sum_probs=62.5
Q ss_pred eEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEE
Q 044045 91 ASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISA 170 (215)
Q Consensus 91 is~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~ 170 (215)
..+..++++||+..+.|.|. +.|+.+|++|++. ++ ...+.+||++..|.|..|...+.++++++++++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de-------~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v 194 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DE-------TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAV 194 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cC-------CCccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence 45678889999999999997 8999999999953 32 356899999999999999999999999999998
Q ss_pred EcCC
Q 044045 171 LSSQ 174 (215)
Q Consensus 171 ~~s~ 174 (215)
.+..
T Consensus 195 ~dap 198 (215)
T TIGR02451 195 LDAP 198 (215)
T ss_pred ecCC
Confidence 8653
No 31
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.47 E-value=2.5e-06 Score=71.95 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=52.4
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEE
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 169 (215)
.++...+.++-. ..+||....|+.||++|++++.+. ++ ++.+++||+++||+|..|.+...+ .++++.
T Consensus 156 ~m~aGf~~~~~~---sf~wtl~~dEi~YVLEGe~~l~Id-----G~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRfly 223 (233)
T PRK15457 156 SMAAGFMQWENA---FFPWTLNYDEIDMVLEGELHVRHE-----GE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLY 223 (233)
T ss_pred ceeeEEEEEecC---ccceeccceEEEEEEEeEEEEEEC-----CE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEE
Confidence 455555556542 345776689999999999999985 44 899999999999999996665554 566655
Q ss_pred EE
Q 044045 170 AL 171 (215)
Q Consensus 170 ~~ 171 (215)
+.
T Consensus 224 V~ 225 (233)
T PRK15457 224 VA 225 (233)
T ss_pred EE
Confidence 44
No 32
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.38 E-value=4.1e-06 Score=67.22 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=52.0
Q ss_pred CCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCce
Q 044045 104 IPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGV 178 (215)
Q Consensus 104 ~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~ 178 (215)
...|.|. ..|+-|+++|++.+.+...+ ++.....+++||.+++|+|+.|++.-..+....++=.|. ..||.
T Consensus 85 ~~EH~H~-deEvR~i~~G~g~Fdvr~~~--~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~-~~~gW 155 (157)
T PF03079_consen 85 FEEHTHE-DEEVRYIVDGSGYFDVRDGD--DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK-DEPGW 155 (157)
T ss_dssp CS-EEES-S-EEEEEEECEEEEEEE-TT--CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES-SCGGE
T ss_pred heeEecC-hheEEEEeCcEEEEEEEcCC--CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec-CCCCc
Confidence 4689999 79999999999999998664 565568999999999999999999876666677776664 34443
No 33
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.38 E-value=1.8e-06 Score=75.88 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=50.3
Q ss_pred EEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 044045 97 DYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGH 162 (215)
Q Consensus 97 ~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 162 (215)
.-+|..+.++|||. .-|+.|+++|++.+.+. ++ .+.+++||++++++|.+|.+...++
T Consensus 32 ~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i~-----g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 32 FRPPHIMPTSHWHG-QVEVNVPFDGDVEYLIN-----NE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred eeCCCCCCCCCccc-cEEEEEecCCcEEEEEC-----CE--EEEEcCCcEEEEecCCcccccccCC
Confidence 35677888999999 89999999999998875 45 8999999999999999998866554
No 34
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.21 E-value=1.4e-05 Score=64.30 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=60.7
Q ss_pred CCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceee
Q 044045 105 PPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVIT 180 (215)
Q Consensus 105 ~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~ 180 (215)
.-|.|. ..|+-|++.|++.+.+...+ ++++...+++||.+.+|+|+-||+.-..+...+++=.|. ..+|.+-
T Consensus 89 ~EH~H~-d~EvRy~vaG~GiF~v~~~d--~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWVa 160 (181)
T COG1791 89 QEHLHT-DDEVRYFVAGEGIFDVHSPD--GKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWVA 160 (181)
T ss_pred HHhccC-CceEEEEEecceEEEEECCC--CcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCcee
Confidence 469998 79999999999999999775 788899999999999999999999876666666665554 5677653
No 35
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.15 E-value=4.3e-06 Score=65.04 Aligned_cols=67 Identities=24% Similarity=0.396 Sum_probs=53.9
Q ss_pred CCccCC-CccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 044045 100 PWGVIP-PHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISAL 171 (215)
Q Consensus 100 pgg~~~-pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~ 171 (215)
.|++.+ -|+|.++.|++.|++|+..+.+.+.+ +. +..+..||++++|+|+-|.-. ....+..++..+
T Consensus 51 ~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~--G~--el~v~~GDvlliPAGvGH~rl-~sS~DF~VvGaY 118 (163)
T COG4297 51 RGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGAD--GQ--ELEVGEGDVLLIPAGVGHCRL-HSSADFQVVGAY 118 (163)
T ss_pred cccccccccccCCcceEEEEecceeEEEecCCC--Cc--eeeecCCCEEEEecCcccccc-cCCCCeEEEccc
Confidence 455555 58899999999999999999999876 55 889999999999999999764 344555555555
No 36
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.13 E-value=2.2e-05 Score=67.59 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=44.7
Q ss_pred CccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeC
Q 044045 101 WGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNV 160 (215)
Q Consensus 101 gg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 160 (215)
+...++|||. ..|++||++|++.+.+. ++ .+.+.+||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~-----~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEIN-----GK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEEC-----CE--EEEECCCcEEEeCCCCccceeee
Confidence 3356899998 89999999999999885 44 79999999999999999976543
No 37
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.13 E-value=4.3e-05 Score=58.65 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=72.9
Q ss_pred CCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcE
Q 044045 86 LNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNA 165 (215)
Q Consensus 86 l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a 165 (215)
-.+.|+|+..-.+.+|.-...|+-. --|.+|+++|++++.-... ++ .+.+++|.+....+.-.|..+... +.
T Consensus 30 ~DgmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~~---G~--~~~i~pGt~YaLd~hD~H~lra~~--dm 101 (126)
T PF06339_consen 30 DDGMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLDT---GE--VHPIKPGTMYALDKHDRHYLRAKT--DM 101 (126)
T ss_pred cCCCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEccC---Cc--EEEcCCCeEEecCCCccEEEEecC--CE
Confidence 3567999999999999999998855 5899999999999988754 55 899999999999999999998754 89
Q ss_pred EEEEEEcCCCCce
Q 044045 166 FSISALSSQNPGV 178 (215)
Q Consensus 166 ~~l~~~~s~~pg~ 178 (215)
+++++||..--|.
T Consensus 102 ~~vCVFnPpltG~ 114 (126)
T PF06339_consen 102 RLVCVFNPPLTGR 114 (126)
T ss_pred EEEEEcCCCCcCc
Confidence 9999998665443
No 38
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.09 E-value=1.1e-05 Score=72.05 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=62.9
Q ss_pred eEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEE
Q 044045 91 ASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISA 170 (215)
Q Consensus 91 is~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~ 170 (215)
+....-.+.||...++|.|. +.-+.+|++|+..+..++ ++ +..+++||+++.|.+.-|...|.|++++..+.+
T Consensus 81 l~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~----g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~ 153 (335)
T TIGR02272 81 LYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVD----GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDG 153 (335)
T ss_pred HHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEEC----CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence 44455568999999999999 889999999999766653 34 899999999999999999999999998777655
Q ss_pred Ec
Q 044045 171 LS 172 (215)
Q Consensus 171 ~~ 172 (215)
++
T Consensus 154 lD 155 (335)
T TIGR02272 154 LD 155 (335)
T ss_pred CC
Confidence 43
No 39
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.08 E-value=1.6e-05 Score=69.07 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=50.0
Q ss_pred eEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 044045 91 ASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGH 162 (215)
Q Consensus 91 is~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 162 (215)
+.+.+ ..+....++|||+ ..|++||++|++++.++ ++ .+.+++||++++|+|.+|.+...++
T Consensus 20 ~~~~~--~~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~-----~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 20 VAVTN--RYPQETFVEHTHQ-FCEIVIVWRGNGLHVLN-----DH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred eEEec--CCCCCCCcccccc-ceeEEEEecCceEEEEC-----Ce--eeeecCCeEEEEcCCCcccccccCC
Confidence 44444 2344456799998 89999999999999985 44 8999999999999999999876543
No 40
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.06 E-value=2.3e-05 Score=69.06 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=47.3
Q ss_pred CCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 044045 100 PWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGH 162 (215)
Q Consensus 100 pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 162 (215)
|....++|||+ ..|++||++|++.+.+. ++ .+.+++||+++|++|..|.+....+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~-----~~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVLN-----DR--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEEC-----CE--EEeecCCeEEEECCCCeecccccCC
Confidence 33446899999 89999999999999886 44 8999999999999999999876554
No 41
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.01 E-value=5.2e-05 Score=63.41 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=64.6
Q ss_pred eEEEEEEEcCCc-cCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEE
Q 044045 91 ASLARIDYAPWG-VIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 91 is~~~~~l~pgg-~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 169 (215)
++-..+++.|+| ...+-.-+++.-++||++|++.+.+. ++ ++.|++|+..++|+|..|..+|...+++++.+
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~-----G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw 133 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE-----GK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHW 133 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc-----Ce--EEEeccCCeEEeCCCCcceEeeccCCceEEEE
Confidence 344567898876 55677778888899999999999986 55 89999999999999999999999999999987
Q ss_pred EEcC
Q 044045 170 ALSS 173 (215)
Q Consensus 170 ~~~s 173 (215)
+-..
T Consensus 134 ~rk~ 137 (264)
T COG3257 134 IRKR 137 (264)
T ss_pred Eeec
Confidence 6543
No 42
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.01 E-value=2.1e-05 Score=67.83 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=48.9
Q ss_pred CccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEE
Q 044045 101 WGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFS 167 (215)
Q Consensus 101 gg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 167 (215)
+...++|||.+.-|++|+++|++.+.+. ++ .+.+++||++++|+|.+|.+...++....+
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~-----~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~ 92 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLD-----EH--EYSEYAPCFFLTPPSVPHGFVTDLDADGHV 92 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEEC-----CE--EEEecCCeEEEeCCCCccccccCCCcceEE
Confidence 3457899998568999999999998875 44 799999999999999999987655443333
No 43
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.94 E-value=6.3e-05 Score=58.52 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=53.2
Q ss_pred CceEEEeeccc-CCCCCcCceEEEEEE-EcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCC-CEEE
Q 044045 72 GSRVTPVTVAQ-IPGLNTLGASLARID-YAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKG-DVFV 148 (215)
Q Consensus 72 g~~~~~~~~~~-~P~l~~~gis~~~~~-l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~G-Dv~~ 148 (215)
.|+++.+.... .|. .- -.+..+. .++|....+|.|....|+++|++|++++.+.+.. ...++.|... ..+.
T Consensus 15 RG~L~~~e~~~~ipf-~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~---~~~~~~L~~~~~~L~ 88 (131)
T PF05523_consen 15 RGSLSVIERFDDIPF-EI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR---EEEEFILDEPNKGLY 88 (131)
T ss_dssp TEEEEEEETTTSSSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS----EEEEEE--TTEEEE
T ss_pred CCcEEEEeccCCCCC-Cc--cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCC---CcEEEEECCCCeEEE
Confidence 33566666553 332 11 1233332 4455458899999999999999999999987643 3357788655 5999
Q ss_pred EcCCCeEEEEeCCCCcEEEEEEEcCC
Q 044045 149 FPIGLAHFQRNVGHGNAFSISALSSQ 174 (215)
Q Consensus 149 ~P~G~~H~~~N~g~~~a~~l~~~~s~ 174 (215)
+|+|+.|.+.|.+.+ +++++ +.+.
T Consensus 89 Ippg~w~~~~~~s~~-svlLv-~as~ 112 (131)
T PF05523_consen 89 IPPGVWHGIKNFSED-SVLLV-LASE 112 (131)
T ss_dssp E-TT-EEEEE---TT--EEEE-EESS
T ss_pred ECCchhhHhhccCCC-cEEEE-EcCC
Confidence 999999999999877 66664 5444
No 44
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.91 E-value=5.8e-05 Score=65.00 Aligned_cols=56 Identities=23% Similarity=0.273 Sum_probs=47.5
Q ss_pred cCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 044045 99 APWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGH 162 (215)
Q Consensus 99 ~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 162 (215)
.|....++|||+ .-|++||++|++++.+. ++ .+.+++||++++|+|.+|.+...++
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~-----~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVLN-----ER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEEC-----CE--EEeecCCcEEEECCCCcccccccCC
Confidence 444456899998 79999999999999885 44 8999999999999999999875444
No 45
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.89 E-value=2.2e-05 Score=67.39 Aligned_cols=73 Identities=30% Similarity=0.382 Sum_probs=47.3
Q ss_pred CceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 89 LGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 89 ~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
.|.+..++++++|-..|||+|. +++-+||++|.+..+ + .+.....|.+|..+..|+|..|.....+.+.+.++
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~----~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--D----PKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--T----EE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred CCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--C----CcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 4788999999999999999999 899999999987763 1 23346789999999999999999877665545444
No 46
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.88 E-value=0.00017 Score=56.96 Aligned_cols=64 Identities=14% Similarity=0.323 Sum_probs=45.2
Q ss_pred EEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCC
Q 044045 96 IDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHG 163 (215)
Q Consensus 96 ~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 163 (215)
+.=.|+...-.|..+ +.|++|.++|...+.+.+. ++.....+++||++..|++++|+-+-..++
T Consensus 38 vVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~---g~~kdi~I~EGe~fLLP~~vpHsP~R~~~t 101 (151)
T PF06052_consen 38 VVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED---GKFKDIPIREGEMFLLPANVPHSPQRPADT 101 (151)
T ss_dssp EEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET---TEEEEEEE-TTEEEEE-TT--EEEEE-TT-
T ss_pred EEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC---CceEEEEeCCCcEEecCCCCCCCCcCCCCc
Confidence 344677777789998 8999999999999999876 677789999999999999999998776543
No 47
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.88 E-value=3.3e-05 Score=67.42 Aligned_cols=95 Identities=22% Similarity=0.230 Sum_probs=77.3
Q ss_pred CCCceEEEeecccCCCCCcCc-e----EEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCC
Q 044045 70 PLGSRVTPVTVAQIPGLNTLG-A----SLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKG 144 (215)
Q Consensus 70 ~~g~~~~~~~~~~~P~l~~~g-i----s~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~G 144 (215)
..++ ++.+-.-+.|+|+++. + ....--|.||-..|.|.|. ..-+-||++|+.-+++++. . ...+++|
T Consensus 67 ~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~VdG----e--r~~M~~G 138 (351)
T COG3435 67 AREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVDG----E--RTPMEAG 138 (351)
T ss_pred cccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEeccceeEeecC----c--eeeccCC
Confidence 3443 6677778889888773 1 1222347899999999998 7899999999999988853 3 7899999
Q ss_pred CEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 044045 145 DVFVFPIGLAHFQRNVGHGNAFSISALS 172 (215)
Q Consensus 145 Dv~~~P~G~~H~~~N~g~~~a~~l~~~~ 172 (215)
|.++-|++.-|..-|.|++|+.++-.++
T Consensus 139 DfilTP~w~wHdHgn~g~eP~iWlDgLD 166 (351)
T COG3435 139 DFILTPAWTWHDHGNEGTEPCIWLDGLD 166 (351)
T ss_pred CEEEccCceeccCCCCCCCceEEEcccc
Confidence 9999999999999999999999987664
No 48
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.87 E-value=3.4e-05 Score=54.08 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=44.2
Q ss_pred eEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEE
Q 044045 91 ASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQR 158 (215)
Q Consensus 91 is~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 158 (215)
++.......||... .++. ..|++|||+|++++... + +. ++++++||++++|+|..-.+.
T Consensus 7 ~~~g~w~~~pg~~~-~~~~--~~E~~~vleG~v~it~~--~--G~--~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 7 FSAGVWECTPGKFP-WPYP--EDEFFYVLEGEVTITDE--D--GE--TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEEECEEEE-EEES--SEEEEEEEEEEEEEEET--T--TE--EEEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEEECCceeE-eeCC--CCEEEEEEEeEEEEEEC--C--CC--EEEEcCCcEEEECCCCEEEEE
Confidence 55666777887532 3333 49999999999999864 2 44 799999999999999866654
No 49
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.78 E-value=5.1e-05 Score=65.01 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=46.5
Q ss_pred CCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCC
Q 044045 100 PWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVG 161 (215)
Q Consensus 100 pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g 161 (215)
+....++|||. ..|++||++|++++.+. ++ .+.+++||++++|+|..|.+....
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i~-----~~--~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVFN-----GQ--PYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEec-----CC--cccccCCcEEEECCCccchhhhcc
Confidence 44556899998 89999999999999886 33 799999999999999999887653
No 50
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.70 E-value=0.00016 Score=64.69 Aligned_cols=86 Identities=20% Similarity=0.099 Sum_probs=63.7
Q ss_pred CceEEEeecccCCC-CCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEc
Q 044045 72 GSRVTPVTVAQIPG-LNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFP 150 (215)
Q Consensus 72 g~~~~~~~~~~~P~-l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 150 (215)
|..+.-++..+-+. ..+++..+ ..+++|....+|.|. ...+++|++|+++..++ ++ +...++||++++|
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig-----~~--~~~W~~gD~f~vP 301 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRST-DATVFCVVEGRGQVRIG-----DA--VFRFSPKDVFVVP 301 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCcccc-ccEEEEEEeCeEEEEEC-----CE--EEEecCCCEEEEC
Confidence 44455566544443 34444444 348889899999998 79999999999999985 34 7999999999999
Q ss_pred CCCeEEEEeCCCCcEEEEE
Q 044045 151 IGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 151 ~G~~H~~~N~g~~~a~~l~ 169 (215)
+...|...|. +++.++.
T Consensus 302 sW~~~~h~a~--~da~Lf~ 318 (335)
T TIGR02272 302 SWHPVRFEAS--DDAVLFS 318 (335)
T ss_pred CCCcEecccC--CCeEEEE
Confidence 9988887774 4565544
No 51
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.61 E-value=0.00015 Score=57.85 Aligned_cols=68 Identities=22% Similarity=0.165 Sum_probs=46.9
Q ss_pred eEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEE
Q 044045 91 ASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISA 170 (215)
Q Consensus 91 is~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~ 170 (215)
++...++++.. +.-|.-.-+|+.||++|++++... ++ ++..++||+++||+|.--.+.-++ .++++-+
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~-----G~--~~~A~~GDvi~iPkGs~I~fst~~--~a~~~Yv 144 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID-----GQ--TVTAKPGDVIFIPKGSTITFSTPD--YARFFYV 144 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET-----TE--EEEEETT-EEEE-TT-EEEEEEEE--EEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC-----CE--EEEEcCCcEEEECCCCEEEEecCC--CEEEEEE
Confidence 55556666653 355776679999999999998753 55 899999999999999877775543 3555443
No 52
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.50 E-value=0.00029 Score=56.49 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=49.6
Q ss_pred CCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCC
Q 044045 104 IPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHG 163 (215)
Q Consensus 104 ~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 163 (215)
...|.|. -+|+-|+++|++.+-+-+.+ ++.+..-+++||.+++|+|+-|++.-..+.
T Consensus 86 fEEhlh~-deeiR~il~GtgYfDVrd~d--d~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 86 FEEHLHE-DEEIRYILEGTGYFDVRDKD--DQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred HHHhcCc-hhheEEEeecceEEeeccCC--CCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 3689999 69999999999999998775 677888999999999999999999765444
No 53
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.22 E-value=0.012 Score=47.99 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=57.9
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCC--Ce----eEEEEEcCCCEEEEcCCCeEEEEeCC-C
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPE--NR----LITKVLKKGDVFVFPIGLAHFQRNVG-H 162 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~--~~----~~~~~L~~GDv~~~P~G~~H~~~N~g-~ 162 (215)
.+++..+...||...+.|=|.++.=++.|++|+++-..-....+ .. .....+..|...+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 46788889999999999999877778999999987665443321 01 12345678888888999999999987 8
Q ss_pred CcEEEEEEEcCCC
Q 044045 163 GNAFSISALSSQN 175 (215)
Q Consensus 163 ~~a~~l~~~~s~~ 175 (215)
++++-+=+++...
T Consensus 154 ~~avSLHvYspPl 166 (175)
T PF05995_consen 154 EPAVSLHVYSPPL 166 (175)
T ss_dssp S-EEEEEEEES--
T ss_pred CCEEEEEEcCCCh
Confidence 8888887776543
No 54
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.003 Score=51.41 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCccCCCccCCCc-cEEEEEEeCEEEEEEEecCCC----CeeEEEEEcCC--CEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 100 PWGVIPPHVHPRA-TEILTVIEGSLDVGFVTSNPE----NRLITKVLKKG--DVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 100 pgg~~~pH~Hp~a-~E~~~Vl~G~~~~~~~~~~~~----~~~~~~~L~~G--Dv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
||-+..+|+|..- .+++.|++|++....++-..+ ++....+|.+- ..+.||+|..|.++|.+++..+++
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y 129 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVY 129 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEE
Confidence 8888899999877 899999999999888764321 34556777665 899999999999999998874433
No 55
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0044 Score=49.25 Aligned_cols=68 Identities=25% Similarity=0.258 Sum_probs=50.3
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEE
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 169 (215)
.+++..+++.+ ...+ |.-+-+|+-||++|++.+... ++ +...++||++++|+|.--.+.-.|. ++++-
T Consensus 99 ~l~aG~m~~~~-~tf~--wtl~yDe~d~VlEGrL~V~~~-----g~--tv~a~aGDvifiPKgssIefst~ge--a~fly 166 (176)
T COG4766 99 RLGAGLMEMKN-TTFP--WTLNYDEIDYVLEGRLHVRID-----GR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLY 166 (176)
T ss_pred ccccceeeecc-ccCc--ceecccceeEEEeeeEEEEEc-----CC--eEecCCCcEEEecCCCeEEEeccce--EEEEE
Confidence 34555566666 3333 344468999999999999886 44 7899999999999999877766554 55553
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.12 E-value=0.0054 Score=46.78 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=48.7
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeC
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNV 160 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~ 160 (215)
.+......-.|| ..+++-...|+.++|+|+++++-.+ ++ ...+++||+++||+|..=.+.-.
T Consensus 44 ~~~~GiWe~TpG---~~r~~y~~~E~chil~G~v~~T~d~----Ge--~v~~~aGD~~~~~~G~~g~W~V~ 105 (116)
T COG3450 44 QVETGIWECTPG---KFRVTYDEDEFCHILEGRVEVTPDG----GE--PVEVRAGDSFVFPAGFKGTWEVL 105 (116)
T ss_pred CeeEeEEEecCc---cceEEcccceEEEEEeeEEEEECCC----Ce--EEEEcCCCEEEECCCCeEEEEEe
Confidence 456667777888 4666656799999999999987532 44 89999999999999987766544
No 57
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.94 E-value=0.019 Score=46.99 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=54.5
Q ss_pred cCCccCCCccCC--CccEEEEEEeCEEEEEEEecCCC----CeeEEEEEcC--CCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 99 APWGVIPPHVHP--RATEILTVIEGSLDVGFVTSNPE----NRLITKVLKK--GDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 99 ~pgg~~~pH~Hp--~a~E~~~Vl~G~~~~~~~~~~~~----~~~~~~~L~~--GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
.+|.+..+|.|. ....+++|++|++...+++-..+ ++.....|.+ +..++||+|..|.+...+++ +.++
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~ 128 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFL 128 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEE
Confidence 567788899983 36899999999999888875321 4566778877 66999999999999999866 4444
No 58
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.75 E-value=0.02 Score=46.75 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=55.0
Q ss_pred cCCccCCCccCCCc---cEEEEEEeCEEEEEEEecCC----CCeeEEEEEcCCC--EEEEcCCCeEEEEeCCCCcEEEEE
Q 044045 99 APWGVIPPHVHPRA---TEILTVIEGSLDVGFVTSNP----ENRLITKVLKKGD--VFVFPIGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 99 ~pgg~~~pH~Hp~a---~E~~~Vl~G~~~~~~~~~~~----~~~~~~~~L~~GD--v~~~P~G~~H~~~N~g~~~a~~l~ 169 (215)
.+|.+..+|+|... ..++.|++|++...+++-.. =++.....|.+++ .++||+|..|.+...+++..+++-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 45778889998754 68999999999888886321 1567788897775 799999999999999876333333
Q ss_pred EEcCCCCce
Q 044045 170 ALSSQNPGV 178 (215)
Q Consensus 170 ~~~s~~pg~ 178 (215)
+-+.-+|+.
T Consensus 131 ~t~~y~p~~ 139 (176)
T PF00908_consen 131 VTNYYDPED 139 (176)
T ss_dssp ESS---GGG
T ss_pred cCCccCccc
Confidence 322334543
No 59
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.69 E-value=0.0061 Score=53.50 Aligned_cols=64 Identities=27% Similarity=0.165 Sum_probs=55.2
Q ss_pred EcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEE
Q 044045 98 YAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISA 170 (215)
Q Consensus 98 l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~ 170 (215)
++||-...+|.|. .+-+..|.+|+....++ ++ ++..++||+|++|.-..|...|. .+++.+++.
T Consensus 268 L~~Gf~~~~~r~t-~s~iy~V~eGsg~~~Ig-----~~--rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 268 LPPGFHGKAHRHT-DSTIYHVVEGSGYTIIG-----GE--RFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred cCCcccCCceecc-CCEEEEEEecceeEEEC-----CE--EeeccCCCEEEccCcceeecccC-CcceEEEec
Confidence 7888888899888 67889999999999886 44 89999999999999999999985 677777753
No 60
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.34 E-value=0.025 Score=52.11 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=37.2
Q ss_pred cCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEE
Q 044045 108 VHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 108 ~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 169 (215)
.+.+++|++++-+|++++.-.- | ...+++||+++||+|+.+.+.-. ++++.+.
T Consensus 142 ~NaDGD~Li~~q~G~l~l~Te~----G---~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi 194 (424)
T PF04209_consen 142 RNADGDELIFPQQGSLRLETEF----G---RLDVRPGDYVVIPRGTRFRVELP--GPARGYI 194 (424)
T ss_dssp EESSEEEEEEEEES-EEEEETT----E---EEEE-TTEEEEE-TT--EEEE-S--SSEEEEE
T ss_pred EcCCCCEEEEEEECCEEEEecC----e---eEEEcCCeEEEECCeeEEEEEeC--CCceEEE
Confidence 4667999999999999987542 2 57899999999999999998776 4555553
No 61
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=96.10 E-value=0.037 Score=46.59 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=64.3
Q ss_pred CceEEEeecccCCCCCcCceEEEEEEEcCCccCCC-ccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEc
Q 044045 72 GSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPP-HVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFP 150 (215)
Q Consensus 72 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~p-H~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 150 (215)
|...+.++.++. .-++-+..+.++||+..|. -+|- -+-=+||++|+..+.+.. . -..+++||.+..-
T Consensus 167 g~~attv~P~d~----r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn~-----d--wv~V~aGD~mwm~ 234 (264)
T COG3257 167 GVIATTVLPKEL----RFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLNN-----N--WVPVEAGDYIWMG 234 (264)
T ss_pred CeEEEeeCcccc----CcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeecC-----c--eEEeecccEEEee
Confidence 444444443333 3467888999999999883 4554 334499999999998852 2 7899999999999
Q ss_pred CCCeEEEEeCCCCcEEEEE
Q 044045 151 IGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 151 ~G~~H~~~N~g~~~a~~l~ 169 (215)
+-.+.+....|....+.+.
T Consensus 235 A~cpQacyagG~g~frYLl 253 (264)
T COG3257 235 AYCPQACYAGGRGAFRYLL 253 (264)
T ss_pred ccChhhhccCCCCceEEEE
Confidence 9999999888887666654
No 62
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.94 E-value=0.05 Score=45.32 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=48.2
Q ss_pred EEEEEcC-CccCCCccCCCccEEEEEEeCEEEEEEEecCC---------------------------------CCeeEEE
Q 044045 94 ARIDYAP-WGVIPPHVHPRATEILTVIEGSLDVGFVTSNP---------------------------------ENRLITK 139 (215)
Q Consensus 94 ~~~~l~p-gg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~---------------------------------~~~~~~~ 139 (215)
..+-+.+ |...++|+.+ ..-++.+++|+=++.+..+.. ..+..+.
T Consensus 133 ~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~ 211 (251)
T PF13621_consen 133 SNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEV 211 (251)
T ss_dssp EEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEE
T ss_pred cEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEE
Confidence 3455555 5577899987 688999999998888876530 0135689
Q ss_pred EEcCCCEEEEcCCCeEEEEeCCCC
Q 044045 140 VLKKGDVFVFPIGLAHFQRNVGHG 163 (215)
Q Consensus 140 ~L~~GDv~~~P~G~~H~~~N~g~~ 163 (215)
+|++||+++||+|..|..+|..++
T Consensus 212 ~l~pGD~LfiP~gWwH~V~~~~~~ 235 (251)
T PF13621_consen 212 VLEPGDVLFIPPGWWHQVENLSDD 235 (251)
T ss_dssp EEETT-EEEE-TT-EEEEEESTTS
T ss_pred EECCCeEEEECCCCeEEEEEcCCC
Confidence 999999999999999999999433
No 63
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.80 E-value=0.089 Score=48.58 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=43.6
Q ss_pred CccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEE
Q 044045 106 PHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 106 pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 169 (215)
.-.+.+++|++++-+|++.+.-.- | ...+++||+++||+|+.+.+.-. +++++.+.
T Consensus 148 ~f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l~-~gp~rgyi 203 (438)
T PRK05341 148 YFYNADGELLIVPQQGRLRLATEL----G---VLDVEPGEIAVIPRGVKFRVELP-DGPARGYV 203 (438)
T ss_pred eeecCCCCEEEEEEeCCEEEEEec----c---ceEecCCCEEEEcCccEEEEecC-CCCeeEEE
Confidence 344677999999999999987643 2 58999999999999999988743 34555543
No 64
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.79 E-value=0.048 Score=40.96 Aligned_cols=62 Identities=29% Similarity=0.377 Sum_probs=46.0
Q ss_pred CccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCC--CeEEEEeCCC-CcEEEE
Q 044045 101 WGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIG--LAHFQRNVGH-GNAFSI 168 (215)
Q Consensus 101 gg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G--~~H~~~N~g~-~~a~~l 168 (215)
+...++|-|.+-+-+.||++|+++.. |+. +. ..+|++||+-+.-+| +.|...|.++ +++..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~--G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSL--GN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETT--SE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCC--CC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 45568999996666789999998765 443 33 678999999888765 8999999987 677665
No 65
>PF12852 Cupin_6: Cupin
Probab=95.79 E-value=0.024 Score=46.01 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=36.9
Q ss_pred ccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCC
Q 044045 112 ATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVG 161 (215)
Q Consensus 112 a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g 161 (215)
..-+.+|++|+.++.+.+. +. ...|++||++++|+|..|.+....
T Consensus 35 ~~~fh~V~~G~~~l~~~~~---~~--~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPGG---GE--PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred ceEEEEEECCeEEEEEcCC---CC--eEEecCCCEEEEcCCCCeEeCCCC
Confidence 3678999999999997642 22 799999999999999999995433
No 66
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.78 E-value=0.094 Score=48.32 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=43.3
Q ss_pred CccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 106 PHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 106 pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
.-.+.+++|++++-+|++.+...- | ...+++||+++||+|+.+.+.-.+ +++.+
T Consensus 142 ~f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l~g--p~rgy 195 (429)
T TIGR01015 142 AFYNADGDFLIVPQQGALLITTEF----G---RLLVEPNEICVIPRGVRFRVTVLE--PARGY 195 (429)
T ss_pred eeeccCCCEEEEEEeCcEEEEEec----c---ceEecCCCEEEecCccEEEEeeCC--CceEE
Confidence 344667999999999999987643 2 589999999999999999997665 44444
No 67
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.77 E-value=0.043 Score=47.38 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=39.5
Q ss_pred CccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 044045 106 PHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGH 162 (215)
Q Consensus 106 pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 162 (215)
||-+. +-++.++++|++.+... ++ .+.+++||++++|+|.+|.+....+
T Consensus 44 ~~~~~-~~~i~~~~~G~~~~~~~-----~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGMK-GYILNLTIRGQGVIFNG-----GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCcc-ceEEEEEEeccEEEecC-----Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 44444 67889999999998764 34 7999999999999999998766443
No 68
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.70 E-value=0.08 Score=44.68 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=45.8
Q ss_pred EEEcCCccCCCccCCCccEEEEEEe-CEEEEEEEecCC--------------CCeeE------EEEEcCCCEEEEcCCCe
Q 044045 96 IDYAPWGVIPPHVHPRATEILTVIE-GSLDVGFVTSNP--------------ENRLI------TKVLKKGDVFVFPIGLA 154 (215)
Q Consensus 96 ~~l~pgg~~~pH~Hp~a~E~~~Vl~-G~~~~~~~~~~~--------------~~~~~------~~~L~~GDv~~~P~G~~ 154 (215)
+.+.+|...|.|.|..-.|=++.-- |.+.+++..++. +|..+ ..+|+||+.+-+++|+-
T Consensus 92 m~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~y 171 (225)
T PF07385_consen 92 MIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIY 171 (225)
T ss_dssp EEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEE
T ss_pred eeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCe
Confidence 5678999999999987788666664 677777665431 12211 57899999999999999
Q ss_pred EEEEeCCCCcEEEEEEEc
Q 044045 155 HFQRNVGHGNAFSISALS 172 (215)
Q Consensus 155 H~~~N~g~~~a~~l~~~~ 172 (215)
|+++..+.. +++.=++
T Consensus 172 H~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 172 HWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp EEEEE-TTS--EEEEEEE
T ss_pred eeEEecCCC--EEEEeee
Confidence 999986554 5554333
No 69
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.45 E-value=0.14 Score=47.23 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=42.6
Q ss_pred ccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 107 HVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 107 H~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
-.+.+++|++++-+|++.+.-.- | ...+++||+++||+|+.+.+.-. +++++.+
T Consensus 142 f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l~-~gp~rgy 195 (435)
T PLN02658 142 FCNADGDFLIVPQQGRLWIKTEL----G---KLQVSPGEIVVIPRGFRFAVDLP-DGPSRGY 195 (435)
T ss_pred eecCCCCEEEEEEeCCEEEEEec----c---ceEecCCCEEEecCccEEEEecC-CCCeeEE
Confidence 45677999999999999987643 2 58899999999999999888643 3455554
No 70
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.37 E-value=0.01 Score=51.18 Aligned_cols=73 Identities=18% Similarity=0.082 Sum_probs=42.9
Q ss_pred EEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 044045 93 LARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALS 172 (215)
Q Consensus 93 ~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~ 172 (215)
-..+.++.|-...+|+|+ ..|-.||++|++.++.... .+ ...|.+|-.+.-|.+..|... .++++++++.-.+
T Consensus 173 gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~---~~--~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRtd 245 (251)
T PF14499_consen 173 GLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGA---SN--FGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRTD 245 (251)
T ss_dssp EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEE---ET--TEEEEE-TT-EE--E-------EESS-EEEEEEES
T ss_pred eEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeeccc---CC--CccccCCcccccCCccccccc-ccCCCEEEEEEEC
Confidence 445566777677899999 7889999999999966432 12 689999999999999999998 6788888886544
No 71
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=95.36 E-value=0.07 Score=44.52 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=45.0
Q ss_pred EEEEEEcCCccCCCccCCCc--cEEEEEE--eCEEEEEEEecCC-----------C-----CeeEEEEEcCCCEEEEcCC
Q 044045 93 LARIDYAPWGVIPPHVHPRA--TEILTVI--EGSLDVGFVTSNP-----------E-----NRLITKVLKKGDVFVFPIG 152 (215)
Q Consensus 93 ~~~~~l~pgg~~~pH~Hp~a--~E~~~Vl--~G~~~~~~~~~~~-----------~-----~~~~~~~L~~GDv~~~P~G 152 (215)
+....+.+|+....|.|+++ +=+.||- +|...+.|.++.. + .......-++|++++||+-
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~ 177 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW 177 (201)
T ss_pred EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence 33445789999999999965 2234444 2222222222110 0 0011234489999999999
Q ss_pred CeEEEEeCCCCcEEEEEEEc
Q 044045 153 LAHFQRNVGHGNAFSISALS 172 (215)
Q Consensus 153 ~~H~~~N~g~~~a~~l~~~~ 172 (215)
+.|...-...+.-++-.+||
T Consensus 178 L~H~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 178 LRHEVPPNESEEERISVSFN 197 (201)
T ss_pred CceecCCCCCCCCEEEEEEe
Confidence 99998643333334444454
No 72
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=95.31 E-value=0.026 Score=47.27 Aligned_cols=59 Identities=15% Similarity=0.385 Sum_probs=49.3
Q ss_pred cCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCC
Q 044045 99 APWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVG 161 (215)
Q Consensus 99 ~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g 161 (215)
.|+.....|..+ +.|++|-.+|...+-+.+. ++.+...++.||++..|+.++|+-+--.
T Consensus 41 GPN~RkdyHiee-geE~FyQ~KGdMvLKVie~---g~~rDivI~qGe~flLParVpHSPqRFa 99 (279)
T KOG3995|consen 41 GPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ---GKHRDVVIRQGEIFLLPARVPHSPQRFA 99 (279)
T ss_pred CCCcccccccCC-cchhheeecCceEEeeecc---CcceeeEEecCcEEEeccCCCCChhhhc
Confidence 455556678888 8999999999999999876 5667899999999999999999854433
No 73
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.21 E-value=0.075 Score=38.97 Aligned_cols=76 Identities=22% Similarity=0.206 Sum_probs=34.8
Q ss_pred EEEcCCccCCCccCCCcc--EEEEEE--eCEEEEEEEecCC----------------CCeeEEEEEcCCCEEEEcCCCeE
Q 044045 96 IDYAPWGVIPPHVHPRAT--EILTVI--EGSLDVGFVTSNP----------------ENRLITKVLKKGDVFVFPIGLAH 155 (215)
Q Consensus 96 ~~l~pgg~~~pH~Hp~a~--E~~~Vl--~G~~~~~~~~~~~----------------~~~~~~~~L~~GDv~~~P~G~~H 155 (215)
....+|+...+|.|+++. =+.||- ++...+.+.+++. .........++||+++||+-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 346789999999999642 233332 2222333333211 12234678899999999999999
Q ss_pred EEEeCCCCcEEEEEEE
Q 044045 156 FQRNVGHGNAFSISAL 171 (215)
Q Consensus 156 ~~~N~g~~~a~~l~~~ 171 (215)
...-...+.-++..+|
T Consensus 85 ~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 85 GVPPNNSDEERISISF 100 (101)
T ss_dssp EE----SSS-EEEEEE
T ss_pred eccCcCCCCCEEEEEc
Confidence 9864333333443344
No 74
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.16 E-value=0.27 Score=43.69 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=43.7
Q ss_pred EEEEEcCCc--cCCCccCCCccEEEEEEeCEEEEEEEecCC--------------C--CeeEEEEEcCCCEEEEcCCCeE
Q 044045 94 ARIDYAPWG--VIPPHVHPRATEILTVIEGSLDVGFVTSNP--------------E--NRLITKVLKKGDVFVFPIGLAH 155 (215)
Q Consensus 94 ~~~~l~pgg--~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~--------------~--~~~~~~~L~~GDv~~~P~G~~H 155 (215)
+.+-+.|++ ...||+=. .+-+++=++|+=+..+..... + ......+|++||++++|+|..|
T Consensus 116 ~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H 194 (319)
T PF08007_consen 116 ANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWH 194 (319)
T ss_dssp EEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EE
T ss_pred eEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccC
Confidence 334467776 77899866 566777788987777665210 0 1245799999999999999999
Q ss_pred EEEeCC
Q 044045 156 FQRNVG 161 (215)
Q Consensus 156 ~~~N~g 161 (215)
.....+
T Consensus 195 ~~~~~~ 200 (319)
T PF08007_consen 195 QAVTTD 200 (319)
T ss_dssp EEEESS
T ss_pred CCCCCC
Confidence 999988
No 75
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=95.11 E-value=0.11 Score=43.07 Aligned_cols=89 Identities=24% Similarity=0.294 Sum_probs=68.5
Q ss_pred CCCCCceEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEE
Q 044045 68 SNPLGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVF 147 (215)
Q Consensus 68 ~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 147 (215)
+...|+.+..+.... .-..+++++.+.||...|-|+|- +-|.+.|++|... +++ -.+.+||..
T Consensus 110 W~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~s----de~-------G~y~vgD~~ 172 (216)
T COG3806 110 WLGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAFS----DEN-------GEYLVGDFT 172 (216)
T ss_pred eecCCcceeecccCC-----CCCceeEEEEeccCccccccccc-ceEEEEEEeeccc----cCC-------CccccCcee
Confidence 345566665554333 22567999999999999999998 8999999999754 443 367899999
Q ss_pred EEcCCCeEEEEeCCCCcEEEEEEEcC
Q 044045 148 VFPIGLAHFQRNVGHGNAFSISALSS 173 (215)
Q Consensus 148 ~~P~G~~H~~~N~g~~~a~~l~~~~s 173 (215)
.-+.++-|.-.-..+.+|..++++..
T Consensus 173 ~~d~~v~H~piv~~~~eClcl~al~~ 198 (216)
T COG3806 173 LADGTVQHSPIVLPPGECLCLAALDG 198 (216)
T ss_pred ecCCccccccccCCCCCceEEEEcCC
Confidence 99999999976667788888887764
No 76
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=94.89 E-value=0.14 Score=42.25 Aligned_cols=78 Identities=24% Similarity=0.238 Sum_probs=48.6
Q ss_pred EEEEcCCccCCCccCCCccEEEEEE-eCEEEEEEEecC---C-----------CCeeE------EEEEcCCCEEEEcCCC
Q 044045 95 RIDYAPWGVIPPHVHPRATEILTVI-EGSLDVGFVTSN---P-----------ENRLI------TKVLKKGDVFVFPIGL 153 (215)
Q Consensus 95 ~~~l~pgg~~~pH~Hp~a~E~~~Vl-~G~~~~~~~~~~---~-----------~~~~~------~~~L~~GDv~~~P~G~ 153 (215)
.+.+.+|...|+|.|.+..|=++=- .|++.+.+...+ + +++.. ...|+||+.+-+|+|+
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 3567899999999998655532222 233444333221 0 11111 4689999999999999
Q ss_pred eEEEEeCCCCcEEEEEEEcCC
Q 044045 154 AHFQRNVGHGNAFSISALSSQ 174 (215)
Q Consensus 154 ~H~~~N~g~~~a~~l~~~~s~ 174 (215)
-|+++.-+.. +++.-.++-
T Consensus 170 ~HsFwae~g~--vlvgEvSsv 188 (225)
T COG3822 170 YHSFWAEEGG--VLVGEVSSV 188 (225)
T ss_pred eeeeeecCCc--EEEEEEeec
Confidence 9999986544 444434443
No 77
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=94.83 E-value=0.19 Score=43.90 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=56.3
Q ss_pred ceEEEEEEEcCCc---cCCCccCCCccEEEE-E--EeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCC
Q 044045 90 GASLARIDYAPWG---VIPPHVHPRATEILT-V--IEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHG 163 (215)
Q Consensus 90 gis~~~~~l~pgg---~~~pH~Hp~a~E~~~-V--l~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 163 (215)
.+-+....+.||+ ..|||.|++..|..+ - -++.-.+.+.++- +..+...++-+|+++.|+-.+|.-. |..
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~p--dETrh~~v~n~~aVisP~wsih~g~--gt~ 249 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEP--QETRHIVVHNEQAVISPSWSIHSGV--GTS 249 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCc--cceeeEEEECCCEEECCCcceecCc--Ccc
Confidence 4667777789998 358999997777433 2 2333333433221 3323489999999999999999874 566
Q ss_pred cEEEEEEEcCCC
Q 044045 164 NAFSISALSSQN 175 (215)
Q Consensus 164 ~a~~l~~~~s~~ 175 (215)
.-.||+....+|
T Consensus 250 ~y~fiw~m~gen 261 (276)
T PRK00924 250 NYTFIWGMAGEN 261 (276)
T ss_pred ccEEEEEecccC
Confidence 778888876655
No 78
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=94.76 E-value=0.26 Score=42.65 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=47.0
Q ss_pred ceEEEEEEEcCCccCC-----CccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCC
Q 044045 90 GASLARIDYAPWGVIP-----PHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHG 163 (215)
Q Consensus 90 gis~~~~~l~pgg~~~-----pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 163 (215)
++.+.++...+..+.. .|.+.+.-.++++++|++.+... ++ ...+++||+++++++.+|.+.-.++.
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~-----g~--~~~l~~G~~~l~~~~~p~~~~~~~~~ 115 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQD-----DR--QVQLAAGDITLIDASRPCSIYPQGLS 115 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEEC-----Ce--EEEEcCCCEEEEECCCCcEeecCCCc
Confidence 4566666666553321 23334345577889999998774 44 78999999999999999988655443
No 79
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.52 E-value=0.14 Score=44.72 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=51.9
Q ss_pred EEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCC--CeEEEEeC--CCCcEEEE
Q 044045 95 RIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIG--LAHFQRNV--GHGNAFSI 168 (215)
Q Consensus 95 ~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G--~~H~~~N~--g~~~a~~l 168 (215)
...+.||.-.+||-|.+=+-+.||++|+++.. |+. +. ...+++||+-..-+| ..|.-.|. .+.+...+
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~--Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~ 119 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSL--GN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGL 119 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecC--Cc--eeeecccceeEEcCCCceeecccCCccCCCcccee
Confidence 34588999999999996555689999998876 333 23 689999999988875 79999987 33355555
No 80
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.36 E-value=0.23 Score=43.15 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=48.3
Q ss_pred cCCccCCCccC-CCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCC-CEEEEcCCCeEEEEeCCC
Q 044045 99 APWGVIPPHVH-PRATEILTVIEGSLDVGFVTSNPENRLITKVLKKG-DVFVFPIGLAHFQRNVGH 162 (215)
Q Consensus 99 ~pgg~~~pH~H-p~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~G-Dv~~~P~G~~H~~~N~g~ 162 (215)
-|++...+|.| ++..|.+.|++|++.+.+.++++ .......+.+. +.-++|++.-|.+...++
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g-~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~ 83 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDG-EELSEHIFDAENQPPFIEPQAWHRIEAASD 83 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCC-CeeeEEEEecCCCCceeCCcceEEEEEcCC
Confidence 47778889998 67789999999999998887653 23345566664 565799999999987643
No 81
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.29 E-value=0.64 Score=41.96 Aligned_cols=71 Identities=11% Similarity=0.051 Sum_probs=50.0
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
|+.+....+..+-....-+..+++|++++-+|++++...- | ..++++||+.+||+|+....+-.+.+ ++.+
T Consensus 124 g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~----G---~l~v~pgeiavIPRG~~frve~~~~~-~rgy 194 (427)
T COG3508 124 GVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTEL----G---VLEVEPGEIAVIPRGTTFRVELKDGE-ARGY 194 (427)
T ss_pred ceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEee----c---eEEecCCcEEEeeCCceEEEEecCCc-eEEE
Confidence 4444443343332224455777999999999999886542 1 68999999999999999998876554 4443
No 82
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.97 E-value=0.12 Score=38.05 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCEEEEcCCCeEEEEeCCCC
Q 044045 135 RLITKVLKKGDVFVFPIGLAHFQRNVGHG 163 (215)
Q Consensus 135 ~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 163 (215)
+.++.+-++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 45688899999999999999999999964
No 83
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.92 E-value=0.36 Score=38.67 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=43.2
Q ss_pred EEEEEEEcCCccCCCccCCCccE----EEEEE-eCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEE
Q 044045 92 SLARIDYAPWGVIPPHVHPRATE----ILTVI-EGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAF 166 (215)
Q Consensus 92 s~~~~~l~pgg~~~pH~Hp~a~E----~~~Vl-~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~ 166 (215)
.+....+.||+.+.||.-+.... +-+++ .+...+.+. ++ ++..++|++++|.-...|...|.|+++-+
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~-----~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv 153 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG-----GE--TRHWREGECWVFDDSFEHEVWNNGDEDRV 153 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET-----TE--EEB--CTEEEEE-TTS-EEEEESSSS-EE
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC-----Ce--EEEeccCcEEEEeCCEEEEEEeCCCCCEE
Confidence 34445689999999998653222 22333 244555543 34 78889999999999999999999987654
Q ss_pred EE
Q 044045 167 SI 168 (215)
Q Consensus 167 ~l 168 (215)
.+
T Consensus 154 ~L 155 (163)
T PF05118_consen 154 VL 155 (163)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 84
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=93.76 E-value=0.3 Score=36.07 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=44.6
Q ss_pred EEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 044045 94 ARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISAL 171 (215)
Q Consensus 94 ~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~ 171 (215)
..+.++||+.......+...-++||++|++.+. +. ...+.+|+++++..|..-.+.+.+ +.++++..-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-------~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-------GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-------TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-------CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence 457788988654333333456899999998762 22 368999999999977776777654 677777543
No 85
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=93.55 E-value=0.98 Score=33.17 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=44.0
Q ss_pred EEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEE
Q 044045 95 RIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISA 170 (215)
Q Consensus 95 ~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~ 170 (215)
.-.+.||. .+....+.|+.-|++|++++.+.++ .. .+++++|+.+.+|++.--.++.. ++...++.
T Consensus 27 lGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~---~e--w~~~~aGesF~VpanssF~v~v~--~~~~Y~C~ 92 (94)
T PF06865_consen 27 LGVMLPGE---YTFGTSAPERMEVVSGELEVKLPGE---DE--WQTYSAGESFEVPANSSFDVKVK--EPTAYLCS 92 (94)
T ss_dssp EEEE-SEC---EEEEESS-EEEEEEESEEEEEETT----SS---EEEETT-EEEE-TTEEEEEEES--S-EEEEEE
T ss_pred EEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCC---cc--cEEeCCCCeEEECCCCeEEEEEC--cceeeEEE
Confidence 34467774 4444457899999999999999754 23 78999999999999998887764 34455543
No 86
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=93.45 E-value=0.39 Score=38.75 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=47.7
Q ss_pred eEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEE---ecC---CCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCc
Q 044045 91 ASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFV---TSN---PENRLITKVLKKGDVFVFPIGLAHFQRNVGHGN 164 (215)
Q Consensus 91 is~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~---~~~---~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~ 164 (215)
+++..+++.||...|+|-|- ..-++=|+.|.=+-.+- .+. ++++ .+.+.+|++-.-| |.+|.+.|.+...
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~q--dk~~apgeV~lSp-gdihsv~n~~sdr 148 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPERQ--DKFAAPGEVHLSP-GDIHSVANTGSDR 148 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcchh--hhhcCcceEeeCC-CCeeeecccCCCc
Confidence 57899999999999999997 67788888886332221 110 1122 3456666666333 6666666666554
Q ss_pred EEEEEEE
Q 044045 165 AFSISAL 171 (215)
Q Consensus 165 a~~l~~~ 171 (215)
...|-++
T Consensus 149 s~aiHvy 155 (191)
T COG5553 149 SGAIHVY 155 (191)
T ss_pred cceEEEE
Confidence 4333333
No 87
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=93.34 E-value=0.36 Score=32.68 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=41.8
Q ss_pred EEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEe
Q 044045 96 IDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRN 159 (215)
Q Consensus 96 ~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 159 (215)
..+.||....++... +.+ +.|.+|++.++.... ...+.|++||.+.+++|..-++..
T Consensus 2 ~~L~~g~~~~lr~~~-~~~-l~v~~G~vWlT~~g~-----~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA-GQR-LRVESGRVWLTREGD-----PDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC-CcE-EEEccccEEEECCCC-----CCCEEECCCCEEEeCCCCEEEEEe
Confidence 346777766665443 334 999999999987532 237999999999999997766554
No 88
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=93.02 E-value=0.54 Score=39.21 Aligned_cols=86 Identities=23% Similarity=0.264 Sum_probs=60.3
Q ss_pred CcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCC---C-----CeeEEEE------E-cCCC-EEEEc
Q 044045 87 NTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNP---E-----NRLITKV------L-KKGD-VFVFP 150 (215)
Q Consensus 87 ~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~---~-----~~~~~~~------L-~~GD-v~~~P 150 (215)
....+++...-|+||..+|+|=||+-+-+.-|+.|++.+.--+--. + .+..... + .+++ .+..|
T Consensus 40 E~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P 119 (200)
T PF07847_consen 40 EDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYP 119 (200)
T ss_pred ECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEcc
Confidence 3446788888999999999999998788888999999986543210 0 0111111 2 2223 55566
Q ss_pred C--CCeEEEEeCCCCcEEEEEEEcC
Q 044045 151 I--GLAHFQRNVGHGNAFSISALSS 173 (215)
Q Consensus 151 ~--G~~H~~~N~g~~~a~~l~~~~s 173 (215)
. |-+|.+.+.+ +++.++-++..
T Consensus 120 ~~ggNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 120 TSGGNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred CCCCeeEEEEeCC-CCeEEEEEccC
Confidence 5 4899999987 88999988854
No 89
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=92.88 E-value=1.4 Score=31.52 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=44.0
Q ss_pred CCccCCCccC-CCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCC
Q 044045 100 PWGVIPPHVH-PRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHG 163 (215)
Q Consensus 100 pgg~~~pH~H-p~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 163 (215)
|.++...|.- .+.-..+.|++|++.+...+++++--.....+.+|+..+|++...|.+.-.++.
T Consensus 12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D 76 (82)
T PF09313_consen 12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDD 76 (82)
T ss_dssp -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence 3345556643 333456999999999998876431112467889999999999999999988763
No 90
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=92.79 E-value=1.7 Score=33.69 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=44.3
Q ss_pred eEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCc
Q 044045 91 ASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGN 164 (215)
Q Consensus 91 is~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~ 164 (215)
+.+.++.....-.....-+.+.--+.+.++|...+... ++ ...+.+||+++++.+.++.+...++..
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~-----g~--~~~~~pg~~~l~d~~~~~~~~~~~~~~ 100 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQG-----GR--EVELAPGDVVLLDPGQPYRLEFSAGCR 100 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEEC-----CE--EEEEcCCeEEEEcCCCCEEEEECCCcc
Confidence 55666655533322211122244567777899888764 44 899999999999999999987664433
No 91
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.30 E-value=0.094 Score=48.91 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=43.9
Q ss_pred cCCc-cCCCccCCCccEEEEEEeCEEEEEEEecCC------------------CCeeEEEEEcCCCEEEEcCCCeEEEEe
Q 044045 99 APWG-VIPPHVHPRATEILTVIEGSLDVGFVTSNP------------------ENRLITKVLKKGDVFVFPIGLAHFQRN 159 (215)
Q Consensus 99 ~pgg-~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~------------------~~~~~~~~L~~GDv~~~P~G~~H~~~N 159 (215)
+||+ ..+|||-. -+-+++-++|+=...+-.+.. ..-+....|++||+++||+|.+|....
T Consensus 325 PagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 4554 57899987 466777889986655543320 012456899999999999999998865
Q ss_pred CC
Q 044045 160 VG 161 (215)
Q Consensus 160 ~g 161 (215)
..
T Consensus 404 ~~ 405 (629)
T KOG3706|consen 404 PA 405 (629)
T ss_pred cc
Confidence 43
No 92
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=92.18 E-value=0.94 Score=41.51 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=42.6
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEE
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQR 158 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 158 (215)
.+.+.++++..+.. +....+.++++|++|++++... +. +..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~~-----~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWKG-----EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceE---EecCCCcEEEEEEcceEEEEeC-----Ce--EEEECCCCEEEEeCCCccEEE
Confidence 46677777765422 2222467999999999998642 33 688999999999998776655
No 93
>PRK10579 hypothetical protein; Provisional
Probab=91.82 E-value=2.7 Score=30.86 Aligned_cols=63 Identities=21% Similarity=0.149 Sum_probs=46.7
Q ss_pred EEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEE
Q 044045 97 DYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 97 ~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 169 (215)
.+.||. .+.-..+.|+.-|++|++++.+.+++ ..+++++|+.+.+|++.--.++.. +....++
T Consensus 29 Vm~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~-----ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C 91 (94)
T PRK10579 29 VMAEGE---YTFSTAEPEEMTVISGALNVLLPGAT-----DWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLC 91 (94)
T ss_pred EEeeeE---EEEcCCCcEEEEEEeeEEEEECCCCc-----ccEEeCCCCEEEECCCCeEEEEEC--cceeeEE
Confidence 366664 33444478999999999999997542 378999999999999998777664 3344444
No 94
>PLN02288 mannose-6-phosphate isomerase
Probab=91.53 E-value=0.66 Score=42.62 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=41.0
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCC
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGL 153 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~ 153 (215)
.+++.++++.+|.......+. +.++++|++|++++... +...+..|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~~-gp~Illv~~G~~~i~~~-----~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAVP-GPSVFLVIEGEGVLSTG-----SSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCCC-CCEEEEEEcCEEEEecC-----CccceEEEeceeEEEEeCCC
Confidence 577888888877532222133 68999999999998542 22113679999999999864
No 95
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=91.26 E-value=1.5 Score=38.52 Aligned_cols=60 Identities=28% Similarity=0.266 Sum_probs=43.1
Q ss_pred CceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEE
Q 044045 89 LGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQR 158 (215)
Q Consensus 89 ~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 158 (215)
..+.+.++++..... ...+ .+..+++|++|++++... +. +..|++|+.+++|++......
T Consensus 233 ~~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~~-----~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 233 EYFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKSG-----GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEEC-----CE--EEEEecccEEEEccCCccEEE
Confidence 357778888764321 1123 367899999999998642 33 688999999999999866554
No 96
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.93 E-value=1.3 Score=40.17 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=50.7
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
.+++.++++++|...-.-.-+ +.-++.|++|++++..... . ...+++||+++||+...-.+.. .+++...+
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t~----~--~~~v~rG~V~fI~a~~~i~~~~-~sd~~~~y 402 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDTD----S--KILVNRGDVLFIPANHPIHLSS-SSDPFLGY 402 (411)
T ss_pred ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCCC----C--ceeeccCcEEEEcCCCCceeec-cCcceeee
Confidence 577888888887653333344 6789999999999986532 2 6899999999999998765543 33444333
No 97
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=89.81 E-value=3.4 Score=34.44 Aligned_cols=77 Identities=21% Similarity=0.151 Sum_probs=49.3
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
+.......+++|...-..-.+ ...+.+|++|.+.+...+++| .+.....+.+||++-+..+.++.....--++++++
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G-~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~ 111 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDG-RRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR 111 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCC-cEEEEEEecCCceecccCCCcCCeEEEEcCceEEE
Confidence 445666778888765433233 678899999999998876664 33445567899998766554443322223344444
No 98
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=89.50 E-value=3.7 Score=33.22 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=38.1
Q ss_pred EEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEE
Q 044045 94 ARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVF 149 (215)
Q Consensus 94 ~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 149 (215)
....+++|...-..-.+ ...+.+|++|.+.+...+.+| ++.....+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEEee
Confidence 45568888765433234 678999999999998766553 3444567899999843
No 99
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=88.59 E-value=7.4 Score=33.73 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=50.8
Q ss_pred ceEEEeecccCCCCCcCceEEEEEEEcCCc---cCCCccCCCc--------cEEEEEE-e---CEEEEEEEecCCCCeeE
Q 044045 73 SRVTPVTVAQIPGLNTLGASLARIDYAPWG---VIPPHVHPRA--------TEILTVI-E---GSLDVGFVTSNPENRLI 137 (215)
Q Consensus 73 ~~~~~~~~~~~P~l~~~gis~~~~~l~pgg---~~~pH~Hp~a--------~E~~~Vl-~---G~~~~~~~~~~~~~~~~ 137 (215)
-.|...-..+.+.. ..+-+..+. .|+| ..|||.|++. +|+.|-. . |-+...+-..++ ..-+
T Consensus 135 R~V~~~i~~~~~~~--~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~-~~d~ 210 (261)
T PF04962_consen 135 RTVRNIIDPNVPPA--SRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDP-QLDE 210 (261)
T ss_dssp EEEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTS-SSEE
T ss_pred EEEEEeeCCCCccc--ceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCC-CCcE
Confidence 34555555555422 245566655 5554 3589999962 4554442 2 333322222211 1124
Q ss_pred EEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEEcCCC
Q 044045 138 TKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQN 175 (215)
Q Consensus 138 ~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~ 175 (215)
...++-||++.+|.|. |.+...-.....+++++...+
T Consensus 211 ~~~V~~~d~V~iP~gy-Hp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 211 HYVVRNGDAVLIPSGY-HPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEEEETTEEEEESTTB--SEEEEEESSEEEEEEEESSS
T ss_pred EEEEECCCEEEeCCCC-CCcCcCCCcCcEEEEEEEcCC
Confidence 7899999999999993 344332233455888887666
No 100
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=86.58 E-value=2.3 Score=28.94 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=32.9
Q ss_pred EEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCe-eEEEEEcCCCEE
Q 044045 97 DYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENR-LITKVLKKGDVF 147 (215)
Q Consensus 97 ~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~-~~~~~L~~GDv~ 147 (215)
.+.+|...-.. +.....+.+|++|.+.+.....+ ++ .....+.+||++
T Consensus 3 ~~~~g~~i~~~-g~~~~~~~~i~~G~v~~~~~~~~--~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQ-GDPCDHIYIILSGEVKVSSINED--GKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEET-TSBESEEEEEEESEEEEEEETTT--SEEEEEEEEETTEEE
T ss_pred EECCCCEEEeC-CCcCCEEEEEEECceEEEeceec--ceeeeecceeeeccc
Confidence 45666544222 22268999999999999988765 33 235688888887
No 101
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=85.09 E-value=2.1 Score=36.14 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=59.2
Q ss_pred CCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCce--eeechhhh
Q 044045 109 HPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGV--ITIANAVF 186 (215)
Q Consensus 109 Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~--~~~~~~lf 186 (215)
|. ++...+|++|+...... ++....+.++||..+.|+|.....+-.. .+-++..-..--|-. +-+++.+|
T Consensus 117 h~-ad~y~tIL~G~~~~~~~-----g~~~~evy~pGd~~~l~rg~a~~y~m~~--~tw~LEY~RG~IP~~lpf~~~dt~~ 188 (216)
T PF04622_consen 117 HW-ADDYFTILSGEQWAWSP-----GSLEPEVYKPGDSHHLPRGEAKQYQMPP--GTWALEYGRGWIPSMLPFGFADTLF 188 (216)
T ss_pred eE-eeeEEEEEEEEEEEEcC-----CCCCceEeccCCEEEecCceEEEEEeCC--CeEEEEecCCchhhhhHHHHHHHHH
Confidence 44 77899999999887653 4445789999999999999998887653 344443222223322 23446777
Q ss_pred cCCCCCCHHHHHHHcCCCHHH
Q 044045 187 GSNPSIADDLLAKAFQLDKSV 207 (215)
Q Consensus 187 ~~~p~~p~~vl~~af~~~~~~ 207 (215)
++ ++-..+-++..+..++
T Consensus 189 sT---lDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 189 ST---LDFPTLYRTVYITARE 206 (216)
T ss_pred hc---cchHHHHHHHHHHHHH
Confidence 76 7777777776665543
No 102
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=84.80 E-value=1.3 Score=40.14 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=43.7
Q ss_pred EcCCccCCCccCCCccEEEEEEeCEEEEEEEecC-CC--------------CeeEEEEEcCCCEEEEcCCCeEEEEeCC
Q 044045 98 YAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSN-PE--------------NRLITKVLKKGDVFVFPIGLAHFQRNVG 161 (215)
Q Consensus 98 l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~-~~--------------~~~~~~~L~~GDv~~~P~G~~H~~~N~g 161 (215)
..+||...+|+-+ -+-+++=..|+=+..+.... .. .-....+|+|||++++|+|.+|+-...+
T Consensus 126 a~~GGgvg~H~D~-YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~ 203 (383)
T COG2850 126 AAPGGGVGPHFDQ-YDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAED 203 (383)
T ss_pred ecCCCccCccccc-hheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccc
Confidence 5789999999987 46555555566556554321 00 0112578999999999999999987763
No 103
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=83.72 E-value=9.6 Score=33.98 Aligned_cols=58 Identities=24% Similarity=0.247 Sum_probs=41.5
Q ss_pred ceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEE
Q 044045 90 GASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQ 157 (215)
Q Consensus 90 gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~ 157 (215)
.+++.++++..-... .+ + .+..+++|++|++++... ++ +..|++|+.+++|+...-+.
T Consensus 241 ~F~l~~~~i~~~~~~-~~-~-~~~~il~v~eG~~~l~~~-----~~--~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 241 DFALYKWDISGTAEF-IK-Q-ESFSILLVLEGEGTLIGG-----GQ--TLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred ceEEEEEeccChhhh-cc-C-CCcEEEEEEcCeEEEecC-----CE--EEEEcCCcEEEEEcCCCcEE
Confidence 567777776641111 11 2 278999999999999764 33 89999999999999954443
No 104
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=82.59 E-value=5.8 Score=31.87 Aligned_cols=55 Identities=22% Similarity=0.275 Sum_probs=36.4
Q ss_pred EEEEcCCccCCCccCC-CccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEc
Q 044045 95 RIDYAPWGVIPPHVHP-RATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFP 150 (215)
Q Consensus 95 ~~~l~pgg~~~pH~Hp-~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 150 (215)
...+++|...-..--+ ....+.+|++|.+.+...+++| .+.....+.+||++-.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G-~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEG-NALTLRYVRPGEYFGEE 63 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCC-CEEEEEEecCCCeechH
Confidence 3456777654322121 2478999999999998887664 34455667999987543
No 105
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=82.18 E-value=12 Score=32.85 Aligned_cols=54 Identities=17% Similarity=0.038 Sum_probs=38.9
Q ss_pred CCCccEE-EEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeC--CCCcEEEEE
Q 044045 109 HPRATEI-LTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNV--GHGNAFSIS 169 (215)
Q Consensus 109 Hp~a~E~-~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~--g~~~a~~l~ 169 (215)
.....|+ ++.+.|++++.+. ++ ++.|.+.|.+++|+|..-..... ...++++..
T Consensus 70 fl~rrE~giV~lgG~~~V~vd-----G~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i 126 (276)
T PRK00924 70 FLERRELGIINIGGAGTVTVD-----GE--TYELGHRDALYVGKGAKEVVFASADAANPAKFYL 126 (276)
T ss_pred ecCCcEEEEEEccceEEEEEC-----CE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEE
Confidence 3335665 6778899999975 44 67799999999999988666542 234666654
No 106
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=81.13 E-value=8.7 Score=26.76 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=37.3
Q ss_pred EEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEc
Q 044045 94 ARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFP 150 (215)
Q Consensus 94 ~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 150 (215)
....+.+|... .+.......+.+|++|.+.+...+.++ .......+.+||.+-..
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDG-REQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCC-ceEEEEeecCCceechh
Confidence 34567788765 333333688999999999988765443 34456778899987443
No 107
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=80.83 E-value=7.2 Score=27.10 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=35.9
Q ss_pred EEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEE
Q 044045 94 ARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVF 149 (215)
Q Consensus 94 ~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 149 (215)
....+++|...-.. ......+.+|++|.+.+...+++| .+.....+.+|+++-.
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDG-REQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCC-cEEEEEecCCccCcCh
Confidence 34457777755322 222577999999999998876643 2345667788988733
No 108
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=78.01 E-value=18 Score=31.35 Aligned_cols=68 Identities=12% Similarity=0.027 Sum_probs=44.7
Q ss_pred eEEEEEEEcCCccCCCccCCCccEE-EEEEeCEEEEEEEecCCCCeeEEEEEcCC--------CEEEEcCCCeEEEEeCC
Q 044045 91 ASLARIDYAPWGVIPPHVHPRATEI-LTVIEGSLDVGFVTSNPENRLITKVLKKG--------DVFVFPIGLAHFQRNVG 161 (215)
Q Consensus 91 is~~~~~l~pgg~~~pH~Hp~a~E~-~~Vl~G~~~~~~~~~~~~~~~~~~~L~~G--------Dv~~~P~G~~H~~~N~g 161 (215)
+.+..++|++|.....-.. ..|+ ++.++|++++.+. ++ ..+.+..- |++++|+|..-.+...+
T Consensus 27 ~~~~~l~L~~g~~~~~~~~--~~E~~vv~l~G~~~v~~~-----g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~ 98 (261)
T PF04962_consen 27 MGFGVLRLEAGESLEFELE--RRELGVVNLGGKATVTVD-----GE-EFYELGGRESVFDGPPDALYVPRGTKVVIFAST 98 (261)
T ss_dssp BECCCEEEECCHCCCCCCC--SEEEEEEEESSSEEEEET-----TE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESS
T ss_pred cceEEEEecCCCEEeccCC--CcEEEEEEeCCEEEEEeC-----Cc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcC
Confidence 4456678888876654433 3454 7778999999985 21 26777777 99999999998888854
Q ss_pred CCcEEEE
Q 044045 162 HGNAFSI 168 (215)
Q Consensus 162 ~~~a~~l 168 (215)
+ +++.
T Consensus 99 ~--ae~~ 103 (261)
T PF04962_consen 99 D--AEFA 103 (261)
T ss_dssp T--EEEE
T ss_pred C--CEEE
Confidence 4 5544
No 109
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=76.30 E-value=10 Score=31.41 Aligned_cols=53 Identities=6% Similarity=-0.007 Sum_probs=36.8
Q ss_pred EEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEc
Q 044045 96 IDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFP 150 (215)
Q Consensus 96 ~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P 150 (215)
..+++|...-.. ......+.+|++|.+.+...+.+| .+.....+.+||++-..
T Consensus 34 ~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G-~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 34 FHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANG-KVSLIDFFAAPCFIGEI 86 (226)
T ss_pred eeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC-CEeeeeecCCCCeEEee
Confidence 457777655322 333578999999999998887664 33445678999988643
No 110
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.26 E-value=10 Score=27.31 Aligned_cols=43 Identities=30% Similarity=0.316 Sum_probs=35.2
Q ss_pred CccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEE
Q 044045 111 RATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQR 158 (215)
Q Consensus 111 ~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 158 (215)
.+.|...|+.|.+++-+.+++ ..++..+|+.+.+|.+.-..++
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs~-----dWq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGSD-----DWQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CCceEEEEEeeEEEEEcCCCc-----ccEEecCCceEEcCCCCeEEEE
Confidence 368999999999999987542 3889999999999998765544
No 111
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=73.85 E-value=2.9 Score=37.27 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEEcCCCEEEEcCCCeEEEE
Q 044045 137 ITKVLKKGDVFVFPIGLAHFQR 158 (215)
Q Consensus 137 ~~~~L~~GDv~~~P~G~~H~~~ 158 (215)
....|+|||.+++|+|.+|.+.
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred cEEecCCCCEEEecCCCceeec
Confidence 3689999999999999999984
No 112
>PHA02984 hypothetical protein; Provisional
Probab=73.61 E-value=24 Score=30.78 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=38.1
Q ss_pred EEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 115 ILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 115 ~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
++.+++|+..+..... ++..+..+++||.+.+.-++-|...-. +....++
T Consensus 96 FvlCl~G~~~I~~~~~---~~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L~ 145 (286)
T PHA02984 96 FVLCLNGKTSIECFNK---GSKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHLA 145 (286)
T ss_pred EEEEcCCeEEEEEecC---CceeeeEEecCceEEEEccceEEEEeC-CCceEEE
Confidence 4555689999888654 566799999999999999999998653 3344443
No 113
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=72.76 E-value=29 Score=27.99 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=48.5
Q ss_pred CCccCCCccEEEEEEeCEEEEEEEecCCC---CeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEE
Q 044045 105 PPHVHPRATEILTVIEGSLDVGFVTSNPE---NRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSIS 169 (215)
Q Consensus 105 ~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~---~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 169 (215)
.+-.||.++|.++-+.|+-.+-++.++++ .+++.+..++|+.+.+-+|+=|...-.=+.+..++.
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~v 139 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLV 139 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEEE
Confidence 35568889999999999988888765421 346789999999999999999975433333455543
No 114
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=72.76 E-value=39 Score=30.15 Aligned_cols=62 Identities=10% Similarity=0.171 Sum_probs=47.0
Q ss_pred CCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEEcC
Q 044045 105 PPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSS 173 (215)
Q Consensus 105 ~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s 173 (215)
..-+..+++-+++-.+|.+.++-.- + ...+.++++.+||+|....+--.|..+-.++.++..
T Consensus 148 safyNsDGDFLiVPQ~G~L~I~TEf----G---rllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 148 SAFYNSDGDFLIVPQQGRLWITTEF----G---RLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred ceeecCCCCEEEecccCcEEEEeec----c---ceeecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 3445666677777778888776432 2 478899999999999999998888887777777753
No 115
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=72.62 E-value=3.9 Score=37.53 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.7
Q ss_pred eEEEEEcCCCEEEEcCCCeEEEEe
Q 044045 136 LITKVLKKGDVFVFPIGLAHFQRN 159 (215)
Q Consensus 136 ~~~~~L~~GDv~~~P~G~~H~~~N 159 (215)
+....|++||++++|+|.+|.+..
T Consensus 236 LN~v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEEcC
Confidence 346789999999999999999843
No 116
>PLN02868 acyl-CoA thioesterase family protein
Probab=72.45 E-value=14 Score=33.73 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=37.8
Q ss_pred EEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEE
Q 044045 94 ARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVF 149 (215)
Q Consensus 94 ~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 149 (215)
....+++|..+-.- ......+.+|++|++++...+.+ ++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~-Gd~~~~lyiI~~G~V~v~~~~~~--ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVRE-GEPGDGLYFIWKGEAEVSGPAEE--ESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeC-CCcCceEEEEEeCEEEEEEECCC--CcEEEEEeCCCCEeeh
Confidence 34567888765332 23367899999999999877654 4455678899998863
No 117
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=71.98 E-value=15 Score=32.32 Aligned_cols=46 Identities=2% Similarity=-0.006 Sum_probs=37.4
Q ss_pred cEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCc
Q 044045 113 TEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGN 164 (215)
Q Consensus 113 ~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~ 164 (215)
.=++++.+|.+.+.-.+ +. +..+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~----g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSS----GE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCC----Cc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 46799999999987542 22 689999999999999999999986544
No 118
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=71.96 E-value=2.1 Score=37.70 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=18.4
Q ss_pred EEEEcCCCEEEEcCCCeEEE
Q 044045 138 TKVLKKGDVFVFPIGLAHFQ 157 (215)
Q Consensus 138 ~~~L~~GDv~~~P~G~~H~~ 157 (215)
...+++||++++|+|.+|..
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 57899999999999999984
No 119
>PHA00672 hypothetical protein
Probab=71.33 E-value=34 Score=26.61 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=55.2
Q ss_pred CceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 89 LGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 89 ~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
.|+....+.++.|....--.|. -|-+++.+|.+.+..++ . ..+|+.=-++.-|+|.....+...++.+..+
T Consensus 45 ~GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~tdg-----e--~~rl~g~~~i~~~aG~KragyAHeDT~wt~~ 115 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIGG-----E--AVELRGYHVIPASAGRKQAFVAHADTDLTML 115 (152)
T ss_pred cceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeCC-----c--EEEEecceeeecCCCcccceeeeccceEEEE
Confidence 3888899999999888766676 45559999999998752 2 6888888999999998888777666554443
No 120
>PHA02890 hypothetical protein; Provisional
Probab=71.29 E-value=40 Score=29.31 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=36.1
Q ss_pred cEE--EEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEe
Q 044045 113 TEI--LTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRN 159 (215)
Q Consensus 113 ~E~--~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 159 (215)
.|. +.+++|+..+.+... ++..+..+++||.+.+.-++-|.+.-
T Consensus 91 nEy~FVlCL~Gs~~In~~~~---d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 91 IECFFVACIEGSCKINVNIG---DREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred ccEEEEEEeCCeEEEEEecC---CceeeeeeecCceEEEEccceEEEEc
Confidence 455 455689999888644 56679999999999999999999976
No 121
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=67.71 E-value=40 Score=27.01 Aligned_cols=82 Identities=17% Similarity=0.106 Sum_probs=46.4
Q ss_pred ceEEEEEEEcCCc--cCCCccCCCccEEEEEEeCEE-EEEEEecCC---C-CeeEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 044045 90 GASLARIDYAPWG--VIPPHVHPRATEILTVIEGSL-DVGFVTSNP---E-NRLITKVLKKGDVFVFPIGLAHFQRNVGH 162 (215)
Q Consensus 90 gis~~~~~l~pgg--~~~pH~Hp~a~E~~~Vl~G~~-~~~~~~~~~---~-~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 162 (215)
++++.+..-.+.- +..+-.|+.++|.++-+.|+. .+.++..++ + .+++.+.+.+|+.+.+-+|+-|...-.=+
T Consensus 56 ~~si~~~~~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~ 135 (165)
T PF04115_consen 56 GISIFRAQPRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD 135 (165)
T ss_dssp EEEEEEEEBE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS
T ss_pred EEEEEEeeccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC
Confidence 4555555332222 223556888999999999988 555554432 1 45678999999999999999998654444
Q ss_pred CcEEEEEEE
Q 044045 163 GNAFSISAL 171 (215)
Q Consensus 163 ~~a~~l~~~ 171 (215)
+++.++.+-
T Consensus 136 ~~~~f~vv~ 144 (165)
T PF04115_consen 136 EPADFLVVD 144 (165)
T ss_dssp SEEEEEEEE
T ss_pred CcceEEEEe
Confidence 666666553
No 122
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=66.30 E-value=11 Score=33.77 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=35.7
Q ss_pred CeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceee
Q 044045 134 NRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISALSSQNPGVIT 180 (215)
Q Consensus 134 ~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~ 180 (215)
.+.++-...+|+++++|.|.-|.+.|...+-|+---..+.+|.+++-
T Consensus 260 ~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~Vw 306 (407)
T KOG2130|consen 260 YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFVW 306 (407)
T ss_pred cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCceee
Confidence 45668889999999999999999999876655444444566666543
No 123
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=65.10 E-value=57 Score=26.76 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=34.2
Q ss_pred EEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEE
Q 044045 97 DYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVF 149 (215)
Q Consensus 97 ~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~ 149 (215)
.+++|...-.- -.....+.+|++|.+.+...+++| .......+.+||++-.
T Consensus 41 ~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G-~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 41 PIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQG-DEQITGFHLAGDLVGF 91 (235)
T ss_pred eecCCCEeECC-CCCcceEEEEeeceEEEEEECCCC-CEEEEEeccCCceecc
Confidence 56777644322 222577899999999998877664 3334455689999854
No 124
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=64.20 E-value=28 Score=27.37 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=37.6
Q ss_pred EEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcC
Q 044045 94 ARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPI 151 (215)
Q Consensus 94 ~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~ 151 (215)
....+++|...-..--+ +.-+.+|++|.+.+....++| .+.....+.+||++-...
T Consensus 24 ~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G-~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 24 EVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDG-REIILGFLGPGDFFGELA 79 (214)
T ss_pred eeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCC-cEEEEEEecCCchhhhHH
Confidence 34456677544333333 455899999999999987763 334455788999996664
No 125
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=63.90 E-value=51 Score=25.95 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=40.4
Q ss_pred CCccCCCccEEEEEEeCEEEEEEEecCC----------------CCeeEEEEEcCCCEEEEcCCCeEEEE
Q 044045 105 PPHVHPRATEILTVIEGSLDVGFVTSNP----------------ENRLITKVLKKGDVFVFPIGLAHFQR 158 (215)
Q Consensus 105 ~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~----------------~~~~~~~~L~~GDv~~~P~G~~H~~~ 158 (215)
.+-.|.+=..+-|+++|+=.+++..... .+......|++|+.++|.++.+|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 4556877899999999998888864321 01112678899999999999999875
No 126
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=63.13 E-value=22 Score=25.19 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=37.9
Q ss_pred EEEcCCccCCCccCC---CccEEEEE--Ee-CE-----EEEEEEecC-CCCeeEEEE-----EcCCCEEEEcC-CCeEEE
Q 044045 96 IDYAPWGVIPPHVHP---RATEILTV--IE-GS-----LDVGFVTSN-PENRLITKV-----LKKGDVFVFPI-GLAHFQ 157 (215)
Q Consensus 96 ~~l~pgg~~~pH~Hp---~a~E~~~V--l~-G~-----~~~~~~~~~-~~~~~~~~~-----L~~GDv~~~P~-G~~H~~ 157 (215)
....+|+...||+.. ....+.++ +. .. +++.+.... .++...... .++|++++|+. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 346889999999866 34444443 33 11 333343210 001212333 88999999999 999998
Q ss_pred EeC
Q 044045 158 RNV 160 (215)
Q Consensus 158 ~N~ 160 (215)
.-.
T Consensus 84 ~~v 86 (100)
T PF13640_consen 84 TPV 86 (100)
T ss_dssp EEE
T ss_pred ccc
Confidence 776
No 127
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=62.44 E-value=7.2 Score=28.62 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=7.7
Q ss_pred CchhHHHHHHHHHH
Q 044045 1 MAKHILVLNLLTVT 14 (215)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (215)
|++..+|++.|+|+
T Consensus 1 MaSK~~llL~l~LA 14 (95)
T PF07172_consen 1 MASKAFLLLGLLLA 14 (95)
T ss_pred CchhHHHHHHHHHH
Confidence 78666664444433
No 128
>COG1741 Pirin-related protein [General function prediction only]
Probab=59.85 E-value=1.2e+02 Score=26.54 Aligned_cols=101 Identities=14% Similarity=0.053 Sum_probs=54.1
Q ss_pred cCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCC
Q 044045 82 QIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVG 161 (215)
Q Consensus 82 ~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g 161 (215)
..|.-... +.+..+.+++|+..+.+ -..-.-++||++|++++.= + ....+|-+.+..|.--.....+
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~g-------~----~~~~~~~l~i~~g~~i~l~a~~ 231 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVNG-------Q----HETDGDGLAILDGDEITLVADS 231 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEcc-------c----ccccccceEEecCCeEEEEecC
Confidence 34444444 77888889999987776 2223567999999887631 1 1033344444434322333334
Q ss_pred CCcEEEEEEEcCCC--CceeeechhhhcCCCCCCHHHHHHHc
Q 044045 162 HGNAFSISALSSQN--PGVITIANAVFGSNPSIADDLLAKAF 201 (215)
Q Consensus 162 ~~~a~~l~~~~s~~--pg~~~~~~~lf~~~p~~p~~vl~~af 201 (215)
...++++.. .-+- .-...+.+ |-. -+.+-+++|+
T Consensus 232 ~~~a~vLL~-~g~P~~~~~~~~g~--fV~---~s~e~i~~a~ 267 (276)
T COG1741 232 PAGARVLLL-DGPPLGEPIVIYGP--FVM---NSKEEIEQAK 267 (276)
T ss_pred CCCeEEEEE-cCCCCCCceeEECC--ccc---CCHHHHHHHH
Confidence 555666643 2222 22233322 443 3667777665
No 129
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=58.86 E-value=85 Score=24.49 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=50.9
Q ss_pred EEEEEEEcCCccCCCccCCCccEEEEEEeC-EEEEEEEecCCCCeeEEEEEcC----C--CEEEEcCCCeEEEEeCCCCc
Q 044045 92 SLARIDYAPWGVIPPHVHPRATEILTVIEG-SLDVGFVTSNPENRLITKVLKK----G--DVFVFPIGLAHFQRNVGHGN 164 (215)
Q Consensus 92 s~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G-~~~~~~~~~~~~~~~~~~~L~~----G--Dv~~~P~G~~H~~~N~g~~~ 164 (215)
+....-+.++....+|.= +++|+.+-..| .+++.+..++ ++..+.+|.. | =.++||+|.-...+..+...
T Consensus 42 T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~d--g~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~ 118 (139)
T PF06172_consen 42 TSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPD--GSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGD 118 (139)
T ss_dssp EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTT--STEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSS
T ss_pred eEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCC--CCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCC
Confidence 344444777766666654 58999888888 5888888776 5555667743 4 36899999988886555555
Q ss_pred EEEEEE
Q 044045 165 AFSISA 170 (215)
Q Consensus 165 a~~l~~ 170 (215)
-.+++.
T Consensus 119 y~Lvsc 124 (139)
T PF06172_consen 119 YSLVSC 124 (139)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555543
No 130
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=58.25 E-value=25 Score=27.72 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=27.3
Q ss_pred ccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEE
Q 044045 112 ATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFV 148 (215)
Q Consensus 112 a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~ 148 (215)
...+.+|++|.+.+...+++| .......+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G-~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESG-EEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCC-cEeeeEEccCCCEee
Confidence 467899999999998877653 333456789999874
No 131
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=57.93 E-value=63 Score=25.83 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=48.6
Q ss_pred eEEEEEEE--cCCccCCCccCCCccEEEEEEeCEEEEEEEecCC-----------C-----C--eeEEEEEcCCCEEEEc
Q 044045 91 ASLARIDY--APWGVIPPHVHPRATEILTVIEGSLDVGFVTSNP-----------E-----N--RLITKVLKKGDVFVFP 150 (215)
Q Consensus 91 is~~~~~l--~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~-----------~-----~--~~~~~~L~~GDv~~~P 150 (215)
+-+...+. .+.....+-.|.+=.++-++++|+=.+++....+ | + .....+|.+|+..+|=
T Consensus 46 if~~v~~~~t~~~~~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFf 125 (154)
T COG2731 46 IFYNVMEDETQEAEEKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFF 125 (154)
T ss_pred EEEEEEeccccchhhcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEEC
Confidence 44444443 2333444666777899999999998887765431 0 0 1236789999999999
Q ss_pred CCCeEEEEeCCC
Q 044045 151 IGLAHFQRNVGH 162 (215)
Q Consensus 151 ~G~~H~~~N~g~ 162 (215)
+|.+|.-.....
T Consensus 126 P~e~H~P~c~~~ 137 (154)
T COG2731 126 PGEPHRPGCNVG 137 (154)
T ss_pred CCCccccccccC
Confidence 999998765544
No 132
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=57.23 E-value=82 Score=24.36 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.3
Q ss_pred CCCccCCCccEEEEEEeCEEEEEEE
Q 044045 104 IPPHVHPRATEILTVIEGSLDVGFV 128 (215)
Q Consensus 104 ~~pH~Hp~a~E~~~Vl~G~~~~~~~ 128 (215)
..+-.|.+-..+-|+++|+=++++.
T Consensus 61 ~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 61 KKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred cchhhhhheEEEEEeecceEEEEEe
Confidence 3455677789999999999888885
No 133
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=56.98 E-value=1.1e+02 Score=26.44 Aligned_cols=85 Identities=18% Similarity=0.100 Sum_probs=54.1
Q ss_pred eEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecC----CCCeeEEEEEcCCCEEEE
Q 044045 74 RVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSN----PENRLITKVLKKGDVFVF 149 (215)
Q Consensus 74 ~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~----~~~~~~~~~L~~GDv~~~ 149 (215)
.+..++.++ ++..- +.+..++|.+|.....-.-. -+-++++++|++++...+.. | .|.-.++=++=|++++
T Consensus 15 ~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~~-~E~clV~v~Gk~~vs~~g~~f~~iG-~R~SvFe~~p~~~vYv 89 (270)
T COG3718 15 LVQDVTPES-AGWEY--VGFRLLRLAAGESATEETGD-RERCLVLVTGKATVSAHGSTFGEIG-TRMSVFERKPPDSVYV 89 (270)
T ss_pred ceEEecCCC-CCcee--EEEEEEEccCCCcccccCCC-ceEEEEEEeeeEEEeeccchHhhcc-cccccccCCCCCeEEe
Confidence 344554333 33333 44555668999877665554 34567778999998765432 1 2322344457799999
Q ss_pred cCCCeEEEEeCCCC
Q 044045 150 PIGLAHFQRNVGHG 163 (215)
Q Consensus 150 P~G~~H~~~N~g~~ 163 (215)
|.|....+...++-
T Consensus 90 p~g~~~~vtA~t~~ 103 (270)
T COG3718 90 PAGSAFSVTATTDL 103 (270)
T ss_pred cCCceEEEEeecce
Confidence 99999888876653
No 134
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=55.53 E-value=64 Score=27.81 Aligned_cols=84 Identities=24% Similarity=0.226 Sum_probs=55.1
Q ss_pred ceEEEEEEEcCCcc---CCCccCCCccEEEEEE---eCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCC
Q 044045 90 GASLARIDYAPWGV---IPPHVHPRATEILTVI---EGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHG 163 (215)
Q Consensus 90 gis~~~~~l~pgg~---~~pH~Hp~a~E~~~Vl---~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 163 (215)
.+++....++||.+ .|+|.|.|-.|..+-. +-+-.+.+.++- .+.+...++--+.++-|+-.+|.-. |..
T Consensus 176 QL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP--~ETRHiv~~NEqAViSP~WSIHSG~--GT~ 251 (278)
T COG3717 176 QLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQP--QETRHIVMHNEQAVISPPWSIHSGV--GTA 251 (278)
T ss_pred hhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCC--CceeEEEEeccceeeCCCceeecCc--ccc
Confidence 45667777999984 5789999988864332 122233333322 2333667777788888999999864 556
Q ss_pred cEEEEEEEcCCCCc
Q 044045 164 NAFSISALSSQNPG 177 (215)
Q Consensus 164 ~a~~l~~~~s~~pg 177 (215)
.-.+|++...+|-.
T Consensus 252 ~YtFIWaMaGeN~~ 265 (278)
T COG3717 252 NYTFIWAMAGENQD 265 (278)
T ss_pred ceEEEEEecccccc
Confidence 77888887655543
No 135
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=55.07 E-value=1e+02 Score=24.10 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=37.1
Q ss_pred ceEEEEEEEcCCc--cCCCccCCCccEEEEEEeCEEEEEEEe-cCC-----------------CCe-eEEEEEcCCCEEE
Q 044045 90 GASLARIDYAPWG--VIPPHVHPRATEILTVIEGSLDVGFVT-SNP-----------------ENR-LITKVLKKGDVFV 148 (215)
Q Consensus 90 gis~~~~~l~pgg--~~~pH~Hp~a~E~~~Vl~G~~~~~~~~-~~~-----------------~~~-~~~~~L~~GDv~~ 148 (215)
++.+...+..... -..+-.|.+-..+-|+++|+=++++.. ... +++ .....|++|+.++
T Consensus 45 ~~~~~v~~~~t~~~~~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~i 124 (153)
T PF04074_consen 45 DLFANVQEYETKPEEERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAI 124 (153)
T ss_dssp S-EEEEE--B-B-GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEE
T ss_pred cEEEEeeccccccccccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEE
Confidence 3444444444433 334556888899999999998888832 210 011 1246799999999
Q ss_pred EcCCCeEEEE
Q 044045 149 FPIGLAHFQR 158 (215)
Q Consensus 149 ~P~G~~H~~~ 158 (215)
|-++.+|.-.
T Consensus 125 ffP~d~H~p~ 134 (153)
T PF04074_consen 125 FFPEDAHRPG 134 (153)
T ss_dssp E-TT--EEEE
T ss_pred ECCCcccccc
Confidence 9999999854
No 136
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=54.44 E-value=62 Score=26.60 Aligned_cols=51 Identities=12% Similarity=0.249 Sum_probs=35.2
Q ss_pred EEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEE
Q 044045 95 RIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFV 148 (215)
Q Consensus 95 ~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~ 148 (215)
...+++|...- +-......+.+|++|.+.+.....+ ++..-..+.+||++-
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~--~~~~i~~~~~g~~~g 82 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQD--RETTLAILRPVSTFI 82 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCC--ceEEEEEeCCCchhh
Confidence 45577776553 3344468899999999998875432 444566788999764
No 137
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=53.91 E-value=16 Score=28.62 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHcCCCHHHHHhhhcC
Q 044045 190 PSIADDLLAKAFQLDKSVVGQLQTK 214 (215)
Q Consensus 190 p~~p~~vl~~af~~~~~~v~~l~~~ 214 (215)
|.++++-+|++|+++++.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4689999999999999999999865
No 138
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.67 E-value=6.4 Score=33.22 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=52.5
Q ss_pred CceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEe---cCC---CCe---eEE--------EEEcCCCEEEEcC
Q 044045 89 LGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVT---SNP---ENR---LIT--------KVLKKGDVFVFPI 151 (215)
Q Consensus 89 ~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~---~~~---~~~---~~~--------~~L~~GDv~~~P~ 151 (215)
-++|+....++|++++|.|-||.-+-+.=++=|++.+---+ ++. +.. ++. ++-.-+-.+..|+
T Consensus 73 D~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ePd~~~~~dp~q~~r~akl~~d~~~T~~s~~~~LyP~ 152 (236)
T KOG4281|consen 73 DRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEPDEPQTEDPHQPVRPAKLVSDKEFTAASPASTLYPK 152 (236)
T ss_pred CceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCCCCcccCCCCcceeeeeEeccceecCCCCCcEeeec
Confidence 37889999999999999999997777777888998774432 110 011 111 2222333444553
Q ss_pred --CCeEEEEeCCCCcEEEEEEEcC
Q 044045 152 --GLAHFQRNVGHGNAFSISALSS 173 (215)
Q Consensus 152 --G~~H~~~N~g~~~a~~l~~~~s 173 (215)
|-.|.+...+ .+-++-+++.
T Consensus 153 ~ggn~h~f~a~t--~cAvlDILsP 174 (236)
T KOG4281|consen 153 TGGNHHCFTAIT--PCAVLDILSP 174 (236)
T ss_pred CCCcEeeeeecc--ceeEEeeccC
Confidence 5667666544 6777777753
No 139
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=53.56 E-value=70 Score=21.86 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=33.9
Q ss_pred EEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEE
Q 044045 118 VIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSI 168 (215)
Q Consensus 118 Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 168 (215)
-..|...+.+.+.+| ..++...+++||..-++...+-.+ ..|+..++-+
T Consensus 4 ~a~~~sWv~V~d~dG-~~~~~~~l~~G~~~~~~~~~~~~i-~iGna~~v~v 52 (77)
T PF13464_consen 4 TATGDSWVEVTDADG-KVLFSGTLKAGETKTFEGKEPFRI-RIGNAGAVEV 52 (77)
T ss_pred EEeCCeEEEEEeCCC-cEeeeeeeCCCcEEEEeCCCCEEE-EEeCCCcEEE
Confidence 345788888876654 567899999999999965554443 4565555544
No 140
>PLN02288 mannose-6-phosphate isomerase
Probab=53.22 E-value=10 Score=34.86 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=19.9
Q ss_pred EEEEcCCCEEEEcCCCeEEEEe
Q 044045 138 TKVLKKGDVFVFPIGLAHFQRN 159 (215)
Q Consensus 138 ~~~L~~GDv~~~P~G~~H~~~N 159 (215)
...|++||.+++|+|.+|.+.-
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~ 273 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLS 273 (394)
T ss_pred eEecCCCCEEEecCCCCceecC
Confidence 5899999999999999999853
No 141
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=50.33 E-value=19 Score=28.80 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHcCCCHHHHHhhhcC
Q 044045 190 PSIADDLLAKAFQLDKSVVGQLQTK 214 (215)
Q Consensus 190 p~~p~~vl~~af~~~~~~v~~l~~~ 214 (215)
|.++++-+|+.|+++++.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4699999999999999999999865
No 142
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=50.11 E-value=54 Score=25.46 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=45.2
Q ss_pred CCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEE----eCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEE
Q 044045 83 IPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVI----EGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQR 158 (215)
Q Consensus 83 ~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl----~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 158 (215)
-|+++ .+.+..+.+++|.....- ++.|+...+ .|++.+++.++. -..++|||++.+-.|..-.++
T Consensus 11 ~P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~------~~~~~PGDIirLt~Gy~Si~q 79 (134)
T KOG3416|consen 11 KPGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEE------GCLIQPGDIIRLTGGYASIFQ 79 (134)
T ss_pred Chhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCc------CcccCCccEEEecccchhhhc
Confidence 35665 456677778887544322 245554444 588888888643 468899999999999877766
Q ss_pred e
Q 044045 159 N 159 (215)
Q Consensus 159 N 159 (215)
+
T Consensus 80 g 80 (134)
T KOG3416|consen 80 G 80 (134)
T ss_pred C
Confidence 4
No 143
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=48.66 E-value=1.2e+02 Score=24.63 Aligned_cols=67 Identities=9% Similarity=-0.025 Sum_probs=48.3
Q ss_pred CCccCCCccEEEEEEeC-EEEEEEEecCC---CCeeEEEEEcCCCEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 044045 105 PPHVHPRATEILTVIEG-SLDVGFVTSNP---ENRLITKVLKKGDVFVFPIGLAHFQRNVGHGNAFSISAL 171 (215)
Q Consensus 105 ~pH~Hp~a~E~~~Vl~G-~~~~~~~~~~~---~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~~~ 171 (215)
..-.|+.+++.++-+.| ...+.++.+++ .+....+....|+.+.+-+|+=|...-.=+.+..++.+-
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvd 142 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVD 142 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEe
Confidence 35568888999999999 76666664432 134678999999999999999998654434455555543
No 144
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=46.96 E-value=95 Score=24.27 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=38.6
Q ss_pred cEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEe---CCCCcEEEEE
Q 044045 113 TEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRN---VGHGNAFSIS 169 (215)
Q Consensus 113 ~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N---~g~~~a~~l~ 169 (215)
.-+.+|++|+=++.++ ++ .+...+|+.++.+.+++-..+- ..++|...+.
T Consensus 24 p~i~~vlQG~K~~~~g-----~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~ 76 (155)
T PF06719_consen 24 PSICIVLQGSKRVHLG-----DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALS 76 (155)
T ss_pred CeEEEEEeeeEEEEEC-----Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEE
Confidence 4689999999999886 23 7999999999999998776543 3455655554
No 145
>PF13994 PgaD: PgaD-like protein
Probab=46.42 E-value=24 Score=27.37 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.6
Q ss_pred CCCHHHHHHHcCCCHHHHHhhhcC
Q 044045 191 SIADDLLAKAFQLDKSVVGQLQTK 214 (215)
Q Consensus 191 ~~p~~vl~~af~~~~~~v~~l~~~ 214 (215)
+++++-+|+.|++++++++++++.
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC
Confidence 389999999999999999999764
No 146
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=45.49 E-value=12 Score=34.15 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=42.0
Q ss_pred CCccCCCc---cCCCccEEEEEEeCEEEEEEEecCC-----------------------CCeeEEEEEcCCCEEEEcCCC
Q 044045 100 PWGVIPPH---VHPRATEILTVIEGSLDVGFVTSNP-----------------------ENRLITKVLKKGDVFVFPIGL 153 (215)
Q Consensus 100 pgg~~~pH---~Hp~a~E~~~Vl~G~~~~~~~~~~~-----------------------~~~~~~~~L~~GDv~~~P~G~ 153 (215)
.|...+.| +|. .-+...+-|+=+--+..+.. .++..+..=++|+++++|.|.
T Consensus 207 ~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 207 AGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 45567788 664 45566677765554444321 022234455899999999999
Q ss_pred eEEEEeCCCC
Q 044045 154 AHFQRNVGHG 163 (215)
Q Consensus 154 ~H~~~N~g~~ 163 (215)
-|...|.+++
T Consensus 285 ~hQV~NL~dT 294 (427)
T KOG2131|consen 285 HHQVLNLGDT 294 (427)
T ss_pred ccccccccce
Confidence 9999999986
No 147
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.35 E-value=51 Score=32.85 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=34.5
Q ss_pred EcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEE
Q 044045 98 YAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVF 147 (215)
Q Consensus 98 l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 147 (215)
+.||..+-..=.+ -+|+.+|++|++++.-.+.+ +......|++||++
T Consensus 447 f~pge~iireGd~-v~~myFI~rG~le~~~~~~g--~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 447 FTPGEYIIREGDP-VTDMYFIVRGSLESITTDGG--GFFVVAILGPGDFF 493 (727)
T ss_pred cCCCCeEEecCCc-cceeEEEEeeeEEEEEccCC--ceEEEEEecCCCcc
Confidence 5677666555556 69999999999987554321 44568899999998
No 148
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=38.85 E-value=70 Score=32.07 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=33.8
Q ss_pred EEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEE
Q 044045 93 LARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVF 147 (215)
Q Consensus 93 ~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 147 (215)
+....+.||...-..-.. .+++.+|++|++.+... .++ ++.....+++||++
T Consensus 397 ~~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~-~~~-~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDS-EGE-KERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCCC-CceEEEEEecEEEEEEe-cCC-cceeeEEccCCCEe
Confidence 334457888754322233 67899999999998643 221 33345689999987
No 149
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=38.23 E-value=12 Score=37.60 Aligned_cols=58 Identities=24% Similarity=0.213 Sum_probs=37.8
Q ss_pred EcCCccCCCccCCCccEEEEEEeCE---E--EEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEeCCC
Q 044045 98 YAPWGVIPPHVHPRATEILTVIEGS---L--DVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRNVGH 162 (215)
Q Consensus 98 l~pgg~~~pH~Hp~a~E~~~Vl~G~---~--~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 162 (215)
.+-|..+++-.||-.++-.|.-++- + ++++ +-.+++=..||.++||+|.+|.++|.-.
T Consensus 762 ~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGV-------e~WtfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 762 KEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGV-------EPWTFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred HHhcCCCCcccCCCcccceeccHHHHHHHHHHhCC-------CccchhhcccceEEecCCCcHHhhhhhh
Confidence 3444455555577666666665442 1 2222 1236666889999999999999999754
No 150
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=37.39 E-value=1e+02 Score=26.17 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.2
Q ss_pred EEEEEcCCCEEEEcCCCeEEEEeCCC
Q 044045 137 ITKVLKKGDVFVFPIGLAHFQRNVGH 162 (215)
Q Consensus 137 ~~~~L~~GDv~~~P~G~~H~~~N~g~ 162 (215)
....+++|++++||....|...-+..
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~pVt~ 166 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTPVTR 166 (226)
T ss_pred EEEecCCCeEEEECCCCceeeeeccC
Confidence 36788999999999999999987543
No 151
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=35.72 E-value=66 Score=21.02 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHhhh-hhcCCCCCcceeee-CCCCCcccCCcccC
Q 044045 3 KHILVLNLLTVTCALV-VAFEPSPLQDFCVA-DPSGSARVNGFACM 46 (215)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~d~~~~~d~cv~-~~~~~~~~~g~~ck 46 (215)
+..++++++.++-... ..+-|--+.-=||+ |.+....++--||.
T Consensus 4 ~lkf~lv~imlaqllsctpsapyeikspcvs~didd~s~ls~npci 49 (60)
T PF10913_consen 4 SLKFLLVLIMLAQLLSCTPSAPYEIKSPCVSADIDDNSSLSVNPCI 49 (60)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccccCCccccccCCCccccccccc
Confidence 4444544444443322 23444456777988 44333344445776
No 152
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=32.46 E-value=74 Score=31.20 Aligned_cols=50 Identities=28% Similarity=0.391 Sum_probs=34.6
Q ss_pred eEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEE
Q 044045 91 ASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVF 147 (215)
Q Consensus 91 is~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~ 147 (215)
+.+......||.+. .|+-..-+-+.||++|++++.-.+ + ....|.+||++
T Consensus 569 m~f~~~H~APGDLl-YHtGESvDaLcFvVsGSLEVIQDD-----E-VVAILGKGDVF 618 (971)
T KOG0501|consen 569 MEFQTNHCAPGDLL-YHTGESVDALCFVVSGSLEVIQDD-----E-VVAILGKGDVF 618 (971)
T ss_pred HHHHhccCCCccee-eecCCccceEEEEEecceEEeecC-----c-EEEEeecCccc
Confidence 33444456777543 455444577899999999986543 2 47899999998
No 153
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=31.98 E-value=65 Score=26.24 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=22.6
Q ss_pred ccEEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcC
Q 044045 112 ATEILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPI 151 (215)
Q Consensus 112 a~E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~ 151 (215)
..-++|+++|++.+... ++ ...|.+||.+++..
T Consensus 135 ~~~l~~~~~G~~~i~~~-----~~--~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 135 STVLVYVLEGAWSITEG-----GN--CISLSAGDLLLIDD 167 (184)
T ss_dssp SEEEEEESSS-EEECCC-----EE--EEEE-TT-EEEEES
T ss_pred CEEEEEEeeCcEEEecC-----CC--ceEcCCCCEEEEeC
Confidence 56778999998776432 12 79999999998877
No 154
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=30.13 E-value=1.2e+02 Score=19.97 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=20.0
Q ss_pred EEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEE
Q 044045 124 DVGFVTSNPENRLITKVLKKGDVFVFPIGLAHF 156 (215)
Q Consensus 124 ~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~ 156 (215)
++++-++. ++..+.+|++|..+.--+|.++.
T Consensus 11 rVQlTD~K--gr~~Ti~L~~G~~fhThrG~i~H 41 (54)
T PF14801_consen 11 RVQLTDPK--GRKHTITLEPGGEFHTHRGAIRH 41 (54)
T ss_dssp EEEEEETT----EEEEE--TT-EEEETTEEEEH
T ss_pred EEEEccCC--CCeeeEEECCCCeEEcCccccch
Confidence 45666665 78889999999999888887654
No 155
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=29.34 E-value=45 Score=30.28 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.8
Q ss_pred EEEEcCCCEEEEcCCCeEEEEe
Q 044045 138 TKVLKKGDVFVFPIGLAHFQRN 159 (215)
Q Consensus 138 ~~~L~~GDv~~~P~G~~H~~~N 159 (215)
...|++|+.+++|+|.+|.+.-
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 4689999999999999999864
No 156
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=28.72 E-value=96 Score=24.09 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCEEEEcCCCeEEEE-eCCCC
Q 044045 135 RLITKVLKKGDVFVFPIGLAHFQR-NVGHG 163 (215)
Q Consensus 135 ~~~~~~L~~GDv~~~P~G~~H~~~-N~g~~ 163 (215)
......+++||++++...++|.-. |.++.
T Consensus 178 ~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp GCEEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred ceEEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 345778999999999999999874 55544
No 157
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=27.73 E-value=1.8e+02 Score=26.45 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=57.9
Q ss_pred CCceEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCe-eEEEEEcCCCEEE-
Q 044045 71 LGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENR-LITKVLKKGDVFV- 148 (215)
Q Consensus 71 ~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~-~~~~~L~~GDv~~- 148 (215)
.|..+..++... ++.-+.+.|+.++...+..-+....+..+-.+++..-++.+..++ ++ +-...|++||-+.
T Consensus 251 sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~d--G~~vsVt~Lk~GD~VL~ 324 (344)
T PRK02290 251 SGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPD--GKPVSVVDLKPGDEVLG 324 (344)
T ss_pred CCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCC--CCEeeeeecCCCCEEEE
Confidence 466666665432 233567888888887766655554678999999999999999876 44 4467899999774
Q ss_pred -EcCCCeEEEEe
Q 044045 149 -FPIGLAHFQRN 159 (215)
Q Consensus 149 -~P~G~~H~~~N 159 (215)
.+.+--|+-..
T Consensus 325 ~~~~~~RHfG~~ 336 (344)
T PRK02290 325 YLEEAARHFGMA 336 (344)
T ss_pred EecCCcccccce
Confidence 45555666443
No 158
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=24.07 E-value=1.6e+02 Score=24.00 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=32.3
Q ss_pred EEEEEEeCEEEEEEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEEe
Q 044045 114 EILTVIEGSLDVGFVTSNPENRLITKVLKKGDVFVFPIGLAHFQRN 159 (215)
Q Consensus 114 E~~~Vl~G~~~~~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~N 159 (215)
-+..-++|+..+.+... +.+++..|.+||-+++..+.+=.+..
T Consensus 131 ~~~~~l~G~G~v~l~~~---G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 131 LFMLKLSGRGTVFLSGY---GAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp EEEEEEESSCEEEEEEC---CSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred cEEEEEEEEEEEEEEeC---CcEEEEEccCCceEEEcCCCEEEECC
Confidence 34566789888888765 67788999999999998887766643
No 159
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=23.90 E-value=49 Score=21.94 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=16.5
Q ss_pred CHHHHHHHcCCCHHHHHhhhcC
Q 044045 193 ADDLLAKAFQLDKSVVGQLQTK 214 (215)
Q Consensus 193 p~~vl~~af~~~~~~v~~l~~~ 214 (215)
.+.-|.+.+|++++++++||.+
T Consensus 45 ~e~Yl~~~lgl~~~~i~~Lr~~ 66 (68)
T PF13348_consen 45 VENYLREELGLSEEDIERLRER 66 (68)
T ss_dssp HHHHHHHT-T--HHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHH
Confidence 6778999999999999999863
No 160
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=23.82 E-value=90 Score=31.42 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=46.5
Q ss_pred EEEcCCccCC-CccCCCccEEEEEEeCEEEE----------------EEEecCCCCeeEEEEEcCCCEEEEcCCCeEEEE
Q 044045 96 IDYAPWGVIP-PHVHPRATEILTVIEGSLDV----------------GFVTSNPENRLITKVLKKGDVFVFPIGLAHFQR 158 (215)
Q Consensus 96 ~~l~pgg~~~-pH~Hp~a~E~~~Vl~G~~~~----------------~~~~~~~~~~~~~~~L~~GDv~~~P~G~~H~~~ 158 (215)
..+.+||... -|.+. +.-++|-+.++-.- -|++. -.+.+.-.|++|+.++||.|.+|...
T Consensus 141 fhidfggtsvwyhil~-G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~--VdkC~~~~l~~g~T~~iPsGwIhAV~ 217 (776)
T KOG1633|consen 141 FHIDFGGTSVWYHILA-GEKTFYLIPPTCENLELYECWESSTPQDEIFFGDC--VDKCYKCILKQGQTLFIPSGWIHAVL 217 (776)
T ss_pred cccCCCCcchhhhhhc-cccceeeeCCcccchhhhhhhhhcccccccccCCc--cceeEEEEeccCceEecccceeEeee
Confidence 4466666544 46666 56666666554221 11111 13445678999999999999999998
Q ss_pred eCCCCcEEEEEEEcCC
Q 044045 159 NVGHGNAFSISALSSQ 174 (215)
Q Consensus 159 N~g~~~a~~l~~~~s~ 174 (215)
-+.+.-+...-++.+.
T Consensus 218 Tp~d~l~fgGnflhsl 233 (776)
T KOG1633|consen 218 TPTDCLVFGGNFLHSL 233 (776)
T ss_pred cCcchheeccchhhhh
Confidence 7766544444444443
No 161
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=23.39 E-value=2.3e+02 Score=25.82 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=57.2
Q ss_pred CCceEEEeecccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCCCCe-eEEEEEcCCCEEE-
Q 044045 71 LGSRVTPVTVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNPENR-LITKVLKKGDVFV- 148 (215)
Q Consensus 71 ~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~~~~-~~~~~L~~GDv~~- 148 (215)
.|..+..++..- ++.-+.+.|++++...+..-+....+.++-.+++..-++.+..++ ++ +-...|++||-+.
T Consensus 261 sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~--G~~vsVt~Lk~GD~vL~ 334 (354)
T PF01959_consen 261 SGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPD--GEPVSVTELKPGDEVLV 334 (354)
T ss_pred CCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCC--CCEeeeeecCCCCEEEE
Confidence 466666665332 223567888888877766554444688999999999999998876 34 3467899999774
Q ss_pred -EcCCCeEEEEeC
Q 044045 149 -FPIGLAHFQRNV 160 (215)
Q Consensus 149 -~P~G~~H~~~N~ 160 (215)
++.+--|+-.-.
T Consensus 335 ~~~~~~RHfG~~I 347 (354)
T PF01959_consen 335 YLEEAGRHFGMKI 347 (354)
T ss_pred EecCCCcccceEe
Confidence 455666665443
No 162
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=22.96 E-value=1.2e+02 Score=18.30 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=15.9
Q ss_pred CCCHHHHHHHcC-CCHHHHHhhh
Q 044045 191 SIADDLLAKAFQ-LDKSVVGQLQ 212 (215)
Q Consensus 191 ~~p~~vl~~af~-~~~~~v~~l~ 212 (215)
.+|+|++.+-|. ++.+++-++.
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~~ 25 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRLS 25 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHHT
T ss_pred HhHHHHHHHHHhcCCHHHHHHHH
Confidence 389999999998 7888776653
No 163
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=22.64 E-value=93 Score=28.12 Aligned_cols=81 Identities=17% Similarity=0.329 Sum_probs=55.3
Q ss_pred ecccCCCCCcCceEEEEEEEcCCccCCCccCCCccEEEEEEeCEEEEEEEecCC----------------------C---
Q 044045 79 TVAQIPGLNTLGASLARIDYAPWGVIPPHVHPRATEILTVIEGSLDVGFVTSNP----------------------E--- 133 (215)
Q Consensus 79 ~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E~~~Vl~G~~~~~~~~~~~----------------------~--- 133 (215)
+-..+|+.++.++.+....-+.|...+.|.-+. .-++.-+-|+.++.+..+.. +
T Consensus 238 Dyc~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~ 316 (355)
T KOG2132|consen 238 DYCSFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKA 316 (355)
T ss_pred ceeecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhh
Confidence 345566666656777766667799999997664 67777788888887764321 0
Q ss_pred ------CeeEEEEEcCCCEEEEcCCCeEEEEeC
Q 044045 134 ------NRLITKVLKKGDVFVFPIGLAHFQRNV 160 (215)
Q Consensus 134 ------~~~~~~~L~~GDv~~~P~G~~H~~~N~ 160 (215)
.+.....|++||++++|.-.-|+.+..
T Consensus 317 fp~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 317 FPKFAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred hhHHHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 111245688899999998888877543
No 164
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=21.14 E-value=1.7e+02 Score=25.18 Aligned_cols=60 Identities=17% Similarity=0.322 Sum_probs=36.7
Q ss_pred HHHHhhhhhcCCCCCcceeeeCCCCCcccCCcccCCCccccCCccc-cccccCCCCCCCCCCceEEEeecc
Q 044045 12 TVTCALVVAFEPSPLQDFCVADPSGSARVNGFACMDPKLAQANHFT-FSGLHVAGNTSNPLGSRVTPVTVA 81 (215)
Q Consensus 12 ~~~~~~~~~~d~~~~~d~cv~~~~~~~~~~g~~ck~p~~~~~~df~-~~~~~~~~~~~~~~g~~~~~~~~~ 81 (215)
++++.+=.++-|..+--+|+.|... ...||.+- ++|. +..-..+ ....+.|+.+..+...
T Consensus 161 AlaLAsKV~~~pgivAElC~SDDP~--YtTGYVA~-------~~~gY~RI~~mK-~~G~~~GGRvffv~~~ 221 (242)
T PRK01322 161 ALALASKVIAHPGVIAELCWSDDPD--YTTGYVAT-------KKLGYHRITNLK-EEGTPYGGRIFFVDDS 221 (242)
T ss_pred HHHHHHHHhcCCCeEEEEEecCCCC--CeeEEEEe-------CCCCeEeCcccc-ccCCCCCCEEEEEeCc
Confidence 3444444678999999999997643 56688643 4443 3332111 1225778888777654
No 165
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=21.03 E-value=81 Score=24.02 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=18.1
Q ss_pred CCCHHHHHHHcCCCHHHHHhhhc
Q 044045 191 SIADDLLAKAFQLDKSVVGQLQT 213 (215)
Q Consensus 191 ~~p~~vl~~af~~~~~~v~~l~~ 213 (215)
++++..+++..++++++|++++.
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~ 94 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRK 94 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHH
T ss_pred CCCHHHHHhccCCCHHHHHHHHH
Confidence 59999999999999999999875
No 166
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=20.40 E-value=1.2e+02 Score=26.04 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=27.4
Q ss_pred EEEEcCCCEEEEcCCCeEEE-EeCCCCc-EEEEEEEcCCC
Q 044045 138 TKVLKKGDVFVFPIGLAHFQ-RNVGHGN-AFSISALSSQN 175 (215)
Q Consensus 138 ~~~L~~GDv~~~P~G~~H~~-~N~g~~~-a~~l~~~~s~~ 175 (215)
...+++||+++|..-++|.- .|.++.+ ..++..|++.+
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~~ 251 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSVE 251 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecCC
Confidence 56789999999999999986 4665543 44445666543
Done!